RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3407
(749 letters)
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 279 bits (716), Expect = 5e-85
Identities = 70/276 (25%), Positives = 113/276 (40%), Gaps = 20/276 (7%)
Query: 1 MLYQRGNDRDYNDWERA-GNPGWGFKHILPYFLKSEDFQDIS--------RQDAAFHNTG 51
+ R + + WE GN GW + ++ Y L++E + + +A+ H
Sbjct: 109 GTWTRPHKAQVDSWETVFGNEGWNWDNVAAYSLQAERARAPNAKQIAAGHYFNASCHGVN 168
Query: 52 GYLTVSPRLSPDETVKIIEA---AGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCST 107
G + PR + D+ I++A A ++ + T D G F T +R
Sbjct: 169 GTVHAGPRDTGDDYSPIVKALMSAVEDRGVPTKKDFGCGDPHGVSMFPNTLHEDQVRSDA 228
Query: 108 SKAFLEPAKFRENLIILKNTEVIKILID---SKLKAYGVEYINSQGKICHVNSTREVILS 164
++ +L P R NL +L V K+L+ + +A GVE+ +G +V + EV+L+
Sbjct: 229 AREWLLPNYQRPNLQVLTGQYVGKVLLSQNGTTPRAVGVEFGTHKGNTHNVYAKHEVLLA 288
Query: 165 AGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLPVGENLQDHVCFPGVLFSSNKDPAITLH 224
AG+ SP +L SGIG++ L+ I + DLPVG NLQD V A
Sbjct: 289 AGSAVSPTILEYSGIGMKSILEPLGIDTVVDLPVGLNLQDQTTA-TVRSRITSAGAGQGQ 347
Query: 225 YLRYLKVAALKGISTVEVAKVVGFINTKRNSLYPNV 260
+ G K +NTK
Sbjct: 348 AAWFATFNETFG---DYSEKAHELLNTKLEQWAEEA 380
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 279 bits (716), Expect = 6e-85
Identities = 60/250 (24%), Positives = 99/250 (39%), Gaps = 17/250 (6%)
Query: 1 MLYQRGNDRDYNDWERA-GNPGWGFKHILPYFLKSEDFQ--------DISRQDAAFHNTG 51
+ R + + WE+ G GW + ++ Y K+E + +A H T
Sbjct: 113 DSWTRPDKVQIDSWEKVFGMEGWNWDNMFEYMKKAEAARTPTAAQLAAGHSFNATCHGTN 172
Query: 52 GYLTVSPRLSPDETVKIIEA---AGKELKIGTMYDINRDQYIGFGPFD-TTTRYGLRCST 107
G + R + I++A L + D G +R
Sbjct: 173 GTVQSGARDNGQPWSPIMKALMNTVSALGVPVQQDFLCGHPRGVSMIMNNLDENQVRVDA 232
Query: 108 SKAFLEPAKFRENLIILKNTEVIKILIDSK---LKAYGVEYINSQGKICHVNSTREVILS 164
++A+L P R NL IL V K+L +A GV + ++ V + EV+L+
Sbjct: 233 ARAWLLPNYQRSNLEILTGQMVGKVLFKQTASGPQAVGVNFGTNKAVNFDVFAKHEVLLA 292
Query: 165 AGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLPVGENLQDHVCFPGVLFSSNKDPAITLH 224
AG+ SP +L SGIG++ L + N+T + DLPVG N+QD V ++ A
Sbjct: 293 AGSAISPLILEYSGIGLKSVLDQANVTQLLDLPVGINMQDQTTT-TVSSRASSAGAGQGQ 351
Query: 225 YLRYLKVAAL 234
+ +
Sbjct: 352 AVFFANFTET 361
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 274 bits (704), Expect = 2e-83
Identities = 70/281 (24%), Positives = 111/281 (39%), Gaps = 29/281 (10%)
Query: 1 MLYQRGNDRDYNDWER-AGNPGWGFKHILPYFLKSEDFQ-------DISRQDAAFHNTGG 52
M+ RG+ D++ + G+ GW + +I + K+E A H T G
Sbjct: 93 MVMMRGSTEDFDRYAAVTGDEGWNWDNIQQFVRKNEMVVPPADNHNTSGEFIPAVHGTNG 152
Query: 53 YLTVSPRLSPDETVKIIEAAGKELKIGTMY----DINRDQYIGFGPFDTTTRYGLRCSTS 108
+++S P + A +E + D+ +G + G R S+S
Sbjct: 153 SVSISLPGFPTPLDDRVLATTQEQ--SEEFFFNPDMGTGHPLGISWSIASVGNGQRSSSS 210
Query: 109 KAFLEPAKFRENLIILKNTEVIKILIDSKLK------AYGVEYINSQGKICHVNSTREVI 162
A+L PA+ R NL +L N +V K++ V + +EV+
Sbjct: 211 TAYLRPAQSRPNLSVLINAQVTKLVNSGTTNGLPAFRCVEYAE-QEGAPTTTVCAKKEVV 269
Query: 163 LSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAI 221
LSAG+VG+P LL LSGIG + L I I + P VG NL DH+ P F ++
Sbjct: 270 LSAGSVGTPILLQLSGIGDENDLSSVGIDTIVNNPSVGRNLSDHLLLPAAFFVNSNQTFD 329
Query: 222 TLHYLRYLKVAAL-------KGISTVEVAKVVGFINTKRNS 255
+ L G T +A + ++ NS
Sbjct: 330 NIFRDSSEFNVDLDQWTNTRTGPLTALIANHLAWLRLPSNS 370
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 272 bits (699), Expect = 1e-82
Identities = 65/269 (24%), Positives = 105/269 (39%), Gaps = 22/269 (8%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQ---DISRQDAAFHNTGGYLTVS 57
+ G+ ++ WE G W + ++PY KS + + + GG + +S
Sbjct: 99 FTWVPGHKATFDQWEEFGGKEWTWDPLVPYLRKSATYHDDPRLYSPELEKIGGGGPIPIS 158
Query: 58 PRLSPDETVKIIEA---AGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEP 114
DE E A K + + +I + G T G R +FL
Sbjct: 159 HAELIDEMAPFRENLTKAWKSMGQPLIENIYDGEMDGLTHCCDTIYRGQRSG---SFL-F 214
Query: 115 AKFRENLIILKNTEVIKILIDSKLK-AYGVEYINSQGKICHVNSTREVILSAGAVGSPQL 173
K + N+ I+ +++I+ + GV + + G + + REVILS G +P+L
Sbjct: 215 VKNKPNITIVPEVHSKRLIINEADRTCKGVTVVTAAGNELNFFADREVILSQGVFETPKL 274
Query: 174 LMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNK----DPAITLHYLRY 228
LMLSGIG + L I I D VG+NL DH P + D + H +
Sbjct: 275 LMLSGIGPTRELSRHGINTIVDSRHVGQNLMDHPGVP-FVLRVKDGFGMDDVLLRHGPKR 333
Query: 229 LKVAAL-----KGISTVEVAKVVGFINTK 252
V + G + ++VGF
Sbjct: 334 DAVVSAYNKNRSGPVGSGLLELVGFPRID 362
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 262 bits (672), Expect = 6e-79
Identities = 69/290 (23%), Positives = 120/290 (41%), Gaps = 23/290 (7%)
Query: 1 MLYQRGNDRDYNDWE-RAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPR 59
+ D ++WE + G GW + P + + E +D DA H G + +
Sbjct: 102 CIAFWAPREDLDEWEAKYGATGWNAEAAWPLYKRLETNEDAG-PDAPHHGDSGPVHLMNV 160
Query: 60 LSPDETVKIIEAAGKELKIGTMYDIN-RDQYIGFGPFDTTTRY-GLRCSTSKAFLEPAKF 117
D T + A ++ I G F R G R S+S +++ P
Sbjct: 161 PPKDPTGVALLDACEQAGIPRAKFNTGTTVVNGANFFQINRRADGTRSSSSVSYIHPIVE 220
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYI-NSQGKICHVNSTREVILSAGAVGSPQLLML 176
+EN +L +++ D+ + GV+ + ++ G + + EV+LS GA+ +P+LLML
Sbjct: 221 QENFTLLTGLRARQLVFDADRRCTGVDIVDSAFGHTHRLTARNEVVLSTGAIDTPKLLML 280
Query: 177 SGIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNKDPAITLHYLRYLKVAALK 235
SGIG HL E I V+ D P VGE+LQDH V F + + + ++ ++
Sbjct: 281 SGIGPAAHLAEHGIEVLVDSPGVGEHLQDHPEGV-VQFEAKQ--PMVAESTQWWEIG--- 334
Query: 236 GISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGKSVMGSLF 285
F T+ P++ + +P + +G + F
Sbjct: 335 -----------IFTPTEDGLDRPDLMMHYGSVPFDMNTLRHGYPTTENGF 373
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 255 bits (653), Expect = 2e-76
Identities = 64/221 (28%), Positives = 102/221 (46%), Gaps = 10/221 (4%)
Query: 1 MLYQRGNDRDYNDW-ERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVS-P 58
M Y RG+ D+ W + +G+ WG+ +LP F ED H GG L + P
Sbjct: 106 MGYMRGHPSDFQAWVDASGDRRWGWDELLPVFQAIEDHP---LGGDGIHGKGGPLPIHLP 162
