Query psy3407
Match_columns 749
No_of_seqs 319 out of 1795
Neff 4.8
Searched_HMMs 29240
Date Sat Aug 17 00:13:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3407.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3407hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fim_B ARYL-alcohol oxidase; A 100.0 1.2E-65 4.2E-70 583.6 25.4 389 1-405 93-532 (566)
2 3qvp_A Glucose oxidase; oxidor 100.0 1.6E-61 5.4E-66 551.8 19.6 377 1-405 109-545 (583)
3 3q9t_A Choline dehydrogenase a 100.0 1.3E-59 4.3E-64 535.4 25.3 386 1-405 99-539 (577)
4 1gpe_A Protein (glucose oxidas 100.0 1.8E-60 6E-65 542.2 12.4 389 1-405 113-549 (587)
5 2jbv_A Choline oxidase; alcoho 100.0 7.4E-58 2.5E-62 515.9 30.0 371 1-405 102-496 (546)
6 3t37_A Probable dehydrogenase; 100.0 3.5E-55 1.2E-59 484.8 31.0 368 1-405 106-490 (526)
7 1kdg_A CDH, cellobiose dehydro 100.0 4.3E-44 1.5E-48 401.4 19.4 366 1-405 102-509 (546)
8 1ju2_A HydroxynitrIle lyase; f 100.0 5.6E-43 1.9E-47 394.0 19.3 340 1-405 112-483 (536)
9 1n4w_A CHOD, cholesterol oxida 100.0 5.1E-41 1.7E-45 374.6 23.4 329 1-405 116-466 (504)
10 1coy_A Cholesterol oxidase; ox 100.0 1.2E-39 4.1E-44 364.1 22.6 326 1-405 121-471 (507)
11 3pl8_A Pyranose 2-oxidase; sub 100.0 8.3E-33 2.8E-37 317.2 18.0 279 101-405 249-579 (623)
12 4at0_A 3-ketosteroid-delta4-5a 96.9 0.0018 6.1E-08 72.0 9.1 65 111-176 207-272 (510)
13 3cxb_B Pleckstrin homology dom 95.7 0.019 6.3E-07 51.4 6.7 86 552-637 3-97 (112)
14 1y0p_A Fumarate reductase flav 94.8 0.055 1.9E-06 60.9 8.6 63 111-174 260-323 (571)
15 1qo8_A Flavocytochrome C3 fuma 94.8 0.051 1.7E-06 61.2 8.3 61 111-172 255-315 (566)
16 3aj4_A Pleckstrin homology dom 94.7 0.07 2.4E-06 46.6 7.3 92 545-636 1-106 (112)
17 1d4d_A Flavocytochrome C fumar 94.7 0.054 1.9E-06 61.3 8.3 65 111-176 260-325 (572)
18 2yry_A Pleckstrin homology dom 94.3 0.15 5E-06 45.0 8.5 100 538-637 11-116 (122)
19 2d9y_A Pleckstrin homology dom 93.8 0.25 8.6E-06 43.1 8.8 97 541-637 3-105 (117)
20 2wdq_A Succinate dehydrogenase 93.7 0.093 3.2E-06 59.9 7.4 53 117-170 154-207 (588)
21 2dkp_A Pleckstrin homology dom 93.5 0.15 5E-06 45.4 6.9 100 537-636 9-114 (128)
22 2h88_A Succinate dehydrogenase 93.4 0.13 4.4E-06 59.3 8.0 53 116-170 165-218 (621)
23 1pls_A Pleckstrin homology dom 93.4 0.25 8.6E-06 43.1 8.1 90 548-637 4-97 (113)
24 2bs2_A Quinol-fumarate reducta 93.3 0.2 7E-06 58.1 9.4 52 117-170 169-221 (660)
25 1wgq_A FYVE, rhogef and PH dom 93.3 0.25 8.5E-06 42.9 7.9 90 548-637 7-99 (109)
26 1chu_A Protein (L-aspartate ox 93.0 0.15 5.2E-06 57.4 7.6 55 115-170 148-209 (540)
27 1wjm_A Beta-spectrin III; PH d 92.8 0.07 2.4E-06 47.7 3.6 90 547-637 6-113 (123)
28 3da1_A Glycerol-3-phosphate de 92.7 0.15 5.1E-06 57.7 7.0 62 116-180 180-242 (561)
29 1kf6_A Fumarate reductase flav 92.6 0.21 7.1E-06 57.2 8.1 55 115-171 144-199 (602)
30 1v89_A Hypothetical protein KI 92.2 0.32 1.1E-05 42.2 7.0 92 546-637 5-108 (118)
31 1u5d_A SKAP55, SRC kinase-asso 92.0 0.24 8.2E-06 42.3 6.0 88 549-636 3-100 (108)
32 2cof_A Protein KIAA1914; PH do 92.0 0.32 1.1E-05 42.3 6.8 90 546-637 5-97 (107)
33 4dgk_A Phytoene dehydrogenase; 91.9 0.091 3.1E-06 57.2 3.8 56 116-177 231-286 (501)
34 2rgh_A Alpha-glycerophosphate 91.9 0.19 6.5E-06 57.0 6.6 60 117-179 199-259 (571)
35 1dro_A Beta-spectrin; cytoskel 91.7 0.092 3.1E-06 47.1 3.0 88 549-637 8-115 (122)
36 2d9v_A Pleckstrin homology dom 91.6 0.51 1.8E-05 42.8 8.0 93 545-637 4-110 (130)
37 1upq_A PEPP1; PH domain, phosp 91.6 0.51 1.8E-05 41.5 7.8 97 541-637 3-105 (123)
38 1eaz_A Tandem PH domain contai 91.4 0.43 1.5E-05 42.1 7.1 91 545-636 10-106 (125)
39 1fao_A Dual adaptor of phospho 91.3 0.6 2E-05 41.5 7.9 93 544-637 13-108 (126)
40 2cod_A Centaurin-delta 1; ARF 91.3 0.36 1.2E-05 42.3 6.3 89 545-636 4-94 (115)
41 1u5f_A SRC-associated adaptor 90.6 0.67 2.3E-05 42.6 7.9 95 547-641 15-119 (148)
42 3pp2_A RHO GTPase-activating p 90.6 0.72 2.5E-05 41.8 7.9 90 548-637 7-119 (124)
43 3dme_A Conserved exported prot 90.1 0.21 7.2E-06 51.1 4.3 61 115-180 159-220 (369)
44 1btn_A Beta-spectrin; signal t 90.0 0.35 1.2E-05 41.3 5.0 77 560-636 18-103 (106)
45 2dn6_A KIAA0640 protein; PH do 89.8 0.86 2.9E-05 39.5 7.4 92 545-637 4-99 (115)
46 3e1t_A Halogenase; flavoprotei 89.4 0.5 1.7E-05 52.4 7.0 57 110-168 115-171 (512)
47 3gyx_A Adenylylsulfate reducta 89.2 0.32 1.1E-05 56.6 5.4 49 120-169 182-233 (662)
48 1jnr_A Adenylylsulfate reducta 88.8 0.43 1.5E-05 54.9 6.1 50 120-170 166-219 (643)
49 2i5f_A Pleckstrin; PH domain, 88.7 1.1 3.8E-05 38.4 7.3 90 548-637 6-105 (109)
50 3ka7_A Oxidoreductase; structu 88.6 0.23 8E-06 52.5 3.4 53 116-175 206-258 (425)
51 3dje_A Fructosyl amine: oxygen 88.5 0.29 9.9E-06 52.3 4.1 54 114-174 169-225 (438)
52 2y7b_A Actin-binding protein a 88.3 0.47 1.6E-05 42.5 4.8 92 545-636 1-123 (134)
53 1unq_A RAC-alpha serine/threon 87.9 0.44 1.5E-05 42.4 4.2 90 547-636 6-105 (125)
54 1u5e_A SRC-associated adaptor 87.7 1.4 4.7E-05 43.9 8.2 160 477-637 5-204 (211)
55 3cgv_A Geranylgeranyl reductas 87.4 0.69 2.4E-05 48.1 6.1 57 110-169 106-162 (397)
56 1rp0_A ARA6, thiazole biosynth 87.3 1.3 4.3E-05 45.2 7.8 52 115-168 129-190 (284)
57 3atr_A Conserved archaeal prot 87.3 0.81 2.8E-05 49.6 6.7 57 111-169 105-162 (453)
58 2d9x_A Oxysterol binding prote 86.6 1 3.4E-05 40.0 5.9 92 545-636 4-99 (120)
59 1fgy_A GRP1; PH domain, signal 86.4 1.8 6.1E-05 38.0 7.4 65 549-613 5-71 (127)
60 2da0_A 130-kDa phosphatidylino 86.1 1.7 5.6E-05 38.3 6.9 87 547-637 8-97 (114)
61 1x1g_A Pleckstrin 2; PH domain 85.8 1.4 4.7E-05 39.1 6.3 91 547-637 16-120 (129)
62 3f8d_A Thioredoxin reductase ( 84.9 3.4 0.00012 41.2 9.5 66 111-179 195-261 (323)
63 1y56_B Sarcosine oxidase; dehy 84.8 1 3.5E-05 46.8 5.8 58 114-179 157-214 (382)
64 1v5u_A SBF1, SET binding facto 84.5 2.1 7E-05 37.1 6.7 89 548-637 7-107 (117)
65 1x05_A Pleckstrin; PH domain, 84.2 2 6.9E-05 38.1 6.7 93 545-637 14-116 (129)
66 1v5m_A SH2 and PH domain-conta 83.5 2.1 7.3E-05 40.5 6.7 95 542-636 11-125 (136)
67 2rsg_A Collagen type IV alpha- 83.5 2.3 7.8E-05 35.8 6.4 85 551-636 3-89 (94)
68 2i0z_A NAD(FAD)-utilizing dehy 82.9 1.2 4.2E-05 48.3 5.6 55 112-172 140-194 (447)
69 3itj_A Thioredoxin reductase 1 82.7 2.6 9E-05 42.4 7.6 59 115-175 218-277 (338)
70 3rcp_A Pleckstrin homology dom 82.5 3.7 0.00013 34.8 7.5 76 562-637 12-89 (103)
71 3axb_A Putative oxidoreductase 82.4 0.88 3E-05 48.8 4.2 57 115-178 190-262 (448)
72 2w2x_D 1-phosphatidylinositol- 81.6 1.2 4.2E-05 40.1 4.2 89 549-637 12-115 (124)
73 3cty_A Thioredoxin reductase; 81.6 1.7 5.6E-05 44.1 5.6 61 117-179 201-262 (319)
74 3r9u_A Thioredoxin reductase; 81.2 2.2 7.4E-05 42.6 6.3 64 111-176 188-251 (315)
75 2gag_B Heterotetrameric sarcos 80.9 1.2 4.1E-05 46.5 4.5 58 114-179 182-239 (405)
76 3ab1_A Ferredoxin--NADP reduct 80.9 3.2 0.00011 42.9 7.6 66 112-179 208-273 (360)
77 1wg7_A Dedicator of cytokinesi 80.9 2.2 7.4E-05 39.1 5.7 90 547-637 16-120 (150)
78 2gmh_A Electron transfer flavo 80.5 1.6 5.4E-05 49.6 5.6 60 110-170 148-218 (584)
79 1fl2_A Alkyl hydroperoxide red 80.4 3.6 0.00012 41.3 7.6 56 118-175 192-248 (310)
80 2j59_M RHO-GTPase activating p 80.4 2.4 8.2E-05 39.7 5.9 79 562-641 26-111 (168)
81 2qcu_A Aerobic glycerol-3-phos 80.0 2 6.8E-05 47.4 6.0 55 117-175 160-215 (501)
82 2p0d_A RHO GTPase-activating p 78.2 5.9 0.0002 35.9 7.7 90 548-637 11-120 (129)
83 2coc_A FYVE, rhogef and PH dom 77.6 5.3 0.00018 36.0 7.0 84 551-636 10-101 (112)
84 3tfm_A Myosin X; split PH doma 77.6 3.7 0.00013 41.0 6.6 90 548-638 57-152 (228)
85 1v88_A Oxysterol binding prote 77.6 4.7 0.00016 37.0 6.8 95 545-640 4-123 (130)
86 3nix_A Flavoprotein/dehydrogen 77.3 2.6 9.1E-05 44.3 5.8 55 111-168 111-165 (421)
87 2e5v_A L-aspartate oxidase; ar 76.7 3 0.0001 45.9 6.2 48 116-169 129-176 (472)
88 1trb_A Thioredoxin reductase; 76.5 4 0.00014 41.0 6.6 58 116-175 194-253 (320)
89 2dhk_A TBC1 domain family memb 76.3 5.9 0.0002 35.0 6.9 87 549-637 8-100 (119)
90 3nlc_A Uncharacterized protein 76.2 1.8 6E-05 49.3 4.2 47 117-169 231-277 (549)
91 1mo9_A ORF3; nucleotide bindin 76.0 3.7 0.00013 45.6 6.7 67 111-179 260-327 (523)
92 3nyc_A D-arginine dehydrogenas 75.9 1.5 5.1E-05 45.2 3.3 55 116-179 164-218 (381)
93 3oz2_A Digeranylgeranylglycero 74.9 3.8 0.00013 41.9 6.1 59 109-171 105-163 (397)
94 3i3l_A Alkylhalidase CMLS; fla 74.6 3.2 0.00011 47.4 5.8 55 110-167 132-186 (591)
95 1x1f_A Signal-transducing adap 73.8 7.5 0.00026 36.7 7.3 88 549-637 18-109 (149)
96 2oln_A NIKD protein; flavoprot 73.2 3.4 0.00012 43.3 5.3 53 116-177 163-215 (397)
97 2zxi_A TRNA uridine 5-carboxym 72.7 2 6.9E-05 49.9 3.6 49 118-173 136-184 (637)
98 3tca_A Amyloid beta A4 precurs 72.3 6.5 0.00022 39.7 7.0 87 551-637 170-272 (291)
99 3p1w_A Rabgdi protein; GDI RAB 72.0 2.5 8.7E-05 47.2 4.1 48 116-168 266-313 (475)
100 3lxd_A FAD-dependent pyridine 71.5 4.2 0.00014 43.4 5.5 64 111-180 199-262 (415)
101 3jsk_A Cypbp37 protein; octame 71.3 6.3 0.00022 42.4 6.8 59 111-170 166-252 (344)
102 3ps9_A TRNA 5-methylaminomethy 70.9 2.6 9E-05 48.3 4.0 53 117-177 428-480 (676)
103 3ces_A MNMG, tRNA uridine 5-ca 70.3 3.3 0.00011 48.2 4.7 50 116-172 134-184 (651)
104 1vdc_A NTR, NADPH dependent th 70.0 10 0.00036 38.3 7.9 63 115-179 204-268 (333)
105 2q7v_A Thioredoxin reductase; 69.8 9.3 0.00032 38.6 7.5 59 114-175 196-255 (325)
106 1hyu_A AHPF, alkyl hydroperoxi 69.5 8.2 0.00028 42.9 7.5 54 119-174 404-458 (521)
107 1ryi_A Glycine oxidase; flavop 69.1 4.4 0.00015 41.9 5.0 56 114-178 172-227 (382)
108 3a8p_A T-lymphoma invasion and 68.8 7.9 0.00027 39.8 6.7 77 563-640 37-123 (263)
109 3fg2_P Putative rubredoxin red 68.6 3.9 0.00013 43.5 4.6 64 111-180 189-252 (404)
110 2q0l_A TRXR, thioredoxin reduc 68.6 9.7 0.00033 38.1 7.2 61 115-177 188-249 (311)
111 2uzz_A N-methyl-L-tryptophan o 67.6 4.7 0.00016 41.5 4.8 51 115-174 158-208 (372)
112 1wi1_A Calcium-dependent activ 67.1 9.6 0.00033 35.6 6.2 34 603-637 73-106 (126)
113 1pj5_A N,N-dimethylglycine oxi 66.8 5 0.00017 47.2 5.3 56 116-179 161-216 (830)
114 2gjc_A Thiazole biosynthetic e 66.7 11 0.00039 40.0 7.6 52 115-166 156-236 (326)
115 3pvc_A TRNA 5-methylaminomethy 66.7 3.8 0.00013 47.3 4.2 55 116-177 422-476 (689)
116 3v76_A Flavoprotein; structura 66.3 5.5 0.00019 43.3 5.2 55 111-173 137-191 (417)
117 3nrn_A Uncharacterized protein 64.7 3.3 0.00011 44.0 2.9 51 116-175 199-249 (421)
118 1qqg_A IRS-1, insulin receptor 64.0 6 0.0002 40.8 4.7 88 548-640 9-111 (264)
119 2gf3_A MSOX, monomeric sarcosi 63.7 6.4 0.00022 40.7 4.9 53 116-177 160-212 (389)
120 3lzw_A Ferredoxin--NADP reduct 63.7 8.3 0.00028 38.6 5.6 60 117-179 200-260 (332)
121 2xve_A Flavin-containing monoo 63.0 7 0.00024 42.7 5.3 68 110-178 105-175 (464)
122 2cul_A Glucose-inhibited divis 62.4 5.5 0.00019 39.1 3.9 56 110-172 72-128 (232)
123 2zbw_A Thioredoxin reductase; 62.3 14 0.00046 37.4 6.9 66 111-179 196-262 (335)
124 2gqf_A Hypothetical protein HI 60.0 6.8 0.00023 42.2 4.4 55 111-172 114-171 (401)
125 2r09_A Cytohesin-3; autoinhibi 58.9 17 0.00057 38.8 7.1 65 549-613 213-279 (347)
126 3a8n_A TIAM-1, T-lymphoma inva 57.6 6 0.0002 41.5 3.3 90 547-638 9-121 (279)
127 3s5w_A L-ornithine 5-monooxyge 57.5 10 0.00036 40.6 5.3 60 110-172 131-193 (463)
128 2ywl_A Thioredoxin reductase r 55.6 13 0.00046 34.2 5.1 59 110-179 60-118 (180)
129 4a9w_A Monooxygenase; baeyer-v 54.9 5.3 0.00018 40.3 2.4 63 109-178 79-141 (357)
130 3ihg_A RDME; flavoenzyme, anth 53.8 14 0.00048 40.8 5.7 56 111-168 125-182 (535)
131 2qa2_A CABE, polyketide oxygen 53.2 21 0.00073 39.4 7.1 54 111-168 112-165 (499)
132 1k0i_A P-hydroxybenzoate hydro 52.4 17 0.00057 37.9 5.8 51 118-171 115-165 (394)
133 2qa1_A PGAE, polyketide oxygen 51.7 20 0.00069 39.6 6.6 54 111-168 111-164 (500)
134 1vg0_A RAB proteins geranylger 51.6 14 0.00047 43.1 5.4 48 115-167 387-435 (650)
135 3iwa_A FAD-dependent pyridine 50.6 17 0.00059 39.3 5.7 62 111-179 207-268 (472)
136 2bcg_G Secretory pathway GDP d 50.1 8.8 0.0003 41.7 3.3 46 117-168 253-299 (453)
137 2bry_A NEDD9 interacting prote 49.8 5 0.00017 44.4 1.3 61 111-172 171-233 (497)
138 2weu_A Tryptophan 5-halogenase 49.8 14 0.00047 40.4 4.8 51 111-167 178-228 (511)
139 3c4n_A Uncharacterized protein 49.0 8.3 0.00028 41.0 2.8 56 115-179 181-246 (405)
140 2qae_A Lipoamide, dihydrolipoy 48.1 23 0.00078 38.3 6.2 66 111-179 220-288 (468)
141 3lju_X ARF-GAP with dual PH do 48.0 39 0.0013 36.5 8.0 89 547-637 267-368 (386)
142 3s5w_A L-ornithine 5-monooxyge 47.9 34 0.0012 36.6 7.4 49 119-170 329-378 (463)
143 2x3n_A Probable FAD-dependent 47.8 21 0.00071 37.4 5.6 46 118-169 120-166 (399)
144 3dgh_A TRXR-1, thioredoxin red 45.0 31 0.001 37.6 6.6 62 111-174 232-294 (483)
145 2dkh_A 3-hydroxybenzoate hydro 44.9 26 0.00087 40.0 6.2 54 116-170 152-212 (639)
146 4a6h_A Phosphatidylinositol 4, 44.7 57 0.002 29.4 7.3 87 549-636 6-113 (120)
147 3cp8_A TRNA uridine 5-carboxym 44.3 27 0.00094 40.5 6.3 46 118-170 130-175 (641)
148 2fjl_A 1-phosphatidylinositol- 44.3 36 0.0012 32.6 6.1 34 603-636 108-143 (150)
149 3ic9_A Dihydrolipoamide dehydr 43.1 40 0.0014 37.0 7.2 54 116-173 225-278 (492)
150 3gwf_A Cyclohexanone monooxyge 43.0 13 0.00043 41.9 3.2 66 109-179 90-157 (540)
151 2lul_A Tyrosine-protein kinase 42.7 70 0.0024 30.0 7.9 24 653-676 101-124 (164)
152 1d5t_A Guanine nucleotide diss 42.4 7.9 0.00027 41.9 1.4 45 117-168 245-289 (433)
153 2gv8_A Monooxygenase; FMO, FAD 42.3 23 0.0008 38.0 5.1 66 110-178 119-186 (447)
154 3lju_X ARF-GAP with dual PH do 42.0 30 0.001 37.4 5.9 88 550-637 147-242 (386)
155 1v59_A Dihydrolipoamide dehydr 41.1 35 0.0012 36.9 6.3 61 111-172 229-290 (478)
156 1q1r_A Putidaredoxin reductase 41.1 18 0.0006 39.0 3.9 64 112-180 197-261 (431)
157 4b63_A L-ornithine N5 monooxyg 41.0 28 0.00096 38.5 5.6 57 110-167 149-212 (501)
158 2e4g_A Tryptophan halogenase; 39.9 17 0.00059 40.5 3.7 51 111-167 199-250 (550)
159 3lad_A Dihydrolipoamide dehydr 38.4 30 0.001 37.4 5.2 54 112-169 227-280 (476)
160 3ef6_A Toluene 1,2-dioxygenase 38.0 15 0.00051 39.2 2.7 63 111-180 190-252 (410)
161 2vvm_A Monoamine oxidase N; FA 37.7 40 0.0014 36.3 6.1 43 118-167 268-310 (495)
162 2aqj_A Tryptophan halogenase, 37.7 24 0.00081 39.1 4.3 52 111-168 170-221 (538)
163 1v5p_A Pleckstrin homology dom 37.5 99 0.0034 27.8 7.8 75 562-637 29-116 (126)
164 3d1c_A Flavin-containing putat 37.4 25 0.00084 35.9 4.1 54 110-171 92-145 (369)
165 2hqm_A GR, grase, glutathione 37.4 19 0.00066 39.2 3.5 65 111-179 231-296 (479)
166 2pyx_A Tryptophan halogenase; 37.3 28 0.00096 38.4 4.8 51 111-167 180-231 (526)
167 3urh_A Dihydrolipoyl dehydroge 37.2 46 0.0016 36.2 6.5 65 112-179 245-312 (491)
168 2v3a_A Rubredoxin reductase; a 36.8 42 0.0014 35.1 5.9 62 111-179 192-253 (384)
169 2a87_A TRXR, TR, thioredoxin r 36.3 23 0.00078 36.1 3.6 56 116-174 201-257 (335)
170 3fmw_A Oxygenase; mithramycin, 36.2 22 0.00076 40.1 3.9 54 111-168 153-206 (570)
171 2q13_A DCC-interacting protein 35.4 42 0.0014 35.8 5.7 88 548-637 277-371 (385)
172 2eq6_A Pyruvate dehydrogenase 34.0 42 0.0014 36.3 5.5 65 111-179 215-283 (464)
173 2r0c_A REBC; flavin adenine di 33.9 70 0.0024 35.6 7.4 45 123-170 152-197 (549)
174 3nks_A Protoporphyrinogen oxid 33.9 13 0.00045 39.7 1.5 50 117-173 245-294 (477)
175 4ap3_A Steroid monooxygenase; 33.5 15 0.00052 41.3 1.9 66 109-179 102-169 (549)
176 3k7m_X 6-hydroxy-L-nicotine ox 32.6 46 0.0016 34.9 5.4 47 112-166 210-256 (431)
177 2jae_A L-amino acid oxidase; o 32.6 74 0.0025 34.2 7.1 42 121-166 252-293 (489)
178 3hyw_A Sulfide-quinone reducta 32.4 49 0.0017 35.5 5.6 61 111-179 205-265 (430)
179 3dgz_A Thioredoxin reductase 2 32.3 69 0.0023 34.9 6.8 61 111-173 230-291 (488)
180 3qj4_A Renalase; FAD/NAD(P)-bi 32.2 15 0.00052 37.6 1.6 48 120-174 123-170 (342)
181 3dk9_A Grase, GR, glutathione 31.6 58 0.002 35.2 6.1 68 111-179 233-305 (478)
182 3uox_A Otemo; baeyer-villiger 31.0 21 0.00071 40.2 2.5 65 110-179 91-157 (545)
183 1m6i_A Programmed cell death p 30.9 40 0.0014 37.0 4.7 62 111-179 231-292 (493)
184 1dxl_A Dihydrolipoamide dehydr 30.9 36 0.0012 36.7 4.3 60 111-173 223-283 (470)
185 2a8x_A Dihydrolipoyl dehydroge 30.9 47 0.0016 35.8 5.2 65 111-179 217-283 (464)
186 3cgb_A Pyridine nucleotide-dis 30.4 48 0.0016 36.1 5.2 60 112-179 233-292 (480)
187 4dna_A Probable glutathione re 30.4 44 0.0015 36.1 4.8 63 111-179 216-280 (463)
188 1ebd_A E3BD, dihydrolipoamide 30.1 54 0.0018 35.2 5.5 59 111-173 216-274 (455)
189 1zmd_A Dihydrolipoyl dehydroge 30.0 57 0.0019 35.3 5.7 67 111-179 225-294 (474)
190 2rov_A RHO-associated protein 29.2 51 0.0017 29.6 4.3 34 603-636 72-110 (117)
191 3oc4_A Oxidoreductase, pyridin 29.0 68 0.0023 34.5 6.0 56 111-174 194-249 (452)
192 3lzw_A Ferredoxin--NADP reduct 28.9 40 0.0014 33.6 3.9 64 108-178 69-133 (332)
193 2rlo_A Centaurin-gamma 1; spli 28.2 32 0.0011 30.5 2.8 34 604-637 87-120 (128)
194 1yvv_A Amine oxidase, flavin-c 28.0 42 0.0014 33.7 4.0 49 120-174 119-167 (336)
195 2dtc_A RAL guanine nucleotide 27.5 75 0.0026 29.3 5.2 74 563-638 22-109 (126)
196 3ab1_A Ferredoxin--NADP reduct 27.4 74 0.0025 32.5 5.7 62 111-178 79-141 (360)
197 4h8s_A DCC-interacting protein 27.4 52 0.0018 35.3 4.8 90 546-636 298-393 (407)
198 3h8l_A NADH oxidase; membrane 27.1 65 0.0022 33.9 5.3 59 112-178 62-120 (409)
199 1xdi_A RV3303C-LPDA; reductase 26.5 52 0.0018 35.9 4.6 56 111-173 228-283 (499)
200 1btk_A Bruton'S tyrosine kinas 25.2 76 0.0026 30.1 5.0 35 605-640 97-131 (169)
201 1w4x_A Phenylacetone monooxyge 24.9 38 0.0013 37.6 3.2 54 121-179 111-164 (542)
202 2cdu_A NADPH oxidase; flavoenz 24.7 42 0.0014 36.0 3.4 57 111-174 196-252 (452)
203 2zbw_A Thioredoxin reductase; 24.5 89 0.0031 31.3 5.6 57 111-174 70-127 (335)
204 1sez_A Protoporphyrinogen oxid 24.4 15 0.0005 39.8 -0.3 53 121-174 256-313 (504)
205 2gag_A Heterotetrameric sarcos 24.3 71 0.0024 38.5 5.6 61 117-178 327-392 (965)
206 3h28_A Sulfide-quinone reducta 23.7 85 0.0029 33.4 5.5 62 111-179 205-267 (430)
207 2ivd_A PPO, PPOX, protoporphyr 23.4 62 0.0021 34.5 4.4 50 120-174 249-299 (478)
208 1gte_A Dihydropyrimidine dehyd 23.1 1E+02 0.0035 37.4 6.7 61 117-179 381-454 (1025)
209 3i6d_A Protoporphyrinogen oxid 23.0 60 0.002 34.2 4.1 47 121-174 248-294 (470)
210 1fec_A Trypanothione reductase 22.6 56 0.0019 35.7 4.0 52 111-168 236-287 (490)
211 2wpf_A Trypanothione reductase 22.3 67 0.0023 35.3 4.5 63 111-179 240-304 (495)
212 3ntd_A FAD-dependent pyridine 22.0 87 0.003 34.4 5.4 63 111-179 197-277 (565)
213 3pg7_A Neurofibromin; SEC lipi 21.7 13 0.00046 38.1 -1.2 51 414-465 19-69 (256)
214 1onf_A GR, grase, glutathione 21.1 1.1E+02 0.0038 33.4 5.9 56 111-171 222-277 (500)
215 1upq_A PEPP1; PH domain, phosp 21.1 58 0.002 28.1 3.0 35 653-688 89-123 (123)
216 1cjc_A Protein (adrenodoxin re 20.9 1.3E+02 0.0046 32.7 6.5 52 119-171 270-335 (460)
No 1
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase, flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Probab=100.00 E-value=1.2e-65 Score=583.57 Aligned_cols=389 Identities=20% Similarity=0.267 Sum_probs=318.0
Q ss_pred CEEEcCChhhhHHHHHc-CCCCCCccchHHHHHHhhcCCCCCCC--------CCCCCCCCCCcccCCCCCCChHHHHHHH
Q psy3407 1 MLYQRGNDRDYNDWERA-GNPGWGFKHILPYFLKSEDFQDISRQ--------DAAFHNTGGYLTVSPRLSPDETVKIIEA 71 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~l-G~~GWSYddLePYY~KaE~~~~gvsg--------~~~~hG~~GPl~V~~P~~~~p~~~~f~~ 71 (749)
|+|+||++.|||.|+++ |++||+|++|+|||+|+|++ ..+.. ++.+||.+||++++++.+..++.+.|.+
T Consensus 93 m~~~Rg~~~d~d~W~~~~G~~gWs~~~~~pyf~k~E~~-~~~~~~~~~~~~~~~~~hG~~Gp~~v~~~~~~~~~~~~~~~ 171 (566)
T 3fim_B 93 MVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMV-VPPADNHNTSGEFIPAVHGTNGSVSISLPGFPTPLDDRVLA 171 (566)
T ss_dssp CBCCCCCHHHHHHHHHHHTCTTSSHHHHHHHHHHHEEE-CCCTTCCCCTTTSCGGGSCBSSSEEEBSCSSCCTHHHHHHH
T ss_pred eEEecCCHHHHHHHHhcCCCCCcCHHHHHHHHHHHhcc-CCccccccccccCCccccCCCCCeeeecCCCCCHHHHHHHH
Confidence 89999999999999998 99999999999999999998 54421 2468999999999999888999999999
Q ss_pred HHHHc--CCCCCCCCCCCCCccccccccccCCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeC---CC-CcEEEEEE
Q psy3407 72 AGKEL--KIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILID---SK-LKAYGVEY 145 (749)
Q Consensus 72 A~~eL--G~~~~~D~N~g~~~G~~~c~~~c~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d---~g-grAtGV~y 145 (749)
+++++ |++...|+|++...|++.|+.+|++|.|+|++.+||.|+++|+||+|++++.|+||+++ ++ +||+||+|
T Consensus 172 a~~~~~~G~~~~~d~n~~~~~G~~~~~~~~~~g~R~sa~~ayL~p~~~r~NL~Vlt~a~V~rIl~~~~~~g~~rA~GVe~ 251 (566)
T 3fim_B 172 TTQEQSEEFFFNPDMGTGHPLGISWSIASVGNGQRSSSSTAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEY 251 (566)
T ss_dssp HHHHTHHHHCBCSCGGGSCCCEEEECCBSEETTEECCHHHHTHHHHTTCTTEEEESSCEEEEEECCEEETTEEECCEEEE
T ss_pred HHHHHhcCCCccCCCCCCCcceEEeeeeecCCCEEcCHHHHHhhhhccCCCeEEECCCEEEEEEeecCCCCCCEEEEEEE
Confidence 99999 99999999999999999999999999999999999999989999999999999999998 34 79999999
Q ss_pred EecCC-eEEEEEeccEEEEccCCCCChHHHhhcCCCccccccccCcceeecCC-CCCCcccccccceEEEEeCCCCccc-
Q psy3407 146 INSQG-KICHVNSTREVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAIT- 222 (749)
Q Consensus 146 ~d~~G-~~~~V~ArKeVILAAGAIeTPrLLL~SGIGpas~L~~~GIpvVaDLP-VGRNLqDHp~v~~v~~~~~e~~~~~- 222 (749)
.+.+| +.++++|+||||||||||+||||||+|||||+++|+++||+|++|+| ||+|||||+.+. +.|..+.+....
T Consensus 252 ~~~~g~~~~~v~A~kEVILsAGai~SPqlL~lSGIGp~~~L~~~gI~vv~dlPgVG~NLqDH~~~~-~~~~~~~~~~~~~ 330 (566)
T 3fim_B 252 AEQEGAPTTTVCAKKEVVLSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLP-AAFFVNSNQTFDN 330 (566)
T ss_dssp ESSTTSCCEEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEEEC-CEEEESCSCSSGG
T ss_pred EECCCceEEEEEeeeEEEEecCCcCChHHHHhcCCCChHHHhhcCCCceecCcchhhhhhcCccce-EEEEeCCCcccch
Confidence 87556 88899999999999999999999999999999999999999999999 999999999887 778776554321
Q ss_pred --cchHHH----HH-HhhccC-ccccccceEEEEEecCC-------------CCCCCceeeeeccccCCccccccccccc
Q psy3407 223 --LHYLRY----LK-VAALKG-ISTVEVAKVVGFINTKR-------------NSLYPNVELLSIRIPMNSKERNNGKSVM 281 (749)
Q Consensus 223 --~~~~~l----~~-~~~r~G-~ts~~~~e~~~f~~s~~-------------~~~~Pdiq~~f~p~~~g~d~~~~~~~~~ 281 (749)
...... .. ...++| ++ ....+..+|+++.. ....|++|+++.+..... .........
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~G~l~-~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~pd~~~~~~~~~~~~-~~~~~~~~~ 408 (566)
T 3fim_B 331 IFRDSSEFNVDLDQWTNTRTGPLT-ALIANHLAWLRLPSNSSIFQTFPDPAAGPNSAHWETIFSNQWFHP-AIPRPDTGS 408 (566)
T ss_dssp GGTCHHHHHHHHHHHHHHSCSGGG-CCSCSEEEEECCCTTCGGGGTSCCCSSSTTSCSEEEEEESSCCCT-TSCCCSSCC
T ss_pred hhcChHHHHHHHHHHHhcCCCCcc-cChhhheeeeccccchhhhhhhccccccCCCCCEEEEecccchhh-cccCCCCCC
Confidence 011111 12 556888 76 45567788987642 135788988776543322 111111223
Q ss_pred cceeeeeeeccCCCCeEEecCCCCCCCceEEEeecCCCCCcccHHHHHHHHHHHHHHHHHHHH-hcCCCCcccccCC-C-
Q psy3407 282 GSLFGQEVLVDDNDKDVIASPTNLTAKVQTIFESFTKMSETNININKKQFMSNMDKVFETIKT-KFEPFAEGEIPIE-S- 358 (749)
Q Consensus 282 g~~i~i~l~lP~srGrVtL~skDp~G~PvI~i~Y~s~~~~p~~~~D~a~L~egir~arrIL~A-Aga~~~~~eis~~-s- 358 (749)
.+.+...+++|.|||+|+|+++||++.|.|+++|+.+ | .|++.++++++.+++|+++ +++.+...+..+. .
T Consensus 409 ~~~~~~~l~~P~SrG~V~L~s~dp~~~P~i~~~yl~~---~---~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~P~~~~ 482 (566)
T 3fim_B 409 FMSVTNALISPVARGDIKLATSNPFDKPLINPQYLST---E---FDIFTMIQAVKSNLRFLSGQAWADFVIRPFDPRLRD 482 (566)
T ss_dssp EEEEEEEESSCSCCBEEECSSSCTTSCCEEECCTTCS---H---HHHHHHHHHHHHHHHHHTSGGGTTTEEEESSGGGSC
T ss_pred EEEEEEeecCCccceEEEecCCCCCCCceeccccCCC---c---cHHHHHHHHHHHHHHHHhCcccCCccccccCCCccc
Confidence 4566667899999999999999999999999999999 8 9999999999999999987 5666555444332 1
Q ss_pred --CCCccc----CCC--CCCccccccCCCCCCCCCCCCC-CccCCCCCccCCCCcc
Q psy3407 359 --RSSYWN----NNS--DGTSKEACEMGKLGSSTPIKKH-SVITSNNNSLNLENIL 405 (749)
Q Consensus 359 --~~~~~~----~~~--~Gt~mGTcRMG~D~~~~p~Pkt-SVVD~~grsHD~~NL~ 405 (749)
..+.|. .+. ..|.+||||||.+ ++. +|||+++|.|+++||+
T Consensus 483 ~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~------~~~~~VVD~~lrV~Gv~~Lr 532 (566)
T 3fim_B 483 PTDDAAIESYIRDNANTIFHPVGTASMSPR------GASWGVVDPDLKVKGVDGLR 532 (566)
T ss_dssp TTCHHHHHHHHHHHCEECSCCBCTTCBCCT------TCSSCSBCTTCBBTTCBSEE
T ss_pred ccchHHHHHHHhhcccccccccCccccCCc------ccCCccCCCCCeEccCCCcE
Confidence 011111 111 1249999999998 576 9999999999999997
No 2
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A {Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Probab=100.00 E-value=1.6e-61 Score=551.77 Aligned_cols=377 Identities=22% Similarity=0.253 Sum_probs=285.8
Q ss_pred CEEEcCChhhhHHHHHcCCC-CCCccchHHHHHHhhcCCCCCC---------CCCCCCCCCCCcccCCC---CCCChHHH
Q psy3407 1 MLYQRGNDRDYNDWERAGNP-GWGFKHILPYFLKSEDFQDISR---------QDAAFHNTGGYLTVSPR---LSPDETVK 67 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~lG~~-GWSYddLePYY~KaE~~~~gvs---------g~~~~hG~~GPl~V~~P---~~~~p~~~ 67 (749)
|+|+||++.|||.|+++|++ ||+|++|+|||+|+|++ ..+. ++..+||.+||++++++ ....++.+
T Consensus 109 m~y~Rg~~~Dyd~W~~~g~~~gW~~~~~lpyf~k~E~~-~~~~~~~~~~~~~~~~~~hG~~Gpl~v~~~~~~~~~~~~~~ 187 (583)
T 3qvp_A 109 GTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERA-RAPNAKQIAAGHYFNASCHGVNGTVHAGPRDTGDDYSPIVK 187 (583)
T ss_dssp CBCCCCCHHHHHHHHHTSCCTTCSHHHHHHHHHHHEEE-CCCCHHHHHHTCCCCGGGSCSSSSEEEBCCCCSSCBCTHHH
T ss_pred eEEEeCCHHHHHHHHHhCCCCCCChhHHHHHHHHHHhc-cCCcchhhcccccCCccccCCCCCEEecCCCCcccCCHHHH
Confidence 89999999999999999987 99999999999999998 5432 23568999999999887 34578999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCccccccccccC-CCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCC---CCcEEEE
Q psy3407 68 IIEAAGKELKIGTMYDINRDQYIGFGPFDTTTR-YGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDS---KLKAYGV 143 (749)
Q Consensus 68 ~f~~A~~eLG~~~~~D~N~g~~~G~~~c~~~c~-~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~---ggrAtGV 143 (749)
.|.++++++|++...|+|++...|++.++.++. .|.|+|++.+||.|+++|+||+|++++.|+||++++ ++||+||
T Consensus 188 ~~~~a~~~~G~~~~~D~n~~~~~G~~~~~~t~~~~g~R~saa~ayL~p~~~r~NL~V~t~a~V~rIl~d~~~~~~ra~GV 267 (583)
T 3qvp_A 188 ALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDAAREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGV 267 (583)
T ss_dssp HHHHHHHTTTCCBCCCTTSSCCCEEECCCBSBCTTCBBCCHHHHHTTTTTTCTTEEEECSCEEEEEEEECSSSSCEEEEE
T ss_pred HHHHHHHHcCCCcCCCCCCCCCceecccceeEcCCCcEecHHHHHHHHhhcCCCcEEEcCCEEEEEEeccCCCCCEEEEE
Confidence 999999999999999999999999998887774 799999999999999999999999999999999984 6799999
Q ss_pred EEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCCCccccccccCcceeecCCCCCCcccccccceEEEEeCCCCc---
Q psy3407 144 EYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLPVGENLQDHVCFPGVLFSSNKDPA--- 220 (749)
Q Consensus 144 ~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIGpas~L~~~GIpvVaDLPVGRNLqDHp~v~~v~~~~~e~~~--- 220 (749)
+|.+.+|+.++++|+||||||||||+||||||+|||||+++|+++||+|++|+|||+|||||+.+. +.+.++.+..
T Consensus 268 ~~~~~~G~~~~v~A~kEVILsAGa~~SPqLL~lSGIGp~~~L~~~GI~vv~dLPVG~NLqDH~~~~-~~~~~~~~~~~~~ 346 (583)
T 3qvp_A 268 EFGTHKGNTHNVYAKHEVLLAAGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQTTAT-VRSRITSAGAGQG 346 (583)
T ss_dssp EEESSTTCEEEEEEEEEEEECSCTTTHHHHHHHTTBSCHHHHGGGTCCCSBCCCTTCCBBCCEEEE-EEEEECGGGCSBC
T ss_pred EEEecCCcEEEEEECCEEEEeCCccCCHHHHHHcCCCCHHHHHhCCCCceeeCccccchhhCccce-EEEEecCCccccc
Confidence 998558999999999999999999999999999999999999999999999999999999999887 7787764311
Q ss_pred -----cc----cchH--HHHH-HhhccC-ccccccceEEEEEecCC-------------CCCCCceeeeeccccCCcccc
Q psy3407 221 -----IT----LHYL--RYLK-VAALKG-ISTVEVAKVVGFINTKR-------------NSLYPNVELLSIRIPMNSKER 274 (749)
Q Consensus 221 -----~~----~~~~--~l~~-~~~r~G-~ts~~~~e~~~f~~s~~-------------~~~~Pdiq~~f~p~~~g~d~~ 274 (749)
.. ++.. .... ...+.| +.. ...+..+|.+... ....|..++.+.
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------- 416 (583)
T 3qvp_A 347 QAAWFATFNETFGDYSEKAHELLNTKLEQWAE-EAVARGGFHNTTALLIQYENYRDWIVNHNVAYSELFLD--------- 416 (583)
T ss_dssp EEEEEEEHHHHHGGGHHHHHHHHHHCHHHHHH-HHHHTTSCSCHHHHHHHHHHHHHHHHHSCCEEEEEEEE---------
T ss_pred cccccccHHHhhccchHHHHHHHHhhcchhhc-ccccccCccccHHHHhhhccchhhhccCCCCcceeeec---------
Confidence 00 0000 0000 011111 110 0000000100000 001111111110
Q ss_pred ccccccccceeeeeeeccCCCCeEEecCCCCCCCceE-EEeecCCCCCcccHHHHHHHHHHHHHHHHHHHH-hcCCCCcc
Q psy3407 275 NNGKSVMGSLFGQEVLVDDNDKDVIASPTNLTAKVQT-IFESFTKMSETNININKKQFMSNMDKVFETIKT-KFEPFAEG 352 (749)
Q Consensus 275 ~~~~~~~g~~i~i~l~lP~srGrVtL~skDp~G~PvI-~i~Y~s~~~~p~~~~D~a~L~egir~arrIL~A-Aga~~~~~ 352 (749)
....+.+.+..++|.+||+|+|+++||++.|.| +++|+.+ | .|++.++++++.+++|+++ +++.+...
T Consensus 417 ----~~~~~~~~~~~~~P~SrG~v~l~s~dp~~~P~i~~~~yl~~---~---~D~~~~~~~~~~~~~i~~~~~~~~~~~~ 486 (583)
T 3qvp_A 417 ----TAGVASFDVWDLLPFTRGYVHILDKDPYLHHFAYDPQYFLN---E---LDLLGQAAATQLARNISNSGAMQTYFAG 486 (583)
T ss_dssp ----CTTSEEEEEEESSCCCCBEEEESSSCGGGCCEEEECCTTCS---H---HHHHHHHHHHHHHHHHHTSTTHHHHEEE
T ss_pred ----cCCCceeeeeecccCCceEEEecCCCCCCCcccccCCCCCC---H---HHHHHHHHHHHHHHHHHhCcchhhcccc
Confidence 001223334458999999999999999999999 9999999 8 9999999999999999986 33333333
Q ss_pred cccCCC------CCC----cccCCC--CCCccccccCCCCCCCCCCCCCCccCCCCCccCCCCcc
Q psy3407 353 EIPIES------RSS----YWNNNS--DGTSKEACEMGKLGSSTPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 353 eis~~s------~~~----~~~~~~--~Gt~mGTcRMG~D~~~~p~PktSVVD~~grsHD~~NL~ 405 (749)
+..+.. ..+ ++..+. ..|.+||||||.+ ++.+|||++||.|+++||+
T Consensus 487 ~~~pg~~~~~~~sd~~~~~~~r~~~~t~~H~~GTc~Mg~~------~~~~VVD~~lrV~Gv~~Lr 545 (583)
T 3qvp_A 487 ETIPGDNLAYDADLSAWTEYIPYHFRPNYHGVGTCSMMPK------EMGGVVDNAARVYGVQGLR 545 (583)
T ss_dssp EEESGGGSCTTCCHHHHHHHGGGSCEECSCCBCTTCBSCG------GGTCSBCTTCBBTTCBSEE
T ss_pred ccCCCcccccCCCHHHHHHHHHhccCCCcCCCCceeCCCC------CCCceECCCCeEecCCCeE
Confidence 322211 011 111111 1349999999998 6899999999999999997
No 3
>3q9t_A Choline dehydrogenase and related flavoproteins; glucose-methanol-choline oxidoreductase family, formate OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A {Aspergillus oryzae}
Probab=100.00 E-value=1.3e-59 Score=535.42 Aligned_cols=386 Identities=19% Similarity=0.284 Sum_probs=303.9
Q ss_pred CEEEcCChhhhHHHHHcCCCCCCccchHHHHHHhhcCCCCCCC--C--CCCCCCCCCcccCCCCCC---ChHHHHHHHHH
Q psy3407 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQ--D--AAFHNTGGYLTVSPRLSP---DETVKIIEAAG 73 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~lG~~GWSYddLePYY~KaE~~~~gvsg--~--~~~hG~~GPl~V~~P~~~---~p~~~~f~~A~ 73 (749)
|+|+||++.|||.|+++|++||+|++++|||+|+|++ ..... . ...||.+||++++++.+. .++.+.|.+++
T Consensus 99 m~~~rg~~~dyd~W~~~G~~gW~~~~~lpyf~k~e~~-~~~~~~~~~~~~~hG~~Gpl~v~~~~~~~~~~~~~~~~~~a~ 177 (577)
T 3q9t_A 99 FTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATY-HDDPRLYSPELEKIGGGGPIPISHAELIDEMAPFRENLTKAW 177 (577)
T ss_dssp CEECCCCHHHHHTTHHHHCGGGSHHHHHHHHHHTEEE-ECTTCCSCGGGGGGCCSCSEEEEECCCCGGGHHHHHHHHHHH
T ss_pred eEeccCCHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc-CCCccccCCccccCCCCCCEEeeCCCCCcccchHHHHHHHHH
Confidence 8999999999999999999999999999999999998 54321 1 236899999999877643 45888999999
Q ss_pred HHcCCCCCCCCCCCCCccccccccccCCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCC-CCcEEEEEEEecCCeE
Q psy3407 74 KELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDS-KLKAYGVEYINSQGKI 152 (749)
Q Consensus 74 ~eLG~~~~~D~N~g~~~G~~~c~~~c~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~-ggrAtGV~y~d~~G~~ 152 (749)
+++|++...|+|++...|++.++.++..|.|+++. +|+ ++|+||+|++++.|+||++++ +++|+||++.+.+|+.
T Consensus 178 ~~~G~~~~~d~n~~~~~G~~~~~~~~~~g~R~s~~-~~l---~~r~Nl~v~~~a~v~ri~~~~~~~~a~GV~~~~~~g~~ 253 (577)
T 3q9t_A 178 KSMGQPLIENIYDGEMDGLTHCCDTIYRGQRSGSF-LFV---KNKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNE 253 (577)
T ss_dssp HHTTCCBCSCCSSSCCCEEEECEESEETTEECCGG-GGS---SSCTTEEEECSEEEEEEEEETTTTEEEEEEEEETTSCE
T ss_pred HHcCCCcCCCCCCCCcCeEEeecceecCCeEeeHH-HHH---hcCCCeEEEcCcEEEEEEEeCCCCEEEEEEEEeCCCcE
Confidence 99999999999999999999988889999999865 464 568999999999999999984 5799999999856899
Q ss_pred EEEEeccEEEEccCCCCChHHHhhcCCCccccccccCcceeecCC-CCCCcccccccceEEEEeCCCCccc---c-chHH
Q psy3407 153 CHVNSTREVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAIT---L-HYLR 227 (749)
Q Consensus 153 ~~V~ArKeVILAAGAIeTPrLLL~SGIGpas~L~~~GIpvVaDLP-VGRNLqDHp~v~~v~~~~~e~~~~~---~-~~~~ 227 (749)
++++|+||||||||+|+||+|||+|||||+++|+++||+|++|+| ||+|||||+.+. +.+.++++.... . ....
