BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3408
(146 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T37|A Chain A, Crystal Structure Of Pyridoxine 4-Oxidase From Mesorbium
Loti
Length = 526
Score = 71.6 bits (174), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 51/85 (60%), Gaps = 5/85 (5%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL-PGYWFNLLKSRQDWAYRT 89
D +IVGGGSAG++LA RLSE+ D RVLLIEAG +P + P W L DW YRT
Sbjct: 19 DIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPALQGRSYDWDYRT 78
Query: 90 QPDNRMFFGLENRVNHWPRGKGLGG 114
+ G R +HW RG+ +GG
Sbjct: 79 EAQ----AGTAGRAHHWARGRLIGG 99
>pdb|3Q9T|A Chain A, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|B Chain B, Crystal Structure Analysis Of Formate Oxidase
pdb|3Q9T|C Chain C, Crystal Structure Analysis Of Formate Oxidase
Length = 577
Score = 61.2 bits (147), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 5/88 (5%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG-GDPPEASEL--PGYWFNLLKSRQDWA 86
FDF+IVGGG+AG +A RL+E + VL++EAG G+P + E+ P +L S+ DWA
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 87 YRTQPDNRMFFGLENRVNHWPRGKGLGG 114
Y+T R + + N RGK LGG
Sbjct: 67 YKTTMVRRDDYERIEKPNT--RGKTLGG 92
>pdb|3FIM|B Chain B, Crystal Structure Of Aryl-Alcohol-Oxidase From Pleurotus
Eryingii
Length = 566
Score = 47.8 bits (112), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/90 (37%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE--ASELPGYWFNLL-KSRQD 84
FD+++VG G+AG V+A RL+E+ D VL++EAG +E P L+ S D
Sbjct: 1 ADFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFD 60
Query: 85 WAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
W Y T G R +PRG+ LGG
Sbjct: 61 WNYTTTAQ----AGYNGRSIAYPRGRMLGG 86
>pdb|1GPE|A Chain A, Glucose Oxidase From Penicillium Amagasakiense
pdb|1GPE|B Chain B, Glucose Oxidase From Penicillium Amagasakiense
Length = 587
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 47/93 (50%), Gaps = 10/93 (10%)
Query: 26 ISGK-FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG---GDPPEASELPGYWFNLLKS 81
++GK +D+II GGG G +A +L+E +VL+IE G + E P + + +
Sbjct: 20 VAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNAYGQIFGT 79
Query: 82 RQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
D Y T P + NR N+ GKGLGG
Sbjct: 80 TVDQNYLTVP------LINNRTNNIKAGKGLGG 106
>pdb|1JU2|A Chain A, Crystal Structure Of The Hydroxynitrile Lyase From
Almond
pdb|1JU2|B Chain B, Crystal Structure Of The Hydroxynitrile Lyase From
Almond
Length = 536
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 16 FTVVSTAED----NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP---PEA 68
F+ +S A D + G +D++IVGGG++G LA LSE+ ++VL++E G P P
Sbjct: 9 FSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNV 66
Query: 69 SELPGYWFNLLK 80
G+ +NL +
Sbjct: 67 LTADGFVYNLQQ 78
>pdb|3GDN|A Chain A, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDN|B Chain B, Almond Hydroxynitrile Lyase In Complex With Benzaldehyde
pdb|3GDP|A Chain A, Hydroxynitrile Lyase From Almond, Monoclinic Crystal
Form
pdb|3GDP|B Chain B, Hydroxynitrile Lyase From Almond, Monoclinic Crystal
Form
Length = 521
Score = 42.0 bits (97), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 9/72 (12%)
Query: 16 FTVVSTAED----NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP---PEA 68
F+ +S A D + G +D++IVGGG++G LA LSE+ ++VL++E G P P
Sbjct: 9 FSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERGSLPTAYPNV 66
Query: 69 SELPGYWFNLLK 80
G+ +NL +
Sbjct: 67 LTADGFVYNLQQ 78
>pdb|3RED|A Chain A, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|B Chain B, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|C Chain C, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|D Chain D, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|E Chain E, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|F Chain F, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|G Chain G, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|H Chain H, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|I Chain I, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|J Chain J, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|K Chain K, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
pdb|3RED|L Chain L, 3.0 A Structure Of The Prunus Mume Hydroxynitrile Lyase
Isozyme-1
Length = 521
