BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3408
(146 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P18172|DHGL_DROPS Glucose dehydrogenase [acceptor] OS=Drosophila pseudoobscura
pseudoobscura GN=Gld PE=3 SV=4
Length = 625
Score = 91.7 bits (226), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYR 88
++DFI++GGGSAG+V+A+RLSE W+VLLIEAGGD P +++P + N + S D+ Y
Sbjct: 64 EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123
Query: 89 TQPDNRMFFGLENRVNHWPRGKGLGGFPA-TGLIY 122
T+P+ + +WPRGK LGG G++Y
Sbjct: 124 TEPERMACLSSMEQRCYWPRGKVLGGTSVMNGMMY 158
>sp|P18173|DHGL_DROME Glucose dehydrogenase [acceptor] OS=Drosophila melanogaster GN=Gld
PE=3 SV=3
Length = 625
Score = 91.3 bits (225), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 43/95 (45%), Positives = 63/95 (66%), Gaps = 1/95 (1%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYR 88
++DFI++GGGSAG+V+A+RLSE W+VLLIEAGGD P +++P + N + S D+ Y
Sbjct: 64 EYDFIVIGGGSAGSVVASRLSEVPQWKVLLIEAGGDEPVGAQIPSMFLNFIGSDIDYRYN 123
Query: 89 TQPDNRMFFGLENRVNHWPRGKGLGGFPA-TGLIY 122
T+P+ + +WPRGK LGG G++Y
Sbjct: 124 TEPEPMACLSSMEQRCYWPRGKVLGGTSVLNGMMY 158
>sp|Q9AJD6|PNO_MICLT Pyridoxine 4-oxidase OS=Microbacterium luteolum GN=pno PE=1 SV=3
Length = 507
Score = 70.1 bits (170), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 40/87 (45%), Positives = 49/87 (56%), Gaps = 5/87 (5%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL-PGYWFNLLKSRQDWAY 87
++D I+G GSAGA++A RLSE+ VLLIEAGG P + L P W + DW Y
Sbjct: 3 QYDVAIIGAGSAGALIAARLSEDPARNVLLIEAGGRPSDPDILKPSMWPAIQHRSYDWDY 62
Query: 88 RTQPDNRMFFGLENRVNHWPRGKGLGG 114
+T P G R W RGKGLGG
Sbjct: 63 KTTPQE----GAAGRSFAWARGKGLGG 85
>sp|A4XPI5|BETA_PSEMY Choline dehydrogenase OS=Pseudomonas mendocina (strain ymp) GN=betA
PE=3 SV=1
Length = 565
Score = 69.7 bits (169), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 12/95 (12%)
Query: 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLL 79
+S +FD+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L
Sbjct: 1 MSHEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGG--PDYRLDFRTQMPAALAFPLQ 58
Query: 80 KSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
R +WAY T P+ M NR RGKGLGG
Sbjct: 59 GRRYNWAYETDPEPHM----NNRRMECGRGKGLGG 89
>sp|C6DKY4|BETA_PECCP Choline dehydrogenase OS=Pectobacterium carotovorum subsp.
carotovorum (strain PC1) GN=betA PE=3 SV=1
Length = 559
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/92 (46%), Positives = 55/92 (59%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
++D+II+G GSAG VLA RL+EE D VLL+EAGG P+ +++P F L R
Sbjct: 2 EYDYIIIGAGSAGNVLATRLTEESDVSVLLLEAGG--PDYRLDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T P+ M NR RGKGLGG
Sbjct: 60 YNWAYETDPEPHM----NNRRMECGRGKGLGG 87
>sp|A6VEI3|BETA_PSEA7 Choline dehydrogenase OS=Pseudomonas aeruginosa (strain PA7)
GN=betA PE=3 SV=1
Length = 561
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 12/95 (12%)
Query: 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLL 79
+S +FD+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L
Sbjct: 1 MSQEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGG--PDYRFDFRTQMPAALAFPLQ 58
Query: 80 KSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
R +WAY T P+ M NR RGKGLGG
Sbjct: 59 GRRYNWAYETDPEPYM----NNRRMECGRGKGLGG 89
>sp|Q9HTJ2|BETA_PSEAE Choline dehydrogenase OS=Pseudomonas aeruginosa (strain ATCC 15692
/ PAO1 / 1C / PRS 101 / LMG 12228) GN=betA PE=3 SV=1
Length = 561
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 12/95 (12%)
Query: 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLL 79
+S +FD+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L
Sbjct: 1 MSQEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGG--PDYRFDFRTQMPAALAFPLQ 58
Query: 80 KSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
R +WAY T P+ M NR RGKGLGG
Sbjct: 59 GRRYNWAYETDPEPYM----NNRRMECGRGKGLGG 89
>sp|B7V5R3|BETA_PSEA8 Choline dehydrogenase OS=Pseudomonas aeruginosa (strain LESB58)
GN=betA PE=3 SV=1
Length = 561
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 12/95 (12%)
Query: 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLL 79
+S +FD+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L
Sbjct: 1 MSQEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGG--PDYRFDFRTQMPAALAFPLQ 58
Query: 80 KSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