T Consensus 254 ~~v~A~keVILsaGa~~sp~lL~~SGIGp~~~L~~~GI~vv~dlP~VG~nl~DH~~~~-~~~~~~~~~~~~~~~~~~~~~ 332 (577)
T 3q9t_A 254 LNFFADREVILSQGVFETPKLLMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGVP-FVLRVKDGFGMDDVLLRHGPK 332 (577)
T ss_dssp EEEEEEEEEEECSHHHHHHHHHHHTTEECHHHHHTTTCCCSEECTTTTEEEBCCEEEE-EEEEECTTSSSHHHHTSCSHH
T ss_pred EEEEeeeEEEEcccccCChHHHHHcCCCCHHHHHHcCCCeeccCchhhhhhhcCccee-EEEEeCCCCccchhhhcchhH
Confidence 999999999999999999999999999999999999999999999 999999999887 788887654320 0 0111
Q ss_pred ----HHH-HhhccC-ccccccceEEEEEecCC----------------------CCCCCceeeeeccccCCccc--cccc
Q psy3407 228 ----YLK-VAALKG-ISTVEVAKVVGFINTKR----------------------NSLYPNVELLSIRIPMNSKE--RNNG 277 (749)
Q Consensus 228 ----l~~-~~~r~G-~ts~~~~e~~~f~~s~~----------------------~~~~Pdiq~~f~p~~~g~d~--~~~~ 277 (749)
... ...++| ++ .+..+..+|.++.. ....|++++++.+....... ....
T Consensus 333 ~~~~~~~y~~~~~Gpl~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 411 (577)
T 3q9t_A 333 RDAVVSAYNKNRSGPVG-SGLLELVGFPRIDKYLEKDAEYRKAKAANGGKDPFSPLGQPHFELDFVCMFGTAFQWHFPTP 411 (577)
T ss_dssp HHHHHHHHHHHSCSGGG-CCSEEEEEECCCHHHHTTCHHHHHHHHHTTTSCSSCTTSCCSEEEEEESSCCGGGCSSSCCC
T ss_pred HHHHHHHHHhcCCCCcc-cchhheeEEeecChhhhcchhhhhhhhccccccccCCCCCceEEEEecccccccccccccCC
Confidence 111 456788 76 45567778865421 13567888777643211000 0001
Q ss_pred cccccceeeeeeeccCCCC-eEEecCCCCCCCceEEEeecCCCCCcccHHHHHHHHHHHHHHHHHH-HH-hcCCCCcccc
Q psy3407 278 KSVMGSLFGQEVLVDDNDK-DVIASPTNLTAKVQTIFESFTKMSETNININKKQFMSNMDKVFETI-KT-KFEPFAEGEI 354 (749)
Q Consensus 278 ~~~~g~~i~i~l~lP~srG-rVtL~skDp~G~PvI~i~Y~s~~~~p~~~~D~a~L~egir~arrIL-~A-Aga~~~~~ei 354 (749)
.....+.+.+.+++|.||| +|+|+++||++.|.|+++|+.+ | .|++.++++++.+++|+ ++ ++..+...+.
T Consensus 412 ~~~~~~~~~~~l~~P~SrGG~V~L~S~dp~~~P~i~p~yl~~---~---~D~~~~~~~~~~~~~i~~~~~~~~~~~~~e~ 485 (577)
T 3q9t_A 412 KTGDHLTVVVDLVRPISDPGEVTLNSADPFQQPNINLNFFAN---D---LDIIAMREGIRFSYDLLFKGEGFKDLVESEY 485 (577)
T ss_dssp SSSEEEEEEEEESSCCSCCEEEECSCSCTTSCCEEECCTTCS---H---HHHHHHHHHHHHHHHHHHHSTTGGGTEEEEE
T ss_pred CCCCEEEEEEEeeeccccCCEEEeCCCCCCCCceEecCcCCC---c---cHHHHHHHHHHHHHHHHHhChhhhhcccccc
Confidence 1123456666789999999 9999999999999999999999 8 99999999999999999 65 4444444444
Q ss_pred cCCCC---CCccc----CC--CCCCccccccCCCCCCCCCCCCCCccCCCCCccCCCCcc
Q psy3407 355 PIESR---SSYWN----NN--SDGTSKEACEMGKLGSSTPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 355 s~~s~---~~~~~----~~--~~Gt~mGTcRMG~D~~~~p~PktSVVD~~grsHD~~NL~ 405 (749)
.+... .+.|. .+ ...|.+||||||.+ ++++|||+++|.|+++||+
T Consensus 486 ~p~~~~~sd~~~~~~ir~~~~t~~H~~GTc~Mg~~------~~~~VVD~~lrV~Gv~~Lr 539 (577)
T 3q9t_A 486 PWEMPLDSDKEMHRAVLDRCQTAFHPTGTARLSKN------IDQGVVDPKLKVHGIKKLR 539 (577)
T ss_dssp SSCCCTTCHHHHHHHHHHHCEECSCCBCTTCBCSS------TTTCSBCTTCBBTTCBSEE
T ss_pred CCCCCcCCHHHHHHHHHhccccccccccceecCCC------CCCceECCCCeEeCCCCcE
Confidence 32210 11111 00 01249999999998 5799999999999999997
No 4
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP: c.3.1.2 d.16.1.1
Probab=100.00 E-value=1.8e-60 Score=542.15 Aligned_cols=389 Identities=19% Similarity=0.187 Sum_probs=289.8
Q ss_pred CEEEcCChhhhHHHHHc-CCCCCCccchHHHHHHhhcCCCCCC---------CCCCCCCCCCCcccCCC---CCCChHHH
Q psy3407 1 MLYQRGNDRDYNDWERA-GNPGWGFKHILPYFLKSEDFQDISR---------QDAAFHNTGGYLTVSPR---LSPDETVK 67 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~l-G~~GWSYddLePYY~KaE~~~~gvs---------g~~~~hG~~GPl~V~~P---~~~~p~~~ 67 (749)
|+|+|+++.|||.|+++ |++||+|++|+|||+|+|++ .+++ .++.+||.+||+++++| .+.++..+
T Consensus 113 ~~~~R~~~~D~d~W~~~~G~~gW~~~~l~pyf~k~E~~-~~~~~~~~~~G~~~~~~~~g~~Gpl~v~~~~~~~~~~~~~~ 191 (587)
T 1gpe_A 113 DSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAA-RTPTAAQLAAGHSFNATCHGTNGTVQSGARDNGQPWSPIMK 191 (587)
T ss_dssp CEECCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHTEEE-CCCCHHHHHHTCCCCGGGCCBSSSEEEBCCCCSSCBCTHHH
T ss_pred eEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhcc-cCCcccccccccccCccccCCCCCEEEccCCCcCCCCHHHH
Confidence 79999999999999998 99999999999999999998 7652 13567999999999876 36789999
Q ss_pred HHHHHHHHcCCCCCCCCCCCCCcccccccccc-CCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCC-C--CcEEEE
Q psy3407 68 IIEAAGKELKIGTMYDINRDQYIGFGPFDTTT-RYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDS-K--LKAYGV 143 (749)
Q Consensus 68 ~f~~A~~eLG~~~~~D~N~g~~~G~~~c~~~c-~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~-g--grAtGV 143 (749)
.|.++++++|++...|+|++...|++.|+.++ ..|+|+|++.+||.++++++|++|++++.|+||++++ + ++|+||
T Consensus 192 ~~~~a~~~~G~~~~~d~n~~~~~G~~~~~~~~~~~g~R~sa~~~~l~~~~~~~nl~i~~~~~v~~l~~~~~~~~~~~~GV 271 (587)
T 1gpe_A 192 ALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDAARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGV 271 (587)
T ss_dssp HHHHHHHHTTCCBSCCTTSSCCCEEECCEESBCTTCCBCCHHHHHTTTTTTCTTEEEEESCEEEEEEEEEETTEEEEEEE
T ss_pred HHHHHHHHcCCCcCCCCCCCCCCEEEecceEECCCCcccCHHHHHHHHhhcCCCcEEEcCCEEEEEEECCCCCCCEEEEE
Confidence 99999999999999999999889999988764 5799999999999888889999999999999999983 2 599999
Q ss_pred EEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCCCccccccccCcceeecCCCCCCcccccccceEEEEeCCCCcccc
Q psy3407 144 EYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLPVGENLQDHVCFPGVLFSSNKDPAITL 223 (749)
Q Consensus 144 ~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIGpas~L~~~GIpvVaDLPVGRNLqDHp~v~~v~~~~~e~~~~~~ 223 (749)
++.+.+|+.++++|+|+||||||+|+||+|||+|||||+++|+++||+|++|+|||||||||+... +.+.++++... .
T Consensus 272 ~~~~~~g~~~~v~A~k~VILaaG~~~sp~lL~~SGIGp~~~L~~~gI~vv~dlPVG~nL~DH~~~~-~~~~~~~~~~~-~ 349 (587)
T 1gpe_A 272 NFGTNKAVNFDVFAKHEVLLAAGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQTTTT-VSSRASSAGAG-Q 349 (587)
T ss_dssp EEEEETTEEEEEEEEEEEEECSCTTTHHHHHHHTTEECHHHHHHTTCCCSEECCTTCSBBCCEEEE-EEEEECGGGCS-B
T ss_pred EEEeCCCcEEEEEecccEEEccCCCCCHHHHHhCCCCCHHHHHhCCCCeEEeCCCCcchhcCcccc-eEEEeCCCccc-c
Confidence 998658999999999999999999999999999999999999999999999999999999999887 77777644211 0
Q ss_pred ch-----HHHHH-HhhccC-ccccccceEEEEEecC------CCCC--CCceeeeeccc-cCCcccccc-ccccccceee
Q psy3407 224 HY-----LRYLK-VAALKG-ISTVEVAKVVGFINTK------RNSL--YPNVELLSIRI-PMNSKERNN-GKSVMGSLFG 286 (749)
Q Consensus 224 ~~-----~~l~~-~~~r~G-~ts~~~~e~~~f~~s~------~~~~--~Pdiq~~f~p~-~~g~d~~~~-~~~~~g~~i~ 286 (749)
.. ..... ...++| ++. ...+...|.+.. .... .|+++..+.+. .......+. ......+.+.
T Consensus 350 ~~~~~~~~~~~~~~~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 428 (587)
T 1gpe_A 350 GQAVFFANFTETFGDYAPQARDL-LNTKLDQWAEETVARGGFHNVTALKVQYENYRNWLLDEDVAFAELFMDTEGKINFD 428 (587)
T ss_dssp CEEEEEEEHHHHHGGGHHHHHHH-HHHSHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHHSCCEEEEEEEECTTEEEEE
T ss_pred cchHHHHHHHHHHHhCCCCCccc-cccceeeEeecccccccccccccccccHHHHhhhccCCCCcceeeeecCCCcEEEE
Confidence 00 00001 111223 210 001111122111 0000 12222211110 000000000 0011234556
Q ss_pred eeeeccCCCCeEEecCCCCCCCc-eEEEeecCCCCCcccHHHHHHHHHHHHHHHHHHHHh-cCCCCcccccCCC------
Q psy3407 287 QEVLVDDNDKDVIASPTNLTAKV-QTIFESFTKMSETNININKKQFMSNMDKVFETIKTK-FEPFAEGEIPIES------ 358 (749)
Q Consensus 287 i~l~lP~srGrVtL~skDp~G~P-vI~i~Y~s~~~~p~~~~D~a~L~egir~arrIL~AA-ga~~~~~eis~~s------ 358 (749)
..+++|.++|+|+|+++||++.| .|+++|+.+ | +|++.++++++.+++|++++ +..+...+..+..
T Consensus 429 ~~~~~P~srG~V~L~s~dp~~~P~~i~~~y~~~---~---~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~pg~~~~~~~ 502 (587)
T 1gpe_A 429 LWDLIPFTRGSVHILSSDPYLWQFANDPKFFLN---E---FDLLGQAAASKLARDLTSQGAMKEYFAGETLPGYNLVQNA 502 (587)
T ss_dssp EEESSCCCCBEEEESSSCGGGTCEEEECCTTSS---H---HHHHHHHHHHHHHHHHHTSTTHHHHEEEEEESGGGSCTTC
T ss_pred EEecCCccceeEEeCCCCcccCccEeecccCCC---h---HHHHHHHHHHHHHHHHHcCcchhhhcccccCCCccccCCC
Confidence 67899999999999999999999 999999999 7 99999999999999999873 2222222211110
Q ss_pred CCCccc----C--CCCCCccccccCCCCCCCCCCCCCCccCCCCCccCCCCcc
Q psy3407 359 RSSYWN----N--NSDGTSKEACEMGKLGSSTPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 359 ~~~~~~----~--~~~Gt~mGTcRMG~D~~~~p~PktSVVD~~grsHD~~NL~ 405 (749)
..+.|. . ....|.+||||||.| |++||||++||.|+++|||
T Consensus 503 sd~~~~~~ir~~~~t~~H~~GTcrMG~~------~~~sVVD~~lrV~Gv~nLr 549 (587)
T 1gpe_A 503 TLSQWSDYVLQNFRPNWHAVSSCSMMSR------ELGGVVDATAKVYGTQGLR 549 (587)
T ss_dssp CHHHHHHHHHHSCEECSCCBCTTCBSCG------GGTCSBCTTCBBTTCBSEE
T ss_pred CHHHHHHHHHHhcCcccCccCccccCCC------CCCceECCCCEEECCCCcE
Confidence 011121 0 111349999999998 7999999999999999998
No 5
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently linked FAD, C4A-adduct, flavoprotein, oxidoreductase; HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A* 3ljp_A*
Probab=100.00 E-value=7.4e-58 Score=515.92 Aligned_cols=371 Identities=22% Similarity=0.292 Sum_probs=300.4
Q ss_pred CEEEcCChhhhHHHHH-cCCCCCCccchHHHHHHhhcCCCCCCCC-CCCCCCCCCcccCCCCCCChHHHHHHHHHHHcCC
Q psy3407 1 MLYQRGNDRDYNDWER-AGNPGWGFKHILPYFLKSEDFQDISRQD-AAFHNTGGYLTVSPRLSPDETVKIIEAAGKELKI 78 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~-lG~~GWSYddLePYY~KaE~~~~gvsg~-~~~hG~~GPl~V~~P~~~~p~~~~f~~A~~eLG~ 78 (749)
|+|+|+++.|||.|++ +|++||+|++|+|||+|+|++ .++ ++ ..+||..||+++..+.+..+..+.|.++++++|+
T Consensus 102 ~~~~R~~~~d~d~w~~~~G~~gW~~~~l~pyf~k~e~~-~~~-~~~~~~~g~~Gpl~v~~~~~~~~~~~~~~~a~~~~G~ 179 (546)
T 2jbv_A 102 CIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETN-EDA-GPDAPHHGDSGPVHLMNVPPKDPTGVALLDACEQAGI 179 (546)
T ss_dssp CBCCCCCHHHHHHHHHTTCCTTCSHHHHHHHHHHHEEE-TTC-BTTBTTSCBSCSEEEEECCSCCHHHHHHHHHHHHTTC
T ss_pred eEEecCCHHHHHHHHHhcCCCCCCHHHHHHHHHHHhhc-cCC-CCccccCCCCCCEEEecCCCCCHHHHHHHHHHHHCCC
Confidence 7899999999999998 799999999999999999998 652 22 4588999999988777789999999999999999
Q ss_pred CCCCCCCCCC--CccccccccccC-CCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEE
Q psy3407 79 GTMYDINRDQ--YIGFGPFDTTTR-YGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICH 154 (749)
Q Consensus 79 ~~~~D~N~g~--~~G~~~c~~~c~-~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~ 154 (749)
+.. |+|++. ..|++.|+.+|. +|+|+|+..+||.++.+++|++|++++.|+||+++++++++||++.+. +|+.++
T Consensus 180 ~~~-d~n~~~~~~~g~~~~~~~~~~~g~R~s~~~a~l~~a~~~~~~~i~~~~~V~~i~~~~~~~~~GV~~~~~~~g~~~~ 258 (546)
T 2jbv_A 180 PRA-KFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVEQENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHR 258 (546)
T ss_dssp CBC-CSSSSSCCSSEEEECEECBCTTSBBCCHHHHHTGGGTTCTTEEEECSCEEEEEEECTTSBEEEEEEESSTTSCEEE
T ss_pred Ccc-CCCCCCcCcceEEeeeeecCCCCeEcCHHHHHHHHHhcCCCcEEEeCCEEEEEEECCCCeEEEEEEEECCCCcEEE
Confidence 998 999887 889999999998 999999999999998888999999999999999984379999999873 288889
Q ss_pred EEeccEEEEccCCCCChHHHhhcCCCccccccccCcceeecCC-CCCCcccccccceEEEEeCCCCccccchHHHHHHhh
Q psy3407 155 VNSTREVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAITLHYLRYLKVAA 233 (749)
Q Consensus 155 V~ArKeVILAAGAIeTPrLLL~SGIGpas~L~~~GIpvVaDLP-VGRNLqDHp~v~~v~~~~~e~~~~~~~~~~l~~~~~ 233 (749)
++|+|+||||||+++||+||++|||||+++|+++||++++|+| ||+|||||+... +.+.++++... .
T Consensus 259 i~A~k~VIlaaG~~~sp~lL~~SGiG~~~~L~~~gi~~~~dlP~VG~nL~dH~~~~-~~~~~~~~~~~-----------~ 326 (546)
T 2jbv_A 259 LTARNEVVLSTGAIDTPKLLMLSGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGV-VQFEAKQPMVA-----------E 326 (546)
T ss_dssp EEEEEEEEECSHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTCSBBCCEECC-EEEEESSCCCS-----------C
T ss_pred EEeCccEEEecCccCCchhhhhcCCCchHHHHhcCCceEeeCcchhhhhhhCccce-EEEEecCCCcc-----------c
Confidence 9997799999999999999999999999999999999999999 999999999987 77777665321 0
Q ss_pred ccCccccccceEEEEEecCCCCCCCceeeeeccccCC---ccccccccccccceeeeeeeccCCCCeEEecCCCCCCCce
Q psy3407 234 LKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMN---SKERNNGKSVMGSLFGQEVLVDDNDKDVIASPTNLTAKVQ 310 (749)
Q Consensus 234 r~G~ts~~~~e~~~f~~s~~~~~~Pdiq~~f~p~~~g---~d~~~~~~~~~g~~i~i~l~lP~srGrVtL~skDp~G~Pv 310 (749)
. ....+..+|++.......|++++++.+..+. ...... ....++.+...+.+|.++|+|+|+++||++.|.
T Consensus 327 ~-----~~~~~~~~f~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~P~srG~V~L~s~dp~~~P~ 400 (546)
T 2jbv_A 327 S-----TQWWEIGIFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYP-TTENGFSLTPNVTHARSRGTVRLRSRDFRDKPM 400 (546)
T ss_dssp C-----SSSCCEEEEECSSTTCSSCSEEEEEESSCCCTTTGGGTCC-CCSSEEEEEEEETTCCCCBEEECSSSCTTSCCE
T ss_pred c-----cchhheEEEEecCCCCCCCceEEEeccccccccccccCcc-CCCCeEEEEEEEcccCcccEEEecCCCCCCCce
Confidence 0 1122345677765445678888877654331 000000 112345555678999999999999999999999
Q ss_pred EEEeecCCCCCcccHH--HHHHHHHHHHHHHHHHHHh-cCCCCcccccCCC---CCCcc--------cCCCCCCcccccc
Q psy3407 311 TIFESFTKMSETNINI--NKKQFMSNMDKVFETIKTK-FEPFAEGEIPIES---RSSYW--------NNNSDGTSKEACE 376 (749)
Q Consensus 311 I~i~Y~s~~~~p~~~~--D~a~L~egir~arrIL~AA-ga~~~~~eis~~s---~~~~~--------~~~~~Gt~mGTcR 376 (749)
|+++|+.+ + + |++.++++++.+++|++++ +..+...+..+.. ..+.| ... .|.+||||
T Consensus 401 I~~~y~~~---~---~~~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~p~~~~~sd~~~~~~ir~~~~~~--~H~~GTcr 472 (546)
T 2jbv_A 401 VDPRYFTD---P---EGHDMRVMVAGIRKAREIAAQPAMAEWTGRELSPGVEAQTDEELQDYIRKTHNTV--YHPVGTVR 472 (546)
T ss_dssp EECCTTCC---T---TCHHHHHHHHHHHHHHHHHTSGGGTTTEEEEEESCTTCCSHHHHHHHHHHHCEEC--SCCBCTTC
T ss_pred ecccccCC---C---chhHHHHHHHHHHHHHHHHcCcchhhcccccccCCCCCCCHHHHHHHHHhcCCcc--cccccccc
Confidence 99999999 7 8 9999999999999999984 4444433332211 00011 122 24999999
Q ss_pred CCCCCCCCCCCCCCccCCCCCccCCCCcc
Q psy3407 377 MGKLGSSTPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 377 MG~D~~~~p~PktSVVD~~grsHD~~NL~ 405 (749)
||.+. +++||||++||.|+++|||
T Consensus 473 MG~~~-----d~~~VVD~~lrV~Gv~nLr 496 (546)
T 2jbv_A 473 MGAVE-----DEMSPLDPELRVKGVTGLR 496 (546)
T ss_dssp BCCTT-----CTTCSBCTTCBBTTSBSEE
T ss_pred cCCCC-----CCCceECCCCEEECCCCeE
Confidence 99421 3899999999999999998
No 6
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding, oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Probab=100.00 E-value=3.5e-55 Score=484.80 Aligned_cols=368 Identities=22% Similarity=0.353 Sum_probs=289.6
Q ss_pred CEEEcCChhhhHHHHHc-CCCCCCccchHHHHHHhhcCCCCCCCCCCCCCCCCCcccCCCC-CCChHHHHHHHHHHHcCC
Q psy3407 1 MLYQRGNDRDYNDWERA-GNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRL-SPDETVKIIEAAGKELKI 78 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~l-G~~GWSYddLePYY~KaE~~~~gvsg~~~~hG~~GPl~V~~P~-~~~p~~~~f~~A~~eLG~ 78 (749)
|+|+|+++.|||.|++. |+++|+|++++|||+++|++ .+.. ...++..||..+..+. ...|+.+.|.++++++|+
T Consensus 106 ~~~~R~~~~Dfd~w~~~~~~~~w~~~~~~pyf~~~E~~-~~~~--~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~G~ 182 (526)
T 3t37_A 106 MGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDH-PLGG--DGIHGKGGPLPIHLPADEVSPLARAFIEAGASLGL 182 (526)
T ss_dssp CBCCCCCHHHHHHHHHHHSCGGGSHHHHHHHHHHHEEC-TTTT--SSSSCSSCSEECBCCSTTSCHHHHHHHHHHHHTTC
T ss_pred CEEecCCHHHHHHHHHhcCCCCCChhhhhhhhhhhhhc-cCCC--ccccCcCCCcCcccccccCCHHHHHHHHHHHHcCC
Confidence 78999999999999875 88999999999999999998 5432 4567788888776554 678999999999999999
Q ss_pred CCCCCCCCCCCccccccccccCCCcccchhhhhhhh-hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEe
Q psy3407 79 GTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEP-AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNS 157 (749)
Q Consensus 79 ~~~~D~N~g~~~G~~~c~~~c~~GaR~Saa~ayL~p-a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~A 157 (749)
+...+++.+...|++.|+.+|..|.|.|+..+|+.+ ++.|+||+|++++.|+||+++ +++|+||++.+ .+....+.|
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~g~r~s~~~~~~~~~~~~r~nl~v~~~~~v~~i~~~-~~~a~gv~~~~-~~~~~~~~a 260 (526)
T 3t37_A 183 PRLEGHNSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRGRKNLTILTGSRVRRLKLE-GNQVRSLEVVG-RQGSAEVFA 260 (526)
T ss_dssp CBCSSSCSSCCBSBCCCCBCEETTEECCHHHHHSCHHHHTCTTEEEECSCEEEEEEEE-TTEEEEEEEEE-TTEEEEEEE
T ss_pred CcccCCCCCcccccccccccccCCcccccccccccccccCCCCeEEEeCCEEEEEEec-CCeEEEEEEEe-cCceEEEee
Confidence 999899998888999999899999999999999866 467999999999999999998 68999999988 667778888
Q ss_pred ccEEEEccCCCCChHHHhhcCCCccccccccCcceeecCC-CCCCcccccccceEEEEeCCCCccccchHHHHHHhhccC
Q psy3407 158 TREVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAITLHYLRYLKVAALKG 236 (749)
Q Consensus 158 rKeVILAAGAIeTPrLLL~SGIGpas~L~~~GIpvVaDLP-VGRNLqDHp~v~~v~~~~~e~~~~~~~~~~l~~~~~r~G 236 (749)
||||||||||+||+|||+|||||+.+|.++||++++|+| ||+|||||+...+..+...++....
T Consensus 261 -~~VILsAGai~SP~LLl~SGig~~~~l~~~gi~vv~dlp~VG~nl~DH~~~~~~~~~~~~~~~~~-------------- 325 (526)
T 3t37_A 261 -DQIVLCAGALESPALLMRSGIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARKPVPPS-------------- 325 (526)
T ss_dssp -EEEEECSHHHHHHHHHHHTTEECHHHHHHHTCCCSEECTTTTCSBBCCEEEEEEEEEESSCCCCC--------------
T ss_pred -cceEEcccccCCcchhhhccCCchhhhhccCCCeEecCCccccccccccccceeEEeccCCcchH--------------
Confidence 999999999999999999999999999999999999999 9999999997652344444443220
Q ss_pred ccccccceEEEEEecCC--CCCCCceeeeeccccCCccccccccccccceeeeeeeccCCCCeEEecCCCCCCCceEEEe
Q psy3407 237 ISTVEVAKVVGFINTKR--NSLYPNVELLSIRIPMNSKERNNGKSVMGSLFGQEVLVDDNDKDVIASPTNLTAKVQTIFE 314 (749)
Q Consensus 237 ~ts~~~~e~~~f~~s~~--~~~~Pdiq~~f~p~~~g~d~~~~~~~~~g~~i~i~l~lP~srGrVtL~skDp~G~PvI~i~ 314 (749)
.....+...|.+... ....|++++.+...+...+..........+.+...+.+|.++|+|+++++||.+.|.++++
T Consensus 326 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~srG~v~~~s~dp~~~p~i~~~ 403 (526)
T 3t37_A 326 --RLQHSESMAYMRADSFTAAGQPEIVVGCGVAPIVSESFPAPAAGSAYSLLFGITHPTSRGSVRISGPELGDRLIIDPA 403 (526)
T ss_dssp --SSCSEEEEEEECSSCSSCCSSCCEEEEEESSCCCCTTSCCCCTTSEEEEEEEESSCCCCBEEECSSSSTTSCCEEECC
T ss_pred --hhcchhhhhhhhcccccccCCcceeeecccccccccccccccCCcceeeeccccCccccCcceeccCCCccCceeccc
Confidence 011122334444332 1345666655443332222211122233455566778999999999999999999999999
Q ss_pred ecCCCCCcccHHHHHHHHHHHHHHHHHHHH-hcCCCCcccccCCCCCC------cc----cCCCCCCccccccCCCCCCC
Q psy3407 315 SFTKMSETNININKKQFMSNMDKVFETIKT-KFEPFAEGEIPIESRSS------YW----NNNSDGTSKEACEMGKLGSS 383 (749)
Q Consensus 315 Y~s~~~~p~~~~D~a~L~egir~arrIL~A-Aga~~~~~eis~~s~~~------~~----~~~~~Gt~mGTcRMG~D~~~ 383 (749)
|+.+ + .|++.++++++.+++|+++ ++..+...++.+..... ++ .... |++||||||+|
T Consensus 404 ~~~~---~---~d~~~~~~~~~~~r~i~~~~~~~~~~~~~~~pg~~~~~~~~~~~ir~~~~t~~--H~~GTcrMG~d--- 472 (526)
T 3t37_A 404 YLQT---G---RDRERFRRALEASRTIGHRDELAGWRERELLPGTPNSAAEMDDFIARSVITHH--HPCGTCRMGKD--- 472 (526)
T ss_dssp TTCS---H---HHHHHHHHHHHHHHHHHTCGGGTTTEEEECSSCCCCSHHHHHHHHHHHEEECS--CCBCTTCBCSS---
T ss_pred cCCC---H---HHHHHHHHHHHHHHHHHcChhhhhccccccCCCCCCCHHHHHHHHHhcCccCc--ccCccccCCCC---
Confidence 9998 7 9999999999999999987 55555555443221100 00 0112 49999999998
Q ss_pred CCCCCCCccCCCCCccCCCCcc
Q psy3407 384 TPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 384 ~p~PktSVVD~~grsHD~~NL~ 405 (749)
| +||||++||+|+++|||
T Consensus 473 ---~-~sVVD~~~rV~Gv~nL~ 490 (526)
T 3t37_A 473 ---P-DAVVDANLRLKALDNLF 490 (526)
T ss_dssp ---T-TCSBCTTCBBTTCSSEE
T ss_pred ---C-CccCCCCCEEcCCCCeE
Confidence 6 89999999999999998
No 7
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=100.00 E-value=4.3e-44 Score=401.35 Aligned_cols=366 Identities=18% Similarity=0.187 Sum_probs=255.7
Q ss_pred CEEEcCChhhhHH---HHHcCCCCCCccchHHHHHHhhcCCCCCCCCCCCCCCCCCcccCCCCCCChHHHHHHHHHHHcC
Q psy3407 1 MLYQRGNDRDYND---WERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRLSPDETVKIIEAAGKELK 77 (749)
Q Consensus 1 Miy~RGsp~DFD~---Wa~lG~~GWSYddLePYY~KaE~~~~gvsg~~~~hG~~GPl~V~~P~~~~p~~~~f~~A~~eLG 77 (749)
|+|+|+++.|||. | +.+|+|++ |||+|+|+. .+. ...++..|+ .+..+..+.|.++++++|
T Consensus 102 ~~~~r~~~~d~d~~~~W----~~~w~~~~--p~~~k~e~~-~~~---~~~~~~~g~------~~~~~~~~~~~~a~~~~G 165 (546)
T 1kdg_A 102 ALYWYPNDGDFSSSVGW----PSSWTNHA--PYTSKLSSR-LPS---TDHPSTDGQ------RYLEQSFNVVSQLLKGQG 165 (546)
T ss_dssp CBCCCCCGGGGCGGGTC----CGGGSCCH--HHHHHHHHH-SCC---BSCCSTTSC------CCSCHHHHHHHHHHHTTT
T ss_pred eEEecCChHHhcCcccC----ccccCccc--HHHHHHHhc-CCC---CccCCCCCC------ccCCHHHHHHHHHHHHCC
Confidence 7899999999998 8 36899999 999999996 431 112222332 245678899999999999
Q ss_pred CCCCCCCCC--CCCccccccccccCCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCe--E
Q psy3407 78 IGTMYDINR--DQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGK--I 152 (749)
Q Consensus 78 ~~~~~D~N~--g~~~G~~~c~~~c~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~--~ 152 (749)
++..+..++ ....|++.++.+|.+|.|+|+..+||.++++++|++|++++.|++|+++ +++++||++.+. +|+ +
T Consensus 166 ~~~~~~~~~~~~~~~g~~~~~~~~~~g~R~s~~~~~l~~~~~~~~~~i~~~~~V~~i~~~-~~~~~gV~~~~~~~g~~~~ 244 (546)
T 1kdg_A 166 YNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALARPNFTFKTNVMVSNVVRN-GSQILGVQTNDPTLGPNGF 244 (546)
T ss_dssp CEECCGGGSTTCCTTEEEECCBCEETTEECHHHHTHHHHHHTCTTEEEECSCCEEEEEEE-TTEEEEEEESCTTSSGGGE
T ss_pred CCcCCccCCcCCCCcEEeeeeeccCCCcccCHHHHHHHHHhhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEecCCCceeE
Confidence 976531111 1346778888889999999999999999888899999999999999998 579999999763 464 3
Q ss_pred EEEEeccEEEEccCCCCChHHHhhcCCCcccccccc------Cccee-----ecCCCCCCcccccccceEEEEeCCCC-c
Q psy3407 153 CHVNSTREVILSAGAVGSPQLLMLSGIGIQKHLKEK------NITVI-----KDLPVGENLQDHVCFPGVLFSSNKDP-A 220 (749)
Q Consensus 153 ~~V~ArKeVILAAGAIeTPrLLL~SGIGpas~L~~~------GIpvV-----aDLPVGRNLqDHp~v~~v~~~~~e~~-~ 220 (749)
..+.++|+||||||+++||+||++|||||+++|+.+ ||+++ +|+|||+|||||+... +.+. ..+. .
T Consensus 245 ~~v~~~~~VIlaaG~~~sp~lL~~sGig~~~~L~~~gn~s~~GI~v~~~~~~~dlpVG~nL~DH~~~~-~~~~-~~~~~~ 322 (546)
T 1kdg_A 245 IPVTPKGRVILSAGAFGTSRILFQSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSIN-LVFT-HPSIDA 322 (546)
T ss_dssp EEEEEEEEEEECSHHHHHHHHHHHTTBSCHHHHHHHHTSHHHHHHSCCGGGCBCCCTTTTBBCCCCEE-EEEE-CTTCCC
T ss_pred EEEEeCCEEEEcCChhcCHHHHHHcCCCcHHHHHHhhccccCCcccccccccccCCcccCcccCccee-EEEe-cCCccc
Confidence 456566999999999999999999999999999999 69985 8999999999999886 6666 2222 1
Q ss_pred c-cc-----ch--HHHHH-HhhccC-ccccccceEEEEEecCCCCC--CCceeeeeccccCCccccccccccccceeeee
Q psy3407 221 I-TL-----HY--LRYLK-VAALKG-ISTVEVAKVVGFINTKRNSL--YPNVELLSIRIPMNSKERNNGKSVMGSLFGQE 288 (749)
Q Consensus 221 ~-~~-----~~--~~l~~-~~~r~G-~ts~~~~e~~~f~~s~~~~~--~Pdiq~~f~p~~~g~d~~~~~~~~~g~~i~i~ 288 (749)
. .. .. ..... ...++| ++ ...... .|+....... .++++..+.+................+.+...
T Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (546)
T 1kdg_A 323 YENWADVWSNPRPADAAQYLANQSGVFA-GASPKL-NFWRAYSGSDGFTRYAQGTVRPGAASVNSSLPYNASQIFTITVY 400 (546)
T ss_dssp GGGGTTTTTSCCHHHHHHHHHHSCSGGG-SCSCCE-EEEEEEECTTSCEEEEEEEEEESCSCCCCSSCCCGGGEEEEEEE
T ss_pred ccchhhhhcchhHHHHHHHHHcCCcccc-cCCcce-EEEEccCCCCcchhhhhheecccccccccccccCCCCeEEEEee
Confidence 0 00 00 01111 344667 54 222222 3444321111 12344333332111011000111234555556
Q ss_pred eecc-CCCCeEEecCCCCCCCceEEEeecCCCCCcccHHHHHHHHHHHHHHHHHHHHhcCCCCcccccC--CCCCCc---
Q psy3407 289 VLVD-DNDKDVIASPTNLTAKVQTIFESFTKMSETNININKKQFMSNMDKVFETIKTKFEPFAEGEIPI--ESRSSY--- 362 (749)
Q Consensus 289 l~lP-~srGrVtL~skDp~G~PvI~i~Y~s~~~~p~~~~D~a~L~egir~arrIL~AAga~~~~~eis~--~s~~~~--- 362 (749)
..+| .++|+|+|+++| ..|.++.+|+.+ | .|++.++++++.++++++++.... ...+. .+..+.
T Consensus 401 ~~~p~~srG~v~L~s~~--~~~~i~~~y~~~---~---~D~~~~~~~~~~~~~~~~~~~~~~--~~~p~~~~~~~~~~~~ 470 (546)
T 1kdg_A 401 LSTGIQSRGRIGIDAAL--RGTVLTPPWLVN---P---VDKTVLLQALHDVVSNIGSIPGLT--MITPDVTQTLEEYVDA 470 (546)
T ss_dssp ECTTCCCCBEEEECTTC--CEEEEECCTTCS---H---HHHHHHHHHHHHHTTTGGGSTTCE--EEESCTTSCHHHHHHH
T ss_pred ecCCCCCCceEecCCCC--CCCcccccccCC---c---hHHHHHHHHHHHHHHHhcCCCccc--ccCCCCCCCHHHHHHH
Confidence 7788 999999999887 567777889998 7 999999999999999998753111 00100 000000
Q ss_pred c----cCCCCCCccccccCCCCCCCCCCCCCCccCCCCCccCCCCcc
Q psy3407 363 W----NNNSDGTSKEACEMGKLGSSTPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 363 ~----~~~~~Gt~mGTcRMG~D~~~~p~PktSVVD~~grsHD~~NL~ 405 (749)
+ ... .|.+||||||.| |++||||++||.|+++|||
T Consensus 471 ~~~~~~t~--~H~~GTcrMG~~------~~~~VVD~~lrV~Gv~nLr 509 (546)
T 1kdg_A 471 YDPATMNS--NHWVSSTTIGSS------PQSAVVDSNVKVFGTNNLF 509 (546)
T ss_dssp SCGGGGCC--SCCBCTTCBCSC------TTTCSBCTTCBBTTCSSEE
T ss_pred HHHhcCcc--cccccceecCCC------CCCeeECCCCeEccCCCcE
Confidence 0 122 249999999998 6999999999999999998
No 8
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond, cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A {Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A* 3gdn_A*
Probab=100.00 E-value=5.6e-43 Score=393.96 Aligned_cols=340 Identities=21% Similarity=0.227 Sum_probs=233.2
Q ss_pred CEEEcCChhhhHHHHHcCCCCCCccchHHHHHHhhcCCCCCCCCCCCCCCCCCcccCCCCCCChHHHHHHHHHHHcCCCC
Q psy3407 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRLSPDETVKIIEAAGKELKIGT 80 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~lG~~GWSYddLePYY~KaE~~~~gvsg~~~~hG~~GPl~V~~P~~~~p~~~~f~~A~~eLG~~~ 80 (749)
|+|+|+++.||+.+ | .+|+|++++|||+++|+. .+. + +...+..+.|.++++++|++.
T Consensus 112 ~~~~R~~~~d~~~~---G-~~W~~~~~~p~~~~~e~~-~~~----------~-------~~~~~~~~~~~~a~~~~G~~~ 169 (536)
T 1ju2_A 112 GVYARANTSIYSAS---G-VDWDMDLVNQTYEWVEDT-IVY----------K-------PNSQSWQSVTKTAFLEAGVHP 169 (536)
T ss_dssp CEECBCCTTSSTTS---S-SCCCHHHHHHHHHHHHHH-HCB----------C-------CCCCHHHHHHHHHHHHTTCCC
T ss_pred eEEEeCCHHHHhhc---c-CCCChHHHHHHHHhhhcc-cCC----------C-------CCCCcHHHHHHHHHHHcCCCC
Confidence 78999999999742 2 249999999999999987 321 1 124577889999999999965
Q ss_pred CCCC----CCCCCccccccccccCCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCCC--CcEEEEEEEecCCeEEE
Q psy3407 81 MYDI----NRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSK--LKAYGVEYINSQGKICH 154 (749)
Q Consensus 81 ~~D~----N~g~~~G~~~c~~~c~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~g--grAtGV~y~d~~G~~~~ 154 (749)
.... +.+...|.+. .+.+|.|++++. |++. ++++|++|++++.|+||+++++ ++|+||++.+.+|+.++
T Consensus 170 ~~~~~~~~~~g~~~g~~~---~~~~g~r~s~~~-~~~~-~~~~~~~v~~~~~v~~i~~~~~~~~~~~GV~~~~~~g~~~~ 244 (536)
T 1ju2_A 170 NHGFSLDHEEGTRITGST---FDNKGTRHAADE-LLNK-GNSNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQ 244 (536)
T ss_dssp EEEECCBCCSEEEECEES---BCTTSBBCCGGG-GGGG-SCTTTEEEEESCEEEEEEECCSSSCBEEEEEEECTTSCEEE
T ss_pred CCCcccCCCCCceeeeEE---ECCCCeEecHHH-hhhh-hcCCCcEEEeCCEEEEEEECCCCCCEEEEEEEEeCCCceEE
Confidence 3211 1111122222 236899999877 7755 5789999999999999999843 49999999876677766
Q ss_pred EE--eccEEEEccCCCCChHHHhhcCCCccccccccCcceeecCC-CCCCcccccccceEEEEeCCCCccccchHHHHHH
Q psy3407 155 VN--STREVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAITLHYLRYLKV 231 (749)
Q Consensus 155 V~--ArKeVILAAGAIeTPrLLL~SGIGpas~L~~~GIpvVaDLP-VGRNLqDHp~v~~v~~~~~e~~~~~~~~~~l~~~ 231 (749)
++ |+|+||||||+++||+||++|||||+++|+++||++++|+| ||+|||||+... +.+.++++.......
T Consensus 245 ~~v~a~k~VILaaGa~~sp~lL~~SGig~~~~l~~~gi~~~~dlP~VG~NL~DH~~~~-~~~~~~~~~~~~~~~------ 317 (536)
T 1ju2_A 245 AFVRSKGEVIVSAGTIGTPQLLLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNPRNF-INILPPNPIEPTIVT------ 317 (536)
T ss_dssp EEEEEEEEEEECCHHHHHHHHHHHTTEECHHHHHHTTCCCSEECTTTTEEEECCEEEE-EEECCSSCCCCCCCC------
T ss_pred EEeccCCEEEEcCcccCCHHHHHHcCCCCHHHHHhcCCceEecCcccccchhcCccee-EEEEeCCCcccccch------
Confidence 64 66999999999999999999999999999999999999999 999999999876 666555443210000
Q ss_pred hhccCccccccceEEEEEecCCCCCCCceeeeeccccCCccccccccccccc-eeeeeeeccCCCCeEEe-cCCCCCCCc
Q psy3407 232 AALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGKSVMGS-LFGQEVLVDDNDKDVIA-SPTNLTAKV 309 (749)
Q Consensus 232 ~~r~G~ts~~~~e~~~f~~s~~~~~~Pdiq~~f~p~~~g~d~~~~~~~~~g~-~i~i~l~lP~srGrVtL-~skDp~G~P 309 (749)
..+..........+++.. ..+ ++.+.+. ... ... ...+ .+...+.+|.+||+|+| +++||++.|
T Consensus 318 --~~~~~~~~~~~~~g~~~~----~~~--~~~~~~~----~~~-~~~-~~~~~~~~~~l~~P~SrG~V~L~~s~Dp~~~P 383 (536)
T 1ju2_A 318 --VLGISNDFYQCSFSSLPF----TTP--PFGFFPS----SSY-PLP-NSTFAHFASKVAGPLSYGSLTLKSSSNVRVSP 383 (536)
T ss_dssp --EEEECSSEEEEEEEECCC----SSC--CBTTBSS----SCC-CCC-SSCEEEEEEEESSCSCCEEEECSCSSCTTSCC
T ss_pred --hhhHHHHHHHcCCCCCCC----Chh--hheeecC----ccc-CCC-CcceEEEeeecCCCCcceEEEeCCCCCcccCc
Confidence 000000000000011110 011 1111110 000 010 0111 12334578999999999 899999999
Q ss_pred eEEEeecCCCCCcccHHHHHHHHHHHHHHHHHHHH-hcCCCCcccc---cC---------C--CCCCccc------CCCC
Q psy3407 310 QTIFESFTKMSETNININKKQFMSNMDKVFETIKT-KFEPFAEGEI---PI---------E--SRSSYWN------NNSD 368 (749)
Q Consensus 310 vI~i~Y~s~~~~p~~~~D~a~L~egir~arrIL~A-Aga~~~~~ei---s~---------~--s~~~~~~------~~~~ 368 (749)
.|+++|+.+ | +|++.++++++.+++|+++ ++..+...+. +. . ...+.|. ....
T Consensus 384 ~i~~~y~~~---~---~D~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~p~~~~~~~~~p~~~~~d~~~~~~ir~~~~t~ 457 (536)
T 1ju2_A 384 NVKFNYYSN---L---TDLSHCVSGMKKIGELLSTDALKPYKVEDLPGVEGFNILGIPLPKDQTDDAAFETFCRESVASY 457 (536)
T ss_dssp EECCCTTCS---H---HHHHHHHHHHHHHHHHHTSGGGGGGCSSCCSTTCSCCBSSSCCCSCTTCHHHHHHHHHHHCEEC
T ss_pred eecccccCC---c---cHHHHHHHHHHHHHHHHcCccchhhhccccccCCCccccccCCCcccCCHHHHHHHHHhccCcc
Confidence 999999999 7 9999999999999999997 3444333221 00 0 0001110 0011
Q ss_pred CCccccccCCCCCCCCCCCCCCccCCCCCccCCCCcc
Q psy3407 369 GTSKEACEMGKLGSSTPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 369 Gt~mGTcRMG~D~~~~p~PktSVVD~~grsHD~~NL~ 405 (749)
.|.+|||||| +|||++||.|+++||+
T Consensus 458 ~H~~GTcrMG-----------~VVD~~lrV~Gv~nLr 483 (536)
T 1ju2_A 458 WHYHGGCLVG-----------KVLDGDFRVTGINALR 483 (536)
T ss_dssp SCCEESSCBT-----------TTBCTTSBBTTCBTEE
T ss_pred ccCcCccCCc-----------cEECCCCeEcCCCCeE
Confidence 3499999999 3999999999999998
No 9
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism, oxidoreductase, atomic RESO; HET: FAD; 0.92A {Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A* 1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A* 1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Probab=100.00 E-value=5.1e-41 Score=374.56 Aligned_cols=329 Identities=11% Similarity=0.053 Sum_probs=230.1
Q ss_pred CEEEcCChhhhHHHHHcCCCCCCccchH-HHHHHhhcCCCCCCCCCCCCCCCCCcccCCCCCCChHHHHHHHHHHHcCC-
Q psy3407 1 MLYQRGNDRDYNDWERAGNPGWGFKHIL-PYFLKSEDFQDISRQDAAFHNTGGYLTVSPRLSPDETVKIIEAAGKELKI- 78 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~lG~~GWSYddLe-PYY~KaE~~~~gvsg~~~~hG~~GPl~V~~P~~~~p~~~~f~~A~~eLG~- 78 (749)
|+|+|+++.|||.|+ ++|+|++|+ |||+|+|++ +++++. .+..+ +.++ ..+..+.|.++++++|+
T Consensus 116 ~~~~R~~~~Dfd~w~----~~w~~~~l~~pyy~~~E~~-~~~~~~------~~~~~-~~~~-~~p~~~~~~~a~~~~G~~ 182 (504)
T 1n4w_A 116 GMAVEPKRSYFEEIL----PRVDSSEMYDRYFPRANSM-LRVNHI------DTKWF-EDTE-WYKFARVSREQAGKAGLG 182 (504)
T ss_dssp CBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHH-HTCBCC------CHHHH-HHCG-GGHHHHHHHHHHHHTTCC
T ss_pred eEEEeCCHHHHHHhc----cccchhhhhhHHHHHHHHH-hCCCCC------Ccccc-cCCC-cchHHHHHHHHHHHcCCC
Confidence 789999999999996 689999999 999999998 654321 00000 0000 25688999999999999
Q ss_pred ----CCCCCCCCC---------CCccccccccccCCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCC-CCcEEEEE
Q psy3407 79 ----GTMYDINRD---------QYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDS-KLKAYGVE 144 (749)
Q Consensus 79 ----~~~~D~N~g---------~~~G~~~c~~~c~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~-ggrAtGV~ 144 (749)
+...|+|+. ....++.|..+|++| |+++..+||.++.+++|++|++++.|+||++++ +++++||+
T Consensus 183 ~~~~p~~~d~n~~~~~g~g~~~~~~~~G~c~~g~~~g-r~s~~~~~l~~a~~~~n~~i~~~~~V~~i~~~~~g~~~~gV~ 261 (504)
T 1n4w_A 183 TVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHG-KQSLDKTYLAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVE 261 (504)
T ss_dssp EEECCBSBCHHHHHHHHTTSSCCSGGGTCSTTCCSSS-BCCTTTTHHHHHHHTTSEEEEESEEEEEEEECTTSSEEEEEE
T ss_pred CccCCcccccCccccccCccccCCcccccccccCCCC-ccCHHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEEE
Confidence 554455421 134567788899999 999999999998889999999999999999985 35899999
Q ss_pred EEecCC---eEEEEEeccEEEEccCCCCChHHHhhcC-CCccccccccCcceeecCCCCCCcccccccceEEEEeCCCCc
Q psy3407 145 YINSQG---KICHVNSTREVILSAGAVGSPQLLMLSG-IGIQKHLKEKNITVIKDLPVGENLQDHVCFPGVLFSSNKDPA 220 (749)
Q Consensus 145 y~d~~G---~~~~V~ArKeVILAAGAIeTPrLLL~SG-IGpas~L~~~GIpvVaDLPVGRNLqDHp~v~~v~~~~~e~~~ 220 (749)
+.+.+| +.++++| ++||||||+++||+|||+|| || |||++.+ .||+|||||+... +.+... +..
