Query psy3408
Match_columns 146
No_of_seqs 156 out of 1721
Neff 8.0
Searched_HMMs 46136
Date Sat Aug 17 00:14:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3408.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3408hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1238|consensus 99.9 6.3E-27 1.4E-31 197.0 7.4 111 26-136 54-165 (623)
2 PF00732 GMC_oxred_N: GMC oxid 99.9 2.1E-22 4.6E-27 157.5 6.0 101 30-134 1-103 (296)
3 PRK02106 choline dehydrogenase 99.8 3.1E-21 6.8E-26 163.6 9.3 103 27-133 3-110 (560)
4 COG2303 BetA Choline dehydroge 99.8 1.1E-20 2.4E-25 160.0 8.2 103 26-133 4-109 (542)
5 TIGR01810 betA choline dehydro 99.8 1.8E-20 3.9E-25 158.0 8.5 99 31-133 1-104 (532)
6 PLN02785 Protein HOTHEAD 99.8 2.9E-19 6.4E-24 152.4 9.8 99 27-132 53-152 (587)
7 TIGR02462 pyranose_ox pyranose 98.9 2.5E-09 5.3E-14 91.0 7.8 36 30-66 1-36 (544)
8 COG2081 Predicted flavoprotein 98.8 2.6E-09 5.6E-14 86.9 4.3 86 27-133 1-87 (408)
9 COG0644 FixC Dehydrogenases (f 98.8 1.2E-08 2.5E-13 83.5 5.3 38 28-66 2-39 (396)
10 PRK07364 2-octaprenyl-6-methox 98.7 3.6E-08 7.7E-13 80.4 5.5 48 17-65 6-53 (415)
11 PRK10157 putative oxidoreducta 98.6 4.5E-08 9.7E-13 81.0 5.4 38 28-66 4-41 (428)
12 PRK10015 oxidoreductase; Provi 98.6 5.3E-08 1.2E-12 80.6 5.4 37 28-65 4-40 (429)
13 PLN00093 geranylgeranyl diphos 98.6 4E-08 8.7E-13 81.9 4.4 39 25-64 35-73 (450)
14 COG0562 Glf UDP-galactopyranos 98.6 7.1E-08 1.5E-12 76.8 4.6 60 29-89 1-72 (374)
15 PF01946 Thi4: Thi4 family; PD 98.6 1.2E-07 2.7E-12 71.9 5.4 38 28-66 16-53 (230)
16 PF01494 FAD_binding_3: FAD bi 98.5 1.5E-07 3.3E-12 74.0 4.9 36 29-65 1-36 (356)
17 TIGR02032 GG-red-SF geranylger 98.5 2E-07 4.3E-12 71.9 5.0 35 30-65 1-35 (295)
18 TIGR00292 thiazole biosynthesi 98.5 2.4E-07 5.1E-12 72.0 5.2 37 28-65 20-56 (254)
19 PF13450 NAD_binding_8: NAD(P) 98.5 2.9E-07 6.2E-12 57.6 4.6 32 34-66 1-32 (68)
20 PF03486 HI0933_like: HI0933-l 98.5 1.8E-07 3.9E-12 77.2 4.7 36 30-66 1-36 (409)
21 COG1233 Phytoene dehydrogenase 98.5 2.1E-07 4.7E-12 78.2 5.2 38 28-66 2-39 (487)
22 PRK09126 hypothetical protein; 98.5 2.2E-07 4.8E-12 75.2 5.1 36 28-64 2-37 (392)
23 TIGR02023 BchP-ChlP geranylger 98.4 2.2E-07 4.8E-12 75.6 4.8 32 30-62 1-32 (388)
24 PRK04176 ribulose-1,5-biphosph 98.4 3.3E-07 7.1E-12 71.3 5.2 37 28-65 24-60 (257)
25 PRK11259 solA N-methyltryptoph 98.4 3.4E-07 7.4E-12 73.6 5.0 36 28-64 2-37 (376)
26 PRK07608 ubiquinone biosynthes 98.4 3.8E-07 8.2E-12 73.7 5.2 38 27-65 3-40 (388)
27 PRK08013 oxidoreductase; Provi 98.4 4E-07 8.6E-12 74.4 5.1 37 28-65 2-38 (400)
28 PRK08010 pyridine nucleotide-d 98.4 4.7E-07 1E-11 74.9 5.0 36 28-64 2-37 (441)
29 PRK06481 fumarate reductase fl 98.4 1.3E-06 2.9E-11 73.8 7.6 37 28-65 60-96 (506)
30 PTZ00363 rab-GDP dissociation 98.4 4.8E-07 1E-11 75.4 4.7 39 27-66 2-40 (443)
31 PRK07045 putative monooxygenas 98.3 6.3E-07 1.4E-11 72.7 5.1 37 28-65 4-40 (388)
32 PRK08274 tricarballylate dehyd 98.3 6.4E-07 1.4E-11 74.6 5.2 37 27-64 2-38 (466)
33 PRK08020 ubiF 2-octaprenyl-3-m 98.3 5.2E-07 1.1E-11 73.1 4.5 37 27-64 3-39 (391)
34 PRK12266 glpD glycerol-3-phosp 98.3 6.3E-07 1.4E-11 75.8 5.2 37 27-64 4-40 (508)
35 PRK07251 pyridine nucleotide-d 98.3 6.3E-07 1.4E-11 74.1 5.1 36 28-64 2-37 (438)
36 PRK13369 glycerol-3-phosphate 98.3 6.6E-07 1.4E-11 75.4 5.3 37 27-64 4-40 (502)
37 PRK08773 2-octaprenyl-3-methyl 98.3 6.7E-07 1.4E-11 72.7 5.1 37 27-64 4-40 (392)
38 PF01266 DAO: FAD dependent ox 98.3 6.2E-07 1.4E-11 70.6 4.8 33 31-64 1-33 (358)
39 PRK07494 2-octaprenyl-6-methox 98.3 6.8E-07 1.5E-11 72.4 5.1 38 27-65 5-42 (388)
40 TIGR02028 ChlP geranylgeranyl 98.3 6.3E-07 1.4E-11 73.5 4.9 34 30-64 1-34 (398)
41 TIGR01377 soxA_mon sarcosine o 98.3 6.5E-07 1.4E-11 72.0 4.8 34 30-64 1-34 (380)
42 COG1635 THI4 Ribulose 1,5-bisp 98.3 7.4E-07 1.6E-11 67.9 4.7 38 28-66 29-66 (262)
43 PRK06116 glutathione reductase 98.3 7.6E-07 1.6E-11 73.9 5.1 34 28-62 3-36 (450)
44 PRK08849 2-octaprenyl-3-methyl 98.3 8E-07 1.7E-11 72.2 5.0 34 29-63 3-36 (384)
45 PRK06370 mercuric reductase; V 98.3 7.9E-07 1.7E-11 74.1 5.1 37 27-64 3-39 (463)
46 PRK05714 2-octaprenyl-3-methyl 98.3 6.6E-07 1.4E-11 73.0 4.5 34 29-63 2-35 (405)
47 TIGR01988 Ubi-OHases Ubiquinon 98.3 8.4E-07 1.8E-11 71.3 4.8 34 31-65 1-34 (385)
48 TIGR01421 gluta_reduc_1 glutat 98.3 8.1E-07 1.7E-11 74.0 4.7 35 28-63 1-35 (450)
49 PF00890 FAD_binding_2: FAD bi 98.3 9.1E-07 2E-11 72.3 4.9 34 31-65 1-34 (417)
50 PF12831 FAD_oxidored: FAD dep 98.3 8.7E-07 1.9E-11 73.4 4.8 35 31-66 1-35 (428)
51 PRK06115 dihydrolipoamide dehy 98.3 9.9E-07 2.1E-11 73.7 5.1 34 28-62 2-35 (466)
52 TIGR01373 soxB sarcosine oxida 98.3 1.5E-06 3.2E-11 70.9 6.0 39 25-63 26-65 (407)
53 PLN02985 squalene monooxygenas 98.3 1.3E-06 2.8E-11 74.1 5.7 41 23-64 37-77 (514)
54 TIGR02730 carot_isom carotene 98.3 1.1E-06 2.4E-11 73.8 5.2 36 30-66 1-36 (493)
55 PRK12409 D-amino acid dehydrog 98.3 1E-06 2.2E-11 71.9 4.8 34 30-64 2-35 (410)
56 PRK06185 hypothetical protein; 98.3 1.1E-06 2.4E-11 71.6 4.9 37 27-64 4-40 (407)
57 TIGR03364 HpnW_proposed FAD de 98.3 1.1E-06 2.5E-11 70.5 4.9 34 30-64 1-34 (365)
58 PRK08244 hypothetical protein; 98.3 1.3E-06 2.7E-11 73.3 5.3 36 29-65 2-37 (493)
59 TIGR01424 gluta_reduc_2 glutat 98.3 1E-06 2.2E-11 73.2 4.7 33 29-62 2-34 (446)
60 PRK05249 soluble pyridine nucl 98.3 1.3E-06 2.8E-11 72.6 5.2 37 28-65 4-40 (461)
61 PRK05976 dihydrolipoamide dehy 98.3 1.2E-06 2.7E-11 73.1 5.0 36 27-63 2-37 (472)
62 PRK06184 hypothetical protein; 98.3 1.4E-06 3.1E-11 73.2 5.4 37 28-65 2-38 (502)
63 PRK07208 hypothetical protein; 98.3 1.8E-06 3.9E-11 72.0 5.9 39 27-66 2-40 (479)
64 TIGR03329 Phn_aa_oxid putative 98.2 1.8E-06 3.9E-11 72.0 5.7 38 27-64 22-60 (460)
65 TIGR01292 TRX_reduct thioredox 98.2 1.5E-06 3.2E-11 67.4 4.8 33 30-63 1-33 (300)
66 PRK06416 dihydrolipoamide dehy 98.2 1.5E-06 3.2E-11 72.3 5.1 35 28-63 3-37 (462)
67 TIGR01790 carotene-cycl lycope 98.2 1.5E-06 3.2E-11 70.4 4.9 34 31-65 1-34 (388)
68 PRK06292 dihydrolipoamide dehy 98.2 1.5E-06 3.3E-11 72.1 5.1 34 28-62 2-35 (460)
69 PRK07121 hypothetical protein; 98.2 1.7E-06 3.6E-11 72.7 5.2 37 28-65 19-55 (492)
70 PLN02676 polyamine oxidase 98.2 3.2E-06 7E-11 71.2 6.9 38 28-66 25-63 (487)
71 PLN02463 lycopene beta cyclase 98.2 1.5E-06 3.4E-11 72.5 4.9 37 27-64 26-62 (447)
72 PRK11728 hydroxyglutarate oxid 98.2 1.9E-06 4.1E-11 70.2 5.2 37 29-65 2-39 (393)
73 TIGR01984 UbiH 2-polyprenyl-6- 98.2 1.6E-06 3.4E-11 70.0 4.6 34 31-65 1-35 (382)
74 KOG0029|consensus 98.2 2E-06 4.4E-11 72.7 5.4 41 25-66 11-51 (501)
75 PRK07190 hypothetical protein; 98.2 1.9E-06 4.1E-11 72.6 5.2 37 28-65 4-40 (487)
76 PRK07333 2-octaprenyl-6-methox 98.2 1.6E-06 3.4E-11 70.5 4.5 36 29-64 1-37 (403)
77 PRK08850 2-octaprenyl-6-methox 98.2 1.6E-06 3.5E-11 70.8 4.7 34 28-62 3-36 (405)
78 PRK11101 glpA sn-glycerol-3-ph 98.2 1.8E-06 4E-11 73.6 5.0 36 28-64 5-40 (546)
79 PRK08243 4-hydroxybenzoate 3-m 98.2 1.9E-06 4.2E-11 70.1 4.9 35 29-64 2-36 (392)
80 TIGR01989 COQ6 Ubiquinone bios 98.2 1.7E-06 3.8E-11 71.6 4.6 33 30-63 1-37 (437)
81 PRK07818 dihydrolipoamide dehy 98.2 2.1E-06 4.5E-11 71.6 5.1 35 28-63 3-37 (466)
82 PRK05192 tRNA uridine 5-carbox 98.2 1.9E-06 4.2E-11 74.2 4.9 36 27-63 2-37 (618)
83 PRK05732 2-octaprenyl-6-methox 98.2 1.9E-06 4.2E-11 69.6 4.7 35 28-62 2-38 (395)
84 TIGR03143 AhpF_homolog putativ 98.2 2.1E-06 4.6E-11 73.3 5.2 36 28-64 3-38 (555)
85 PRK06467 dihydrolipoamide dehy 98.2 2.4E-06 5.2E-11 71.5 5.4 37 28-65 3-39 (471)
86 TIGR02360 pbenz_hydroxyl 4-hyd 98.2 2.1E-06 4.7E-11 70.0 5.0 35 29-64 2-36 (390)
87 TIGR01350 lipoamide_DH dihydro 98.2 2.2E-06 4.7E-11 71.2 5.1 32 29-61 1-32 (461)
88 PF05834 Lycopene_cycl: Lycope 98.2 1.8E-06 3.8E-11 70.3 4.4 34 31-65 1-36 (374)
89 TIGR00031 UDP-GALP_mutase UDP- 98.2 2.4E-06 5.3E-11 69.9 5.1 36 30-66 2-37 (377)
90 KOG1298|consensus 98.2 1.9E-06 4.1E-11 70.4 4.4 39 26-65 42-80 (509)
91 PRK06847 hypothetical protein; 98.2 2.7E-06 5.8E-11 68.5 5.3 37 28-65 3-39 (375)
92 PLN02464 glycerol-3-phosphate 98.2 2.1E-06 4.6E-11 74.4 5.0 36 28-64 70-105 (627)
93 TIGR02053 MerA mercuric reduct 98.2 2.2E-06 4.7E-11 71.4 4.9 34 30-64 1-34 (463)
94 COG0654 UbiH 2-polyprenyl-6-me 98.2 2E-06 4.4E-11 70.1 4.6 33 29-62 2-34 (387)
95 PRK06834 hypothetical protein; 98.2 2.7E-06 5.9E-11 71.6 5.3 36 28-64 2-37 (488)
96 TIGR02733 desat_CrtD C-3',4' d 98.2 2.7E-06 5.8E-11 71.3 5.2 36 30-66 2-37 (492)
97 PRK06183 mhpA 3-(3-hydroxyphen 98.2 3.5E-06 7.6E-11 71.5 5.8 38 27-65 8-45 (538)
98 PRK12837 3-ketosteroid-delta-1 98.2 2.9E-06 6.2E-11 71.9 5.2 37 27-65 5-41 (513)
99 PLN02268 probable polyamine ox 98.2 3E-06 6.5E-11 69.8 5.2 36 30-66 1-36 (435)
100 PLN02661 Putative thiazole syn 98.2 2.9E-06 6.2E-11 68.8 4.9 37 29-65 92-128 (357)
101 COG0665 DadA Glycine/D-amino a 98.2 3E-06 6.5E-11 68.2 5.0 38 27-65 2-39 (387)
102 PRK07236 hypothetical protein; 98.1 3.4E-06 7.4E-11 68.5 5.3 37 27-64 4-40 (386)
103 COG0492 TrxB Thioredoxin reduc 98.1 3E-06 6.4E-11 67.6 4.8 35 28-63 2-37 (305)
104 PTZ00367 squalene epoxidase; P 98.1 3E-06 6.4E-11 72.7 5.1 38 25-63 29-66 (567)
105 PRK06753 hypothetical protein; 98.1 3.1E-06 6.8E-11 68.1 4.8 34 31-65 2-35 (373)
106 PRK07804 L-aspartate oxidase; 98.1 3.6E-06 7.8E-11 71.7 5.4 39 26-65 13-51 (541)
107 PLN02576 protoporphyrinogen ox 98.1 4.1E-06 8.9E-11 70.1 5.6 40 27-66 10-49 (496)
108 PRK11883 protoporphyrinogen ox 98.1 3.6E-06 7.8E-11 69.2 5.2 35 31-66 2-38 (451)
109 PRK14694 putative mercuric red 98.1 3.4E-06 7.3E-11 70.5 5.0 35 28-63 5-39 (468)
110 PRK06617 2-octaprenyl-6-methox 98.1 2.8E-06 6E-11 68.9 4.4 33 30-63 2-34 (374)
111 PRK08163 salicylate hydroxylas 98.1 3.8E-06 8.2E-11 68.1 5.2 37 28-65 3-39 (396)
112 PRK07233 hypothetical protein; 98.1 3.8E-06 8.2E-11 68.5 5.2 35 31-66 1-35 (434)
113 PRK08132 FAD-dependent oxidore 98.1 4.5E-06 9.8E-11 71.0 5.8 38 27-65 21-58 (547)
114 PRK13748 putative mercuric red 98.1 3.5E-06 7.7E-11 71.7 5.0 35 28-63 97-131 (561)
115 PRK12834 putative FAD-binding 98.1 3.8E-06 8.2E-11 71.6 5.1 35 28-63 3-37 (549)
116 TIGR01813 flavo_cyto_c flavocy 98.1 4.7E-06 1E-10 68.8 5.6 34 31-65 1-35 (439)
117 PRK07588 hypothetical protein; 98.1 3.7E-06 8.1E-11 68.3 4.8 34 31-65 2-35 (391)
118 PTZ00383 malate:quinone oxidor 98.1 4.4E-06 9.6E-11 70.6 5.4 38 27-64 43-81 (497)
119 PLN02697 lycopene epsilon cycl 98.1 3.4E-06 7.4E-11 71.8 4.7 36 27-63 106-141 (529)
120 PRK05257 malate:quinone oxidor 98.1 3.9E-06 8.3E-11 70.9 5.0 39 27-65 3-42 (494)
121 TIGR01320 mal_quin_oxido malat 98.1 3.8E-06 8.2E-11 70.8 4.9 35 30-64 1-36 (483)
122 PRK06996 hypothetical protein; 98.1 3.8E-06 8.2E-11 68.6 4.8 39 26-64 8-49 (398)
123 PTZ00058 glutathione reductase 98.1 3.9E-06 8.5E-11 71.9 4.9 36 27-63 46-81 (561)
124 PRK06126 hypothetical protein; 98.1 4.8E-06 1E-10 70.7 5.4 38 27-65 5-42 (545)
125 PLN02507 glutathione reductase 98.1 4.4E-06 9.6E-11 70.5 5.1 34 27-61 23-56 (499)
126 TIGR02734 crtI_fam phytoene de 98.1 4.2E-06 9.1E-11 70.2 4.7 34 32-66 1-34 (502)
127 PRK06327 dihydrolipoamide dehy 98.1 4.6E-06 9.9E-11 69.9 4.8 33 28-61 3-35 (475)
128 PRK11445 putative oxidoreducta 98.1 4.8E-06 1E-10 67.1 4.7 34 29-64 1-34 (351)
129 PRK12835 3-ketosteroid-delta-1 98.1 5.2E-06 1.1E-10 71.4 5.0 39 26-65 8-46 (584)
130 TIGR01789 lycopene_cycl lycope 98.1 5.6E-06 1.2E-10 67.4 4.8 35 31-65 1-36 (370)
131 PRK12845 3-ketosteroid-delta-1 98.1 9E-06 2E-10 69.7 6.2 37 27-65 14-50 (564)
132 PRK12842 putative succinate de 98.1 6.7E-06 1.5E-10 70.5 5.4 37 28-65 8-44 (574)
133 TIGR00562 proto_IX_ox protopor 98.0 6.2E-06 1.3E-10 68.2 5.0 38 29-66 2-42 (462)
134 PTZ00052 thioredoxin reductase 98.0 5.4E-06 1.2E-10 70.0 4.6 32 29-61 5-36 (499)
135 PLN02172 flavin-containing mon 98.0 8.5E-06 1.9E-10 68.3 5.8 40 26-66 7-46 (461)
136 PRK01747 mnmC bifunctional tRN 98.0 5.7E-06 1.2E-10 72.0 4.8 35 29-64 260-294 (662)
137 PRK00711 D-amino acid dehydrog 98.0 6.3E-06 1.4E-10 67.3 4.7 33 31-64 2-34 (416)
138 PTZ00139 Succinate dehydrogena 98.0 8.6E-06 1.9E-10 70.5 5.7 38 27-65 27-64 (617)
139 PRK07538 hypothetical protein; 98.0 7.4E-06 1.6E-10 67.2 4.9 35 30-65 1-35 (413)
140 PRK08641 sdhA succinate dehydr 98.0 7.4E-06 1.6E-10 70.5 4.9 37 28-65 2-38 (589)
141 PF13738 Pyr_redox_3: Pyridine 98.0 8.9E-06 1.9E-10 59.9 4.7 33 33-66 1-34 (203)
142 PRK14727 putative mercuric red 98.0 1E-05 2.2E-10 67.9 5.5 38 26-64 13-50 (479)
143 PRK07803 sdhA succinate dehydr 98.0 7.5E-06 1.6E-10 71.0 4.8 37 28-65 7-43 (626)
144 PRK06452 sdhA succinate dehydr 98.0 7.6E-06 1.6E-10 70.1 4.8 36 28-64 4-39 (566)
145 PRK13339 malate:quinone oxidor 98.0 7.9E-06 1.7E-10 69.1 4.7 35 27-61 4-39 (497)
146 PRK10262 thioredoxin reductase 98.0 9.5E-06 2E-10 64.3 4.9 35 27-62 4-38 (321)
147 PRK08958 sdhA succinate dehydr 98.0 8.7E-06 1.9E-10 70.1 5.0 37 28-65 6-42 (588)
148 PRK12844 3-ketosteroid-delta-1 98.0 9.2E-06 2E-10 69.5 5.1 37 28-65 5-41 (557)