R +WAY T P+ M NR RGKGLGG
Sbjct: 59 GRRYNWAYETDPEPYM----NNRRMECGRGKGLGG 89
>sp|A8AJN0|BETA_CITK8 Choline dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 /
CDC 4225-83 / SGSC4696) GN=betA PE=3 SV=1
Length = 558
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/90 (46%), Positives = 54/90 (60%), Gaps = 8/90 (8%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEA---SELPGYW-FNLLKSRQD 84
FD+II+G GSAG VLA RL+E+ D VLL+EAGG A +++P F L R +
Sbjct: 2 HFDYIIIGAGSAGNVLATRLTEDSDTTVLLLEAGGPDYRADFRTQMPAALAFPLQGKRYN 61
Query: 85 WAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
WAY T+P+ M + R RGKGLGG
Sbjct: 62 WAYETEPEPHMNY----RRMECGRGKGLGG 87
>sp|Q02DZ0|BETA_PSEAB Choline dehydrogenase OS=Pseudomonas aeruginosa (strain UCBPP-PA14)
GN=betA PE=3 SV=1
Length = 561
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 57/95 (60%), Gaps = 12/95 (12%)
Query: 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLL 79
+S +FD+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L
Sbjct: 1 MSQEFDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGG--PDYRFDFRTQMPAALAFPLQ 58
Query: 80 KSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
R +WAY T P+ M NR RGKGLGG
Sbjct: 59 GRRYNWAYETDPEPYM----NNRRMECGRGKGLGG 89
>sp|B2TCJ8|BETA_BURPP Choline dehydrogenase OS=Burkholderia phytofirmans (strain DSM
17436 / PsJN) GN=betA PE=3 SV=1
Length = 561
Score = 67.4 bits (163), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 57/94 (60%), Gaps = 12/94 (12%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLK 80
+ ++D+IIVG GSAG VLA+RL+E+ D VLL+EAGG P+ +++P F L
Sbjct: 3 ANEYDYIIVGAGSAGNVLASRLTEDADVTVLLLEAGG--PDYRFDFRTQMPAALAFPLQG 60
Query: 81 SRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
R +WAY T P+ M NR RGKGLGG
Sbjct: 61 RRYNWAYETDPEPHM----NNRRMECGRGKGLGG 90
>sp|Q66D54|BETA_YERPS Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype I
(strain IP32953) GN=betA PE=3 SV=1
Length = 567
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
++D+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L R
Sbjct: 2 EYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGG--PDYRLDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T P+ M NR RGKGLGG
Sbjct: 60 YNWAYETDPEPHM----NNRRMECGRGKGLGG 87
>sp|B2K8U4|BETA_YERPB Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype IB
(strain PB1/+) GN=betA PE=3 SV=1
Length = 567
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
++D+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L R
Sbjct: 2 EYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGG--PDYRLDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T P+ M NR RGKGLGG
Sbjct: 60 YNWAYETDPEPHM----NNRRMECGRGKGLGG 87
>sp|A8GBX9|BETA_SERP5 Choline dehydrogenase OS=Serratia proteamaculans (strain 568)
GN=betA PE=3 SV=1
Length = 555
Score = 67.0 bits (162), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
++D+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L R
Sbjct: 2 EYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGG--PDYRMDFRTQMPAALAFPLQGRR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T P+ M NR RGKGLGG
Sbjct: 60 YNWAYETDPEPHM----NNRRMECGRGKGLGG 87
>sp|A4TNP2|BETA_YERPP Choline dehydrogenase OS=Yersinia pestis (strain Pestoides F)
GN=betA PE=3 SV=1
Length = 567
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
++D+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L R
Sbjct: 2 EYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGG--PDYRLDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T P+ M NR RGKGLGG
Sbjct: 60 YNWAYETDPEPHM----NNRRMECGRGKGLGG 87
>sp|Q1CFR7|BETA_YERPN Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Nepal516) GN=betA PE=3 SV=1
Length = 567
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
++D+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L R
Sbjct: 2 EYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGG--PDYRLDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T P+ M NR RGKGLGG
Sbjct: 60 YNWAYETDPEPHM----NNRRMECGRGKGLGG 87
>sp|Q8ZGW0|BETA_YERPE Choline dehydrogenase OS=Yersinia pestis GN=betA PE=3 SV=1
Length = 567
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
++D+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L R
Sbjct: 2 EYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGG--PDYRLDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T P+ M NR RGKGLGG