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 41/70 (58%), Gaps = 13/70 (18%)
Query: 16 FTVVSTAED----NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL 71
F+ +S A D + G +D++IVGGG++G LA LSE+ ++VL++E G L
Sbjct: 9 FSYLSFAYDATDLELEGSYDYVIVGGGTSGCPLAATLSEK--YKVLVLERG-------TL 59
Query: 72 PGYWFNLLKS 81
P + NLL S
Sbjct: 60 PTAYPNLLTS 69
>pdb|2JBV|A Chain A, Crystal Structure Of Choline Oxidase Reveals Insights
Into The Catalytic Mechanism
pdb|2JBV|B Chain B, Crystal Structure Of Choline Oxidase Reveals Insights
Into The Catalytic Mechanism
Length = 546
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 24 DNISGK-FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP---PEASELPGYWFNLL 79
+N+S + FD+I+VGGGSAGA +A RLSE+ V L+EAG D PE +L W LL
Sbjct: 7 ENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQL-DRWMELL 65
Query: 80 KSRQDWAYRTQP 91
+S DW Y +P
Sbjct: 66 ESGYDWDYPIEP 77
>pdb|3NNE|A Chain A, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|B Chain B, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|C Chain C, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|D Chain D, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|E Chain E, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|F Chain F, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|G Chain G, Crystal Structure Of Choline Oxidase S101a Mutant
pdb|3NNE|H Chain H, Crystal Structure Of Choline Oxidase S101a Mutant
Length = 546
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 24 DNISGK-FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP---PEASELPGYWFNLL 79
+N+S + FD+I+VGGGSAGA +A RLSE+ V L+EAG D PE +L W LL
Sbjct: 7 ENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQL-DRWMELL 65
Query: 80 KSRQDWAYRTQP 91
+S DW Y +P
Sbjct: 66 ESGYDWDYPIEP 77
>pdb|3LJP|A Chain A, Crystal Structure Of Choline Oxidase V464a Mutant
pdb|3LJP|B Chain B, Crystal Structure Of Choline Oxidase V464a Mutant
Length = 546
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 46/72 (63%), Gaps = 5/72 (6%)
Query: 24 DNISGK-FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP---PEASELPGYWFNLL 79
+N+S + FD+I+VGGGSAGA +A RLSE+ V L+EAG D PE +L W LL
Sbjct: 7 ENLSDREFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQL-DRWMELL 65
Query: 80 KSRQDWAYRTQP 91
+S DW Y +P
Sbjct: 66 ESGYDWDYPIEP 77
>pdb|3HDQ|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDQ|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase
(Oxidized Form) In Complex With Substrate
pdb|3HDY|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HDY|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase (Reduced
Form) In Complex With Substrate
pdb|3HE3|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3HE3|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Udp
pdb|3MJ4|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|I Chain I, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
pdb|3MJ4|J Chain J, Crystal Structure Of Udp-Galactopyranose Mutase In
Complex With Phosphonate Analog Of Udp-Galactopyranose
Length = 397
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 27/41 (65%), Gaps = 1/41 (2%)
Query: 20 STAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
+T E S FD++IVG G AG+VLA RL+ RVL+++
Sbjct: 20 TTNEQQESKGFDYLIVGAGFAGSVLAERLASS-GQRVLIVD 59
>pdb|1CF3|A Chain A, Glucose Oxidase From Apergillus Niger
pdb|1GAL|A Chain A, Crystal Structure Of Glucose Oxidase From Aspergillus
Niger: Refined At 2.3 Angstroms Resolution
pdb|3QVP|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group C2221
At 1.2 A Resolution
pdb|3QVR|A Chain A, Crystal Structure Of Glucose Oxidase For Space Group P3121
At 1.3 A Resolution
Length = 583
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 11/99 (11%)
Query: 21 TAEDNISGK-FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP----PEASELPGYW 75
T ++SG+ D+II GGG G A RL+E + VL+IE+G P +L Y
Sbjct: 10 TDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLNAYG 69
Query: 76 FNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
++ S D AY T + N+ G GLGG
Sbjct: 70 -DIFGSSVDHAYET-----VELATNNQTALIRSGNGLGG 102
>pdb|1KDG|A Chain A, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
pdb|1KDG|B Chain B, Crystal Structure Of The Flavin Domain Of Cellobiose
Dehydrogenase
Length = 546
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
+D+IIVG G G + A+RLSE +VLL+E GG