T Consensus 262 ~~~~~g~~~~~~~v~A-~~VIlaaG~~~s~~lL~~Sg~ig--------~i~~~~~-~VG~nl~dh~~~~-~~~~~~-~~~ 329 (504)
T 1n4w_A 262 QKDTDGKLLATKEISC-RYLFLGAGSLGSTELLVRARDTG--------TLPNLNS-EVGAGWGPNGNIM-TARANH-MWN 329 (504)
T ss_dssp EECTTCCEEEEEEEEE-EEEEECSHHHHHHHHHHHHHHTT--------SSTTCCT-TTTCCBBCTTCEE-EEEECC-TTC
T ss_pred EeCCCCccceeEEEee-CEEEEccCCCCCHHHHHhccccC--------CCCCCCh-hhccccccCCcce-eeeccC-CCC
Confidence 986567 6788999 69999999999999999999 88 6876643 2999999999765 443321 110
Q ss_pred cccchHHHHHHhhccC-ccccccceEEEEEecCCCCCCCceeeeeccccCCccccccccccccceeeeeeeccCCCCeEE
Q psy3407 221 ITLHYLRYLKVAALKG-ISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGKSVMGSLFGQEVLVDDNDKDVI 299 (749)
Q Consensus 221 ~~~~~~~l~~~~~r~G-~ts~~~~e~~~f~~s~~~~~~Pdiq~~f~p~~~g~d~~~~~~~~~g~~i~i~l~lP~srGrVt 299 (749)
. .| +. +.....+|..... ...|++++.+. .+ .. +. ..+.+...+.+|.++|+|+
T Consensus 330 ~-------------~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~~-~~--~~----~~--~~~~~~~~~~~p~srG~V~ 384 (504)
T 1n4w_A 330 P-------------TGAHQ--SSIPALGIDAWDN-SDSSVFAEIAP-MP--AG----LE--TWVSLYLAITKNPQRGTFV 384 (504)
T ss_dssp C-------------CCSCC--CSSCCEEEEECCS-STTCEEEEEEC-CC--CS----SC--CCEEEEEEEECCCCCBCEE
T ss_pred c-------------ccCcC--CCccEEEEeccCC-CCCceEEEecc-CC--hH----HH--hhhhhheeeeccCCCcEEE
Confidence 0 11 11 1112234444432 24466554331 11 00 11 2344455667899999999
Q ss_pred ecCCCCCCCceEEEeecCCCCCcccHHHHHHHHHHHH-HHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCccccccCC
Q psy3407 300 ASPTNLTAKVQTIFESFTKMSETNININKKQFMSNMD-KVFETIKTKFEPFAEGEIPIESRSSYWNNNSDGTSKEACEMG 378 (749)
Q Consensus 300 L~skDp~G~PvI~i~Y~s~~~~p~~~~D~a~L~egir-~arrIL~AAga~~~~~eis~~s~~~~~~~~~~Gt~mGTcRMG 378 (749)
|+++|+ .++++|+.+ + | +.+.++++ .+++|+++++. ....+..... ...+......|.+||||||
T Consensus 385 L~s~~~----~i~~~~~~~---~----D-~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~-~~~~~~~~~~H~~GTcrMG 450 (504)
T 1n4w_A 385 YDAATD----RAKLNWTRD---Q----N-APAVNAAKALFDRINKANGT-IYRYDLFGTQ-LKAFADDFCYHPLGGCVLG 450 (504)
T ss_dssp EETTTT----EEEECCCGG---G----G-HHHHHHHHHHHHHHHHHHTC-CBCCSSSSSS-CCSEECSEESSCBCSSCTT
T ss_pred ecCCCC----ceEeccCCC---c----C-HHHHHHHHHHHHHHHhccCC-CcCCchhhhh-hhhhccCccccccCCceee
Confidence 998775 689999877 3 6 56777888 99999988543 1111000000 0001111113499999999
Q ss_pred CCCCCCCCCCCCccCCCCCccCCCCcc
Q psy3407 379 KLGSSTPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 379 ~D~~~~p~PktSVVD~~grsHD~~NL~ 405 (749)
||||++||.|+++|||
T Consensus 451 -----------~VVD~~~rV~Gv~nLr 466 (504)
T 1n4w_A 451 -----------KATDDYGRVAGYKNLY 466 (504)
T ss_dssp -----------TTBCTTSBBTTCSSEE
T ss_pred -----------eEECCCCeEeccCCeE
Confidence 5999999999999998
No 10
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD; 1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1 PDB: 3cox_A*
Probab=100.00 E-value=1.2e-39 Score=364.07 Aligned_cols=326 Identities=12% Similarity=0.057 Sum_probs=224.0
Q ss_pred CEEEcCChhhhHHHHHcCCCCCCccchH-HHHHHhhcCCCCCCCCCCCCCCCCCcccCCCCC-CChHHHHHHHHHHHcCC
Q psy3407 1 MLYQRGNDRDYNDWERAGNPGWGFKHIL-PYFLKSEDFQDISRQDAAFHNTGGYLTVSPRLS-PDETVKIIEAAGKELKI 78 (749)
Q Consensus 1 Miy~RGsp~DFD~Wa~lG~~GWSYddLe-PYY~KaE~~~~gvsg~~~~hG~~GPl~V~~P~~-~~p~~~~f~~A~~eLG~ 78 (749)
|+|+|+++.|||.|+ ++|+|++|+ |||+|+|++ +++++. +... ++.. ..++.+.|.++++++|+
T Consensus 121 ~~~~R~~~~dfd~w~----~~w~~~~l~~pyy~~~E~~-~~~~~~--------~~~~-~~~~~~~~~~~~~~~a~~~~G~ 186 (507)
T 1coy_A 121 GMAVTPKRNYFEEIL----PSVDSNEMYNKYFPRANTG-LGVNNI--------DQAW-FESTEWYKFARTGRKTAQRSGF 186 (507)
T ss_dssp CBCCCCCHHHHHHHC----TTSCHHHHHHTHHHHHHHH-HTCBCC--------CHHH-HHHCGGGHHHHHHHHHHHHTTC
T ss_pred eEEeeCCHHHHHhhC----CccchhcchhHHHHHHHHH-hCCCCC--------CCcc-ccccccchHHHHHHHHHHHcCC
Confidence 789999999999996 589999999 999999998 654311 1100 0111 35788999999999999
Q ss_pred -----CCCCCCCCC---------CCccccccccccCCCcccchhhhhhhhhccCCCeEEEcccEEEEEEeCCCC-cEEEE
Q psy3407 79 -----GTMYDINRD---------QYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSKL-KAYGV 143 (749)
Q Consensus 79 -----~~~~D~N~g---------~~~G~~~c~~~c~~GaR~Saa~ayL~pa~~r~NLtIlT~a~V~RIl~d~gg-rAtGV 143 (749)
+...|+|++ ....++.|..+|++| |+|+..+||.++++++|++|++++.|+||++++++ +|+||
T Consensus 187 ~~~~~p~~~d~n~~~~~g~~~~~~~~~~g~C~~gc~~g-R~s~~~~~l~~a~~~~n~~i~~~~~v~~i~~~~~g~~~~gV 265 (507)
T 1coy_A 187 TTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAG-KKSLDKTYLAQAAATGKLTITTLHRVTKVAPATGSGYSVTM 265 (507)
T ss_dssp CEEECCBSBCHHHHHHHHTTCSCCSTTTTCSTTCCSSS-BCCTTTTHHHHHHHTTCEEEECSEEEEEEEECSSSSEEEEE
T ss_pred CCccCCcccccCcccccCCCcccCccccccccccCCCC-CcChHHHHHHHHHhcCCcEEEeCCEEEEEEECCCCCEEEEE
Confidence 555455431 124567788899999 99999999999888999999999999999998534 89999
Q ss_pred EEEecCC---eEEEEEeccEEEEccCCCCChHHHhhcC-CCccccccccCcceeecCC--CCCCcccccccceEEEEeCC
Q psy3407 144 EYINSQG---KICHVNSTREVILSAGAVGSPQLLMLSG-IGIQKHLKEKNITVIKDLP--VGENLQDHVCFPGVLFSSNK 217 (749)
Q Consensus 144 ~y~d~~G---~~~~V~ArKeVILAAGAIeTPrLLL~SG-IGpas~L~~~GIpvVaDLP--VGRNLqDHp~v~~v~~~~~e 217 (749)
++.+.+| +.++++| ++||||||+++||+|||+|| || +|| |++ ||+||+||+... .......
T Consensus 266 ~~~~~~g~~~~~~~~~A-~~VIlaaGa~~sp~lL~~Sg~iG--------~lp---nl~d~VG~~l~~h~~~~-~~~~~~~ 332 (507)
T 1coy_A 266 EQIDEQGNVVATKVVTA-DRVFFAAGSVGTSKLLVSMKAQG--------HLP---NLSSQVGEGWGNNGNIM-VGRANHM 332 (507)
T ss_dssp EEECTTSCEEEEEEEEE-EEEEECSHHHHHHHHHHHHHHTT--------SST---TSCTTTTCCBBCTTEEE-EEEECCT
T ss_pred EEeCCCCcccccEEEEe-CEEEEccCccCCHHHHHhcccCC--------CCC---ccChhhCCccccCCccc-ccccccc
Confidence 9986556 4788999 69999999999999999999 98 244 444 999999998643 2221110
Q ss_pred CCccccchHHHHHHhhccC-ccccccceEEEEEecCCCCCCCceeeeeccccCCccccccccccccceeeeeeeccCCCC
Q psy3407 218 DPAITLHYLRYLKVAALKG-ISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGKSVMGSLFGQEVLVDDNDK 296 (749)
Q Consensus 218 ~~~~~~~~~~l~~~~~r~G-~ts~~~~e~~~f~~s~~~~~~Pdiq~~f~p~~~g~d~~~~~~~~~g~~i~i~l~lP~srG 296 (749)
. ...| +... ... .++..... ...|++++.+ + +... +. ..+.....+..|.++|
T Consensus 333 ~--------------~~~~~~~~~-~~~-~~~~~~~~-~~~~~~~~~~-~--~~~~----~~--~~~~~~~~~~~p~s~G 386 (507)
T 1coy_A 333 W--------------DATGSKQAT-IPT-MGIDNWAD-PTAPIFAEIA-P--LPAG----LE--TYVSLYLAITKNPERA 386 (507)
T ss_dssp T--------------SCCCSCCCS-SCC-EEEECTTC-TTSCEEEEEE-C--CCCS----SC--CCEEEEEEEECCCCCB
T ss_pred c--------------ccccccCCC-cce-EEEeccCC-CCCCcEEEec-c--CCHH----Hh--hheeeeEEEeeeCCCc
Confidence 0 0112 1110 011 11212221 2356655433 1 1110 11 2233344568899999
Q ss_pred eEEecCCCCCCCceEEEeecCCCCCcccHHHHHHHHHHHH-HHHHHHHHhcCCCCcccccCCCCCCcccCCCCCCccccc
Q psy3407 297 DVIASPTNLTAKVQTIFESFTKMSETNININKKQFMSNMD-KVFETIKTKFEPFAEGEIPIESRSSYWNNNSDGTSKEAC 375 (749)
Q Consensus 297 rVtL~skDp~G~PvI~i~Y~s~~~~p~~~~D~a~L~egir-~arrIL~AAga~~~~~eis~~s~~~~~~~~~~Gt~mGTc 375 (749)
+|+|+++|+ .++++|+.+ + |. .+.++++ .+++|+++++. +...+.. .+....|......|.+|||
T Consensus 387 ~V~L~s~~~----~i~~~~~~~---~----D~-~~~~~~~~~~~~i~~~~~~-~~~~~~~-~~d~~~~~~~~~~H~~GTc 452 (507)
T 1coy_A 387 RFQFNSGTG----KVDLTWAQS---Q----NQ-KGIDMAKKVFDKINQKEGT-IYRTDLF-GVYYKTWGDDFTYHPLGGV 452 (507)
T ss_dssp CEEEETTTT----EEEECCCGG---G----GH-HHHHHHHHHHHHHHHHHTC-CBCSSCC---CCCSSBCSEESCCBCSS
T ss_pred EEEEccCCC----ceeeccCCC---C----cH-HHHHHHHHHHHHHHhhcCC-cccCccc-ccchhhhcccccccccCCc
Confidence 999988766 889999888 4 54 4666666 99999998653 2111110 0100112111123599999
Q ss_pred cCCCCCCCCCCCCCCccCCCCCccCCCCcc
Q psy3407 376 EMGKLGSSTPIKKHSVITSNNNSLNLENIL 405 (749)
Q Consensus 376 RMG~D~~~~p~PktSVVD~~grsHD~~NL~ 405 (749)
|||. |||++||+|+++|||
T Consensus 453 rMG~-----------VVD~~~rV~Gv~nLr 471 (507)
T 1coy_A 453 LLNK-----------ATDNFGRLPEYPGLY 471 (507)
T ss_dssp CTTT-----------TSCTTSBCTTSTTEE
T ss_pred chhh-----------eECCCCeEeccCCeE
Confidence 9993 999999999999998
No 11
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer, GMC oxidoredu PHBH fold, rossmann domain, oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A* 2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A* 3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A* 3fdy_A* ...
Probab=100.00 E-value=8.3e-33 Score=317.19 Aligned_cols=279 Identities=11% Similarity=0.037 Sum_probs=192.5
Q ss_pred CCcccchhhhhhhhh------ccCCCeEEEcccEEEEEEeCC-CCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCChH
Q psy3407 101 YGLRCSTSKAFLEPA------KFRENLIILKNTEVIKILIDS-KLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 101 ~GaR~Saa~ayL~pa------~~r~NLtIlT~a~V~RIl~d~-ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
...|+++..++|.+. ++++|++|++++.|++|++++ +++++||++.+ .+|+.++++| ++||||+|++.||+
T Consensus 249 ~~~r~s~~~~~l~~~~~l~~~~~~~nv~v~~~~~V~~i~~~~~~~~v~GV~~~~~~~g~~~~i~A-~~VIlaaG~~~s~~ 327 (623)
T 3pl8_A 249 TFVEWSSANTVFDLQNRPNTDAPEERFNLFPAVACERVVRNALNSEIESLHIHDLISGDRFEIKA-DVYVLTAGAVHNTQ 327 (623)
T ss_dssp TEEEECCHHHHCCCCCEEETTEEEEEEEEECSEEEEEEEECTTSSCEEEEEEEETTTCCEEEECE-EEEEECSCTTHHHH
T ss_pred CccccchHHhhhhhhhcchhhccCCCEEEEeCCEEEEEEEECCCCEEEEEEEEEcCCCcEEEEEC-CEEEEcCCCcCCHH
Confidence 345888889999887 677899999999999999984 45999999997 4788889999 79999999999999
Q ss_pred HHhhcCCCccccccccCcceeecCC-CCCCcccccccceEEEEeCCCCcc---------c------c------------c
Q psy3407 173 LLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAI---------T------L------------H 224 (749)
Q Consensus 173 LLL~SGIGpas~L~~~GIpvVaDLP-VGRNLqDHp~v~~v~~~~~e~~~~---------~------~------------~ 224 (749)
||++|||||+.+++.+||++ |+| ||+|||||+... +.+.++++... + + +
T Consensus 328 lL~~sgiG~~~~l~~~~i~~--~l~~vG~nl~dh~~~~-~~~~~~~~~~~~~~~~~~~~g~~g~~~~~~~~~~~~p~~~~ 404 (623)
T 3pl8_A 328 LLVNSGFGQLGRPNPANPPE--LLPSLGSYITEQSLVF-CQTVMSTELIDSVKSDMTIRGTPGELTYSVTYTPGASTNKH 404 (623)
T ss_dssp HHHTTTSSCCSSCCTTSCCS--SCTTTTBSCBCCCEEE-EEEEECHHHHHHHTTTCEEESCTTSTTCEEECCTTCTTCSS
T ss_pred HHHhcCCCccccccccCCCC--CCcccccchhhCcCce-EEEEECCcccccccccccccccCCCcceecccccCcccccC
Confidence 99999999999999999999 999 999999999887 77777643100 0 0 0
Q ss_pred hHHHHH-----Hhhc-cC-ccc-cccceEEEEEecCCCCCCC-ceeee---eccccCCccccccccccccceeeeeeecc
Q psy3407 225 YLRYLK-----VAAL-KG-IST-VEVAKVVGFINTKRNSLYP-NVELL---SIRIPMNSKERNNGKSVMGSLFGQEVLVD 292 (749)
Q Consensus 225 ~~~l~~-----~~~r-~G-~ts-~~~~e~~~f~~s~~~~~~P-diq~~---f~p~~~g~d~~~~~~~~~g~~i~i~l~lP 292 (749)
.+.+.. +... .+ +.. ....+...+.... ...| ..|++ +..+.++.++.... ...+. ...+.+|
T Consensus 405 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~-~~~e~~p 479 (623)
T 3pl8_A 405 PDWWNEKVKNHMMQHQEDPLPIPFEDPEPQVTTLFQ--PSHPWHTQIHRDAFSYGAVQQSIDSRL--IVDWR-FFGRTEP 479 (623)
T ss_dssp CHHHHHHHHHHHHHCTTCCCSSCTTCCCCEEECCCB--TTBCEEEEEECCSCCCSCCCCSSCGGG--EEEEE-EEECCCC
T ss_pred Cchhhhhhhhhhhccccccccccccccccccccccc--ccCcchhhhhhhhccccccccccccce--EEEEE-EEEeecc
Confidence 000100 0000 11 000 0000000011000 1112 01111 11122333322211 11122 3467999
Q ss_pred CCCCeEEecC--CCCCCCceEEEeecCCCCCcccHH-HHHHHHHHHHHHHHHHHHhcCCCCcccccCCCCCCcccCCCCC
Q psy3407 293 DNDKDVIASP--TNLTAKVQTIFESFTKMSETNINI-NKKQFMSNMDKVFETIKTKFEPFAEGEIPIESRSSYWNNNSDG 369 (749)
Q Consensus 293 ~srGrVtL~s--kDp~G~PvI~i~Y~s~~~~p~~~~-D~a~L~egir~arrIL~AAga~~~~~eis~~s~~~~~~~~~~G 369 (749)
+++|||+|++ +|++|+|+++++|..+ | + |+++++++++.++++++++++.....+.... ......
T Consensus 480 ~~~n~v~L~~~~~D~~g~P~~~~~~~~~---~---~~d~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------~~~~~~ 547 (623)
T 3pl8_A 480 KEENKLWFSDKITDAYNMPQPTFDFRFP---A---GRTSKEAEDMMTDMCVMSAKIGGFLPGSLPQFM------EPGLVL 547 (623)
T ss_dssp CTTCEEEEEEEEECTTSSEEEEEECCCC---T---THHHHHHHHHHHHHHHHHTTTEEECTTSCSEEC------CTTTTC
T ss_pred CCCCEEEECCCCcCCCCCceEEEEEeCC---c---HHHHHHHHHHHHHHHHHHHhcCCcccCchhhcc------CCCCcc
Confidence 9999999976 9999999999999999 7 8 9999999999999999987542211110000 111113
Q ss_pred CccccccCCCCCCCCCCCCCCcc-CCCCCccCCCCcc
Q psy3407 370 TSKEACEMGKLGSSTPIKKHSVI-TSNNNSLNLENIL 405 (749)
Q Consensus 370 t~mGTcRMG~D~~~~p~PktSVV-D~~grsHD~~NL~ 405 (749)
|.+||||||+|+ |++||| |++||+|+++|||
T Consensus 548 H~~gt~~mg~~~-----~~~~vvvd~~~~~~~~~~l~ 579 (623)
T 3pl8_A 548 HLGGTHRMGFDE-----KEDNCCVNTDSRVFGFKNLF 579 (623)
T ss_dssp CCBCTTCBCSST-----TTTTCSBCTTCBBTTCSSEE
T ss_pred cCCCceeCCCCC-----CCCeeEECCCCCEecCCCeE
Confidence 499999999984 799998 9999999999998
No 12
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=96.93 E-value=0.0018 Score=72.05 Aligned_cols=65 Identities=17% Similarity=0.208 Sum_probs=52.4
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCC-ChHHHhh
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVG-SPQLLML 176 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIe-TPrLLL~ 176 (749)
.|...+++.|++|++++.|++|+.+++++++||.+.+ +|+..+++|+|.||||+|++. +|.+|..
T Consensus 207 ~L~~~~~~~Gv~i~~~t~v~~L~~~~~g~v~GV~~~~-~g~~~~i~A~k~VVlAtGG~~~n~~m~~~ 272 (510)
T 4at0_A 207 PLVETAEKLGVRAEYDMRVQTLVTDDTGRVVGIVAKQ-YGKEVAVRARRGVVLATGSFAYNDKMIEA 272 (510)
T ss_dssp HHHHHHHHTTCEEECSEEEEEEEECTTCCEEEEEEEE-TTEEEEEEEEEEEEECCCCCTTCHHHHHH
T ss_pred HHHHHHHHcCCEEEecCEeEEEEECCCCcEEEEEEEE-CCcEEEEEeCCeEEEeCCChhhCHHHHHH
Confidence 3434344568999999999999998568999999987 787888999669999999998 6665543
No 13
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA, SKIP, complex, virulence, cytoplasm, membrane, polymorphism, signaling protein; 2.60A {Homo sapiens} PDB: 3hw2_B
Probab=95.69 E-value=0.019 Score=51.41 Aligned_cols=86 Identities=24% Similarity=0.416 Sum_probs=60.6
Q ss_pred cCceeEEec----CCCCCCcceeeeccceEEeecCCCCCCceeeEEeccc-----hhhhcCCCceeEEEecccceEEEEe
Q psy3407 552 SGNLMYKIN----DKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSF-----SQVYDKSRPYTFKVNFNPYSFVLFA 622 (749)
Q Consensus 552 ~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (749)
.|-|+.|-. ....|.+-|+-|.++.|..-..+...+....|.-... ...-+..||+.|++.+.+-...+|+
T Consensus 3 eG~L~kK~g~~~~~~k~Wk~rwfvL~~~~L~~yk~~~~~~p~~~i~l~~~~~~~~~~~~~~~r~~~F~l~~~~~~~y~f~ 82 (112)
T 3cxb_B 3 EGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRANTTDRPHAFQVILSDRPCLELS 82 (112)
T ss_dssp EEEEEECCSCCCSSCCCCEEEEEEEETTEEEEESSSSCCSCSEEEETTC-CEEEEEECCCSSCTTEEEEEETTSCCEEEE
T ss_pred eEEEEEeCCCCCCCCCCceEEEEEEECCEEEEECCCCCCCccceEEecCCEEEeeeccCCCCCCeEEEEEcCCCCEEEEE
Confidence 355555543 3568999999999999987665544443444432222 2234678999999998777677899
Q ss_pred cCChhhhhHHHHhee
Q psy3407 623 APDESQLFDWLQDIM 637 (749)
Q Consensus 623 ~~~~~~~~~~~~~~~ 637 (749)
|+++.++-+|++.|-
T Consensus 83 A~s~ee~~~Wi~ai~ 97 (112)
T 3cxb_B 83 AESEAEMAEWMQHLC 97 (112)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999999998763
No 14
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=94.84 E-value=0.055 Score=60.94 Aligned_cols=63 Identities=22% Similarity=0.235 Sum_probs=49.8
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC-hHHH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS-PQLL 174 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT-PrLL 174 (749)
.|....++.|++|++++.|++|+.+++++++||.+.+.+|+..+++| +.||||+|.... +.++
T Consensus 260 ~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a-~~VVlAtGg~~~n~~~~ 323 (571)
T 1y0p_A 260 VLYDNAVKRNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKA-DAVILATGGFAKNNERV 323 (571)
T ss_dssp HHHHHHHHTTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEEC-SEEEECCCCCTTCHHHH
T ss_pred HHHHHHHhcCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEEC-CeEEEeCCCcccCHHHH
Confidence 34344445689999999999999874489999999876788788999 789999999865 4433
No 15
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=94.81 E-value=0.051 Score=61.23 Aligned_cols=61 Identities=16% Similarity=0.277 Sum_probs=49.3
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
.|....++.|++|++++.|++|+.+++++++||++.+.+|+..+++| +.||||+|+...-+
T Consensus 255 ~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A-~~VVlAtGg~s~~~ 315 (566)
T 1qo8_A 255 TLRKAAKEQGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGA-KSVVLATGGYGMNK 315 (566)
T ss_dssp HHHHHHHHTTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEE-EEEEECCCCCTTCH
T ss_pred HHHHHHHhcCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEc-CEEEEecCCcccCH
Confidence 33333445689999999999999884379999999876788788999 99999999987643
No 16
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo sapiens} PDB: 3via_A 2dhi_A
Probab=94.74 E-value=0.07 Score=46.63 Aligned_cols=92 Identities=13% Similarity=0.205 Sum_probs=62.5
Q ss_pred ccccccccCceeEEecCCCCCCcceeee-ccceEEeecCCCCCCceeeEEeccch-------hh------hcCCCceeEE
Q psy3407 545 GHDQVFRSGNLMYKINDKSAWTPGFVNL-QNGILTVKEAPNSPKNISVIQCHSFS-------QV------YDKSRPYTFK 610 (749)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~~~~~~~~~ 610 (749)
|...+..+|-|+-+=.....|..-|.-| +++.|..-..+...+-...|.-.... .| -.+.+|+.|.
T Consensus 1 G~~~~~~~G~L~K~g~~~k~WkkR~fvL~~~~~L~yyk~~~~~~~~g~i~l~~~~i~l~~~~~v~~v~~~~~~~~~~~F~ 80 (112)
T 3aj4_A 1 GSMAFVKSGWLLRQSTILKRWKKNWFDLWSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQECRDTQPPDGKSKDCMLQ 80 (112)
T ss_dssp CCCSCSEEEEEEEECSSSCCEEEEEEEECTTSEEEEESSTTCCSEEEEEEHHHHEEEEEEGGGCCSCCCSTTCCGGGEEE
T ss_pred CCcceeEEEEEEeeCCCCCCeeceEEEEeeCCEEEEEcCCCCCCCCccccccccceeecccccccccCCCCCCCcCcEEE
Confidence 3445667777766545566899999999 89999887777665544443322211 21 2356699999
Q ss_pred EecccceEEEEecCChhhhhHHHHhe
Q psy3407 611 VNFNPYSFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (749)
+....-.-..|.|.++.++-+|++.|
T Consensus 81 i~~~~~r~~~l~a~s~~e~~~Wi~al 106 (112)
T 3aj4_A 81 IVCRDGKTISLCAESTDDCLAWKFTL 106 (112)
T ss_dssp EEETTSCEEEEECSSHHHHHHHHHHH
T ss_pred EEecCCcEEEEEeCCHHHHHHHHHHH
Confidence 97654555668889999999998865
No 17
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=94.73 E-value=0.054 Score=61.30 Aligned_cols=65 Identities=20% Similarity=0.208 Sum_probs=50.3
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCC-ChHHHhh
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVG-SPQLLML 176 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIe-TPrLLL~ 176 (749)
.|....++.|++|++++.|++|+.+++++++||.+.+.+|+..+++| +.||||+|... .+.+|..
T Consensus 260 ~L~~~~~~~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A-~~VVlAtGg~~~~~~~~~~ 325 (572)
T 1d4d_A 260 VLWDNAVKRGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKA-DAVVIAAGGFAKNNERVSK 325 (572)
T ss_dssp HHHHHHHHTTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEEC-SEEEECCCCCTTCHHHHHH
T ss_pred HHHHHHHHcCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEc-CEEEEeCCCCccCHHHHHH
Confidence 34343445689999999999999873379999999866788788999 99999999887 4555543
No 18
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=94.34 E-value=0.15 Score=45.05 Aligned_cols=100 Identities=20% Similarity=0.267 Sum_probs=69.9
Q ss_pred hccccccccccccccCceeEEe-cCCCCCCcceeeeccceEEeecCCCCCCceeeEEeccch--hh---hcCCCceeEEE
Q psy3407 538 FSDISRTGHDQVFRSGNLMYKI-NDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFS--QV---YDKSRPYTFKV 611 (749)
Q Consensus 538 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~ 611 (749)
...+++.....+..+|-|.-+- +....|..-|+-|.++.|..-..++..+-..+|.-.... .+ -...+|+.|.+
T Consensus 11 ~~~~~~~~~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i 90 (122)
T 2yry_A 11 SHSMKRNPNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKA 90 (122)
T ss_dssp CCCCCCCTTCCEEEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTTCCSCCEEEESTTCCCEECCTTCSCSSSSEEEE
T ss_pred cCcccCCCCCCccEEEEEEEECCCCCCCcEEEEEEEeCCEEEEECCCCCCCcccEEEcCCCEEEEcCccccCCcccEEEE
Confidence 3456666667788888776553 356789999999999999987766655555555433322 11 23568899998
Q ss_pred ecccceEEEEecCChhhhhHHHHhee
Q psy3407 612 NFNPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
....-.-.+|.|+++.++-+|+..|.
T Consensus 91 ~~~~~r~~~l~a~s~~e~~~Wi~al~ 116 (122)
T 2yry_A 91 EHAGVRTYFFSAESPEEQEAWIQAMG 116 (122)
T ss_dssp ECSSSCEEEEECSSHHHHHHHHHHHH
T ss_pred ecCCCcEEEEEcCCHHHHHHHHHHHH
Confidence 76655556788888888888887664
No 19
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=93.77 E-value=0.25 Score=43.06 Aligned_cols=97 Identities=21% Similarity=0.285 Sum_probs=65.6
Q ss_pred ccccccccccccCceeEEe-cCCCCCCcceeeeccceEEeecCCCCCCceeeEEeccch--hh---hcCCCceeEEEecc
Q psy3407 541 ISRTGHDQVFRSGNLMYKI-NDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFS--QV---YDKSRPYTFKVNFN 614 (749)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~~~~~~~~~~ 614 (749)
+++.-...+..+|-|.-+- +....|..-|+-|.++.|..-..++..+-..+|.-.... .+ -...+++.|.|...
T Consensus 3 ~~~~p~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~i~~~ 82 (117)
T 2d9y_A 3 SGSSGNAPVTKAGWLFKQASSGVKQWNKRWFVLVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHA 82 (117)
T ss_dssp CCCCSSCCCCEEEEEEEECTTSSSCEEEEEEEEETTEEEEESSTTCCSCCEEEECSSCEEEECCTTTTCCCSSEEEEECS
T ss_pred CCCCCCCCeeEEEEEEEeCCCCCCCceEEEEEECCCEEEEECCCCCCCcCCEEEeCCeEEEEcCccccCCCccEEEEEcC
Confidence 3455556778888876554 356789999999999999887666554444444322211 11 23568899998766
Q ss_pred cceEEEEecCChhhhhHHHHhee
Q psy3407 615 PYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
+-.-..|.|.++.++-+|++.|.
T Consensus 83 ~~r~~~l~a~s~~e~~~Wi~al~ 105 (117)
T 2d9y_A 83 GVRTYFFSAESPEEQEAWIQAMG 105 (117)
T ss_dssp SSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCHHHHHHHHHHHH
Confidence 65556677888888888887764
No 20
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=93.73 E-value=0.093 Score=59.86 Aligned_cols=53 Identities=13% Similarity=0.329 Sum_probs=45.0
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeT 170 (749)
.+.|++|+.++.|++|+.+++++++||.+.+ .+|+...++| +.||||+|+...
T Consensus 154 ~~~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A-~~VVlAtGg~~~ 207 (588)
T 2wdq_A 154 LKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKA-RATVLATGGAGR 207 (588)
T ss_dssp HHTTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEE-EEEEECCCCCGG
T ss_pred HhCCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEc-CEEEECCCCCcc
Confidence 4568999999999999986457999999986 4787788999 899999998754
No 21
>2dkp_A Pleckstrin homology domain-containing family A member 5; PH domain, pleckstrin homology domain-containing protein family A member 5; NMR {Homo sapiens}
Probab=93.51 E-value=0.15 Score=45.43 Aligned_cols=100 Identities=18% Similarity=0.249 Sum_probs=66.3
Q ss_pred hhccccccccccccccCceeEEec-CCCCCCcceeeeccceEEeecCCCCCCceeeEEeccch-----hhhcCCCceeEE
Q psy3407 537 QFSDISRTGHDQVFRSGNLMYKIN-DKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFS-----QVYDKSRPYTFK 610 (749)
Q Consensus 537 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 610 (749)
....+.+.....+.++|-|+-+=. -...|..-|+-|.++.|..-..++..+-..+|.-.... ..-...++|.|.
T Consensus 9 ~s~~~~~~~~~~~~~~G~L~K~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~F~ 88 (128)
T 2dkp_A 9 RSNSIKRNPNAPVVRRGWLYKQDSTGMKLWKKRWFVLSDLCLFYYRDEKEEGILGSILLPSFQIALLTSEDHINRKYAFK 88 (128)
T ss_dssp SSCCCCCCTTSCCCEEEEEEEECCSSSCCEEEEEEEEETTEEEEESSTTCCSEEEEECGGGSEEEECCGGGCCSSCSEEE
T ss_pred cchhhhcCCCCCcEEEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCCCcccceEEEcCceEEEEcCCcccCCCCeEEE
Confidence 345666777778889998754433 35689999999999999987777665555555432221 111236788888
Q ss_pred EecccceEEEEecCChhhhhHHHHhe
Q psy3407 611 VNFNPYSFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (749)
+....-.-..|.|.++.++-+|++.|
T Consensus 89 i~~~~~r~~~l~a~s~~e~~~Wi~al 114 (128)
T 2dkp_A 89 AAHPNMRTYYFCTDTGKEMELWMKAM 114 (128)
T ss_dssp EECSSSCCEEEECSSHHHHHHHHHHH
T ss_pred EEcCCCCEEEEEcCCHHHHHHHHHHH
Confidence 86544333456777777777777765
No 22
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=93.41 E-value=0.13 Score=59.30 Aligned_cols=53 Identities=15% Similarity=0.328 Sum_probs=46.0
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeT 170 (749)
..+.|++|+.++.|++|+.+ +++++||.+.+ .+|+.+.++| +.||||+|+...
T Consensus 165 ~~~~gv~i~~~~~v~~Li~~-~g~v~Gv~~~~~~~G~~~~i~A-~~VVlATGG~~~ 218 (621)
T 2h88_A 165 SLRYDTSYFVEYFALDLLME-NGECRGVIALCIEDGTIHRFRA-KNTVIATGGYGR 218 (621)
T ss_dssp HTTSCCEEEETEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEE-EEEEECCCCCGG
T ss_pred HHhCCCEEEEceEEEEEEEE-CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCcccc
Confidence 45679999999999999987 57999999986 4788888999 899999999864
No 23
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=93.41 E-value=0.25 Score=43.07 Aligned_cols=90 Identities=19% Similarity=0.215 Sum_probs=59.5
Q ss_pred cccccCceeEEecCCCCCCcceeeeccceEEeecCCCCCCceeeEEeccchhh----hcCCCceeEEEecccceEEEEec
Q psy3407 548 QVFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQV----YDKSRPYTFKVNFNPYSFVLFAA 623 (749)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 623 (749)
++.++|-|.-+=.....|..-|+-|.++.|..-..+...+-..+|.-.....+ -+..+|+.|+|....-.-..|.|
T Consensus 4 ~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~~F~i~~~~~r~~~l~a 83 (113)
T 1pls_A 4 KRIREGYLVKKGSVFNTWKPMWVVLLEDGIEFYKKKSDNSPKGMIPLKGSTLTSPCQDFGKRMFVFKITTTKQQDHFFQA 83 (113)
T ss_dssp CCSEEEEEEEESSSSSCCEEEEEEEETTEEEEESSTTCSSCSEEEESSSCCEESSCCSSCCSSSEEEEEETTTEEEEEEC
T ss_pred CCcEEEEEEEeCCCCCCceEEEEEEECCEEEEEeCCCCCCcceEEEcCCCEEEEecCCCCCCccEEEEEcCCCCEEEEEC
Confidence 45566766544344567999999999998887666654444444544333322 24568899999765444555777
Q ss_pred CChhhhhHHHHhee
Q psy3407 624 PDESQLFDWLQDIM 637 (749)
Q Consensus 624 ~~~~~~~~~~~~~~ 637 (749)
.++.++-+|++.|.
T Consensus 84 ~s~~e~~~Wi~ai~ 97 (113)
T 1pls_A 84 AFLEERDAWVRDIN 97 (113)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 88888888887664
No 24
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=93.30 E-value=0.2 Score=58.09 Aligned_cols=52 Identities=19% Similarity=0.360 Sum_probs=44.8
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeT 170 (749)
.+.|++|+.++.|++|+.+ +++++||.+.+ .+|+.+.++| +.||||+|++..
T Consensus 169 ~~~gv~i~~~~~v~~L~~~-~g~v~Gv~~~~~~~G~~~~i~A-~~VVlATGG~~~ 221 (660)
T 2bs2_A 169 LKLGVSIQDRKEAIALIHQ-DGKCYGAVVRDLVTGDIIAYVA-KGTLIATGGYGR 221 (660)
T ss_dssp HHHTCEEECSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEC-SEEEECCCCCGG
T ss_pred HhCCCEEEECcEEEEEEec-CCEEEEEEEEECCCCcEEEEEc-CEEEEccCcchh
Confidence 4568999999999999987 57999999886 4788888999 899999999863
No 25
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4; pleckstrin homoloy domain, signal transduction, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=93.30 E-value=0.25 Score=42.94 Aligned_cols=90 Identities=18% Similarity=0.265 Sum_probs=61.8
Q ss_pred cccccCceeEEecCCCCCCcceeeeccceEEeecCCCCCCceeeEEeccch---hhhcCCCceeEEEecccceEEEEecC
Q psy3407 548 QVFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFS---QVYDKSRPYTFKVNFNPYSFVLFAAP 624 (749)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (749)
.+..+|-|.-+-.....|..-|+-|.++.|..-..+...+...+|.-.... ..-+..+|+.|+|....-.-..|.|.
T Consensus 7 ~~~~~G~L~K~~~~~~~Wk~RwfvL~~~~L~yyk~~~~~~~~~~i~L~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~a~ 86 (109)
T 1wgq_A 7 GSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFYVFKAD 86 (109)
T ss_dssp SCSCEEEEEEESSTTSCCEEEEEEEETTEEEEESCTTCSSCSEEEECSSEEEEECCCSSCSSSEEEEEETTEEEEEEECS
T ss_pred CCeEEEEEEeCCCCCCCceeEEEEEeCCEEEEECCCCcCccCceEECCCCEEEECCCCCCCCcEEEEEeCCCeEEEEECC
Confidence 345567776554556789999999999999887666554443444322222 22234678999998665555678899
Q ss_pred ChhhhhHHHHhee
Q psy3407 625 DESQLFDWLQDIM 637 (749)
Q Consensus 625 ~~~~~~~~~~~~~ 637 (749)
++.++-+|++.|.
T Consensus 87 s~~e~~~Wi~al~ 99 (109)
T 1wgq_A 87 DAHSTQRWIDAFQ 99 (109)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999988653
No 26
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=93.02 E-value=0.15 Score=57.43 Aligned_cols=55 Identities=18% Similarity=0.391 Sum_probs=45.0
Q ss_pred hccCCCeEEEcccEEEEEEeCCCC------cEEEEEEEe-cCCeEEEEEeccEEEEccCCCCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKL------KAYGVEYIN-SQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~gg------rAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeT 170 (749)
+.+++|++|++++.|++|+.++++ +++||.+.+ .+|+...++| +.||||+|+...
T Consensus 148 ~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~~~ 209 (540)
T 1chu_A 148 ALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHA-KAVVLATGGASK 209 (540)
T ss_dssp HHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEEC-SEEEECCCCCGG
T ss_pred HHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCccc
Confidence 334479999999999999984234 899999986 3688788999 899999998753
No 27
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural genomics, spectrin beta chain, brain 2, KIAA0302; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=92.80 E-value=0.07 Score=47.72 Aligned_cols=90 Identities=22% Similarity=0.365 Sum_probs=60.5
Q ss_pred ccccccCceeEEecC--------CCCCCcceeeeccceEEeecCCCC------CCc---eeeEEeccchhhhc-CCCcee
Q psy3407 547 DQVFRSGNLMYKIND--------KSAWTPGFVNLQNGILTVKEAPNS------PKN---ISVIQCHSFSQVYD-KSRPYT 608 (749)
Q Consensus 547 ~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~------~~~---~~~~~~~~~~~~~~-~~~~~~ 608 (749)
..|.+.|-|+-|-.- ...|..-|+-|.++.|..-..+.. |+. |++..|.. .-..| +.||+.
T Consensus 6 ~~v~~eG~L~kk~~~~~~gk~~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~-~~~~~~~~r~~~ 84 (123)
T 1wjm_A 6 SGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGEVPVSLARAQG-SVAFDYRKRKHV 84 (123)
T ss_dssp CCCCEEEEEEEEEEEEETTEECSCCCCEEEEEEEETTEEEEESSHHHHTTTCBSSSCCCEECTTCEE-EECTTCSSCSSE
T ss_pred CCeEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEEcccccccCcccCCCceEEccCcEE-eecccccCCCCE
Confidence 345677877776542 678999999999999876433322 222 33322211 11112 679999
Q ss_pred EEEecccceEEEEecCChhhhhHHHHhee
Q psy3407 609 FKVNFNPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
|++....-.-.+|.|.++.++-+|++.|-
T Consensus 85 F~i~~~~~~~~~f~A~s~~e~~~Wi~ai~ 113 (123)
T 1wjm_A 85 FKLGLQDGKEYLFQAKDEAEMSSWLRVVN 113 (123)
T ss_dssp EEEECSSSCEEEEECSSHHHHHHHHHHHH
T ss_pred EEEEEcCCcEEEEECCCHHHHHHHHHHHH
Confidence 99987765566799999999999998764
No 28
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY, structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.70A {Bacillus halodurans}
Probab=92.66 E-value=0.15 Score=57.70 Aligned_cols=62 Identities=16% Similarity=0.149 Sum_probs=51.7
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhcCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLSGIG 180 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIG 180 (749)
+.+.|++|++++.|++|+.+ +++++||++.+. +|+...++| +.||+|+|+- +.+|+...|+.
T Consensus 180 a~~~G~~i~~~~~V~~l~~~-~g~v~gV~~~d~~tg~~~~i~A-~~VV~AaG~~-s~~l~~~~g~~ 242 (561)
T 3da1_A 180 AVARGAVALNYMKVESFIYD-QGKVVGVVAKDRLTDTTHTIYA-KKVVNAAGPW-VDTLREKDRSK 242 (561)
T ss_dssp HHHTTCEEEESEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEE-EEEEECCGGG-HHHHHHTTTCC
T ss_pred HHHcCCEEEcCCEEEEEEEc-CCeEEEEEEEEcCCCceEEEEC-CEEEECCCcc-hHHHHHhcCCC
Confidence 34568999999999999987 678999999874 577788999 8999999974 78888877764
No 29
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=92.63 E-value=0.21 Score=57.21 Aligned_cols=55 Identities=18% Similarity=0.352 Sum_probs=45.7
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCCh
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGSP 171 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeTP 171 (749)
+.+.+|++|+.++.|++|+.+ +++++||.+.+ .+|+...++| +.||||+|+....
T Consensus 144 ~~~~gnv~i~~~~~v~~l~~~-~g~v~Gv~~~~~~~G~~~~i~A-~~VVlAtGg~s~~ 199 (602)
T 1kf6_A 144 SLQFPQIQRFDEHFVLDILVD-DGHVRGLVAMNMMEGTLVQIRA-NAVVMATGGAGRV 199 (602)
T ss_dssp HTTCTTEEEEETEEEEEEEEE-TTEEEEEEEEETTTTEEEEEEC-SCEEECCCCCGGG
T ss_pred HHhCCCcEEEeCCEEEEEEEe-CCEEEEEEEEEcCCCcEEEEEc-CeEEECCCCCccc
Confidence 344566999999999999987 57999998876 4788788999 7899999987644
No 30
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=92.16 E-value=0.32 Score=42.21 Aligned_cols=92 Identities=10% Similarity=0.168 Sum_probs=57.1
Q ss_pred cccccccCceeEEecCCCCCCcceeeeccceEEeecCCCCCCceeeEEeccchh--h---hcCCCceeEEEec-------
Q psy3407 546 HDQVFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQ--V---YDKSRPYTFKVNF------- 613 (749)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~------- 613 (749)
...+.++|-|+-+=.....|..-|+-|.++.|..-..++..+-..+|.-....- + -++.++|.|+|..
T Consensus 5 ~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~f~i~~~~~~~~~ 84 (118)
T 1v89_A 5 SSGPIKMGWLKKQRSIVKNWQQRYFVLRAQQLYYYKDEEDTKPQGCMYLPGCTIKEIATNPEEAGKFVFEIIPASWDQNR 84 (118)
T ss_dssp SSCEEEEEEEEEECSSSSCEEEEEEEEETTEEEEESSSSCCSCSEEECSTTEEEEEECCCSSCCCCCEEEEEESCCSSCC
T ss_pred CCCCcEEEEEEecCCCCCCccEEEEEEECCEEEEEeCCCCCCceEEEECCCCEEEEcCcCcccCCcceEEEECCcccccc
Confidence 345666777665544456798888889998888766655443333333222111 1 1346789999876
Q ss_pred ccceEEEEecCChhhhhHHHHhee
Q psy3407 614 NPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
.+-.-.+|.|+++.++-+|+..|.
T Consensus 85 ~~~~~~~l~a~s~~e~~~Wi~al~ 108 (118)
T 1v89_A 85 MGQDSYVLMASSQAEMEEWVKFLR 108 (118)
T ss_dssp SSCCCEEEECSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCHHHHHHHHHHHH
Confidence 244445567777777778877653
No 31
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain, signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Probab=92.05 E-value=0.24 Score=42.27 Aligned_cols=88 Identities=19% Similarity=0.326 Sum_probs=54.9
Q ss_pred ccccCceeEEecCC----CCCCcceeeeccceEEeecCCCCCCceeeEEeccchhh------hcCCCceeEEEecccceE
Q psy3407 549 VFRSGNLMYKINDK----SAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQV------YDKSRPYTFKVNFNPYSF 618 (749)
Q Consensus 549 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 618 (749)
+.++|-|.-+-... ..|..-|+-|.++.|..-..+...+-..+|.-....-+ -+..+|+.|.|....-.-
T Consensus 3 v~~~G~L~K~~~~~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~i~~~~~r~ 82 (108)
T 1u5d_A 3 VIKQGYLEKKSKDHSFFGSEWQKRWCVVSRGLFYYYANEKSKQPKGTFLIKGYSVRMAPHLRRDSKKESCFELTSQDRRT 82 (108)
T ss_dssp EEEEEEEEEEEECSSSSCEEEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECGGGCSSGGGGGEEEEECSSSCC
T ss_pred ccEEEEEEEcCCCCCccccCceeeEEEEeCCEEEEecCCCCCCCCEEEEecceEEEeCCccccccCCcceEEEEcCCCcE
Confidence 44556555443322 67888888898888887666655443334433222211 234578999987654244
Q ss_pred EEEecCChhhhhHHHHhe
Q psy3407 619 VLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~ 636 (749)
..|.|+++.+.-+|++.|
T Consensus 83 ~~l~a~s~~e~~~Wi~ai 100 (108)
T 1u5d_A 83 YEFTATSPAEARDWVDQI 100 (108)
T ss_dssp EEEECSSHHHHHHHHHHH
T ss_pred EEEECCCHHHHHHHHHHH
Confidence 457788888888888765
No 32
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=91.95 E-value=0.32 Score=42.34 Aligned_cols=90 Identities=13% Similarity=0.191 Sum_probs=61.6
Q ss_pred cccccccCceeEEecCCCCCCcceeeeccceEEeecCCC-CCCceeeEEecc--chhhhcCCCceeEEEecccceEEEEe
Q psy3407 546 HDQVFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPN-SPKNISVIQCHS--FSQVYDKSRPYTFKVNFNPYSFVLFA 622 (749)
Q Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (749)
.+.+..+|-|.-+ ....|..-|.-|.++.|..-..+. .++....|.... ....-+..+||.|++..+.---..|.
T Consensus 5 ~~~~~~~G~L~K~--~~k~Wk~RwfvL~~~~L~yyk~~~~~~~~~~~i~l~~~~v~~~~~~~~~~~F~i~~~~~r~~~l~ 82 (107)
T 2cof_A 5 SSGLETSSYLNVL--VNSQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGCEVVPDPSPDHLYSFRILHKGEELAKLE 82 (107)
T ss_dssp CCCCTTCCEEEEE--ETTEEEEEEEEECSSCEEEECSSTTCSEEEEEECTTTCEEECCCBTTBSCEEEEEETTEEEEEEE
T ss_pred CCCCcEeEEEEEe--cCCCcceEEEEEECCEEEEEeCCcccCCCeeEEeccceEEEECCCCCCCeEEEEEeCCCeEEEEE
Confidence 3456677877665 566899999999999887766554 344333333222 22234567899999987534445788
Q ss_pred cCChhhhhHHHHhee
Q psy3407 623 APDESQLFDWLQDIM 637 (749)
Q Consensus 623 ~~~~~~~~~~~~~~~ 637 (749)
|.++.++-+|++.|.
T Consensus 83 A~s~~e~~~Wi~al~ 97 (107)
T 2cof_A 83 AKSSEEMGHWLGLLL 97 (107)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH
Confidence 999999999998764
No 33
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=91.90 E-value=0.091 Score=57.20 Aligned_cols=56 Identities=16% Similarity=0.051 Sum_probs=37.8
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhc
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLS 177 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~S 177 (749)
.++.+.+|++++.|++|+.+ +++++||+.. +|+ ++.| +.||++|+.-.|.+.|+-.
T Consensus 231 ~~~~Gg~I~~~~~V~~I~~~-~~~~~gV~~~--~g~--~~~a-d~VV~~a~~~~~~~~Ll~~ 286 (501)
T 4dgk_A 231 FQDLGGEVVLNARVSHMETT-GNKIEAVHLE--DGR--RFLT-QAVASNADVVHTYRDLLSQ 286 (501)
T ss_dssp HHHTTCEEECSCCEEEEEEE-TTEEEEEEET--TSC--EEEC-SCEEECCC-----------
T ss_pred HHHhCCceeeecceeEEEee-CCeEEEEEec--CCc--EEEc-CEEEECCCHHHHHHHhccc
Confidence 44568999999999999998 6899999885 565 4667 8899999998888777643
No 34
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase, oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB: 2rgo_A*
Probab=91.90 E-value=0.19 Score=56.99 Aligned_cols=60 Identities=12% Similarity=0.179 Sum_probs=49.5
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
.+.|++|++++.|++|+.+ +++++||++.+. +|+...++| +.||+|+|+. +..|+...|+
T Consensus 199 ~~~Ga~i~~~t~V~~l~~~-~~~v~gV~~~d~~tg~~~~i~A-~~VV~AaG~w-s~~l~~~~g~ 259 (571)
T 2rgh_A 199 AEDGAYLVSKMKAVGFLYE-GDQIVGVKARDLLTDEVIEIKA-KLVINTSGPW-VDKVRNLNFT 259 (571)
T ss_dssp HHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEB-SCEEECCGGG-HHHHHTTCCS
T ss_pred HHcCCeEEeccEEEEEEEe-CCEEEEEEEEEcCCCCEEEEEc-CEEEECCChh-HHHHHHhhcc
Confidence 4568999999999999987 568999999874 566668999 9999999976 7788766554
No 35
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP: b.55.1.1
Probab=91.70 E-value=0.092 Score=47.14 Aligned_cols=88 Identities=11% Similarity=0.266 Sum_probs=58.5
Q ss_pred ccccCceeEEec--------CCCCCCcceeeeccceEEeecCCCCC-----------CceeeEEeccchhhhc-CCCcee
Q psy3407 549 VFRSGNLMYKIN--------DKSAWTPGFVNLQNGILTVKEAPNSP-----------KNISVIQCHSFSQVYD-KSRPYT 608 (749)
Q Consensus 549 ~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~-~~~~~~ 608 (749)
|-..|-|+-|-- ....|..-|+-|+++.|..-..+... .-|++-.|.. .-..| +.||+.