Sbjct: 60 YNWAYETDPEPHM----NNRRMECGRGKGLGG 87
>sp|Q1C932|BETA_YERPA Choline dehydrogenase OS=Yersinia pestis bv. Antiqua (strain
Antiqua) GN=betA PE=3 SV=1
Length = 567
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
++D+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L R
Sbjct: 2 EYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGG--PDYRLDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T P+ M NR RGKGLGG
Sbjct: 60 YNWAYETDPEPHM----NNRRMECGRGKGLGG 87
>sp|B1JSR0|BETA_YERPY Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:3
(strain YPIII) GN=betA PE=3 SV=1
Length = 567
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
++D+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L R
Sbjct: 2 EYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGG--PDYRLDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T P+ M NR RGKGLGG
Sbjct: 60 YNWAYETDPEPHM----NNRRMECGRGKGLGG 87
>sp|A7FKL6|BETA_YERP3 Choline dehydrogenase OS=Yersinia pseudotuberculosis serotype O:1b
(strain IP 31758) GN=betA PE=3 SV=1
Length = 567
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
++D+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L R
Sbjct: 2 EYDYIIIGAGSAGNVLAARLTEDADVTVLLLEAGG--PDYRLDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T P+ M NR RGKGLGG
Sbjct: 60 YNWAYETDPEPHM----NNRRMECGRGKGLGG 87
>sp|B2FQ89|BETA_STRMK Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
K279a) GN=betA PE=3 SV=1
Length = 560
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
++D+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L R
Sbjct: 6 EYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGG--PDYRLDFRTQMPAALAFPLQGKR 63
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY+T P+ M NR RGKGLGG
Sbjct: 64 YNWAYKTDPEPFM----NNRRMDCGRGKGLGG 91
>sp|B4SHV9|BETA_STRM5 Choline dehydrogenase OS=Stenotrophomonas maltophilia (strain
R551-3) GN=betA PE=3 SV=1
Length = 560
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
++D+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P F L R
Sbjct: 6 EYDYIIIGAGSAGNVLATRLTEDADVSVLLLEAGG--PDYRLDFRTQMPAALAFPLQGKR 63
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY+T P+ M NR RGKGLGG
Sbjct: 64 YNWAYKTDPEPFM----NNRRMDCGRGKGLGG 91
>sp|Q6D6D9|BETA_ERWCT Choline dehydrogenase OS=Erwinia carotovora subsp. atroseptica
(strain SCRI 1043 / ATCC BAA-672) GN=betA PE=3 SV=1
Length = 559
Score = 66.6 bits (161), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 55/92 (59%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
++D+II+G GSAG VLA RL+EE D VLL+EAGG P+ +++P F L R
Sbjct: 2 EYDYIIIGAGSAGNVLAARLTEESDVSVLLLEAGG--PDYRLDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T P+ M +R RGKGLGG
Sbjct: 60 YNWAYETDPEPHM----NDRRMECGRGKGLGG 87
>sp|A7MFA8|BETA_CROS8 Choline dehydrogenase OS=Cronobacter sakazakii (strain ATCC
BAA-894) GN=betA PE=3 SV=1
Length = 559
Score = 66.2 bits (160), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P + L R
Sbjct: 2 EFDYIIIGAGSAGNVLATRLTEDSDVTVLLLEAGG--PDYRFDFRTQMPAALAYPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPYM----NNRRMECGRGKGLGG 87
>sp|Q6FDF9|BETA_ACIAD Choline dehydrogenase OS=Acinetobacter sp. (strain ADP1) GN=betA
PE=3 SV=1
Length = 553
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 55/91 (60%), Gaps = 12/91 (13%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSRQ 83
FD+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P + L R
Sbjct: 6 FDYIIIGAGSAGNVLAARLTEDADVSVLLLEAGG--PDYRLDFRTQMPAALAYPLQGRRY 63
Query: 84 DWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 64 NWAYLTEPEPHM----NNRRMECGRGKGLGG 90
>sp|Q13NG7|BETA_BURXL Choline dehydrogenase OS=Burkholderia xenovorans (strain LB400)
GN=betA PE=3 SV=1
Length = 561
Score = 66.2 bits (160), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 42/94 (44%), Positives = 57/94 (60%), Gaps = 12/94 (12%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLK 80
+ ++D+IIVG GSAG VLA+RL+E+ D VLL+EAGG P+ +++P + L
Sbjct: 3 ANEYDYIIVGAGSAGNVLASRLAEDADVTVLLLEAGG--PDYRFDFRTQMPAALAYPLQG 60
Query: 81 SRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
R +WAY T P+ M NR RGKGLGG
Sbjct: 61 RRYNWAYETDPEPHM----NNRRMECGRGKGLGG 90
>sp|Q6UPE0|CHDH_RAT Choline dehydrogenase, mitochondrial OS=Rattus norvegicus GN=Chdh
PE=1 SV=1
Length = 599
Score = 66.2 bits (160), Expect = 6e-11, Method: Composition-based stats.