149 PLN02546 glutathione reductase 98.0 8E-06 1.7E-10 70.0 4.7 33 28-61 78-110 (558)
150 PRK09078 sdhA succinate dehydr 98.0 8.6E-06 1.9E-10 70.3 4.9 36 28-64 11-46 (598)
151 COG3573 Predicted oxidoreducta 98.0 9.1E-06 2E-10 65.7 4.6 38 27-65 3-40 (552)
152 PRK06175 L-aspartate oxidase; 98.0 8.3E-06 1.8E-10 67.7 4.5 36 28-65 3-38 (433)
153 PRK05329 anaerobic glycerol-3- 98.0 1E-05 2.3E-10 67.1 5.0 35 28-63 1-35 (422)
154 PRK08401 L-aspartate oxidase; 98.0 9.5E-06 2.1E-10 67.9 4.8 34 30-64 2-35 (466)
155 PRK07057 sdhA succinate dehydr 98.0 9.4E-06 2E-10 69.9 4.8 36 28-64 11-46 (591)
156 PRK08294 phenol 2-monooxygenas 98.0 1.2E-05 2.6E-10 69.8 5.5 39 27-65 30-68 (634)
157 PRK05945 sdhA succinate dehydr 98.0 1E-05 2.2E-10 69.5 4.9 37 28-64 2-39 (575)
158 PLN00128 Succinate dehydrogena 98.0 9.8E-06 2.1E-10 70.4 4.8 37 28-65 49-85 (635)
159 TIGR01812 sdhA_frdA_Gneg succi 98.0 9.7E-06 2.1E-10 69.3 4.7 33 31-64 1-33 (566)
160 PLN02815 L-aspartate oxidase 98.0 1.1E-05 2.5E-10 69.5 5.0 40 24-65 24-63 (594)
161 COG2072 TrkA Predicted flavopr 97.9 1.7E-05 3.7E-10 66.2 5.8 41 25-66 4-45 (443)
162 COG1249 Lpd Pyruvate/2-oxoglut 97.9 1.2E-05 2.5E-10 67.4 4.9 37 27-64 2-38 (454)
163 PRK08275 putative oxidoreducta 97.9 1.2E-05 2.5E-10 68.8 5.0 37 28-64 8-45 (554)
164 PLN02927 antheraxanthin epoxid 97.9 1.6E-05 3.6E-10 69.3 5.6 36 27-63 79-114 (668)
165 PRK05868 hypothetical protein; 97.9 1.4E-05 3E-10 65.0 4.9 34 31-65 3-36 (372)
166 PRK07843 3-ketosteroid-delta-1 97.9 1.6E-05 3.4E-10 68.0 5.4 38 27-65 5-42 (557)
167 PF07992 Pyr_redox_2: Pyridine 97.9 1.4E-05 3.1E-10 58.5 4.5 33 31-64 1-33 (201)
168 PRK06069 sdhA succinate dehydr 97.9 1.2E-05 2.7E-10 68.9 4.8 36 29-65 5-43 (577)
169 COG1231 Monoamine oxidase [Ami 97.9 1.5E-05 3.3E-10 66.0 5.0 39 27-66 5-43 (450)
170 PRK06134 putative FAD-binding 97.9 1.8E-05 3.8E-10 68.1 5.6 40 25-65 8-47 (581)
171 PRK08626 fumarate reductase fl 97.9 1.3E-05 2.8E-10 69.9 4.7 37 28-65 4-40 (657)
172 PRK06854 adenylylsulfate reduc 97.9 1.4E-05 3E-10 69.1 4.8 37 28-64 10-47 (608)
173 PRK07573 sdhA succinate dehydr 97.9 1.6E-05 3.4E-10 69.2 5.2 36 28-64 34-69 (640)
174 COG0579 Predicted dehydrogenas 97.9 1.9E-05 4.1E-10 65.6 5.4 40 27-66 1-41 (429)
175 TIGR01423 trypano_reduc trypan 97.9 1.6E-05 3.5E-10 67.0 4.8 35 28-62 2-36 (486)
176 COG3380 Predicted NAD/FAD-depe 97.9 1.8E-05 3.9E-10 62.1 4.6 35 30-65 2-36 (331)
177 TIGR02731 phytoene_desat phyto 97.9 2E-05 4.3E-10 65.3 5.2 35 31-66 1-35 (453)
178 PRK12416 protoporphyrinogen ox 97.9 1.4E-05 3E-10 66.4 4.0 36 31-66 3-43 (463)
179 TIGR01438 TGR thioredoxin and 97.9 1.8E-05 3.8E-10 66.7 4.7 33 29-62 2-34 (484)
180 PRK06475 salicylate hydroxylas 97.9 2.1E-05 4.6E-10 64.2 5.0 35 30-65 3-37 (400)
181 PRK06263 sdhA succinate dehydr 97.9 1.7E-05 3.8E-10 67.5 4.6 35 28-64 6-40 (543)
182 PLN02568 polyamine oxidase 97.9 2.5E-05 5.4E-10 66.7 5.5 38 28-66 4-46 (539)
183 PRK07395 L-aspartate oxidase; 97.9 2.1E-05 4.5E-10 67.4 4.9 37 27-65 7-43 (553)
184 PTZ00153 lipoamide dehydrogena 97.9 2E-05 4.4E-10 68.7 4.9 33 29-62 116-148 (659)
185 PRK15317 alkyl hydroperoxide r 97.8 3.9E-05 8.5E-10 65.0 6.0 34 27-61 209-242 (517)
186 TIGR00551 nadB L-aspartate oxi 97.8 2.5E-05 5.5E-10 65.7 4.8 35 29-65 2-36 (488)
187 COG3075 GlpB Anaerobic glycero 97.8 2.7E-05 5.8E-10 62.7 4.6 36 28-64 1-36 (421)
188 PRK05335 tRNA (uracil-5-)-meth 97.8 2.9E-05 6.3E-10 64.5 4.9 35 30-65 3-37 (436)
189 PRK12839 hypothetical protein; 97.8 3.5E-05 7.6E-10 66.2 5.4 37 28-65 7-43 (572)
190 TIGR01372 soxA sarcosine oxida 97.8 3.6E-05 7.8E-10 69.9 5.5 37 28-65 162-198 (985)
191 PRK09231 fumarate reductase fl 97.8 3.8E-05 8.3E-10 66.1 5.4 38 28-65 3-41 (582)
192 TIGR02061 aprA adenosine phosp 97.8 2.9E-05 6.3E-10 67.3 4.7 34 31-65 1-38 (614)
193 TIGR01176 fum_red_Fp fumarate 97.8 3.9E-05 8.4E-10 66.1 5.4 37 29-65 3-40 (580)
194 COG3349 Uncharacterized conser 97.8 3.2E-05 7E-10 64.9 4.7 35 31-66 2-36 (485)
195 TIGR03315 Se_ygfK putative sel 97.8 4.3E-05 9.3E-10 69.4 5.7 38 27-65 535-572 (1012)
196 PRK13800 putative oxidoreducta 97.8 3.7E-05 7.9E-10 69.2 5.2 36 28-64 12-47 (897)
197 COG0578 GlpA Glycerol-3-phosph 97.8 3.8E-05 8.2E-10 65.3 4.9 38 27-65 10-47 (532)
198 PTZ00306 NADH-dependent fumara 97.8 3.9E-05 8.4E-10 70.8 5.3 37 28-65 408-444 (1167)
199 TIGR03219 salicylate_mono sali 97.7 4.2E-05 9.1E-10 62.7 4.9 34 31-65 2-36 (414)
200 PRK08071 L-aspartate oxidase; 97.7 4.5E-05 9.8E-10 64.6 5.1 35 29-65 3-37 (510)
201 TIGR03140 AhpF alkyl hydropero 97.7 4.1E-05 8.8E-10 64.9 4.8 34 27-61 210-243 (515)
202 PRK08205 sdhA succinate dehydr 97.7 4.2E-05 9.2E-10 65.8 4.9 35 28-64 4-38 (583)
203 PRK09077 L-aspartate oxidase; 97.7 4.2E-05 9.1E-10 65.2 4.8 36 28-65 7-42 (536)
204 KOG2820|consensus 97.7 4E-05 8.7E-10 61.7 4.4 38 27-65 5-42 (399)
205 PRK12843 putative FAD-binding 97.7 6.2E-05 1.3E-09 64.7 5.8 38 27-65 14-51 (578)
206 PRK12831 putative oxidoreducta 97.7 5.7E-05 1.2E-09 63.3 5.3 38 27-65 138-175 (464)
207 KOG2415|consensus 97.7 4.2E-05 9.1E-10 63.3 4.4 39 28-66 75-118 (621)
208 TIGR00275 flavoprotein, HI0933 97.7 3.4E-05 7.4E-10 63.4 3.5 33 33-66 1-33 (400)
209 TIGR03378 glycerol3P_GlpB glyc 97.7 6.1E-05 1.3E-09 62.5 4.8 34 30-64 1-34 (419)
210 PRK06912 acoL dihydrolipoamide 97.7 6.2E-05 1.4E-09 62.7 4.8 33 31-64 2-34 (458)
211 PF01134 GIDA: Glucose inhibit 97.6 5.5E-05 1.2E-09 62.2 4.2 28 31-59 1-28 (392)
212 PLN02852 ferredoxin-NADP+ redu 97.6 0.00011 2.4E-09 62.2 5.8 44 23-66 20-64 (491)
213 TIGR00137 gid_trmFO tRNA:m(5)U 97.6 8E-05 1.7E-09 62.0 4.8 33 31-64 2-34 (433)
214 COG1053 SdhA Succinate dehydro 97.6 8.8E-05 1.9E-09 63.7 5.1 38 27-65 4-41 (562)
215 KOG1399|consensus 97.6 7.2E-05 1.6E-09 62.6 4.5 39 28-67 5-43 (448)
216 TIGR02732 zeta_caro_desat caro 97.6 9.4E-05 2E-09 62.1 5.1 35 31-66 1-35 (474)
217 TIGR01316 gltA glutamate synth 97.6 0.00011 2.3E-09 61.3 5.4 38 27-65 131-168 (449)
218 PRK12779 putative bifunctional 97.6 9.2E-05 2E-09 67.0 5.1 38 28-66 305-342 (944)
219 PRK12810 gltD glutamate syntha 97.6 0.00012 2.7E-09 61.3 5.4 37 28-65 142-178 (471)
220 PLN02529 lysine-specific histo 97.6 0.00013 2.7E-09 64.5 5.5 38 28-66 159-196 (738)
221 PRK07846 mycothione reductase; 97.6 0.0001 2.2E-09 61.5 4.6 33 29-64 1-33 (451)
222 PLN02612 phytoene desaturase 97.6 0.00013 2.9E-09 62.6 5.4 37 28-65 92-128 (567)
223 KOG2614|consensus 97.5 0.00014 3E-09 59.8 4.9 36 29-65 2-37 (420)
224 PRK12769 putative oxidoreducta 97.5 0.00017 3.7E-09 62.8 5.8 37 28-65 326-362 (654)
225 PRK07512 L-aspartate oxidase; 97.5 9.9E-05 2.2E-09 62.6 4.2 34 28-64 8-41 (513)
226 PLN02328 lysine-specific histo 97.5 0.00016 3.5E-09 64.4 5.5 38 28-66 237-274 (808)
227 PRK12775 putative trifunctiona 97.5 0.00016 3.5E-09 65.9 5.6 37 28-65 429-465 (1006)
228 TIGR01811 sdhA_Bsu succinate d 97.5 0.00011 2.3E-09 63.7 4.2 31 32-63 1-31 (603)
229 PRK08255 salicylyl-CoA 5-hydro 97.5 0.00014 3E-09 64.5 5.0 35 31-65 2-37 (765)
230 PRK12778 putative bifunctional 97.5 0.00016 3.4E-09 64.0 5.1 37 28-65 430-466 (752)
231 PLN02487 zeta-carotene desatur 97.5 0.00022 4.8E-09 61.4 5.7 38 28-66 74-111 (569)
232 TIGR00136 gidA glucose-inhibit 97.5 0.00016 3.4E-09 62.6 4.8 34 30-64 1-34 (617)
233 KOG0685|consensus 97.5 0.00019 4.1E-09 60.0 5.1 40 28-67 20-59 (498)
234 PRK11749 dihydropyrimidine deh 97.5 0.00021 4.5E-09 59.6 5.4 38 27-65 138-175 (457)
235 PF00070 Pyr_redox: Pyridine n 97.5 0.00032 6.9E-09 44.6 5.1 34 32-66 2-35 (80)
236 TIGR03452 mycothione_red mycot 97.5 0.00017 3.6E-09 60.2 4.7 33 29-64 2-34 (452)
237 COG1232 HemY Protoporphyrinoge 97.4 0.0002 4.4E-09 59.8 5.0 35 31-66 2-38 (444)
238 PRK09853 putative selenate red 97.4 0.00023 5E-09 64.7 5.7 37 28-65 538-574 (1019)
239 KOG2665|consensus 97.4 0.00013 2.8E-09 58.6 3.3 44 22-65 41-85 (453)
240 PRK07845 flavoprotein disulfid 97.4 0.00022 4.8E-09 59.7 4.8 33 31-64 3-35 (466)
241 PF04820 Trp_halogenase: Trypt 97.4 0.00022 4.8E-09 59.7 4.7 43 31-74 1-49 (454)
242 COG1148 HdrA Heterodisulfide r 97.4 0.00042 9.2E-09 58.4 6.0 39 27-66 122-160 (622)
243 PRK13977 myosin-cross-reactive 97.4 0.00041 8.9E-09 59.6 6.2 38 29-66 22-62 (576)
244 PF00996 GDI: GDP dissociation 97.3 0.00032 7E-09 58.5 5.1 39 27-66 2-40 (438)
245 PRK12814 putative NADPH-depend 97.3 0.00044 9.4E-09 60.4 5.4 37 28-65 192-228 (652)
246 PRK12770 putative glutamate sy 97.3 0.00051 1.1E-08 55.3 5.1 37 29-66 18-54 (352)
247 TIGR01318 gltD_gamma_fam gluta 97.2 0.00053 1.1E-08 57.5 5.3 37 28-65 140-176 (467)
248 PLN03000 amine oxidase 97.2 0.00051 1.1E-08 61.6 5.3 38 28-66 183-220 (881)
249 PRK12809 putative oxidoreducta 97.2 0.00066 1.4E-08 59.1 5.8 37 28-65 309-345 (639)
250 KOG3855|consensus 97.2 0.00047 1E-08 57.0 4.3 41 24-64 31-74 (481)
251 TIGR02485 CobZ_N-term precorri 97.2 0.00031 6.6E-09 58.1 3.2 30 34-64 1-30 (432)
252 TIGR01317 GOGAT_sm_gam glutama 97.1 0.00093 2E-08 56.4 5.8 36 29-65 143-178 (485)
253 PRK06567 putative bifunctional 97.1 0.0005 1.1E-08 62.3 4.3 34 28-62 382-415 (1028)
254 PTZ00188 adrenodoxin reductase 97.1 0.00097 2.1E-08 56.5 5.7 38 29-66 39-76 (506)
255 PF00743 FMO-like: Flavin-bind 97.1 0.00073 1.6E-08 57.8 4.9 35 31-66 3-37 (531)
256 KOG1335|consensus 97.1 0.0011 2.3E-08 54.6 5.5 36 28-64 38-73 (506)
257 PRK09754 phenylpropionate diox 97.0 0.0012 2.5E-08 54.1 5.2 36 29-65 3-40 (396)
258 PLN02976 amine oxidase 97.0 0.0011 2.5E-08 62.2 5.6 37 29-66 693-729 (1713)
259 KOG4716|consensus 97.0 0.00071 1.5E-08 54.9 3.8 35 27-62 17-51 (503)
260 PRK12771 putative glutamate sy 97.0 0.001 2.2E-08 57.0 5.0 37 28-65 136-172 (564)
261 PF06039 Mqo: Malate:quinone o 97.0 0.0014 3E-08 55.0 5.0 38 28-65 2-40 (488)
262 KOG2853|consensus 97.0 0.001 2.2E-08 54.1 4.1 40 26-65 83-125 (509)
263 PRK13984 putative oxidoreducta 96.9 0.0017 3.6E-08 56.1 5.6 38 27-65 281-318 (604)
264 PRK13512 coenzyme A disulfide 96.9 0.0015 3.3E-08 54.2 5.0 35 31-65 3-38 (438)
265 PRK09564 coenzyme A disulfide 96.9 0.0016 3.4E-08 53.8 4.8 35 31-65 2-37 (444)
266 COG0445 GidA Flavin-dependent 96.8 0.0011 2.3E-08 56.6 3.5 36 28-64 3-38 (621)
267 PTZ00318 NADH dehydrogenase-li 96.8 0.002 4.3E-08 53.3 4.5 38 27-65 8-45 (424)
268 KOG4254|consensus 96.7 0.0017 3.7E-08 54.3 4.0 38 27-65 12-49 (561)
269 KOG0405|consensus 96.7 0.0022 4.7E-08 52.3 4.1 35 28-63 19-53 (478)
270 PF13434 K_oxygenase: L-lysine 96.7 0.0025 5.4E-08 51.6 4.3 38 28-65 1-38 (341)
271 KOG2960|consensus 96.6 0.00063 1.4E-08 52.1 0.6 37 29-65 76-113 (328)
272 TIGR03169 Nterm_to_SelD pyridi 96.6 0.0031 6.7E-08 50.7 4.5 35 31-65 1-37 (364)
273 COG0029 NadB Aspartate oxidase 96.6 0.0022 4.7E-08 54.1 3.6 33 31-65 9-41 (518)
274 KOG0042|consensus 96.6 0.0009 1.9E-08 57.0 1.2 36 29-65 67-102 (680)
275 PRK09897 hypothetical protein; 96.6 0.004 8.6E-08 53.3 5.0 37 30-66 2-39 (534)
276 PRK04965 NADH:flavorubredoxin 96.5 0.0052 1.1E-07 49.8 5.3 35 30-64 3-38 (377)
277 KOG2311|consensus 96.5 0.0037 8.1E-08 52.8 4.2 36 27-63 26-61 (679)
278 COG0493 GltD NADPH-dependent g 96.3 0.005 1.1E-07 51.8 4.1 36 30-66 124-159 (457)
279 COG2907 Predicted NAD/FAD-bind 96.2 0.006 1.3E-07 49.8 4.0 37 28-66 7-43 (447)
280 COG0446 HcaD Uncharacterized N 96.1 0.0095 2.1E-07 47.8 4.7 38 29-67 136-173 (415)
281 COG3634 AhpF Alkyl hydroperoxi 96.0 0.0034 7.4E-08 51.3 1.8 35 26-61 208-243 (520)
282 KOG1276|consensus 96.0 0.013 2.8E-07 48.9 4.8 39 29-67 11-50 (491)
283 KOG4405|consensus 95.9 0.011 2.3E-07 49.2 4.2 42 24-66 3-44 (547)
284 PF13454 NAD_binding_9: FAD-NA 95.8 0.013 2.9E-07 41.9 3.9 32 33-64 1-36 (156)
285 COG1206 Gid NAD(FAD)-utilizing 95.7 0.02 4.2E-07 46.6 4.8 36 29-65 3-38 (439)
286 KOG0399|consensus 95.7 0.018 3.8E-07 53.3 4.9 45 29-74 1785-1831(2142)
287 KOG1800|consensus 95.6 0.021 4.6E-07 47.1 4.7 37 29-65 20-57 (468)
288 COG0569 TrkA K+ transport syst 95.5 0.022 4.7E-07 43.5 4.4 33 31-64 2-34 (225)
289 COG1252 Ndh NADH dehydrogenase 95.5 0.026 5.6E-07 46.8 5.1 37 29-65 3-40 (405)
290 COG2509 Uncharacterized FAD-de 95.5 0.019 4.1E-07 48.1 4.0 40 26-65 15-58 (486)
291 PF02558 ApbA: Ketopantoate re 95.3 0.037 7.9E-07 38.9 4.8 31 32-63 1-31 (151)
292 PRK09754 phenylpropionate diox 95.3 0.032 6.9E-07 45.6 4.9 35 30-65 145-179 (396)
293 PRK05976 dihydrolipoamide dehy 95.2 0.034 7.3E-07 46.6 4.9 35 30-65 181-215 (472)
294 KOG2404|consensus 95.1 0.037 8.1E-07 45.0 4.4 34 31-65 11-44 (477)
295 PRK04965 NADH:flavorubredoxin 95.0 0.041 9E-07 44.6 4.8 35 30-65 142-176 (377)
296 KOG1439|consensus 95.0 0.014 3.1E-07 48.1 2.0 39 27-66 2-40 (440)
297 PRK07251 pyridine nucleotide-d 95.0 0.045 9.8E-07 45.3 5.0 34 31-65 159-192 (438)
298 TIGR01350 lipoamide_DH dihydro 94.9 0.047 1E-06 45.4 4.9 35 30-65 171-205 (461)
299 PRK14989 nitrite reductase sub 94.9 0.056 1.2E-06 48.8 5.6 37 30-66 4-43 (847)
300 TIGR02374 nitri_red_nirB nitri 94.9 0.041 9E-07 49.2 4.7 35 32-66 1-37 (785)