T Consensus 8 v~k~G~L~rK~~~~~~gkk~~~~~Wk~rw~vL~~~~L~~yk~~~~~~~~~~~~~~~~~~i~L~~~~v-~~~~d~~kr~~~ 86 (122)
T 1dro_A 8 EGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEPSYDLQNAAI-EIASDYTKKKHV 86 (122)
T ss_dssp SSEEEEEEEECSCCCCCCTTCCCCCEEEEEEESSSCCBEESSSSHHHHCTTCCSSCCCBCCCSSCCC-EECCSSSSSTTE
T ss_pred eEEEEEEEEEEEEeCCCccCCCCCccEEEEEEECCEEEEEeCCcccccCCCcccCCCceEECCCCEE-EeCCCCCCCCeE
Confidence 445666665532 24678888888988888754433321 2255544422 12233 469999
Q ss_pred EEEecccceEEEEecCChhhhhHHHHhee
Q psy3407 609 FKVNFNPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
|++.-.+-.-.+|.|+++.++-+|++.|-
T Consensus 87 F~l~t~~~~~~lfqA~s~~e~~~Wi~ai~ 115 (122)
T 1dro_A 87 LRVKLANGALFLLQAHDDTEMSQWVTSLK 115 (122)
T ss_dssp EEEECSSSCEEEEECSSSHHHHHHHHHHH
T ss_pred EEEEEcCCCEEEEECCCHHHHHHHHHHHH
Confidence 99987676777899999999999998763
No 36
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH domain, phret1, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=91.65 E-value=0.51 Score=42.81 Aligned_cols=93 Identities=18% Similarity=0.305 Sum_probs=60.7
Q ss_pred ccccccccCceeEEecCCCCCCcceeee-ccceEEeecCCCCCCceeeE-------------EeccchhhhcCCCceeEE
Q psy3407 545 GHDQVFRSGNLMYKINDKSAWTPGFVNL-QNGILTVKEAPNSPKNISVI-------------QCHSFSQVYDKSRPYTFK 610 (749)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~ 610 (749)
|...|.++|-|+-+=+....|..-|.-| .+|.|..-..+...+-...| .|.....--++.+++.|+
T Consensus 4 ~~~~v~~~G~L~K~g~~~k~WkkRwFVL~~~~~L~Yyk~~~~~~~~g~i~l~~~~~~i~~~~~~~~v~~~~~~~~~~~F~ 83 (130)
T 2d9v_A 4 GSSGLVRGGWLWRQSSILRRWKRNWFALWLDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQECQDVQPPEGRSRDGLLT 83 (130)
T ss_dssp SCCCEEEEEEEEEECSSSCCEEEEEEEEETTTEEEEESSSSTTSEEEEEECTTTEEEEEEGGGCSSCCCCSSCCTTTEEE
T ss_pred CCCceeEEEEEEeecCccCCceeeEEEEccCCEEEEEeCCCCCCcCceEecccceeEEeccccccccCCCCCCCcCcEEE
Confidence 5566777887765544556788888888 88888877666543211111 122222223467889999
Q ss_pred EecccceEEEEecCChhhhhHHHHhee
Q psy3407 611 VNFNPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 611 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
|...+-.-..|.|.++.+.-+|++.|.
T Consensus 84 I~~~~~r~~~l~A~s~~e~~~Wi~al~ 110 (130)
T 2d9v_A 84 VNLREGSRLHLCAETRDDAIAWKTALM 110 (130)
T ss_dssp EEETTSCEEEEECSSHHHHHHHHHHHH
T ss_pred EEeCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 987554445678888888888988764
No 37
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=91.58 E-value=0.51 Score=41.52 Aligned_cols=97 Identities=16% Similarity=0.210 Sum_probs=58.9
Q ss_pred ccccccccccccCceeEEe-cCCCCCCcceeeeccceEEeecCCCCCCceeeEEeccchhh-----hcCCCceeEEEecc
Q psy3407 541 ISRTGHDQVFRSGNLMYKI-NDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQV-----YDKSRPYTFKVNFN 614 (749)
Q Consensus 541 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 614 (749)
|.|.-...+..+|-|+-+- +....|..-|.-|.++.|..-..+...+-..+|.-..+.-. -...++|.|++.-.
T Consensus 3 ~~r~p~~~~~~~G~L~K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~v~~~~~~~~~~~~~~f~i~~~ 82 (123)
T 1upq_A 3 LRRDPNLPVHIRGWLHKQDSSGLRLWKRRWFVLSGHCLFYYKDSREESVLGSVLLPSYNIRPDGPGAPRGRRFTFTAEHP 82 (123)
T ss_dssp CCCCTTSCEEEEEEEEEECSSSSCCEEEEEEEEETTEEEEESSTTCCSCCEEEEGGGCEEEECCSSCTTSSSSEEEEECT
T ss_pred hhhCCCCCceEEEEEEeeCCCCCCCceeEEEEEeCCEEEEECCCCCcccceEEECCCCEEEECCCCccCCCcEEEEEECC
Confidence 3444555567777766554 24567999999999999998776665555555543333211 12346788877554
Q ss_pred cceEEEEecCChhhhhHHHHhee
Q psy3407 615 PYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
.-.-.+|.|.++.++-+|++.|.
T Consensus 83 ~~r~~~l~a~s~~e~~~Wi~al~ 105 (123)
T 1upq_A 83 GMRTYVLAADTLEDLRGWLRALG 105 (123)
T ss_dssp TSCCEEEECSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCHHHHHHHHHHHH
Confidence 32333455666666666666554
No 38
>1eaz_A Tandem PH domain containing protein-1; lipid-binding protein, lipid degradation, phosphatidylinositol (3, 4)-bisphosphate, signalling; HET: CIT; 1.40A {Homo sapiens} SCOP: b.55.1.1
Probab=91.40 E-value=0.43 Score=42.05 Aligned_cols=91 Identities=12% Similarity=0.250 Sum_probs=56.7
Q ss_pred ccccccccCceeEEecCCCCCCcceeeeccceEEeecCCCCCCceeeEEeccchhhhc------CCCceeEEEecccceE
Q psy3407 545 GHDQVFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYD------KSRPYTFKVNFNPYSF 618 (749)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 618 (749)
....+.++|-|.-+-.....|..-|+-|.++.|..-..++..+-..+|.-.....|.. ..+++.|.|... -.-
T Consensus 10 ~~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~~~~~~~~~~~~F~i~~~-~r~ 88 (125)
T 1eaz_A 10 QDSAVIKAGYCVKQGAVMKNWKRRYFQLDENTIGYFKSELEKEPLRVIPLKEVHKVQECKQSDIMMRDNLFEIVTT-SRT 88 (125)
T ss_dssp --CCCSEEEEEEEECTTTCCEEEEEEEECSSEEEEESSTTCSSCSEEEEGGGCCEEEECTTHHHHTCSSEEEEECS-SCE
T ss_pred CCCCccEEEEEEEeCCCCCCcceEEEEEeCCEEEEEcCCCCCcceeEEEcccceEEeeccccccCCcCCEEEEEeC-CcE
Confidence 3456677777765544456799999999999998876665544445555444333322 356788887643 333
Q ss_pred EEEecCChhhhhHHHHhe
Q psy3407 619 VLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~ 636 (749)
.+|.|.++.++-+|++.|
T Consensus 89 ~~l~a~s~~e~~~W~~al 106 (125)
T 1eaz_A 89 FYVQADSPEEMHSWIKAV 106 (125)
T ss_dssp EEEECSSHHHHHHHHHHH
T ss_pred EEEEcCCHHHHHHHHHHH
Confidence 446666666666676655
No 39
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides; pleckstrin, inositol tetrakisphosphate signal transduction protein, adaptor protein; HET: 4IP; 1.80A {Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Probab=91.30 E-value=0.6 Score=41.45 Aligned_cols=93 Identities=18% Similarity=0.335 Sum_probs=62.4
Q ss_pred cccccccccCceeEEecCCCCCCcceeeeccceEEeecCCCCCCceeeEE---eccchhhhcCCCceeEEEecccceEEE
Q psy3407 544 TGHDQVFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQ---CHSFSQVYDKSRPYTFKVNFNPYSFVL 620 (749)
Q Consensus 544 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (749)
.....+.++|-|.-+=.....|..-|.-|.++.|..-..+...+-..+|. |......-+..+|+.|.|.. |-.-..
T Consensus 13 ~~~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~F~i~~-~~r~~~ 91 (126)
T 1fao_A 13 TAPSLGTKEGYLTKQGGLVKTWKTRWFTLHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVF-PFRTFY 91 (126)
T ss_dssp --CCTTCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEEGGGCCEEEEECSSSSSSEEEEEE-TTEEEE
T ss_pred CCCCCccEEEEEEEcCCCCCCcccEEEEEECCEEEEeCCCCCCCceeEEEccceEEEEecccCCCCCEEEEEe-CCcEEE
Confidence 33445667777665545567799999999999998876665544444443 33233333567899999975 555566
Q ss_pred EecCChhhhhHHHHhee
Q psy3407 621 FAAPDESQLFDWLQDIM 637 (749)
Q Consensus 621 ~~~~~~~~~~~~~~~~~ 637 (749)
|.|+++.+.-+|+..|.
T Consensus 92 l~a~s~~e~~~Wi~al~ 108 (126)
T 1fao_A 92 LCAKTGVEADEWIKILR 108 (126)
T ss_dssp EECSSHHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHHH
Confidence 78888888888887664
No 40
>2cod_A Centaurin-delta 1; ARF GAP and RHO GAP with ankyrin repeat and PH domains (ARAP) 2, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=91.25 E-value=0.36 Score=42.34 Aligned_cols=89 Identities=18% Similarity=0.255 Sum_probs=52.9
Q ss_pred ccccccccCceeEEecC--CCCCCcceeeeccceEEeecCCCCCCceeeEEeccchhhhcCCCceeEEEecccceEEEEe
Q psy3407 545 GHDQVFRSGNLMYKIND--KSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFA 622 (749)
Q Consensus 545 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 622 (749)
+...+.++|-|. |-.. ...|..-|+-|.++.|..-..+...+-..+|.-.....|-.. .++.|.|. .|-.-..|.
T Consensus 4 ~~~~~~~~G~L~-K~~~~~~~~WkkR~fvL~~~~L~yy~~~~~~~~~g~i~l~~~~~v~~~-~~~~F~i~-~~~r~~~l~ 80 (115)
T 2cod_A 4 GSSGKVKSGWLD-KLSPQGKRMFQKRWVKFDGLSISYYNNEKEMYSKGIIPLSAISTVRVQ-GDNKFEVV-TTQRTFVFR 80 (115)
T ss_dssp CCSCCCEEEEEE-ECCSSSSSCCEEEEEEECSSEEEEEESSCCSSCCCEEETTTEEEEEEE-TTTEEEEE-ESSCCEEEE
T ss_pred CCCCccEEEEEE-EcCCCCCCCCceEEEEEECCEEEEEcCCCCcccCCEEECCcceEEEeC-CCCEEEEE-eCCcEEEEE
Confidence 445566777655 4433 467999999999999988776665554455554443333322 25666665 344444455
Q ss_pred cCChhhhhHHHHhe
Q psy3407 623 APDESQLFDWLQDI 636 (749)
Q Consensus 623 ~~~~~~~~~~~~~~ 636 (749)
|.++.++-+|++.|
T Consensus 81 a~s~~e~~~Wi~~l 94 (115)
T 2cod_A 81 VEKEEERNDWISIL 94 (115)
T ss_dssp CSSHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH
Confidence 55555555565544
No 41
>1u5f_A SRC-associated adaptor protein; PH domain of SKAP-HOM, artefactual dimerization induced by V derived sequence, signaling protein; 1.90A {Mus musculus} SCOP: b.55.1.1 PDB: 1u5g_A
Probab=90.64 E-value=0.67 Score=42.65 Aligned_cols=95 Identities=13% Similarity=0.256 Sum_probs=65.2
Q ss_pred ccccccCceeEEecCC----CCCCcceeeeccceEEeecCCCCCCceeeEEeccchhh------hcCCCceeEEEecccc
Q psy3407 547 DQVFRSGNLMYKINDK----SAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQV------YDKSRPYTFKVNFNPY 616 (749)
Q Consensus 547 ~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 616 (749)
..+.++|-|.-+-... ..|..-|+-|.++.|..-..+...+-..+|.-...+-+ -+..+++.|+|...--
T Consensus 15 ~~~~~~G~L~K~g~~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~F~I~~~~~ 94 (148)
T 1u5f_A 15 PFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDK 94 (148)
T ss_dssp SSEEEEEEEEEECCCSSCSSCSEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEECTTSCSSTTGGGEEEEECTTS
T ss_pred CCccEEEEEEEeCCCCCCcCCCceeEEEEEECCEEEEEcCCCCcccceEEEcCCcEEEECCCcccCCCCccEEEEECCCC
Confidence 4566777765443322 37999999999999988777766554555554444322 2556789999987543
Q ss_pred eEEEEecCChhhhhHHHHheeeEEE
Q psy3407 617 SFVLFAAPDESQLFDWLQDIMISIK 641 (749)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~~~~~~ 641 (749)
.-.+|.|.++.++-+|++.|.-.|+
T Consensus 95 r~~~l~a~s~~e~~~Wi~al~~~i~ 119 (148)
T 1u5f_A 95 RIYQFTAASPKDAEEWVQQLKFILQ 119 (148)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHHCC
T ss_pred cEEEEECCCHHHHHHHHHHHHHHHH
Confidence 4556788999999999888765443
No 42
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator, pleckstrin homology domain, STR genomics consortium, SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Probab=90.59 E-value=0.72 Score=41.77 Aligned_cols=90 Identities=18% Similarity=0.244 Sum_probs=56.2
Q ss_pred cccccCceeEEec-------CCCCCCcceeeeccceEEeecCCCCC------------CceeeEEeccc--hhhh--cCC
Q psy3407 548 QVFRSGNLMYKIN-------DKSAWTPGFVNLQNGILTVKEAPNSP------------KNISVIQCHSF--SQVY--DKS 604 (749)
Q Consensus 548 ~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~--~~~~--~~~ 604 (749)
.|.+.|-|..|-- .+..|..-|+-|+++.|..-..+.+. +...+|.-+.- ...+ .+.
T Consensus 7 ~v~keG~L~rK~~~~~gkk~~~r~W~~~w~VL~~~~L~~yKd~~~~~~~~~~~~~~~~~~~~~i~L~~a~v~~~~~d~~k 86 (124)
T 3pp2_A 7 TLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFSTPEYTVELRGATLSWAPKDKSS 86 (124)
T ss_dssp --CEEEEEEEEEEEETTEECSSCCCEEEEEEEETTEEEEESCSBCC---CBCCGGGGCSEEEEEECTTCEEEECCGGGCS
T ss_pred cEEEEEEEEEEEeccCCccCCCCCceEEEEEEECCEEEEEecCccccccCccCcccccCCcceEEcCCCEEEecccccCC
Confidence 4556666666521 33589999999999988764322221 22233332211 1121 346
Q ss_pred CceeEEEecccceEEEEecCChhhhhHHHHhee
Q psy3407 605 RPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
|++.|++.-..-.-.+|.|+++.++-+|++.|-
T Consensus 87 rk~vF~l~t~~~~~ylfqA~s~~e~~~Wi~aI~ 119 (124)
T 3pp2_A 87 RKNVLELRSRDGSEYLIQHDSEAIISTWHKAIA 119 (124)
T ss_dssp SSSEEEEECTTSCEEEEECSCHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCEEEEECCCHHHHHHHHHHHH
Confidence 899999976555556899999999999998764
No 43
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=90.13 E-value=0.21 Score=51.14 Aligned_cols=61 Identities=16% Similarity=0.216 Sum_probs=45.3
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhc-CCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLS-GIG 180 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~S-GIG 180 (749)
.+++.|++|++++.|++|+.++++ +..|+. .+|+..+++| +.||+|+|+- |++|+... |+.
T Consensus 159 ~~~~~Gv~i~~~~~v~~i~~~~~~-~~~v~~--~~g~~~~~~a-~~VV~A~G~~-s~~l~~~~~g~~ 220 (369)
T 3dme_A 159 DAESDGAQLVFHTPLIAGRVRPEG-GFELDF--GGAEPMTLSC-RVLINAAGLH-APGLARRIEGIP 220 (369)
T ss_dssp HHHHTTCEEECSCCEEEEEECTTS-SEEEEE--CTTSCEEEEE-EEEEECCGGG-HHHHHHTEETSC
T ss_pred HHHHCCCEEECCCEEEEEEEcCCc-eEEEEE--CCCceeEEEe-CEEEECCCcc-hHHHHHHhcCCC
Confidence 344568999999999999987433 334544 3676667888 8899999986 78888776 653
No 44
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus musculus} SCOP: b.55.1.1 PDB: 1mph_A
Probab=89.99 E-value=0.35 Score=41.33 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=49.5
Q ss_pred cCCCCCCcceeeeccceEEeecCCCC--------CC-ceeeEEeccchhhhcCCCceeEEEecccceEEEEecCChhhhh
Q psy3407 560 NDKSAWTPGFVNLQNGILTVKEAPNS--------PK-NISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLF 630 (749)
Q Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 630 (749)
.....|..-|+-|.++.|..-..+.+ |. .|++..|..-...-...+|+.|+|....-.-.+|.|+++.++-
T Consensus 18 ~~~~~Wk~rwfvL~~~~L~yyk~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~F~i~~~~~~~~~~~A~s~~e~~ 97 (106)
T 1btn_A 18 ASSRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLRLSDGNEYLFQAKDDEEMN 97 (106)
T ss_dssp CSCCCCEEEEEEEETTEEEEESSHHHHHHTCCSSSCCCEECTTCEEEECSSCCSSSSEEEEECTTSCEEEEECSSHHHHH
T ss_pred CCCCChhEEEEEEECCEEEEEeCCcccccCCCCCCcceEECCCCEEEEcccccCCccEEEEEecCCCEEEEECCCHHHHH
Confidence 34566888888888888876543331 11 1333222211111235689999998766566679999999999
Q ss_pred HHHHhe
Q psy3407 631 DWLQDI 636 (749)
Q Consensus 631 ~~~~~~ 636 (749)
+|++.|
T Consensus 98 ~Wi~ai 103 (106)
T 1btn_A 98 TWIQAI 103 (106)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 999865
No 45
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=89.79 E-value=0.86 Score=39.47 Aligned_cols=92 Identities=20% Similarity=0.291 Sum_probs=57.7
Q ss_pred ccccccccCceeEEecCCCCCCcceeeeccceEEeecCCCCCCceeeEEeccchhh---h-cCCCceeEEEecccceEEE
Q psy3407 545 GHDQVFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQV---Y-DKSRPYTFKVNFNPYSFVL 620 (749)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~ 620 (749)
+...+.++|-|.-+=.....|..=|.-|.++.|..-..++..+-..+|.-.....| - ...+++.|.|..+--. ..
T Consensus 4 ~~~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~~F~i~~~~r~-~~ 82 (115)
T 2dn6_A 4 GSSGVLKQGYMMKKGHRRKNWTERWFVLKPNIISYYVSEDLKDKKGDILLDENCCVESLPDKDGKKCLFLVKCFDKT-FE 82 (115)
T ss_dssp CCCSCSEEEEEEEECTTSSCEEEEEEEECSSCEEEESSTTCSSEEEEECCCTTCEEEEECCCTTCCSEEEEECSSCE-EE
T ss_pred CCCCceEEEEEEecCCCCCCcEEeEEEEECCEEEEeCCCCCcccCcEEEecCcEEEEECCCCCCCeeEEEEEeCCCE-EE
Confidence 34566777777655555678999999999999988776665555555544433222 1 2356778877554333 33
Q ss_pred EecCChhhhhHHHHhee
Q psy3407 621 FAAPDESQLFDWLQDIM 637 (749)
Q Consensus 621 ~~~~~~~~~~~~~~~~~ 637 (749)
|.|.++.+.-+|++.|.
T Consensus 83 l~a~s~~e~~~Wi~ai~ 99 (115)
T 2dn6_A 83 ISASDKKKKQEWIQAIH 99 (115)
T ss_dssp EECSSHHHHHHHHHHHH
T ss_pred EEcCCHHHHHHHHHHHH
Confidence 46666666667766553
No 46
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=89.43 E-value=0.5 Score=52.35 Aligned_cols=57 Identities=25% Similarity=0.355 Sum_probs=46.8
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
.+|...+++.|++|+.++.|++|..+ +++++||.+.+.+|+..+++| +.||.|.|.-
T Consensus 115 ~~L~~~a~~~Gv~i~~~~~V~~v~~~-~~~v~gv~~~~~dG~~~~i~a-d~VI~AdG~~ 171 (512)
T 3e1t_A 115 DMLLRNSERKGVDVRERHEVIDVLFE-GERAVGVRYRNTEGVELMAHA-RFIVDASGNR 171 (512)
T ss_dssp HHHHHHHHHTTCEEESSCEEEEEEEE-TTEEEEEEEECSSSCEEEEEE-EEEEECCCTT
T ss_pred HHHHHHHHhCCCEEEcCCEEEEEEEE-CCEEEEEEEEeCCCCEEEEEc-CEEEECCCcc
Confidence 34544444578999999999999987 678999999876787778999 9999999974
No 47
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=89.24 E-value=0.32 Score=56.58 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=43.1
Q ss_pred CeEEEcccEEEEEEeCCC--CcEEEEEEEe-cCCeEEEEEeccEEEEccCCCC
Q psy3407 120 NLIILKNTEVIKILIDSK--LKAYGVEYIN-SQGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 120 NLtIlT~a~V~RIl~d~g--grAtGV~y~d-~~G~~~~V~ArKeVILAAGAIe 169 (749)
|++|+.++.|+.|+.+++ ++++||.+.+ .+|+.+.++| |.||||+|.+.
T Consensus 182 gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~A-k~VVLATGG~g 233 (662)
T 3gyx_A 182 QDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKA-NAMVVACGGAV 233 (662)
T ss_dssp TTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEEC-SEEEECCCCBC
T ss_pred CcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEe-CEEEECCCccc
Confidence 899999999999999854 4999999876 3688888999 89999999876
No 48
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=88.81 E-value=0.43 Score=54.89 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=42.8
Q ss_pred Ce-EEEcccEEEEEEeCCC--CcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCC
Q psy3407 120 NL-IILKNTEVIKILIDSK--LKAYGVEYIN-SQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 120 NL-tIlT~a~V~RIl~d~g--grAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeT 170 (749)
|+ +|+.++.|++|+.+++ ++++||.+.+ .+|+...++| +.||||+|+...
T Consensus 166 gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A-~~VVlAtGG~~~ 219 (643)
T 1jnr_A 166 GEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKA-KAVILATGGATL 219 (643)
T ss_dssp CGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEEC-SEEEECCCCBCS
T ss_pred CCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEc-CEEEECCCcccc
Confidence 89 9999999999999743 3999999875 4677778999 999999998875
No 49
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP: b.55.1.1 PDB: 2i5c_A* 1zm0_A
Probab=88.68 E-value=1.1 Score=38.35 Aligned_cols=90 Identities=12% Similarity=0.250 Sum_probs=53.6
Q ss_pred cccccCceeEEecCCCCCCcceeeeccc--eEEeecCCCCCCceeeEEeccc--hhhhcC------CCceeEEEecccce
Q psy3407 548 QVFRSGNLMYKINDKSAWTPGFVNLQNG--ILTVKEAPNSPKNISVIQCHSF--SQVYDK------SRPYTFKVNFNPYS 617 (749)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~~~~ 617 (749)
.+.++|-|.-+=.....|..=|+-|.++ .|..-+.+...+-..+|.-... ..+-+. .+|+.|.|....-.
T Consensus 6 ~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yyk~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~ 85 (109)
T 2i5f_A 6 VIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITADEV 85 (109)
T ss_dssp CEEEEEEEEEECTTTCCEEEEEEEEETTTTEEEEECTTSCSSCSEEEECTTCEEEEECC--------CCSEEEEECTTCC
T ss_pred ceeEEEEEEEcCCCCCCceEEEEEEeCCCcEEEEECCCCCCCccEEEECCCCEEEEccCCcccccCCCceEEEEEeCCCC
Confidence 4455665544433445687777777765 6766555444333333432221 111111 27899999876555
Q ss_pred EEEEecCChhhhhHHHHhee
Q psy3407 618 FVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~ 637 (749)
-..|.|+++.++-+|++.|.
T Consensus 86 ~~~l~a~s~~e~~~Wi~ai~ 105 (109)
T 2i5f_A 86 HYFLQAATPKERTEWIKAIQ 105 (109)
T ss_dssp EEEEECSSHHHHHHHHHHHH
T ss_pred EEEEEcCCHHHHHHHHHHHH
Confidence 56678899999999988763
No 50
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Probab=88.58 E-value=0.23 Score=52.54 Aligned_cols=53 Identities=26% Similarity=0.204 Sum_probs=42.9
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
.++.+.+|++++.|++|+.+ +++++||+. +|+ +++| +.||+|+++-.+++||-
T Consensus 206 ~~~~G~~i~~~~~V~~i~~~-~~~~~gv~~---~g~--~~~a-d~VV~a~~~~~~~~ll~ 258 (425)
T 3ka7_A 206 ISANGGKIHTGQEVSKILIE-NGKAAGIIA---DDR--IHDA-DLVISNLGHAATAVLCS 258 (425)
T ss_dssp HHHTTCEEECSCCEEEEEEE-TTEEEEEEE---TTE--EEEC-SEEEECSCHHHHHHHTT
T ss_pred HHHcCCEEEECCceeEEEEE-CCEEEEEEE---CCE--EEEC-CEEEECCCHHHHHHhcC
Confidence 34557999999999999998 578999876 454 5778 89999999988887664
No 51
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=88.48 E-value=0.29 Score=52.33 Aligned_cols=54 Identities=22% Similarity=0.318 Sum_probs=41.8
Q ss_pred hhccCCCeEEEccc---EEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 114 PAKFRENLIILKNT---EVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 114 pa~~r~NLtIlT~a---~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
..+++.+++|++++ .|++|+.+ +++++||+.. +|+ +++| +.||+|+|+. |++|+
T Consensus 169 ~~a~~~Gv~i~~~t~~~~V~~i~~~-~~~v~gV~t~--~G~--~i~A-d~VV~AtG~~-s~~l~ 225 (438)
T 3dje_A 169 REAQRMGVKFVTGTPQGRVVTLIFE-NNDVKGAVTA--DGK--IWRA-ERTFLCAGAS-AGQFL 225 (438)
T ss_dssp HHHHHTTCEEEESTTTTCEEEEEEE-TTEEEEEEET--TTE--EEEC-SEEEECCGGG-GGGTS
T ss_pred HHHHhcCCEEEeCCcCceEEEEEec-CCeEEEEEEC--CCC--EEEC-CEEEECCCCC-hhhhc
Confidence 33445689999999 99999987 5688888774 564 5788 8899999986 55554
No 52
>2y7b_A Actin-binding protein anillin; cell cycle; 1.90A {Homo sapiens}
Probab=88.29 E-value=0.47 Score=42.51 Aligned_cols=92 Identities=18% Similarity=0.249 Sum_probs=55.1
Q ss_pred ccccccccCceeEE--ecCCCCCCcceeeeccceEEeecCCCC---CCceeeEEeccch--hhh--c---CCCceeEEEe
Q psy3407 545 GHDQVFRSGNLMYK--INDKSAWTPGFVNLQNGILTVKEAPNS---PKNISVIQCHSFS--QVY--D---KSRPYTFKVN 612 (749)
Q Consensus 545 ~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~--~~~--~---~~~~~~~~~~ 612 (749)
|+..|..+|-|.-+ -.....|..-|.-|.++.|..-..|.. .+-..+|.-.... .|- + ..+|+.|++.
T Consensus 1 ~~~~v~~~G~L~K~~~~~~~~~WkrRwfvL~~~~L~yyk~~~d~~~~~p~g~I~L~~~~~~~v~~~~~~~~~~~~~F~i~ 80 (134)
T 2y7b_A 1 VNSSVEERGFLTIFEDVSGFGAWHRRWCVLSGNCISYWTYPDDEKRKNPIGRINLANCTSRQIEPANREFCARRNTFELI 80 (134)
T ss_dssp CCCCCCEEEEEEEEEEETTEEEEEEEEEEEETTEEEEESSHHHHTTSCCSEEEEGGGBCSSSCEECCTTTCCCTTEEEEE
T ss_pred CCCCceEEeeEEEEcCCCCCCCcEEEEEEEECCEEEEECCCCcccccCceEEEEhhhCccccccccchhhccCCCEEEEE
Confidence 35567777877655 455568999999999999987654322 2223334322211 121 1 3689999987
Q ss_pred cc-cc------------------eEEEEecCChhhhhHHHHhe
Q psy3407 613 FN-PY------------------SFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 613 ~~-~~------------------~~~~~~~~~~~~~~~~~~~~ 636 (749)
.. |- .-.+|.|.++.++-+|++.|
T Consensus 81 ~~~p~~~~~~~~~~~~~~~~~~~r~~~l~A~s~~e~~~Wi~al 123 (134)
T 2y7b_A 81 TVRPQREDDRETLVSQCRDTLCVTKNWLSADTKEERDLWMQKL 123 (134)
T ss_dssp EEEECCTTCCCCSSEEEETTEEEEEEEEECSSHHHHHHHHHHH
T ss_pred ecCCCcccccccccccccCCCceEEEEEECCCHHHHHHHHHHH
Confidence 63 32 12456666677777776654
No 53
>1unq_A RAC-alpha serine/threonine kinase; transferase, pleckstrin homology domain, PKB, AKT, phosphoinositide, serine/threonine-protein kinase; HET: 4IP; 0.98A {Homo sapiens} SCOP: b.55.1.1 PDB: 1h10_A* 1unr_A 2uzs_A* 2uzr_A 2uvm_A* 1unp_A 2x18_A* 1p6s_A
Probab=87.86 E-value=0.44 Score=42.37 Aligned_cols=90 Identities=14% Similarity=0.233 Sum_probs=53.1
Q ss_pred ccccccCceeEEecCCCCCCcceeeec-cceEEeecCCCCCC-----ceeeEEeccc-hhhhcCCCceeEEEec---ccc
Q psy3407 547 DQVFRSGNLMYKINDKSAWTPGFVNLQ-NGILTVKEAPNSPK-----NISVIQCHSF-SQVYDKSRPYTFKVNF---NPY 616 (749)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~---~~~ 616 (749)
..+.++|-|.-+=.....|..-|+-|. +|.|..-..+...+ ++..+..... ....+..+|+.|+|.. .+.
T Consensus 6 ~~~~~~G~L~K~g~~~k~WkkRwfvL~~~~~L~yy~~~~~~~~~g~i~L~~~~~~~~~~~~~~~~~~~~F~I~~~~~~~~ 85 (125)
T 1unq_A 6 VAIVKEGWLHKRGEYIKTWRPRYFLLKNDGTFIGYKERPQDVDQREAPLNNFSVAQCQLMKTERPRPNTFIIRCLQWTTV 85 (125)
T ss_dssp GCEEEEEEEEEECSSSCCEEEEEEEEETTSEEEEESSCCCSHHHHTSCSEEEECTTCEEEEECSSSTTEEEEEEEETTEE
T ss_pred CCeeEEeeEEeccCCccCccCcEEEEecCCEEEEEeCCCCCCCCceeEccceeEEeeeecccccCCCCEEEEEecCCCCc
Confidence 345666766544334567999888898 67776444333321 2222211110 0113567899999975 344
Q ss_pred eEEEEecCChhhhhHHHHhe
Q psy3407 617 SFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 617 ~~~~~~~~~~~~~~~~~~~~ 636 (749)
.-..|.|.++.++-+|++.|
T Consensus 86 ~~~~~~a~s~~e~~~Wi~al 105 (125)
T 1unq_A 86 IERTFHVETPEEREEWTTAI 105 (125)
T ss_dssp EEEEEECSSHHHHHHHHHHH
T ss_pred eeEEEEeCCHHHHHHHHHHH
Confidence 44456788888888888765
No 54
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH domain, signaling protein; 2.60A {Mus musculus} SCOP: b.55.1.1 PDB: 2otx_A
Probab=87.73 E-value=1.4 Score=43.90 Aligned_cols=160 Identities=14% Similarity=0.227 Sum_probs=86.0
Q ss_pred hhhhhccceEEee--eeccccCCccchhhhhHHHHHHHHhhhc-cccccccCeEEEeehhhhhhhcccc---c-------
Q psy3407 477 AVSTLISNVEIMC--LKQHYTPSSVSAKQRHTLMRLLEHISSQ-TQYFNKCDEIILYSWSWIEQFSDIS---R------- 543 (749)
Q Consensus 477 ~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~------- 543 (749)
-+.+||+.+|..- .-++=.-|..+.++|..|.+-++.+.+. .|-|.. ++....+-.|...+++-+ .
T Consensus 5 ~~~~l~~~~~~~~~~~l~~e~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~sd~~s 83 (211)
T 1u5e_A 5 EIRNLLADVETFVADTLKGENLSKKAKEKRESLIKKIKDVKSVYLQEFQD-KGDAEDGDEYDDPFAGPADTISLASERYD 83 (211)
T ss_dssp HHHHHHHHHHHHHHTTTTTCBCCHHHHHHHHHHHHHHHHHGGGGTGGGC-------------------------------
T ss_pred HHHHHHHHHHHHHHHhhcchhcCHHHHHHHHHHHHHHHHHHHhccccccC-CCccccccCccCCccCCCccccccccccc
Confidence 3455666555432 0122223444556677776666655443 455653 233444445555443332 1
Q ss_pred -----------------cccccccccCceeEEecC----CCCCCcceeeeccceEEeecCCCCCCceeeEEeccchhhh-
Q psy3407 544 -----------------TGHDQVFRSGNLMYKIND----KSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVY- 601 (749)
Q Consensus 544 -----------------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 601 (749)
.....+.++|-|+-+-.. ...|..=|+-|.++.|..-..+...+-..+|.-.....+.
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~v~k~G~L~Kkg~~~~~~~k~WkkRwfVL~~~~L~Yyk~~~~~~p~g~I~L~~~~~v~~ 163 (211)
T 1u5e_A 84 KDDDGPSDGNQFPPIAAQDLPFVIKAGYLEKRRKDHSFLGFEWQKRWCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMN 163 (211)
T ss_dssp -----------CCCCCGGGCSSEEEEEEEEEEEHHHHTTTCCCEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEC
T ss_pred cccccCCCCcccCccChhhcCCccEEEEEEEECCCCCcCCCCcEeEEEEEECCEEEEEcCCCCccceEEEEeCCcEEEEc
Confidence 111347788877655442 2489999999999999988777765555555544443332
Q ss_pred -----cCCCceeEEEecccceEEEEecCChhhhhHHHHhee
Q psy3407 602 -----DKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 602 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
+..+|+.|.|....-.-..|.|.++.++-+|++.|.
T Consensus 164 ~~~~~~~~k~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~aL~ 204 (211)
T 1u5e_A 164 NTLRKDGKKDCCFEICAPDKRIYQFTAASPKDAEEWVQQLK 204 (211)
T ss_dssp GGGCSSTTGGGEEEEECSSSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCccccCCCCCEEEEEcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 456789998876443445567788888888887653
No 55
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=87.39 E-value=0.69 Score=48.10 Aligned_cols=57 Identities=14% Similarity=0.202 Sum_probs=44.6
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCC
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIe 169 (749)
.+|...+++.|++|+.++.|++|..+ +++++||.+.+ .+...+++| +.||.|.|+-.
T Consensus 106 ~~L~~~~~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~-~~~~~~~~a-~~vV~A~G~~s 162 (397)
T 3cgv_A 106 KHLAALAAKAGADVWVKSPALGVIKE-NGKVAGAKIRH-NNEIVDVRA-KMVIAADGFES 162 (397)
T ss_dssp HHHHHHHHHHTCEEESSCCEEEEEEE-TTEEEEEEEEE-TTEEEEEEE-EEEEECCCTTC
T ss_pred HHHHHHHHhCCCEEEECCEEEEEEEe-CCEEEEEEEEE-CCeEEEEEc-CEEEECCCcch
Confidence 34444344568999999999999988 67899999976 556678889 89999998643
No 56
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=87.30 E-value=1.3 Score=45.20 Aligned_cols=52 Identities=13% Similarity=0.079 Sum_probs=40.8
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec----------CCeEEEEEeccEEEEccCCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINS----------QGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~----------~G~~~~V~ArKeVILAAGAI 168 (749)
+.++.|+++++++.|++|+.+ +++++||.+.+. .|+...++| +.||+|+|+.
T Consensus 129 ~~~~~gv~i~~~~~V~~i~~~-~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~a-d~VV~AtG~~ 190 (284)
T 1rp0_A 129 LLARPNVKLFNAVAAEDLIVK-GNRVGGVVTNWALVAQNHHTQSCMDPNVMEA-KIVVSSCGHD 190 (284)
T ss_dssp HHTSTTEEEEETEEEEEEEEE-TTEEEEEEEEEHHHHTCTTTSSCCCCEEEEE-EEEEECCCSS
T ss_pred HHhcCCCEEEcCcEEEEEEec-CCeEEEEEEeccccccccCccccCceEEEEC-CEEEECCCCc
Confidence 344579999999999999987 568999988631 144567888 9999999964
No 57
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=87.29 E-value=0.81 Score=49.61 Aligned_cols=57 Identities=16% Similarity=0.096 Sum_probs=45.2
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIe 169 (749)
.|...+.+.|++|+.++.|++|..+ +++++||++.+. +|+..+++| +.||.|.|+-.
T Consensus 105 ~L~~~a~~~gv~i~~~~~v~~i~~~-~~~v~gv~~~~~~~G~~~~~~a-d~VV~AdG~~s 162 (453)
T 3atr_A 105 RVLKEAQDRGVEIWDLTTAMKPIFE-DGYVKGAVLFNRRTNEELTVYS-KVVVEATGYSR 162 (453)
T ss_dssp HHHHHHHHTTCEEESSEEEEEEEEE-TTEEEEEEEEETTTTEEEEEEC-SEEEECCGGGC
T ss_pred HHHHHHHHcCCEEEeCcEEEEEEEE-CCEEEEEEEEEcCCCceEEEEc-CEEEECcCCch
Confidence 3433334478999999999999887 578999999865 677778899 99999999743
No 58
>2d9x_A Oxysterol binding protein-related protein 11; PH domain, OSBP-related protein 11, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.64 E-value=1 Score=39.98 Aligned_cols=92 Identities=22% Similarity=0.208 Sum_probs=47.9
Q ss_pred ccccccccCceeEEecCCCCCCcceeeec--cceEEeecCCCCC--CceeeEEeccchhhhcCCCceeEEEecccceEEE
Q psy3407 545 GHDQVFRSGNLMYKINDKSAWTPGFVNLQ--NGILTVKEAPNSP--KNISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVL 620 (749)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 620 (749)
|.+.+..+|-|+-+=+....|..-|+-|. +|.|..-..+... +-..+|.-....-..+..+++.|.|....-.-..
T Consensus 4 ~~~~~~~~G~L~K~~~~~~~Wk~R~fvL~~~~~~L~Yyk~~~~~~~~~~g~I~L~~~~v~~~~~~~~~F~i~~~~~r~~~ 83 (120)
T 2d9x_A 4 GSSGENVYGYLMKYTNLVTGWQYRFFVLNNEAGLLEYFVNEQSRNQKPRGTLQLAGAVISPSDEDSHTFTVNAASGEQYK 83 (120)
T ss_dssp CCSCCCCEEEEEEEEETTTEEEEEEEEECTTTCEEEEESSGGGSSSCCSEEEECTTCCEECCSSSSSCEEECCSSSCCEE
T ss_pred CCCCCcEEEEEEecCCCCCCceEEEEEEECCCCEEEEEecCcccCCCccceEEcceEEEEecCCCCCEEEEEcCCCCEEE
Confidence 45556667776655555567888888786 5777765444322 1122333222221223456677776543212233
Q ss_pred EecCChhhhhHHHHhe
Q psy3407 621 FAAPDESQLFDWLQDI 636 (749)
Q Consensus 621 ~~~~~~~~~~~~~~~~ 636 (749)
|.|.++.+.-+|++.|
T Consensus 84 l~a~s~~e~~~Wi~al 99 (120)
T 2d9x_A 84 LRATDAKERQHWVSRL 99 (120)
T ss_dssp ECCSSHHHHHHHHHHH
T ss_pred EECCCHHHHHHHHHHH
Confidence 4555555555555544
No 59
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus} SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A* 1u29_A* 1u27_A*
Probab=86.43 E-value=1.8 Score=37.99 Aligned_cols=65 Identities=18% Similarity=0.242 Sum_probs=41.3
Q ss_pred ccccCceeEEecCCCCCCcceeeeccceEEeecCCCCCCceeeEEeccc--hhhhcCCCceeEEEec
Q psy3407 549 VFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSF--SQVYDKSRPYTFKVNF 613 (749)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 613 (749)
+.++|-|+-+-.....|..-|.-|.++.|..-+.+...+-..+|.-... ..+-+..+|+.|.+..
T Consensus 5 ~~~~G~L~K~g~~~~~Wk~R~fvL~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~f~i~~ 71 (127)
T 1fgy_A 5 PDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRKPNCFELYN 71 (127)
T ss_dssp CSEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECCSSCSSEEEEEC
T ss_pred CceEeEEEEECCCCCCeEEEEEEEECCEEEEeCCCCCCCcceEEECCceEEEEccCCCCCceEEEec
Confidence 3445555444334567999999999999988777765555455543332 2334567888888754
No 60
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1 GTPase-activating protein...; PH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=86.07 E-value=1.7 Score=38.25 Aligned_cols=87 Identities=20% Similarity=0.392 Sum_probs=54.0
Q ss_pred ccccccCceeEEecCC-CCCCcceeeeccceEEeecCCCCCC--ceeeEEeccchhhhcCCCceeEEEecccceEEEEec
Q psy3407 547 DQVFRSGNLMYKINDK-SAWTPGFVNLQNGILTVKEAPNSPK--NISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAA 623 (749)
Q Consensus 547 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 623 (749)
.++.++|-|+-+-... ..|..-|.-|.++.|..-..+.... .|.++.|. .. .+..+++.|.|. .|-.-.+|.|
T Consensus 8 ~~~~~~G~L~K~~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~i~l~~~~--v~-~~~~~~~~F~I~-~~~r~~~l~a 83 (114)
T 2da0_A 8 YGSEKKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNRQPAKLNLLTCQ--VK-PNAEDKKSFDLI-SHNRTYHFQA 83 (114)
T ss_dssp CCSCEEEEEEEECSSSCCCEEEEEEEEETTEEEECCSSCCSCCEEEETTTSE--EE-ECSSSSSCEEEE-ETTEEEEEEC
T ss_pred CCccEEEEEEEeCCCCCCCceeEEEEEeCCEEEEEcCCCCCCCCEEEeeeeE--EE-ECCCCCCEEEEE-cCCcEEEEEc
Confidence 3556777766554433 6899999999999988755544322 22222332 11 344567788887 3455556777
Q ss_pred CChhhhhHHHHhee
Q psy3407 624 PDESQLFDWLQDIM 637 (749)
Q Consensus 624 ~~~~~~~~~~~~~~ 637 (749)
.++.++-+|++.|.
T Consensus 84 ~s~~e~~~Wi~al~ 97 (114)
T 2da0_A 84 EDEQDYVAWISVLT 97 (114)
T ss_dssp SSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 78888888877653
No 61
>1x1g_A Pleckstrin 2; PH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=85.75 E-value=1.4 Score=39.14 Aligned_cols=91 Identities=15% Similarity=0.257 Sum_probs=54.4
Q ss_pred ccccccCceeEEecCCCCCCcceeeec--cceEEeecCC-CCCCceeeEEecc--chhhhcC---------CCceeEEEe
Q psy3407 547 DQVFRSGNLMYKINDKSAWTPGFVNLQ--NGILTVKEAP-NSPKNISVIQCHS--FSQVYDK---------SRPYTFKVN 612 (749)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~-~~~~~~~~~~~~~--~~~~~~~---------~~~~~~~~~ 612 (749)
..+.++|-|.-+=.....|..=|+-|. ++.|...+.+ +..+-..+|.-.. ...+-+. .+|+.|+|.
T Consensus 16 ~~~~~~G~L~K~g~~~~~Wk~R~fvL~~d~~~L~yy~~~~~~~~~~g~i~L~~~~v~~~~~~~~p~~~~~~~~~~~F~I~ 95 (129)
T 1x1g_A 16 GTVVKQGYLAKQGHKRKNWKVRRFVLRKDPAFLHYYDPSKEENRPVGGFSLRGSLVSALEDNGVPTGVKGNVQGNLFKVI 95 (129)
T ss_dssp SEEEEEEEEEEECSSSSSEEEEEEEEEESSCEEEEECSSSCCSSCSCCEESTTCCCEECCSSSSCSSCSSCCCSSCEEEC
T ss_pred CCEEEEEEEEEECCCCCCeeeEEEEEeCCCCeEEEeCCCCcCCccceEEECcCCEEEEeCCCCCcccccCCCCCceEEEE
Confidence 456677766655444667888888888 3677776665 4444444443222 1111111 278888887
Q ss_pred cccceEEEEecCChhhhhHHHHhee
Q psy3407 613 FNPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
...-.-.+|.|+++.+.-+|++.|.
T Consensus 96 ~~~~r~~~l~a~s~~e~~~Wi~al~ 120 (129)
T 1x1g_A 96 TKDDTHYYIQASSKAERAEWIEAIK 120 (129)
T ss_dssp CTTCCCEEECCSSHHHHHHHHHHHH
T ss_pred cCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 6543434567777778888877653
No 62
>3f8d_A Thioredoxin reductase (TRXB-3); redox protein, nucleotide binding, FAD, flavoprotein, oxidoreductase; HET: FAD; 1.40A {Sulfolobus solfataricus} PDB: 3f8p_A* 3f8r_A*
Probab=84.89 E-value=3.4 Score=41.20 Aligned_cols=66 Identities=24% Similarity=0.251 Sum_probs=52.2
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
++..+.++.|+++++++.|.+|.-+ +++.+|++.+ .+|+...+.+ ..||+|.|..-...+|..+|+
T Consensus 195 ~~~~~~~~~gv~~~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~~~~-D~vv~a~G~~p~~~~~~~~g~ 261 (323)
T 3f8d_A 195 YVETVKKKPNVEFVLNSVVKEIKGD--KVVKQVVVENLKTGEIKELNV-NGVFIEIGFDPPTDFAKSNGI 261 (323)
T ss_dssp HHHHHHTCTTEEEECSEEEEEEEES--SSEEEEEEEETTTCCEEEEEC-SEEEECCCEECCHHHHHHTTC
T ss_pred HHHHHHhCCCcEEEeCCEEEEEecc--CceeEEEEEECCCCceEEEEc-CEEEEEECCCCChhHHhhcCe
Confidence 4444555669999999999999865 5788899876 3577777888 899999998777678777765
No 63
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=84.78 E-value=1 Score=46.83 Aligned_cols=58 Identities=22% Similarity=0.239 Sum_probs=44.2
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
..+++.+++|+.++.|++|..+ +++++||+.. +| .++| +.||+|+|+- |+.|+...|+
T Consensus 157 ~~~~~~Gv~i~~~~~v~~i~~~-~~~v~gv~~~--~g---~i~a-~~VV~A~G~~-s~~l~~~~g~ 214 (382)
T 1y56_B 157 VKAKEYGAKLLEYTEVKGFLIE-NNEIKGVKTN--KG---IIKT-GIVVNATNAW-ANLINAMAGI 214 (382)
T ss_dssp HHHHHTTCEEECSCCEEEEEES-SSBEEEEEET--TE---EEEC-SEEEECCGGG-HHHHHHHHTC
T ss_pred HHHHHCCCEEECCceEEEEEEE-CCEEEEEEEC--Cc---EEEC-CEEEECcchh-HHHHHHHcCC
Confidence 3344568999999999999987 5678888752 44 5888 8899999976 6667666654
No 64
>1v5u_A SBF1, SET binding factor 1; MTMR5, the pleckstrin homology domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: b.55.1.1
Probab=84.46 E-value=2.1 Score=37.13 Aligned_cols=89 Identities=18% Similarity=0.157 Sum_probs=50.0
Q ss_pred cccccCceeEEecCCCCCCcceeeec--cceEEeecCCCCCCceeeEEeccchhhh----------cCCCceeEEEeccc
Q psy3407 548 QVFRSGNLMYKINDKSAWTPGFVNLQ--NGILTVKEAPNSPKNISVIQCHSFSQVY----------DKSRPYTFKVNFNP 615 (749)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~ 615 (749)
.+..+|-|.-+=.....|..-|.-|. ++.|..-+.+...+-..+|.-.....|. +..+++.|.+.- +
T Consensus 7 ~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~~v~~~~~~~~~~~~~~~~~~F~i~~-~ 85 (117)
T 1v5u_A 7 GRSYEGILYKKGAFMKPWKARWFVLDKTKHQLRYYDHRMDTECKGVIDLAEVEAVAPGTPTIGAPKTVDEKAFFDVKT-T 85 (117)
T ss_dssp SSSEEEEEEECCCSSSCCEEEEEEEETTTTEEEEESSSSCSSCCCEEEGGGEEEEECCCCCTTSCSSSCTTTCEEEEE-S
T ss_pred CccEEEEEEecCCCCCCceeeEEEEECCCCEEEEeecCCCCccceEEEccCcEEEeecCccccccccCCCCeEEEEEC-C
Confidence 34445554433333467888888887 7777776555443333333322222221 234457888843 4
Q ss_pred ceEEEEecCChhhhhHHHHhee
Q psy3407 616 YSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 616 ~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
-.-..|.|+++.++-+|++.|-
T Consensus 86 ~r~~~l~a~s~~e~~~Wi~al~ 107 (117)
T 1v5u_A 86 RRVYNFCAQDVPSAQQWVDRIQ 107 (117)
T ss_dssp SCEEEEECSSHHHHHHHHHHHH
T ss_pred CceEEEECCCHHHHHHHHHHHH
Confidence 4444556778888888877664
No 65
>1x05_A Pleckstrin; PH domain, structural genomics, NPPSFA, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.55.1.1 PDB: 1xx0_A
Probab=84.16 E-value=2 Score=38.12 Aligned_cols=93 Identities=12% Similarity=0.226 Sum_probs=52.4
Q ss_pred ccccccccCceeEEecCCCCCCcceeeeccc--eEEeecCCCCCCceeeEEeccc--hhhhcC------CCceeEEEecc
Q psy3407 545 GHDQVFRSGNLMYKINDKSAWTPGFVNLQNG--ILTVKEAPNSPKNISVIQCHSF--SQVYDK------SRPYTFKVNFN 614 (749)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~~------~~~~~~~~~~~ 614 (749)
....+.++|-|.-+=.....|..=|+-|.++ .|..-+.++..+-..+|.-... ..+.+. .+++.|.|...