Identities = 42/107 (39%), Positives = 56/107 (52%), Gaps = 17/107 (15%)
Query: 19 VSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYW--- 75
V++A ++ FI+VG GSAG VLANRL+E+ + RVLL+EAG W
Sbjct: 35 VASAASGGKDEYTFIVVGAGSAGCVLANRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKIH 94
Query: 76 ------FNLLKSRQDWAYRT--QPDNRMFFGLENRVNHWPRGKGLGG 114
NL + +W Y T QP GL+ RV +WPRG+ GG
Sbjct: 95 MPAALVANLCDDKYNWYYHTEAQP------GLDGRVLYWPRGRVWGG 135
>sp|B4EX94|BETA_PROMH Choline dehydrogenase OS=Proteus mirabilis (strain HI4320) GN=betA
PE=3 SV=1
Length = 555
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 12/91 (13%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSRQ 83
+D+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P + L R
Sbjct: 3 YDYIIIGAGSAGNVLATRLTEDPDVTVLLLEAGG--PDYRFDFRTQMPAALAYPLQGRRY 60
Query: 84 DWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 61 NWAYETEPEPHM----NNRRMECGRGKGLGG 87
>sp|B5Z1R0|BETA_ECO5E Choline dehydrogenase OS=Escherichia coli O157:H7 (strain EC4115 /
EHEC) GN=betA PE=3 SV=1
Length = 562
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|Q8X6C6|BETA_ECO57 Choline dehydrogenase OS=Escherichia coli O157:H7 GN=betA PE=3 SV=1
Length = 562
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|Q0T7N0|BETA_SHIF8 Choline dehydrogenase OS=Shigella flexneri serotype 5b (strain
8401) GN=betA PE=3 SV=1
Length = 556
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|B6I074|BETA_ECOSE Choline dehydrogenase OS=Escherichia coli (strain SE11) GN=betA
PE=3 SV=1
Length = 556
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|A7ZWV4|BETA_ECOHS Choline dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betA
PE=3 SV=1
Length = 556
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|B7M2V5|BETA_ECO8A Choline dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betA
PE=3 SV=1
Length = 556
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|B7L439|BETA_ECO55 Choline dehydrogenase OS=Escherichia coli (strain 55989 / EAEC)
GN=betA PE=3 SV=1
Length = 556
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|A7ZI50|BETA_ECO24 Choline dehydrogenase OS=Escherichia coli O139:H28 (strain E24377A
/ ETEC) GN=betA PE=3 SV=1
Length = 556
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|P17444|BETA_ECOLI Choline dehydrogenase OS=Escherichia coli (strain K12) GN=betA PE=1
SV=1
Length = 556
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|B1J0W6|BETA_ECOLC Choline dehydrogenase OS=Escherichia coli (strain ATCC 8739 / DSM
1576 / Crooks) GN=betA PE=3 SV=1
Length = 556
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|B1XE52|BETA_ECODH Choline dehydrogenase OS=Escherichia coli (strain K12 / DH10B)
GN=betA PE=3 SV=1
Length = 556
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTSVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|Q1RFM3|BETA_ECOUT Choline dehydrogenase OS=Escherichia coli (strain UTI89 / UPEC)
GN=betA PE=3 SV=2
Length = 562
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|B7MCD0|BETA_ECO45 Choline dehydrogenase OS=Escherichia coli O45:K1 (strain S88 /
ExPEC) GN=betA PE=3 SV=1
Length = 562
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|B7N8L3|BETA_ECOLU Choline dehydrogenase OS=Escherichia coli O17:K52:H18 (strain
UMN026 / ExPEC) GN=betA PE=3 SV=1
Length = 556
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|B1LIJ7|BETA_ECOSM Choline dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC)
GN=betA PE=3 SV=1
Length = 562
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|B7UJG4|BETA_ECO27 Choline dehydrogenase OS=Escherichia coli O127:H6 (strain E2348/69