301 KOG2844|consensus 94.9 0.041 9E-07 48.3 4.5 34 28-62 38-72 (856)
302 PRK06912 acoL dihydrolipoamide 94.9 0.052 1.1E-06 45.3 5.1 35 30-65 171-205 (458)
303 TIGR01421 gluta_reduc_1 glutat 94.8 0.055 1.2E-06 45.2 5.0 35 30-65 167-201 (450)
304 TIGR02053 MerA mercuric reduct 94.8 0.056 1.2E-06 45.1 5.0 35 30-65 167-201 (463)
305 COG4529 Uncharacterized protei 94.8 0.062 1.4E-06 45.3 5.2 36 30-65 2-39 (474)
306 KOG3851|consensus 94.7 0.036 7.9E-07 44.9 3.6 39 27-65 37-76 (446)
307 PRK07846 mycothione reductase; 94.7 0.059 1.3E-06 45.0 5.0 35 30-65 167-201 (451)
308 KOG2755|consensus 94.6 0.03 6.5E-07 44.2 2.8 34 31-64 1-35 (334)
309 PRK06467 dihydrolipoamide dehy 94.6 0.06 1.3E-06 45.2 4.9 35 30-65 175-209 (471)
310 COG5044 MRS6 RAB proteins gera 94.6 0.06 1.3E-06 44.2 4.6 37 29-66 6-42 (434)
311 PF01593 Amino_oxidase: Flavin 94.6 0.043 9.2E-07 43.7 3.7 27 39-66 1-27 (450)
312 TIGR03385 CoA_CoA_reduc CoA-di 94.5 0.067 1.5E-06 44.0 4.9 35 30-65 138-172 (427)
313 PRK06115 dihydrolipoamide dehy 94.5 0.072 1.6E-06 44.6 5.0 35 30-65 175-209 (466)
314 PRK05708 2-dehydropantoate 2-r 94.5 0.073 1.6E-06 42.3 4.8 33 30-63 3-35 (305)
315 PF01210 NAD_Gly3P_dh_N: NAD-d 94.5 0.055 1.2E-06 38.8 3.7 31 32-63 2-32 (157)
316 COG1252 Ndh NADH dehydrogenase 94.4 0.039 8.5E-07 45.8 3.3 38 28-65 154-203 (405)
317 PRK06416 dihydrolipoamide dehy 94.4 0.077 1.7E-06 44.2 5.0 35 30-65 173-207 (462)
318 PRK07818 dihydrolipoamide dehy 94.4 0.076 1.7E-06 44.4 5.0 34 31-65 174-207 (466)
319 PRK06370 mercuric reductase; V 94.3 0.082 1.8E-06 44.1 5.0 35 30-65 172-206 (463)
320 COG3486 IucD Lysine/ornithine 94.3 0.071 1.5E-06 44.2 4.4 40 26-65 2-41 (436)
321 PRK05249 soluble pyridine nucl 94.2 0.09 1.9E-06 43.7 5.0 35 30-65 176-210 (461)
322 PF13738 Pyr_redox_3: Pyridine 94.2 0.078 1.7E-06 38.7 4.1 34 29-63 167-200 (203)
323 PRK13512 coenzyme A disulfide 94.2 0.081 1.7E-06 44.0 4.6 34 31-65 150-183 (438)
324 PRK06249 2-dehydropantoate 2-r 94.2 0.1 2.2E-06 41.4 5.1 33 30-63 6-38 (313)
325 PRK06292 dihydrolipoamide dehy 94.0 0.099 2.1E-06 43.5 4.9 35 30-65 170-204 (460)
326 PRK09564 coenzyme A disulfide 93.9 0.1 2.3E-06 43.0 4.8 35 30-65 150-184 (444)
327 PF02737 3HCDH_N: 3-hydroxyacy 93.9 0.11 2.3E-06 38.2 4.4 32 32-64 2-33 (180)
328 TIGR03452 mycothione_red mycot 93.9 0.11 2.4E-06 43.4 4.9 35 30-65 170-204 (452)
329 COG1249 Lpd Pyruvate/2-oxoglut 93.7 0.15 3.3E-06 43.0 5.5 35 31-66 175-209 (454)
330 PRK06129 3-hydroxyacyl-CoA deh 93.7 0.1 2.2E-06 41.3 4.3 32 31-63 4-35 (308)
331 KOG0404|consensus 93.7 0.082 1.8E-06 41.0 3.5 33 30-63 9-41 (322)
332 PRK12921 2-dehydropantoate 2-r 93.7 0.11 2.5E-06 40.6 4.5 30 31-61 2-31 (305)
333 PRK01438 murD UDP-N-acetylmura 93.7 0.12 2.6E-06 43.4 4.7 33 30-63 17-49 (480)
334 TIGR01424 gluta_reduc_2 glutat 93.6 0.13 2.8E-06 42.8 4.9 34 31-65 168-201 (446)
335 PRK06327 dihydrolipoamide dehy 93.5 0.14 3.1E-06 42.9 5.0 35 30-65 184-218 (475)
336 PRK07845 flavoprotein disulfid 93.4 0.16 3.4E-06 42.6 5.0 34 31-65 179-212 (466)
337 PRK10262 thioredoxin reductase 93.4 0.15 3.2E-06 40.3 4.7 35 30-65 147-181 (321)
338 PLN02507 glutathione reductase 93.4 0.15 3.3E-06 43.2 4.9 34 31-65 205-238 (499)
339 PRK06116 glutathione reductase 93.3 0.16 3.4E-06 42.2 5.0 35 30-65 168-202 (450)
340 PRK06522 2-dehydropantoate 2-r 93.3 0.14 3.1E-06 39.9 4.5 31 31-62 2-32 (304)
341 PF02254 TrkA_N: TrkA-N domain 93.3 0.19 4.2E-06 33.5 4.6 32 32-64 1-32 (116)
342 TIGR03140 AhpF alkyl hydropero 93.2 0.15 3.2E-06 43.4 4.6 35 30-65 353-387 (515)
343 PRK08010 pyridine nucleotide-d 93.0 0.19 4.1E-06 41.6 5.0 34 31-65 160-193 (441)
344 TIGR03143 AhpF_homolog putativ 93.0 0.16 3.4E-06 43.7 4.5 35 30-65 144-178 (555)
345 TIGR01292 TRX_reduct thioredox 92.9 0.19 4.2E-06 38.6 4.6 35 30-65 142-176 (300)
346 PTZ00153 lipoamide dehydrogena 92.8 0.18 4E-06 44.4 4.8 34 31-65 314-347 (659)
347 PRK13748 putative mercuric red 92.8 0.19 4.1E-06 42.9 4.7 32 31-63 272-303 (561)
348 PRK15317 alkyl hydroperoxide r 92.7 0.2 4.3E-06 42.6 4.7 35 30-65 352-386 (517)
349 PTZ00058 glutathione reductase 92.7 0.19 4.2E-06 43.4 4.7 35 30-65 238-272 (561)
350 PF03721 UDPG_MGDP_dh_N: UDP-g 92.7 0.16 3.4E-06 37.6 3.7 33 31-64 2-34 (185)
351 PRK02705 murD UDP-N-acetylmura 92.7 0.18 3.9E-06 41.9 4.5 33 31-64 2-34 (459)
352 TIGR02374 nitri_red_nirB nitri 92.7 0.18 4E-06 45.1 4.6 34 31-65 142-175 (785)
353 PRK14694 putative mercuric red 92.6 0.22 4.8E-06 41.7 4.8 32 31-63 180-211 (468)
354 PRK08293 3-hydroxybutyryl-CoA 92.5 0.23 4.9E-06 39.0 4.5 32 31-63 5-36 (287)
355 PRK09260 3-hydroxybutyryl-CoA 92.5 0.22 4.9E-06 39.0 4.5 32 31-63 3-34 (288)
356 PRK08229 2-dehydropantoate 2-r 92.4 0.23 4.9E-06 39.7 4.5 32 31-63 4-35 (341)
357 PRK14727 putative mercuric red 92.3 0.23 5.1E-06 41.7 4.7 31 31-62 190-220 (479)
358 PLN02546 glutathione reductase 92.3 0.23 5.1E-06 42.8 4.8 35 30-65 253-287 (558)
359 PTZ00318 NADH dehydrogenase-li 92.3 0.25 5.4E-06 40.9 4.7 35 31-65 175-222 (424)
360 PRK12770 putative glutamate sy 91.8 0.3 6.5E-06 39.3 4.6 32 31-63 174-206 (352)
361 PRK14989 nitrite reductase sub 91.8 0.27 5.9E-06 44.5 4.7 34 31-65 147-180 (847)
362 PRK14620 NAD(P)H-dependent gly 91.8 0.29 6.3E-06 38.9 4.4 32 31-63 2-33 (326)
363 TIGR00518 alaDH alanine dehydr 91.7 0.79 1.7E-05 37.5 7.0 34 29-63 167-200 (370)
364 TIGR01438 TGR thioredoxin and 91.7 0.3 6.5E-06 41.3 4.6 31 31-62 182-212 (484)
365 PRK07819 3-hydroxybutyryl-CoA 91.7 0.31 6.7E-06 38.4 4.4 33 31-64 7-39 (286)
366 TIGR01316 gltA glutamate synth 91.6 0.32 7E-06 40.6 4.7 34 30-64 273-306 (449)
367 PRK07530 3-hydroxybutyryl-CoA 91.6 0.38 8.3E-06 37.7 4.9 33 30-63 5-37 (292)
368 PRK14106 murD UDP-N-acetylmura 91.6 0.32 7E-06 40.3 4.7 34 29-63 5-38 (450)
369 PTZ00052 thioredoxin reductase 91.4 0.32 7E-06 41.2 4.5 31 31-62 184-214 (499)
370 PRK14618 NAD(P)H-dependent gly 91.3 0.42 9E-06 38.1 4.9 32 31-63 6-37 (328)
371 COG1893 ApbA Ketopantoate redu 91.1 0.32 6.9E-06 38.9 4.0 33 31-64 2-34 (307)
372 PRK06718 precorrin-2 dehydroge 91.0 0.43 9.3E-06 35.8 4.4 33 29-62 10-42 (202)
373 PRK06035 3-hydroxyacyl-CoA deh 90.8 0.44 9.4E-06 37.4 4.5 33 31-64 5-37 (291)
374 PRK07066 3-hydroxybutyryl-CoA 90.7 0.44 9.5E-06 38.4 4.5 32 31-63 9-40 (321)
375 PF06100 Strep_67kDa_ant: Stre 90.7 0.45 9.7E-06 40.5 4.7 36 30-65 3-41 (500)
376 TIGR01423 trypano_reduc trypan 90.6 0.38 8.3E-06 40.7 4.3 36 30-65 188-225 (486)
377 PRK06719 precorrin-2 dehydroge 90.6 0.5 1.1E-05 34.0 4.3 31 29-60 13-43 (157)
378 PRK10669 putative cation:proto 90.4 0.53 1.2E-05 40.4 5.0 35 29-64 417-451 (558)
379 PRK00094 gpsA NAD(P)H-dependen 90.3 0.51 1.1E-05 37.2 4.5 32 31-63 3-34 (325)
380 PRK05808 3-hydroxybutyryl-CoA 90.0 0.56 1.2E-05 36.6 4.4 31 31-62 5-35 (282)
381 PRK06130 3-hydroxybutyryl-CoA 90.0 0.66 1.4E-05 36.6 4.9 32 31-63 6-37 (311)
382 PRK12831 putative oxidoreducta 90.0 0.55 1.2E-05 39.5 4.7 34 30-64 282-315 (464)
383 PRK14619 NAD(P)H-dependent gly 89.4 0.72 1.6E-05 36.5 4.8 33 30-63 5-37 (308)
384 PRK09496 trkA potassium transp 89.4 0.62 1.3E-05 38.5 4.5 32 31-63 2-33 (453)
385 cd01075 NAD_bind_Leu_Phe_Val_D 89.2 0.73 1.6E-05 34.4 4.4 33 30-63 29-61 (200)
386 TIGR03026 NDP-sugDHase nucleot 89.0 0.6 1.3E-05 38.5 4.1 33 31-64 2-34 (411)
387 COG1748 LYS9 Saccharopine dehy 88.9 0.69 1.5E-05 38.3 4.4 34 31-64 3-36 (389)
388 PF01488 Shikimate_DH: Shikima 88.9 1 2.2E-05 31.3 4.7 35 28-63 11-46 (135)
389 PLN02172 flavin-containing mon 88.8 0.58 1.3E-05 39.4 4.0 33 31-64 206-238 (461)
390 PRK11064 wecC UDP-N-acetyl-D-m 88.7 0.69 1.5E-05 38.4 4.3 34 30-64 4-37 (415)
391 PLN02545 3-hydroxybutyryl-CoA 88.6 0.8 1.7E-05 35.9 4.5 32 31-63 6-37 (295)
392 PF01262 AlaDh_PNT_C: Alanine 88.4 1 2.2E-05 32.5 4.6 34 29-63 20-53 (168)
393 PRK11749 dihydropyrimidine deh 88.4 0.85 1.8E-05 38.1 4.7 34 30-64 274-308 (457)
394 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.2 0.81 1.7E-05 39.1 4.5 33 31-64 7-39 (503)
395 TIGR01470 cysG_Nterm siroheme 88.2 0.95 2.1E-05 34.0 4.4 33 30-63 10-42 (205)
396 PRK09496 trkA potassium transp 88.0 0.9 1.9E-05 37.6 4.5 35 29-64 231-265 (453)
397 TIGR01763 MalateDH_bact malate 88.0 0.98 2.1E-05 36.0 4.6 31 31-62 3-34 (305)
398 TIGR01915 npdG NADPH-dependent 87.9 1 2.2E-05 33.9 4.5 32 31-63 2-34 (219)
399 PRK04148 hypothetical protein; 87.9 0.61 1.3E-05 32.9 3.0 33 30-64 18-50 (134)
400 PRK15116 sulfur acceptor prote 87.9 1.1 2.3E-05 35.3 4.7 37 28-65 29-66 (268)
401 cd05292 LDH_2 A subgroup of L- 87.9 1 2.2E-05 35.9 4.6 33 31-64 2-36 (308)
402 TIGR02354 thiF_fam2 thiamine b 87.8 1.1 2.3E-05 33.6 4.5 34 28-62 20-54 (200)
403 PRK12475 thiamine/molybdopteri 87.4 1.1 2.3E-05 36.4 4.6 35 28-63 23-58 (338)
404 COG1004 Ugd Predicted UDP-gluc 87.1 1 2.2E-05 37.5 4.3 33 31-64 2-34 (414)
405 PF13241 NAD_binding_7: Putati 87.0 0.65 1.4E-05 30.8 2.7 33 29-62 7-39 (103)
406 PRK07417 arogenate dehydrogena 87.0 1 2.2E-05 35.2 4.1 32 31-63 2-33 (279)
407 KOG2852|consensus 86.9 0.27 5.8E-06 39.5 0.8 36 29-64 10-50 (380)
408 cd05191 NAD_bind_amino_acid_DH 86.9 1.7 3.6E-05 27.7 4.5 33 29-61 23-55 (86)
409 PF00899 ThiF: ThiF family; I 86.7 1.8 3.9E-05 29.8 4.9 35 30-65 3-38 (135)
410 COG2072 TrkA Predicted flavopr 86.7 1 2.3E-05 37.7 4.2 35 30-65 176-210 (443)
411 PRK12778 putative bifunctional 86.5 1.2 2.6E-05 39.7 4.7 34 30-64 571-605 (752)
412 PRK07688 thiamine/molybdopteri 86.3 1.5 3.3E-05 35.5 4.9 36 27-63 22-58 (339)
413 PRK11730 fadB multifunctional 86.2 1.1 2.4E-05 39.9 4.3 34 30-64 314-347 (715)
414 PRK08268 3-hydroxy-acyl-CoA de 86.2 1.2 2.6E-05 38.0 4.5 33 31-64 9-41 (507)
415 cd00401 AdoHcyase S-adenosyl-L 86.1 1.3 2.9E-05 36.9 4.6 35 29-64 202-236 (413)
416 PRK03659 glutathione-regulated 86.1 1 2.2E-05 39.2 4.0 35 29-64 400-434 (601)
417 cd05311 NAD_bind_2_malic_enz N 86.0 2.4 5.2E-05 32.3 5.6 34 29-63 25-61 (226)
418 PRK03562 glutathione-regulated 86.0 1.3 2.8E-05 38.8 4.6 35 29-64 400-434 (621)
419 COG3634 AhpF Alkyl hydroperoxi 85.9 0.95 2.1E-05 37.4 3.5 36 29-65 354-389 (520)
420 PRK02472 murD UDP-N-acetylmura 85.9 1.3 2.7E-05 36.7 4.3 32 31-63 7-38 (447)
421 PF03446 NAD_binding_2: NAD bi 85.8 1.7 3.6E-05 31.1 4.5 32 31-63 3-34 (163)
422 PRK07531 bifunctional 3-hydrox 85.6 1.3 2.9E-05 37.5 4.4 32 31-63 6-37 (495)
423 KOG3923|consensus 85.6 1.3 2.8E-05 35.6 4.0 38 28-65 2-45 (342)
424 TIGR02437 FadB fatty oxidation 85.5 1.3 2.8E-05 39.5 4.4 35 29-64 313-347 (714)
425 cd01080 NAD_bind_m-THF_DH_Cycl 85.4 1.9 4.1E-05 31.5 4.6 36 27-63 42-78 (168)
426 cd05291 HicDH_like L-2-hydroxy 85.2 1.8 3.9E-05 34.3 4.7 33 31-64 2-36 (306)
427 KOG2495|consensus 85.0 0.48 1E-05 39.8 1.4 37 29-65 218-267 (491)
428 TIGR02853 spore_dpaA dipicolin 85.0 1.6 3.5E-05 34.5 4.4 35 29-64 151-185 (287)
429 KOG2304|consensus 84.9 1.3 2.7E-05 34.5 3.5 38 26-64 8-45 (298)
430 COG0451 WcaG Nucleoside-diphos 84.6 2 4.3E-05 33.1 4.7 33 32-65 3-36 (314)
431 PRK08017 oxidoreductase; Provi 84.4 2 4.3E-05 32.2 4.5 32 31-63 4-36 (256)
432 cd01483 E1_enzyme_family Super 84.3 2.2 4.8E-05 29.6 4.4 33 31-64 1-34 (143)
433 COG2085 Predicted dinucleotide 84.2 1.6 3.5E-05 33.2 3.8 30 32-62 4-33 (211)
434 cd01078 NAD_bind_H4MPT_DH NADP 84.2 2 4.4E-05 31.5 4.3 33 29-62 28-61 (194)
435 cd01339 LDH-like_MDH L-lactate 84.1 1.9 4.1E-05 34.0 4.4 32 32-64 1-33 (300)
436 TIGR01505 tartro_sem_red 2-hyd 83.6 1.7 3.7E-05 34.0 3.9 31 32-63 2-32 (291)
437 PF03807 F420_oxidored: NADP o 83.6 2.8 6.1E-05 26.8 4.4 32 32-64 2-37 (96)
438 PF00670 AdoHcyase_NAD: S-aden 83.5 1.8 3.9E-05 31.5 3.7 37 27-64 21-57 (162)
439 PF13460 NAD_binding_10: NADH( 83.4 2.7 5.8E-05 29.9 4.6 32 32-64 1-33 (183)
440 COG0287 TyrA Prephenate dehydr 83.2 2.4 5.3E-05 33.5 4.7 36 29-65 3-38 (279)
441 PRK06223 malate dehydrogenase; 83.1 2.3 5E-05 33.5 4.5 32 31-63 4-36 (307)
442 TIGR02441 fa_ox_alpha_mit fatt 83.1 1.8 3.8E-05 38.8 4.2 34 30-64 336-369 (737)
443 TIGR03376 glycerol3P_DH glycer 82.7 2.4 5.2E-05 34.5 4.5 30 31-61 1-38 (342)
444 cd01487 E1_ThiF_like E1_ThiF_l 82.7 3.1 6.7E-05 30.3 4.8 31 32-63 2-33 (174)
445 PRK08306 dipicolinate synthase 82.5 2.5 5.5E-05 33.5 4.5 35 28-63 151-185 (296)
446 PLN02353 probable UDP-glucose 82.4 2.2 4.8E-05 36.2 4.4 34 31-64 3-37 (473)
447 PRK12549 shikimate 5-dehydroge 82.4 2.4 5.3E-05 33.4 4.4 33 30-63 128-161 (284)
448 PRK12814 putative NADPH-depend 82.2 2.5 5.4E-05 37.2 4.8 35 30-64 324-358 (652)
449 PTZ00082 L-lactate dehydrogena 82.1 3 6.5E-05 33.5 4.9 34 30-64 7-41 (321)
450 PRK15461 NADH-dependent gamma- 82.0 2.3 5E-05 33.5 4.1 32 31-63 3-34 (296)
451 TIGR00507 aroE shikimate 5-deh 82.0 2.6 5.7E-05 32.7 4.4 33 30-63 118-150 (270)
452 PF10727 Rossmann-like: Rossma 82.0 1.1 2.3E-05 31.3 2.0 36 26-62 7-42 (127)
453 TIGR00936 ahcY adenosylhomocys 81.8 2.6 5.7E-05 35.1 4.6 35 29-64 195-229 (406)
454 cd05213 NAD_bind_Glutamyl_tRNA 81.7 2.5 5.5E-05 33.6 4.3 37 28-64 177-213 (311)