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPA-KF 117
+ AG L + + N + IG P R G R + + A+L A +
Sbjct: 163 ADEVSPLARAFIEAGASLGLPRLEGHNSGEMIGVTPNSLNIRDGRRVTAADAWLTKAVRG 222
Query: 118 RENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLS 177
R+NL IL + V ++ ++ + +E + + +++L AGA+ SP LLM S
Sbjct: 223 RKNLTILTGSRVRRLKLEGN-QVRSLEVV--GRQGSAEVFADQIVLCAGALESPALLMRS 279
Query: 178 GIGIQKHLKEKNITVIKDLP-VGENLQDHVCFPGVLFSSNK 217
GIG L + + D+P +G NLQDH+ G L+++ K
Sbjct: 280 GIGPHDVLDAAGVGCLIDMPDIGRNLQDHLLGAGNLYAARK 320
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 229 bits (587), Expect = 6e-67
Identities = 52/214 (24%), Positives = 74/214 (34%), Gaps = 34/214 (15%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRL 60
+Y R N Y+ W + + ED +
Sbjct: 112 GVYARANTSIYSAS----GVDWDMDLVNQTYEWVED-------TIVYKPNSQ-----SWQ 155
Query: 61 SPDETVKIIEA---AGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKF 117
S A AG + + D G +T + L
Sbjct: 156 SV-----TKTAFLEAGVHPN----HGFSLDHEEGTRITGSTFDNKGTRHAADELLNKGN- 205
Query: 118 RENLIILKNTEVIKILID--SKLKAYGVEYI--NSQGKICHVNSTREVILSAGAVGSPQL 173
NL + + V KI+ L A GV Y N V S EVI+SAG +G+PQL
Sbjct: 206 SNNLRVGVHASVEKIIFSNAPGLTATGVIYRDSNGTPHQAFVRSKGEVIVSAGTIGTPQL 265
Query: 174 LMLSGIGIQKHLKEKNITVIKDLP-VGENLQDHV 206
L+LSG+G + +L NI V+ P VG+ L D+
Sbjct: 266 LLLSGVGPESYLSSLNIPVVLSHPYVGQFLHDNP 299
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 227 bits (580), Expect = 8e-66
Identities = 47/224 (20%), Positives = 75/224 (33%), Gaps = 30/224 (13%)
Query: 1 MLYQRGNDRDYNDWERAGNPGW--GFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSP 58
LY ND D++ + GW + + PY K +T G +
Sbjct: 102 ALYWYPNDGDFS-----SSVGWPSSWTNHAPYTSKLSSRLP----STDHPSTDGQRYLEQ 152
Query: 59 RLSPDETVKIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFR 118
S + ++++ G T+ D + FG G R +L+ A R
Sbjct: 153 --SFNVVSQLLKGQG--YNQATINDNPNYKDHVFGYSAFDFLNGKRAGPVATYLQTALAR 208
Query: 119 ENLIILKNTEVIKILIDSKLKAYGVEYINS---QGKICHVNSTREVILSAGAVGSPQLLM 175
N N V ++ + + GV+ + V VILSAGA G+ ++L
Sbjct: 209 PNFTFKTNVMVSNVVRNGS-QILGVQTNDPTLGPNGFIPVTPKGRVILSAGAFGTSRILF 267
Query: 176 LSGIGIQKHLKEKNITVIKDLP-----------VGENLQDHVCF 208
SGIG ++ VG N QD+
Sbjct: 268 QSGIGPTDMIQTVQSNPTAAAALPPQNQWINLPVGMNAQDNPSI 311
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 75.3 bits (184), Expect = 4e-14
Identities = 90/653 (13%), Positives = 179/653 (27%), Gaps = 207/653 (31%)
Query: 182 QKHLKEKNI------TVIKDLPVGENLQDHVCFPGVLFSSN------KDPAITLHYLRYL 229
+ + K+I + + +++QD P + S LR
Sbjct: 13 EHQYQYKDILSVFEDAFVDNFDC-KDVQD---MPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 230 KVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGKSVMGSLFGQEV 289
K V+ F+ L N + L I K S+M ++ ++
Sbjct: 69 WTLLSKQEEMVQK-----FVEE---VLRINYKFLMSPI----KTEQRQPSMMTRMYIEQR 116
Query: 290 LVDDNDKDVIASPTNLT--AKVQTIFESFTKM-SETNININKKQFMSNMDK---VFETIK 343
ND V + N++ + ++ ++ N+ I+ + K +
Sbjct: 117 DRLYNDNQVF-AKYNVSRLQPYLKLRQALLELRPAKNVLIDG---VLGSGKTWVALDVCL 172
Query: 344 T-KFEPFAEGEIPIESRSSYW----NNNSDGT------------SKEACEMGKLGSSTPI 386
+ K + + +I +W N NS T S+ +
Sbjct: 173 SYKVQCKMDFKI-------FWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 387 KKHSVIT---------SNNNSLNLENILDNI----VFKVLN---KYGEPVMLFLTRRLLI 430
+ HS+ N L L +L N+ + N K +L TR +
Sbjct: 226 RIHSIQAELRRLLKSKPYENCL-L--VLLNVQNAKAWNAFNLSCK-----ILLTTRFKQV 277
Query: 431 MYNVNTENYKSLVLKDMDNIVVGEHTVSF---------------DCKGAANMTVISSI-- 473
++ + L + + S N +S I
Sbjct: 278 TDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTT--NPRRLSIIAE 335
Query: 474 ---------------DIDAVSTLISNVEIMCL--------KQHYT-----PSSV--SAKQ 503
+ D ++T+I L ++ + P S
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIE----SSLNVLEPAEYRKMFDRLSVFPPSAHIPTI- 390
Query: 504 RHTLMRLLEHISSQTQYFNKCDEII--LYSWSWIEQFSDISRTG-HDQVFRSGNLMYKIN 560
L + + ++ L+ +S +E+ S L K+
Sbjct: 391 --LLSLIWFDVIKSD-----VMVVVNKLHKYSLVEKQPKESTISIPSIYLE---LKVKLE 440
Query: 561 DKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVL 620
++ A L I+ + N PK Y Y + + +
Sbjct: 441 NEYA-------LHRSIV---DHYNIPKTF---DSDDLIPPYLDQ--YFY--SHIGHHLKN 483
Query: 621 FAAPDESQLF-------DWLQDIMISIKINDDKKILVGKFAAPDESQLFDWLQDIMI--- 670
P+ LF +L+ +KI A + + LQ +
Sbjct: 484 IEHPERMTLFRMVFLDFRFLE-----------QKIRHDSTAWNASGSILNTLQQLKFYKP 532
Query: 671 SIKINDDK-------VISFMRSA-------PFSAIIMVGALVCPDTIVGIIEA 709
I ND K ++ F+ ++ ++ + AL+ D + EA
Sbjct: 533 YICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRI-ALMAEDEAI-FEEA 583
Score = 63.3 bits (153), Expect = 2e-10
Identities = 85/676 (12%), Positives = 196/676 (28%), Gaps = 184/676 (27%)
Query: 13 DWERAGNPGWGFKHILPYFL----KSEDFQDISRQDAAFHNTGGYLTVSPR--LSPDETV 66
D+E G + +K IL F + D +D+ QD P+ LS +E
Sbjct: 8 DFE-TGEHQYQYKDILSVFEDAFVDNFDCKDV--QD------------MPKSILSKEEID 52
Query: 67 KIIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKN 126
II + ++ + + + F+E R N L +
Sbjct: 53 HIIMSKDAVSGTLRLFWTLLSK---------------QEEMVQKFVEEV-LRINYKFLMS 96
Query: 127 TEVIKILIDSKLKAYGVE-YINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIGIQKHL 185
I + + + YI + ++ + N + + V Q + +++ L
Sbjct: 97 ----PIKTEQRQPSMMTRMYIEQRDRLYNDNQ----VFAKYNVSRLQPYL----KLRQAL 144
Query: 186 KE----KNITVI------KDLPVGENLQDH---VCFPGVLFSSNKDPAITLHYLRYLKVA 232
E KN+ + K + + +F +L +
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--------------WLNLK 190
Query: 233 ALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGKSVMGSLFGQEV--- 289
S V +++ + + + + + S I + ++ ++ + L +
Sbjct: 191 NCN--SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI---HSIQAELRRLLKSKPYEN 245
Query: 290 --LV-DD-NDKDVIAS-----PTNLTAKVQTIFESFTKMSETNININKKQFMSNMDKVFE 340
LV + + + LT + + + + + + T+I + +
Sbjct: 246 CLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI------SLDHHSMTLT 299
Query: 341 TIKTKFEPFAEGEIPIESRSSYWNNNSDGTSKEACEMGKLGSSTPI---KKHSVITSNN- 396
+ K Y + +E S I + + T +N