T Consensus 14 ~~~~~~~~G~L~K~g~~~~~Wk~R~fvL~~~~~~L~yy~~~~~~~~~g~i~L~~~~v~~~~~~~~~~~~~~~~~F~i~~~ 93 (129)
T 1x05_A 14 FRGVIIKQGCLLKQGHRRKNWKVRKFILREDPAYLHYYDPAGAEDPLGAIHLRGCVVTSVESNSNGRKSEEENLFEIITA 93 (129)
T ss_dssp TCSEEEEEEEEEECCSSCCCCEEEEEEEEETTTEEEEECSSCCSSCSEEEECTTCEEEECCCCCCSSSCSSCSEEEEECT
T ss_pred ccCCceEEEEEEecCCCCCCCeeEEEEEeCCCCEEEEECCCCCCcceeEEEccCCEEEEccCCccccccCCCeEEEEEcC
Confidence 3445566666554433445688888878764 6666555544333333332211 111111 27888888765
Q ss_pred cceEEEEecCChhhhhHHHHhee
Q psy3407 615 PYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 615 ~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
.-.-..|.|.++.++-+|++.|.
T Consensus 94 ~~~~~~l~a~s~~e~~~Wi~al~ 116 (129)
T 1x05_A 94 DEVHYFLQAATPKERTEWIKAIQ 116 (129)
T ss_dssp TCCCCEEECSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCHHHHHHHHHHHH
Confidence 43323567777888888877654
No 66
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein, pleckstrin homology domain, cellular signaling, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=83.55 E-value=2.1 Score=40.48 Aligned_cols=95 Identities=19% Similarity=0.254 Sum_probs=64.0
Q ss_pred cccccccccccCceeEEecCCCC-CCcceeeeccce-------------EEeecCCCCCCceeeEEeccchhhhcCC---
Q psy3407 542 SRTGHDQVFRSGNLMYKINDKSA-WTPGFVNLQNGI-------------LTVKEAPNSPKNISVIQCHSFSQVYDKS--- 604 (749)
Q Consensus 542 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 604 (749)
++..+-.+-|.|.|+|-.-|.-+ |.-+=...|..- |..-..|.+.|-.+-|.|-....|-.-.
T Consensus 11 ~~~~~~e~~kEG~l~~~~~~~~~~~~~~~~~W~k~RLvL~k~g~G~~y~LEfy~PPkssKpK~~i~cs~I~EVR~tt~LE 90 (136)
T 1v5m_A 11 AKVELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPKASRPKVSIPLSAIIEVRTTMPLE 90 (136)
T ss_dssp CCCCSCSCCEEEEEEEEECSCCCSSSCCSCCCEEEEEEEEECSSSCCEEEEEESSTTSSSCSSCEETTTCCBCCCCCCSS
T ss_pred cccccceeeeeeeeeeecccccccccCcccchhheeeEEEEccCCCceEEEEecCCcccCCccccchhhhhhhhhccccc
Confidence 45566778899999999887664 443333333333 4444557778888889999888775433
Q ss_pred ---CceeEEEecccceEEEEecCChhhhhHHHHhe
Q psy3407 605 ---RPYTFKVNFNPYSFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 605 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 636 (749)
+-+||-+.-.--.-.+|.|-|+.|+-+|+++|
T Consensus 91 mPD~~nTFVlK~~n~~eyi~ea~d~~q~~sWla~I 125 (136)
T 1v5m_A 91 MPEKDNTFVLKVENGAEYILETIDSLQKHSWVADI 125 (136)
T ss_dssp SCCCTTEECCBCTTSCBEEEECSSHHHHHHHHHHH
T ss_pred cCCccceEEEEecCCcEEEEEcCCHHHHHHHHHHH
Confidence 34677655333334567888999999999887
No 67
>2rsg_A Collagen type IV alpha-3-binding protein; pleckstrin homology, lipid transport; NMR {Homo sapiens}
Probab=83.50 E-value=2.3 Score=35.78 Aligned_cols=85 Identities=19% Similarity=0.211 Sum_probs=54.4
Q ss_pred ccCceeEEecCCCCCCcceeeeccceEEeecCCCC--CCceeeEEeccchhhhcCCCceeEEEecccceEEEEecCChhh
Q psy3407 551 RSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNS--PKNISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQ 628 (749)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (749)
++|-|+=+-+--..|..-|.-|.++.|.--..+.. ++.+.+|....-..+-+..+++.|.+.-+--. ..|.|.++.+
T Consensus 3 k~G~L~K~g~~~k~WkkR~FvL~~~~L~Yy~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~F~i~~~~r~-~~l~A~s~~e 81 (94)
T 2rsg_A 3 RCGVLSKWTNYIHGWQDRWVVLKNNALSYYKSEDETEYGCRGSICLSKAVITPHDFDECRFDISVNDSV-WYLRAQDPDH 81 (94)
T ss_dssp EEEEEEEESSSTTCEEEEEEEEETTEEEEESSTTGGGTCCSEEEETTTCEEEECSSCSSEEEEEETTEE-EEEECCSSCC
T ss_pred EEEEEEEeCCCCCCceEEEEEEECCEEEEEEecccccccceeeEecceeeeecCcccceeEEEEeCCeE-EEEECCCHHH
Confidence 45554333333456888888899998886443332 33445565555555567778888888654444 4567778888
Q ss_pred hhHHHHhe
Q psy3407 629 LFDWLQDI 636 (749)
Q Consensus 629 ~~~~~~~~ 636 (749)
.-+|++-|
T Consensus 82 ~~~Wi~aL 89 (94)
T 2rsg_A 82 RQQWIDAI 89 (94)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 88888754
No 68
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=82.86 E-value=1.2 Score=48.31 Aligned_cols=55 Identities=22% Similarity=0.220 Sum_probs=42.8
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
|...+++.|++|++++.|++|+.+ ++++.+|+.. +|+ .++| +.||+|+|+...|.
T Consensus 140 L~~~~~~~GV~i~~~~~V~~i~~~-~~~v~~V~~~--~G~--~i~A-d~VVlAtGg~s~~~ 194 (447)
T 2i0z_A 140 LLTRLKDLGVKIRTNTPVETIEYE-NGQTKAVILQ--TGE--VLET-NHVVIAVGGKSVPQ 194 (447)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEET--TCC--EEEC-SCEEECCCCSSSGG
T ss_pred HHHHHHHCCCEEEeCcEEEEEEec-CCcEEEEEEC--CCC--EEEC-CEEEECCCCCcCCC
Confidence 333344578999999999999987 4677888763 564 5788 89999999998774
No 69
>3itj_A Thioredoxin reductase 1; disulfide B flavoprotein, NADP, oxidoreductase, phosphoprotein, redox-A center; HET: FAD CIT; 2.40A {Saccharomyces cerevisiae} PDB: 3d8x_A*
Probab=82.71 E-value=2.6 Score=42.42 Aligned_cols=59 Identities=15% Similarity=0.156 Sum_probs=46.9
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
..+..|+++++++.|.+|.-+ ++++++|++.+. +|+..++.+ ..||+|.|..-.+.+|.
T Consensus 218 l~~~~gv~i~~~~~v~~i~~~-~~~~~~v~~~~~~~g~~~~i~~-D~vi~a~G~~p~~~~~~ 277 (338)
T 3itj_A 218 AEKNEKIEILYNTVALEAKGD-GKLLNALRIKNTKKNEETDLPV-SGLFYAIGHTPATKIVA 277 (338)
T ss_dssp HHHCTTEEEECSEEEEEEEES-SSSEEEEEEEETTTTEEEEEEC-SEEEECSCEEECCGGGB
T ss_pred HHhcCCeEEeecceeEEEEcc-cCcEEEEEEEECCCCceEEEEe-CEEEEEeCCCCChhHhh
Confidence 334569999999999999887 567999999873 566678888 89999999766655553
No 70
>3rcp_A Pleckstrin homology domain-containing family A ME; FAPP1, PH domain, lipid-binding, membrane, membrane protein; 1.90A {Homo sapiens} PDB: 2kcj_A
Probab=82.50 E-value=3.7 Score=34.85 Aligned_cols=76 Identities=14% Similarity=0.249 Sum_probs=42.8
Q ss_pred CCCCCcceeeeccceEEeecCCCCC--CceeeEEeccchhhhcCCCceeEEEecccceEEEEecCChhhhhHHHHhee
Q psy3407 562 KSAWTPGFVNLQNGILTVKEAPNSP--KNISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
...|..-|.-|.++.|..-+.+... +-..+|.-...+-.-+...++.|.+....-.-..|.|+++.+.-+|++.|-
T Consensus 12 ~k~Wk~R~fvL~~~~L~Yy~~~~~~~~~~~g~i~L~~~~v~~~~~~~~~F~i~~~~~r~~~l~a~s~~e~~~Wi~al~ 89 (103)
T 3rcp_A 12 LTGWQPRWFVLDNGILSYYDSQDDVCKGSKGSIKMAVCEIKVHSADNTRMELIIPGEQHFYMKAVNAAERQRWLVALG 89 (103)
T ss_dssp TTCEEEEEEEEETTEEEEESSCC---CCCSCEEEGGGCEEECCTTCSSEEEEEETTTEEEEEECSSHHHHHHHHHHHH
T ss_pred CCCeeceEEEEECCEEEEEecCCcccCCcccEEEeeeeEEEEcCCCCceEEEEeCCCCEEEEECCCHHHHHHHHHHHH
Confidence 3467777777777777766555421 112233322222222344577777765434455667777777777777654
No 71
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=82.41 E-value=0.88 Score=48.81 Aligned_cols=57 Identities=18% Similarity=0.231 Sum_probs=42.3
Q ss_pred hccCCCeEEEcccEEEEEEeC--------------CCCcEEEEEEEecCCeEEEE--EeccEEEEccCCCCChHHHhhcC
Q psy3407 115 AKFRENLIILKNTEVIKILID--------------SKLKAYGVEYINSQGKICHV--NSTREVILSAGAVGSPQLLMLSG 178 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d--------------~ggrAtGV~y~d~~G~~~~V--~ArKeVILAAGAIeTPrLLL~SG 178 (749)
.+++.+++|++++.|++|..+ +++++++|+. .+| ++ +| +.||+|+|+- |++|+-..|
T Consensus 190 ~~~~~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t--~~g---~i~~~A-d~VV~AtG~~-s~~l~~~~g 262 (448)
T 3axb_A 190 RASGAGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVL--SDG---TRVEVG-EKLVVAAGVW-SNRLLNPLG 262 (448)
T ss_dssp HHHHTTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEE--TTS---CEEEEE-EEEEECCGGG-HHHHHGGGT
T ss_pred HHHhCCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEe--CCC---EEeecC-CEEEECCCcC-HHHHHHHcC
Confidence 344568999999999999881 2456777764 255 46 78 8899999986 677776554
No 72
>2w2x_D 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma-2; hydrolase, phospholipase C, phosphoinositides, RHO gtpases, RAC, SH2 domain; HET: GSP; 2.30A {Homo sapiens} PDB: 2w2w_A* 2w2x_C* 2k2j_A
Probab=81.61 E-value=1.2 Score=40.14 Aligned_cols=89 Identities=18% Similarity=0.341 Sum_probs=51.6
Q ss_pred ccccCceeEEecCCCCCCcceeeeccceEEeecCCC------CC---CceeeEEecc--chhhhc--CCCceeEEEeccc
Q psy3407 549 VFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPN------SP---KNISVIQCHS--FSQVYD--KSRPYTFKVNFNP 615 (749)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~---~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~ 615 (749)
+.+.|-|.-+=.-...|.+-|.-|.++.|..-+.+. +| +-..+|.-.+ ...+.+ ..+||.|++.+.-
T Consensus 12 ~~k~G~L~K~g~~~k~Wk~RwfVL~~~~L~yyk~~~~~~~e~~plg~~~~G~I~L~~~~v~~~~~~~~~k~~~F~I~~~~ 91 (124)
T 2w2x_D 12 HKQQGELYMWDSIDQKWTRHFCAIADAKLSFSDDIEQTMEEDNPLGSLCRGILDLNTYNVVKAPQGKNQKSFVFILEPKQ 91 (124)
T ss_dssp -CCEEEEEEEETTTTEEEEEEEEEETTEEEEEEEHHHHHHCSSCCCCSCSEEEEGGGEEEEECTTCBTTBSEEEEEEECC
T ss_pred cceeEEEEEECCCCCCceEeEEEEECCEEEEEcccccccccccccCCccccEEECCCCEEEEccCCcCCCCEEEEEECCC
Confidence 445555532222345688888888888787765431 11 1122332222 122333 5689999997632
Q ss_pred --ceEEEEecCChhhhhHHHHhee
Q psy3407 616 --YSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 616 --~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
-....|+|+.+.++.+|++.|-
T Consensus 92 ~~~~~~~~~A~s~ee~~~Wi~ai~ 115 (124)
T 2w2x_D 92 QGDPPVEFATDKVEELFEWFQSIR 115 (124)
T ss_dssp --CCCEEEEECCCHHHHHHHHHHH
T ss_pred CCCceEEEEECCHHHHHHHHHHHH
Confidence 2344678888888888888764
No 73
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein; HET: FAD; 2.35A {Thermoplasma acidophilum}
Probab=81.55 E-value=1.7 Score=44.15 Aligned_cols=61 Identities=25% Similarity=0.372 Sum_probs=48.2
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
.+.|+++++++.|.+|.-+ ++++.+|.+.+. +|+...+.+ +.||+|.|..-.+.+|..+|+
T Consensus 201 ~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~-D~vi~a~G~~p~~~~l~~~gl 262 (319)
T 3cty_A 201 KKRNIPYIMNAQVTEIVGD-GKKVTGVKYKDRTTGEEKLIET-DGVFIYVGLIPQTSFLKDSGV 262 (319)
T ss_dssp HHTTCCEECSEEEEEEEES-SSSEEEEEEEETTTCCEEEECC-SEEEECCCEEECCGGGTTSCC
T ss_pred hcCCcEEEcCCeEEEEecC-CceEEEEEEEEcCCCceEEEec-CEEEEeeCCccChHHHhhccc
Confidence 3568999999999999876 467889999753 677677888 899999997766666665554
No 74
>3r9u_A Thioredoxin reductase; structural genomics, center for structural genomics of infec diseases, csgid, thioredoxin-disulfide reductase, FAD; HET: FAD; 2.36A {Campylobacter jejuni}
Probab=81.18 E-value=2.2 Score=42.58 Aligned_cols=64 Identities=20% Similarity=0.230 Sum_probs=49.5
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhh
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLML 176 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~ 176 (749)
++....++.++++++++.|.+|.-+ ++++++|++...+|+..++.+ ..||+|.|..-.+.+|..
T Consensus 188 ~~~~~~~~~gv~~~~~~~v~~i~~~-~~~~~~v~~~~~~g~~~~~~~-D~vv~a~G~~p~~~~~~~ 251 (315)
T 3r9u_A 188 TVEKVKKNEKIELITSASVDEVYGD-KMGVAGVKVKLKDGSIRDLNV-PGIFTFVGLNVRNEILKQ 251 (315)
T ss_dssp HHHHHHHCTTEEEECSCEEEEEEEE-TTEEEEEEEECTTSCEEEECC-SCEEECSCEEECCGGGBC
T ss_pred HHHHHHhcCCeEEEeCcEEEEEEcC-CCcEEEEEEEcCCCCeEEeec-CeEEEEEcCCCCchhhhc
Confidence 3444446789999999999999876 568999998755787778888 899999997655555443
No 75
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=80.90 E-value=1.2 Score=46.49 Aligned_cols=58 Identities=24% Similarity=0.321 Sum_probs=43.2
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
...++.|++|+.++.|++|..+ ++++++|+.. +| .++| +.||+|+|+. ++.|+...|+
T Consensus 182 ~~~~~~g~~i~~~~~v~~i~~~-~~~~~~v~~~--~g---~~~a-~~vV~a~G~~-s~~l~~~~g~ 239 (405)
T 2gag_B 182 RKANEMGVDIIQNCEVTGFIKD-GEKVTGVKTT--RG---TIHA-GKVALAGAGH-SSVLAEMAGF 239 (405)
T ss_dssp HHHHHTTCEEECSCCEEEEEES-SSBEEEEEET--TC---CEEE-EEEEECCGGG-HHHHHHHHTC
T ss_pred HHHHHCCCEEEcCCeEEEEEEe-CCEEEEEEeC--Cc---eEEC-CEEEECCchh-HHHHHHHcCC
Confidence 3344568999999999999987 5678888652 45 5778 8899999974 5566665553
No 76
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=80.89 E-value=3.2 Score=42.87 Aligned_cols=66 Identities=18% Similarity=0.125 Sum_probs=48.4
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
|....++.++++++++.|.+|.-+ ++++.+|.+...+|+...+.+ +.||+|.|..-...+|..+|+
T Consensus 208 l~~~~~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~g~~~~i~~-D~vi~a~G~~p~~~~l~~~~~ 273 (360)
T 3ab1_A 208 VERARANGTIDVYLETEVASIEES-NGVLTRVHLRSSDGSKWTVEA-DRLLILIGFKSNLGPLARWDL 273 (360)
T ss_dssp SHHHHHHTSEEEESSEEEEEEEEE-TTEEEEEEEEETTCCEEEEEC-SEEEECCCBCCSCGGGGGSSC
T ss_pred HHHHhhcCceEEEcCcCHHHhccC-CCceEEEEEEecCCCeEEEeC-CEEEECCCCCCCHHHHHhhcc
Confidence 333344568999999999999876 467888988744676677888 899999996544456554443
No 77
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain, zizimin1, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=80.88 E-value=2.2 Score=39.10 Aligned_cols=90 Identities=19% Similarity=0.260 Sum_probs=53.5
Q ss_pred ccccccCceeEEe------cCCCCCCcceeeeccc-----eEEeecCCC-CCCceeeEE---eccchhhhcCCCceeEEE
Q psy3407 547 DQVFRSGNLMYKI------NDKSAWTPGFVNLQNG-----ILTVKEAPN-SPKNISVIQ---CHSFSQVYDKSRPYTFKV 611 (749)
Q Consensus 547 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~-----~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 611 (749)
..+.++|-|+-+- .....|..-|.-|.++ .|..-..+. ..+-..+|. |... .+-++.++|.|.|
T Consensus 16 ~~~~~~G~L~K~~~~~~~~~~~k~Wk~RwfvL~~~~~g~~~L~yy~~~~~~~~~~g~I~L~~~~~~-~~~~~~~~~~F~i 94 (150)
T 1wg7_A 16 GGITKHGWLYKGNMNSAISVTMRSFKRRFFHLIQLGDGSYNLNFYKDEKISKEPKGSIFLDSCMGV-VQNNKVRRFAFEL 94 (150)
T ss_dssp CCCCCEEEEEECCCCSSHHHHHSSCEEEEEEEEECSSSCEEEEEESSSCCSSCCSEEECTTTCCEE-CCCCSSCTTEEEE
T ss_pred CCeeEEEEEEEecCCccccccccCeeEEEEEEecCCCCceEEEEECCCCCCCCcCcEEecccCEEE-ecCCCCCceEEEE
Confidence 4556666655442 1224688888778775 665543333 333333333 3222 1234578999999
Q ss_pred ecccceEEEEecCChhhhhHHHHhee
Q psy3407 612 NFNPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 612 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
....-.-.+|+|.++.++-+|++.|.
T Consensus 95 ~~~~~r~~~l~A~s~~e~~~Wi~al~ 120 (150)
T 1wg7_A 95 KMQDKSSYLLAADSEVEMEEWITILN 120 (150)
T ss_dssp ECSSSCEEEEECSSHHHHHHHHHHHH
T ss_pred EeCCCcEEEEEeCCHHHHHHHHHHHH
Confidence 87643445677888888888888764
No 78
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET: BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8 d.58.1.6 PDB: 2gmj_A*
Probab=80.45 E-value=1.6 Score=49.56 Aligned_cols=60 Identities=12% Similarity=0.209 Sum_probs=45.5
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEe----cCCeE-------EEEEeccEEEEccCCCCC
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYIN----SQGKI-------CHVNSTREVILSAGAVGS 170 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d----~~G~~-------~~V~ArKeVILAAGAIeT 170 (749)
.+|...+++.|++|+.++.|++|+.+++++++||.+.+ .+|+. .+++| +.||+|.|+-..
T Consensus 148 ~~L~~~a~~~Gv~i~~g~~v~~l~~~~~g~V~gV~~~~~g~~~~G~~~~~~~~g~~i~A-d~VV~AdG~~S~ 218 (584)
T 2gmh_A 148 SWMGEQAEALGVEVYPGYAAAEILFHEDGSVKGIATNDVGIQKDGAPKTTFERGLELHA-KVTIFAEGCHGH 218 (584)
T ss_dssp HHHHHHHHHTTCEEETTCCEEEEEECTTSSEEEEEECCEEECTTSCEEEEEECCCEEEC-SEEEECCCTTCH
T ss_pred HHHHHHHHHcCCEEEcCCEEEEEEEcCCCCEEEEEeCCccccCCCCcccccCCceEEEC-CEEEEeeCCCch
Confidence 34544444558999999999999998557899998863 35543 46888 999999998754
No 79
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD, disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Probab=80.41 E-value=3.6 Score=41.30 Aligned_cols=56 Identities=21% Similarity=0.343 Sum_probs=44.8
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
..|+++++++.|.+|.-+ ++++++|++.+. +|+...+.+ ..||+|.|..-.+.+|.
T Consensus 192 ~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~-D~vi~a~G~~p~~~~l~ 248 (310)
T 1fl2_A 192 LKNVDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHNIEL-AGIFVQIGLLPNTNWLE 248 (310)
T ss_dssp CTTEEEESSEEEEEEEES-SSSEEEEEEEETTTCCEEEEEC-SEEEECSCEEESCGGGT
T ss_pred CCCeEEecCCceEEEEcC-CCcEEEEEEEECCCCcEEEEEc-CEEEEeeCCccCchHHh
Confidence 479999999999999866 568899999873 577778888 89999999765555553
No 80
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21, myristate, transport, nucleotide-binding, rhogap protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP: b.55.1.1 PDB: 2dhj_A
Probab=80.40 E-value=2.4 Score=39.72 Aligned_cols=79 Identities=22% Similarity=0.354 Sum_probs=49.3
Q ss_pred CCCCCcceeeeccceEEeecCCCC----CCc---eeeEEeccchhhhcCCCceeEEEecccceEEEEecCChhhhhHHHH
Q psy3407 562 KSAWTPGFVNLQNGILTVKEAPNS----PKN---ISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQ 634 (749)
Q Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 634 (749)
...|..-|+-|.++.|..-..+.. |+. |....|-.-...-+..++|.|.|...- .-.+|.|.++.++-+|++
T Consensus 26 ~k~WkkRwfvL~~~~L~yyk~~~~~~~~~~g~i~l~~~~~~~~~~~~~~~~~~~F~I~t~~-r~~~l~A~s~~e~~~Wi~ 104 (168)
T 2j59_M 26 IRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPISVNACLIDISYSETKRKNVFRLTTSD-CECLFQAEDRDDMLAWIK 104 (168)
T ss_dssp --CCEEEEEEEETTEEEEESCTTCC--------CEECSSCEEEECSSSCSCSSEEEEECSS-CEEEEECSSHHHHHHHHH
T ss_pred CCCceEEEEEEeCCEEEEEECCcccccccCCceEecccceEEEeccccCCCCCEEEEEeCC-ceEEEEcCCHHHHHHHHH
Confidence 456999999999998887555522 333 222223110111245789999998655 456788899999999998
Q ss_pred heeeEEE
Q psy3407 635 DIMISIK 641 (749)
Q Consensus 635 ~~~~~~~ 641 (749)
-|.-.+.
T Consensus 105 ai~~~~~ 111 (168)
T 2j59_M 105 TIQESSN 111 (168)
T ss_dssp HHHHHCC
T ss_pred HHHHHHh
Confidence 8765443
No 81
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A {Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Probab=79.95 E-value=2 Score=47.44 Aligned_cols=55 Identities=18% Similarity=0.167 Sum_probs=44.7
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
.+.+++|++++.|++|..+ + ++.+|++.+. +|+...++| +.||+|+|+. +..|+.
T Consensus 160 ~~~Gv~i~~~~~V~~l~~~-~-~~~~V~~~d~~~G~~~~i~A-~~VV~AtG~~-s~~l~~ 215 (501)
T 2qcu_A 160 VRKGGEVLTRTRATSARRE-N-GLWIVEAEDIDTGKKYSWQA-RGLVNATGPW-VKQFFD 215 (501)
T ss_dssp HHTTCEEECSEEEEEEEEE-T-TEEEEEEEETTTCCEEEEEE-SCEEECCGGG-HHHHHH
T ss_pred HHcCCEEEcCcEEEEEEEe-C-CEEEEEEEECCCCCEEEEEC-CEEEECCChh-HHHHHH
Confidence 4558999999999999887 3 6889988763 677778999 8999999986 666664
No 82
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex, pleckstrin homology domain, ligand binding protein; HET: I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Probab=78.22 E-value=5.9 Score=35.90 Aligned_cols=90 Identities=21% Similarity=0.309 Sum_probs=56.2
Q ss_pred cccccCceeEE-e--cC---CCCCCcceeeeccceEEeecCCC-----------CCCceeeEEeccchh--hh-cCCCce
Q psy3407 548 QVFRSGNLMYK-I--ND---KSAWTPGFVNLQNGILTVKEAPN-----------SPKNISVIQCHSFSQ--VY-DKSRPY 607 (749)
Q Consensus 548 ~~~~~~~~~~~-~--~~---~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~--~~-~~~~~~ 607 (749)
.+.+.|-|.-| + .. ...|..-++-|.++.|..-..+. ..+....|.-+...- .. +..|++
T Consensus 11 ~~~k~G~L~kk~~~~~G~~~~k~Wk~rwfvL~~~~L~yykd~~~~~~~~~~~~~~~~p~g~I~L~~~~v~~~~~~~kr~~ 90 (129)
T 2p0d_A 11 EVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSRPESSVDLRGAALAHGRHLSSRRN 90 (129)
T ss_dssp SEEEEEEEEEEEEEETTEECCCCCEEEEEEEESSEEEEESCC--------------CCSEEEECTTCEEEECTTSCSSSS
T ss_pred ceeEEEEEEEeeeccCCCcCCCCceEEEEEEeCCEEEEEcCcccccccccccccCCCCccEEEeCCcEEEECCCCCCCCc
Confidence 45566766543 1 12 15799999999998887654442 122233333222211 12 246899
Q ss_pred eEEEecccceEEEEecCChhhhhHHHHhee
Q psy3407 608 TFKVNFNPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
.|++....-.-.+|.|.++.++-+|++.|.
T Consensus 91 ~F~l~t~~~~~yl~qA~s~~e~~~Wi~aI~ 120 (129)
T 2p0d_A 91 VLHIRTIPGHEFLLQSDHETELRAWHRALR 120 (129)
T ss_dssp EEEEECTTSCEEEEECSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCEEEEECCCHHHHHHHHHHHH
Confidence 999986555667799999999999998764
No 83
>2coc_A FYVE, rhogef and PH domain containing protein 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=77.64 E-value=5.3 Score=35.97 Aligned_cols=84 Identities=12% Similarity=0.198 Sum_probs=56.1
Q ss_pred ccCceeEEecCCCCCCcceeeeccc---eEEeecCCCCCCceeeEEeccchhh-----hcCCCceeEEEecccceEEEEe
Q psy3407 551 RSGNLMYKINDKSAWTPGFVNLQNG---ILTVKEAPNSPKNISVIQCHSFSQV-----YDKSRPYTFKVNFNPYSFVLFA 622 (749)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 622 (749)
.+|-|..+-+ ...|..-++-|.+. +|-.-..+..-+-...|--.++.-. -+..++|.||+..+- --..|+
T Consensus 10 ~~G~L~k~~~-~~~WkkrWfVL~~~~~~~Ly~Yk~~~d~~p~g~I~L~g~~V~~~~~~~~~~~~~~Fki~~~~-~~y~f~ 87 (112)
T 2coc_A 10 LCGPLRLSES-GETWSEVWAAIPMSDPQVLHLQGGSQDGRLPRTIPLPSCKLSVPDPEERLDSGHVWKLQWAK-QSWYLS 87 (112)
T ss_dssp SEEEEEEESS-SSCEEEEEEECCTTCTTCEEEECCTTCSSSCSEECGGGCEEECCCSSSCCSSSEEEEEEETT-EEEEEE
T ss_pred EEEEEEecCC-CCCceEEEEEEECCCccEEEEECCCCccCcceEEEcCCCEEEecCcccccCCCCEEEEecCC-eEEEEE
Confidence 3477766533 57888888888763 6776555555555555554444322 234589999998544 446789
Q ss_pred cCChhhhhHHHHhe
Q psy3407 623 APDESQLFDWLQDI 636 (749)
Q Consensus 623 ~~~~~~~~~~~~~~ 636 (749)
|.++.++-+||..|
T Consensus 88 A~s~e~~~~Wl~al 101 (112)
T 2coc_A 88 ASSAELQQQWLETL 101 (112)
T ss_dssp ESSHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999999865
No 84
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Probab=77.62 E-value=3.7 Score=41.05 Aligned_cols=90 Identities=12% Similarity=0.196 Sum_probs=58.8
Q ss_pred cccccCceeEEecCC-----CCCCcceeeeccceEEeecCCCCCCceeeEEeccchhhhc-CCCceeEEEecccceEEEE
Q psy3407 548 QVFRSGNLMYKINDK-----SAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYD-KSRPYTFKVNFNPYSFVLF 621 (749)
Q Consensus 548 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 621 (749)
.+.++|-|.-+-... ..|..-|.-|.++.|..-+.+...+-..+|.-.....|.+ ..+++.|.|.. |-.-..|
T Consensus 57 ~~~k~G~L~K~g~~~~~~~~k~WkkRwfvL~~~~L~Yyk~~~~~~~~g~I~L~~~~~v~~~~~k~~~F~I~t-~~r~~~l 135 (228)
T 3tfm_A 57 EALKQGWLHNNGGGSSTLSRRNWKKRWFVLRQSKLMYFENDSEEKLKGTVEVRSAKEIIDNTNKENGIDIIM-ADRTFHL 135 (228)
T ss_dssp CSSEEEEEEECGGGCSSSCGGGCEEEEEEECSSEEEEESSTTCCSEEEEEEGGGCSEEEEETTTTSEEEEEC-SSCEEEE
T ss_pred CcceEEEEEEECCCcCCcccCCceEEEEEEeCCEEEEEeCCCCcceeEEEEcCCCEEeccCCCCCcEEEEEc-CCcEEEE
Confidence 455566554333322 6899999999999999887777666566665544443332 35788888854 4455556
Q ss_pred ecCChhhhhHHHHheee
Q psy3407 622 AAPDESQLFDWLQDIMI 638 (749)
Q Consensus 622 ~~~~~~~~~~~~~~~~~ 638 (749)
.|.++.++-+|++.|--
T Consensus 136 ~A~s~~e~~~Wv~aL~~ 152 (228)
T 3tfm_A 136 IAESPEDASQWFSVLSQ 152 (228)
T ss_dssp ECSSHHHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHHHHH
Confidence 77777777777776643
No 85
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport, pleckstrin homology domain, phosphatidylinositol binding, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=77.56 E-value=4.7 Score=37.03 Aligned_cols=95 Identities=16% Similarity=0.293 Sum_probs=56.0
Q ss_pred ccccccccCceeEEecCCCCCCcceeeeccceEEeecCCCCCCceeeEEeccchhh--hcCCCceeEEEeccc-------
Q psy3407 545 GHDQVFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQV--YDKSRPYTFKVNFNP------- 615 (749)
Q Consensus 545 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~------- 615 (749)
+...|.++|-|. |-+-...|..-+.-|.++.|..-+.+...+-...|.-.+++-+ -++.++|.|++...-
T Consensus 4 ~~~~v~k~GwL~-K~g~~k~WkrRWfVLk~~~L~yyk~~~~~~p~G~I~L~~~~v~~~~~~~~~~~F~i~~~~~~~i~~~ 82 (130)
T 1v88_A 4 GSSGIVMADWLK-IRGTLKSWTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERPSKKDGFCFKLFHPLEQSIWAV 82 (130)
T ss_dssp SSSSCCEEEEEE-ECCSSSSCEEEEEEEETTEEEEESCSSSCCCCEEEECSSCEECCCCTTTSSCEEEEECTTCCCCSCS
T ss_pred CCCceEEEeEEE-EeCCCCCceEEEEEEECCEEEEECCCCCCCceEEEEcCCCEEEECCCCCCCeEEEEEcCCccccccc
Confidence 344566677664 3334557888888888998887666655554455544443322 223456888885321
Q ss_pred ----------------ceEEEEecCChhhhhHHHHheeeEE
Q psy3407 616 ----------------YSFVLFAAPDESQLFDWLQDIMISI 640 (749)
Q Consensus 616 ----------------~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (749)
-.+..|.|.+|.+.-+|+..|--.|
T Consensus 83 ~g~~~~~~g~~~~~~~~~~~~f~A~s~~e~~~Wi~ai~~a~ 123 (130)
T 1v88_A 83 KGPKGEAVGSITQPLPSSYLIIRATSESDGRCWMDALELAL 123 (130)
T ss_dssp SCTTSCSCSCCCSCCCSSCCEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCcccccccccccCCceEEEEECCCHHHHHHHHHHHHHHH
Confidence 1223566667777777766654433
No 86
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=77.34 E-value=2.6 Score=44.32 Aligned_cols=55 Identities=15% Similarity=0.083 Sum_probs=40.3
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
+|...+++.|++|+.++.|+.|..++++.. |.+.+.+|+..+++| +.||.|+|+-
T Consensus 111 ~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~--v~v~~~~g~~~~~~a-~~vV~A~G~~ 165 (421)
T 3nix_A 111 TLADEAARQGVDVEYEVGVTDIKFFGTDSV--TTIEDINGNKREIEA-RFIIDASGYG 165 (421)
T ss_dssp HHHHHHHHHTCEEECSEEEEEEEEETTEEE--EEEEETTSCEEEEEE-EEEEECCGGG
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEeCCEEE--EEEEcCCCCEEEEEc-CEEEECCCCc
Confidence 443333445899999999999998743322 555555788888999 9999999954
No 87
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=76.74 E-value=3 Score=45.85 Aligned_cols=48 Identities=17% Similarity=0.185 Sum_probs=37.9
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIe 169 (749)
.++.|++|+.++.| +|+.+ +++++||.+.+.+| .++| +.||+|+|+..
T Consensus 129 ~~~~gv~i~~~~~v-~l~~~-~~~v~Gv~v~~~~g---~~~a-~~VVlAtGg~~ 176 (472)
T 2e5v_A 129 AREEGIPIIEDRLV-EIRVK-DGKVTGFVTEKRGL---VEDV-DKLVLATGGYS 176 (472)
T ss_dssp HHHTTCCEECCCEE-EEEEE-TTEEEEEEETTTEE---ECCC-SEEEECCCCCG
T ss_pred HHhCCCEEEECcEE-EEEEe-CCEEEEEEEEeCCC---eEEe-eeEEECCCCCc
Confidence 35678999999999 99887 57899998854233 3567 99999999864
No 88
>1trb_A Thioredoxin reductase; oxidoreductase(flavoenzyme); HET: FAD; 2.00A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 PDB: 1cl0_A* 1f6m_A* 1tdf_A* 1tde_A*
Probab=76.54 E-value=4 Score=41.01 Aligned_cols=58 Identities=14% Similarity=0.232 Sum_probs=44.7
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-C-CeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-Q-GKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~-G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
+++.++++++++.|.+|.-+ ++++++|++.+. + |+..++.+ ..||+|.|..-.+.+|.
T Consensus 194 l~~~gv~i~~~~~v~~i~~~-~~~v~~v~~~~~~~~g~~~~i~~-D~vv~a~G~~p~~~~~~ 253 (320)
T 1trb_A 194 VENGNIILHTNRTLEEVTGD-QMGVTGVRLRDTQNSDNIESLDV-AGLFVAIGHSPNTAIFE 253 (320)
T ss_dssp HHTSSEEEECSCEEEEEEEC-SSSEEEEEEECCTTCCCCEEEEC-SEEEECSCEEESCGGGT
T ss_pred cccCCeEEEcCceeEEEEcC-CCceEEEEEEeccCCCceEEEEc-CEEEEEeCCCCChHHhc
Confidence 44678999999999999876 458999999752 2 65567888 89999999765555543
No 89
>2dhk_A TBC1 domain family member 2; PH domain, paris-1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=76.29 E-value=5.9 Score=34.96 Aligned_cols=87 Identities=14% Similarity=0.218 Sum_probs=53.9
Q ss_pred ccccCceeEEecC---CCCCCcceeeeccc--eEEeecCCCCCCceeeEEeccchhhhc-CCCceeEEEecccceEEEEe
Q psy3407 549 VFRSGNLMYKIND---KSAWTPGFVNLQNG--ILTVKEAPNSPKNISVIQCHSFSQVYD-KSRPYTFKVNFNPYSFVLFA 622 (749)
Q Consensus 549 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 622 (749)
+..+|-|. |-.. ...|..-|.-|.++ .|..-+.+...+-..+|.-.....+.+ ..+++.|++.-. -.-..|.
T Consensus 8 ~~~~G~L~-K~g~~~~~k~WkkRwfvL~~~~~~L~Yy~~~~~~~~~g~I~L~~~~~~~~~~~~~~~F~i~~~-~r~~~l~ 85 (119)
T 2dhk_A 8 KKLCGYLS-KFGGKGPIRGWKSRWFFYDERKCQLYYSRTAQDANPLDSIDLSSAVFDCKADAEEGIFEIKTP-SRVITLK 85 (119)
T ss_dssp CCCEEEEE-ECSCSSSSCCCEEEEEEEETTTTEEEEESSTTCCSCSEEEEGGGCEEEECTTGGGCEEEEECS-SCCEEEE
T ss_pred CcEEEEEE-ecCCCCCCCCceeEEEEEECCccEEEEECCCCCcccccEEECCCCEEEecCCCCCCEEEEEeC-CcEEEEE
Confidence 34455543 3332 35788888888877 777766665555555665554444432 356788887654 3444567
Q ss_pred cCChhhhhHHHHhee
Q psy3407 623 APDESQLFDWLQDIM 637 (749)
Q Consensus 623 ~~~~~~~~~~~~~~~ 637 (749)
|.++.+.-+|++.|.
T Consensus 86 a~s~~e~~~Wi~al~ 100 (119)
T 2dhk_A 86 AATKQAMLYWLQQLQ 100 (119)
T ss_dssp CSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH
Confidence 788888888887653
No 90
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=76.19 E-value=1.8 Score=49.32 Aligned_cols=47 Identities=23% Similarity=0.289 Sum_probs=38.3
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIe 169 (749)
++.|++|+.++.|++|+.+ ++++++|+.. +|+ +++| +.||+|.|+-.
T Consensus 231 ~~~Gv~I~~~t~V~~I~~~-~~~v~gV~l~--~G~--~i~A-d~VVlA~G~~s 277 (549)
T 3nlc_A 231 IELGGEIRFSTRVDDLHME-DGQITGVTLS--NGE--EIKS-RHVVLAVGHSA 277 (549)
T ss_dssp HHTTCEEESSCCEEEEEES-SSBEEEEEET--TSC--EEEC-SCEEECCCTTC
T ss_pred HhcCCEEEeCCEEEEEEEe-CCEEEEEEEC--CCC--EEEC-CEEEECCCCCh
Confidence 4468999999999999987 5688888874 454 4778 88999999854
No 91
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain, oxidor; HET: FAD KPC; 1.65A {Xanthobacter autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Probab=76.02 E-value=3.7 Score=45.63 Aligned_cols=67 Identities=16% Similarity=0.265 Sum_probs=48.2
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH-HHhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ-LLMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr-LLL~SGI 179 (749)
+|....++.|++|++++.|.+|.-+++++++++.+...+|+ .++.| +.||+|+|.--... +|...|+
T Consensus 260 ~l~~~l~~~GV~i~~~~~V~~i~~~~~~~v~~~~v~~~~G~-~~i~a-D~Vv~A~G~~p~~~~~l~~~gl 327 (523)
T 1mo9_A 260 YVLDRMKEQGMEIISGSNVTRIEEDANGRVQAVVAMTPNGE-MRIET-DFVFLGLGEQPRSAELAKILGL 327 (523)
T ss_dssp HHHHHHHHTTCEEESSCEEEEEEECTTSBEEEEEEEETTEE-EEEEC-SCEEECCCCEECCHHHHHHHTC
T ss_pred HHHHHHHhCCcEEEECCEEEEEEEcCCCceEEEEEEECCCc-EEEEc-CEEEECcCCccCCccCHHHcCC
Confidence 34444556789999999999998764567766666554564 36788 89999999775555 5666665
No 92
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=75.87 E-value=1.5 Score=45.18 Aligned_cols=55 Identities=22% Similarity=0.228 Sum_probs=39.8
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
+++.+++|++++.|++|..++ ++ ++|+. .+| +++| +.||+|+|+- |++|+...|+
T Consensus 164 a~~~Gv~i~~~~~V~~i~~~~-~~-~~V~t--~~g---~i~a-~~VV~A~G~~-s~~l~~~~g~ 218 (381)
T 3nyc_A 164 IRRNQGQVLCNHEALEIRRVD-GA-WEVRC--DAG---SYRA-AVLVNAAGAW-CDAIAGLAGV 218 (381)
T ss_dssp HHHTTCEEESSCCCCEEEEET-TE-EEEEC--SSE---EEEE-SEEEECCGGG-HHHHHHHHTC
T ss_pred HHHCCCEEEcCCEEEEEEEeC-Ce-EEEEe--CCC---EEEc-CEEEECCChh-HHHHHHHhCC
Confidence 345689999999999999873 33 44443 234 5788 8899999974 6777766553
No 93
>3oz2_A Digeranylgeranylglycerophospholipid reductase; structural genomics, joint center for structural genomics; HET: MSE FAD OZ2; 1.60A {Thermoplasma acidophilum}
Probab=74.92 E-value=3.8 Score=41.94 Aligned_cols=59 Identities=15% Similarity=0.212 Sum_probs=45.1
Q ss_pred hhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCCh
Q psy3407 109 KAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSP 171 (749)
Q Consensus 109 ~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTP 171 (749)
..+|...+.+.+++++.++.|+.+..+ ++++++|.... +|...+++| +.||-|-|+ +|.
T Consensus 105 ~~~L~~~a~~~G~~~~~~~~v~~~~~~-~~~~~~v~~~~-~~~~~~~~a-~~vIgAdG~-~S~ 163 (397)
T 3oz2_A 105 DKHLAALAAKAGADVWVKSPALGVIKE-NGKVAGAKIRH-NNEIVDVRA-KMVIAADGF-ESE 163 (397)
T ss_dssp HHHHHHHHHHHTCEEESSCCEEEEEEE-TTEEEEEEEEE-TTEEEEEEE-EEEEECCCT-TCH
T ss_pred HHHHHHHHHhcCcEEeeeeeeeeeeec-cceeeeeeecc-cccceEEEE-eEEEeCCcc-ccH
Confidence 334544445678999999999999887 57899998876 788888999 777777774 443
No 94
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=74.58 E-value=3.2 Score=47.44 Aligned_cols=55 Identities=16% Similarity=0.149 Sum_probs=44.7
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCC
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGA 167 (749)
.+|...+++.|++++.++.|+.|..+ ++.+++|++.+ +|...+++| +.||.|.|+
T Consensus 132 ~~L~~~a~~~Gv~i~~g~~V~~v~~~-~g~~~~V~~~~-~G~~~~i~A-dlVV~AdG~ 186 (591)
T 3i3l_A 132 KLLLDEARSRGITVHEETPVTDVDLS-DPDRVVLTVRR-GGESVTVES-DFVIDAGGS 186 (591)
T ss_dssp HHHHHHHHHTTCEEETTCCEEEEECC-STTCEEEEEEE-TTEEEEEEE-SEEEECCGG
T ss_pred HHHHHHHHhCCCEEEeCCEEEEEEEc-CCCEEEEEEec-CCceEEEEc-CEEEECCCC
Confidence 34544445578999999999999987 46788898876 787778999 999999997
No 95
>1x1f_A Signal-transducing adaptor protein 1; docking protein BRDG1, PH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=73.77 E-value=7.5 Score=36.75 Aligned_cols=88 Identities=11% Similarity=0.135 Sum_probs=47.2
Q ss_pred ccccCceeEEecCCCCCCcceeeeccceEEeecCCCCCCceeeEEeccchhh----hcCCCceeEEEecccceEEEEecC
Q psy3407 549 VFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQV----YDKSRPYTFKVNFNPYSFVLFAAP 624 (749)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 624 (749)
+..+|-|.-+=.....|..-|.-|++..|..-..+...+-...|.--+++.+ -.+.+++.|+|...--. .+|.|+
T Consensus 18 v~keG~L~Kkg~~~k~WkrRWFvLk~~~L~Yyk~~~d~~~~g~I~L~~~~~~~~~~~~~~~~~~F~I~t~~r~-~~f~A~ 96 (149)
T 1x1f_A 18 LYFEGFLLIKRSGYREYEHYWTELRGTTLFFYTDKKSIIYVDKLDIVDLTCLTEQNSTEKNCAKFTLVLPKEE-VQLKTE 96 (149)
T ss_dssp EEEEEEEEEECTTCCSCEEEEEEEETTEEEEESCSSCSSCSEECCCSSCCEEEECCCTTSCCCEEEEECSSCC-EEEECS
T ss_pred ccEEEEEEEeCCCCCCceeEEEEEcCCEEEEEeCCCccccCcEEECCCceEEeeccCCCCcCcEEEEEcCCCE-EEEEcC
Confidence 4445544433333345666666665555554433333332222222222222 11335678888654333 368899
Q ss_pred ChhhhhHHHHhee
Q psy3407 625 DESQLFDWLQDIM 637 (749)
Q Consensus 625 ~~~~~~~~~~~~~ 637 (749)
++.+.-+|++.|-
T Consensus 97 s~ee~~eWi~aI~ 109 (149)
T 1x1f_A 97 NTESGEEWRGFIL 109 (149)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 9999999998774
No 96
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=73.21 E-value=3.4 Score=43.30 Aligned_cols=53 Identities=17% Similarity=0.218 Sum_probs=36.8
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhc
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLS 177 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~S 177 (749)
+++.+++|++++.|++|..++ +. |.+...+| +++| +.||+|+|+. +++|+-..
T Consensus 163 a~~~Gv~i~~~~~V~~i~~~~-~~---v~v~t~~g---~i~a-~~VV~A~G~~-s~~l~~~~ 215 (397)
T 2oln_A 163 AQAAGATLRAGETVTELVPDA-DG---VSVTTDRG---TYRA-GKVVLACGPY-TNDLLEPL 215 (397)
T ss_dssp HHHTTCEEEESCCEEEEEEET-TE---EEEEESSC---EEEE-EEEEECCGGG-HHHHHGGG
T ss_pred HHHcCCEEECCCEEEEEEEcC-Ce---EEEEECCC---EEEc-CEEEEcCCcC-hHHHhhhc
Confidence 345689999999999998873 33 33333234 5788 8899999984 55555433
No 97
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=72.68 E-value=2 Score=49.91 Aligned_cols=49 Identities=24% Similarity=0.417 Sum_probs=38.2
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
.+|++|+ ++.|+.|..+ +++++||... +|. .++| +.||+|+|+.-..++
T Consensus 136 ~~GVeI~-~~~Vt~L~~e-~g~V~GV~t~--dG~--~i~A-daVVLATG~~s~~~~ 184 (637)
T 2zxi_A 136 QENLYIK-QEEVVDIIVK-NNQVVGVRTN--LGV--EYKT-KAVVVTTGTFLNGVI 184 (637)
T ss_dssp CTTEEEE-ESCEEEEEES-SSBEEEEEET--TSC--EEEC-SEEEECCTTCBTCEE
T ss_pred CCCCEEE-EeEEEEEEec-CCEEEEEEEC--CCc--EEEe-CEEEEccCCCccCce
Confidence 3799995 7899999987 5789999874 564 5778 899999998754443
No 98
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=72.29 E-value=6.5 Score=39.71 Aligned_cols=87 Identities=16% Similarity=0.260 Sum_probs=56.7
Q ss_pred ccCceeEEecCCCCCCcceeeeccceEEeecCCCC--CC-ceeeEEeccc--------hhhhcCCCceeEEEecccc---
Q psy3407 551 RSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNS--PK-NISVIQCHSF--------SQVYDKSRPYTFKVNFNPY--- 616 (749)
Q Consensus 551 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~--- 616 (749)
.+|-|+.+=.....|..-|.-|.++.|..-..+.+ |+ .|.++.+... ...+...++|.|.+-.+-.