455 KOG1336|consensus 81.7 2.5 5.4E-05 35.9 4.3 37 29-66 213-249 (478)
456 PRK07774 short chain dehydroge 81.7 3 6.4E-05 31.1 4.5 33 30-63 7-40 (250)
457 PRK11199 tyrA bifunctional cho 81.7 2.1 4.6E-05 35.0 3.9 33 30-63 99-132 (374)
458 TIGR02356 adenyl_thiF thiazole 81.6 3.5 7.6E-05 30.7 4.8 35 28-63 20-55 (202)
459 PRK07326 short chain dehydroge 81.6 2.7 5.9E-05 31.1 4.2 33 30-63 7-40 (237)
460 TIGR01317 GOGAT_sm_gam glutama 81.5 2.9 6.4E-05 35.3 4.9 36 30-65 284-319 (485)
461 COG0446 HcaD Uncharacterized N 81.4 2.8 6.1E-05 33.4 4.6 34 32-65 1-35 (415)
462 PRK05476 S-adenosyl-L-homocyst 81.4 2.7 5.9E-05 35.2 4.5 35 29-64 212-246 (425)
463 PRK11154 fadJ multifunctional 81.2 5.5 0.00012 35.5 6.6 35 30-64 310-344 (708)
464 COG0281 SfcA Malic enzyme [Ene 80.9 4.7 0.0001 33.8 5.6 50 15-65 183-237 (432)
465 PRK12779 putative bifunctional 80.8 2.7 5.9E-05 38.7 4.7 34 30-64 448-481 (944)
466 PF03435 Saccharop_dh: Sacchar 80.8 2.2 4.8E-05 34.7 3.7 33 32-64 1-34 (386)
467 PLN02572 UDP-sulfoquinovose sy 80.7 3.5 7.5E-05 34.5 5.0 31 30-61 48-79 (442)
468 PRK06057 short chain dehydroge 80.7 3.3 7.1E-05 31.2 4.5 34 30-64 8-42 (255)
469 TIGR03467 HpnE squalene-associ 80.7 1.4 3E-05 35.6 2.5 23 43-66 1-23 (419)
470 TIGR02440 FadJ fatty oxidation 80.6 6.7 0.00014 34.9 6.9 35 30-64 305-339 (699)
471 COG0492 TrxB Thioredoxin reduc 80.5 3.4 7.3E-05 33.0 4.6 35 31-66 145-179 (305)
472 cd01065 NAD_bind_Shikimate_DH 80.5 3.7 8E-05 28.5 4.4 35 29-63 19-53 (155)
473 PRK10537 voltage-gated potassi 80.4 3.1 6.7E-05 34.5 4.5 33 29-62 240-272 (393)
474 PRK05690 molybdopterin biosynt 80.3 3.5 7.7E-05 31.7 4.6 37 28-64 31-67 (245)
475 PRK01710 murD UDP-N-acetylmura 80.3 3 6.4E-05 34.9 4.4 32 31-63 16-47 (458)
476 COG1250 FadB 3-hydroxyacyl-CoA 80.2 2.7 5.8E-05 33.8 3.9 33 31-64 5-37 (307)
477 PRK04308 murD UDP-N-acetylmura 80.1 3.6 7.7E-05 34.2 4.8 33 31-64 7-39 (445)
478 PRK00258 aroE shikimate 5-dehy 80.1 3.4 7.3E-05 32.3 4.4 35 29-64 123-158 (278)
479 PRK12548 shikimate 5-dehydroge 80.1 3.5 7.5E-05 32.5 4.5 33 30-63 127-160 (289)
480 TIGR02355 moeB molybdopterin s 80.0 4.2 9E-05 31.3 4.8 38 28-65 23-60 (240)
481 PRK08644 thiamine biosynthesis 79.9 4.1 8.8E-05 30.7 4.7 35 28-63 27-62 (212)
482 TIGR00872 gnd_rel 6-phosphoglu 79.9 3.2 6.9E-05 32.7 4.3 32 31-63 2-33 (298)
483 cd00757 ThiF_MoeB_HesA_family 79.9 3.7 8.1E-05 31.1 4.5 36 28-63 20-55 (228)
484 PRK15057 UDP-glucose 6-dehydro 79.8 3.2 7E-05 34.2 4.4 32 31-64 2-33 (388)
485 PRK11559 garR tartronate semia 79.8 3.1 6.8E-05 32.5 4.2 32 31-63 4-35 (296)
486 PRK09853 putative selenate red 79.8 3.2 7E-05 38.5 4.8 35 30-64 669-704 (1019)
487 PRK08217 fabG 3-ketoacyl-(acyl 79.6 3.8 8.3E-05 30.4 4.5 33 30-63 6-39 (253)
488 PRK07502 cyclohexadienyl dehyd 79.6 3 6.6E-05 32.9 4.1 32 31-63 8-41 (307)
489 TIGR01214 rmlD dTDP-4-dehydror 79.4 3.4 7.3E-05 31.6 4.2 30 32-62 2-32 (287)
490 PF13478 XdhC_C: XdhC Rossmann 79.4 3 6.5E-05 29.3 3.6 32 32-64 1-32 (136)
491 PRK09424 pntA NAD(P) transhydr 79.3 3.4 7.3E-05 35.5 4.5 36 28-64 164-199 (509)
492 PTZ00142 6-phosphogluconate de 79.3 2.6 5.7E-05 35.7 3.8 34 30-64 2-35 (470)
493 TIGR02964 xanthine_xdhC xanthi 79.3 5.5 0.00012 30.8 5.3 37 27-64 98-134 (246)
494 TIGR01318 gltD_gamma_fam gluta 79.1 3.6 7.9E-05 34.6 4.6 35 29-64 282-317 (467)
495 PRK09599 6-phosphogluconate de 79.0 3.6 7.8E-05 32.4 4.3 32 31-63 2-33 (301)
496 TIGR01372 soxA sarcosine oxida 79.0 3.3 7.1E-05 38.3 4.6 34 30-64 318-352 (985)
497 PLN02520 bifunctional 3-dehydr 78.8 3.3 7.2E-05 35.6 4.3 33 29-62 379-411 (529)
498 PRK08328 hypothetical protein; 78.8 4.3 9.4E-05 30.9 4.6 37 28-64 26-62 (231)
499 TIGR03466 HpnA hopanoid-associ 78.6 3.8 8.3E-05 31.8 4.4 32 32-64 3-35 (328)
500 PRK12828 short chain dehydroge 78.3 4 8.6E-05 30.0 4.2 32 31-63 9-41 (239)
No 1
>KOG1238|consensus
Probab=99.94 E-value=6.3e-27 Score=196.96 Aligned_cols=111 Identities=40% Similarity=0.710 Sum_probs=101.8
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCccCcchhhhcccCccccccccCCCccccccCCCCeee
Q psy3408 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNH 105 (146)
Q Consensus 26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~ 105 (146)
....|||||||+|.|||++|.+|+|.+..+|||||+|+.+....++|.....+.....+|.|.++|++..|+.+.++.++
T Consensus 54 ~~~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~~~~~~~p~~~~~~q~s~~dw~y~t~Ps~~ac~~m~~~~c~ 133 (623)
T KOG1238|consen 54 LDSSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDPPLYSDPPLLAANLQLSLYDWSYHTEPSQHACLAMSEDRCY 133 (623)
T ss_pred cccCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCCcccccchHHHHHhccccccccCcCccChhhhhhhcCCcee
Confidence 45689999999999999999999998899999999999998788888666666778999999999999999999999999
Q ss_pred eccccEEeccccc-cceecCCChhhhhhhhHH
Q psy3408 106 WPRGKGLGGFPAT-GLIYSNHVKTGRIELNLI 136 (146)
Q Consensus 106 ~~rG~~lGGsS~i-~~~~~R~~~~df~~~~~~ 136 (146)
|||||+|||||.+ +|+|.|+++.|||+|..-
T Consensus 134 wpRGrVLGGsS~iN~m~Y~RG~r~Dyd~W~~~ 165 (623)
T KOG1238|consen 134 WPRGRVLGGSSVLNAMFYVRGNRRDYDRWAAE 165 (623)
T ss_pred cCccceecccccccceEEecCCccchHHHHHh
Confidence 9999999999999 999999999999776543
No 2
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=99.86 E-value=2.1e-22 Score=157.52 Aligned_cols=101 Identities=40% Similarity=0.692 Sum_probs=73.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCccCcc-hhhhcccCccccccccCCCccccccCCCCeeeecc
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPG-YWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPR 108 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~~~~~p~-~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~~r 108 (146)
|||||||+|++|+++|.+|+++++++|||||+|+........+. ..........+|.+.+.|+. ...++.+.+++
T Consensus 1 yD~iIVGsG~~G~v~A~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 76 (296)
T PF00732_consen 1 YDYIIVGSGAGGSVVASRLSEAGNKKVLVLEAGPRYPPEDSTPPSSFYQDFDSEYDWGYYSGPQP----FLNGRTINWPR 76 (296)
T ss_dssp EEEEEES-SHHHHHHHHHHTTSTTS-EEEEESSBSCTTSGHHGGGGGGGCTTTTTBBGEEECEEE----CTTTTSEEEEE
T ss_pred CCEEEECcCHHHHHHHHHHhhCCCCcEEEEEccccCccccchhhhccccccCccccccccccccc----ccccceeeeec
Confidence 89999999999999999999975579999999988654332111 12222345677888887776 56778889999
Q ss_pred ccEEeccccc-cceecCCChhhhhhhh
Q psy3408 109 GKGLGGFPAT-GLIYSNHVKTGRIELN 134 (146)
Q Consensus 109 G~~lGGsS~i-~~~~~R~~~~df~~~~ 134 (146)
|++|||||.| +|++.|+++.||++|.
T Consensus 77 G~~lGGsS~in~~~~~R~~~~df~~w~ 103 (296)
T PF00732_consen 77 GKGLGGSSAINGGVYFRPSPSDFDEWA 103 (296)
T ss_dssp B-STTGGGGTS--BE-B--HHHHHHHH
T ss_pred ceecCCcccccccccccCCcccchhhh
Confidence 9999999999 9999999999997754
No 3
>PRK02106 choline dehydrogenase; Validated
Probab=99.85 E-value=3.1e-21 Score=163.57 Aligned_cols=103 Identities=41% Similarity=0.636 Sum_probs=83.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC---CCCccCcchhhhc-ccCccccccccCCCccccccCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP---PEASELPGYWFNL-LKSRQDWAYRTQPDNRMFFGLENR 102 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~---~~~~~~p~~~~~~-~~~~~~w~~~~~p~~~~~~~~~~~ 102 (146)
..+|||||||+|++|+++|.+|++.++++|||||+|+.. ....+.|...... ....++|.|.+.|++ ...++
T Consensus 3 ~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~p~~----~~~~~ 78 (560)
T PRK02106 3 TMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYNWAYETEPEP----HMNNR 78 (560)
T ss_pred CCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCcccCCCcceeCcHHHHHhcCCCceeeceecccCC----CCCCC
Confidence 357999999999999999999999559999999999653 2334455533222 234568999888887 45667
Q ss_pred eeeeccccEEeccccc-cceecCCChhhhhhh
Q psy3408 103 VNHWPRGKGLGGFPAT-GLIYSNHVKTGRIEL 133 (146)
Q Consensus 103 ~~~~~rG~~lGGsS~i-~~~~~R~~~~df~~~ 133 (146)
.+.+++|++|||||.| +|+|+|+.+.||+.|
T Consensus 79 ~~~~~~g~~lGGsS~iN~~~~~R~~~~Dfd~w 110 (560)
T PRK02106 79 RMECPRGKVLGGSSSINGMVYIRGNAMDYDNW 110 (560)
T ss_pred eeecccccccCCCCCccceEEecCCHHHHHHH
Confidence 8899999999999999 999999999999665
No 4
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=99.83 E-value=1.1e-20 Score=159.95 Aligned_cols=103 Identities=39% Similarity=0.714 Sum_probs=88.0
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC-CccCcchhhhcccC-ccccccccCCCccccccCCCCe
Q psy3408 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE-ASELPGYWFNLLKS-RQDWAYRTQPDNRMFFGLENRV 103 (146)
Q Consensus 26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~-~~~~p~~~~~~~~~-~~~w~~~~~p~~~~~~~~~~~~ 103 (146)
...+||+||||+|.+|+++|.+|++ ++++|+|||+|+.... ...+|..+...... ..+|.|.++|++ ...++.
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~-~g~~VllLEaG~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~----~~~~r~ 78 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSD-AGLSVLVLEAGGPDRRPLIQMPAAYAFLMNGPRYDWGFRTEPEP----HLRGRE 78 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcC-CCCeEEEEeCCCCCCccceecchhHhhhccCcccCCccccCccc----CCCCcc
Confidence 4568999999999999999999995 6999999999976432 45666655555443 788999999988 678889
Q ss_pred eeeccccEEeccccc-cceecCCChhhhhhh
Q psy3408 104 NHWPRGKGLGGFPAT-GLIYSNHVKTGRIEL 133 (146)
Q Consensus 104 ~~~~rG~~lGGsS~i-~~~~~R~~~~df~~~ 133 (146)
+.++||++|||+|.| +|+|+|+++.||+.|
T Consensus 79 ~~~~rgk~lGGsS~ing~~~~R~~~~Df~~w 109 (542)
T COG2303 79 LAWPRGKVLGGSSSINGMVYVRGHPEDFDAW 109 (542)
T ss_pred ccccccCcccchhhhccceeecCCHHHHHHH
Confidence 999999999999999 999999999999554
No 5
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=99.82 E-value=1.8e-20 Score=158.03 Aligned_cols=99 Identities=39% Similarity=0.626 Sum_probs=80.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC---CCccCcchhhhc-ccCccccccccCCCccccccCCCCeeee
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP---EASELPGYWFNL-LKSRQDWAYRTQPDNRMFFGLENRVNHW 106 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~---~~~~~p~~~~~~-~~~~~~w~~~~~p~~~~~~~~~~~~~~~ 106 (146)
||||||+|.+|+++|.+|+++++.+|||||+|+... .....|...... ....++|.|.+.|++ ...++.+.+
T Consensus 1 D~iIVG~G~aG~vvA~rLs~~~~~~VlvlEaG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~----~~~~~~~~~ 76 (532)
T TIGR01810 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYPAGNKRYNWIYETEPEP----HMNNRRVGH 76 (532)
T ss_pred CEEEECCCchHHHHHHHhccCCCCeEEEEecCCCCCCCCcceeCcHHHHHhcCCCCcceeeEcccCC----CCCCceEee
Confidence 899999999999999999997447999999997532 234455432222 234568999999988 566788999
Q ss_pred ccccEEeccccc-cceecCCChhhhhhh
Q psy3408 107 PRGKGLGGFPAT-GLIYSNHVKTGRIEL 133 (146)
Q Consensus 107 ~rG~~lGGsS~i-~~~~~R~~~~df~~~ 133 (146)
++|++|||||.| +|+|.|+++.||+.|
T Consensus 77 ~~g~~lGGss~in~~~~~R~~~~d~~~w 104 (532)
T TIGR01810 77 ARGKVLGGSSSINGMIYQRGNPMDYEKW 104 (532)
T ss_pred ecccccCCCCCEeeeEEecCCHHHHHHH
Confidence 999999999999 999999999999665
No 6
>PLN02785 Protein HOTHEAD
Probab=99.79 E-value=2.9e-19 Score=152.44 Aligned_cols=99 Identities=27% Similarity=0.341 Sum_probs=78.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCccCcchhhhcccCccccccccCCCccccccCCCCeeee
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHW 106 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~ 106 (146)
...|||||||+|.+|+++|.+|++ +.+|||||+|+.+.....+.. ...+.....+|.|.+.||. ...++.+.+
T Consensus 53 ~~~yD~IIVG~G~aG~~lA~~Ls~--~~~VLllE~G~~~~~~~~~~~-~~~~~~~~~d~~~~~~~q~----~~~~~~~~~ 125 (587)
T PLN02785 53 DSAYDYIVVGGGTAGCPLAATLSQ--NFSVLLLERGGVPFGNANVSF-LENFHIGLADTSPTSASQA----FISTDGVIN 125 (587)
T ss_pred cccCCEEEECcCHHHHHHHHHHhc--CCcEEEEecCCCCCCCchhhh-HHhhCCcccccCCcccccc----ccCCCceec
Confidence 447999999999999999999999 589999999975321111111 1112234568999988886 455678899
Q ss_pred ccccEEeccccc-cceecCCChhhhhh
Q psy3408 107 PRGKGLGGFPAT-GLIYSNHVKTGRIE 132 (146)
Q Consensus 107 ~rG~~lGGsS~i-~~~~~R~~~~df~~ 132 (146)
+|||+|||||.+ +|+|.|++++||++
T Consensus 126 ~rGr~LGGsS~iN~~~y~Rg~~~d~~~ 152 (587)
T PLN02785 126 ARARVLGGGTCINAGFYSRASTRFIQK 152 (587)
T ss_pred cccceecchhhhcCeEEEeCCHHHhcc
Confidence 999999999999 99999999999976
No 7
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=98.95 E-value=2.5e-09 Score=90.97 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=33.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
||+||||+|++|+++|..|+++ |++|+|||++...+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~-g~~v~~~e~~~~~~ 36 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDA-GLKVAMVEIGAADS 36 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHC-CCeEEEEeccCccC
Confidence 6999999999999999999996 99999999987653
No 8
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=98.85 E-value=2.6e-09 Score=86.92 Aligned_cols=86 Identities=24% Similarity=0.288 Sum_probs=58.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCCCccCcchhhhcccCccccccccCCCccccccCCCCeeee
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHW 106 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~~~~~p~~~~~~~~~~~~w~~~~~p~~~~~~~~~~~~~~~ 106 (146)
++.+|+||||+|++|+++|..+++. |++|+|||+++..+....+.+....+..+... |+.+.