Sbjct: 300 PDEVK-SLLL----------KYLDCRPQDLPREVLTTNPRRLSI-IAESIRDGLATWDNW 347
Query: 397 ---NSLNLENILDNIVFKVLN-----KYGEPVMLF-----LTRRLLIMYNVNTENY---- 439
N L I+++ + VL K + + +F + LL + +
Sbjct: 348 KHVNCDKLTTIIESSL-NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Query: 440 -------KSLVLKDMDNIVVGEHTVSFDCKG-AANMTVISSIDIDAVSTLISNVEIMCLK 491
SLV K + ++ + K N + +D + +
Sbjct: 407 VVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYN----------IP 456
Query: 492 QHYTPSSVSAKQ----------RHTLMRLLEHISSQTQYFNKCDEIILYSWSWIEQFSDI 541
+ + + H ++ +EH + F + + ++EQ I
Sbjct: 457 KTFDSDDLIPPYLDQYFYSHIGHH--LKNIEH-PERMTLFRM----VFLDFRFLEQ--KI 507
Query: 542 SRTGHDQVFRSGNL-------MYK--INDKSAWTPGFVN-LQNGILTVKEAPNSPKNISV 591
L YK I D VN + + + ++E K +
Sbjct: 508 RHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDL 567
Query: 592 IQC---HSFSQVYDKS 604
++ +++++
Sbjct: 568 LRIALMAEDEAIFEEA 583
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 65.6 bits (159), Expect = 4e-11
Identities = 22/199 (11%), Positives = 53/199 (26%), Gaps = 18/199 (9%)
Query: 10 DYNDWERAGNPGWGFKH--ILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRLSPDETVK 67
D + K+E + F + + V +L+ +
Sbjct: 176 DREQRPLLVKDDADADDAEWDRLYTKAESYFQTG--TDQFKESIRHNLVLNKLTEEY--- 230
Query: 68 IIEAAGKELKIGTMYDINRDQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNT 127
++ + + R T + + E +
Sbjct: 231 ---KGQRDFQQIPL-AATRRSPTFVEWSSANTVFD-----LQNRPNTDAPEERFNLFPAV 281
Query: 128 EVIKILIDSKL-KAYGVEYINSQGKICHVNSTREVILSAGAVGSPQLLMLSGIGIQKHLK 186
+++ ++ + + + +L+AGAV + QLL+ SG G
Sbjct: 282 ACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQLGRPN 341
Query: 187 EKNITVIKDLPVGENLQDH 205
N + +G + +
Sbjct: 342 PANPPELLPS-LGSYITEQ 359
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 64.3 bits (156), Expect = 7e-11
Identities = 33/232 (14%), Positives = 66/232 (28%), Gaps = 30/232 (12%)
Query: 1 MLYQRGNDRDYNDWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRL 60
+ + + + YF ++ ++ D + + +
Sbjct: 116 GMAVEPKRSYFEEI---LPRVDSSEMYDRYFPRANSMLRVNHIDTKWFEDTEWYKFARVS 172
Query: 61 SPDETVKIIEAAG-KELKIGTMYDIN--------RDQYIGFGPFDTTTRYGLRCSTSKAF 111
+ AG + + +YD + S K +
Sbjct: 173 -----REQAGKAGLGTVFVPNVYDFGYMQREAAGEVPKSALATEVIYGNNHGKQSLDKTY 227
Query: 112 LEPAKFRENLIILKNTEVIKILIDSKLK-AYGVEYINSQGKIC--HVNSTREVILSAGAV 168
L A + I +V I A VE ++ GK+ S R + L AG++
Sbjct: 228 LAAALGTGKVTIQTLHQVKTIRQTKDGGYALTVEQKDTDGKLLATKEISCRYLFLGAGSL 287
Query: 169 GSPQLLMLSGI-GIQKHLKEKNITVIKDLPVGENLQDHVCFPGVLFSSNKDP 219
GS +LL+ + G +L + VG + + +P
Sbjct: 288 GSTELLVRARDTGTLPNL---------NSEVGAGWGPNGNIMTARANHMWNP 330
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 54.8 bits (131), Expect = 6e-08
Identities = 29/187 (15%), Positives = 60/187 (32%), Gaps = 22/187 (11%)
Query: 5 RGNDRDYNDWERAGNPGWGFKHIL-PYFLKSEDFQDISRQDAAFHNTGGYLTVSPRLSPD 63
+ + P + YF ++ ++ D A+ + + +
Sbjct: 125 TPKRNYFEEIL----PSVDSNEMYNKYFPRANTGLGVNNIDQAWFESTEWYKFARTG--- 177
Query: 64 ETVKIIEAAGKELK---IGTMYDINRDQYIG------FGPFDTTTRYGLRCSTSKAFLEP 114
K + +G ++ + + G G + S K +L
Sbjct: 178 --RKTAQRSGFTTAFVPNVYDFEYMKKEAAGQVTKSGLGGEVIYGNNAGKKSLDKTYLAQ 235
Query: 115 AKFRENLIILKNTEVIKILIDS-KLKAYGVEYINSQGKIC--HVNSTREVILSAGAVGSP 171
A L I V K+ + + +E I+ QG + V + V +AG+VG+
Sbjct: 236 AAATGKLTITTLHRVTKVAPATGSGYSVTMEQIDEQGNVVATKVVTADRVFFAAGSVGTS 295
Query: 172 QLLMLSG 178
+LL+
Sbjct: 296 KLLVSMK 302
>3cxb_B Pleckstrin homology domain-containing family M member 2; SIFA,
SKIP, complex, virulence, cytoplasm, membrane,
polymorphism, signaling protein; 2.60A {Homo sapiens}
PDB: 3hw2_B
Length = 112
Score = 49.4 bits (118), Expect = 2e-07
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 9/99 (9%)
Query: 551 RSGNLMYK----INDKSAWTPGFVNLQNGILTVKEAPNSPKNISVI-----QCHSFSQVY 601
+ G L YK K W FV L NGIL + + QC +
Sbjct: 2 KEGMLHYKAGTSYLGKEHWKTCFVVLSNGILYQYPDRTDVIPLLSVNMGGEQCGGCRRAN 61
Query: 602 DKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIMISI 640
RP+ F+V + + +A E+++ +W+Q + ++
Sbjct: 62 TTDRPHAFQVILSDRPCLELSAESEAEMAEWMQHLCQAV 100
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.5 bits (128), Expect = 2e-07
Identities = 102/674 (15%), Positives = 206/674 (30%), Gaps = 260/674 (38%)
Query: 157 STREVILSAGAVGSPQLLMLSGIGIQKHLKEKNITVIKDL-PVGENLQDHVCFPGVL--- 212
STR + LS G++ E + V + LQ+ F +L
Sbjct: 5 STRPLTLSHGSL------------------EHVLLVPTASFFIASQLQE--QFNKILPEP 44
Query: 213 ---FSSNKDPAITLHYLRYLKVAALKGISTVE-VAKVVGFINTK--RNSLYPNVELLSIR 266
F+++ +P + E V K +G++++ + + ++L
Sbjct: 45 TEGFAADDEPT-----------------TPAELVGKFLGYVSSLVEPSKVGQFDQVL--- 84
Query: 267 IPMNSKERNNGKSVMGSLFGQEVLVDDNDKDVIASPTNLTAKVQTIFESFTKMSETNINI 326
+ F L + ND + + + ++T +
Sbjct: 85 -----------NLCLTE-FENCYL-EGND-------------IHALAAKLLQENDTTL-- 116
Query: 327 NKKQFMSNMDKVFETIKTKFEPFAEGEIPIE--SRSSYWNNNSDGTSKEACEMGKLGSST 384
K E IK + P + S S+ + +G ++ G G
Sbjct: 117 ---------VKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG--- 164
Query: 385 PIKKHSVITSNNNSLNLENILDNIVFKVLNKYGEPVMLFLTRRLLIMYNVNTENYKSLV- 443
N ++ + E L +Y Y LV
Sbjct: 165 ---------------NTDDYFE-----------E---------LRDLYQT----YHVLVG 185
Query: 444 --LKDMDNIVVGEHTVSFDCKGAANMTVISSIDIDA--------------VSTLISNVEI 487
+K + + D + ++I +S IS +
Sbjct: 186 DLIKFSAETLSELIRTTLDAEKVFT----QGLNILEWLENPSNTPDKDYLLSIPIS-CPL 240
Query: 488 MCLKQ--HYTPSSVSAKQ---RHTLMRLLEHISSQTQYFNKCDEIIL------YSWSWIE 536
+ + Q HY V+AK +R ++ T + ++ + SW E
Sbjct: 241 IGVIQLAHYV---VTAKLLGFTPGELR--SYLKGAT----GHSQGLVTAVAIAETDSW-E 290
Query: 537 QFSDISRT-----------GHDQVFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNS 585
F R + + + + +L I + S L+N E S
Sbjct: 291 SFFVSVRKAITVLFFIGVRCY-EAYPNTSLPPSILEDS--------LENN-----EGVPS 336
Query: 586 P----KNISVIQCHSFSQVYDKSRPYTFKVN---FN-PYSFVLFAAPDESQLFDWLQDIM 637
P N++ Q + + P +V N + V+ + P +S L +
Sbjct: 337 PMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVV-SGPPQS-----LYGLN 390