T Consensus 170 ~~G~L~k~~~~~k~WkkR~fvL~~~~L~yyk~~~~~~~~~~i~l~~l~~~~v~~~~~~~~~~~~~~~~~F~i~~~~~~~~ 249 (291)
T 3tca_A 170 LEGALYLKEDGKKSWKRRYFLLRASGIYYVPKGKTKTSRDLACFIQFENVNIYYGIQCKMKYKAPTDHCFVLKHPQIQKE 249 (291)
T ss_dssp CEEEEEEECTTSSCEEEEEEEECSSEEEECCTTCCSSTTTCEEEEEGGGCEEEEECSHHHHHCCSSSCEEEEECTTCCSC
T ss_pred eEEEEEEeCCCCCCceEEEEEEeCCEEEEEecCccccccCceeeccceeEEEEecCccccccCCCCCeEEEEEcCCCCCC
Confidence 35667766666778999999999888876443333 32 3555555433 2234456889999865321
Q ss_pred --eEEEEecCChhhhhHHHHhee
Q psy3407 617 --SFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 617 --~~~~~~~~~~~~~~~~~~~~~ 637 (749)
....|+|++|..+-+|++-|-
T Consensus 250 ~~~~~~l~A~s~~e~~~Wi~air 272 (291)
T 3tca_A 250 SQYIKYLCCDDARTLSQWVMGIR 272 (291)
T ss_dssp CTTSEEEECSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCHHHHHHHHHHHH
Confidence 124578888888888988763
No 99
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=72.00 E-value=2.5 Score=47.24 Aligned_cols=48 Identities=19% Similarity=0.233 Sum_probs=36.9
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
.++.|.+|++++.|++|+.+++++++||+.. +|+ +++| +.||++++-+
T Consensus 266 ~~~~Gg~i~l~t~V~~I~~d~~g~v~gV~~~--~G~--~i~A-d~VI~a~~~~ 313 (475)
T 3p1w_A 266 CAINGGTFMLNKNVVDFVFDDDNKVCGIKSS--DGE--IAYC-DKVICDPSYV 313 (475)
T ss_dssp HHHC--CEESSCCEEEEEECTTSCEEEEEET--TSC--EEEE-EEEEECGGGC
T ss_pred HHHcCCEEEeCCeEEEEEEecCCeEEEEEEC--CCc--EEEC-CEEEECCCcc
Confidence 4456899999999999999546889999874 465 4778 8899999866
No 100
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=71.45 E-value=4.2 Score=43.36 Aligned_cols=64 Identities=20% Similarity=0.211 Sum_probs=49.9
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIG 180 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIG 180 (749)
++....++.|++|++++.|.+|..+ ++++++|+.. +|+ ++.| ..||+|+|..-...+|..+|+.
T Consensus 199 ~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~v~l~--dG~--~i~a-D~Vv~a~G~~p~~~l~~~~gl~ 262 (415)
T 3lxd_A 199 FYQAEHRAHGVDLRTGAAMDCIEGD-GTKVTGVRMQ--DGS--VIPA-DIVIVGIGIVPCVGALISAGAS 262 (415)
T ss_dssp HHHHHHHHTTCEEEETCCEEEEEES-SSBEEEEEES--SSC--EEEC-SEEEECSCCEESCHHHHHTTCC
T ss_pred HHHHHHHhCCCEEEECCEEEEEEec-CCcEEEEEeC--CCC--EEEc-CEEEECCCCccChHHHHhCCCC
Confidence 4444455678999999999999876 5688899874 464 4667 8999999987777788777763
No 101
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=71.25 E-value=6.3 Score=42.38 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=43.4
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCC----------------C--cEEEEEEEec----CC------eEEEEEeccEEE
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSK----------------L--KAYGVEYINS----QG------KICHVNSTREVI 162 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~g----------------g--rAtGV~y~d~----~G------~~~~V~ArKeVI 162 (749)
.+..+.+.+|++|+.++.|+.|+.+++ + ++.||.+... +| ...+++| +.||
T Consensus 166 L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~A-k~VV 244 (344)
T 3jsk_A 166 VLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTINA-PVII 244 (344)
T ss_dssp HHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEEC-SEEE
T ss_pred HHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEEc-CEEE
Confidence 333444558999999999999998741 2 8999988531 23 3467899 9999
Q ss_pred EccCCCCC
Q psy3407 163 LSAGAVGS 170 (749)
Q Consensus 163 LAAGAIeT 170 (749)
+|.|.-..
T Consensus 245 ~ATG~~s~ 252 (344)
T 3jsk_A 245 STTGHDGP 252 (344)
T ss_dssp ECCCSSSS
T ss_pred ECCCCCch
Confidence 99996543
No 102
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=70.92 E-value=2.6 Score=48.31 Aligned_cols=53 Identities=11% Similarity=0.083 Sum_probs=37.5
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhc
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLS 177 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~S 177 (749)
++.|++|++++.|++|+.++ ++ ++|+ ..+|. +++| +.||+|+|+- ++.|+...
T Consensus 428 ~~~Gv~i~~~t~V~~l~~~~-~~-v~V~--t~~G~--~i~A-d~VVlAtG~~-s~~l~~~~ 480 (676)
T 3ps9_A 428 QQQGLQIYYQYQLQNFSRKD-DC-WLLN--FAGDQ--QATH-SVVVLANGHQ-ISRFSQTS 480 (676)
T ss_dssp HHTTCEEEESCCEEEEEEET-TE-EEEE--ETTSC--EEEE-SEEEECCGGG-GGCSTTTT
T ss_pred HhCCCEEEeCCeeeEEEEeC-Ce-EEEE--ECCCC--EEEC-CEEEECCCcc-hhcccccc
Confidence 45689999999999999874 33 2443 33554 3788 8899999976 55554433
No 103
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=70.30 E-value=3.3 Score=48.22 Aligned_cols=50 Identities=18% Similarity=0.312 Sum_probs=38.3
Q ss_pred ccC-CCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 116 KFR-ENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 116 ~~r-~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
+++ +|++|+ ++.|+.|+.+ +++++||... +|. .++| +.||+|+|+.-..+
T Consensus 134 Le~~~GV~I~-~~~V~~L~~e-~g~V~GV~t~--dG~--~I~A-d~VVLATGt~s~~~ 184 (651)
T 3ces_A 134 LENQPNLMIF-QQAVEDLIVE-NDRVVGAVTQ--MGL--KFRA-KAVVLTVGTFLDGK 184 (651)
T ss_dssp HHTCTTEEEE-ECCEEEEEES-SSBEEEEEET--TSE--EEEE-EEEEECCSTTTCCE
T ss_pred HHhCCCCEEE-EEEEEEEEec-CCEEEEEEEC--CCC--EEEC-CEEEEcCCCCccCc
Confidence 344 799995 6799999887 5789999773 563 5778 89999999875443
No 104
>1vdc_A NTR, NADPH dependent thioredoxin reductase; hypothetical protein, redox-active center, oxidoreductase, D oxidoreductase; HET: FAD; 2.50A {Arabidopsis thaliana} SCOP: c.3.1.5 c.3.1.5 PDB: 2whd_A*
Probab=69.95 E-value=10 Score=38.27 Aligned_cols=63 Identities=16% Similarity=0.248 Sum_probs=47.3
Q ss_pred hccCCCeEEEcccEEEEEEeCCC-CcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSK-LKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~g-grAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
..++.|+++++++.|.+|.-+++ +++++|++.+. +|+..++.+ ..||+|.|..-...+|. +|+
T Consensus 204 ~~~~~gv~i~~~~~v~~i~~~~~~~~v~~v~~~~~~~g~~~~i~~-D~vi~a~G~~p~~~~~~-~~l 268 (333)
T 1vdc_A 204 ALSNPKIDVIWNSSVVEAYGDGERDVLGGLKVKNVVTGDVSDLKV-SGLFFAIGHEPATKFLD-GGV 268 (333)
T ss_dssp HHTCTTEEEECSEEEEEEEESSSSSSEEEEEEEETTTCCEEEEEC-SEEEECSCEEESCGGGT-TSS
T ss_pred HHhCCCeeEecCCceEEEeCCCCccceeeEEEEecCCCceEEEec-CEEEEEeCCccchHHhh-ccc
Confidence 34567999999999999987622 17888999763 576677888 99999999766555543 443
No 105
>2q7v_A Thioredoxin reductase; rossman fold, FAD, flavoprotein, oxidoreductase, redox- active center; HET: FAD; 1.90A {Deinococcus radiodurans}
Probab=69.85 E-value=9.3 Score=38.64 Aligned_cols=59 Identities=19% Similarity=0.195 Sum_probs=45.1
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
...+..++++++++.|.+|.-+ +++++|++.+. +|+..++.+ ..||+|.|..-...+|.
T Consensus 196 ~l~~~~gv~i~~~~~v~~i~~~--~~v~~v~~~~~~~g~~~~i~~-D~vi~a~G~~p~~~~l~ 255 (325)
T 2q7v_A 196 RAFANPKMKFIWDTAVEEIQGA--DSVSGVKLRNLKTGEVSELAT-DGVFIFIGHVPNTAFVK 255 (325)
T ss_dssp HHHTCTTEEEECSEEEEEEEES--SSEEEEEEEETTTCCEEEEEC-SEEEECSCEEESCGGGT
T ss_pred HHHhcCCceEecCCceEEEccC--CcEEEEEEEECCCCcEEEEEc-CEEEEccCCCCChHHHh
Confidence 3344579999999999999865 57889999753 677677888 89999999765545543
No 106
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate hydrogen bond, nucleotide binding fold, thior reductase, thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium} SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A 1zyp_A
Probab=69.47 E-value=8.2 Score=42.90 Aligned_cols=54 Identities=24% Similarity=0.370 Sum_probs=43.9
Q ss_pred CCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 119 ENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 119 ~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
+|+++++++.|++|.-+ ++++++|++.+. +|+...+.+ ..||+|.|..-...+|
T Consensus 404 ~gV~v~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~-D~vi~a~G~~pn~~~l 458 (521)
T 1hyu_A 404 KNVDIILNAQTTEVKGD-GSKVVGLEYRDRVSGDIHSVAL-AGIFVQIGLLPNTHWL 458 (521)
T ss_dssp TTEEEECSEEEEEEEEC-SSSEEEEEEEETTTCCEEEEEC-SEEEECCCEEESCGGG
T ss_pred CCcEEEeCCEEEEEEcC-CCcEEEEEEEeCCCCceEEEEc-CEEEECcCCCCCchHH
Confidence 79999999999999865 568999999873 577778888 8999999976444444
No 107
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=69.09 E-value=4.4 Score=41.90 Aligned_cols=56 Identities=20% Similarity=0.183 Sum_probs=40.1
Q ss_pred hhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcC
Q psy3407 114 PAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSG 178 (749)
Q Consensus 114 pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SG 178 (749)
..+++.+++|+.++.|++|..+ ++++ +|+. .+| .++| +.||+|+|+- ++.|+...|
T Consensus 172 ~~~~~~g~~i~~~~~v~~i~~~-~~~~-~v~~--~~g---~~~a-~~vV~A~G~~-s~~l~~~~~ 227 (382)
T 1ryi_A 172 KAAKMLGAEIFEHTPVLHVERD-GEAL-FIKT--PSG---DVWA-NHVVVASGVW-SGMFFKQLG 227 (382)
T ss_dssp HHHHHTTCEEETTCCCCEEECS-SSSE-EEEE--TTE---EEEE-EEEEECCGGG-THHHHHHTT
T ss_pred HHHHHCCCEEEcCCcEEEEEEE-CCEE-EEEc--CCc---eEEc-CEEEECCChh-HHHHHHhcC
Confidence 3334568999999999999887 3455 5543 234 5788 8999999985 666665544
No 108
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine nucleotide exchange factor, alternative splicing, cell projection, coiled coil; 2.10A {Mus musculus} PDB: 3a8q_A
Probab=68.78 E-value=7.9 Score=39.83 Aligned_cols=77 Identities=18% Similarity=0.259 Sum_probs=51.0
Q ss_pred CCCCcceeeeccceEEeecCC--------CCCCc-eeeEEeccchhhh-cCCCceeEEEecccceEEEEecCChhhhhHH
Q psy3407 563 SAWTPGFVNLQNGILTVKEAP--------NSPKN-ISVIQCHSFSQVY-DKSRPYTFKVNFNPYSFVLFAAPDESQLFDW 632 (749)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~--------~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 632 (749)
..|..-|+-|.++.|..-..+ ..|+. |.+-.|.-- .+- +..+++.|++...+-.-.+|.|.++.++-+|
T Consensus 37 K~WkrRWfVL~~~~L~yyK~~~~~~~~~~~~p~g~I~L~~~~v~-~~~~~~kk~~~F~I~t~~~r~y~f~A~s~ee~~~W 115 (263)
T 3a8p_A 37 RKWKQYWVTLKGCTLLFYETYGKNSTEQNSAPRCALFAEDSIVQ-SVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENW 115 (263)
T ss_dssp CCCEEEEEEEETTEEEEESSCCC------CCCSEEEECTTCEEE-ECTTCSSCSSEEEEECTTSCEEEEECSSHHHHHHH
T ss_pred CCceEEEEEEcCCEEEEEecCcccccccccCccceEEcCCcEEE-ECCcCCCCCCEEEEEcCCCcEEEEEcCCHHHHHHH
Confidence 478888888888888764432 23433 222123211 122 3358999999886666677999999999999
Q ss_pred HHheeeEE
Q psy3407 633 LQDIMISI 640 (749)
Q Consensus 633 ~~~~~~~~ 640 (749)
++.|--.+
T Consensus 116 i~aI~~a~ 123 (263)
T 3a8p_A 116 VTAIHSAC 123 (263)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 98875433
No 109
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=68.63 E-value=3.9 Score=43.47 Aligned_cols=64 Identities=11% Similarity=0.225 Sum_probs=49.6
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIG 180 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIG 180 (749)
++....++.|+++++++.|.+|..+ ++++++|+.. +|+ ++.| ..||+|.|..-...+|..+|+.
T Consensus 189 ~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~~V~~~--dG~--~i~a-D~Vv~a~G~~p~~~l~~~~gl~ 252 (404)
T 3fg2_P 189 YFHDRHSGAGIRMHYGVRATEIAAE-GDRVTGVVLS--DGN--TLPC-DLVVVGVGVIPNVEIAAAAGLP 252 (404)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEEE-TTEEEEEEET--TSC--EEEC-SEEEECCCEEECCHHHHHTTCC
T ss_pred HHHHHHHhCCcEEEECCEEEEEEec-CCcEEEEEeC--CCC--EEEc-CEEEECcCCccCHHHHHhCCCC
Confidence 4444456678999999999999876 4688888874 565 4667 8999999987777788777764
No 110
>2q0l_A TRXR, thioredoxin reductase; bacterial thiredoxin reductase, NADP+ B reduced izoalloxazine bending, oxidoreductase; HET: FAD NAP; 1.45A {Helicobacter pylori} PDB: 2q0k_A* 3ish_A*
Probab=68.60 E-value=9.7 Score=38.09 Aligned_cols=61 Identities=15% Similarity=0.041 Sum_probs=46.1
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhc
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLS 177 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~S 177 (749)
..+..++++++++.|.+|.-+ ++++.+|++.+. +|+..++.+ ..||+|.|..-...+|..+
T Consensus 188 l~~~~gv~v~~~~~v~~i~~~-~~~v~~v~~~~~~~g~~~~i~~-D~vi~a~G~~p~~~~l~~~ 249 (311)
T 2q0l_A 188 AKNNDKIEFLTPYVVEEIKGD-ASGVSSLSIKNTATNEKRELVV-PGFFIFVGYDVNNAVLKQE 249 (311)
T ss_dssp HHTCTTEEEETTEEEEEEEEE-TTEEEEEEEEETTTCCEEEEEC-SEEEECSCEEECCGGGBCT
T ss_pred HhhCCCeEEEeCCEEEEEECC-CCcEeEEEEEecCCCceEEEec-CEEEEEecCccChhhhhcc
Confidence 334578999999999999876 357788888752 677677888 8999999976555555444
No 111
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX), oxidative demethylation of N-methyl-L-tryptophan, FAD, flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Probab=67.57 E-value=4.7 Score=41.52 Aligned_cols=51 Identities=22% Similarity=0.210 Sum_probs=35.6
Q ss_pred hccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 115 AKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
.+++.+++|+.++.|++|..++ +++ .| ...+|+ ++| +.||+|+|+- |++|+
T Consensus 158 ~~~~~G~~i~~~~~V~~i~~~~-~~~-~v--~~~~g~---~~a-~~vV~a~G~~-s~~l~ 208 (372)
T 2uzz_A 158 LAKEAGCAQLFNCPVTAIRHDD-DGV-TI--ETADGE---YQA-KKAIVCAGTW-VKDLL 208 (372)
T ss_dssp HHHHTTCEEECSCCEEEEEECS-SSE-EE--EESSCE---EEE-EEEEECCGGG-GGGTS
T ss_pred HHHHCCCEEEcCCEEEEEEEcC-CEE-EE--EECCCe---EEc-CEEEEcCCcc-HHhhc
Confidence 3345689999999999999873 332 33 333553 778 8999999974 45544
No 112
>1wi1_A Calcium-dependent activator protein for secretion, CAPS; PH domain, PIP2 binding site, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.1
Probab=67.07 E-value=9.6 Score=35.56 Aligned_cols=34 Identities=24% Similarity=0.360 Sum_probs=23.8
Q ss_pred CCCceeEEEecccceEEEEecCChhhhhHHHHhee
Q psy3407 603 KSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 603 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
..+.|.|++--.--. .+|+|.+|.+.-+|++.|.
T Consensus 73 ~~~k~~F~~v~~~~t-y~~~Adseee~~~WikAi~ 106 (126)
T 1wi1_A 73 EGGRAFFNAVKEGDT-VIFASDDEQDRILWVQAMY 106 (126)
T ss_dssp CSCSSEEEEECSSCE-EEEECSSHHHHHHHHHHHH
T ss_pred ccCceEEEEecCCce-EEEEcCCHHHHHHHHHHHH
Confidence 357889987543333 5678888888888887664
No 113
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=66.80 E-value=5 Score=47.24 Aligned_cols=56 Identities=18% Similarity=0.164 Sum_probs=43.2
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
+++.+++|+.++.|++|..+ ++++++|+.. +| +++| +.||+|+|+- ++.|+...|+
T Consensus 161 a~~~Gv~i~~~t~V~~i~~~-~~~v~~V~t~--~G---~i~A-d~VV~AaG~~-s~~l~~~~g~ 216 (830)
T 1pj5_A 161 TESAGVTYRGSTTVTGIEQS-GGRVTGVQTA--DG---VIPA-DIVVSCAGFW-GAKIGAMIGM 216 (830)
T ss_dssp HHHTTCEEECSCCEEEEEEE-TTEEEEEEET--TE---EEEC-SEEEECCGGG-HHHHHHTTTC
T ss_pred HHHcCCEEECCceEEEEEEe-CCEEEEEEEC--Cc---EEEC-CEEEECCccc-hHHHHHHhCC
Confidence 34568999999999999987 4677787652 44 5888 8999999986 5777766664
No 114
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=66.75 E-value=11 Score=40.00 Aligned_cols=52 Identities=12% Similarity=0.042 Sum_probs=37.6
Q ss_pred hccCCCeEEEcccEEEEEEeCC--C-C--cEEEEEEEec----CC------eEEEEEe--------------ccEEEEcc
Q psy3407 115 AKFRENLIILKNTEVIKILIDS--K-L--KAYGVEYINS----QG------KICHVNS--------------TREVILSA 165 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~--g-g--rAtGV~y~d~----~G------~~~~V~A--------------rKeVILAA 165 (749)
+.+.+|++++.++.|+.|+.++ + + +++||..... +| ...++.| .+.||+|.
T Consensus 156 a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~AT 235 (326)
T 2gjc_A 156 VLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQAHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTT 235 (326)
T ss_dssp HHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHTC---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECC
T ss_pred HHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecccccceeccCceEEEEeeccccccccccccCCEEEECc
Confidence 4455799999999999999983 2 5 9999988531 23 2345777 47888888
Q ss_pred C
Q psy3407 166 G 166 (749)
Q Consensus 166 G 166 (749)
|
T Consensus 236 G 236 (326)
T 2gjc_A 236 G 236 (326)
T ss_dssp C
T ss_pred C
Confidence 8
No 115
>3pvc_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; structural genomics, PSI-biology; HET: FAD; 2.31A {Yersinia pestis} PDB: 3sgl_A*
Probab=66.74 E-value=3.8 Score=47.26 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=37.9
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhc
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLS 177 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~S 177 (749)
+++.|++|++++.|++|+.++ ++ ++|+. .+|. .+++| +.||+|+|+- ++.|+...
T Consensus 422 a~~~Gv~i~~~t~V~~l~~~~-~~-v~V~t--~~G~-~~i~A-d~VVlAtG~~-s~~l~~~~ 476 (689)
T 3pvc_A 422 AQQNGMTCHYQHELQRLKRID-SQ-WQLTF--GQSQ-AAKHH-ATVILATGHR-LPEWEQTH 476 (689)
T ss_dssp HHHTTCEEEESCCEEEEEECS-SS-EEEEE--C-CC-CCEEE-SEEEECCGGG-TTCSTTTT
T ss_pred HHhCCCEEEeCCeEeEEEEeC-Ce-EEEEe--CCCc-EEEEC-CEEEECCCcc-hhcccccc
Confidence 345689999999999999884 33 34443 2443 14778 8899999986 66555443
No 116
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=66.34 E-value=5.5 Score=43.30 Aligned_cols=55 Identities=15% Similarity=0.282 Sum_probs=39.4
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
.|...+++.+++|++++.|++|..+++ ++.+...+| .++| +.||+|+|+.-.|++
T Consensus 137 ~L~~~l~~~Gv~i~~~~~V~~i~~~~~----~~~V~~~~g---~i~a-d~VIlAtG~~S~p~~ 191 (417)
T 3v76_A 137 MLMAEMKEAGVQLRLETSIGEVERTAS----GFRVTTSAG---TVDA-ASLVVASGGKSIPKM 191 (417)
T ss_dssp HHHHHHHHHTCEEECSCCEEEEEEETT----EEEEEETTE---EEEE-SEEEECCCCSSCGGG
T ss_pred HHHHHHHHCCCEEEECCEEEEEEEeCC----EEEEEECCc---EEEe-eEEEECCCCccCCCC
Confidence 343434456899999999999988733 234443344 6788 899999999987753
No 117
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: AMP; 2.10A {Pyrococcus furiosus}
Probab=64.69 E-value=3.3 Score=43.98 Aligned_cols=51 Identities=20% Similarity=0.216 Sum_probs=38.9
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHh
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM 175 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL 175 (749)
.++.+.+|++++.|++|..+ ++++ | .. +|+ +++| +.||+|+|+-.+++||-
T Consensus 199 ~~~~G~~i~~~~~V~~i~~~-~~~v--V--~~-~g~--~~~a-d~Vv~a~~~~~~~~ll~ 249 (421)
T 3nrn_A 199 IMENKGKILTRKEVVEINIE-EKKV--Y--TR-DNE--EYSF-DVAISNVGVRETVKLIG 249 (421)
T ss_dssp HHTTTCEEESSCCEEEEETT-TTEE--E--ET-TCC--EEEC-SEEEECSCHHHHHHHHC
T ss_pred HHHCCCEEEcCCeEEEEEEE-CCEE--E--Ee-CCc--EEEe-CEEEECCCHHHHHHhcC
Confidence 44568999999999999987 4555 4 22 564 4677 89999999888887663
No 118
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2 b.55.1.2 PDB: 1irs_A*
Probab=63.99 E-value=6 Score=40.81 Aligned_cols=88 Identities=19% Similarity=0.239 Sum_probs=55.0
Q ss_pred cccccCceeEEecCCCCCCcceeeeccc-------eEEeecCCCC-------CCc-eeeEEeccchhhhcCCCceeEEEe
Q psy3407 548 QVFRSGNLMYKINDKSAWTPGFVNLQNG-------ILTVKEAPNS-------PKN-ISVIQCHSFSQVYDKSRPYTFKVN 612 (749)
Q Consensus 548 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~-------~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 612 (749)
.+..+|-|.-+ ..|..-|.-|.++ .|..-+.+.. |+. |.+-.|.+....-+..+++.|.+.
T Consensus 9 ~v~k~G~L~K~----K~WkkRwFVL~~~~~~G~~~~L~YYk~~~~~~~~~~~p~g~I~L~~~~~V~~~~~~~~~~~F~I~ 84 (264)
T 1qqg_A 9 DVRKVGYLRKP----KSMHKRFFVLRAASEAGGPARLEYYENEKKWRHKSSAPKRSIPLESCFNINKRADSKNKHLVALY 84 (264)
T ss_dssp CEEEEEEEECT----TTCCEEEEEEECCBTTTBSSEEEEESSHHHHHTTCSCCSEEEEGGGEEEEEEECCSSCSSEEEEE
T ss_pred CccEEEEEEEC----CCCEeEEEEEECCCCCCCCCEEEEECCCccccccccCcceEEEeeceEEEEeccCCCCCcEEEEE
Confidence 34455554322 3677777777665 6655444332 332 222235544445577889999998
Q ss_pred cccceEEEEecCChhhhhHHHHheeeEE
Q psy3407 613 FNPYSFVLFAAPDESQLFDWLQDIMISI 640 (749)
Q Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (749)
-+ -.-..|+|.+|.++-+|++.|.-.+
T Consensus 85 t~-~rty~l~A~se~e~~~Wi~aL~~~~ 111 (264)
T 1qqg_A 85 TR-DEHFAIAADSEAEQDSWYQALLQLH 111 (264)
T ss_dssp ES-SCEEEEECSSHHHHHHHHHHHHHHC
T ss_pred EC-CEEEEEEeCCHHHHHHHHHHHHHHH
Confidence 54 5555678899999999998876444
No 119
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase, inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A {Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A* 1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A* 3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A* 3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Probab=63.69 E-value=6.4 Score=40.72 Aligned_cols=53 Identities=23% Similarity=0.223 Sum_probs=36.5
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhc
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLS 177 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~S 177 (749)
+++.+++|+.++.|++|..++ +. +.+...+| .++| +.||+|+|+- ++.|+-..
T Consensus 160 ~~~~Gv~i~~~~~v~~i~~~~-~~---~~v~~~~g---~~~a-~~vV~A~G~~-~~~l~~~~ 212 (389)
T 2gf3_A 160 AEARGAKVLTHTRVEDFDISP-DS---VKIETANG---SYTA-DKLIVSMGAW-NSKLLSKL 212 (389)
T ss_dssp HHHTTCEEECSCCEEEEEECS-SC---EEEEETTE---EEEE-EEEEECCGGG-HHHHGGGG
T ss_pred HHHCCCEEEcCcEEEEEEecC-Ce---EEEEeCCC---EEEe-CEEEEecCcc-HHHHhhhh
Confidence 445689999999999999873 33 23333233 4788 8999999973 55555433
No 120
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=63.68 E-value=8.3 Score=38.62 Aligned_cols=60 Identities=12% Similarity=0.077 Sum_probs=46.6
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
++.++++++++.|.+|.-++ ...+|.+.+. +|+..++.+ ..||+|.|..-.+.+|..+|+
T Consensus 200 ~~~gv~~~~~~~v~~i~~~~--~~~~v~~~~~~~g~~~~~~~-D~vv~a~G~~p~~~~~~~~~~ 260 (332)
T 3lzw_A 200 HASKVNVLTPFVPAELIGED--KIEQLVLEEVKGDRKEILEI-DDLIVNYGFVSSLGPIKNWGL 260 (332)
T ss_dssp HHSSCEEETTEEEEEEECSS--SCCEEEEEETTSCCEEEEEC-SEEEECCCEECCCGGGGGSSC
T ss_pred hcCCeEEEeCceeeEEecCC--ceEEEEEEecCCCceEEEEC-CEEEEeeccCCCchHHhhcCc
Confidence 45689999999999998652 3678888773 566677888 899999997776667666664
No 121
>2xve_A Flavin-containing monooxygenase; oxidoreductase; HET: FAD; 1.99A {Methylophaga aminisulfidivorans} PDB: 2xvf_A* 2xvh_A* 2xvi_A* 2xvj_A* 2xlt_A* 2vqb_A* 2vq7_A* 2xlu_A* 2xlp_A* 2xls_A* 2xlr_A*
Probab=62.95 E-value=7 Score=42.73 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=47.0
Q ss_pred hhhhhhccCCCeE--EEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhcC
Q psy3407 110 AFLEPAKFRENLI--ILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLSG 178 (749)
Q Consensus 110 ayL~pa~~r~NLt--IlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~SG 178 (749)
.||....++-+++ |+.++.|++|..++++....|++.+. +|+..++.+ +.||+|.|....|+++-.-|
T Consensus 105 ~~l~~~~~~~gv~~~i~~~~~V~~v~~~~~~~~~~V~~~~~~~g~~~~~~~-d~VVvAtG~~s~p~~p~ipG 175 (464)
T 2xve_A 105 DYIKGRVEKAGVRKYIRFNTAVRHVEFNEDSQTFTVTVQDHTTDTIYSEEF-DYVVCCTGHFSTPYVPEFEG 175 (464)
T ss_dssp HHHHHHHHHHTCGGGEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-SEEEECCCSSSSBCCCCCBT
T ss_pred HHHHHHHHHcCCcceEEeCCEEEEEEEcCCCCcEEEEEEEcCCCceEEEEc-CEEEECCCCCCCCccCCCCC
Confidence 3554434444676 88999999998874322345666552 466667888 89999999888888765444
No 122
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=62.39 E-value=5.5 Score=39.10 Aligned_cols=56 Identities=16% Similarity=0.219 Sum_probs=39.8
Q ss_pred hhhhhhccC-CCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 110 AFLEPAKFR-ENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 110 ayL~pa~~r-~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
.+|....++ +|++++ ++.|++|..+ ++++++|... +|+ .++| +.||+|+|+.-.++
T Consensus 72 ~~l~~~~~~~~gv~i~-~~~v~~i~~~-~~~v~~v~~~--~g~--~i~a-~~VV~A~G~~s~~~ 128 (232)
T 2cul_A 72 ARAKYLLEGLRPLHLF-QATATGLLLE-GNRVVGVRTW--EGP--PARG-EKVVLAVGSFLGAR 128 (232)
T ss_dssp HHHHHHHHTCTTEEEE-ECCEEEEEEE-TTEEEEEEET--TSC--CEEC-SEEEECCTTCSSCE
T ss_pred HHHHHHHHcCCCcEEE-EeEEEEEEEe-CCEEEEEEEC--CCC--EEEC-CEEEECCCCChhhc
Confidence 344443444 599999 5799999887 4677787653 564 5778 89999999865444
No 123
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=62.33 E-value=14 Score=37.44 Aligned_cols=66 Identities=17% Similarity=0.083 Sum_probs=47.4
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
.|....++.++++++++.|.+|.-+ +++.+|++... +|+..++.+ ..||+|.|.--...+|..+|+
T Consensus 196 ~l~~~l~~~gv~v~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~-D~vi~a~G~~p~~~~l~~~~~ 262 (335)
T 2zbw_A 196 ELMKAHEEGRLEVLTPYELRRVEGD--ERVRWAVVFHNQTQEELALEV-DAVLILAGYITKLGPLANWGL 262 (335)
T ss_dssp HHHHHHHTTSSEEETTEEEEEEEES--SSEEEEEEEETTTCCEEEEEC-SEEEECCCEEEECGGGGGSCC
T ss_pred HHHhccccCCeEEecCCcceeEccC--CCeeEEEEEECCCCceEEEec-CEEEEeecCCCCchHhhhcce
Confidence 3444445678999999999999864 56888888754 576667888 899999996544445544443
No 124
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=59.96 E-value=6.8 Score=42.17 Aligned_cols=55 Identities=16% Similarity=0.264 Sum_probs=38.8
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCC---CCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDS---KLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~---ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
+|....++.+++|++++.|++|..++ +++ ..|+ ..+| +++| +.||+|+|+...|+
T Consensus 114 ~L~~~~~~~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~--~~~g---~i~a-d~VVlAtG~~s~p~ 171 (401)
T 2gqf_A 114 MLKSECDKYGAKILLRSEVSQVERIQNDEKVR-FVLQ--VNST---QWQC-KNLIVATGGLSMPG 171 (401)
T ss_dssp HHHHHHHHHTCEEECSCCEEEEEECCSCSSCC-EEEE--ETTE---EEEE-SEEEECCCCSSCGG
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEcccCcCCCe-EEEE--ECCC---EEEC-CEEEECCCCccCCC
Confidence 44444456789999999999998762 123 2333 3233 5788 89999999998876
No 125
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide, pleckst homology domain, guanine-nucleotide releasing factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Probab=58.85 E-value=17 Score=38.75 Aligned_cols=65 Identities=20% Similarity=0.241 Sum_probs=42.0
Q ss_pred ccccCceeEEecCCCCCCcceeeeccceEEeecCCCCCCceeeEEeccch--hhhcCCCceeEEEec
Q psy3407 549 VFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFS--QVYDKSRPYTFKVNF 613 (749)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 613 (749)
+.++|-|.-+=.....|..-|.-|.++.|..-+.+...+-..+|.-.+.+ .+-+..+|+.|++..
T Consensus 213 ~~k~G~L~K~g~~~k~WkkRwFVL~~~~L~Yyk~~~~~~p~G~I~L~~~~v~~~~~~~~~~~F~I~~ 279 (347)
T 2r09_A 213 PDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTTDKEPRGIIPLENLSIREVEDPRKPNCFELYN 279 (347)
T ss_dssp CCEEEEEEEECSSSCCEEEEEEEEETTEEEEESSTTCSSCSEEEECTTCEEEEECCSSCSSEEEEEC
T ss_pred cccCCeeEecCCCcccceeEEEEEcCCEEEEEcCCCccCCcEEEEcCCeEEEEccCCCCCCEEEEEe
Confidence 45667664332234679999999999999887777655544455433322 233567888888864
No 126
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1; guanine nucleotide exchange factor, guanine-nucleotide releasing factor, lipoprotein; 4.50A {Mus musculus}
Probab=57.56 E-value=6 Score=41.50 Aligned_cols=90 Identities=22% Similarity=0.365 Sum_probs=60.6
Q ss_pred ccccccCceeEEe-----c-------CCCCCCcceeeeccceEEeecCCC--------CCCc-eeeEEeccchh-hhc-C
Q psy3407 547 DQVFRSGNLMYKI-----N-------DKSAWTPGFVNLQNGILTVKEAPN--------SPKN-ISVIQCHSFSQ-VYD-K 603 (749)
Q Consensus 547 ~~~~~~~~~~~~~-----~-------~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~-~~~~~~~~~~~-~~~-~ 603 (749)
..|...|-|..|- . .+..|..=|+-|.++.|..-.... .|++ |++-.| .-+ ..| .
T Consensus 9 ~~v~k~G~L~rK~~l~~~k~~K~~~~~~r~Wkk~w~VLkg~~L~fYKde~~~~~~~~~~p~~~I~L~ga--~v~~a~d~~ 86 (279)
T 3a8n_A 9 GTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVPKHAVWVENS--IVQAVPEHP 86 (279)
T ss_dssp -CCSCEEEEEEEEEEEEETTTEEECCCCCCCEEEEEEEETTEECCBCCC--------CCCSSCCBCCSC--EECCCTTSS
T ss_pred CceeEEEEEEEEEEecccCCcccCCccCCCCeEEEEEEeCCEEEEEecccccccccccCCCceEeccCc--EEEeccccC
Confidence 3466677776541 1 246899999999999887643322 2332 333222 222 234 3
Q ss_pred CCceeEEEecccceEEEEecCChhhhhHHHHheee
Q psy3407 604 SRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIMI 638 (749)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 638 (749)
.+++.|++....-.-.+|.|+++.++-+|++.|.-
T Consensus 87 kKk~vF~L~t~~g~~yLFQA~s~eEm~~WI~aI~~ 121 (279)
T 3a8n_A 87 KKDFVFCLSNSLGDAFLFQTTSQTELENWITAIHS 121 (279)
T ss_dssp SSCSCCCEEETTTEEEECCCSCHHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCEEEEeCCCHHHHHHHHHHHHH
Confidence 57899999888778889999999999999998753
No 127
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=57.50 E-value=10 Score=40.60 Aligned_cols=60 Identities=18% Similarity=0.172 Sum_probs=40.7
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeC-CCCcEEEEEE--EecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILID-SKLKAYGVEY--INSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d-~ggrAtGV~y--~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
.|+....++-+.+|+.++.|++|..+ ++++..++.+ .+..|+..++++ +.||||.|+ +|+
T Consensus 131 ~~l~~~~~~~~~~i~~~~~V~~i~~~~~~~~~~~~~V~~~~g~g~~~~~~~-d~lVlAtG~--~p~ 193 (463)
T 3s5w_A 131 DYLRWVASHFQEQSRYGEEVLRIEPMLSAGQVEALRVISRNADGEELVRTT-RALVVSPGG--TPR 193 (463)
T ss_dssp HHHHHHHTTCTTTEEESEEEEEEEEEEETTEEEEEEEEEEETTSCEEEEEE-SEEEECCCC--EEC
T ss_pred HHHHHHHHHcCCeEEeCCEEEEEEEecCCCceEEEEEEEecCCCceEEEEe-CEEEECCCC--CCC
Confidence 34544445556889999999999876 2245544444 343466667888 889999997 554
No 128
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=55.64 E-value=13 Score=34.24 Aligned_cols=59 Identities=19% Similarity=0.117 Sum_probs=40.2
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
.++....++.+++++++ .|++|..+++ . +.+...+| ++++ +.||+|.|.- |.++...|+
T Consensus 60 ~~l~~~~~~~gv~v~~~-~v~~i~~~~~-~---~~v~~~~g---~i~a-d~vI~A~G~~--~~~~~~~g~ 118 (180)
T 2ywl_A 60 RRLEAHARRYGAEVRPG-VVKGVRDMGG-V---FEVETEEG---VEKA-ERLLLCTHKD--PTLPSLLGL 118 (180)
T ss_dssp HHHHHHHHHTTCEEEEC-CCCEEEECSS-S---EEEECSSC---EEEE-EEEEECCTTC--CHHHHHHTC
T ss_pred HHHHHHHHHcCCEEEeC-EEEEEEEcCC-E---EEEEECCC---EEEE-CEEEECCCCC--CCccccCCC
Confidence 34544455668999999 9999987633 2 23333355 5778 8999999975 666666665
No 129
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=54.95 E-value=5.3 Score=40.30 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=43.1
Q ss_pred hhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcC
Q psy3407 109 KAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSG 178 (749)
Q Consensus 109 ~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SG 178 (749)
..|+....++.+++++.++.|++|..+ +++.++|+ ..+| .+++ +.||+|.|+...|+++...|
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~v~~i~~~-~~~~~~v~--~~~g---~~~~-d~vV~AtG~~~~~~~~~~~g 141 (357)
T 4a9w_A 79 LAYLAQYEQKYALPVLRPIRVQRVSHF-GERLRVVA--RDGR---QWLA-RAVISATGTWGEAYTPEYQG 141 (357)
T ss_dssp HHHHHHHHHHTTCCEECSCCEEEEEEE-TTEEEEEE--TTSC---EEEE-EEEEECCCSGGGBCCCCCTT
T ss_pred HHHHHHHHHHcCCEEEcCCEEEEEEEC-CCcEEEEE--eCCC---EEEe-CEEEECCCCCCCCCCCCCCC
Confidence 345555555678999999999999887 34433343 3244 5777 88999999876666554444
No 130
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis, merohedral twinning, enzyme mechanism, hydroxylase, flavoprotein; HET: FAD VAK; 2.49A {Streptomyces purpurascens}
Probab=53.84 E-value=14 Score=40.77 Aligned_cols=56 Identities=13% Similarity=0.097 Sum_probs=38.7
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEE--EEEecCCeEEEEEeccEEEEccCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGV--EYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV--~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
+|...+++.|.+|+.++.|+.|+.++++++.+| ++.+.+| ..+++| +.||.|.|+-
T Consensus 125 ~L~~~a~~~gv~i~~~~~v~~i~~~~~~~~~~v~v~~~~~~~-~~~i~a-~~vV~AdG~~ 182 (535)
T 3ihg_A 125 ILLAQARKHGGAIRFGTRLLSFRQHDDDAGAGVTARLAGPDG-EYDLRA-GYLVGADGNR 182 (535)
T ss_dssp HHHHHHHHTTCEEESSCEEEEEEEECGGGCSEEEEEEEETTE-EEEEEE-EEEEECCCTT
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEECCCCccccEEEEEEcCCC-eEEEEe-CEEEECCCCc
Confidence 444433344899999999999998754443344 4444333 567888 8999999975
No 131
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Probab=53.16 E-value=21 Score=39.38 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=38.6
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
.|...+++.+++|+.++.|+.|..++ +.++ |++.+.+| ..+++| +.||.|.|+-
T Consensus 112 ~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~~~g-~~~~~a-~~vVgADG~~ 165 (499)
T 2qa2_A 112 VLEEWALGRGAELLRGHTVRALTDEG-DHVV-VEVEGPDG-PRSLTT-RYVVGCDGGR 165 (499)
T ss_dssp HHHHHHHHTTCEEEESCEEEEEEECS-SCEE-EEEECSSC-EEEEEE-EEEEECCCTT
T ss_pred HHHHHHHhCCCEEEcCCEEEEEEEeC-CEEE-EEEEcCCC-cEEEEe-CEEEEccCcc
Confidence 34333344579999999999998874 3444 66665445 467888 8899998874
No 132
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET: FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2 d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A* 1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A* 1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A* 1phh_A* ...
Probab=52.42 E-value=17 Score=37.94 Aligned_cols=51 Identities=8% Similarity=-0.006 Sum_probs=38.0
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCCh
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSP 171 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTP 171 (749)
+.+++|+.++.|++|..++++ ...|++.+ +|+..+++| +.||.|.|+--.-
T Consensus 115 ~~g~~i~~~~~v~~i~~~~~~-~~~v~~~~-~g~~~~~~a-~~vV~AdG~~S~v 165 (394)
T 1k0i_A 115 ACGATTVYQAAEVRLHDLQGE-RPYVTFER-DGERLRLDC-DYIAGCDGFHGIS 165 (394)
T ss_dssp HTTCEEESSCEEEEEECTTSS-SCEEEEEE-TTEEEEEEC-SEEEECCCTTCST
T ss_pred hcCCeEEeceeEEEEEEecCC-ceEEEEec-CCcEEEEEe-CEEEECCCCCcHH
Confidence 458999999999999876323 23466644 787677888 9999999975443
No 133
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Probab=51.72 E-value=20 Score=39.59 Aligned_cols=54 Identities=19% Similarity=0.126 Sum_probs=38.9
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
+|...+++.+++|+.++.|+.|..++ +.++ |++.+.+| ..+++| +.||.|.|+-
T Consensus 111 ~L~~~~~~~gv~v~~~~~v~~i~~~~-~~v~-v~~~~~~g-~~~~~a-~~vVgADG~~ 164 (500)
T 2qa1_A 111 HLEQWATGLGADIRRGHEVLSLTDDG-AGVT-VEVRGPEG-KHTLRA-AYLVGCDGGR 164 (500)
T ss_dssp HHHHHHHHTTCEEEETCEEEEEEEET-TEEE-EEEEETTE-EEEEEE-SEEEECCCTT
T ss_pred HHHHHHHHCCCEEECCcEEEEEEEcC-CeEE-EEEEcCCC-CEEEEe-CEEEECCCcc
Confidence 34333344579999999999998874 3444 66766445 467888 9999999975
No 134
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB prenylation, post-translational modification, protein binding/protein transport complex; HET: GER GDP PG4; 2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB: 1vg9_A* 1ltx_R*
Probab=51.62 E-value=14 Score=43.10 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=36.1
Q ss_pred hccCCCeEEEcccEEEEEEeCCC-CcEEEEEEEecCCeEEEEEeccEEEEccCC
Q psy3407 115 AKFRENLIILKNTEVIKILIDSK-LKAYGVEYINSQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~RIl~d~g-grAtGV~y~d~~G~~~~V~ArKeVILAAGA 167 (749)
+.+..|.+|++++.|.+|+++++ ++|+||. ..+|+ +++| +.||..+..
T Consensus 387 ~~~~~Gg~i~l~~~V~~I~~~~~~g~v~gV~--~~~Ge--~i~A-~~VVs~~~~ 435 (650)
T 1vg0_A 387 MCAVFGGIYCLRHSVQCLVVDKESRKCKAVI--DQFGQ--RIIS-KHFIIEDSY 435 (650)
T ss_dssp HHHHTTCEEESSCCEEEEEEETTTCCEEEEE--ETTSC--EEEC-SEEEEEGGG
T ss_pred HHHHcCCEEEeCCEeeEEEEeCCCCeEEEEE--eCCCC--EEEc-CEEEEChhh
Confidence 34566789999999999999843 8999988 33676 4677 778775553
No 135
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; structural genomics, PSI-2, protein structur initiative; 2.30A {Desulfovibrio vulgaris}
Probab=50.56 E-value=17 Score=39.34 Aligned_cols=62 Identities=18% Similarity=0.251 Sum_probs=44.8
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
.+....++.|+++++++.|.+|.-+ +++++ |.+. +|+ ++.+ ..||+|+|..-...||..+|+
T Consensus 207 ~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v~-v~~~--~g~--~i~a-D~Vv~a~G~~p~~~l~~~~gl 268 (472)
T 3iwa_A 207 MLRHDLEKNDVVVHTGEKVVRLEGE-NGKVA-RVIT--DKR--TLDA-DLVILAAGVSPNTQLARDAGL 268 (472)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEES-SSBEE-EEEE--SSC--EEEC-SEEEECSCEEECCHHHHHHTC
T ss_pred HHHHHHHhcCCEEEeCCEEEEEEcc-CCeEE-EEEe--CCC--EEEc-CEEEECCCCCcCHHHHHhCCc
Confidence 3444456678999999999999875 45555 5553 565 5677 899999998755567766665
No 136
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G* 3cpi_G 3cph_G 3cpj_G*
Probab=50.12 E-value=8.8 Score=41.70 Aligned_cols=46 Identities=15% Similarity=0.008 Sum_probs=36.2
Q ss_pred cCCCeEEEcccEEEEEEeCC-CCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 117 FRENLIILKNTEVIKILIDS-KLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~-ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
++.+.+|++++.|++|+.+. +++++||+. +|+ .++| +.||+|+|..
T Consensus 253 ~~~G~~i~~~~~V~~i~~~~~~~~~~~V~~---~g~--~~~a-d~VV~a~~~~ 299 (453)
T 2bcg_G 253 AIYGGTYMLDTPIDEVLYKKDTGKFEGVKT---KLG--TFKA-PLVIADPTYF 299 (453)
T ss_dssp HHTTCEEECSCCCCEEEEETTTTEEEEEEE---TTE--EEEC-SCEEECGGGC
T ss_pred HHcCCEEECCCEEEEEEEECCCCeEEEEEE---CCe--EEEC-CEEEECCCcc
Confidence 44578999999999999872 468888875 454 4678 8899999976
No 137
>2bry_A NEDD9 interacting protein with calponin homology and LIM domains; transport, coiled coil, cytoskeleton, FAD, flavoprotein, metal-binding, zinc; HET: FAD; 1.45A {Mus musculus} PDB: 2c4c_A* 2bra_A*
Probab=49.85 E-value=5 Score=44.41 Aligned_cols=61 Identities=11% Similarity=0.076 Sum_probs=43.3
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCC-CCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDS-KLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~-ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
+|...+++.|++|+.++.|+.|..++ ++...+|++.+. +|+...++| +.||+|.|+-..++
T Consensus 171 ~L~~~~~~~gv~v~~~~~v~~i~~~~~~~~~~~v~~~~~~~g~~~~i~a-d~VV~A~G~~S~~r 233 (497)
T 2bry_A 171 LLLKVALLLGVEIHWGVKFTGLQPPPRKGSGWRAQLQPNPPAQLASYEF-DVLISAAGGKFVPE 233 (497)
T ss_dssp HHHHHHHHTTCEEEESCEEEEEECCCSTTCCBEEEEESCCCHHHHTCCB-SEEEECCCTTCCCT
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEecCCCCEEEEEEEECCCCCEEEEEc-CEEEECCCCCcccc
Confidence 34343445789999999999998752 244567777543 554345788 99999999877664
No 138
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=49.76 E-value=14 Score=40.40 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=38.4
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGA 167 (749)
+|...+.+.|++++.+ .|++|..++++++++|+.. +|+ +++| +.||.|.|+
T Consensus 178 ~L~~~a~~~gv~~~~~-~v~~i~~~~~~~~~~v~~~--~g~--~~~a-d~vV~A~G~ 228 (511)
T 2weu_A 178 YLSEYAIARGVRHVVD-DVQHVGQDERGWISGVHTK--QHG--EISG-DLFVDCTGF 228 (511)
T ss_dssp HHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEES--SSC--EEEC-SEEEECCGG
T ss_pred HHHHHHHHCCCEEEEC-eEeEEEEcCCCCEEEEEEC--CCC--EEEc-CEEEECCCc
Confidence 4444344578999999 9999998655677888763 564 5788 999999995
No 139
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: ADP; 2.40A {Deinococcus radiodurans R1}
Probab=48.97 E-value=8.3 Score=40.98 Aligned_cols=56 Identities=20% Similarity=0.267 Sum_probs=35.5
Q ss_pred hccCCCeEEEcccEEE---------EEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHh-hcCC
Q psy3407 115 AKFRENLIILKNTEVI---------KILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLM-LSGI 179 (749)
Q Consensus 115 a~~r~NLtIlT~a~V~---------RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL-~SGI 179 (749)
.+++.+++|+.++.|+ +|..+ ++++ +|+. .+| .++| +.||+|+|+- |+.|+- ..|+
T Consensus 181 ~~~~~Gv~i~~~~~v~~~~g~~~~~~i~~~-~~~v-~v~~--~~g---~i~a-~~VV~A~G~~-s~~l~~~~~g~ 246 (405)
T 3c4n_A 181 QAIGQGAGLLLNTRAELVPGGVRLHRLTVT-NTHQ-IVVH--ETR---QIRA-GVIIVAAGAA-GPALVEQGLGL 246 (405)
T ss_dssp HHHTTTCEEECSCEEEEETTEEEEECBCC---------CB--CCE---EEEE-EEEEECCGGG-HHHHHHHHHCC
T ss_pred HHHHCCCEEEcCCEEEeccccccccceEee-CCeE-EEEE--CCc---EEEC-CEEEECCCcc-HHHHHHHhcCC
Confidence 3445689999999999 77665 3444 5543 133 5888 8999999974 667766 5554
No 140
>2qae_A Lipoamide, dihydrolipoyl dehydrogenase; FAD-cystine-oxidoreductase, homodimer; HET: FAD; 1.90A {Trypanosoma cruzi}
Probab=48.10 E-value=23 Score=38.31 Aligned_cols=66 Identities=18% Similarity=0.097 Sum_probs=43.1
Q ss_pred hhhhhc-cCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH--HhhcCC
Q psy3407 111 FLEPAK-FRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL--LMLSGI 179 (749)
Q Consensus 111 yL~pa~-~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL--LL~SGI 179 (749)
++.... ++.++++++++.|.+|.-++ +. ..|++.+.+|+..++.+ ..||+|+|..-...+ |...|+
T Consensus 220 ~l~~~l~~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~~~~g~~~~i~~-D~vv~a~G~~p~~~~l~l~~~gl 288 (468)
T 2qae_A 220 ALVGALAKNEKMKFMTSTKVVGGTNNG-DS-VSLEVEGKNGKRETVTC-EALLVSVGRRPFTGGLGLDKINV 288 (468)
T ss_dssp HHHHHHHHHTCCEEECSCEEEEEEECS-SS-EEEEEECC---EEEEEE-SEEEECSCEEECCTTSCHHHHTC
T ss_pred HHHHHHhhcCCcEEEeCCEEEEEEEcC-Ce-EEEEEEcCCCceEEEEC-CEEEECCCcccCCCCCCchhcCC
Confidence 444445 67789999999999998763 33 34555432465566888 899999997655555 444454
No 141
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=48.00 E-value=39 Score=36.49 Aligned_cols=89 Identities=17% Similarity=0.244 Sum_probs=59.0
Q ss_pred ccccccCceeEEecCC--CCCCcceeeeccceEEeecCCCCCCceeeEEeccchhhh-----------cCCCceeEEEec
Q psy3407 547 DQVFRSGNLMYKINDK--SAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVY-----------DKSRPYTFKVNF 613 (749)
Q Consensus 547 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~ 613 (749)
..+.++|-|. |-..+ ..|..-|.-|.++.|..-..+...+-..+|.--+-..+| ++.++|.|.|..