T Consensus 1 ~~~~dviIIGgGpAGlMaA~~aa~~-G~~V~lid~~~k~GrKil~sGgGrCN~Tn~~~------~~~~l----------- 62 (408)
T COG2081 1 MERFDVIIIGGGPAGLMAAISAAKA-GRRVLLIDKGPKLGRKILMSGGGRCNFTNSEA------PDEFL----------- 62 (408)
T ss_pred CCcceEEEECCCHHHHHHHHHHhhc-CCEEEEEecCccccceeEecCCCCcccccccc------HHHHH-----------
Confidence 3578999999999999999999996 99999999999877555555544443322111 11100
Q ss_pred ccccEEeccccc-cceecCCChhhhhhh
Q psy3408 107 PRGKGLGGFPAT-GLIYSNHVKTGRIEL 133 (146)
Q Consensus 107 ~rG~~lGGsS~i-~~~~~R~~~~df~~~ 133 (146)
..-+|.+.. ...+-|+.++||..|
T Consensus 63 ---s~~p~~~~fl~sal~~ft~~d~i~~ 87 (408)
T COG2081 63 ---SRNPGNGHFLKSALARFTPEDFIDW 87 (408)
T ss_pred ---HhCCCcchHHHHHHHhCCHHHHHHH
Confidence 001244444 666778888888665
No 9
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.75 E-value=1.2e-08 Score=83.53 Aligned_cols=38 Identities=39% Similarity=0.735 Sum_probs=35.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
+.||++|||+|+||+++|+.|+++ |.+|+|||+++.++
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~-G~~VlvlEk~~~~G 39 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKA-GLDVLVLEKGSEPG 39 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHc-CCeEEEEecCCCCC
Confidence 579999999999999999999997 89999999998875
No 10
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.66 E-value=3.6e-08 Score=80.43 Aligned_cols=48 Identities=35% Similarity=0.462 Sum_probs=41.6
Q ss_pred hhccccccccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 17 TVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 17 ~~~~~~~~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
+.+++.+......+|++|||+|++|+++|..|+++ |++|+|+|+.+..
T Consensus 6 ~~~~~~~~~~~~~~dV~IvGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~ 53 (415)
T PRK07364 6 ATSPTLPSTRSLTYDVAIVGGGIVGLTLAAALKDS-GLRIALIEAQPAE 53 (415)
T ss_pred cCCCCCCCCCccccCEEEECcCHHHHHHHHHHhcC-CCEEEEEecCCcc
Confidence 35556677777789999999999999999999996 9999999998764
No 11
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=98.63 E-value=4.5e-08 Score=80.97 Aligned_cols=38 Identities=47% Similarity=0.611 Sum_probs=34.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
+.||+||||+|++|+++|+.|+++ |++|+|||+++.+.
T Consensus 4 ~~~DViIVGaGpAG~~aA~~La~~-G~~V~llEr~~~~g 41 (428)
T PRK10157 4 DIFDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNSAG 41 (428)
T ss_pred ccCcEEEECcCHHHHHHHHHHHhC-CCeEEEEEcCCCCC
Confidence 469999999999999999999996 99999999987653
No 12
>PRK10015 oxidoreductase; Provisional
Probab=98.62 E-value=5.3e-08 Score=80.62 Aligned_cols=37 Identities=43% Similarity=0.655 Sum_probs=34.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.+||+||||+|++|+++|+.|+++ |.+|+|||+++.+
T Consensus 4 ~~~DViIVGgGpAG~~aA~~LA~~-G~~VlliEr~~~~ 40 (429)
T PRK10015 4 DKFDAIVVGAGVAGSVAALVMARA-GLDVLVIERGDSA 40 (429)
T ss_pred cccCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence 469999999999999999999996 9999999998765
No 13
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.61 E-value=4e-08 Score=81.94 Aligned_cols=39 Identities=33% Similarity=0.470 Sum_probs=34.9
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
...+.||++|||+|++|+++|..|+++ |++|+|||+...
T Consensus 35 ~~~~~~DViIVGaGPAG~~aA~~LA~~-G~~VlllEr~~~ 73 (450)
T PLN00093 35 LSGRKLRVAVIGGGPAGACAAETLAKG-GIETFLIERKLD 73 (450)
T ss_pred cCCCCCeEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCC
Confidence 345689999999999999999999996 999999999754
No 14
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.57 E-value=7.1e-08 Score=76.79 Aligned_cols=60 Identities=28% Similarity=0.504 Sum_probs=45.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC----------CccCcchhhhcc--cCcccccccc
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE----------ASELPGYWFNLL--KSRQDWAYRT 89 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~----------~~~~p~~~~~~~--~~~~~w~~~~ 89 (146)
.||++|||+|.+|+++|..+++. |++|||||+.+..+. ...+..+.++++ .++..|.|.+
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~-gk~VLIvekR~HIGGNaYde~d~~tGIlvHkYGpHIFHT~~~~Vwdyv~ 72 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQL-GKRVLIVEKRNHIGGNAYDEADDQTGILVHKYGPHIFHTDNKRVWDYVN 72 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHc-CCEEEEEeccccCCCccccccCCCCCeEEeeccCceeecCchHHHHHHh
Confidence 37999999999999999988886 999999999887642 234444555554 3456677754
No 15
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.55 E-value=1.2e-07 Score=71.86 Aligned_cols=38 Identities=34% Similarity=0.471 Sum_probs=31.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
.++|++|||+|++|+++|+.|+++ |.||+++|+...++
T Consensus 16 ~~~DV~IVGaGpaGl~aA~~La~~-g~kV~v~E~~~~~G 53 (230)
T PF01946_consen 16 LEYDVAIVGAGPAGLTAAYYLAKA-GLKVAVIERKLSPG 53 (230)
T ss_dssp TEESEEEE--SHHHHHHHHHHHHH-TS-EEEEESSSS-B
T ss_pred ccCCEEEECCChhHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 479999999999999999999997 99999999986653
No 16
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.50 E-value=1.5e-07 Score=74.03 Aligned_cols=36 Identities=39% Similarity=0.578 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
++|++|||+|++|+++|..|+++ |++|+|+|+.+..
T Consensus 1 ~~dV~IvGaG~aGl~~A~~L~~~-G~~v~i~E~~~~~ 36 (356)
T PF01494_consen 1 EYDVAIVGAGPAGLAAALALARA-GIDVTIIERRPDP 36 (356)
T ss_dssp EEEEEEE--SHHHHHHHHHHHHT-TCEEEEEESSSSC
T ss_pred CceEEEECCCHHHHHHHHHHHhc-ccccccchhcccc
Confidence 48999999999999999999997 9999999998765
No 17
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.48 E-value=2e-07 Score=71.92 Aligned_cols=35 Identities=46% Similarity=0.775 Sum_probs=32.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
||++|||+|++|+++|.+|++. |.+|+|||+.+..
T Consensus 1 ~dv~IiGaG~aGl~~A~~l~~~-g~~v~vie~~~~~ 35 (295)
T TIGR02032 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLLEKKSFP 35 (295)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCCC
Confidence 7999999999999999999996 9999999998754
No 18
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=98.47 E-value=2.4e-07 Score=72.00 Aligned_cols=37 Identities=30% Similarity=0.401 Sum_probs=34.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..+|++|||+|++|+.+|+.|+++ |.+|+|||+....
T Consensus 20 ~~~DVvIVGgGpAGL~aA~~la~~-G~~V~vlEk~~~~ 56 (254)
T TIGR00292 20 AESDVIIVGAGPSGLTAAYYLAKN-GLKVCVLERSLAF 56 (254)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 378999999999999999999996 9999999998765
No 19
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=98.47 E-value=2.9e-07 Score=57.59 Aligned_cols=32 Identities=28% Similarity=0.451 Sum_probs=29.1
Q ss_pred EECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 34 IVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 34 IIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
|||+|++|+.+|+.|+++ +++|+|+|+.+..+
T Consensus 1 IiGaG~sGl~aA~~L~~~-g~~v~v~E~~~~~G 32 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKA-GYRVTVFEKNDRLG 32 (68)
T ss_dssp EES-SHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred CEeeCHHHHHHHHHHHHC-CCcEEEEecCcccC
Confidence 899999999999999997 99999999998765
No 20
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=98.47 E-value=1.8e-07 Score=77.23 Aligned_cols=36 Identities=39% Similarity=0.612 Sum_probs=27.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
||++|||+|++|+++|..+++. |.+|+|||+++..+
T Consensus 1 ydviIIGgGaAGl~aA~~aa~~-g~~V~vlE~~~~~g 36 (409)
T PF03486_consen 1 YDVIIIGGGAAGLMAAITAAEK-GARVLVLERNKRVG 36 (409)
T ss_dssp -SEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSS-
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCCEEEEeCCcccc
Confidence 7999999999999999999996 99999999998764
No 21
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.46 E-value=2.1e-07 Score=78.24 Aligned_cols=38 Identities=21% Similarity=0.405 Sum_probs=34.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
+.+|+||||+|.+|+++|..|+++ |++|+|+||....+
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~-G~~V~VlE~~~~~G 39 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEKNDRVG 39 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhC-CCEEEEEEecCCCC
Confidence 468999999999999999999997 99999999887654
No 22
>PRK09126 hypothetical protein; Provisional
Probab=98.46 E-value=2.2e-07 Score=75.24 Aligned_cols=36 Identities=33% Similarity=0.446 Sum_probs=33.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+++|++|||+|++|+++|..|+++ |++|+|+|+.+.
T Consensus 2 ~~~dviIvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~ 37 (392)
T PRK09126 2 MHSDIVVVGAGPAGLSFARSLAGS-GLKVTLIERQPL 37 (392)
T ss_pred CcccEEEECcCHHHHHHHHHHHhC-CCcEEEEeCCCc
Confidence 479999999999999999999996 999999999875
No 23
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.45 E-value=2.2e-07 Score=75.62 Aligned_cols=32 Identities=31% Similarity=0.675 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
||++|||+|++|+++|..|+++ |.+|+|||+.
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~-G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARA-GIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECC
Confidence 7999999999999999999996 9999999997
No 24
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=98.44 E-value=3.3e-07 Score=71.28 Aligned_cols=37 Identities=27% Similarity=0.312 Sum_probs=33.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|++|||+|++|+.+|++|++. |++|+|||+....
T Consensus 24 ~~~DVvIVGgGpAGl~AA~~la~~-G~~V~liEk~~~~ 60 (257)
T PRK04176 24 LEVDVAIVGAGPSGLTAAYYLAKA-GLKVAVFERKLSF 60 (257)
T ss_pred ccCCEEEECccHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence 378999999999999999999995 9999999998664
No 25
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=98.41 E-value=3.4e-07 Score=73.60 Aligned_cols=36 Identities=28% Similarity=0.390 Sum_probs=33.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+++|++|||+|..|+++|++|++. |++|+|||++..
T Consensus 2 ~~~dv~IIGgGi~G~s~A~~L~~~-g~~V~lie~~~~ 37 (376)
T PRK11259 2 MRYDVIVIGLGSMGSAAGYYLARR-GLRVLGLDRFMP 37 (376)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEecccC
Confidence 468999999999999999999997 999999999854
No 26
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.41 E-value=3.8e-07 Score=73.70 Aligned_cols=38 Identities=42% Similarity=0.670 Sum_probs=34.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
++.+|++|||+|++|+++|..|++. |.+|+|+|+++..
T Consensus 3 ~~~~dv~IvGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~ 40 (388)
T PRK07608 3 HMKFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAPP 40 (388)
T ss_pred CccCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCc
Confidence 4578999999999999999999996 9999999998764
No 27
>PRK08013 oxidoreductase; Provisional
Probab=98.40 E-value=4e-07 Score=74.40 Aligned_cols=37 Identities=30% Similarity=0.443 Sum_probs=34.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
+++|++|||+|++|+++|..|+++ |++|+|||+.+..
T Consensus 2 ~~~dV~IvGaGpaGl~~A~~La~~-G~~v~viE~~~~~ 38 (400)
T PRK08013 2 QSVDVVIAGGGMVGLAVACGLQGS-GLRVAVLEQRVPE 38 (400)
T ss_pred CcCCEEEECcCHHHHHHHHHHhhC-CCEEEEEeCCCCc
Confidence 468999999999999999999996 9999999998763
No 28
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.37 E-value=4.7e-07 Score=74.91 Aligned_cols=36 Identities=42% Similarity=0.719 Sum_probs=33.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
++||+||||+|++|+.+|.+|++. |++|+|+|+++.
T Consensus 2 ~~yDvvVIGgGpaGl~aA~~la~~-g~~V~lie~~~~ 37 (441)
T PRK08010 2 NKYQAVIIGFGKAGKTLAVTLAKA-GWRVALIEQSNA 37 (441)
T ss_pred CcCCEEEECCCHhHHHHHHHHHHC-CCeEEEEcCCCC
Confidence 479999999999999999999996 999999999753
No 29
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=98.37 E-value=1.3e-06 Score=73.78 Aligned_cols=37 Identities=27% Similarity=0.424 Sum_probs=33.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++||||||+|.+|+.+|.+++++ |.+|+|||+.+..
T Consensus 60 ~~~DVvVVG~G~AGl~AAi~Aa~~-Ga~VivlEK~~~~ 96 (506)
T PRK06481 60 DKYDIVIVGAGGAGMSAAIEAKDA-GMNPVILEKMPVA 96 (506)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC-CCCEEEEECCCCC
Confidence 478999999999999999999996 9999999998764
No 30
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.36 E-value=4.8e-07 Score=75.44 Aligned_cols=39 Identities=23% Similarity=0.330 Sum_probs=36.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
+++||+||||+|.+|+++|..|+++ |+||++||+.+..+
T Consensus 2 ~~~~DViViGtGL~e~ilAa~Ls~~-GkkVLhlD~n~~yG 40 (443)
T PTZ00363 2 DETYDVIVCGTGLKECILSGLLSVN-GKKVLHMDRNPYYG 40 (443)
T ss_pred CCcceEEEECCChHHHHHHhhhhhC-CCEEEEecCCCCcC
Confidence 5689999999999999999999996 99999999998775
No 31
>PRK07045 putative monooxygenase; Reviewed
Probab=98.35 E-value=6.3e-07 Score=72.72 Aligned_cols=37 Identities=30% Similarity=0.446 Sum_probs=34.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..+|++|||+|++|+++|..|+++ |.+|+|+|+.+..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~-G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGAR-GHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhc-CCcEEEEeCCCcc
Confidence 568999999999999999999996 9999999998765
No 32
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=98.35 E-value=6.4e-07 Score=74.55 Aligned_cols=37 Identities=32% Similarity=0.463 Sum_probs=33.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
..++|+||||+|.+|+.+|.+++++ |.+|+|||+.+.
T Consensus 2 ~~~~DVvVVG~G~aGl~AA~~aa~~-G~~V~vlEk~~~ 38 (466)
T PRK08274 2 ASMVDVLVIGGGNAALCAALAAREA-GASVLLLEAAPR 38 (466)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 3578999999999999999999996 999999999863
No 33
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.34 E-value=5.2e-07 Score=73.10 Aligned_cols=37 Identities=35% Similarity=0.541 Sum_probs=33.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+.||++|||+|++|+++|..|+++ |++|+|||+.+.
T Consensus 3 ~~~~dViIvGgG~aGl~~A~~La~~-G~~V~liE~~~~ 39 (391)
T PRK08020 3 NQPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAAP 39 (391)
T ss_pred cccccEEEECcCHHHHHHHHHHhcC-CCEEEEEcCCCC
Confidence 3579999999999999999999996 999999999753
No 34
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=98.34 E-value=6.3e-07 Score=75.79 Aligned_cols=37 Identities=30% Similarity=0.505 Sum_probs=34.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
++.||+||||+|..|+.+|.+|+++ |.+|+|||+++.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~r-Gl~V~LvEk~d~ 40 (508)
T PRK12266 4 METYDLLVIGGGINGAGIARDAAGR-GLSVLLCEQDDL 40 (508)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 4579999999999999999999996 999999999854
No 35
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.34 E-value=6.3e-07 Score=74.12 Aligned_cols=36 Identities=33% Similarity=0.554 Sum_probs=33.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
++||++|||+|++|..+|.+|++. |++|+|+|+++.
T Consensus 2 ~~~dvvVIG~GpaG~~aA~~l~~~-g~~V~liE~~~~ 37 (438)
T PRK07251 2 LTYDLIVIGFGKAGKTLAAKLASA-GKKVALVEESKA 37 (438)
T ss_pred CccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecCCc
Confidence 479999999999999999999996 999999999863
No 36
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=98.34 E-value=6.6e-07 Score=75.45 Aligned_cols=37 Identities=30% Similarity=0.529 Sum_probs=34.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
..+||++|||+|..|+.+|++|+++ |.+|+|||+++.
T Consensus 4 ~~~~DVvIIGGGi~G~~~A~~la~r-G~~V~LlEk~d~ 40 (502)
T PRK13369 4 PETYDLFVIGGGINGAGIARDAAGR-GLKVLLCEKDDL 40 (502)
T ss_pred CcccCEEEECCCHHHHHHHHHHHhC-CCcEEEEECCCC
Confidence 4579999999999999999999997 999999999954
No 37
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=98.34 E-value=6.7e-07 Score=72.65 Aligned_cols=37 Identities=35% Similarity=0.504 Sum_probs=33.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
...+|++|||+|++|+++|..|+++ |.+|+|||+.+.
T Consensus 4 ~~~~dV~IvGaG~aGl~~A~~La~~-G~~v~liE~~~~ 40 (392)
T PRK08773 4 RSRRDAVIVGGGVVGAACALALADA-GLSVALVEGREP 40 (392)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCEEEEEeCCCC
Confidence 3578999999999999999999997 999999999864
No 38
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=98.34 E-value=6.2e-07 Score=70.57 Aligned_cols=33 Identities=36% Similarity=0.542 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
|++|||+|.+|+++|++|+++ |++|+|||++..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~-G~~V~l~e~~~~ 33 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARR-GHSVTLLERGDI 33 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHT-TSEEEEEESSST
T ss_pred CEEEECcCHHHHHHHHHHHHC-CCeEEEEeeccc
Confidence 899999999999999999996 999999999933
No 39
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.34 E-value=6.8e-07 Score=72.36 Aligned_cols=38 Identities=26% Similarity=0.351 Sum_probs=34.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
++.+|+||||+|++|+++|..|+++ |.+|+|||+.+..
T Consensus 5 ~~~~dViIVGaG~~Gl~~A~~L~~~-G~~v~liE~~~~~ 42 (388)
T PRK07494 5 KEHTDIAVIGGGPAGLAAAIALARA-GASVALVAPEPPY 42 (388)
T ss_pred CCCCCEEEECcCHHHHHHHHHHhcC-CCeEEEEeCCCCC
Confidence 3468999999999999999999996 9999999998653
No 40
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.34 E-value=6.3e-07 Score=73.46 Aligned_cols=34 Identities=35% Similarity=0.578 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+|++|||+|++|+++|..|+++ |++|+|||+...
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~-G~~V~llE~~~~ 34 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASA-GIQTFLLERKPD 34 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhC-CCcEEEEecCCC
Confidence 6999999999999999999996 999999999754
No 41
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=98.33 E-value=6.5e-07 Score=72.05 Aligned_cols=34 Identities=35% Similarity=0.513 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
||++|||+|..|+++|++|+++ |++|+|||++..