Query: 638 ISIKINDDKKILVGKFAAP---DESQLFDWLQDIMISIKINDDKVISFMR----SAPFSA 690
++++ K AP D+S+ I ++ K+ R ++PF +
Sbjct: 391 LTLR----------KAKAPSGLDQSR-----------IPFSERKLKFSNRFLPVASPFHS 429
Query: 691 IIMVGA--LVCPDTIVGIIEASMTLNPE---IP----FT---LKVGSTTLVGSSLGPILQ 738
++V A L+ D +++ +++ N + IP F L+V S ++ + I++
Sbjct: 430 HLLVPASDLINKD----LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIR 485
Query: 739 VPA---GCQNVPAT 749
+P AT
Sbjct: 486 LPVKWETTTQFKAT 499
Score = 50.4 bits (120), Expect = 2e-06
Identities = 58/363 (15%), Positives = 102/363 (28%), Gaps = 127/363 (34%)
Query: 1 M---LYQRGND-RDYNDWERAGNPGWGFKHILPYFLKSEDF--QDISRQD---AAFHNTG 51
M LY+ +D W RA N +F + F DI + H G
Sbjct: 1631 MGMDLYKTSKAAQDV--WNRADN----------HFKDTYGFSILDIVINNPVNLTIHFGG 1678
Query: 52 GYLTVSPRLSPDETVKIIEAAGKELKIGTM---YDINRDQYIGFGP-FDTTTRYGLRCST 107
GK ++ ++ D + F + ST
Sbjct: 1679 -------------------EKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH----ST 1715
Query: 108 SKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAGA 167
S F L T+ +Q
Sbjct: 1716 SYTFRSEKGL------LSATQ------------------FTQ------------------ 1733
Query: 168 VGSPQLLMLSGIGIQKHLKEKNITVIKDL----PVGEN--LQDHVCFPGVL-FSSNKDPA 220
P L ++ + LK K + +GE L V+ S
Sbjct: 1734 ---PALTLME-KAAFEDLKSKGLIPADATFAGHSLGEYAAL---ASLADVMSIES----L 1782
Query: 221 ITLHYLR--YLKVAALKGISTVEVAKVVGFINTKRNSLYPNVELLSIRIPMNSKERNNGK 278
+ + + R ++VA + ++ IN R + + E L + K G
Sbjct: 1783 VEVVFYRGMTMQVAVPRDELGRSNYGMIA-INPGRVAASFSQEALQYVVERVGKR--TGW 1839
Query: 279 SVMGSLFGQEVLVDDNDKD---VIASPTNLTAKVQTIFESFTKMSETNININKKQFMSNM 335
V E+ V+ N ++ V A +L A + T+ + I+I + Q ++
Sbjct: 1840 LV-------EI-VNYNVENQQYVAAG--DLRA-LDTVTNVLNFIKLQKIDIIELQKSLSL 1888
Query: 336 DKV 338
++V
Sbjct: 1889 EEV 1891
Score = 49.3 bits (117), Expect = 5e-06
Identities = 34/188 (18%), Positives = 71/188 (37%), Gaps = 52/188 (27%)
Query: 32 LKSEDFQDISRQDAAF--HNTGGY--LT-VSPRLSPDETVKIIEAAGKELKIGTMYDINR 86
LKS+ DA F H+ G Y L ++ +S + V+++ G + + R
Sbjct: 1747 LKSKGLIP---ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTM----QVAVPR 1799
Query: 87 DQYIGFGPFDTTTRYGLRCSTSKAFLEPAKFRENLIILKNTEVIKILIDSKLKAYG--VE 144
D+ + YG+ + P + + + E ++ +++ K G VE
Sbjct: 1800 DE-------LGRSNYGM------IAINPGRVAASF----SQEALQYVVERVGKRTGWLVE 1842
Query: 145 YINSQGKICHVNSTREVILSAG---AVGSPQLLMLSGIGIQKHLKEKNITVIKDLPVG-- 199
+N N + ++AG A+ + + +K + I +I+ L
Sbjct: 1843 IVN-------YNVENQQYVAAGDLRAL---DTV----TNVLNFIKLQKIDIIE-LQKSLS 1887
Query: 200 -ENLQDHV 206
E ++ H+
Sbjct: 1888 LEEVEGHL 1895
Score = 43.5 bits (102), Expect = 3e-04
Identities = 53/283 (18%), Positives = 101/283 (35%), Gaps = 90/283 (31%)
Query: 275 NNGKSVMGSLFGQEVL--VDDNDKDVIASPTNLT-----AKVQTIFESFTKMS-ETNINI 326
N + +G +L V +N P NLT K + I E+++ M ET ++
Sbjct: 1647 NRADNHFKDTYGFSILDIVINN-------PVNLTIHFGGEKGKRIRENYSAMIFETIVDG 1699
Query: 327 NKKQFMSNMDKVFETIKTKFEPFAEGEIPIESRSSYWNNNSDG--------------TSK 372
K +K+F+ I E +SY + G K
Sbjct: 1700 KLK-----TEKIFKEIN-------------EHSTSYTFRSEKGLLSATQFTQPALTLMEK 1741
Query: 373 EACE-MGKLGSSTPIKK----HSV-----ITSNNNSLNLENILDNIVFK------VLNKY 416
A E + G P HS+ + S + +++E++++ +VF V
Sbjct: 1742 AAFEDLKSKGL-IPADATFAGHSLGEYAALASLADVMSIESLVE-VVFYRGMTMQVAVPR 1799
Query: 417 GEPVMLFLTRRLLIMYNVN-TENYKSLVLKDMDNIV--VGEHT------VSFDCKGAANM 467
E L R M +N S + + +V VG+ T V+++ N
Sbjct: 1800 DE-----LGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTGWLVEIVNYNV---ENQ 1851
Query: 468 TVISSIDIDAVSTL--------ISNVEIMCLKQHYTPSSVSAK 502
+++ D+ A+ T+ + ++I+ L++ + V
Sbjct: 1852 QYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
Score = 31.9 bits (72), Expect = 1.0
Identities = 19/81 (23%), Positives = 25/81 (30%), Gaps = 27/81 (33%)
Query: 13 DWERAGNPGWGFKHILPYFLKSEDFQDISRQDAAFHNTGGYLTVSPRLSPDETVKIIEAA 72
WE HIL DF GG + T + +
Sbjct: 489 KWETTTQFK--ATHIL-------DF-----------GPGGASGLGVL-----THRNKDGT 523
Query: 73 G-KELKIGTMYDINRDQYIGF 92
G + + GT+ DIN D GF
Sbjct: 524 GVRVIVAGTL-DINPDDDYGF 543
>1dro_A Beta-spectrin; cytoskeleton; NMR {Drosophila melanogaster} SCOP:
b.55.1.1
Length = 122
Score = 43.4 bits (102), Expect = 2e-05
Identities = 13/109 (11%), Positives = 33/109 (30%), Gaps = 19/109 (17%)
Query: 547 DQVFRSGNLMYK----INDKSA----WTPGFVNLQNGILTV----KEAPNSPKN------ 588
G + K K A W ++ + G ++ K ++P+
Sbjct: 6 AGEGHEGYVTRKHEWDSTTKKASNRSWDKVYMAAKAGRISFYKDQKGYKSNPELTFRGEP 65
Query: 589 -ISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDI 636
+ + + +V + L A D++++ W+ +
Sbjct: 66 SYDLQNAAIEIASDYTKKKHVLRVKLANGALFLLQAHDDTEMSQWVTSL 114
>1wjm_A Beta-spectrin III; PH domain, signal transduction, structural
genomics, spectrin beta chain, brain 2, KIAA0302; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 123
Score = 43.4 bits (102), Expect = 3e-05
Identities = 19/110 (17%), Positives = 36/110 (32%), Gaps = 17/110 (15%)
Query: 544 TGHDQVFRSGNLMYKIN--------DKSAWTPGFVNLQNGIL---------TVKEAPNSP 586
+G G L K +W + L+ G L + +
Sbjct: 3 SGSSGEQMEGMLCRKQEMEAFGKKAANRSWQNVYCVLRRGSLGFYKDAKAASAGVPYHGE 62
Query: 587 KNISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDI 636
+S+ + + R + FK+ LF A DE+++ WL+ +
Sbjct: 63 VPVSLARAQGSVAFDYRKRKHVFKLGLQDGKEYLFQAKDEAEMSSWLRVV 112
>2j59_M RHO-GTPase activating protein 10; ARF, ARF1, ARFBD, arhgap21,
myristate, transport, nucleotide-binding, rhogap
protein, hydrolase; HET: GTP; 2.1A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2dhj_A
Length = 168
Score = 42.1 bits (98), Expect = 1e-04
Identities = 21/117 (17%), Positives = 39/117 (33%), Gaps = 18/117 (15%)
Query: 548 QVFRSGNLMYKI----------NDKSAWTPGFVNLQNGILTV------KEAPNSPKN-IS 590
+ G L ++ W +V L+ L + + P+ + IS
Sbjct: 2 DAAKEGWLHFRPLVTDKGKRVGGSIRPWKQMYVVLRGHSLYLYKDKREQTTPSEEEQPIS 61
Query: 591 VIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIMISIKINDDKK 647
V C + R F++ LF A D + W++ I S +N++
Sbjct: 62 VNACLIDISYSETKRKNVFRL-TTSDCECLFQAEDRDDMLAWIKTIQESSNLNEEDT 117