T Consensus 267 ~~~~k~G~L~-K~g~~~~k~WKkRwFVL~~~~L~YYk~~~d~~~~G~I~L~~~~~~~~v~~~~~~~~~~~~~~~~F~I~t 345 (386)
T 3lju_X 267 RNYLKEGYME-KTGPKQTEGFRKRWFTMDDRRLMYFKDPLDAFARGEVFIGSKESGYTVLHGFPPSTQGHHWPHGITIVT 345 (386)
T ss_dssp CCCSEEEEEE-ECCTTSCSCCEEEEEEEETTEEEEESSTTCSBCSEEEECCCGGGTCEEEESCCTTCCSCCSCEEEEEEC
T ss_pred cccceeeeEE-EECCCCCCCCcccEEEEECCEEEEEecCCCcccceEEEeecceeeeeecccCCccccccCCCcEEEEEe
Confidence 4566777665 44332 579999999999999988777776555555554443432 112379999875
Q ss_pred ccceEEEEecCChhhhhHHHHhee
Q psy3407 614 NPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 614 ~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
.--.| .|.|++|.+.-+|++.|.
T Consensus 346 ~~rty-~l~A~s~~e~~~Wi~aL~ 368 (386)
T 3lju_X 346 PDRKF-LFACETESDQREWVAAFQ 368 (386)
T ss_dssp SSCEE-EEEESSHHHHHHHHHHHH
T ss_pred CCeEE-EEEcCCHHHHHHHHHHHH
Confidence 54444 456778888888887664
No 142
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent N-hydroxylating monooxygenase, CLAS flavin dependent monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A {Pseudomonas aeruginosa} PDB: 3s61_A*
Probab=47.90 E-value=34 Score=36.60 Aligned_cols=49 Identities=14% Similarity=0.105 Sum_probs=39.0
Q ss_pred CCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCC
Q psy3407 119 ENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 119 ~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeT 170 (749)
.+++|++++.|++|.-++ + ...|++.+. +|+..++.+ ..||+|.|..-.
T Consensus 329 ~~v~i~~~~~v~~v~~~~-~-~~~v~~~~~~~g~~~~~~~-D~Vv~AtG~~p~ 378 (463)
T 3s5w_A 329 PRHAFRCMTTVERATATA-Q-GIELALRDAGSGELSVETY-DAVILATGYERQ 378 (463)
T ss_dssp CCSEEETTEEEEEEEEET-T-EEEEEEEETTTCCEEEEEE-SEEEECCCEECC
T ss_pred CCeEEEeCCEEEEEEecC-C-EEEEEEEEcCCCCeEEEEC-CEEEEeeCCCCC
Confidence 689999999999998763 2 355777654 677778888 999999997755
No 143
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=47.85 E-value=21 Score=37.36 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=34.0
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEE-EEEEEecCCeEEEEEeccEEEEccCCCC
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAY-GVEYINSQGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAt-GV~y~d~~G~~~~V~ArKeVILAAGAIe 169 (749)
.+|++|+.++.|++|..++ ++++ .|++ .+|+ +++| +.||.|.|+--
T Consensus 120 ~~gv~i~~~~~v~~i~~~~-~~v~g~v~~--~~g~--~~~a-d~vV~AdG~~s 166 (399)
T 2x3n_A 120 EATVEMLFETRIEAVQRDE-RHAIDQVRL--NDGR--VLRP-RVVVGADGIAS 166 (399)
T ss_dssp CTTEEEECSCCEEEEEECT-TSCEEEEEE--TTSC--EEEE-EEEEECCCTTC
T ss_pred cCCcEEEcCCEEEEEEEcC-CceEEEEEE--CCCC--EEEC-CEEEECCCCCh
Confidence 3489999999999998873 4454 4544 2565 5778 88999999643
No 144
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase, rossmann, flavoprotein, alternative initiati mitochondrion, NADP; HET: FAD; 1.75A {Drosophila melanogaster} PDB: 2nvk_X* 3dh9_A*
Probab=44.99 E-value=31 Score=37.55 Aligned_cols=62 Identities=18% Similarity=0.162 Sum_probs=44.0
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
.+...+++.+++|++++.|.+|.-++++++ .|++.+. +|+..++.+ ..||+|.|..-...+|
T Consensus 232 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~-~v~~~~~~~~~~~~~~~-D~vi~a~G~~p~~~~l 294 (483)
T 3dgh_A 232 LVAASMEERGIPFLRKTVPLSVEKQDDGKL-LVKYKNVETGEESEDVY-DTVLWAIGRKGLVDDL 294 (483)
T ss_dssp HHHHHHHHTTCCEEETEEEEEEEECTTSCE-EEEEEETTTCCEEEEEE-SEEEECSCEEECCGGG
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEcCCCcE-EEEEecCCCCceeEEEc-CEEEECcccccCcCcC
Confidence 333445567899999999999987644443 4777664 356677888 8999999975444444
No 145
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase, complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas testosteroni} PDB: 2dki_A*
Probab=44.89 E-value=26 Score=40.03 Aligned_cols=54 Identities=20% Similarity=0.167 Sum_probs=39.7
Q ss_pred ccCC-CeEEEcccEEEEEEeCCC--CcEEEEEEEe----cCCeEEEEEeccEEEEccCCCCC
Q psy3407 116 KFRE-NLIILKNTEVIKILIDSK--LKAYGVEYIN----SQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 116 ~~r~-NLtIlT~a~V~RIl~d~g--grAtGV~y~d----~~G~~~~V~ArKeVILAAGAIeT 170 (749)
.+.+ +++|+.++.|+.|..+++ +..+.|++.+ .+|...+++| +.||.|.|+--+
T Consensus 152 ~~~g~~v~v~~~~~v~~l~~~~~~~~~~v~v~~~~~~~~~~G~~~~i~a-~~vVgADG~~S~ 212 (639)
T 2dkh_A 152 RNSPSRLEPHYARRVLDVKVDHGAADYPVTVTLERCDAAHAGQIETVQA-RYVVGCDGARSN 212 (639)
T ss_dssp HHSTTCCCCBCSEEEEEEEECTTCSSCCEEEEEEECSGGGTTCEEEEEE-EEEEECCCTTCH
T ss_pred HhCCCCcEEecCCEEEEEEECCCCCcCCEEEEEEeccccCCCCeEEEEe-CEEEECCCcchH
Confidence 3445 669999999999998742 2345577765 3677778999 999999997543
No 146
>4a6h_A Phosphatidylinositol 4,5-bisphosphate-binding Pro SLM1; signaling protein; HET: I4C; 1.45A {Saccharomyces cerevisiae} PDB: 3nsu_A* 4a6f_A* 4a6k_A* 4a6f_B* 4a5k_A
Probab=44.72 E-value=57 Score=29.41 Aligned_cols=87 Identities=18% Similarity=0.288 Sum_probs=46.2
Q ss_pred ccccCceeEEecCCCCCCcceeeeccceEEe-ecCC----CCCCc-eeeEEeccchhhhcC-C--------CceeEEEec
Q psy3407 549 VFRSGNLMYKINDKSAWTPGFVNLQNGILTV-KEAP----NSPKN-ISVIQCHSFSQVYDK-S--------RPYTFKVNF 613 (749)
Q Consensus 549 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~-~~~~~~~~~~~~~~~-~--------~~~~~~~~~ 613 (749)
+.++|-|.-+=.-...|.++|.-|....|.. |... ..|.. |.+--|.--. +-+. + +++.|.+..
T Consensus 6 ~~k~G~L~Kk~~~~k~W~~rwfVL~~~~L~yyK~~~~~~d~~P~gsI~L~~c~v~~-~~~~~~~~~~~~~~~~~~F~i~~ 84 (120)
T 4a6h_A 6 EIKSGFLERRSKFLKSYSKGYYVLTPNFLHEFKTADRKKDLVPVMSLALSECTVTE-HSRKNSTSSPNSTGSDAKFVLHA 84 (120)
T ss_dssp CSEEEEEEEEETTTTEEEEEEEEECSSEEEEESSCCTTTCCSCSEEEEGGGEEEEE-ECCCCC---------CCEEEEEE
T ss_pred ccEEEEEEEcCCCCCCCccEEEEEeCCEEEEEcCCCcCcCCCceEEEECCCCEEEE-cccccccccccccCCCcEEEEEe
Confidence 4455655555545567888877776666553 3221 11222 2221221110 1111 1 566776665
Q ss_pred ccc------eEEEEecCChhhhhHHHHhe
Q psy3407 614 NPY------SFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 614 ~~~------~~~~~~~~~~~~~~~~~~~~ 636 (749)
..- .-..|.|.++.+.-+|+++|
T Consensus 85 ~~~~~~~~~~~y~f~A~s~~e~~~Wv~aI 113 (120)
T 4a6h_A 85 KQNGIIRRGHNWVFKADSYESMMSWFDNL 113 (120)
T ss_dssp SSSSSSCTTCEEEEECSSHHHHHHHHHHH
T ss_pred CCCCcccCceEEEEEcCCHHHHHHHHHHH
Confidence 442 35677888888888998876
No 147
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=44.28 E-value=27 Score=40.54 Aligned_cols=46 Identities=22% Similarity=0.322 Sum_probs=35.7
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCC
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeT 170 (749)
.+|++|+. ..|+.|..+ +++++||... +|. .++| +.||+|+|+.-.
T Consensus 130 ~~GV~I~~-~~V~~L~~d-~g~V~GV~t~--~G~--~i~A-d~VVLATG~~s~ 175 (641)
T 3cp8_A 130 EPNIDLLQ-DTVIGVSAN-SGKFSSVTVR--SGR--AIQA-KAAILACGTFLN 175 (641)
T ss_dssp CTTEEEEE-CCEEEEEEE-TTEEEEEEET--TSC--EEEE-EEEEECCTTCBT
T ss_pred CCCCEEEe-eEEEEEEec-CCEEEEEEEC--CCc--EEEe-CEEEECcCCCCC
Confidence 47999964 589999887 5688898763 564 5778 889999998643
No 148
>2fjl_A 1-phosphatidylinositol-4,5-bisphosphate phosphodiesterase gamma 1; beta-barrel, hydrolase; NMR {Rattus norvegicus} SCOP: b.55.1.1
Probab=44.28 E-value=36 Score=32.62 Aligned_cols=34 Identities=24% Similarity=0.448 Sum_probs=25.3
Q ss_pred CCCceeEEEecc-c-ceEEEEecCChhhhhHHHHhe
Q psy3407 603 KSRPYTFKVNFN-P-YSFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 603 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~ 636 (749)
..+||.|+|.+. + ..-+.|||....+++||++.|
T Consensus 108 ~~~~~vF~I~~~~~~~~~~~laAds~Eem~dW~kaI 143 (150)
T 2fjl_A 108 NNRLFVFSISMPSVAQWSLDVAADSQEELQDWVKKI 143 (150)
T ss_dssp SSCSCEEEEECTTTSSCCEEEEESSHHHHHHHHHHH
T ss_pred CCCceEEEEeCCCCCCceEEEEeCCHHHHHHHHHHH
Confidence 358999999774 1 223567888888999998865
No 149
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H, structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia psychrerythraea}
Probab=43.13 E-value=40 Score=36.99 Aligned_cols=54 Identities=15% Similarity=0.123 Sum_probs=39.2
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
.++. ++|++++.|.+|..++ ++++ |++.+.+|+..++.+ ..||+|.|..-...+
T Consensus 225 l~~~-V~i~~~~~v~~i~~~~-~~v~-v~~~~~~G~~~~i~~-D~Vi~a~G~~p~~~~ 278 (492)
T 3ic9_A 225 FNEE-FYFDAKARVISTIEKE-DAVE-VIYFDKSGQKTTESF-QYVLAATGRKANVDK 278 (492)
T ss_dssp HHTT-SEEETTCEEEEEEECS-SSEE-EEEECTTCCEEEEEE-SEEEECSCCEESCSS
T ss_pred HhhC-cEEEECCEEEEEEEcC-CEEE-EEEEeCCCceEEEEC-CEEEEeeCCccCCCC
Confidence 3444 9999999999998763 3443 555544676677888 899999997644444
No 150
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis baeyer-villiger oxidation green CH monooxygenase, oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP} PDB: 3gwd_A* 3ucl_A*
Probab=42.97 E-value=13 Score=41.87 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=45.7
Q ss_pred hhhhhhhccCCCe--EEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 109 KAFLEPAKFRENL--IILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 109 ~ayL~pa~~r~NL--tIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
..|+....++-++ +|+.++.|+++..++++....|+. .+|+ ++++ +.||+|.|+...|++.-.-|+
T Consensus 90 ~~~l~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~~~V~~--~~G~--~i~a-d~lV~AtG~~s~p~~p~ipG~ 157 (540)
T 3gwf_A 90 LEYLEDVVDRFDLRRHFKFGTEVTSALYLDDENLWEVTT--DHGE--VYRA-KYVVNAVGLLSAINFPNLPGL 157 (540)
T ss_dssp HHHHHHHHHHTTCGGGEEESCCEEEEEEETTTTEEEEEE--TTSC--EEEE-EEEEECCCSCCSBCCCCCTTG
T ss_pred HHHHHHHHHHcCCcceeEeccEEEEEEEeCCCCEEEEEE--cCCC--EEEe-CEEEECCcccccCCCCCCCCc
Confidence 3455554555567 899999999999884434444444 3565 4677 889999999888877655543
No 151
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, transferase; NMR {Homo sapiens}
Probab=42.74 E-value=70 Score=30.01 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=16.5
Q ss_pred ccCCCchhhhhHHHHHhhheeecC
Q psy3407 653 FAAPDESQLFDWLQDIMISIKIND 676 (749)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~ 676 (749)
|.|++|.+.-+|++.++..|+.|.
T Consensus 101 l~A~s~~e~~~Wi~aL~~~i~~n~ 124 (164)
T 2lul_A 101 IFAPSPQSRDLWVKKLKEEIKNNN 124 (164)
T ss_dssp EECSSHHHHHHHHHHHHHHHTTCS
T ss_pred EECCCHHHHHHHHHHHHHHHHHCh
Confidence 456666667777777777777663
No 152
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution, hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3 d.16.1.6 PDB: 1lv0_A* 1gnd_A
Probab=42.39 E-value=7.9 Score=41.86 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=36.0
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
++.+.+|++++.|++|..+ ++++++|.. +|+ +++| +.||+|+|..
T Consensus 245 ~~~G~~i~~~~~V~~I~~~-~~~v~~v~~---~g~--~~~a-d~VV~a~~~~ 289 (433)
T 1d5t_A 245 AIYGGTYMLNKPVDDIIME-NGKVVGVKS---EGE--VARC-KQLICDPSYV 289 (433)
T ss_dssp HHHTCCCBCSCCCCEEEEE-TTEEEEEEE---TTE--EEEC-SEEEECGGGC
T ss_pred HHcCCEEECCCEEEEEEEe-CCEEEEEEE---CCe--EEEC-CEEEECCCCC
Confidence 3457899999999999987 578888873 564 4678 8999999876
No 153
>2gv8_A Monooxygenase; FMO, FAD, NADPH, cofactor complex, PSI, structura genomics, protein structure initiative; HET: FAD NDP; 2.10A {Schizosaccharomyces pombe} SCOP: c.3.1.5 c.3.1.5 PDB: 2gvc_A* 1vqw_A*
Probab=42.33 E-value=23 Score=38.01 Aligned_cols=66 Identities=18% Similarity=0.160 Sum_probs=43.7
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCe-EEEEEeccEEEEccCCCCChHHHhhcC
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGK-ICHVNSTREVILSAGAVGSPQLLMLSG 178 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~-~~~V~ArKeVILAAGAIeTPrLLL~SG 178 (749)
.||....++-+..|+.++.|++|..++ + ...|++.+. +|+ ..++.+ +.||+|.|+...|++.-..|
T Consensus 119 ~~l~~~~~~~~~~i~~~t~V~~v~~~~-~-~~~V~~~~~~~G~~~~~~~~-d~VVvAtG~~s~p~~p~i~G 186 (447)
T 2gv8_A 119 EYQRIYAQPLLPFIKLATDVLDIEKKD-G-SWVVTYKGTKAGSPISKDIF-DAVSICNGHYEVPYIPNIKG 186 (447)
T ss_dssp HHHHHHHGGGGGGEECSEEEEEEEEET-T-EEEEEEEESSTTCCEEEEEE-SEEEECCCSSSSBCBCCCBT
T ss_pred HHHHHHHHHhhCeEEeCCEEEEEEeCC-C-eEEEEEeecCCCCeeEEEEe-CEEEECCCCCCCCCCCCCCC
Confidence 455443333356788899999997763 3 234555541 365 556778 89999999988887654444
No 154
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural genomics consortium, GTPase activation, SGC, binding, nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens} PDB: 3feh_A* 3fm8_C 3mdb_C*
Probab=41.96 E-value=30 Score=37.37 Aligned_cols=88 Identities=16% Similarity=0.347 Sum_probs=57.8
Q ss_pred cccCceeEEecCCCCCCcceeee--ccceEEeecCCCCCCceeeEEeccchhhh---cCCCceeEEEec---ccceEEEE
Q psy3407 550 FRSGNLMYKINDKSAWTPGFVNL--QNGILTVKEAPNSPKNISVIQCHSFSQVY---DKSRPYTFKVNF---NPYSFVLF 621 (749)
Q Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~---~~~~~~~~ 621 (749)
.++|-|+-+=.....|..-+.-| .++.|..-+.+...+-..+|.-.....+. +..+|+.|.++| ++---..|
T Consensus 147 ~keG~L~KrG~~~k~WkrRwFVL~~~~~~L~Yy~~~~~~~p~g~I~L~~~~~~~~~~~~~~~~~f~I~~~~~~~~R~y~l 226 (386)
T 3lju_X 147 YREGFLWKRGRDNGQFLSRKFVLTEREGALKYFNRNDAKEPKAVMKIEHLNATFQPAKIGHPHGLQVTYLKDNSTRNIFI 226 (386)
T ss_dssp EEEEEEEEECSSSCCEEEEEEEEETTTTEEEEEC-----CCSEEEEGGGEEEEECHHHHTSTTCEEEEEEETTEEEEEEE
T ss_pred ccccceeeeccccCCceEEEEEEEcCCCEEEEECCCCccCcccEEEeeccEEEEcccccCCCceEEEEEecCCCceEEEE
Confidence 46777766666667888888888 78888775555443333444333333333 346899999987 55555677
Q ss_pred ecCChhhhhHHHHhee
Q psy3407 622 AAPDESQLFDWLQDIM 637 (749)
Q Consensus 622 ~~~~~~~~~~~~~~~~ 637 (749)
.|.++.+.-+|++.|.
T Consensus 227 ~A~s~~e~~~Wi~aIr 242 (386)
T 3lju_X 227 YHEDGKEIVDWFNALR 242 (386)
T ss_dssp ECSSHHHHHHHHHHHH
T ss_pred EcCCHHHHHHHHHhhh
Confidence 8999999999998874
No 155
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex, pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A {Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1jeh_A*
Probab=41.07 E-value=35 Score=36.92 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=41.2
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
++....++.|+++++++.|.+|.-+++++...|++.+. +|....+.+ ..||+|.|..-...
T Consensus 229 ~l~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~~~~~-D~vv~a~G~~p~~~ 290 (478)
T 1v59_A 229 ATQKFLKKQGLDFKLSTKVISAKRNDDKNVVEIVVEDTKTNKQENLEA-EVLLVAVGRRPYIA 290 (478)
T ss_dssp HHHHHHHHTTCEEECSEEEEEEEEETTTTEEEEEEEETTTTEEEEEEE-SEEEECSCEEECCT
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEecCCCeEEEEEEEcCCCCceEEEC-CEEEECCCCCcCCC
Confidence 44444556789999999999998621234556766532 344566788 89999999654333
No 156
>1q1r_A Putidaredoxin reductase; glutathione reductase fold, oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Probab=41.06 E-value=18 Score=39.04 Aligned_cols=64 Identities=19% Similarity=0.185 Sum_probs=46.2
Q ss_pred hhhhccCCCeEEEcccEEEEEEeC-CCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCCC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILID-SKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIG 180 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d-~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIG 180 (749)
+....++.|+++++++.|.+|.-+ +++++++|++. +|+ .+.+ ..||+|.|..-...||..+|+-
T Consensus 197 l~~~l~~~GV~i~~~~~v~~i~~~~~~~~v~~v~~~--~G~--~i~~-D~Vv~a~G~~p~~~l~~~~gl~ 261 (431)
T 1q1r_A 197 YEHLHREAGVDIRTGTQVCGFEMSTDQQKVTAVLCE--DGT--RLPA-DLVIAGIGLIPNCELASAAGLQ 261 (431)
T ss_dssp HHHHHHHHTCEEECSCCEEEEEECTTTCCEEEEEET--TSC--EEEC-SEEEECCCEEECCHHHHHTTCC
T ss_pred HHHHHHhCCeEEEeCCEEEEEEeccCCCcEEEEEeC--CCC--EEEc-CEEEECCCCCcCcchhhccCCC
Confidence 333445668999999999999862 24678788763 564 4667 8999999976555677777753
No 157
>4b63_A L-ornithine N5 monooxygenase; oxidoreductase, siderophore, flavin; HET: FAD NAP; 1.90A {Aspergillus fumigatus} PDB: 4b64_A* 4b65_A* 4b66_A* 4b67_A* 4b68_A* 4b69_A*
Probab=40.96 E-value=28 Score=38.45 Aligned_cols=57 Identities=16% Similarity=0.277 Sum_probs=41.0
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCC------cEEEEEEEec-CCeEEEEEeccEEEEccCC
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKL------KAYGVEYINS-QGKICHVNSTREVILSAGA 167 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~gg------rAtGV~y~d~-~G~~~~V~ArKeVILAAGA 167 (749)
.||..++++=+..|+.++.|++|..++.+ ...-|+..+. +|+..++.| +.||+|.|.
T Consensus 149 ~Yl~~~A~~~~~~vrf~~~V~~v~~~~~~~~~~~~~~~~V~~~~~~~g~~~~~~a-r~vVlatG~ 212 (501)
T 4b63_A 149 DYMRWCAQQFSDVVAYGEEVVEVIPGKSDPSSSVVDFFTVRSRNVETGEISARRT-RKVVIAIGG 212 (501)
T ss_dssp HHHHHHHHTTGGGEEESEEEEEEEEECSSTTSSCBCEEEEEEEETTTCCEEEEEE-EEEEECCCC
T ss_pred HHHHHHHHHcCCceEcceEEEeeccccccccccccceEEEEEecCCCceEEEEEe-CEEEECcCC
Confidence 46665555555679999999999875221 2455666664 577888899 999999993
No 158
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=39.86 E-value=17 Score=40.49 Aligned_cols=51 Identities=14% Similarity=0.133 Sum_probs=37.5
Q ss_pred hhhhhccC-CCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCC
Q psy3407 111 FLEPAKFR-ENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 111 yL~pa~~r-~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGA 167 (749)
+|...+++ +|++++.+ .|++|..++++++++|+.. +|+ +++| +.||+|.|+
T Consensus 199 ~L~~~~~~~~Gv~i~~~-~V~~i~~~~~g~~~~v~~~--~G~--~i~a-d~vI~A~G~ 250 (550)
T 2e4g_A 199 FLRRFATEKLGVRHVED-RVEHVQRDANGNIESVRTA--TGR--VFDA-DLFVDCSGF 250 (550)
T ss_dssp HHHHHHHHHSCCEEEEC-CEEEEEECTTSCEEEEEET--TSC--EEEC-SEEEECCGG
T ss_pred HHHHHHHhcCCcEEEEC-eEeEEEEcCCCCEEEEEEC--CCC--EEEC-CEEEECCCC
Confidence 44333333 48999999 9999988755677888763 464 5778 899999995
No 159
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A {Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1lpf_A*
Probab=38.37 E-value=30 Score=37.36 Aligned_cols=54 Identities=15% Similarity=0.225 Sum_probs=38.5
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVG 169 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIe 169 (749)
+...+++.|+++++++.|.+|..++ +++ .|.+.+.+| ...+.+ ..||+|.|..-
T Consensus 227 l~~~l~~~Gv~v~~~~~v~~i~~~~-~~~-~v~~~~~~g-~~~~~~-D~vi~a~G~~p 280 (476)
T 3lad_A 227 AQKILTKQGLKILLGARVTGTEVKN-KQV-TVKFVDAEG-EKSQAF-DKLIVAVGRRP 280 (476)
T ss_dssp HHHHHHHTTEEEEETCEEEEEEECS-SCE-EEEEESSSE-EEEEEE-SEEEECSCEEE
T ss_pred HHHHHHhCCCEEEECCEEEEEEEcC-CEE-EEEEEeCCC-cEEEEC-CEEEEeeCCcc
Confidence 3344556789999999999998763 333 366665344 456778 89999999653
No 160
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD binding protein, NADH binding protein, aromatic hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas putida} PDB: 4emi_A* 4emj_A*
Probab=38.00 E-value=15 Score=39.17 Aligned_cols=63 Identities=16% Similarity=0.135 Sum_probs=47.0
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIG 180 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGIG 180 (749)
++....++.|+++++++.|.+|.-+ +++.+|++. +|+ .+.+ ..||+|.|..-...+|..+|+-
T Consensus 190 ~l~~~l~~~GV~i~~~~~v~~i~~~--~~~~~v~~~--dg~--~i~a-D~Vv~a~G~~p~~~l~~~~gl~ 252 (410)
T 3ef6_A 190 WLRGLLTELGVQVELGTGVVGFSGE--GQLEQVMAS--DGR--SFVA-DSALICVGAEPADQLARQAGLA 252 (410)
T ss_dssp HHHHHHHHHTCEEECSCCEEEEECS--SSCCEEEET--TSC--EEEC-SEEEECSCEEECCHHHHHTTCC
T ss_pred HHHHHHHHCCCEEEeCCEEEEEecc--CcEEEEEEC--CCC--EEEc-CEEEEeeCCeecHHHHHhCCCc
Confidence 3434445678999999999999765 366777764 565 4667 8999999987777788777763
No 161
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein, oxidoreductase, enantioselectivity, directed evolution variant; HET: FAD; 1.85A {Aspergillus niger} PDB: 2vvl_A* 2vvl_G*
Probab=37.74 E-value=40 Score=36.32 Aligned_cols=43 Identities=9% Similarity=0.089 Sum_probs=30.8
Q ss_pred CCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCC
Q psy3407 118 RENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 118 r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGA 167 (749)
++|++|++++.|++|..++ +. |.+...+|+ .++| +.||+|+|.
T Consensus 268 ~g~~~i~~~~~V~~i~~~~-~~---v~v~~~~g~--~~~a-d~vI~a~~~ 310 (495)
T 2vvm_A 268 TGRLGYVFGCPVRSVVNER-DA---ARVTARDGR--EFVA-KRVVCTIPL 310 (495)
T ss_dssp TTCEEEESSCCEEEEEECS-SS---EEEEETTCC--EEEE-EEEEECCCG
T ss_pred cCceEEEeCCEEEEEEEcC-CE---EEEEECCCC--EEEc-CEEEECCCH
Confidence 3449999999999998873 33 233333564 4677 889999985
No 162
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=37.70 E-value=24 Score=39.06 Aligned_cols=52 Identities=13% Similarity=0.197 Sum_probs=38.1
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
+|...+++.|++++.+ .|+.|..++++.+++|+.. +|+ +++| +.||.|.|+-
T Consensus 170 ~L~~~a~~~gv~~~~~-~v~~i~~~~~g~~~~v~~~--~g~--~i~a-d~vV~A~G~~ 221 (538)
T 2aqj_A 170 FLKRWAVERGVNRVVD-EVVDVRLNNRGYISNLLTK--EGR--TLEA-DLFIDCSGMR 221 (538)
T ss_dssp HHHHHHHHTTCEEEEC-CEEEEEECTTSCEEEEEET--TSC--EECC-SEEEECCGGG
T ss_pred HHHHHHHHCCCEEEEe-eEeEEEEcCCCcEEEEEEC--CCc--EEEe-CEEEECCCCc
Confidence 4444344568999999 8999988755677777763 564 5788 9999999953
No 163
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the pleckstrin homology domain, structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Probab=37.50 E-value=99 Score=27.85 Aligned_cols=75 Identities=17% Similarity=0.292 Sum_probs=41.7
Q ss_pred CCCCCcceeeec---cceEEeecC----CCCCCceeeEE---eccchhhh---cCCCceeEEEecccceEEEEecCChhh
Q psy3407 562 KSAWTPGFVNLQ---NGILTVKEA----PNSPKNISVIQ---CHSFSQVY---DKSRPYTFKVNFNPYSFVLFAAPDESQ 628 (749)
Q Consensus 562 ~~~~~~~~~~~~---~~~~~~~~~----~~~~~~~~~~~---~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 628 (749)
...|..-|.-|. +..|.-... +...+-+..|. |+..+..- ...++|.|.++- |---..|+|.++.+
T Consensus 29 ~k~WkrRwFvL~~~~~~~L~Y~k~~~~~~~~~~~~G~I~L~~~~~V~~~~~~~~~~~~~~F~i~t-~~r~y~l~A~s~~e 107 (126)
T 1v5p_A 29 SGKFLRRYFILDTQANCLLWYMDNPQNLAVGAGAVGSLQLTYISKVSIATPKQKPKTPFCFVINA-LSQRYFLQANDQKD 107 (126)
T ss_dssp SSCEEEEEEEEETTTTEEEEESSCTTTSCTTCCCSEEEETTTCCEEEECCTTTSCSCSSEEEEEC-SSCEEEEECSSHHH
T ss_pred CCCccceEEEEecCCCCEEEEECCCCCCCCCceeeEEEECCCccEEecCCcccCCCCCEEEEEEC-CCEEEEEECCCHHH
Confidence 446666666665 445555333 33444444443 22222222 234568887753 44445677888888
Q ss_pred hhHHHHhee
Q psy3407 629 LFDWLQDIM 637 (749)
Q Consensus 629 ~~~~~~~~~ 637 (749)
.-+|+.-|-
T Consensus 108 ~~~Wi~al~ 116 (126)
T 1v5p_A 108 LKDWVEALN 116 (126)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888887654
No 164
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc genomics, joint center for structural genomics, JCSG; HET: FAD UNL; 2.40A {Staphylococcus aureus}
Probab=37.40 E-value=25 Score=35.94 Aligned_cols=54 Identities=19% Similarity=0.242 Sum_probs=36.1
Q ss_pred hhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCCh
Q psy3407 110 AFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSP 171 (749)
Q Consensus 110 ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTP 171 (749)
.|+....++.+++++.++.|++|..+++ . +.+...+| .+.+ +.||||+|+...|
T Consensus 92 ~~l~~~~~~~gv~i~~~~~v~~i~~~~~-~---~~v~~~~g---~~~~-d~vVlAtG~~~~p 145 (369)
T 3d1c_A 92 EYLQVVANHYELNIFENTVVTNISADDA-Y---YTIATTTE---TYHA-DYIFVATGDYNFP 145 (369)
T ss_dssp HHHHHHHHHTTCEEECSCCEEEEEECSS-S---EEEEESSC---CEEE-EEEEECCCSTTSB
T ss_pred HHHHHHHHHcCCeEEeCCEEEEEEECCC-e---EEEEeCCC---EEEe-CEEEECCCCCCcc
Confidence 3454444556899999999999987632 2 22333244 3667 8899999986544
No 165
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A {Saccharomyces cerevisiae}
Probab=37.39 E-value=19 Score=39.24 Aligned_cols=65 Identities=14% Similarity=0.168 Sum_probs=42.8
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH-HhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL-LMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL-LL~SGI 179 (749)
.+....++.|+++++++.|.+|.-+++++...|++. +|+ ..+.+ ..||+|.|..-...| |..+|+
T Consensus 231 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~~~~~v~~~--~G~-~~i~~-D~vv~a~G~~p~~~l~l~~~gl 296 (479)
T 2hqm_A 231 TITDHYVKEGINVHKLSKIVKVEKNVETDKLKIHMN--DSK-SIDDV-DELIWTIGRKSHLGMGSENVGI 296 (479)
T ss_dssp HHHHHHHHHTCEEECSCCEEEEEECC-CCCEEEEET--TSC-EEEEE-SEEEECSCEEECCCSSGGGGTC
T ss_pred HHHHHHHhCCeEEEeCCEEEEEEEcCCCcEEEEEEC--CCc-EEEEc-CEEEECCCCCCccccChhhcCc
Confidence 343444567899999999999987533434556552 563 35777 899999996533344 445554
No 166
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=37.29 E-value=28 Score=38.43 Aligned_cols=51 Identities=14% Similarity=0.098 Sum_probs=36.8
Q ss_pred hhhhhccC-CCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCC
Q psy3407 111 FLEPAKFR-ENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGA 167 (749)
Q Consensus 111 yL~pa~~r-~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGA 167 (749)
+|...+++ .|++++.+ .|+.|..++++.+++|+.. +|.+ ++| +.||.|.|+
T Consensus 180 ~L~~~a~~~~Gv~i~~~-~v~~i~~~~~g~~~~v~~~--~g~~--i~a-d~vV~AdG~ 231 (526)
T 2pyx_A 180 LLTEHCTQKLGVTHIRD-HVSQIINNQHGDIEKLITK--QNGE--ISG-QLFIDCTGA 231 (526)
T ss_dssp HHHHHHHHTSCCEEEEC-CEEEEEECTTSCEEEEEES--SSCE--EEC-SEEEECSGG
T ss_pred HHHHHHHhcCCCEEEEe-EEEEEEecCCCcEEEEEEC--CCCE--EEc-CEEEECCCc
Confidence 44333344 78999999 5999988755667777663 4543 788 899999985
No 167
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium; HET: FAD; 1.90A {Sinorhizobium meliloti}
Probab=37.20 E-value=46 Score=36.23 Aligned_cols=65 Identities=14% Similarity=0.177 Sum_probs=44.6
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHH--HhhcCC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQL--LMLSGI 179 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrL--LL~SGI 179 (749)
+....++.++++++++.|.++.-++ + ...|.+.+. +|+..++.+ ..||+|.|..-...+ |...|+
T Consensus 245 l~~~l~~~gV~v~~~~~v~~i~~~~-~-~~~v~~~~~~~g~~~~i~~-D~Vi~a~G~~p~~~~l~l~~~g~ 312 (491)
T 3urh_A 245 LQRMLTKQGIDFKLGAKVTGAVKSG-D-GAKVTFEPVKGGEATTLDA-EVVLIATGRKPSTDGLGLAKAGV 312 (491)
T ss_dssp HHHHHHHTTCEEECSEEEEEEEEET-T-EEEEEEEETTSCCCEEEEE-SEEEECCCCEECCTTSCHHHHTC
T ss_pred HHHHHHhCCCEEEECCeEEEEEEeC-C-EEEEEEEecCCCceEEEEc-CEEEEeeCCccCCCccCchhcCc
Confidence 4344556789999999999998763 2 344666653 365567888 899999996544443 455554
No 168
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase, rubredoxin reductas NAD, flavoprotein, oxidoreductase; HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Probab=36.83 E-value=42 Score=35.11 Aligned_cols=62 Identities=10% Similarity=0.086 Sum_probs=43.4
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
.+....++.++++++++.|.+|..++ + ...|++ .+|+ ++.+ +.||+|+|.--...||..+|+
T Consensus 192 ~l~~~l~~~gv~i~~~~~v~~i~~~~-~-~~~v~~--~~g~--~i~~-d~vv~a~G~~p~~~l~~~~g~ 253 (384)
T 2v3a_A 192 AVQAGLEGLGVRFHLGPVLASLKKAG-E-GLEAHL--SDGE--VIPC-DLVVSAVGLRPRTELAFAAGL 253 (384)
T ss_dssp HHHHHHHTTTCEEEESCCEEEEEEET-T-EEEEEE--TTSC--EEEE-SEEEECSCEEECCHHHHHTTC
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEecC-C-EEEEEE--CCCC--EEEC-CEEEECcCCCcCHHHHHHCCC
Confidence 44444567789999999999998753 2 234444 3564 4677 889999997655557766665
No 169
>2a87_A TRXR, TR, thioredoxin reductase; FAD, NAP, NMA, TLS, oxidoreduct structural genomics, PSI, protein structure initiative; HET: FAD NAP; 3.00A {Mycobacterium tuberculosis}
Probab=36.27 E-value=23 Score=36.08 Aligned_cols=56 Identities=16% Similarity=0.234 Sum_probs=41.7
Q ss_pred ccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 116 KFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 116 ~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
.++.|+++++++.|.+|.-+ +++.+|++.+. +|+..++.+ ..||+|.|..-.+.+|
T Consensus 201 ~~~~gV~v~~~~~v~~i~~~--~~~~~v~~~~~~~g~~~~i~~-D~vi~a~G~~p~~~~~ 257 (335)
T 2a87_A 201 RNNDKIRFLTNHTVVAVDGD--TTVTGLRVRDTNTGAETTLPV-TGVFVAIGHEPRSGLV 257 (335)
T ss_dssp HHCTTEEEECSEEEEEEECS--SSCCEEEEEEETTSCCEEECC-SCEEECSCEEECCTTT
T ss_pred hccCCcEEEeCceeEEEecC--CcEeEEEEEEcCCCceEEeec-CEEEEccCCccChhHh
Confidence 35679999999999999765 35677887653 565567888 8899999976444444
No 170
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein, oxidoreductase; HET: FAD; 2.89A {Streptomyces argillaceus}
Probab=36.24 E-value=22 Score=40.12 Aligned_cols=54 Identities=19% Similarity=0.151 Sum_probs=38.0
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
.|...+++.|++|+.++.|+.|..++ +.++ |++.+.+|. .+++| +.||.|.|+-
T Consensus 153 ~L~~~a~~~gv~i~~~~~v~~l~~~~-~~v~-v~~~~~~G~-~~~~a-~~vV~ADG~~ 206 (570)
T 3fmw_A 153 LLAEHAREAGAEIPRGHEVTRLRQDA-EAVE-VTVAGPSGP-YPVRA-RYGVGCDGGR 206 (570)
T ss_dssp HHHHHHHHHTEECCBSCEEEECCBCS-SCEE-EEEEETTEE-EEEEE-SEEEECSCSS
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEcC-CeEE-EEEEeCCCc-EEEEe-CEEEEcCCCC
Confidence 34333344589999999999998873 3343 666544563 57888 8999999974
No 171
>2q13_A DCC-interacting protein 13 alpha; APPL1, BAR domain, PH domain, BAR-PH domain, protein transpo; 2.05A {Homo sapiens} PDB: 2z0o_A 2elb_A
Probab=35.41 E-value=42 Score=35.75 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=53.1
Q ss_pred cccccCceeEEecC--C-CCCCcceeeeccceEEeecCCCCCCceeeE---EeccchhhhcCCCceeEEEecccc-eEEE
Q psy3407 548 QVFRSGNLMYKIND--K-SAWTPGFVNLQNGILTVKEAPNSPKNISVI---QCHSFSQVYDKSRPYTFKVNFNPY-SFVL 620 (749)
Q Consensus 548 ~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 620 (749)
.+.+.|-|.-+-.. + ..|..-|.-|++|.|.....+. .....+| .|- ...+-+..|+|.|+|...-- .-.+
T Consensus 277 ~~~k~G~L~K~~~~~~~~~~WkkRwfvL~~~~L~y~k~~~-~~~~~~i~l~~~~-v~~~~~~~r~~~F~i~t~~~~~~~~ 354 (385)
T 2q13_A 277 LTRKAGYLNARNKTGLVSSTWDRQFYFTQGGNLMSQARGD-VAGGLAMDIDNCS-VMAVDCEDRRYCFQITSFDGKKSSI 354 (385)
T ss_dssp CSCCEEEEEEC--------CCEEEEEEEETTEEEEECSSC-SSCEEEEECTTCE-EEEECCTTCSSEEEEECTTSCBCCC
T ss_pred CccEEEEEEEecCCCCCcCCceeEEEEEECCEEEEecCCC-cCCCceEEccceE-EEeccccCCCceEEEEeCCCCeEEE
Confidence 45677776544222 2 3699999999999997655532 2222222 231 11223467899999975430 2346
Q ss_pred EecCChhhhhHHHHhee
Q psy3407 621 FAAPDESQLFDWLQDIM 637 (749)
Q Consensus 621 ~~~~~~~~~~~~~~~~~ 637 (749)
|.|.+|.+.-+|++.|-
T Consensus 355 l~A~s~~e~~~Wi~ai~ 371 (385)
T 2q13_A 355 LQAESKKDHEEWICTIN 371 (385)
T ss_dssp EECSSHHHHHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHH
Confidence 77888888888887653
No 172
>2eq6_A Pyruvate dehydrogenase complex, dihydrolipoamide dehydrogenase E3 component; oxidoreductase, homodimer, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2eq8_A* 2eq9_A*
Probab=33.99 E-value=42 Score=36.33 Aligned_cols=65 Identities=17% Similarity=0.139 Sum_probs=43.3
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecC--CeEEEEEeccEEEEccCCCCChHH--HhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQ--GKICHVNSTREVILSAGAVGSPQL--LMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~--G~~~~V~ArKeVILAAGAIeTPrL--LL~SGI 179 (749)
++....++.|+++++++.|.+|.-++ +. ..|++.+ + |+..++.+ ..||+|.|..-...+ |...|+
T Consensus 215 ~l~~~l~~~gV~i~~~~~v~~i~~~~-~~-~~v~~~~-~~~g~~~~i~~-D~vv~a~G~~p~~~~l~l~~~g~ 283 (464)
T 2eq6_A 215 LLRRALEKEGIRVRTKTKAVGYEKKK-DG-LHVRLEP-AEGGEGEEVVV-DKVLVAVGRKPRTEGLGLEKAGV 283 (464)
T ss_dssp HHHHHHHHTTCEEECSEEEEEEEEET-TE-EEEEEEE-TTCCSCEEEEE-SEEEECSCEEESCTTSSHHHHTC
T ss_pred HHHHHHHhcCCEEEcCCEEEEEEEeC-CE-EEEEEee-cCCCceeEEEc-CEEEECCCcccCCCCCChhhcCc
Confidence 34344456789999999999998662 33 3466653 4 76567788 899999996544443 334454
No 173
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase; HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB: 2r0g_A* 2r0p_A* 3ept_A*
Probab=33.93 E-value=70 Score=35.59 Aligned_cols=45 Identities=11% Similarity=0.104 Sum_probs=34.4
Q ss_pred EEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCC
Q psy3407 123 ILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGS 170 (749)
Q Consensus 123 IlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeT 170 (749)
|+.++.|+.|..++ +.++ |++.+. +|+..+++| +.||.|.|+--+
T Consensus 152 v~~~~~v~~~~~~~-~~v~-v~~~~~~~G~~~~i~a-~~vVgADG~~S~ 197 (549)
T 2r0c_A 152 LRTRSRLDSFEQRD-DHVR-ATITDLRTGATRAVHA-RYLVACDGASSP 197 (549)
T ss_dssp EECSEEEEEEEECS-SCEE-EEEEETTTCCEEEEEE-EEEEECCCTTCH
T ss_pred cccCcEEEEEEEeC-CEEE-EEEEECCCCCEEEEEe-CEEEECCCCCcH
Confidence 99999999999874 4454 666652 476678999 999999997543
No 174
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO, variegate porphyria disease, VP oxidoreductase-oxidoreductase inhibitor complex; HET: ACJ FAD; 1.90A {Homo sapiens}
Probab=33.86 E-value=13 Score=39.71 Aligned_cols=50 Identities=14% Similarity=0.191 Sum_probs=34.7
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
.+.|.+|++++.|++|..++ +++..|+. +|. +++| +.||+|+++-...+|
T Consensus 245 ~~~g~~i~~~~~V~~i~~~~-~~~~~v~~---~~~--~~~a-d~vv~a~p~~~~~~l 294 (477)
T 3nks_A 245 TSRGVSVLRGQPVCGLSLQA-EGRWKVSL---RDS--SLEA-DHVISAIPASVLSEL 294 (477)
T ss_dssp HHTTCEEECSCCCCEEEECG-GGCEEEEC---SSC--EEEE-SEEEECSCHHHHHHH
T ss_pred HhcCCEEEeCCEEEEEEEcC-CceEEEEE---CCe--EEEc-CEEEECCCHHHHHHh
Confidence 34578999999999998873 34345533 343 4778 889999876444444
No 175
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A* 4aos_A* 4ap1_A*
Probab=33.46 E-value=15 Score=41.28 Aligned_cols=66 Identities=24% Similarity=0.350 Sum_probs=45.0
Q ss_pred hhhhhhhccCCCe--EEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 109 KAFLEPAKFRENL--IILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 109 ~ayL~pa~~r~NL--tIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
..|+....++-++ +++.++.|+++.++++.....|+. .+|+ ++++ +.||+|.|+...|++.-..|+
T Consensus 102 ~~yl~~~~~~~g~~~~i~~~~~V~~i~~~~~~~~w~V~~--~~G~--~i~a-d~lV~AtG~~s~p~~p~ipG~ 169 (549)
T 4ap3_A 102 LAYLEHVADRFDLRRDIRFDTRVTSAVLDEEGLRWTVRT--DRGD--EVSA-RFLVVAAGPLSNANTPAFDGL 169 (549)
T ss_dssp HHHHHHHHHHTTCGGGEECSCCEEEEEEETTTTEEEEEE--TTCC--EEEE-EEEEECCCSEEECCCCCCTTG
T ss_pred HHHHHHHHHHcCCCccEEECCEEEEEEEcCCCCEEEEEE--CCCC--EEEe-CEEEECcCCCCCCCCCCCCCc
Confidence 3455554455566 789999999999884443444444 3565 4677 889999998877776655553
No 176
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates, flavoenzymes, nicotine degradation, oxidoreductase; HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB: 3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X* 3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Probab=32.58 E-value=46 Score=34.94 Aligned_cols=47 Identities=17% Similarity=0.087 Sum_probs=32.2
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAG 166 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAG 166 (749)
+...+++.+ +|++++.|++|..++ +.++ |++ .+|+ +++| +.||+|+|
T Consensus 210 ~~~~~~~~g-~i~~~~~V~~i~~~~-~~v~-v~~--~~g~--~~~a-d~vi~a~~ 256 (431)
T 3k7m_X 210 VDAMSQEIP-EIRLQTVVTGIDQSG-DVVN-VTV--KDGH--AFQA-HSVIVATP 256 (431)
T ss_dssp HHHHHTTCS-CEESSCCEEEEECSS-SSEE-EEE--TTSC--CEEE-EEEEECSC
T ss_pred HHHHHhhCC-ceEeCCEEEEEEEcC-CeEE-EEE--CCCC--EEEe-CEEEEecC
Confidence 333344556 999999999998773 3433 443 3564 4778 88999987
No 177
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride transfer mechanism, GR2-family, flavoenzyme, FAD containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB: 2jb1_A* 2jb2_A* 2jb3_A*
Probab=32.57 E-value=74 Score=34.18 Aligned_cols=42 Identities=19% Similarity=0.083 Sum_probs=30.8
Q ss_pred eEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccC
Q psy3407 121 LIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAG 166 (749)
Q Consensus 121 LtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAG 166 (749)
.+|++++.|++|..+ +++++ |++.+ .|...+++| +.||+++.
T Consensus 252 ~~i~~~~~V~~i~~~-~~~v~-v~~~~-g~~~~~~~a-d~vI~a~p 293 (489)
T 2jae_A 252 DNIVFGAEVTSMKNV-SEGVT-VEYTA-GGSKKSITA-DYAICTIP 293 (489)
T ss_dssp GGEETTCEEEEEEEE-TTEEE-EEEEE-TTEEEEEEE-SEEEECSC
T ss_pred CeEEECCEEEEEEEc-CCeEE-EEEec-CCeEEEEEC-CEEEECCC
Confidence 569999999999887 34444 55544 344457888 89999985
No 178
>3hyw_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3hyv_A* 3hyx_A*
Probab=32.40 E-value=49 Score=35.46 Aligned_cols=61 Identities=21% Similarity=0.256 Sum_probs=44.8
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
++....++.|+++++++.|++|.-+ ++.+.+.+|...++.+ ..||+++|.-. |.++..||.