T Consensus 1 ~dvvIIGaGi~G~s~A~~La~~-g~~V~l~e~~~~ 34 (380)
T TIGR01377 1 FDVIVVGAGIMGCFAAYHLAKH-GKKTLLLEQFDL 34 (380)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccCC
Confidence 6999999999999999999996 999999999754
No 42
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.33 E-value=7.4e-07 Score=67.86 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=34.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
.+.|++|||+|++|+++|++|+++ |.||+|+|+.-..+
T Consensus 29 ~esDViIVGaGPsGLtAAyyLAk~-g~kV~i~E~~ls~G 66 (262)
T COG1635 29 LESDVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKLSFG 66 (262)
T ss_pred hhccEEEECcCcchHHHHHHHHhC-CceEEEEEeecccC
Confidence 367999999999999999999996 99999999976543
No 43
>PRK06116 glutathione reductase; Validated
Probab=98.32 E-value=7.6e-07 Score=73.87 Aligned_cols=34 Identities=44% Similarity=0.668 Sum_probs=32.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
.+||++|||+|++|..+|.+|++. |++|+|+|++
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~~a~~-G~~V~liE~~ 36 (450)
T PRK06116 3 KDYDLIVIGGGSGGIASANRAAMY-GAKVALIEAK 36 (450)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 479999999999999999999996 9999999996
No 44
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.32 E-value=8e-07 Score=72.20 Aligned_cols=34 Identities=38% Similarity=0.653 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+|++|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus 3 ~~dv~IvGgG~aGl~~A~~L~~~-G~~v~l~E~~~ 36 (384)
T PRK08849 3 KYDIAVVGGGMVGAATALGFAKQ-GRSVAVIEGGE 36 (384)
T ss_pred cccEEEECcCHHHHHHHHHHHhC-CCcEEEEcCCC
Confidence 58999999999999999999996 99999999875
No 45
>PRK06370 mercuric reductase; Validated
Probab=98.32 E-value=7.9e-07 Score=74.05 Aligned_cols=37 Identities=38% Similarity=0.561 Sum_probs=33.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+.+||++|||+|++|..+|.++++. |++|+|+|++..
T Consensus 3 ~~~~DvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~~ 39 (463)
T PRK06370 3 AQRYDAIVIGAGQAGPPLAARAAGL-GMKVALIERGLL 39 (463)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEecCcc
Confidence 4579999999999999999999996 999999998643
No 46
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.31 E-value=6.6e-07 Score=72.96 Aligned_cols=34 Identities=38% Similarity=0.648 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
++|++|||+|++|+++|..|+++ |.+|+|+|+.+
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~ 35 (405)
T PRK05714 2 RADLLIVGAGMVGSALALALQGS-GLEVLLLDGGP 35 (405)
T ss_pred CccEEEECccHHHHHHHHHHhcC-CCEEEEEcCCC
Confidence 68999999999999999999996 99999999986
No 47
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.30 E-value=8.4e-07 Score=71.27 Aligned_cols=34 Identities=41% Similarity=0.620 Sum_probs=32.0
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
|++|||+|++|+++|..|+++ |.+|+|+|+.+.+
T Consensus 1 dViIvGaG~aGl~~A~~L~~~-G~~v~v~Er~~~~ 34 (385)
T TIGR01988 1 DIVIVGGGMVGLALALALARS-GLKIALIEATPAE 34 (385)
T ss_pred CEEEECCCHHHHHHHHHHhcC-CCEEEEEeCCCcc
Confidence 799999999999999999997 9999999999764
No 48
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.30 E-value=8.1e-07 Score=73.97 Aligned_cols=35 Identities=37% Similarity=0.716 Sum_probs=32.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+||++|||+|++|..+|.++++. |++|+|+|++.
T Consensus 1 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~~~ 35 (450)
T TIGR01421 1 KHYDYLVIGGGSGGIASARRAAEH-GAKALLVEAKK 35 (450)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEecccc
Confidence 369999999999999999999996 99999999964
No 49
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=98.29 E-value=9.1e-07 Score=72.35 Aligned_cols=34 Identities=38% Similarity=0.602 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
|+||||+|.+|+.+|.+++++ |.+|+|||+++..
T Consensus 1 DVvVIG~G~AGl~AA~~Aae~-G~~V~lvek~~~~ 34 (417)
T PF00890_consen 1 DVVVIGGGLAGLAAAIEAAEA-GAKVLLVEKGPRL 34 (417)
T ss_dssp SEEEE-SSHHHHHHHHHHHHT-TT-EEEEESSSGG
T ss_pred CEEEECCCHHHHHHHHHHhhh-cCeEEEEEeeccc
Confidence 899999999999999999996 9999999999873
No 50
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.29 E-value=8.7e-07 Score=73.38 Aligned_cols=35 Identities=43% Similarity=0.615 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
|+||||+|++|+.+|..+++. |.+|+|||+.+..+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~-G~~VlLiE~~~~lG 35 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARA-GAKVLLIEKGGFLG 35 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TS-EEEE-SSSSST
T ss_pred CEEEECccHHHHHHHHHHHHC-CCEEEEEECCccCC
Confidence 899999999999999999996 99999999998753
No 51
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.29 E-value=9.9e-07 Score=73.72 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=31.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
.+||++|||+|++|..+|.++++. |++|+|+|+.
T Consensus 2 ~~~DvvVIG~GpaG~~AA~~aa~~-G~~V~liE~~ 35 (466)
T PRK06115 2 ASYDVVIIGGGPGGYNAAIRAGQL-GLKVACVEGR 35 (466)
T ss_pred CcccEEEECCCHHHHHHHHHHHhC-CCeEEEEecC
Confidence 469999999999999999999996 9999999974
No 52
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=98.29 E-value=1.5e-06 Score=70.94 Aligned_cols=39 Identities=36% Similarity=0.501 Sum_probs=33.5
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCC
Q psy3408 25 NISGKFDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGG 63 (146)
Q Consensus 25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~ 63 (146)
..+.++|++|||+|..|+++|++|+++.| ++|+|||++.
T Consensus 26 ~~~~~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~ 65 (407)
T TIGR01373 26 EPKPTYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGW 65 (407)
T ss_pred CCCccCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEccc
Confidence 34568999999999999999999998426 5999999974
No 53
>PLN02985 squalene monooxygenase
Probab=98.28 E-value=1.3e-06 Score=74.09 Aligned_cols=41 Identities=39% Similarity=0.558 Sum_probs=36.0
Q ss_pred ccccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 23 EDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 23 ~~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+...+..+|++|||+|++|+++|..|+++ |++|+|||+...
T Consensus 37 ~~~~~~~~DViIVGAG~aGlalA~aLa~~-G~~V~vlEr~~~ 77 (514)
T PLN02985 37 EERKDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDLR 77 (514)
T ss_pred ccCcCCCceEEEECCCHHHHHHHHHHHHc-CCeEEEEECcCC
Confidence 34456689999999999999999999997 999999999754
No 54
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=98.28 E-value=1.1e-06 Score=73.75 Aligned_cols=36 Identities=33% Similarity=0.504 Sum_probs=33.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
||+||||+|.+|+++|..|+++ |++|+||||.+.++
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~-G~~V~vlE~~~~~G 36 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVK-GAKVLVLERYLIPG 36 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHC-CCcEEEEECCCCCC
Confidence 6999999999999999999996 99999999987764
No 55
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=98.28 E-value=1e-06 Score=71.94 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=32.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+|++|||+|..|+.+|++|++. |++|+|||+++.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~-g~~V~vle~~~~ 35 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQR-GYQVTVFDRHRY 35 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 5999999999999999999996 999999999864
No 56
>PRK06185 hypothetical protein; Provisional
Probab=98.27 E-value=1.1e-06 Score=71.58 Aligned_cols=37 Identities=35% Similarity=0.470 Sum_probs=33.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+++|++|||+|++|+++|..|+++ |++|+|||+.+.
T Consensus 4 ~~~~dV~IvGgG~~Gl~~A~~La~~-G~~v~liE~~~~ 40 (407)
T PRK06185 4 VETTDCCIVGGGPAGMMLGLLLARA-GVDVTVLEKHAD 40 (407)
T ss_pred cccccEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCc
Confidence 3579999999999999999999996 999999999764
No 57
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=98.27 E-value=1.1e-06 Score=70.51 Aligned_cols=34 Identities=32% Similarity=0.483 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+|++|||+|..|+++|++|++. |++|+|||++..
T Consensus 1 ~dv~IIG~Gi~G~s~A~~L~~~-G~~V~vle~~~~ 34 (365)
T TIGR03364 1 YDLIIVGAGILGLAHAYAAARR-GLSVTVIERSSR 34 (365)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 6999999999999999999996 999999999764
No 58
>PRK08244 hypothetical protein; Provisional
Probab=98.27 E-value=1.3e-06 Score=73.32 Aligned_cols=36 Identities=33% Similarity=0.596 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
++||+|||+|++|+++|..|+++ |.+|+|||+.+..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALA-GVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 58999999999999999999996 9999999998654
No 59
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.27 E-value=1e-06 Score=73.17 Aligned_cols=33 Identities=24% Similarity=0.471 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
+||++|||+|++|..+|.++++. |++|+|+|++
T Consensus 2 ~yDvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~ 34 (446)
T TIGR01424 2 DYDLFVIGAGSGGVRAARLAANH-GAKVAIAEEP 34 (446)
T ss_pred cccEEEECCCHHHHHHHHHHHhC-CCcEEEEecC
Confidence 69999999999999999999996 9999999995
No 60
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.26 E-value=1.3e-06 Score=72.57 Aligned_cols=37 Identities=27% Similarity=0.396 Sum_probs=33.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..||++|||+|++|..+|.+|++. |++|+|+|+++..
T Consensus 4 ~~yDvvVIGaGpaG~~aA~~la~~-G~~v~liE~~~~~ 40 (461)
T PRK05249 4 YDYDLVVIGSGPAGEGAAMQAAKL-GKRVAVIERYRNV 40 (461)
T ss_pred ccccEEEECCCHHHHHHHHHHHhC-CCEEEEEeccccc
Confidence 469999999999999999999996 9999999997543
No 61
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.26 E-value=1.2e-06 Score=73.09 Aligned_cols=36 Identities=33% Similarity=0.645 Sum_probs=33.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
...||++|||+|++|..+|.+|++. |++|+|+|++.
T Consensus 2 ~~~ydvvVIG~GpaG~~aA~~aa~~-G~~v~lie~~~ 37 (472)
T PRK05976 2 AKEYDLVIIGGGPGGYVAAIRAGQL-GLKTALVEKGK 37 (472)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCeEEEEEccC
Confidence 3579999999999999999999996 99999999963
No 62
>PRK06184 hypothetical protein; Provisional
Probab=98.26 E-value=1.4e-06 Score=73.24 Aligned_cols=37 Identities=35% Similarity=0.518 Sum_probs=34.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++||+|||+|++|+++|..|+++ |.+|+|||+.+..
T Consensus 2 ~~~dVlIVGaGpaGl~~A~~La~~-Gi~v~viE~~~~~ 38 (502)
T PRK06184 2 TTTDVLIVGAGPTGLTLAIELARR-GVSFRLIEKAPEP 38 (502)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence 468999999999999999999997 9999999998654
No 63
>PRK07208 hypothetical protein; Provisional
Probab=98.26 E-value=1.8e-06 Score=71.95 Aligned_cols=39 Identities=28% Similarity=0.398 Sum_probs=35.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
++..|++|||+|++|+++|++|+++ |++|+|+|+.+..+
T Consensus 2 ~~~~~vvIiGaGisGL~aA~~L~~~-g~~v~v~E~~~~~G 40 (479)
T PRK07208 2 TNKKSVVIIGAGPAGLTAAYELLKR-GYPVTVLEADPVVG 40 (479)
T ss_pred CCCCcEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 4578999999999999999999997 99999999987754
No 64
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=98.24 E-value=1.8e-06 Score=71.99 Aligned_cols=38 Identities=32% Similarity=0.351 Sum_probs=33.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD 64 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~ 64 (146)
+.++|++|||+|..|+++|++|+++ +|.+|+|||++..
T Consensus 22 ~~~~DVvIIGgGi~Gls~A~~La~~~~G~~V~vlE~~~~ 60 (460)
T TIGR03329 22 DTQADVCIVGGGFTGLWTAIMIKQQRPALDVLVLEADLC 60 (460)
T ss_pred CceeCEEEECCCHHHHHHHHHHHHhCCCCeEEEEeCCcc
Confidence 4468999999999999999999995 4899999999753
No 65
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.24 E-value=1.5e-06 Score=67.41 Aligned_cols=33 Identities=33% Similarity=0.552 Sum_probs=31.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
||++|||+|++|+.+|..|++. |++|+|+|+++
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~ 33 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARA-NLKTLIIEGME 33 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHC-CCCEEEEeccC
Confidence 6999999999999999999996 99999999875
No 66
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.24 E-value=1.5e-06 Score=72.30 Aligned_cols=35 Identities=29% Similarity=0.495 Sum_probs=32.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+||++|||+|++|..+|.++++. |++|+|+|++.
T Consensus 3 ~~yDvvVIGaGpaG~~aA~~aa~~-G~~V~liE~~~ 37 (462)
T PRK06416 3 FEYDVIVIGAGPGGYVAAIRAAQL-GLKVAIVEKEK 37 (462)
T ss_pred ccccEEEECCCHHHHHHHHHHHHC-CCcEEEEeccc
Confidence 479999999999999999999996 99999999975
No 67
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.24 E-value=1.5e-06 Score=70.39 Aligned_cols=34 Identities=38% Similarity=0.582 Sum_probs=31.4
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
|+||||+|++|+.+|..|++. |.+|+|||+.+..
T Consensus 1 DviIiGaG~AGl~~A~~la~~-g~~v~liE~~~~~ 34 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARP-GLRVQLIEPHPPI 34 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCC
Confidence 899999999999999999986 9999999998654
No 68
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.24 E-value=1.5e-06 Score=72.12 Aligned_cols=34 Identities=44% Similarity=0.692 Sum_probs=31.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
.+||+||||+|++|..+|.+|++. |++|+|||++
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~-g~~v~lie~~ 35 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKL-GKKVALIEKG 35 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHC-CCeEEEEeCC
Confidence 469999999999999999999996 9999999994
No 69
>PRK07121 hypothetical protein; Validated
Probab=98.23 E-value=1.7e-06 Score=72.73 Aligned_cols=37 Identities=32% Similarity=0.453 Sum_probs=34.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++||||||+|.+|+.+|.+++++ |.+|+|||+.+..
T Consensus 19 ~~~DVvVVGaG~AGl~AA~~aae~-G~~VillEK~~~~ 55 (492)
T PRK07121 19 DEADVVVVGFGAAGACAAIEAAAA-GARVLVLERAAGA 55 (492)
T ss_pred CccCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCCCC
Confidence 479999999999999999999996 9999999998764
No 70
>PLN02676 polyamine oxidase
Probab=98.23 E-value=3.2e-06 Score=71.20 Aligned_cols=38 Identities=34% Similarity=0.420 Sum_probs=34.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGDPP 66 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~~~ 66 (146)
..+|++|||+|++|+.+|++|+++ |. +|+|||+.+..+
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~-g~~~v~vlE~~~~~G 63 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEA-GIEDILILEATDRIG 63 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHc-CCCcEEEecCCCCCC
Confidence 478999999999999999999996 87 699999988764
No 71
>PLN02463 lycopene beta cyclase
Probab=98.23 E-value=1.5e-06 Score=72.48 Aligned_cols=37 Identities=35% Similarity=0.536 Sum_probs=33.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
...||++|||+|++|+.+|.+|+++ |.+|+|||+.+.
T Consensus 26 ~~~~DVvIVGaGpAGLalA~~La~~-Gl~V~liE~~~~ 62 (447)
T PLN02463 26 SRVVDLVVVGGGPAGLAVAQQVSEA-GLSVCCIDPSPL 62 (447)
T ss_pred ccCceEEEECCCHHHHHHHHHHHHC-CCeEEEeccCcc
Confidence 3478999999999999999999996 999999999754
No 72
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=98.22 E-value=1.9e-06 Score=70.23 Aligned_cols=37 Identities=35% Similarity=0.654 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~ 65 (146)
.+|++|||+|..|+++|++|+++ +|++|+|||++...
T Consensus 2 ~~dVvIIGgGi~G~s~A~~La~~~~g~~V~llE~~~~~ 39 (393)
T PRK11728 2 MYDFVIIGGGIVGLSTAMQLQERYPGARIAVLEKESGP 39 (393)
T ss_pred CccEEEECCcHHHHHHHHHHHHhCCCCeEEEEeCCCcc
Confidence 58999999999999999999983 48999999998643
No 73
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.22 E-value=1.6e-06 Score=69.97 Aligned_cols=34 Identities=47% Similarity=0.612 Sum_probs=31.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~~ 65 (146)
|++|||+|++|+++|..|+++ | ++|+|+|+.+..
T Consensus 1 dv~IvGaG~aGl~~A~~L~~~-G~~~v~v~E~~~~~ 35 (382)
T TIGR01984 1 DVIIVGGGLVGLSLALALSRL-GKIKIALIEANSPS 35 (382)
T ss_pred CEEEECccHHHHHHHHHHhcC-CCceEEEEeCCCcc
Confidence 899999999999999999997 9 999999998764
No 74
>KOG0029|consensus
Probab=98.21 E-value=2e-06 Score=72.71 Aligned_cols=41 Identities=29% Similarity=0.418 Sum_probs=36.7
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
......+|||||||.+|+++|..|.+. |.+|+|||+.++.+
T Consensus 11 ~~~~~~~VIVIGAGiaGLsAArqL~~~-G~~V~VLEARdRvG 51 (501)
T KOG0029|consen 11 EAGKKKKVIVIGAGLAGLSAARQLQDF-GFDVLVLEARDRVG 51 (501)
T ss_pred cccCCCcEEEECCcHHHHHHHHHHHHc-CCceEEEeccCCcC
Confidence 344578999999999999999999996 99999999988864
No 75
>PRK07190 hypothetical protein; Provisional
Probab=98.21 E-value=1.9e-06 Score=72.56 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=33.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..+|++|||+|++|+++|..|+++ |.+|+|||+.+.+
T Consensus 4 ~~~dVlIVGAGPaGL~lA~~Lar~-Gi~V~llEr~~~~ 40 (487)
T PRK07190 4 QVTDVVIIGAGPVGLMCAYLGQLC-GLNTVIVDKSDGP 40 (487)
T ss_pred ccceEEEECCCHHHHHHHHHHHHc-CCCEEEEeCCCcc
Confidence 468999999999999999999996 9999999998754
No 76
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.21 E-value=1.6e-06 Score=70.45 Aligned_cols=36 Identities=31% Similarity=0.500 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHhC-CCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~-g~~VlvLE~G~~ 64 (146)
.||++|||+|++|+++|..|+++. |.+|+|+|+.+.
T Consensus 1 ~~dv~IvGaG~aGl~~A~~L~~~g~g~~v~liE~~~~ 37 (403)
T PRK07333 1 QCDVVIAGGGYVGLALAVALKQAAPHLPVTVVDAAPA 37 (403)
T ss_pred CCCEEEECccHHHHHHHHHHhcCCCCCEEEEEeCCCc
Confidence 379999999999999999999962 499999999865
No 77
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.21 E-value=1.6e-06 Score=70.80 Aligned_cols=34 Identities=41% Similarity=0.659 Sum_probs=31.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
+.+|++|||+|++|+++|..|+++ |++|+|+|+.
T Consensus 3 ~~~dV~IvGaG~~Gl~~A~~L~~~-G~~v~viE~~ 36 (405)
T PRK08850 3 QSVDVAIIGGGMVGLALAAALKES-DLRIAVIEGQ 36 (405)
T ss_pred CcCCEEEECccHHHHHHHHHHHhC-CCEEEEEcCC
Confidence 468999999999999999999996 9999999996
No 78
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=98.21 E-value=1.8e-06 Score=73.60 Aligned_cols=36 Identities=33% Similarity=0.514 Sum_probs=33.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
..||++|||+|..|+.+|++|+++ |.+|+|||+++.