/ EPEC) GN=betA PE=3 SV=1
Length = 556
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|Q0TKW1|BETA_ECOL5 Choline dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 /
UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|Q8FKI9|BETA_ECOL6 Choline dehydrogenase OS=Escherichia coli O6:H1 (strain CFT073 /
ATCC 700928 / UPEC) GN=betA PE=3 SV=2
Length = 556
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ + VLL+EAGG P+ +++P F L R
Sbjct: 2 QFDYIIIGAGSAGNVLATRLTEDPNTTVLLLEAGG--PDYRFDFRTQMPAALAFPLQGKR 59
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T+P+ M NR RGKGLGG
Sbjct: 60 YNWAYETEPEPFM----NNRRMECGRGKGLGG 87
>sp|Q9L4K0|BETA2_CHRSD Choline dehydrogenase OS=Chromohalobacter salexigens (strain DSM
3043 / ATCC BAA-138 / NCIMB 13768) GN=betA PE=1 SV=1
Length = 558
Score = 65.1 bits (157), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 56/92 (60%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II+G GSAG VLA RL+E+ D VLL+EAGG P+ +++P + L R
Sbjct: 6 EFDYIIIGAGSAGNVLATRLTEDSDVSVLLLEAGG--PDYRFDFRTQMPAALAYPLQGKR 63
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WA+ T P+ M +NR RGKGLGG
Sbjct: 64 YNWAFETDPEPHM----DNRRMECGRGKGLGG 91
>sp|Q8BJ64|CHDH_MOUSE Choline dehydrogenase, mitochondrial OS=Mus musculus GN=Chdh PE=1
SV=1
Length = 596
Score = 65.1 bits (157), Expect = 1e-10, Method: Composition-based stats.
Identities = 39/106 (36%), Positives = 57/106 (53%), Gaps = 17/106 (16%)
Query: 18 VVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYW-- 75
V S +D ++ F++VG GSAG VLA+RL+E+ + RVLL+EAG W
Sbjct: 35 VASVGKD----EYTFVVVGAGSAGCVLASRLTEDPNHRVLLLEAGPKDLLMGSKRLQWKI 90
Query: 76 -------FNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
NL + +W Y T+P G+++RV +WPRG+ GG
Sbjct: 91 HMPAALVSNLCDDKYNWYYHTEPQP----GMDSRVLYWPRGRVWGG 132
>sp|B4EHJ2|BETA_BURCJ Choline dehydrogenase OS=Burkholderia cepacia (strain J2315 / LMG
16656) GN=betA PE=3 SV=1
Length = 566
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 41/92 (44%), Positives = 55/92 (59%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
++D+II G GSAG VLA RL+E+ D VLL+EAGG P+ +++P + L R
Sbjct: 5 EYDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGG--PDYRFDFRTQMPAALAYPLQGRR 62
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T P+ M +NR RGKGLGG
Sbjct: 63 YNWAYETDPEPHM----DNRRMECGRGKGLGG 90
>sp|Q2T6D0|BETA_BURTA Choline dehydrogenase OS=Burkholderia thailandensis (strain E264 /
ATCC 700388 / DSM 13276 / CIP 106301) GN=betA PE=3 SV=1
Length = 565
Score = 64.7 bits (156), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 42/92 (45%), Positives = 54/92 (58%), Gaps = 12/92 (13%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-----ASELPGYW-FNLLKSR 82
+FD+II G GSAG VLA RL+E+ D VLL+EAGG P+ +++P + L R
Sbjct: 5 EFDYIICGAGSAGNVLATRLTEDPDVTVLLLEAGG--PDYRFDFRTQMPAALAYPLQGRR 62
Query: 83 QDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+WAY T P+ M NR RGKGLGG
Sbjct: 63 YNWAYETDPEPHM----NNRRMECGRGKGLGG 90
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.139 0.427
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,157,917
Number of Sequences: 539616
Number of extensions: 2378152
Number of successful extensions: 7360
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 6998
Number of HSP's gapped (non-prelim): 222
length of query: 146
length of database: 191,569,459
effective HSP length: 106
effective length of query: 40
effective length of database: 134,370,163
effective search space: 5374806520
effective search space used: 5374806520
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)