>1wgq_A FYVE, rhogef and PH domain containing 6; ethanol decreased 4;
pleckstrin homoloy domain, signal transduction,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 109
Score = 40.8 bits (96), Expect = 2e-04
Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 3/100 (3%)
Query: 544 TGHDQVFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQ---CHSFSQV 600
+G SG L K W + ++N +L A +
Sbjct: 3 SGSSGSTMSGYLYRSKGSKKPWKHLWFVIKNKVLYTYAASEDVAALESQPLLGFTVTLVK 62
Query: 601 YDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIMISI 640
+ S F++ F +F A D W+
Sbjct: 63 DENSESKVFQLLHKGMVFYVFKADDAHSTQRWIDAFQEGT 102
>1btn_A Beta-spectrin; signal transduction protein; HET: I3P; 2.00A {Mus
musculus} SCOP: b.55.1.1 PDB: 1mph_A
Length = 106
Score = 38.4 bits (89), Expect = 9e-04
Identities = 14/84 (16%), Positives = 33/84 (39%), Gaps = 9/84 (10%)
Query: 562 KSAWTPGFVNLQNGILTVKEAPNSPKN---------ISVIQCHSFSQVYDKSRPYTFKVN 612
+W + + N + + S + +S+ + + K + + FK+
Sbjct: 20 SRSWHNVYCVINNQEMGFYKDAKSAASGIPYHSEVPVSLKEAICEVALDYKKKKHVFKLR 79
Query: 613 FNPYSFVLFAAPDESQLFDWLQDI 636
+ + LF A D+ ++ W+Q I
Sbjct: 80 LSDGNEYLFQAKDDEEMNTWIQAI 103
>2cof_A Protein KIAA1914; PH domain, structural genomics, riken structural
genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo
sapiens} SCOP: b.55.1.1
Length = 107
Score = 37.9 bits (88), Expect = 0.001
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 7/97 (7%)
Query: 542 SRTGHDQVFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKN----ISVIQCHSF 597
+G + S L +N S W + ++++ L + N K +S++ C
Sbjct: 1 GSSGSSGLETSSYLNVLVN--SQWKSRWCSVRDNHLHFYQDRNRSKVAQQPLSLVGC-EV 57
Query: 598 SQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQ 634
Y+F++ A ++ WL
Sbjct: 58 VPDPSPDHLYSFRILHKGEELAKLEAKSSEEMGHWLG 94
>3pp2_A RHO GTPase-activating protein 27; PH domain, GTPase activator,
pleckstrin homology domain, STR genomics consortium,
SGC, hydrolase activator; HET: CIT; 1.42A {Homo sapiens}
Length = 124
Score = 37.9 bits (88), Expect = 0.002
Identities = 16/119 (13%), Positives = 32/119 (26%), Gaps = 25/119 (21%)
Query: 547 DQVFRSGNLMYK-IND------KSAWTPGFVNLQNGIL-----------------TVKEA 582
+ ++G L D K W+ + L+ G+L +
Sbjct: 6 KTLDKAGVLHRTKTADKGKRLRKKHWSASWTVLEGGVLTFFKDSKTSAAGGLRQPSKFST 65
Query: 583 PNSPKNISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIMISIK 641
P + + R ++ S L E+ + W + I I+
Sbjct: 66 PEYTVELRGATLSWAPKDKSS-RKNVLELRSRDGSEYLIQHDSEAIISTWHKAIAQGIQ 123
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 34.9 bits (80), Expect = 0.020
Identities = 9/88 (10%), Positives = 24/88 (27%), Gaps = 9/88 (10%)
Query: 550 FRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYDKSRPYTF 609
+ G+L+Y + V++ + ++ +C KS+
Sbjct: 29 WSDGHLIYYDDQTRQNIEDKVHMPMDCINIRTGQ---------ECRDTQPPDGKSKDCML 79
Query: 610 KVNFNPYSFVLFAAPDESQLFDWLQDIM 637
++ + A W +
Sbjct: 80 QIVCRDGKTISLCAESTDDCLAWKFTLQ 107
>2r09_A Cytohesin-3; autoinhibition, GRP1, PIP3, ARF, 3-phosphoinositide,
pleckst homology domain, guanine-nucleotide releasing
factor, signa protein; HET: 4IP PGE PE5; 1.90A {Mus
musculus} SCOP: a.118.3.1 b.55.1.1 PDB: 2r0d_A*
Length = 347
Score = 36.5 bits (84), Expect = 0.029
Identities = 27/155 (17%), Positives = 52/155 (33%), Gaps = 23/155 (14%)
Query: 525 DEIILYSWSWIEQFSDISRTGHDQVFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPN 584
+ I + E + R G L+ W + L + L E
Sbjct: 189 ESIKNEPFKIPEDDGNDLTYTFFNPDREGWLLKLGGRVKTWKRRWFILTDNCLYYFEYTT 248
Query: 585 S--PKNISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIMISIKI 642
P+ I ++ S +V D +P F+ L+ + Q+ + + K
Sbjct: 249 DKEPRGIIPLENLSIREVEDPRKPNCFE---------LYNPSHKGQV-------IKACKT 292
Query: 643 NDDKKILVGK-----FAAPDESQLFDWLQDIMISI 672
D +++ G +AP + +W++ I SI
Sbjct: 293 EADGRVVEGNHVVYRISAPSPEEKEEWMKSIKASI 327
>2p0d_A RHO GTPase-activating protein 9; protein-phosphoinositide complex,
pleckstrin homology domain, ligand binding protein; HET:
I3P; 1.81A {Homo sapiens} PDB: 2p0f_A 2p0h_A*
Length = 129
Score = 34.5 bits (79), Expect = 0.033
Identities = 21/117 (17%), Positives = 37/117 (31%), Gaps = 20/117 (17%)
Query: 545 GHDQVFRSGNLMYK-IND-----KSAWTPGFVNLQNGIL-----------TVKEAPNSPK 587
G +V +SG L I + W P +V L L + P +
Sbjct: 8 GSHEVEKSGLLNMTKIAQGGRKLRKNWGPSWVVLTGNSLVFYREPPPTAPSSGWGPAGSR 67
Query: 588 NISVIQCH--SFSQVYDKS-RPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIMISIK 641
S + + + S R + P L + E++L W + + I+
Sbjct: 68 PESSVDLRGAALAHGRHLSSRRNVLHIRTIPGHEFLLQSDHETELRAWHRALRTVIE 124
>2da0_A 130-kDa phosphatidylinositol 4,5-biphosphate- dependent ARF1
GTPase-activating protein...; PH domain, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 114
Score = 34.0 bits (78), Expect = 0.035
Identities = 19/94 (20%), Positives = 41/94 (43%), Gaps = 7/94 (7%)
Query: 551 RSGNLMYK-INDKSAWTPGFVNLQNGILTVKEAPNS--PKNISVIQCHSFSQVYDKSRPY 607
+ G L+ K + W +++NGILT+ A ++ P ++++ C +
Sbjct: 12 KKGYLLKKSDGIRKVWQRRKCSVKNGILTISHATSNRQPAKLNLLTC---QVKPNAEDKK 68
Query: 608 TFKVNFNPYSFVLFAAPDESQLFDWLQDIMISIK 641
+F + + ++ F A DE W+ + S +
Sbjct: 69 SFDLISHNRTYH-FQAEDEQDYVAWISVLTNSKE 101
>1u5e_A SRC-associated adaptor protein; novel dimerization domain, PH
domain, signaling protein; 2.60A {Mus musculus} SCOP:
b.55.1.1 PDB: 2otx_A
Length = 211
Score = 34.7 bits (79), Expect = 0.058
Identities = 20/139 (14%), Positives = 41/139 (29%), Gaps = 16/139 (11%)
Query: 514 ISSQTQYFNKCDEIILYSWSWIEQFSDISRTGHDQVFRSGNLMYKINDKS-----AWTPG 568
IS ++ ++K D+ S QF I+ V ++G L K W
Sbjct: 75 ISLASERYDKDDDGP----SDGNQFPPIAAQDLPFVIKAGYL-EKRRKDHSFLGFEWQKR 129
Query: 569 FVNLQNGILTVKEAPNSPKNISVIQCHSFSQVY------DKSRPYTFKVNFNPYSFVLFA 622
+ L + + + + D + F++ F
Sbjct: 130 WCALSKTVFYYYGSDKDKQQKGEFAIDGYDVRMNNTLRKDGKKDCCFEICAPDKRIYQFT 189
Query: 623 APDESQLFDWLQDIMISIK 641
A +W+Q + ++
Sbjct: 190 AASPKDAEEWVQQLKFILQ 208
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 35.0 bits (81), Expect = 0.086