T Consensus 5 ~~~DVvIIGGGi~G~~iA~~La~r-G~~V~LlEk~d~ 40 (546)
T PRK11101 5 QETDVIIIGGGATGAGIARDCALR-GLRCILVERHDI 40 (546)
T ss_pred ccccEEEECcCHHHHHHHHHHHHc-CCeEEEEECCCC
Confidence 369999999999999999999996 999999999753
No 79
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.20 E-value=1.9e-06 Score=70.14 Aligned_cols=35 Identities=23% Similarity=0.392 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+|++|||+|++|+++|..|+++ |++|+|+|+.+.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~-G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLA-GIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhc-CCCEEEEEcCCc
Confidence 68999999999999999999996 999999999875
No 80
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.20 E-value=1.7e-06 Score=71.58 Aligned_cols=33 Identities=48% Similarity=0.837 Sum_probs=30.8
Q ss_pred ccEEEECCCHHHHHHHHHHHH----hCCCcEEEEecCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSE----ELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~----~~g~~VlvLE~G~ 63 (146)
||++|||+|++|+++|..|++ + |.+|+|||+.+
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~-G~~v~viE~~~ 37 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTK-DLKVLLLDAVD 37 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccC-CCeEEEEeCCC
Confidence 799999999999999999998 5 99999999954
No 81
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.20 E-value=2.1e-06 Score=71.65 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=32.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+||++|||+|++|..+|.++++. |++|+|+|++.
T Consensus 3 ~~~DvvIIG~GpaG~~AA~~aa~~-G~~V~lie~~~ 37 (466)
T PRK07818 3 THYDVVVLGAGPGGYVAAIRAAQL-GLKTAVVEKKY 37 (466)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCeEEEEecCC
Confidence 369999999999999999999996 99999999863
No 82
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.20 E-value=1.9e-06 Score=74.24 Aligned_cols=36 Identities=31% Similarity=0.458 Sum_probs=33.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
+.+|||||||+|+||+.+|..+++. |.+|+|||+..
T Consensus 2 ~~~yDVIVVGGGpAG~eAA~~aAR~-G~kV~LiE~~~ 37 (618)
T PRK05192 2 PEEYDVIVVGGGHAGCEAALAAARM-GAKTLLLTHNL 37 (618)
T ss_pred CccceEEEECchHHHHHHHHHHHHc-CCcEEEEeccc
Confidence 3479999999999999999999996 99999999974
No 83
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.20 E-value=1.9e-06 Score=69.65 Aligned_cols=35 Identities=54% Similarity=0.595 Sum_probs=31.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHh--CCCcEEEEecC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEE--LDWRVLLIEAG 62 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~--~g~~VlvLE~G 62 (146)
..+|++|||+|++|+++|..|+++ .|.+|+|+|+.
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~ 38 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAF 38 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCC
Confidence 578999999999999999999883 29999999995
No 84
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.19 E-value=2.1e-06 Score=73.29 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=32.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+.||++|||||+||+.+|..|++. +++|+|+|++..
T Consensus 3 ~~yDVvIIGgGpAGL~AA~~lar~-g~~V~liE~~~~ 38 (555)
T TIGR03143 3 EIYDLIIIGGGPAGLSAGIYAGRA-KLDTLIIEKDDF 38 (555)
T ss_pred CcCcEEEECCCHHHHHHHHHHHHC-CCCEEEEecCCC
Confidence 469999999999999999999996 999999999753
No 85
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.19 E-value=2.4e-06 Score=71.53 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=33.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..||+||||+|++|..+|.++++. |++|+|+|+.+..
T Consensus 3 ~~~DvvVIG~GpaG~~aA~~aa~~-G~~V~lie~~~~~ 39 (471)
T PRK06467 3 IKTQVVVLGAGPAGYSAAFRAADL-GLETVCVERYSTL 39 (471)
T ss_pred ccceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCcc
Confidence 479999999999999999999996 9999999986433
No 86
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.19 E-value=2.1e-06 Score=70.04 Aligned_cols=35 Identities=23% Similarity=0.420 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+|++|||+|++|+++|..|+++ |++|+|+|+.+.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~-G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKA-GIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHC-CCCEEEEECCCC
Confidence 57999999999999999999996 999999999875
No 87
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.19 E-value=2.2e-06 Score=71.17 Aligned_cols=32 Identities=34% Similarity=0.665 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~ 61 (146)
.||+||||+|++|+.+|.+|++. |++|+|+|+
T Consensus 1 ~yDvvVIG~G~aGl~aA~~la~~-G~~v~lie~ 32 (461)
T TIGR01350 1 AYDVVVIGGGPGGYVAAIRAAQL-GLKVALVEK 32 (461)
T ss_pred CccEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence 48999999999999999999996 999999999
No 88
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.19 E-value=1.8e-06 Score=70.30 Aligned_cols=34 Identities=50% Similarity=0.732 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHH--HHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRL--SEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L--~~~~g~~VlvLE~G~~~ 65 (146)
|+||||+|+||+++|.+| ++ ++++|+|||+....
T Consensus 1 DviIvGaGpAGlslA~~l~~~~-~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADAR-PGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcC-CCCEEEEEcCCccc
Confidence 899999999999999999 66 59999999998765
No 89
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=98.19 E-value=2.4e-06 Score=69.90 Aligned_cols=36 Identities=47% Similarity=0.708 Sum_probs=32.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
+|++|||+|++|+++|.+|++. |.+|+|||+.+..+
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~-G~~V~viEk~~~iG 37 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQL-NKRVLVVEKRNHIG 37 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCeEEEEecCCCCC
Confidence 6999999999999999999986 99999999976554
No 90
>KOG1298|consensus
Probab=98.19 E-value=1.9e-06 Score=70.41 Aligned_cols=39 Identities=41% Similarity=0.542 Sum_probs=34.8
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
....+|+||||+|.+|+.+|+.|+++ |+||.||||.-..
T Consensus 42 ~~~~~DvIIVGAGV~GsaLa~~L~kd-GRrVhVIERDl~E 80 (509)
T KOG1298|consen 42 NDGAADVIIVGAGVAGSALAYALAKD-GRRVHVIERDLSE 80 (509)
T ss_pred cCCcccEEEECCcchHHHHHHHHhhC-CcEEEEEeccccc
Confidence 34578999999999999999999997 9999999997543
No 91
>PRK06847 hypothetical protein; Provisional
Probab=98.18 E-value=2.7e-06 Score=68.46 Aligned_cols=37 Identities=30% Similarity=0.311 Sum_probs=33.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
+..|++|||+|++|+++|..|++. |.+|+|+|+.+..
T Consensus 3 ~~~~V~IVGaG~aGl~~A~~L~~~-g~~v~v~E~~~~~ 39 (375)
T PRK06847 3 AVKKVLIVGGGIGGLSAAIALRRA-GIAVDLVEIDPEW 39 (375)
T ss_pred CcceEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCCC
Confidence 467999999999999999999996 9999999998653
No 92
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=98.18 E-value=2.1e-06 Score=74.41 Aligned_cols=36 Identities=33% Similarity=0.473 Sum_probs=33.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+.||+||||+|..|+.+|++|+++ |.+|+|||+++.
T Consensus 70 ~~~DVvVIGGGi~Ga~~A~~lA~r-Gl~V~LvE~~d~ 105 (627)
T PLN02464 70 EPLDVLVVGGGATGAGVALDAATR-GLRVGLVEREDF 105 (627)
T ss_pred CccCEEEECCCHHHHHHHHHHHhC-CCEEEEEecccc
Confidence 459999999999999999999996 999999999854
No 93
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.18 E-value=2.2e-06 Score=71.39 Aligned_cols=34 Identities=29% Similarity=0.468 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
||+||||+|++|..+|.++++. |++|+|+|++..
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~-g~~v~lie~~~~ 34 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAEL-GASVAMVERGPL 34 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHC-CCeEEEEeCCcc
Confidence 7999999999999999999996 999999999653
No 94
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.18 E-value=2e-06 Score=70.05 Aligned_cols=33 Identities=39% Similarity=0.544 Sum_probs=31.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
.+|++|||+|++|+++|..|+++ |++|.|||+.
T Consensus 2 ~~dV~IvGaG~aGl~lA~~L~~~-G~~V~l~E~~ 34 (387)
T COG0654 2 MLDVAIVGAGPAGLALALALARA-GLDVTLLERA 34 (387)
T ss_pred CCCEEEECCCHHHHHHHHHHHhC-CCcEEEEccC
Confidence 57999999999999999999997 9999999998
No 95
>PRK06834 hypothetical protein; Provisional
Probab=98.17 E-value=2.7e-06 Score=71.64 Aligned_cols=36 Identities=28% Similarity=0.484 Sum_probs=33.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
..+|++|||+|++|+++|..|+++ |.+|+|||+.+.
T Consensus 2 ~~~dVlIVGaGp~Gl~lA~~La~~-G~~v~vlEr~~~ 37 (488)
T PRK06834 2 TEHAVVIAGGGPTGLMLAGELALA-GVDVAIVERRPN 37 (488)
T ss_pred CcceEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCC
Confidence 368999999999999999999996 999999999765
No 96
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=98.17 E-value=2.7e-06 Score=71.29 Aligned_cols=36 Identities=31% Similarity=0.556 Sum_probs=33.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
-|+||||+|.+|+++|..|+++ |++|+|+|+.+..+
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~-G~~v~vlE~~~~~G 37 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKR-GYRVTLLEQHAQPG 37 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCCC
Confidence 5899999999999999999996 99999999987764
No 97
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.16 E-value=3.5e-06 Score=71.52 Aligned_cols=38 Identities=37% Similarity=0.471 Sum_probs=35.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...+|++|||+|++|+++|..|++. |.+|+|||+.+..
T Consensus 8 ~~~~dV~IVGaGp~Gl~lA~~L~~~-G~~v~v~Er~~~~ 45 (538)
T PRK06183 8 AHDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLERWPTL 45 (538)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 5689999999999999999999996 9999999998754
No 98
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.16 E-value=2.9e-06 Score=71.85 Aligned_cols=37 Identities=27% Similarity=0.391 Sum_probs=33.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
+.++|+||||+| +|+.+|.++++. |.+|+|||+.+..
T Consensus 5 d~~~DVvVVG~G-aGl~aA~~aa~~-G~~V~vlEk~~~~ 41 (513)
T PRK12837 5 DEEVDVLVAGSG-GGVAGAYTAARE-GLSVALVEATDKF 41 (513)
T ss_pred CCccCEEEECch-HHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 358899999999 999999999996 9999999998764
No 99
>PLN02268 probable polyamine oxidase
Probab=98.16 E-value=3e-06 Score=69.81 Aligned_cols=36 Identities=31% Similarity=0.517 Sum_probs=33.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
.++||||+|.+|+++|+.|.++ |++|+|||+.++.+
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~-g~~v~vlEa~~r~G 36 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDA-SFKVTLLESRDRIG 36 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCCCCC
Confidence 3799999999999999999995 99999999998875
No 100
>PLN02661 Putative thiazole synthesis
Probab=98.15 E-value=2.9e-06 Score=68.85 Aligned_cols=37 Identities=41% Similarity=0.560 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.+|++|||+|++|+.+|+.|+++++.+|+|||++...
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~ 128 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSP 128 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCccc
Confidence 5799999999999999999998568999999997654
No 101
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=98.15 E-value=3e-06 Score=68.20 Aligned_cols=38 Identities=39% Similarity=0.535 Sum_probs=34.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
+.++|++|||+|..|+++|+.|++. |.+|+|+|++...
T Consensus 2 ~~~~~vvVIGgGi~Gls~A~~La~~-G~~V~vie~~~~~ 39 (387)
T COG0665 2 SMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAG 39 (387)
T ss_pred CCcceEEEECCcHHHHHHHHHHHHc-CCEEEEEecCccC
Confidence 4578999999999999999999996 8999999998653
No 102
>PRK07236 hypothetical protein; Provisional
Probab=98.15 E-value=3.4e-06 Score=68.51 Aligned_cols=37 Identities=22% Similarity=0.330 Sum_probs=33.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
++..|++|||+|++|+++|..|+++ |.+|+|+|+.+.
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~ 40 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRA-GWDVDVFERSPT 40 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhC-CCCEEEEecCCC
Confidence 4568999999999999999999996 999999999864
No 103
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=3e-06 Score=67.56 Aligned_cols=35 Identities=37% Similarity=0.645 Sum_probs=31.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~ 63 (146)
+.||++|||+||+|+.+|..+++. +.+ ++|+|++.
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~-~l~~~li~~~~~ 37 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARA-GLKVVLILEGGE 37 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHc-CCCcEEEEecCC
Confidence 579999999999999999999996 877 78888753
No 104
>PTZ00367 squalene epoxidase; Provisional
Probab=98.15 E-value=3e-06 Score=72.72 Aligned_cols=38 Identities=42% Similarity=0.628 Sum_probs=34.3
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
-.+..+|+||||+|++|+++|..|+++ |++|+|+|+..
T Consensus 29 ~~~~~~dViIVGaGiaGlalA~aLar~-G~~V~VlEr~~ 66 (567)
T PTZ00367 29 RTNYDYDVIIVGGSIAGPVLAKALSKQ-GRKVLMLERDL 66 (567)
T ss_pred ccccCccEEEECCCHHHHHHHHHHHhc-CCEEEEEcccc
Confidence 344579999999999999999999996 99999999975
No 105
>PRK06753 hypothetical protein; Provisional
Probab=98.14 E-value=3.1e-06 Score=68.09 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=31.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
|++|||+|++|+++|..|+++ |++|+|+|+.+..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~-g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQ-GHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcc
Confidence 799999999999999999996 9999999998764
No 106
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.14 E-value=3.6e-06 Score=71.72 Aligned_cols=39 Identities=26% Similarity=0.327 Sum_probs=35.0
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-..++|+||||+|.+|+.+|.++++. |.+|+|||++...
T Consensus 13 ~~~~~DVlVIG~G~AGl~AAi~aae~-G~~VilleK~~~~ 51 (541)
T PRK07804 13 WRDAADVVVVGSGVAGLTAALAARRA-GRRVLVVTKAALD 51 (541)
T ss_pred cccccCEEEECccHHHHHHHHHHHHc-CCeEEEEEccCCC
Confidence 34579999999999999999999996 9999999998754
No 107
>PLN02576 protoporphyrinogen oxidase
Probab=98.14 E-value=4.1e-06 Score=70.09 Aligned_cols=40 Identities=28% Similarity=0.332 Sum_probs=34.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
...+|++|||+|.+|+++|++|+++.|++|+|+|+.+..+
T Consensus 10 ~~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvG 49 (496)
T PLN02576 10 ASSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVG 49 (496)
T ss_pred cCCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCC
Confidence 3467999999999999999999983279999999988764
No 108
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=98.13 E-value=3.6e-06 Score=69.16 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=31.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGGDPP 66 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~~~~ 66 (146)
+++|||||.+|+++|+.|+++ | ++|+|+|+.+..+
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~-G~~~~V~vlEa~~~~G 38 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKK-GPDADITLLEASDRLG 38 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHh-CCCCCEEEEEcCCCCc
Confidence 689999999999999999996 6 8999999987654
No 109
>PRK14694 putative mercuric reductase; Provisional
Probab=98.13 E-value=3.4e-06 Score=70.49 Aligned_cols=35 Identities=29% Similarity=0.477 Sum_probs=32.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+||++|||+|++|..+|.+|++. |++|+|+|++.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~-g~~v~lie~~~ 39 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATER-GARVTLIERGT 39 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEEccc
Confidence 479999999999999999999996 99999999974
No 110
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.13 E-value=2.8e-06 Score=68.86 Aligned_cols=33 Identities=18% Similarity=0.359 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
+|++|||+|++|+++|..|+++ |++|+|+|+.+
T Consensus 2 ~dV~IvGgG~~Gl~~A~~L~~~-G~~v~l~E~~~ 34 (374)
T PRK06617 2 SNTVILGCGLSGMLTALSFAQK-GIKTTIFESKS 34 (374)
T ss_pred ccEEEECCCHHHHHHHHHHHcC-CCeEEEecCCC
Confidence 6999999999999999999996 99999999874
No 111
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.13 E-value=3.8e-06 Score=68.12 Aligned_cols=37 Identities=30% Similarity=0.425 Sum_probs=33.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...|++|||+|++|+++|..|+++ |.+|+|+|+.+..
T Consensus 3 ~~~~V~IvGaGiaGl~~A~~L~~~-g~~v~v~Er~~~~ 39 (396)
T PRK08163 3 KVTPVLIVGGGIGGLAAALALARQ-GIKVKLLEQAAEI 39 (396)
T ss_pred CCCeEEEECCcHHHHHHHHHHHhC-CCcEEEEeeCccc
Confidence 357999999999999999999996 9999999998654
No 112
>PRK07233 hypothetical protein; Provisional
Probab=98.13 E-value=3.8e-06 Score=68.53 Aligned_cols=35 Identities=37% Similarity=0.506 Sum_probs=32.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
+++|||+|.+|+++|+.|+++ |++|+|||+.+..+
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~-G~~v~vlE~~~~~G 35 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKR-GHEVTVFEADDQLG 35 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEeCCCCC
Confidence 589999999999999999997 99999999998764
No 113
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.13 E-value=4.5e-06 Score=70.96 Aligned_cols=38 Identities=24% Similarity=0.465 Sum_probs=34.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...+||+|||+|++|+++|..|++. |.+|+|||+.+..
T Consensus 21 ~~~~dVlIVGaGpaGl~lA~~L~~~-G~~v~viE~~~~~ 58 (547)
T PRK08132 21 PARHPVVVVGAGPVGLALAIDLAQQ-GVPVVLLDDDDTL 58 (547)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHhC-CCcEEEEeCCCCC
Confidence 3678999999999999999999996 9999999998754
No 114
>PRK13748 putative mercuric reductase; Provisional
Probab=98.12 E-value=3.5e-06 Score=71.66 Aligned_cols=35 Identities=31% Similarity=0.443 Sum_probs=32.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
..||+||||+|++|..+|.+|++. |++|+|+|++.
T Consensus 97 ~~~DvvVIG~GpaG~~aA~~~~~~-G~~v~lie~~~ 131 (561)
T PRK13748 97 RPLHVAVIGSGGAAMAAALKAVEQ-GARVTLIERGT 131 (561)
T ss_pred CCCCEEEECcCHHHHHHHHHHHhC-CCeEEEEecCc
Confidence 469999999999999999999997 99999999973
No 115
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.12 E-value=3.8e-06 Score=71.62 Aligned_cols=35 Identities=40% Similarity=0.567 Sum_probs=33.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.++||||||+|.+|+.+|.+++++ |.+|+|||+++
T Consensus 3 ~~~DVvVVG~G~AGl~AAl~Aa~~-G~~VivlEK~~ 37 (549)
T PRK12834 3 MDADVIVVGAGLAGLVAAAELADA-GKRVLLLDQEN 37 (549)
T ss_pred ccCCEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCC
Confidence 578999999999999999999996 99999999988
No 116
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.12 E-value=4.7e-06 Score=68.81 Aligned_cols=34 Identities=29% Similarity=0.310 Sum_probs=31.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~~ 65 (146)
||||||+|.+|+.+|.+++++ | .+|+|||+.+..
T Consensus 1 DVvVVG~G~AGl~AA~~aa~~-G~~~V~vlEk~~~~ 35 (439)
T TIGR01813 1 DVVVVGSGFAGLSAALSAKKA-GAANVVLLEKMPVI 35 (439)
T ss_pred CEEEECCCHHHHHHHHHHHHc-CCccEEEEecCCCC
Confidence 899999999999999999996 9 999999998764
No 117
>PRK07588 hypothetical protein; Provisional
Probab=98.11 E-value=3.7e-06 Score=68.27 Aligned_cols=34 Identities=32% Similarity=0.352 Sum_probs=31.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
|++|||+|++|+++|..|+++ |++|+|+|+.+..
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~-G~~v~v~E~~~~~ 35 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRY-GHEPTLIERAPEL 35 (391)
T ss_pred eEEEECccHHHHHHHHHHHHC-CCceEEEeCCCCc
Confidence 899999999999999999996 9999999998654
No 118
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=98.11 E-value=4.4e-06 Score=70.64 Aligned_cols=38 Identities=39% Similarity=0.532 Sum_probs=33.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD 64 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~ 64 (146)
++++|+||||||..|+++|++|++. ++++|+|||+.+.