Sbjct: 8 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGG 40
>pdb|1NAA|A Chain A, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
pdb|1NAA|B Chain B, Cellobiose Dehydrogenase Flavoprotein Fragment In
Complex With Cellobionolactam
Length = 541
Score = 35.8 bits (81), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
+D+IIVG G G + A+RLSE +VLL+E GG
Sbjct: 3 YDYIIVGAGPGGIIAADRLSEAGK-KVLLLERGG 35
>pdb|1V0J|A Chain A, Udp-galactopyranose Mutase From Mycobacterium
Tuberculosis
pdb|1V0J|B Chain B, Udp-galactopyranose Mutase From Mycobacterium
Tuberculosis
pdb|1V0J|C Chain C, Udp-galactopyranose Mutase From Mycobacterium
Tuberculosis
pdb|1V0J|D Chain D, Udp-galactopyranose Mutase From Mycobacterium
Tuberculosis
Length = 399
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 24/35 (68%)
Query: 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
++ +FD +VG G G +A R++ +LD RVL++E
Sbjct: 4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38
>pdb|1I8T|A Chain A, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
pdb|1I8T|B Chain B, Strcuture Of Udp-Galactopyranose Mutase From E.Coli
Length = 367
Score = 33.1 bits (74), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 17/31 (54%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
+D+IIVG G GAV AN L ++L+ +VL+IE
Sbjct: 2 YDYIIVGSGLFGAVCANEL-KKLNKKVLVIE 31
>pdb|2GMH|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMH|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase In Complexed With Ubiquinone
pdb|2GMJ|A Chain A, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
pdb|2GMJ|B Chain B, Structure Of Porcine Electron Transfer Flavoprotein-
Ubiquinone Oxidoreductase
Length = 584
Score = 30.4 bits (67), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 14/70 (20%)
Query: 5 SSLLLTLISTVFTVVSTAEDN---------ISGKFDFIIVGGGSAGAVLANRLSE----- 50
S+ + I+T +T+ +D + + D +IVG G AG A RL +
Sbjct: 2 STCKVPRITTHYTIYPRDQDKRWEGVNMERFAEEADVVIVGAGPAGLSAATRLKQLAAQH 61
Query: 51 ELDWRVLLIE 60
E D RV L+E
Sbjct: 62 EKDLRVCLVE 71
>pdb|3JSK|A Chain A, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|B Chain B, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|C Chain C, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|D Chain D, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|E Chain E, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|F Chain F, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|G Chain G, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|H Chain H, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|I Chain I, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|J Chain J, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|K Chain K, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|L Chain L, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|M Chain M, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|N Chain N, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|O Chain O, Thiazole Synthase From Neurospora Crassa
pdb|3JSK|P Chain P, Thiazole Synthase From Neurospora Crassa
Length = 344
Score = 30.4 bits (67), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 22 AEDNISGKFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDPPEASELPGYWFNLLK 80
A+ + + D +IVG GS G A LS D R+ ++EAG P + L G F+ +
Sbjct: 72 ADLDAHAETDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMV 131
Query: 81 SRQ 83
R+
Sbjct: 132 MRK 134
>pdb|1RP0|A Chain A, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
pdb|1RP0|B Chain B, Crystal Structure Of Thi1 Protein From Arabidopsis
Thaliana
Length = 284
Score = 30.0 bits (66), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQ 83
D ++VG GSAG A +S+ + +V +IE P + L G F+ + R+
Sbjct: 41 DVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFSAMIVRK 93
>pdb|3BHF|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHF|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Peg As Precipitant
pdb|3BHK|A Chain A, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
pdb|3BHK|B Chain B, Crystal Structure Of R49k Mutant Of Monomeric Sarcosine
Oxidase Crystallized In Phosphate As Precipitant
Length = 390
Score = 28.5 bits (62), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
+S FD I+VG GS G +L+++ + LL++A DPP +
Sbjct: 1 MSTHFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDA-FDPPHTN 42