Identities = 7/44 (15%), Positives = 17/44 (38%), Gaps = 1/44 (2%)
Query: 123 ILKNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTREVILSAG 166
N+ V+K++++ G + + V+L+ G
Sbjct: 267 TRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIG-AKSVVLATG 309
>1fao_A Dual adaptor of phosphotyrosine and 3- phosphoinositides;
pleckstrin, inositol tetrakisphosphate signal
transduction protein, adaptor protein; HET: 4IP; 1.80A
{Homo sapiens} SCOP: b.55.1.1 PDB: 1fb8_A
Length = 126
Score = 32.8 bits (75), Expect = 0.13
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 569 FVNLQNGILTVKEAPNSPKNISVI---QCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPD 625
F L L + SP+ I ++ +C + Y + R F + F +F A
Sbjct: 39 FT-LHRNELKYFKDQMSPEPIRILDLTECSAVQFDYSQERVNCFCLVFPFRTF-YLCAKT 96
Query: 626 ESQLFDWLQDIMISI 640
+ +W++ + +
Sbjct: 97 GVEADEWIKILRWKL 111
>2yry_A Pleckstrin homology domain-containing family A member 6; PH domain,
PEPP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 122
Score = 32.4 bits (74), Expect = 0.14
Identities = 20/118 (16%), Positives = 41/118 (34%), Gaps = 16/118 (13%)
Query: 536 EQFSDISRTGHDQVFRSGNLMYKINDKSA------WTPGFVNLQNGILTVKEAPNSPKNI 589
++ + R + V ++G L +K W FV L + L + +
Sbjct: 9 KRSHSMKRNPNAPVTKAGWL-FKQASSGVKQWNKRW---FV-LVDRCLFYYKDEKEESIL 63
Query: 590 SVI-----QCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIMISIKI 642
I + + + SR +TFK F+A + W+Q + + ++
Sbjct: 64 GSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSAESPEEQEAWIQAMGEAARV 121
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.16
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 27/56 (48%)
Query: 187 EKNITVIKDLPVGEN-LQDHVCFPGVLFSSNKDPAITLHYLRYLKVAALKGISTVE 241
EK +K L + L+ L++ + PA+ A+K +T+E
Sbjct: 18 EKQ--ALKKL---QASLK--------LYADDSAPAL-----------AIK--ATME 47
Score = 29.1 bits (64), Expect = 3.4
Identities = 9/36 (25%), Positives = 15/36 (41%), Gaps = 7/36 (19%)
Query: 125 KNTEVIKILIDSKLKAYGVEYINSQGKICHVNSTRE 160
K +K L + LK Y + S + + +T E
Sbjct: 19 KQA--LKKL-QASLKLYADD---SAPALA-IKATME 47
>3a8n_A TIAM-1, T-lymphoma invasion and metastasis-inducing protein 1;
guanine nucleotide exchange factor, guanine-nucleotide
releasing factor, lipoprotein; 4.50A {Mus musculus}
Length = 279
Score = 33.4 bits (75), Expect = 0.23
Identities = 16/111 (14%), Positives = 36/111 (32%), Gaps = 21/111 (18%)
Query: 547 DQVFRSGNLMYK------------INDKSAWTPGFVNLQNGILTV-KEAPNSPKN----- 588
V ++G L K + W +V+L+ L + S +
Sbjct: 9 GTVRKAGALAVKNFLVHKKNKKVESATRRKWKHYWVSLKGCTLFFYETDGRSGIDHNSVP 68
Query: 589 ---ISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDI 636
+ V + + + F ++ + LF +++L +W+ I
Sbjct: 69 KHAVWVENSIVQAVPEHPKKDFVFCLSNSLGDAFLFQTTSQTELENWITAI 119
>2d9v_A Pleckstrin homology domain-containing protein family B member 1; PH
domain, phret1, structural genomics, NPPSFA; NMR {Mus
musculus}
Length = 130
Score = 31.9 bits (72), Expect = 0.26
Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 9/86 (10%)
Query: 551 RSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYDKSRPYTFK 610
G L Y ++ + V + + +K +C +SR
Sbjct: 33 LDGTLGYYHDETAQDEEDRVVIHFNVRDIKVGQ---------ECQDVQPPEGRSRDGLLT 83
Query: 611 VNFNPYSFVLFAAPDESQLFDWLQDI 636
VN S + A W +
Sbjct: 84 VNLREGSRLHLCAETRDDAIAWKTAL 109
>1v5m_A SH2 and PH domain-containing adapter protein APS; adaptor protein,
pleckstrin homology domain, cellular signaling,
structural genomics; NMR {Mus musculus} SCOP: b.55.1.1
Length = 136
Score = 31.4 bits (70), Expect = 0.43
Identities = 18/118 (15%), Positives = 36/118 (30%), Gaps = 20/118 (16%)
Query: 539 SDISRTGHDQVFRSGNLMYKINDKSA--------WTPGFVNLQNG------ILTVKEAPN 584
+ ++ + R G L + + D +A W + L+ L P
Sbjct: 8 NLAAKVELVDIQREGALRFMVADDAASGPGGTAQWQKCRLLLRRAVAGERFRLEFFVPPK 67
Query: 585 SPKNISVIQCHSFSQVYD------KSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDI 636
+ + I + +V + TF + + + D Q W+ DI
Sbjct: 68 ASRPKVSIPLSAIIEVRTTMPLEMPEKDNTFVLKVENGAEYILETIDSLQKHSWVADI 125
>3tfm_A Myosin X; split PH domain, motor protein; 2.53A {Rattus norvegicus}
Length = 228
Score = 31.9 bits (72), Expect = 0.62
Identities = 17/127 (13%), Positives = 37/127 (29%), Gaps = 17/127 (13%)
Query: 532 WSWIEQFSDISRTGHDQVFRSGNLMYKINDKSA----------WTPGFVNLQNGILTVKE 581
W ++ + + + + G L + S+ W FV L+ L E
Sbjct: 41 WCVLKDETFLWFRSKQEALKQGWL-HNNGGGSSTLSRRNWKKRW---FV-LRQSKLMYFE 95
Query: 582 APNSPKNISVIQCHSFSQVYDKS-RPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIMISI 640
+ K ++ S ++ D + + + +F A W +
Sbjct: 96 NDSEEKLKGTVEVRSAKEIIDNTNKENGIDIIMADRTFH-LIAESPEDASQWFSVLSQVH 154
Query: 641 KINDDKK 647
D +
Sbjct: 155 SSTDQEI 161
>1v88_A Oxysterol binding protein-related protein 8; vesicle transport,
pleckstrin homology domain, phosphatidylinositol
binding, structural genomics; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 130
Score = 30.8 bits (69), Expect = 0.71
Identities = 19/100 (19%), Positives = 32/100 (32%), Gaps = 7/100 (7%)
Query: 549 VFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYD-----K 603
V + G L+ K+ G V L + E P+ H Q K
Sbjct: 29 VLKPGVLLIYKTQKNGQWVGTVLLNA--CEIIERPSKKDGFCFKLFHPLEQSIWAVKGPK 86
Query: 604 SRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIMISIKIN 643
P S+++ A ES W+ + +++K
Sbjct: 87 GEAVGSITQPLPSSYLIIRATSESDGRCWMDALELALKSG 126
Score = 28.5 bits (63), Expect = 3.9
Identities = 22/135 (16%), Positives = 43/135 (31%), Gaps = 14/135 (10%)
Query: 544 TGHDQVFRSGNLMYKINDKSAWTPGFVNLQNGILT--VKEAPNSPKNISVIQCHSFSQVY 601
+G + + L + KS WT + L+ G+L + ++ +
Sbjct: 3 SGSSGIVMADWLKIRGTLKS-WTKLWCVLKPGVLLIYKTQKNGQWVGTVLLNACEIIERP 61
Query: 602 DKSRPYTFKV-NFNPYSFVLFAAPDESQLFDWLQDIMISIKINDDKKILVGKFAAPDESQ 660
K + FK+ + S P + Q + S I A ES
Sbjct: 62 SKKDGFCFKLFHPLEQSIWAVKGPKGEAVGSITQPLPSSYLI----------IRATSESD 111
Query: 661 LFDWLQDIMISIKIN 675
W+ + +++K
Sbjct: 112 GRCWMDALELALKSG 126