T Consensus 205 ~l~~~l~~~GV~~~~~~~v~~v~~~------~~~~~~~~g~~~~i~~-d~vi~~~G~~~-~~~~~~~~~ 265 (430)
T 3hyw_A 205 LVEDLFAERNIDWIANVAVKAIEPD------KVIYEDLNGNTHEVPA-KFTMFMPSFQG-PEVVASAGD 265 (430)
T ss_dssp HHHHHHHHTTCEEECSCEEEEECSS------EEEEECTTSCEEEEEC-SEEEEECEEEC-CHHHHTTCT
T ss_pred HHHHHHHhCCeEEEeCceEEEEeCC------ceEEEeeCCCceEeec-ceEEEeccCCC-chHHHhccc
Confidence 4555556678999999999998432 3455565787788988 89999998554 467777764
No 179
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein, FAD, mitochondrion, redox-active center, selenium, selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus musculus} PDB: 1zkq_A* 1zdl_A*
Probab=32.28 E-value=69 Score=34.86 Aligned_cols=61 Identities=15% Similarity=0.058 Sum_probs=42.7
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
.+...+++.++++++++.|.+|.-.+++. ..|++.+. +|+..++.+ ..||+|.|-.-...+
T Consensus 230 ~l~~~l~~~gv~~~~~~~v~~i~~~~~~~-~~v~~~~~~~g~~~~~~~-D~vi~a~G~~p~~~~ 291 (488)
T 3dgz_A 230 LVTEHMESHGTQFLKGCVPSHIKKLPTNQ-LQVTWEDHASGKEDTGTF-DTVLWAIGRVPETRT 291 (488)
T ss_dssp HHHHHHHHTTCEEEETEEEEEEEECTTSC-EEEEEEETTTTEEEEEEE-SEEEECSCEEESCGG
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEcCCCc-EEEEEEeCCCCeeEEEEC-CEEEEcccCCcccCc
Confidence 33344556789999999999998753333 34666653 366667888 899999996544444
No 180
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin contain oxidoreductase, monoamine oxidase, NAD, extracellular, oxidoreductase; HET: FAD; 2.50A {Homo sapiens}
Probab=32.19 E-value=15 Score=37.56 Aligned_cols=48 Identities=17% Similarity=0.034 Sum_probs=32.8
Q ss_pred CeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 120 NLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 120 NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
+.+|++++.|++|..++ +.++ |+. .+|+. +++ +.||+|+.+-.+.+||
T Consensus 123 g~~i~~~~~V~~i~~~~-~~~~-v~~--~~g~~--~~a-d~vV~A~p~~~~~~ll 170 (342)
T 3qj4_A 123 GAEVYFRHRVTQINLRD-DKWE-VSK--QTGSP--EQF-DLIVLTMPVPEILQLQ 170 (342)
T ss_dssp TCEEESSCCEEEEEECS-SSEE-EEE--SSSCC--EEE-SEEEECSCHHHHTTCB
T ss_pred CCEEEeCCEEEEEEEcC-CEEE-EEE--CCCCE--EEc-CEEEECCCHHHHHHHh
Confidence 78999999999999873 3332 333 35653 467 8899997654444444
No 181
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide, acetylation, alternative initiation, cytoplasm, FAD, flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A {Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A* 1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A* 3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A* 1xan_A* 5grt_A* ...
Probab=31.58 E-value=58 Score=35.24 Aligned_cols=68 Identities=13% Similarity=0.030 Sum_probs=43.6
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeE--EEEEeccEEEEccCCCCChH-H-HhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKI--CHVNSTREVILSAGAVGSPQ-L-LMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~--~~V~ArKeVILAAGAIeTPr-L-LL~SGI 179 (749)
++...+++.++++++++.|.++.-++++....|.+.+. .|+. ..+.+ ..||+|.|..-... | |...|+
T Consensus 233 ~~~~~l~~~gv~i~~~~~v~~i~~~~~~~~~~v~~~~~~~g~~~g~~~~~-D~vi~a~G~~p~~~~l~l~~~g~ 305 (478)
T 3dk9_A 233 NCTEELENAGVEVLKFSQVKEVKKTLSGLEVSMVTAVPGRLPVMTMIPDV-DCLLWAIGRVPNTKDLSLNKLGI 305 (478)
T ss_dssp HHHHHHHHTTCEEETTEEEEEEEECSSSEEEEEEECCTTSCCEEEEEEEE-SEEEECSCEEESCTTSCGGGGTC
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEEccCCCCcccceEEEc-CEEEEeeccccCCCCCCchhcCC
Confidence 34344556789999999999998764443345666442 2433 56778 89999999643333 3 444444
No 182
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD; 1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A* 3up4_A* 3up5_A*
Probab=30.96 E-value=21 Score=40.16 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=41.9
Q ss_pred hhhhhhccCCCe--EEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 110 AFLEPAKFRENL--IILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 110 ayL~pa~~r~NL--tIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
.|+....++-++ +++.++.|+++.++++.....|+. .+|+ ++++ +.||+|.|....|++.-.-|+
T Consensus 91 ~yl~~~~~~~~l~~~i~~~~~V~~~~~~~~~~~w~V~~--~~G~--~~~a-d~lV~AtG~~s~p~~p~ipG~ 157 (545)
T 3uox_A 91 RYVNRAADAMDVRKHYRFNTRVTAARYVENDRLWEVTL--DNEE--VVTC-RFLISATGPLSASRMPDIKGI 157 (545)
T ss_dssp HHHHHHHHHHTCGGGEECSCCEEEEEEEGGGTEEEEEE--TTTE--EEEE-EEEEECCCSCBC---CCCTTG
T ss_pred HHHHHHHHHcCCcCcEEECCEEEEEEEeCCCCEEEEEE--CCCC--EEEe-CEEEECcCCCCCCcCCCCCCc
Confidence 455444444455 788899999999874333334443 3665 4677 889999999888888765554
No 183
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase; HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Probab=30.95 E-value=40 Score=36.99 Aligned_cols=62 Identities=16% Similarity=0.254 Sum_probs=44.1
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
++....++.|+++++++.|.+|.-+ ++++ +|+. .+|+ ++.+ ..||+|+|..-...||..+|+
T Consensus 231 ~~~~~l~~~GV~v~~~~~V~~i~~~-~~~~-~v~l--~dG~--~i~a-D~Vv~a~G~~pn~~l~~~~gl 292 (493)
T 1m6i_A 231 WTMEKVRREGVKVMPNAIVQSVGVS-SGKL-LIKL--KDGR--KVET-DHIVAAVGLEPNVELAKTGGL 292 (493)
T ss_dssp HHHHHHHTTTCEEECSCCEEEEEEE-TTEE-EEEE--TTSC--EEEE-SEEEECCCEEECCTTHHHHTC
T ss_pred HHHHHHHhcCCEEEeCCEEEEEEec-CCeE-EEEE--CCCC--EEEC-CEEEECCCCCccHHHHHHcCC
Confidence 3434456778999999999999765 3333 4554 2564 4677 899999998766567777775
No 184
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme complex protein, pyruvate dehydrogenase complex, glycine decarboxylase complex; HET: FAD; 3.15A {Pisum sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=30.88 E-value=36 Score=36.66 Aligned_cols=60 Identities=13% Similarity=0.080 Sum_probs=40.8
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
++....++.++++++++.|.+|.-++ +. ..|++.+. +|+..++.+ ..||+|.|..-...+
T Consensus 223 ~l~~~l~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~~~~~g~~~~~~~-D~vv~a~G~~p~~~~ 283 (470)
T 1dxl_A 223 QFQRSLEKQGMKFKLKTKVVGVDTSG-DG-VKLTVEPSAGGEQTIIEA-DVVLVSAGRTPFTSG 283 (470)
T ss_dssp HHHHHHHHSSCCEECSEEEEEEECSS-SS-EEEEEEESSSCCCEEEEE-SEEECCCCEEECCTT
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEEcC-Ce-EEEEEEecCCCcceEEEC-CEEEECCCCCcCCCC
Confidence 34444556789999999999998653 33 34555432 454456778 899999997654444
No 185
>2a8x_A Dihydrolipoyl dehydrogenase, E3 component of alpha; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha keto acid dehydrogenase; HET: FAD; 2.40A {Mycobacterium tuberculosis} PDB: 3ii4_A*
Probab=30.88 E-value=47 Score=35.80 Aligned_cols=65 Identities=18% Similarity=0.156 Sum_probs=42.9
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH--HhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL--LMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL--LL~SGI 179 (749)
++....++.++++++++.|.+|.-++ ++ ..|++.+ +|...++.+ ..||+|.|..-...+ |..+|+
T Consensus 217 ~l~~~l~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~~-~g~~~~~~~-D~vv~a~G~~p~~~~l~~~~~gl 283 (464)
T 2a8x_A 217 EIEKQFKKLGVTILTATKVESIADGG-SQ-VTVTVTK-DGVAQELKA-EKVLQAIGFAPNVEGYGLDKAGV 283 (464)
T ss_dssp HHHHHHHHHTCEEECSCEEEEEEECS-SC-EEEEEES-SSCEEEEEE-SEEEECSCEEECCSSSCHHHHTC
T ss_pred HHHHHHHHcCCEEEeCcEEEEEEEcC-Ce-EEEEEEc-CCceEEEEc-CEEEECCCCCccCCCCCchhcCC
Confidence 34344456689999999999998763 33 3355542 565567888 899999997644444 334443
No 186
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A, flavin adenine dinucleotide, selenomethionine, F flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Probab=30.39 E-value=48 Score=36.08 Aligned_cols=60 Identities=18% Similarity=0.165 Sum_probs=42.2
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
+....++.|+++++++.|.+|.-+ +++.+|.. ++. ++.+ +.||+|+|..-.+.+|..+|+
T Consensus 233 l~~~l~~~Gv~i~~~~~v~~i~~~--~~v~~v~~---~~~--~i~~-D~vi~a~G~~p~~~~l~~~g~ 292 (480)
T 3cgb_A 233 IYKEADKHHIEILTNENVKAFKGN--ERVEAVET---DKG--TYKA-DLVLVSVGVKPNTDFLEGTNI 292 (480)
T ss_dssp HHHHHHHTTCEEECSCCEEEEEES--SBEEEEEE---TTE--EEEC-SEEEECSCEEESCGGGTTSCC
T ss_pred HHHHHHHcCcEEEcCCEEEEEEcC--CcEEEEEE---CCC--EEEc-CEEEECcCCCcChHHHHhCCc
Confidence 334445678999999999999765 45666654 333 5777 899999998755556655554
No 187
>4dna_A Probable glutathione reductase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; HET: FAD; 2.80A {Sinorhizobium meliloti}
Probab=30.37 E-value=44 Score=36.09 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=41.6
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH--HhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL--LMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL--LL~SGI 179 (749)
.+...+++.+++|++++.|.+|..++++ ...|++ ..+|+ +.+ ..||+|+|..-...+ |...|+
T Consensus 216 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~~-~~~v~~-~~~g~---i~a-D~Vv~a~G~~p~~~~l~l~~~g~ 280 (463)
T 4dna_A 216 GLHAAMEEKGIRILCEDIIQSVSADADG-RRVATT-MKHGE---IVA-DQVMLALGRMPNTNGLGLEAAGV 280 (463)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEECTTS-CEEEEE-SSSCE---EEE-SEEEECSCEEESCTTSSTGGGTC
T ss_pred HHHHHHHHCCCEEECCCEEEEEEEcCCC-EEEEEE-cCCCe---EEe-CEEEEeeCcccCCCCCCccccCc
Confidence 3434456678999999999999886333 345552 22564 777 899999997544443 334443
No 188
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center, glycolysis, oxidoreductase; HET: FAD; 2.60A {Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=30.13 E-value=54 Score=35.22 Aligned_cols=59 Identities=10% Similarity=0.110 Sum_probs=40.2
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
++....++.|+++++++.|.+|.-++ +. ..|++.+ +|...++.+ ..||+|.|..-...+
T Consensus 216 ~l~~~l~~~gv~i~~~~~v~~i~~~~-~~-~~v~~~~-~g~~~~~~~-D~vv~a~G~~p~~~~ 274 (455)
T 1ebd_A 216 IIKKRLKKKGVEVVTNALAKGAEERE-DG-VTVTYEA-NGETKTIDA-DYVLVTVGRRPNTDE 274 (455)
T ss_dssp HHHHHHHHTTCEEEESEEEEEEEEET-TE-EEEEEEE-TTEEEEEEE-SEEEECSCEEESCSS
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEeC-Ce-EEEEEEe-CCceeEEEc-CEEEECcCCCcccCc
Confidence 34344456789999999999998653 22 3455543 455567888 899999997644444
No 189
>1zmd_A Dihydrolipoyl dehydrogenase; lipoamide dehydrogenase, pyruvate dehydrogenase, alpha- ketoglutarate dehydrogenase; HET: FAD NAI; 2.08A {Homo sapiens} PDB: 1zmc_A* 2f5z_A* 1zy8_A* 3rnm_A*
Probab=29.98 E-value=57 Score=35.25 Aligned_cols=67 Identities=16% Similarity=0.096 Sum_probs=42.7
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEec-CCeEEEEEeccEEEEccCCCCChHH--HhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINS-QGKICHVNSTREVILSAGAVGSPQL--LMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~-~G~~~~V~ArKeVILAAGAIeTPrL--LL~SGI 179 (749)
++....++.++++++++.|.+|.-+++ ....|++.+. .+...++.+ ..||+|.|..-...+ |..+|+
T Consensus 225 ~l~~~l~~~Gv~i~~~~~v~~i~~~~~-~~~~v~~~~~~~~~~~~i~~-D~vv~a~G~~p~~~~l~l~~~g~ 294 (474)
T 1zmd_A 225 NFQRILQKQGFKFKLNTKVTGATKKSD-GKIDVSIEAASGGKAEVITC-DVLLVCIGRRPFTKNLGLEELGI 294 (474)
T ss_dssp HHHHHHHHTTCEEECSEEEEEEEECTT-SCEEEEEEETTSCCCEEEEE-SEEEECSCEEECCTTSSHHHHTC
T ss_pred HHHHHHHHCCCEEEeCceEEEEEEcCC-ceEEEEEEecCCCCceEEEc-CEEEECcCCCcCCCcCCchhcCC
Confidence 344445567899999999999987633 3234555421 233345777 899999997644444 344454
No 190
>2rov_A RHO-associated protein kinase 2; ATP-binding, coiled coil, cytoplasm, membrane, metal-binding, nucleotide-binding, phorbol-ester binding; NMR {Rattus norvegicus}
Probab=29.21 E-value=51 Score=29.59 Aligned_cols=34 Identities=18% Similarity=0.395 Sum_probs=26.6
Q ss_pred CCCceeEEEecc-----cceEEEEecCChhhhhHHHHhe
Q psy3407 603 KSRPYTFKVNFN-----PYSFVLFAAPDESQLFDWLQDI 636 (749)
Q Consensus 603 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 636 (749)
+.-|+.|+|... |-...+|.|++|.+.-.|++.+
T Consensus 72 ~~~p~iF~I~~~~~~~~~~~~l~l~A~s~~e~~~WV~aL 110 (117)
T 2rov_A 72 KEIPRIFQILYANEGISSAKNLLLLANSTEEQQKWVSRL 110 (117)
T ss_dssp TTGGGEEEEEECSSSSTTCEEEEEECSSHHHHHHHHHHH
T ss_pred ccCCcEEEEEeCCCCCCCCcEEEEEeCCHHHHHHHHHHH
Confidence 335899999873 3456788899999999998765
No 191
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural genomics, PSI-2, protein structure initiative; HET: FAD; 2.60A {Enterococcus faecalis}
Probab=29.00 E-value=68 Score=34.47 Aligned_cols=56 Identities=11% Similarity=0.032 Sum_probs=40.0
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
.+....++.|++|++++.|.+|..+ ++++ +|+. + +| ++.+ ..||+|.|..-...+|
T Consensus 194 ~l~~~l~~~GV~i~~~~~v~~i~~~-~~~v-~v~~-~-~g---~i~a-D~Vv~A~G~~p~~~~l 249 (452)
T 3oc4_A 194 EVQKSLEKQAVIFHFEETVLGIEET-ANGI-VLET-S-EQ---EISC-DSGIFALNLHPQLAYL 249 (452)
T ss_dssp HHHHHHHTTTEEEEETCCEEEEEEC-SSCE-EEEE-S-SC---EEEE-SEEEECSCCBCCCSSC
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEcc-CCeE-EEEE-C-CC---EEEe-CEEEECcCCCCChHHH
Confidence 4444556789999999999999865 3455 5555 2 44 5778 8899999976544444
No 192
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH, flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus subtilis} PDB: 3lzx_A*
Probab=28.94 E-value=40 Score=33.57 Aligned_cols=64 Identities=17% Similarity=0.143 Sum_probs=41.3
Q ss_pred hhhhhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCC-ChHHHhhcC
Q psy3407 108 SKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVG-SPQLLMLSG 178 (749)
Q Consensus 108 a~ayL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIe-TPrLLL~SG 178 (749)
...++....++.+.+++.++.|++|..++++ ...|+. .+|+ +.+ +.||+|.|+-. .|+.+-..|
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~~-~~~v~~--~~g~---~~~-d~vVlAtG~~~~~p~~~~~~g 133 (332)
T 3lzw_A 69 LINNLKEQMAKFDQTICLEQAVESVEKQADG-VFKLVT--NEET---HYS-KTVIITAGNGAFKPRKLELEN 133 (332)
T ss_dssp HHHHHHHHHTTSCCEEECSCCEEEEEECTTS-CEEEEE--SSEE---EEE-EEEEECCTTSCCEECCCCCTT
T ss_pred HHHHHHHHHHHhCCcEEccCEEEEEEECCCC-cEEEEE--CCCE---EEe-CEEEECCCCCcCCCCCCCCCC
Confidence 3445555556678999999999999887332 222333 2443 667 88999999843 555544433
No 193
>2rlo_A Centaurin-gamma 1; split PH domain, alternative splicing, ANK repeat, cytoplasm, GTP-binding, GTPase activation, metal-binding, nucleotide-binding; NMR {Homo sapiens}
Probab=28.21 E-value=32 Score=30.49 Aligned_cols=34 Identities=18% Similarity=0.196 Sum_probs=23.7
Q ss_pred CCceeEEEecccceEEEEecCChhhhhHHHHhee
Q psy3407 604 SRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIM 637 (749)
Q Consensus 604 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 637 (749)
.+++.|.|...----..|.|+++.+.-+|++.|.
T Consensus 87 ~~~~~F~I~t~~~r~~~l~A~s~~e~~~Wi~ai~ 120 (128)
T 2rlo_A 87 EENFEFLIVSSTGQTWHFEAASFEERDAWVQAIE 120 (128)
T ss_dssp CCCCCEEEECTTSCEEEEEESSHHHHHHHHHHHH
T ss_pred cCCceEEEEcCCCCEEEEEcCCHHHHHHHHHHHH
Confidence 5778888865442334567788888888887653
No 194
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4, X-RAY, structure, PSI, protein structure initiative; HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Probab=27.95 E-value=42 Score=33.68 Aligned_cols=49 Identities=14% Similarity=0.249 Sum_probs=34.7
Q ss_pred CeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 120 NLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 120 NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
+++|+.++.|++|..++ +. |.+...+|+ ...++ +.||+|.|+-...++|
T Consensus 119 g~~i~~~~~v~~i~~~~-~~---~~v~~~~g~-~~~~a-~~vV~a~g~~~~~~~~ 167 (336)
T 1yvv_A 119 DMPVSFSCRITEVFRGE-EH---WNLLDAEGQ-NHGPF-SHVIIATPAPQASTLL 167 (336)
T ss_dssp TCCEECSCCEEEEEECS-SC---EEEEETTSC-EEEEE-SEEEECSCHHHHGGGG
T ss_pred cCcEEecCEEEEEEEeC-CE---EEEEeCCCc-Ccccc-CEEEEcCCHHHHHHhh
Confidence 78999999999998873 32 333344665 33346 8999999976655555
No 195
>2dtc_A RAL guanine nucleotide exchange factor ralgps1A; PH domain, protein binding, structural genomics, NPPSFA; 1.70A {Mus musculus}
Probab=27.50 E-value=75 Score=29.32 Aligned_cols=74 Identities=22% Similarity=0.307 Sum_probs=40.1
Q ss_pred CCCCcceeeeccceEEeecCCC-----------CCC-ceeeEEeccchhhhcC-CCceeEEEecc-cceEEEEecCChhh
Q psy3407 563 SAWTPGFVNLQNGILTVKEAPN-----------SPK-NISVIQCHSFSQVYDK-SRPYTFKVNFN-PYSFVLFAAPDESQ 628 (749)
Q Consensus 563 ~~~~~~~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~ 628 (749)
..|..-++-|.+-.|-.=|... .|. -|.+-.|.- ++-|. ++|+.|.+... .=.-.+|.|+++..
T Consensus 22 ksWkr~W~vL~g~~L~yf~~~~~~~~~~~~~~~~P~~~i~L~g~~V--~~~e~~~~~~~F~L~~~~~G~~Y~fqA~s~~~ 99 (126)
T 2dtc_A 22 SSWTRYWVVLSGATLLYYGAKSLRGTDRKHYKSTPGKKVSIVGWMV--QLPDDPEHPDIFQLNNPDKGNVYKFQTGSRFH 99 (126)
T ss_dssp CCCEEEEEEEETTEEEEEEBSSSCCSSGGGBCSSCSEEEECTTCEE--ECCCCTTSTTEEEEECTTSCSEEEEECSSHHH
T ss_pred cCcccEEEEEeCCEEEEEcccccccccccccccCCCceEEeCCCEE--EecCCCCCCCEEEEeeCCCCCEEEEeCCCHHH
Confidence 4577777777766666555431 222 222212222 23333 48888888732 13445667777777
Q ss_pred hhHHHHheee
Q psy3407 629 LFDWLQDIMI 638 (749)
Q Consensus 629 ~~~~~~~~~~ 638 (749)
+-+|++-|--
T Consensus 100 ~~~W~~ai~~ 109 (126)
T 2dtc_A 100 AILWHKHLDD 109 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 7777665543
No 196
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport, FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum tepidum}
Probab=27.44 E-value=74 Score=32.51 Aligned_cols=62 Identities=26% Similarity=0.177 Sum_probs=40.3
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCC-ChHHHhhcC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVG-SPQLLMLSG 178 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIe-TPrLLL~SG 178 (749)
+|....++.+++++.++.|++|..++++. +.+...+|+ .+++ +.||+|.|+-. .|+.+-..|
T Consensus 79 ~l~~~~~~~~~~~~~~~~v~~i~~~~~~~---~~v~~~~g~--~~~~-~~li~AtG~~~~~~~~~~i~g 141 (360)
T 3ab1_A 79 SLWAQAERYNPDVVLNETVTKYTKLDDGT---FETRTNTGN--VYRS-RAVLIAAGLGAFEPRKLPQLG 141 (360)
T ss_dssp HHHHHHHTTCCEEECSCCEEEEEECTTSC---EEEEETTSC--EEEE-EEEEECCTTCSCCBCCCGGGC
T ss_pred HHHHHHHHhCCEEEcCCEEEEEEECCCce---EEEEECCCc--EEEe-eEEEEccCCCcCCCCCCCCCC
Confidence 44344456679999999999998863322 223333564 4667 88999999854 566554444
No 197
>4h8s_A DCC-interacting protein 13-beta; BAR domain, pleckstrin homology domain, adaptor protein, RAB signaling protein; 3.50A {Homo sapiens}
Probab=27.38 E-value=52 Score=35.29 Aligned_cols=90 Identities=17% Similarity=0.280 Sum_probs=53.8
Q ss_pred cccccccCceeEEec-C--CCCCCcceeeeccceEEeecCCC-CC-CceeeEEeccchhhhcCCCceeEEEeccc-ceEE
Q psy3407 546 HDQVFRSGNLMYKIN-D--KSAWTPGFVNLQNGILTVKEAPN-SP-KNISVIQCHSFSQVYDKSRPYTFKVNFNP-YSFV 619 (749)
Q Consensus 546 ~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 619 (749)
...+-+.|-|+-+-. . ...|..-|.-|++|.|..-..+. .| .-|.+--|. ...+-+..|+|.|+|-..- -.-.
T Consensus 298 ~~~~~k~G~L~k~~~~g~~~~~W~rrwfvl~~~~l~y~~~~~~~~~~~~~l~~~~-v~~~~~~~r~~cF~i~~~~~~~~~ 376 (407)
T 4h8s_A 298 RNLIQKAGYLNLRNKTGLVTTTWERLYFFTQGGNLMCQPRGAVAGGLIQDLDNCS-VMAVDCEDRRYCFQITTPNGKSGI 376 (407)
T ss_dssp CSCSCCEEEEEEEEECSSSCEEEEEEEEEECSSCEECCCTTCSSCCCCBCSSCCE-EEEECCTTCSSEEEEECTTSSCCE
T ss_pred CCcceeeceeeeeccCCCCCCCceEEEEEEECCEEEEEeCCCCCCCeEEECCceE-EEECCCCCCCceEEEEecCCCceE
Confidence 345667787755421 1 25699999999999998643322 22 223333442 2334456789999986521 1123
Q ss_pred EEecCChhhhhHHHHhe
Q psy3407 620 LFAAPDESQLFDWLQDI 636 (749)
Q Consensus 620 ~~~~~~~~~~~~~~~~~ 636 (749)
.|.|.+|..+-+|++-|
T Consensus 377 ~l~A~s~~e~~~Wi~ai 393 (407)
T 4h8s_A 377 ILQAESRKENEEWICAI 393 (407)
T ss_dssp EEECSSSHHHHHHHHHH
T ss_pred EEEcCCHHHHHHHHHHH
Confidence 56677777777777654
No 198
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold, oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens} PDB: 3h8i_A*
Probab=27.08 E-value=65 Score=33.88 Aligned_cols=59 Identities=24% Similarity=0.232 Sum_probs=39.1
Q ss_pred hhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcC
Q psy3407 112 LEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSG 178 (749)
Q Consensus 112 L~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SG 178 (749)
+....++.+++++.+ .|+++..++ + .|++.+..+...++.+ +.||+|.|+ .|+.....|
T Consensus 62 ~~~~~~~~gv~~~~~-~v~~i~~~~-~---~V~~~~g~~~~~~~~~-d~lViAtG~--~~~~~~ipG 120 (409)
T 3h8l_A 62 LSEALPEKGIQFQEG-TVEKIDAKS-S---MVYYTKPDGSMAEEEY-DYVIVGIGA--HLATELVKG 120 (409)
T ss_dssp HHHHTGGGTCEEEEC-EEEEEETTT-T---EEEEECTTSCEEEEEC-SEEEECCCC--EECGGGSBT
T ss_pred HHHHHhhCCeEEEEe-eEEEEeCCC-C---EEEEccCCcccceeeC-CEEEECCCC--CcCccCCCC
Confidence 334445668999987 899987762 3 3555543445567888 999999997 555443333
No 199
>1xdi_A RV3303C-LPDA; reductase, FAD, NAD, NADP, unkno function; HET: FAD; 2.81A {Mycobacterium tuberculosis} SCOP: c.3.1.5 d.87.1.1
Probab=26.46 E-value=52 Score=35.94 Aligned_cols=56 Identities=14% Similarity=0.204 Sum_probs=38.0
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrL 173 (749)
.+....++.|++|++++.|.+|.-+ ++++ .+...+|+ ++.+ +.||+|+|..-...+
T Consensus 228 ~l~~~l~~~GV~i~~~~~V~~i~~~-~~~v---~v~~~~g~--~i~a-D~Vv~a~G~~p~~~~ 283 (499)
T 1xdi_A 228 VLEESFAERGVRLFKNARAASVTRT-GAGV---LVTMTDGR--TVEG-SHALMTIGSVPNTSG 283 (499)
T ss_dssp HHHHHHHHTTCEEETTCCEEEEEEC-SSSE---EEEETTSC--EEEE-SEEEECCCEEECCSS
T ss_pred HHHHHHHHCCCEEEeCCEEEEEEEe-CCEE---EEEECCCc--EEEc-CEEEECCCCCcCCCc
Confidence 3444455678999999999999876 3332 33333564 4677 889999997644444
No 200
>1btk_A Bruton'S tyrosine kinase; transferase, PH domain, BTK motif, zinc binding, X-linked agammaglobulinemia, tyrosine-protein kinase; 1.60A {Homo sapiens} SCOP: b.55.1.1 PDB: 1b55_A* 2z0p_A* 1bwn_A*
Probab=25.24 E-value=76 Score=30.06 Aligned_cols=35 Identities=23% Similarity=0.490 Sum_probs=19.1
Q ss_pred CceeEEEecccceEEEEecCChhhhhHHHHheeeEE
Q psy3407 605 RPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIMISI 640 (749)
Q Consensus 605 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 640 (749)
+||.|+|...-..|.| .|++|.+.-+|++.|.-.|
T Consensus 97 ~~~~F~I~t~~rt~yl-~A~s~~E~~eWi~aI~~~i 131 (169)
T 1btk_A 97 FPYPFQVVYDEGPLYV-FSPTEELRKRWIHQLKNVI 131 (169)
T ss_dssp CCEEEEEEETTCCEEE-EESCHHHHHHHHHHHHHHH
T ss_pred ccccEEEEeCCceEEE-EcCCHHHHHHHHHHHHHHH
Confidence 3577776554444443 3455666666666554333
No 201
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A {Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A* 2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Probab=24.91 E-value=38 Score=37.59 Aligned_cols=54 Identities=24% Similarity=0.408 Sum_probs=38.1
Q ss_pred eEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhhcCC
Q psy3407 121 LIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGI 179 (749)
Q Consensus 121 LtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~SGI 179 (749)
.+|+.++.|+++.+++++....|+. .+|+ +++| +.||+|.|+...|++.-.-|+
T Consensus 111 ~~i~~~~~V~~~~~~~~~~~w~V~~--~~G~--~~~a-d~vV~AtG~~s~p~~p~i~G~ 164 (542)
T 1w4x_A 111 SGITFHTTVTAAAFDEATNTWTVDT--NHGD--RIRA-RYLIMASGQLSVPQLPNFPGL 164 (542)
T ss_dssp GGEECSCCEEEEEEETTTTEEEEEE--TTCC--EEEE-EEEEECCCSCCCCCCCCCTTG
T ss_pred ceEEcCcEEEEEEEcCCCCeEEEEE--CCCC--EEEe-CEEEECcCCCCCCCCCCCCCc
Confidence 4688899999999874333333443 3565 4677 899999999888876544443
No 202
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A {Lactobacillus sanfranciscensis}
Probab=24.71 E-value=42 Score=36.04 Aligned_cols=57 Identities=18% Similarity=0.142 Sum_probs=40.6
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
.+....++.+++|++++.|.+|.-+ ++++++|.. +|+ ++.+ ..||+|.|..-...+|
T Consensus 196 ~l~~~l~~~Gv~i~~~~~v~~i~~~-~~~v~~v~~---~g~--~i~~-D~vv~a~G~~p~~~ll 252 (452)
T 2cdu_A 196 ILAKDYEAHGVNLVLGSKVAAFEEV-DDEIITKTL---DGK--EIKS-DIAILCIGFRPNTELL 252 (452)
T ss_dssp HHHHHHHHTTCEEEESSCEEEEEEE-TTEEEEEET---TSC--EEEE-SEEEECCCEEECCGGG
T ss_pred HHHHHHHHCCCEEEcCCeeEEEEcC-CCeEEEEEe---CCC--EEEC-CEEEECcCCCCCHHHH
Confidence 3444455678999999999999864 356666653 564 4677 8899999976555554
No 203
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural genomics, NPPSFA, project on protein structural and functional analyses; HET: FAD; 2.10A {Thermus thermophilus}
Probab=24.47 E-value=89 Score=31.30 Aligned_cols=57 Identities=18% Similarity=0.119 Sum_probs=36.5
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCC-ChHHH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVG-SPQLL 174 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIe-TPrLL 174 (749)
+|....++.+++++.++.|++|..++ + .+++...+|+ .+++ +.||+|.|+-. .|+.+
T Consensus 70 ~l~~~~~~~~~~~~~~~~v~~i~~~~-~---~~~v~~~~g~--~~~~-~~lv~AtG~~~~~p~~~ 127 (335)
T 2zbw_A 70 GLVEQVAPFNPVYSLGERAETLEREG-D---LFKVTTSQGN--AYTA-KAVIIAAGVGAFEPRRI 127 (335)
T ss_dssp HHHHHHGGGCCEEEESCCEEEEEEET-T---EEEEEETTSC--EEEE-EEEEECCTTSEEEECCC
T ss_pred HHHHHHHHcCCEEEeCCEEEEEEECC-C---EEEEEECCCC--EEEe-CEEEECCCCCCCCCCCC
Confidence 44333445578999999999998763 2 3334333554 3667 88999999742 34443
No 204
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding, para-hydroxy-benzoate-hydroxylase fold (PHBH- fold), monotopic membrane-binding domain; HET: FAD OMN TON; 2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Probab=24.43 E-value=15 Score=39.84 Aligned_cols=53 Identities=9% Similarity=0.080 Sum_probs=35.7
Q ss_pred eEEEcccEEEEEEeCCCCc----EEEEEEEecCCeE-EEEEeccEEEEccCCCCChHHH
Q psy3407 121 LIILKNTEVIKILIDSKLK----AYGVEYINSQGKI-CHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 121 LtIlT~a~V~RIl~d~ggr----AtGV~y~d~~G~~-~~V~ArKeVILAAGAIeTPrLL 174 (749)
.+|++++.|++|..++++. .+.|.+.+.+|.. ..++| +.||+++..-...+||
T Consensus 256 ~~i~~~~~V~~I~~~~~~~~~~~~~~v~~~~~~g~~~~~~~a-d~VI~a~p~~~l~~ll 313 (504)
T 1sez_A 256 DELRLNSRVLELSCSCTEDSAIDSWSIISASPHKRQSEEESF-DAVIMTAPLCDVKSMK 313 (504)
T ss_dssp TTEETTCCEEEEEEECSSSSSSCEEEEEEBCSSSSCBCCCEE-SEEEECSCHHHHHTSE
T ss_pred ceEEcCCeEEEEEecCCCCcccceEEEEEcCCCCccceeEEC-CEEEECCCHHHHHHHh
Confidence 5799999999999874332 3677775434532 35677 8899998754433333
No 205
>2gag_A Heterotetrameric sarcosine oxidase alpha-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_A* 1x31_A* 1vrq_A* 3ad7_A* 3ad8_A* 3ad9_A* 3ada_A*
Probab=24.33 E-value=71 Score=38.49 Aligned_cols=61 Identities=8% Similarity=0.080 Sum_probs=45.4
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEe--c---CCeEEEEEeccEEEEccCCCCChHHHhhcC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYIN--S---QGKICHVNSTREVILSAGAVGSPQLLMLSG 178 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d--~---~G~~~~V~ArKeVILAAGAIeTPrLLL~SG 178 (749)
++.+++|++++.|.+|.-++++++++|++.+ . +|+..++.+ ..||+|.|..-...||...|
T Consensus 327 ~~~GV~v~~~~~v~~i~~~~~~~v~~v~~~~~~~~~~~G~~~~i~~-D~Vv~a~G~~P~~~l~~~~~ 392 (965)
T 2gag_A 327 VADGVQVISGSVVVDTEADENGELSAIVVAELDEARELGGTQRFEA-DVLAVAGGFNPVVHLHSQRQ 392 (965)
T ss_dssp HHTTCCEEETEEEEEEEECTTSCEEEEEEEEECTTCCEEEEEEEEC-SEEEEECCEEECCHHHHHTT
T ss_pred HhCCeEEEeCCEeEEEeccCCCCEEEEEEEeccccCCCCceEEEEc-CEEEECCCcCcChHHHHhCC
Confidence 4568999999999999864236788999875 2 255567888 89999999765556665443
No 206
>3h28_A Sulfide-quinone reductase; monotopic membrane protein, flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A* 3hyv_A* 3hyw_A* 3hyx_A*
Probab=23.71 E-value=85 Score=33.38 Aligned_cols=62 Identities=18% Similarity=0.171 Sum_probs=41.4
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHHhh-cCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLML-SGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLLL~-SGI 179 (749)
.+....++.|+++++++.|++|.-+ +|.+.+.+++..++.+ ..||++.|....+.+... +|+
T Consensus 205 ~l~~~l~~~GV~i~~~~~v~~v~~~------~v~~~~~~~~g~~i~~-D~vv~a~G~~~~~~l~~~~~gl 267 (430)
T 3h28_A 205 LVEDLFAERNIDWIANVAVKAIEPD------KVIYEDLNGNTHEVPA-KFTMFMPSFQGPEVVASAGDKV 267 (430)
T ss_dssp HHHHHHHHTTCEEECSCEEEEECSS------EEEEECTTSCEEEEEC-SEEEEECEEECCHHHHTTCTTT
T ss_pred HHHHHHHHCCCEEEeCCEEEEEeCC------eEEEEecCCCceEEee-eEEEECCCCccchhHhhccccC
Confidence 4545556779999999999998532 2455443455567788 889999987655433333 454
No 207
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis, chlorophyll biosynthesis, oxidoreductase, HAEM biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A {Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Probab=23.41 E-value=62 Score=34.52 Aligned_cols=50 Identities=14% Similarity=0.116 Sum_probs=33.5
Q ss_pred CeEEEcccEEEEEEeCCCCcEEEEEEEe-cCCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 120 NLIILKNTEVIKILIDSKLKAYGVEYIN-SQGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 120 NLtIlT~a~V~RIl~d~ggrAtGV~y~d-~~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
+.+|++++.|++|..++ ++ ++|++.+ .+|+ +++| +.||+|+++-...+||
T Consensus 249 g~~i~~~~~V~~i~~~~-~~-~~v~~~~~~~g~--~~~a-d~vV~a~~~~~~~~ll 299 (478)
T 2ivd_A 249 GDAAHVGARVEGLARED-GG-WRLIIEEHGRRA--ELSV-AQVVLAAPAHATAKLL 299 (478)
T ss_dssp GGGEESSEEEEEEECC---C-CEEEEEETTEEE--EEEC-SEEEECSCHHHHHHHH
T ss_pred hhhEEcCCEEEEEEecC-Ce-EEEEEeecCCCc--eEEc-CEEEECCCHHHHHHHh
Confidence 35899999999998873 33 5566532 2343 5778 8999999865444444
No 208
>1gte_A Dihydropyrimidine dehydrogenase; electron transfer, flavin, iron-sulfur clusters, pyrimidine catabolism, 5-fluorouracil degradation, oxidoreductase; HET: FMN FAD; 1.65A {Sus scrofa} SCOP: a.1.2.2 c.1.4.1 c.3.1.1 c.4.1.1 d.58.1.5 PDB: 1gt8_A* 1gth_A* 1h7w_A* 1h7x_A*
Probab=23.15 E-value=1e+02 Score=37.37 Aligned_cols=61 Identities=23% Similarity=0.330 Sum_probs=44.6
Q ss_pred cCCCeEEEcccEEEEEEeCCCCcEEEEEEEe----cCC-------eEEEEEeccEEEEccCCC-CChHHHhh-cCC
Q psy3407 117 FRENLIILKNTEVIKILIDSKLKAYGVEYIN----SQG-------KICHVNSTREVILSAGAV-GSPQLLML-SGI 179 (749)
Q Consensus 117 ~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d----~~G-------~~~~V~ArKeVILAAGAI-eTPrLLL~-SGI 179 (749)
+..++++++++.+.+|..+ ++++++|++.+ .+| ...++.| ..||+|.|.. .++.|+.- +|+
T Consensus 381 ~~~Gv~~~~~~~~~~i~~~-~g~v~~v~~~~~~~~~~g~~~~~~g~~~~i~a-D~Vi~A~G~~~~~~~l~~~~~gl 454 (1025)
T 1gte_A 381 KEEKCEFLPFLSPRKVIVK-GGRIVAVQFVRTEQDETGKWNEDEDQIVHLKA-DVVISAFGSVLRDPKVKEALSPI 454 (1025)
T ss_dssp HHTTCEEECSEEEEEEEEE-TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEC-SEEEECSCEECCCHHHHHHTTTS
T ss_pred HHcCCEEEeCCCceEEEcc-CCeEEEEEEEEeEEcCCCCcccCCCceEEEEC-CEEEECCCCCCCchhhhhcccCc
Confidence 3468999999999999875 57899998752 123 3456788 8999999984 45666654 465
No 209
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm, FAD, flavoprotein, oxidoreductase, porphyrin biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Probab=23.02 E-value=60 Score=34.22 Aligned_cols=47 Identities=19% Similarity=0.203 Sum_probs=32.6
Q ss_pred eEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChHHH
Q psy3407 121 LIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLL 174 (749)
Q Consensus 121 LtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPrLL 174 (749)
.+|++++.|++|..++ ++ |.+...+|+ +++| +.||+|+.+-...+||
T Consensus 248 ~~i~~~~~V~~i~~~~-~~---~~v~~~~g~--~~~a-d~vi~a~p~~~~~~l~ 294 (470)
T 3i6d_A 248 TKVYKGTKVTKLSHSG-SC---YSLELDNGV--TLDA-DSVIVTAPHKAAAGML 294 (470)
T ss_dssp EEEECSCCEEEEEECS-SS---EEEEESSSC--EEEE-SEEEECSCHHHHHHHT
T ss_pred CEEEeCCceEEEEEcC-Ce---EEEEECCCC--EEEC-CEEEECCCHHHHHHHc
Confidence 6999999999999874 33 333333675 3677 8899998765444443
No 210
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase, flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A* 2yau_A* 2x50_A* 2ve2_A*
Probab=22.64 E-value=56 Score=35.74 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=36.8
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAV 168 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAI 168 (749)
.+...+++.+++|++++.|.+|.-++++ ...|++ .+|+ ++.+ ..||+|+|..
T Consensus 236 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~-~~~v~~--~~G~--~i~~-D~vv~a~G~~ 287 (490)
T 1fec_A 236 QLTEQLRANGINVRTHENPAKVTKNADG-TRHVVF--ESGA--EADY-DVVMLAIGRV 287 (490)
T ss_dssp HHHHHHHHTTEEEEETCCEEEEEECTTS-CEEEEE--TTSC--EEEE-SEEEECSCEE
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEcCCC-EEEEEE--CCCc--EEEc-CEEEEccCCC
Confidence 3434455678999999999999876333 344554 2565 5677 8999999964
No 211
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis, sleeping sickness, flavoPro redox-active center; HET: FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A* 2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A* 1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Probab=22.26 E-value=67 Score=35.25 Aligned_cols=63 Identities=17% Similarity=0.285 Sum_probs=41.2
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH-H-HhhcCC
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ-L-LMLSGI 179 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr-L-LL~SGI 179 (749)
.+....++.++++++++.|.+|.-+++ ....|++. +|+ ++.+ ..||+|+|..-... | |..+|+
T Consensus 240 ~l~~~l~~~GV~i~~~~~v~~i~~~~~-~~~~v~~~--~G~--~i~~-D~vv~a~G~~p~~~~L~l~~~gl 304 (495)
T 2wpf_A 240 EVTKQLTANGIEIMTNENPAKVSLNTD-GSKHVTFE--SGK--TLDV-DVVMMAIGRIPRTNDLQLGNVGV 304 (495)
T ss_dssp HHHHHHHHTTCEEEESCCEEEEEECTT-SCEEEEET--TSC--EEEE-SEEEECSCEEECCGGGTGGGTTC
T ss_pred HHHHHHHhCCCEEEeCCEEEEEEEcCC-ceEEEEEC--CCc--EEEc-CEEEECCCCcccccccchhhcCc
Confidence 343445567899999999999987632 33455542 565 5777 89999999653333 3 334444
No 212
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA, persulfide reductase, rhodanese; HET: COA FAD; 1.99A {Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Probab=21.99 E-value=87 Score=34.43 Aligned_cols=63 Identities=17% Similarity=0.189 Sum_probs=43.1
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeC------------------CCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCChH
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILID------------------SKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQ 172 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d------------------~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTPr 172 (749)
++....++.++++++++.|.+|..+ ++++++ |.. .+|+ .+.+ ..||+|.|..-...
T Consensus 197 ~l~~~l~~~GV~i~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~--~~g~--~i~~-D~vi~a~G~~p~~~ 270 (565)
T 3ntd_A 197 FAHQAIRDQGVDLRLGTALSEVSYQVQTHVASDAAGEDTAHQHIKGHLS-LTL--SNGE--LLET-DLLIMAIGVRPETQ 270 (565)
T ss_dssp HHHHHHHHTTCEEEETCCEEEEEEECCCCCCCGGGTCCCTTCCTTCEEE-EEE--TTSC--EEEE-SEEEECSCEEECCH
T ss_pred HHHHHHHHCCCEEEeCCeEEEEeccccccccccccccccccccCCCcEE-EEE--cCCC--EEEc-CEEEECcCCccchH
Confidence 3444455678999999999999862 123332 333 3665 5677 88999999876666
Q ss_pred HHhhcCC
Q psy3407 173 LLMLSGI 179 (749)
Q Consensus 173 LLL~SGI 179 (749)
+|..+|+
T Consensus 271 l~~~~g~ 277 (565)
T 3ntd_A 271 LARDAGL 277 (565)
T ss_dssp HHHHHTC
T ss_pred HHHhCCc
Confidence 7766665
No 213
>3pg7_A Neurofibromin; SEC lipid binding domain, PH domain, lipid binding protein; HET: PTY; 2.19A {Homo sapiens} PDB: 2e2x_A* 3p7z_A* 2d4q_A*
Probab=21.70 E-value=13 Score=38.07 Aligned_cols=51 Identities=18% Similarity=0.273 Sum_probs=39.8
Q ss_pred hccCCceeehhhhheeeeEeecCccccceeeccCCceeeeeeeeeeecCCcc
Q psy3407 414 NKYGEPVMLFLTRRLLIMYNVNTENYKSLVLKDMDNIVVGEHTVSFDCKGAA 465 (749)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 465 (749)
.+.|.||+.|..||+-. -..+.|+.--.+++-+|.++-..|.+-+||.|..
T Consensus 19 d~dGrpViv~~~~~l~~-~~~D~e~Ll~~vl~tl~~~~~~~y~lV~d~T~~~ 69 (256)
T 3pg7_A 19 SKAGNPIFYYVARRFKT-GQINGDLLIYHVLLTLKPYYAKPYEIVVDLTHTG 69 (256)
T ss_dssp CTTSCEEEEEEGGGCCB-TTBCHHHHHHHHHHHHTTTTTSCEEEEEECTTCC
T ss_pred CCCCCEEEEEEeecCCC-CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCCCC
Confidence 57899999999999853 2344444444567888999999999999998864
No 214
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A {Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Probab=21.11 E-value=1.1e+02 Score=33.44 Aligned_cols=56 Identities=23% Similarity=0.285 Sum_probs=37.9
Q ss_pred hhhhhccCCCeEEEcccEEEEEEeCCCCcEEEEEEEecCCeEEEEEeccEEEEccCCCCCh
Q psy3407 111 FLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSP 171 (749)
Q Consensus 111 yL~pa~~r~NLtIlT~a~V~RIl~d~ggrAtGV~y~d~~G~~~~V~ArKeVILAAGAIeTP 171 (749)
.+....++.++++++++.|.+|.-++++. ..|++ .+|++ .+.+ ..||+|.|..-..
T Consensus 222 ~l~~~l~~~gv~i~~~~~v~~i~~~~~~~-~~v~~--~~g~~-~~~~-D~vi~a~G~~p~~ 277 (500)
T 1onf_A 222 VLENDMKKNNINIVTFADVVEIKKVSDKN-LSIHL--SDGRI-YEHF-DHVIYCVGRSPDT 277 (500)
T ss_dssp HHHHHHHHTTCEEECSCCEEEEEESSTTC-EEEEE--TTSCE-EEEE-SEEEECCCBCCTT
T ss_pred HHHHHHHhCCCEEEECCEEEEEEEcCCce-EEEEE--CCCcE-EEEC-CEEEECCCCCcCC
Confidence 33344556789999999999998753332 34444 36754 4777 8999999965333
No 215
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction; 1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Probab=21.10 E-value=58 Score=28.06 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=19.8
Q ss_pred ccCCCchhhhhHHHHHhhheeecCcchhhhcccccc
Q psy3407 653 FAAPDESQLFDWLQDIMISIKINDDKVISFMRSAPF 688 (749)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (749)
|.|.++.++-+|++.++..|... ......-||+||
T Consensus 89 l~a~s~~e~~~Wi~al~~a~~~~-~~~~~~~r~~ar 123 (123)
T 1upq_A 89 LAADTLEDLRGWLRALGRASRAE-GDDYGQPRSPAR 123 (123)
T ss_dssp EECSSHHHHHHHHHHHHHHHC---------------
T ss_pred EECCCHHHHHHHHHHHHHHHhcc-cCCCCCCCCCCC
Confidence 88999999999999999988765 445555566654
No 216
>1cjc_A Protein (adrenodoxin reductase); flavoenzyme, MAD analysis, electron transferase, oxidoreductase; HET: FAD; 1.70A {Bos taurus} SCOP: c.3.1.1 c.4.1.1 PDB: 1e1k_A* 1e1l_A* 1e1m_A* 1e1n_A* 1e6e_A*
Probab=20.94 E-value=1.3e+02 Score=32.67 Aligned_cols=52 Identities=15% Similarity=0.135 Sum_probs=40.1
Q ss_pred CCeEEEcccEEEEEEeCCCC-cEEEEEEEec-------------CCeEEEEEeccEEEEccCCCCCh
Q psy3407 119 ENLIILKNTEVIKILIDSKL-KAYGVEYINS-------------QGKICHVNSTREVILSAGAVGSP 171 (749)
Q Consensus 119 ~NLtIlT~a~V~RIl~d~gg-rAtGV~y~d~-------------~G~~~~V~ArKeVILAAGAIeTP 171 (749)
.++++++++.+.+|.-++++ ++++|++.+. +|+...+.+ ..||+|.|.--.+
T Consensus 270 ~gv~~~~~~~~~~i~~~~~~~~v~~v~~~~~~l~~~~~~~~~~~~g~~~~i~~-d~Vi~a~G~~p~~ 335 (460)
T 1cjc_A 270 RAWGLRFFRSPQQVLPSPDGRRAAGIRLAVTRLEGIGEATRAVPTGDVEDLPC-GLVLSSIGYKSRP 335 (460)
T ss_dssp EEEEEECSEEEEEEEECTTSSSEEEEEEEEEEEESSGGGCEEEEEEEEEEEEC-SEEEECCCEECCC
T ss_pred ceEEEECCCChheEEcCCCCceEEEEEEEEEEEccccCCCcccCCCceEEEEc-CEEEECCCCCCCC
Confidence 67999999999999765335 8889988631 355567888 8999999977665
Done!