>pdb|1I6V|C Chain C, Thermus Aquaticus Core Rna Polymerase-Rifampicin Complex
Length = 1118
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 42 AVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDW----AYRTQPDNRMFF 97
AVLA R EE R+ + GDPP+ + Y F LL + + A R + + ++
Sbjct: 225 AVLAMR-PEEAMVRLFTLLRPGDPPKKDKALAYLFGLLADPKRYDLGEAGRYKAEEKLGV 283
Query: 98 GLENR 102
GL R
Sbjct: 284 GLSGR 288
>pdb|1HQM|C Chain C, Crystal Structure Of Thermus Aquaticus Core Rna
Polymerase- Includes Complete Structure With Side-Chains
(Except For Disordered Regions)-Further Refined From
Original Deposition-Contains Additional Sequence
Information
Length = 1119
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 42 AVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDW----AYRTQPDNRMFF 97
AVLA R EE R+ + GDPP+ + Y F LL + + A R + + ++
Sbjct: 225 AVLAMR-PEEAMVRLFTLLRPGDPPKKDKALAYLFGLLADPKRYDLGEAGRYKAEEKLGV 283
Query: 98 GLENR 102
GL R
Sbjct: 284 GLSGR 288
>pdb|1YNJ|C Chain C, Taq Rna Polymerase-Sorangicin Complex
pdb|1YNN|C Chain C, Taq Rna Polymerase-rifampicin Complex
pdb|2GHO|C Chain C, Recombinant Thermus Aquaticus Rna Polymerase For
Structural Studies
Length = 1119
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 42 AVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDW----AYRTQPDNRMFF 97
AVLA R EE R+ + GDPP+ + Y F LL + + A R + + ++
Sbjct: 225 AVLAMR-PEEAMVRLFTLLRPGDPPKKDKALAYLFGLLADPKRYDLGEAGRYKAEEKLGV 283
Query: 98 GLENR 102
GL R
Sbjct: 284 GLSGR 288
>pdb|1L9U|C Chain C, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9U|L Chain L, Thermus Aquaticus Rna Polymerase Holoenzyme At 4 A
Resolution
pdb|1L9Z|C Chain C, Thermus Aquaticus Rna Polymerase HoloenzymeFORK-Junction
Promoter Dna Complex At 6.5 A Resolution
Length = 1118
Score = 27.7 bits (60), Expect = 2.1, Method: Composition-based stats.
Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 5/65 (7%)
Query: 42 AVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDW----AYRTQPDNRMFF 97
AVLA R EE R+ + GDPP+ + Y F LL + + A R + + ++
Sbjct: 225 AVLAMR-PEEAMVRLFTLLRPGDPPKKDKALAYLFGLLADPKRYDLGEAGRYKAEEKLGV 283
Query: 98 GLENR 102
GL R
Sbjct: 284 GLSGR 288
>pdb|3M12|A Chain A, Crystal Structure Of The Lys265arg
Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase
pdb|3M12|B Chain B, Crystal Structure Of The Lys265arg
Phosphate-Crytsallized Mu Monomeric Sarcosine Oxidase
pdb|3M13|A Chain A, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|B Chain B, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|C Chain C, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
pdb|3M13|D Chain D, Crystal Structure Of The Lys265arg Peg-crystallized
Mutant Of Monomeric Sarcosine Oxidase
Length = 389
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
S FD I+VG GS G +L+++ + LL++A DPP +
Sbjct: 1 STHFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDA-FDPPHTN 41
>pdb|3M0O|A Chain A, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
pdb|3M0O|B Chain B, Crystal Structure Of The Lys265met Mutant Of Monomeric
Sarcosine Oxidase
Length = 389
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
S FD I+VG GS G +L+++ + LL++A DPP +
Sbjct: 1 STHFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDA-FDPPHTN 41
>pdb|1EL5|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor Dimethylglycine
pdb|1EL5|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor Dimethylglycine
pdb|1EL7|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methytelluro]acetate
pdb|1EL7|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methytelluro]acetate
pdb|1EL8|A Chain A, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methylseleno]cetate
pdb|1EL8|B Chain B, Complex Of Monomeric Sarcosine Oxidase With The
Inhibitor [methylseleno]cetate
pdb|1L9E|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9E|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|2A89|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2A89|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|A Chain A, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GB0|B Chain B, Monomeric Sarcosine Oxidase: Structure Of A Covalently
Flavinylated Amine Oxidizing Enzyme
pdb|2GF3|A Chain A, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|2GF3|B Chain B, Structure Of The Complex Of Monomeric Sarcosine With Its
Substrate Analogue Inhibitor 2-Furoic Acid At 1.3 A
Resolution.