>1pls_A Pleckstrin homology domain; phosphorylation; NMR {Homo sapiens}
SCOP: b.55.1.1
Length = 113
Score = 30.0 bits (68), Expect = 0.79
Identities = 15/93 (16%), Positives = 25/93 (26%), Gaps = 18/93 (19%)
Query: 549 VFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYDKSRPYT 608
V + + G + L G + K R +
Sbjct: 27 VLLEDGIEFYKKKSDNSPKGMIPL-KGSTLTSPCQDFGK-----------------RMFV 68
Query: 609 FKVNFNPYSFVLFAAPDESQLFDWLQDIMISIK 641
FK+ F A + W++DI +IK
Sbjct: 69 FKITTTKQQDHFFQAAFLEERDAWVRDINKAIK 101
>3a8p_A T-lymphoma invasion and metastasis-inducing protein 2; guanine
nucleotide exchange factor, alternative splicing, cell
projection, coiled coil; 2.10A {Mus musculus} PDB:
3a8q_A
Length = 263
Score = 31.5 bits (70), Expect = 0.83
Identities = 16/117 (13%), Positives = 36/117 (30%), Gaps = 21/117 (17%)
Query: 541 ISRTGHDQVFRSGNLMYKIN------------DKSAWTPGFVNLQNGIL---------TV 579
+ V ++G L +K + W +V L+ L +
Sbjct: 3 LGSKEQGVVRKAGWLFFKPLVTLQKERKLELVARRKWKQYWVTLKGCTLLFYETYGKNST 62
Query: 580 KEAPNSPKNISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDI 636
++ + S + + F ++ + LF A ++ L +W+ I
Sbjct: 63 EQNSAPRCALFAEDSIVQSVPEHPKKEHVFCLSNSCGDVYLFQATSQTDLENWVTAI 119
>2lul_A Tyrosine-protein kinase TEC; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative, transferase; NMR {Homo sapiens}
Length = 164
Score = 30.5 bits (68), Expect = 1.0
Identities = 17/100 (17%), Positives = 30/100 (30%), Gaps = 15/100 (15%)
Query: 549 VFRSGNLMYKINDKSAWTP-GFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYDKSRPY 607
V L Y GF+++ V + V Y
Sbjct: 42 VLTKSMLTYYEGRAEKKYRKGFIDVSK-------------IKCVEIVKNDDGVIPCQNKY 88
Query: 608 TFKVNFNPYSFVLFAAPDESQLFDWLQDIMISIKINDDKK 647
F+V + + +F AP W++ + IK N++
Sbjct: 89 PFQVVHDANTLYIF-APSPQSRDLWVKKLKEEIKNNNNIM 127
>1wg7_A Dedicator of cytokinesis protein 9; pleckstrin homology domain,
zizimin1, structural genomics, riken structural
genomics/proteomics initiative; NMR {Homo sapiens} SCOP:
b.55.1.1
Length = 150
Score = 30.3 bits (68), Expect = 1.1
Identities = 15/71 (21%), Positives = 31/71 (43%), Gaps = 2/71 (2%)
Query: 580 KEAPNSPKNISVIQCHSFSQVY--DKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIM 637
K+ S + I S V +K R + F++ S L AA E ++ +W+ +
Sbjct: 61 KDEKISKEPKGSIFLDSCMGVVQNNKVRRFAFELKMQDKSSYLLAADSEVEMEEWITILN 120
Query: 638 ISIKINDDKKI 648
+++N + +
Sbjct: 121 KILQLNFEAAM 131
>1v5p_A Pleckstrin homology domain-containing, family A; TAPP2, the
pleckstrin homology domain, structural genomics; NMR
{Mus musculus} SCOP: b.55.1.1
Length = 126
Score = 29.9 bits (67), Expect = 1.1
Identities = 13/91 (14%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 551 RSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYDKSRPYTFK 610
++ L++ +++ G + + LT + + + P+ F
Sbjct: 42 QANCLLWYMDNPQNLAVGAGAVGSLQLT-----------YISKVSIATPKQKPKTPFCFV 90
Query: 611 VNFNPYSFVLFAAPDESQLFDWLQDIMISIK 641
+N + A D+ L DW++ + + K
Sbjct: 91 INALSQRYF-LQANDQKDLKDWVEALNQASK 120
>2dn6_A KIAA0640 protein; PH domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 115
Score = 29.7 bits (67), Expect = 1.4
Identities = 15/94 (15%), Positives = 33/94 (35%), Gaps = 19/94 (20%)
Query: 549 VFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYDKSRPYT 608
V + + Y +++ G + L + V+ P+ +
Sbjct: 30 VLKPNIISYYVSEDLKDKKGDILL-DENCCVESLPDKDG-----------------KKCL 71
Query: 609 FKVNFNPYSFVLFAAPDESQLFDWLQDIMISIKI 642
F V +F +A D+ + +W+Q I +I +
Sbjct: 72 FLVKCFDKTF-EISASDKKKKQEWIQAIHSTIHL 104
>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine
biosy structural genomics, PSI, protein structure
initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis}
SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A*
3ddn_A*
Length = 529
Score = 30.7 bits (70), Expect = 1.9
Identities = 21/130 (16%), Positives = 48/130 (36%), Gaps = 26/130 (20%)
Query: 220 AITLHYLRYLKVAALKGISTVEVAKVVGFIN--------------TKRNSLYPNVELLSI 265
+ + L+++AL+G+ + + V F+N K + + ++ +
Sbjct: 356 ELAAEEVEVLRLSALRGLFSAVIEDAVTFVNAPALAAERGVTAEICKASESPNHRSVVDV 415
Query: 266 RIPMNSKERNNGKSVMGSLFGQE-----VLVDDNDKDVIASPTNL----TAKVQTIFESF 316
R +V G+L+G + V ++ D+ A NL + + +
Sbjct: 416 RAVGADGSV---VTVSGTLYGPQLSQKIVQINGRHFDLRAQGINLIIHYVDRPGALGKIG 472
Query: 317 TKMSETNINI 326
T + +NI
Sbjct: 473 TLLGTAGVNI 482
>2d9y_A Pleckstrin homology domain-containing protein family A member 6; PH
domain, PEPP-3, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 117
Score = 29.3 bits (66), Expect = 1.9
Identities = 13/79 (16%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 569 FVNLQNGILTVKEAPNSPK-----NISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAA 623
FV L + L + + + + + SR +TFK F+A
Sbjct: 33 FV-LVDRCLFYYKDEKEESILGSIPLLSFRVAAVQPSDNISRKHTFKAEHAGVRTYFFSA 91
Query: 624 PDESQLFDWLQDIMISIKI 642
+ W+Q + + ++
Sbjct: 92 ESPEEQEAWIQAMGEAARV 110
>1fgy_A GRP1; PH domain, signaling protein; HET: 4IP; 1.50A {Mus musculus}
SCOP: b.55.1.1 PDB: 1fgz_A 1u2b_A 1fhw_A* 1fhx_A*
1u29_A* 1u27_A*
Length = 127
Score = 29.2 bits (65), Expect = 2.1
Identities = 17/109 (15%), Positives = 38/109 (34%), Gaps = 14/109 (12%)
Query: 569 FVNLQNGILTVKEAPNSPKNISVI--QCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDE 626
F+ L + L E + +I + S +V D +P F++ + + A
Sbjct: 26 FI-LTDNCLYYFEYTTDKEPRGIIPLENLSIREVLDPRKPNCFELYNPSHKGQVIKACKT 84
Query: 627 SQLFDWLQDIMISIKINDDKKILVGKFAAPDESQLFDWLQDIMISIKIN 675
++ + + +AP + +W++ I SI +
Sbjct: 85 EADGRVVEGNHVVYR-----------ISAPSPEEKEEWMKSIKASISRD 122
Score = 28.4 bits (63), Expect = 3.4
Identities = 17/99 (17%), Positives = 33/99 (33%), Gaps = 7/99 (7%)
Query: 549 VFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKN----ISVIQCHSFSQVYDKS 604
+ L Y G + L+N L+++E + K + K+
Sbjct: 27 ILTDNCLYYFEYTTDKEPRGIIPLEN--LSIREVLDPRKPNCFELYNPSHKGQVIKACKT 84
Query: 605 RPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIMISIKIN 643
V N + +AP + +W++ I SI +
Sbjct: 85 EADGRVVEGNHVVYR-ISAPSPEEKEEWMKSIKASISRD 122
>1qqg_A IRS-1, insulin receptor substrate 1; beta-sandwhich, signal
transduction; 2.30A {Homo sapiens} SCOP: b.55.1.2
b.55.1.2 PDB: 1irs_A*
Length = 264
Score = 30.2 bits (67), Expect = 2.3
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 589 ISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIM 637
I + C + ++ D + + F AA E++ W Q ++
Sbjct: 61 IPLESCFNINKRADSKNKHLVALYTRDEHF-AIAADSEAEQDSWYQALL 108
>1upq_A PEPP1; PH domain, phosphoinositide binding, signal transduction;
1.48A {Homo sapiens} SCOP: b.55.1.1 PDB: 1upr_A*
Length = 123
Score = 28.2 bits (63), Expect = 3.8
Identities = 15/97 (15%), Positives = 29/97 (29%), Gaps = 17/97 (17%)
Query: 549 VFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYDKSRPYT 608
V L Y + + G V L + ++ + +F+ + R Y
Sbjct: 34 VLSGHCLFYYKDSREESVLGSVLLPS--YNIRPDGPGAPRG---RRFTFTAEHPGMRTY- 87
Query: 609 FKVNFNPYSFVLFAAPDESQLFDWLQDIMISIKINDD 645
+ AA L WL+ + + + D
Sbjct: 88 -----------VLAADTLEDLRGWLRALGRASRAEGD 113
>1v89_A Hypothetical protein KIAA0053; pleckstrin homology domain,
phosphatidylinositol binding, structural genomics; NMR
{Homo sapiens} SCOP: b.55.1.1
Length = 118
Score = 28.2 bits (63), Expect = 4.2
Identities = 13/102 (12%), Positives = 36/102 (35%), Gaps = 24/102 (23%)
Query: 549 VFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYDKSRPYT 608
V R+ L Y +++ G + L T+KE +P+ ++ +
Sbjct: 30 VLRAQQLYYYKDEEDTKPQGCMYLPG--CTIKEIATNPE---------------EAGKFV 72
Query: 609 FKVNFNPYSFV-------LFAAPDESQLFDWLQDIMISIKIN 643
F++ + + A ++++ +W++ +
Sbjct: 73 FEIIPASWDQNRMGQDSYVLMASSQAEMEEWVKFLRRVAGSG 114
>3lju_X ARF-GAP with dual PH domain-containing protein 1; structural
genomics consortium, GTPase activation, SGC, binding,
nucleus, phosphoprotein; HET: IP9; 1.70A {Homo sapiens}
PDB: 3feh_A* 3fm8_C 3mdb_C*
Length = 386
Score = 29.3 bits (65), Expect = 5.4
Identities = 15/92 (16%), Positives = 27/92 (29%), Gaps = 12/92 (13%)
Query: 549 VFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYDKSRPYT 608
LMY + A+ G V + S ++ + P+
Sbjct: 292 TMDDRRLMYFKDPLDAFARGEVFI-----------GSKESGYTVLHGFPPSTQGHHWPHG 340
Query: 609 FKVNFNPYSFVLFAAPDESQLFDWLQDIMISI 640
+ P LFA ES +W+ ++
Sbjct: 341 ITI-VTPDRKFLFACETESDQREWVAAFQKAV 371
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 29.0 bits (64), Expect = 5.9
Identities = 16/113 (14%), Positives = 37/113 (32%), Gaps = 9/113 (7%)
Query: 486 EIMCLKQHYTPSSVSAKQRHTLMRLLEHISSQTQYFNKCDEIILYSWSWIEQFSDISRTG 545
E+ + P + + +S +YF + L ++ + D+
Sbjct: 313 ELGNNNIFFIPKLDGVSAVDDVYKRSLQRTSIREYFYGSLDTALSPYAIGVDYEDL---- 368
Query: 546 HDQVFRSGNLMYKINDKSA---WTPGFVNLQNGILTVKEAPNSPKNISVIQCH 595
+++ N+ + T NLQ+ I+ + A +VI+
Sbjct: 369 --TIWKPSNVFDNEVGRVELFPVTITPSNLQHAIIAITFAERRADQATVIKSP 419
>3fni_A Putative diflavin flavoprotein A 3; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative, northeast
structural genomics consortium; 2.30A {Nostoc SP} PDB:
2klb_A
Length = 159
Score = 28.3 bits (63), Expect = 6.2
Identities = 9/40 (22%), Positives = 13/40 (32%)
Query: 312 IFESFTKMSETNININKKQFMSNMDKVFETIKTKFEPFAE 351
IFE+ E + K + F I+ K P
Sbjct: 92 IFETGGGDDEPIDPLLSKFRNLGLTTAFPAIRIKQTPTEN 131
>2i5f_A Pleckstrin; PH domain, protein-inositol phosphate complex, lipid
binding protein; HET: 5IP; 1.35A {Homo sapiens} SCOP:
b.55.1.1 PDB: 2i5c_A* 1zm0_A
Length = 109
Score = 27.4 bits (61), Expect = 6.7
Identities = 7/55 (12%), Positives = 17/55 (30%)
Query: 587 KNISVIQCHSFSQVYDKSRPYTFKVNFNPYSFVLFAAPDESQLFDWLQDIMISIK 641
+ V S S F++ A + +W++ I ++ +
Sbjct: 55 RGCVVTSVESNSNGRKSEEENLFEIITADEVHYFLQAATPKERTEWIKAIQMASR 109
>3a98_B Engulfment and cell motility protein 1; protein-protein complex,
DOCK2, ELMO1, SH3 domain, PH domain bundle, proline-rich
sequence, cytoskeleton; 2.10A {Homo sapiens} PDB: 2vsz_A
Length = 203
Score = 28.5 bits (63), Expect = 6.7
Identities = 19/136 (13%), Positives = 46/136 (33%), Gaps = 11/136 (8%)
Query: 554 NLMYK-INDKSAWTPGFVNLQNGILTVK-EAPNSPKNISVIQCHSFSQVYDKSRPYTFKV 611
L Y + + +LQ+ + +A + K+ ++ + + F +
Sbjct: 61 VLHYGDLEESPQGEVPHDSLQDKLPVADIKAVVTGKDCPHMKEKGALKQNKEVLELAFSI 120
Query: 612 NFNPYSFVLFAAPDESQLFDWLQDIMISIKINDDKKILVGKFAAPDESQLFDWLQDIMIS 671
++ + F APD+ + W + +L + D L + I
Sbjct: 121 LYDSNCQLNFIAPDKHEYCIWTDGL---------NALLGKDMMSDLTRNDLDTLLSMEIK 171
Query: 672 IKINDDKVISFMRSAP 687
+++ D + I + P
Sbjct: 172 LRLLDLENIQIPDAPP 187
>1u5d_A SKAP55, SRC kinase-associated phosphoprotein of 55 kDa; PH domain,
signaling protein; 1.70A {Homo sapiens} SCOP: b.55.1.1
Length = 108
Score = 27.0 bits (60), Expect = 8.1
Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 18/94 (19%)
Query: 549 VFRSGNLMYKINDKSAWTPGFVNLQNGILTVKEAPNSPKNISVIQCHSFSQVYDKSRPYT 608
V G Y N+KS G ++ +V+ AP+ + D +
Sbjct: 29 VVSRGLFYYYANEKSKQPKGTFLIKG--YSVRMAPHLRR--------------DSKKESC 72
Query: 609 FKVNF-NPYSFVLFAAPDESQLFDWLQDIMISIK 641
F++ + ++ F A ++ DW+ I +K
Sbjct: 73 FELTSQDRRTY-EFTATSPAEARDWVDQISFLLK 105
>2xio_A Putative deoxyribonuclease tatdn1; hydrolase; 1.19A {Homo sapiens}
Length = 301
Score = 28.4 bits (64), Expect = 9.6
Identities = 5/31 (16%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 225 YLRYL--KVAALKGISTVEVAKVVGFINTKR 253
++ + ++A++ +E+A + + NT +
Sbjct: 259 HIIQILEIMSAVRDEDPLELANTL-YNNTIK 288
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.391
Gapped
Lambda K H
0.267 0.0725 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 11,125,624
Number of extensions: 672777
Number of successful extensions: 1701
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1646
Number of HSP's successfully gapped: 74
Length of query: 749
Length of database: 6,701,793
Length adjustment: 101
Effective length of query: 648
Effective length of database: 3,881,772
Effective search space: 2515388256
Effective search space used: 2515388256
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.3 bits)