pdb|3QSE|A Chain A, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSE|B Chain B, Crystal Structure For The Complex Of Substrate-Reduced
Msox With Sarcosine
pdb|3QSM|A Chain A, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSM|B Chain B, Crystal Structure For The Msox.Chloride Binary Complex
pdb|3QSS|A Chain A, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
pdb|3QSS|B Chain B, Crystal Structure For The Msox.Chloride.Mta Ternary
Complex
Length = 389
Score = 27.7 bits (60), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
S FD I+VG GS G +L+++ + LL++A DPP +
Sbjct: 1 STHFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDA-FDPPHTN 41
>pdb|1L9C|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9C|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9D|A Chain A, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
pdb|1L9D|B Chain B, Role Of Histidine 269 In Catalysis By Monomeric
Sarcosine Oxidase
Length = 389
Score = 27.7 bits (60), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
S FD I+VG GS G +L+++ + LL++A DPP +
Sbjct: 1 STHFDVIVVGAGSMGMAAGYQLAKQ-GVKTLLVDA-FDPPHTN 41
>pdb|3ATQ|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius
pdb|3ATR|A Chain A, Geranylgeranyl Reductase (Ggr) From Sulfolobus
Acidocaldarius Co- Crystallized With Its Ligand
Length = 453
Score = 27.7 bits (60), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 30/56 (53%), Gaps = 6/56 (10%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG-----GDPPEASELPGYWFNLL 79
K+D +I+GGG AG+ A +LS ++LL+++ GD P + F+ L
Sbjct: 6 KYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSKPWNRIGDKPCGDAVSKAHFDKL 60
>pdb|2GW1|A Chain A, Crystal Structure Of The Yeast Tom70
pdb|2GW1|B Chain B, Crystal Structure Of The Yeast Tom70
Length = 514
Score = 27.7 bits (60), Expect = 2.7, Method: Composition-based stats.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 42 AVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDW 85
A LA R ++ D L EA PEA E+P ++ +L + D+
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDF 388
>pdb|3LAD|A Chain A, Refined Crystal Structure Of Lipoamide Dehydrogenase
From Azotobacter Vinelandii At 2.2 Angstroms
Resolution. A Comparison With The Structure Of
Glutathione Reductase
pdb|3LAD|B Chain B, Refined Crystal Structure Of Lipoamide Dehydrogenase
From Azotobacter Vinelandii At 2.2 Angstroms
Resolution. A Comparison With The Structure Of
Glutathione Reductase
Length = 476
Score = 27.3 bits (59), Expect = 2.8, Method: Composition-based stats.
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
S KFD I++G G G V A + S +L + LIE
Sbjct: 1 SQKFDVIVIGAGPGGYVAAIK-SAQLGLKTALIE 33
>pdb|1O5W|A Chain A, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|B Chain B, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|C Chain C, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
pdb|1O5W|D Chain D, The Structure Basis Of Specific Recognitions For
Substrates And Inhibitors Of Rat Monoamine Oxidase A
Length = 534
Score = 27.3 bits (59), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 25 NISGK-FDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
N++G FD +++GGG +G A LS E VL++EA
Sbjct: 16 NLAGHMFDVVVIGGGISGLAAAKLLS-EYKINVLVLEA 52
>pdb|3E1T|A Chain A, Structure And Action Of The Myxobacterial Chondrochloren
Halogenase Cndh, A New Variant Of Fad-Dependent
Halogenases
Length = 512
Score = 26.9 bits (58), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
FD I++GGG G+ LA+ ++ RVLL+E
Sbjct: 8 FDLIVIGGGPGGSTLASFVAMR-GHRVLLLE 37
>pdb|2R9Z|A Chain A, Glutathione Amide Reductase From Chromatium Gracile
pdb|2R9Z|B Chain B, Glutathione Amide Reductase From Chromatium Gracile
pdb|2RAB|A Chain A, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
pdb|2RAB|B Chain B, Structure Of Glutathione Amide Reductase From Chromatium
Gracile In Complex With Nad
Length = 463
Score = 26.9 bits (58), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
++ FD I +GGGS G +A + + RV LIE+
Sbjct: 1 MTQHFDLIAIGGGSGGLAVAEK-AAAFGKRVALIES 35
>pdb|2WES|A Chain A, Crystal Structures Of Mutant E46q Of Tryptophan 5-
Halogenase (pyrh)
pdb|2WES|B Chain B, Crystal Structures Of Mutant E46q Of Tryptophan 5-
Halogenase (pyrh)
pdb|2WES|C Chain C, Crystal Structures Of Mutant E46q Of Tryptophan 5-
Halogenase (pyrh)
pdb|2WES|D Chain D, Crystal Structures Of Mutant E46q Of Tryptophan 5-
Halogenase (pyrh)
Length = 511
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 33 IIVGGGSAGAVLANRLSEELDWR--VLLIEAG 62
+IVGGG+AG + A+ L D R V L+E+G
Sbjct: 6 VIVGGGTAGWMTASYLKAAFDDRIDVTLVESG 37
>pdb|2WET|A Chain A, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Fad (Tryptophan)
pdb|2WET|B Chain B, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Fad (Tryptophan)
pdb|2WET|C Chain C, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Fad (Tryptophan)
pdb|2WET|D Chain D, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Fad (Tryptophan)
pdb|2WEU|A Chain A, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Substrate Tryptophan
pdb|2WEU|B Chain B, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Substrate Tryptophan
pdb|2WEU|C Chain C, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Substrate Tryptophan
pdb|2WEU|D Chain D, Crystal Structure Of Tryptophan 5-Halogenase (Pyrh)
Complex With Substrate Tryptophan
Length = 511
Score = 26.6 bits (57), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 21/32 (65%), Gaps = 2/32 (6%)
Query: 33 IIVGGGSAGAVLANRLSEELDWR--VLLIEAG 62
+IVGGG+AG + A+ L D R V L+E+G
Sbjct: 6 VIVGGGTAGWMTASYLKAAFDDRIDVTLVESG 37
>pdb|1MO9|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MO9|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE Complexed With 2-Ketopropyl
Coenzyme M
pdb|1MOK|A Chain A, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|B Chain B, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|C Chain C, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|1MOK|D Chain D, Nadph Dependent 2-Ketopropyl Coenzyme M
OxidoreductaseCARBOXYLASE
pdb|2C3D|A Chain A, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme
M Oxidoreductase Carboxylase With A Coenzyme M
Disulfide Bound At The Active Site
pdb|2C3D|B Chain B, 2.15 Angstrom Crystal Structure Of 2-Ketopropyl Coenzyme
M Oxidoreductase Carboxylase With A Coenzyme M
Disulfide Bound At The Active Site
pdb|2C3C|A Chain A, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed
Disulfide Between Coenzyme M And Nadph-Dependent
Oxidoreductase 2- Ketopropyl Coenzyme M Carboxylase
pdb|2C3C|B Chain B, 2.01 Angstrom X-Ray Crystal Structure Of A Mixed
Disulfide Between Coenzyme M And Nadph-Dependent
Oxidoreductase 2- Ketopropyl Coenzyme M Carboxylase
pdb|3Q6J|A Chain A, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
pdb|3Q6J|B Chain B, Structural Basis For Carbon Dioxide Binding By
2-Ketopropyl Coenzyme M OxidoreductaseCARBOXYLASE
Length = 523
Score = 26.2 bits (56), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 18 VVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA----GGDPPEASELPG 73
V+ ++N ++D I +GGG+AG + L + R L+++ GG P + +P
Sbjct: 32 VIYNVDENDPREYDAIFIGGGAAGRFGSAYL-RAMGGRQLIVDRWPFLGGSCPHNACVPH 90
Query: 74 YWFN 77
+ F+
Sbjct: 91 HLFS 94
>pdb|2E4G|A Chain A, Rebh With Bound L-Trp
pdb|2E4G|B Chain B, Rebh With Bound L-Trp
pdb|2OAL|A Chain A, Rebh With Bound Fad
pdb|2OAL|B Chain B, Rebh With Bound Fad
pdb|2OAM|A Chain A, Apo Rebh From Lechevalieria Aerocolonigenes
pdb|2OAM|B Chain B, Apo Rebh From Lechevalieria Aerocolonigenes
pdb|2O9Z|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The Apo Form
pdb|2O9Z|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The Apo Form
pdb|2OA1|B Chain B, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The L-Tryptophan
With Fad Complex
pdb|2OA1|A Chain A, Crystal Structure Of Rebh, A Fad-Dependent Halogenase
From Lechevalieria Aerocolonigenes, The L-Tryptophan
With Fad Complex
Length = 550
Score = 25.8 bits (55), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
Query: 25 NISGKFDFI-IVGGGSAGAVLANRLSEEL 52
++SGK D I IVGGG+AG + A+ L + L
Sbjct: 20 HMSGKIDKILIVGGGTAGWMAASYLGKAL 48
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,485,856
Number of Sequences: 62578
Number of extensions: 187956
Number of successful extensions: 619
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 29
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 69
length of query: 146
length of database: 14,973,337
effective HSP length: 90
effective length of query: 56
effective length of database: 9,341,317
effective search space: 523113752
effective search space used: 523113752
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 46 (22.3 bits)