T Consensus 43 ~~~~DVvIIGGGI~G~a~A~~La~~~~~~~V~VlEk~~~ 81 (497)
T PTZ00383 43 SDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIERRSD 81 (497)
T ss_pred CCcccEEEECccHHHHHHHHHHHhhCCCCEEEEEecCcc
Confidence 3579999999999999999999995 3479999999864
No 119
>PLN02697 lycopene epsilon cyclase
Probab=98.11 E-value=3.4e-06 Score=71.82 Aligned_cols=36 Identities=31% Similarity=0.469 Sum_probs=32.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
+..||++|||+|++|+.+|.+|+++ |++|+|||++.
T Consensus 106 ~~~~DVvIVGaGPAGLalA~~Lak~-Gl~V~LIe~~~ 141 (529)
T PLN02697 106 DGTLDLVVIGCGPAGLALAAESAKL-GLNVGLIGPDL 141 (529)
T ss_pred cCcccEEEECcCHHHHHHHHHHHhC-CCcEEEecCcc
Confidence 3469999999999999999999996 99999999863
No 120
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=98.11 E-value=3.9e-06 Score=70.93 Aligned_cols=39 Identities=28% Similarity=0.515 Sum_probs=34.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~ 65 (146)
..++|++|||+|..|+++|++|++. ++++|+||||....
T Consensus 3 ~~~~DVvIIGgGIiG~slA~~L~~~~~g~~V~VlEk~~~~ 42 (494)
T PRK05257 3 ESKTDVVLIGGGIMSATLGTLLKELEPEWSITMFERLDGV 42 (494)
T ss_pred CccceEEEECcHHHHHHHHHHHHHhCCCCeEEEEEcCCch
Confidence 3468999999999999999999984 58999999998653
No 121
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=98.11 E-value=3.8e-06 Score=70.76 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~ 64 (146)
+|++|||+|..|+++|++|++. ++++|+|||++..
T Consensus 1 ~DVvIIGgGI~G~a~A~~L~~~~~g~~V~VlEk~~~ 36 (483)
T TIGR01320 1 TDVVLIGAGIMSATLGVLLRELEPNWSITLIERLDA 36 (483)
T ss_pred CcEEEECchHHHHHHHHHHHHhCCCCeEEEEEcCCc
Confidence 6999999999999999999984 6999999999764
No 122
>PRK06996 hypothetical protein; Provisional
Probab=98.11 E-value=3.8e-06 Score=68.61 Aligned_cols=39 Identities=33% Similarity=0.501 Sum_probs=33.1
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHhC---CCcEEEEecCCC
Q psy3408 26 ISGKFDFIIVGGGSAGAVLANRLSEEL---DWRVLLIEAGGD 64 (146)
Q Consensus 26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~---g~~VlvLE~G~~ 64 (146)
..+.+|++|||+|++|+++|..|+++. |++|+|+|+.+.
T Consensus 8 ~~~~~dv~IvGgGpaG~~~A~~L~~~g~~~g~~v~l~e~~~~ 49 (398)
T PRK06996 8 AAPDFDIAIVGAGPVGLALAGWLARRSATRALSIALIDAREP 49 (398)
T ss_pred cCCCCCEEEECcCHHHHHHHHHHhcCCCcCCceEEEecCCCC
Confidence 345789999999999999999999962 257999999753
No 123
>PTZ00058 glutathione reductase; Provisional
Probab=98.10 E-value=3.9e-06 Score=71.92 Aligned_cols=36 Identities=33% Similarity=0.563 Sum_probs=33.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
..+||+||||+|++|..+|.++++. |++|+|||++.
T Consensus 46 ~~~yDvvVIG~G~aG~~aA~~aa~~-G~~ValIEk~~ 81 (561)
T PTZ00058 46 RMVYDLIVIGGGSGGMAAARRAARN-KAKVALVEKDY 81 (561)
T ss_pred CccccEEEECcCHHHHHHHHHHHHc-CCeEEEEeccc
Confidence 3579999999999999999999996 99999999863
No 124
>PRK06126 hypothetical protein; Provisional
Probab=98.10 E-value=4.8e-06 Score=70.66 Aligned_cols=38 Identities=29% Similarity=0.465 Sum_probs=34.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...+||+|||+|++|+++|..|+++ |++|+|+|+.+..
T Consensus 5 ~~~~~VlIVGaGpaGL~~Al~La~~-G~~v~viEr~~~~ 42 (545)
T PRK06126 5 TSETPVLIVGGGPVGLALALDLGRR-GVDSILVERKDGT 42 (545)
T ss_pred CccCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCCCCC
Confidence 3468999999999999999999997 9999999998653
No 125
>PLN02507 glutathione reductase
Probab=98.09 E-value=4.4e-06 Score=70.53 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=31.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~ 61 (146)
+.+||+||||+|++|..+|.++++. |++|+|+|+
T Consensus 23 ~~~yDvvVIG~GpaG~~aA~~a~~~-G~~V~liE~ 56 (499)
T PLN02507 23 HYDFDLFVIGAGSGGVRAARFSANF-GAKVGICEL 56 (499)
T ss_pred ccccCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 4579999999999999999999996 999999996
No 126
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=98.08 E-value=4.2e-06 Score=70.24 Aligned_cols=34 Identities=29% Similarity=0.498 Sum_probs=31.6
Q ss_pred EEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
+||||+|.+|+++|..|+++ |++|+|||+.+..+
T Consensus 1 vvVIGaG~~GL~aA~~La~~-G~~V~VlE~~~~~G 34 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAA-GIPVTVVEQRDKPG 34 (502)
T ss_pred CEEECcCHHHHHHHHHHHhC-CCcEEEEECCCCCc
Confidence 58999999999999999996 99999999988764
No 127
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.08 E-value=4.6e-06 Score=69.86 Aligned_cols=33 Identities=36% Similarity=0.592 Sum_probs=31.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~ 61 (146)
..||+||||+|++|+.+|.++++. |++|+|||+
T Consensus 3 ~~~DviIIG~G~aG~~aA~~~~~~-g~~v~lie~ 35 (475)
T PRK06327 3 KQFDVVVIGAGPGGYVAAIRAAQL-GLKVACIEA 35 (475)
T ss_pred cceeEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence 479999999999999999999996 999999998
No 128
>PRK11445 putative oxidoreductase; Provisional
Probab=98.08 E-value=4.8e-06 Score=67.06 Aligned_cols=34 Identities=32% Similarity=0.533 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.||++|||+|++|+++|..|++ . .+|+|||+.+.
T Consensus 1 ~~dV~IvGaGpaGl~~A~~La~-~-~~V~liE~~~~ 34 (351)
T PRK11445 1 HYDVAIIGLGPAGSALARLLAG-K-MKVIAIDKKHQ 34 (351)
T ss_pred CceEEEECCCHHHHHHHHHHhc-c-CCEEEEECCCc
Confidence 3799999999999999999998 4 89999999864
No 129
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.07 E-value=5.2e-06 Score=71.42 Aligned_cols=39 Identities=21% Similarity=0.371 Sum_probs=34.9
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-+.++|+||||+|.+|+.+|.+++++ |.+|+|||+++..
T Consensus 8 ~~~~~DVvVVG~G~AGl~AA~~aae~-G~~VivlEk~~~~ 46 (584)
T PRK12835 8 FDREVDVLVVGSGGGGMTAALTAAAR-GLDTLVVEKSAHF 46 (584)
T ss_pred ccCcCCEEEECccHHHHHHHHHHHHC-CCcEEEEEcCCCC
Confidence 34579999999999999999999996 9999999998754
No 130
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=98.06 E-value=5.6e-06 Score=67.45 Aligned_cols=35 Identities=51% Similarity=0.783 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~ 65 (146)
|++|||+|++|+.+|.+|+++ +|++|+|||+++..
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~ 36 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTI 36 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCC
Confidence 899999999999999999983 59999999998743
No 131
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.05 E-value=9e-06 Score=69.72 Aligned_cols=37 Identities=27% Similarity=0.404 Sum_probs=33.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
+.++|+||||+| +|+.+|.+.+++ |.+|+|||+.+..
T Consensus 14 d~e~DvvvvG~G-~G~~aA~~a~~~-G~~v~v~Ek~~~~ 50 (564)
T PRK12845 14 DTTVDLLVVGSG-TGMAAALAAHEL-GLSVLIVEKSSYV 50 (564)
T ss_pred CceeCEEEECCc-HHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 559999999999 899999999996 9999999998654
No 132
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.05 E-value=6.7e-06 Score=70.50 Aligned_cols=37 Identities=19% Similarity=0.241 Sum_probs=33.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|+||||+|.+|+.+|.+++++ |.+|+|||+....
T Consensus 8 ~~~DVvVVG~G~aGl~AA~~aa~~-G~~v~llEk~~~~ 44 (574)
T PRK12842 8 LTCDVLVIGSGAGGLSAAITARKL-GLDVVVLEKEPVF 44 (574)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 478999999999999999999996 9999999998754
No 133
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=98.05 E-value=6.2e-06 Score=68.25 Aligned_cols=38 Identities=32% Similarity=0.461 Sum_probs=33.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhC---CCcEEEEecCCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEEL---DWRVLLIEAGGDPP 66 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~---g~~VlvLE~G~~~~ 66 (146)
..|++|||+|.+|+++|++|+++. |++|+|+|+.+..+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~G 42 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVG 42 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCc
Confidence 368999999999999999999842 89999999988754
No 134
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.04 E-value=5.4e-06 Score=69.98 Aligned_cols=32 Identities=28% Similarity=0.604 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~ 61 (146)
.||+||||+|++|..+|.++++. |++|+|||+
T Consensus 5 ~yDviVIG~GpaG~~AA~~aa~~-G~~V~lie~ 36 (499)
T PTZ00052 5 MYDLVVIGGGSGGMAAAKEAAAH-GKKVALFDY 36 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHhC-CCeEEEEec
Confidence 58999999999999999999996 999999996
No 135
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.04 E-value=8.5e-06 Score=68.29 Aligned_cols=40 Identities=25% Similarity=0.341 Sum_probs=35.5
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
.....+++|||+|++|+.+|.+|.+. |++|+|+|+++..+
T Consensus 7 ~~~~~~VaIIGAG~aGL~aA~~l~~~-G~~v~vfE~~~~vG 46 (461)
T PLN02172 7 PINSQHVAVIGAGAAGLVAARELRRE-GHTVVVFEREKQVG 46 (461)
T ss_pred CCCCCCEEEECCcHHHHHHHHHHHhc-CCeEEEEecCCCCc
Confidence 34468999999999999999999996 99999999987654
No 136
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=98.04 E-value=5.7e-06 Score=71.97 Aligned_cols=35 Identities=46% Similarity=0.662 Sum_probs=32.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+|++|||+|.+|+++|++|+++ |++|+|||++..
T Consensus 260 ~~dVvIIGaGIaG~s~A~~La~~-G~~V~VlE~~~~ 294 (662)
T PRK01747 260 ARDAAIIGGGIAGAALALALARR-GWQVTLYEADEA 294 (662)
T ss_pred CCCEEEECccHHHHHHHHHHHHC-CCeEEEEecCCC
Confidence 47999999999999999999997 999999999853
No 137
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=98.04 E-value=6.3e-06 Score=67.26 Aligned_cols=33 Identities=21% Similarity=0.357 Sum_probs=30.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
|++|||+|..|+++|.+|+++ |++|+|||++..
T Consensus 2 ~v~IVG~Gi~Gls~A~~l~~~-g~~V~vle~~~~ 34 (416)
T PRK00711 2 RVVVLGSGVIGVTSAWYLAQA-GHEVTVIDRQPG 34 (416)
T ss_pred EEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCCc
Confidence 899999999999999999996 999999999854
No 138
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.03 E-value=8.6e-06 Score=70.52 Aligned_cols=38 Identities=26% Similarity=0.309 Sum_probs=34.3
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..++||||||+|.||+.+|.+++++ |.+|+|||++...
T Consensus 27 ~~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~lveK~~~~ 64 (617)
T PTZ00139 27 DHTYDAVVVGAGGAGLRAALGLVEL-GYKTACISKLFPT 64 (617)
T ss_pred ccccCEEEECccHHHHHHHHHHHHc-CCcEEEEeccCCC
Confidence 3578999999999999999999996 9999999998654
No 139
>PRK07538 hypothetical protein; Provisional
Probab=98.02 E-value=7.4e-06 Score=67.17 Aligned_cols=35 Identities=31% Similarity=0.516 Sum_probs=32.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.|++|||+|++|+++|..|+++ |++|+|+|+.+..
T Consensus 1 ~dV~IVGaG~aGl~~A~~L~~~-G~~v~v~E~~~~~ 35 (413)
T PRK07538 1 MKVLIAGGGIGGLTLALTLHQR-GIEVVVFEAAPEL 35 (413)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEEcCCcc
Confidence 3899999999999999999996 9999999998653
No 140
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.01 E-value=7.4e-06 Score=70.53 Aligned_cols=37 Identities=30% Similarity=0.295 Sum_probs=33.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..+||||||+|.||+.+|.+++++ |.+|+|||++...
T Consensus 2 ~~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lieK~~~~ 38 (589)
T PRK08641 2 AKGKVIVVGGGLAGLMATIKAAEA-GVHVDLFSLVPVK 38 (589)
T ss_pred CCccEEEECchHHHHHHHHHHHHc-CCcEEEEEccCCC
Confidence 356999999999999999999996 9999999987653
No 141
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.01 E-value=8.9e-06 Score=59.87 Aligned_cols=33 Identities=33% Similarity=0.572 Sum_probs=26.4
Q ss_pred EEECCCHHHHHHHHHHHHhCCCc-EEEEecCCCCC
Q psy3408 33 IIVGGGSAGAVLANRLSEELDWR-VLLIEAGGDPP 66 (146)
Q Consensus 33 iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~~~~ 66 (146)
+|||+|++|+.+|..|.+. |.+ |+|||+++..+
T Consensus 1 ~IIGaG~aGl~~a~~l~~~-g~~~v~v~e~~~~~G 34 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLER-GIDPVVVLERNDRPG 34 (203)
T ss_dssp EEE--SHHHHHHHHHHHHT-T---EEEEESSSSST
T ss_pred CEECcCHHHHHHHHHHHhC-CCCcEEEEeCCCCCC
Confidence 6999999999999999997 888 99999997754
No 142
>PRK14727 putative mercuric reductase; Provisional
Probab=98.00 E-value=1e-05 Score=67.91 Aligned_cols=38 Identities=29% Similarity=0.331 Sum_probs=34.1
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
....||+||||+|++|..+|.+|++. |++|+|+|++..
T Consensus 13 ~~~~~dvvvIG~G~aG~~~a~~~~~~-g~~v~~ie~~~~ 50 (479)
T PRK14727 13 SKLQLHVAIIGSGSAAFAAAIKAAEH-GARVTIIEGADV 50 (479)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCc
Confidence 34579999999999999999999996 999999999744
No 143
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.00 E-value=7.5e-06 Score=71.00 Aligned_cols=37 Identities=24% Similarity=0.334 Sum_probs=33.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..+||||||+|.||+.+|.+++++ |.+|+|||++...
T Consensus 7 ~~~DVvVIG~G~AGl~AAl~Aae~-G~~V~lieK~~~~ 43 (626)
T PRK07803 7 HSYDVVVIGAGGAGLRAAIEARER-GLRVAVVCKSLFG 43 (626)
T ss_pred eeecEEEECcCHHHHHHHHHHHHC-CCCEEEEeccCCC
Confidence 468999999999999999999996 9999999998643
No 144
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.00 E-value=7.6e-06 Score=70.14 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=33.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.++||||||+|.+|+.+|.+++++ |.+|+|||+++.
T Consensus 4 ~~~DVvVVG~G~AGl~AAl~Aae~-G~~V~lveK~~~ 39 (566)
T PRK06452 4 IEYDAVVIGGGLAGLMSAHEIASA-GFKVAVISKVFP 39 (566)
T ss_pred ccCcEEEECccHHHHHHHHHHHHC-CCcEEEEEccCC
Confidence 468999999999999999999996 999999999864
No 145
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.00 E-value=7.9e-06 Score=69.13 Aligned_cols=35 Identities=29% Similarity=0.549 Sum_probs=32.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHH-hCCCcEEEEec
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEA 61 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~ 61 (146)
+..+|++|||||.+|+++|+.|++ .++++|+||||
T Consensus 4 ~~~~DvvIIGgGI~G~sla~~L~~~~~~~~V~vlEr 39 (497)
T PRK13339 4 SESKDVVLVGAGILSTTFGVLLKELDPDWNIEVVER 39 (497)
T ss_pred CccCCEEEECchHHHHHHHHHHHhCCCCCeEEEEEc
Confidence 457899999999999999999998 35899999999
No 146
>PRK10262 thioredoxin reductase; Provisional
Probab=97.99 E-value=9.5e-06 Score=64.35 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=32.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
...+|++|||+|++|+.+|..|++. |++|+++|+.
T Consensus 4 ~~~~~vvIIGgGpaGl~aA~~l~~~-g~~~~~ie~~ 38 (321)
T PRK10262 4 TKHSKLLILGSGPAGYTAAVYAARA-NLQPVLITGM 38 (321)
T ss_pred CCcCCEEEECCCHHHHHHHHHHHHC-CCCeEEEEee
Confidence 4679999999999999999999996 9999999864
No 147
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.99 E-value=8.7e-06 Score=70.11 Aligned_cols=37 Identities=24% Similarity=0.356 Sum_probs=33.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++||||||+|.||+.+|.++++. |.+|+|||++...
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~Aa~~-G~~V~lleK~~~~ 42 (588)
T PRK08958 6 REFDAVVIGAGGAGMRAALQISQS-GQSCALLSKVFPT 42 (588)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCCC
Confidence 468999999999999999999996 9999999998653
No 148
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.99 E-value=9.2e-06 Score=69.50 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=33.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|+||||+|.+|+.+|.+++++ |.+|+|||+.+..
T Consensus 5 ~~~DvvIiG~G~aGl~aA~~~a~~-G~~v~liEk~~~~ 41 (557)
T PRK12844 5 ETYDVVVVGSGGGGMCAALAAADS-GLEPLIVEKQDKV 41 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 489999999999999999999996 9999999997553
No 149
>PLN02546 glutathione reductase
Probab=97.99 E-value=8e-06 Score=69.98 Aligned_cols=33 Identities=24% Similarity=0.285 Sum_probs=31.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~ 61 (146)
.+||++|||+|++|..+|.++++. |++|+|+|+
T Consensus 78 ~~yDvvVIG~GpaG~~aA~~aa~~-G~~V~liE~ 110 (558)
T PLN02546 78 YDFDLFTIGAGSGGVRASRFASNF-GASAAVCEL 110 (558)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCeEEEEec
Confidence 369999999999999999999996 999999996
No 150
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.98 E-value=8.6e-06 Score=70.25 Aligned_cols=36 Identities=25% Similarity=0.351 Sum_probs=33.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.++||||||+|.+|+.+|.++++. |.+|+|||++..
T Consensus 11 ~~~DVvVIG~G~AGl~AAl~Aa~~-G~~V~lveK~~~ 46 (598)
T PRK09078 11 HKYDVVVVGAGGAGLRATLGMAEA-GLKTACITKVFP 46 (598)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEEccCC
Confidence 478999999999999999999996 999999999864
No 151
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=97.98 E-value=9.1e-06 Score=65.70 Aligned_cols=38 Identities=37% Similarity=0.581 Sum_probs=34.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...+|+||||+|.+|+++|.+|+++ |++|+|||+....
T Consensus 3 ~~~~dvivvgaglaglvaa~elA~a-G~~V~ildQEgeq 40 (552)
T COG3573 3 GLTADVIVVGAGLAGLVAAAELADA-GKRVLILDQEGEQ 40 (552)
T ss_pred cccccEEEECccHHHHHHHHHHHhc-CceEEEEcccccc
Confidence 3478999999999999999999996 9999999997664
No 152
>PRK06175 L-aspartate oxidase; Provisional
Probab=97.98 E-value=8.3e-06 Score=67.71 Aligned_cols=36 Identities=33% Similarity=0.447 Sum_probs=31.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++||||||+|.+|+.+|.+++ + |.+|+|||+++..
T Consensus 3 ~~~DVvVVG~G~AGl~AA~~a~-~-G~~V~lleK~~~~ 38 (433)
T PRK06175 3 LYADVLIVGSGVAGLYSALNLR-K-DLKILMVSKGKLN 38 (433)
T ss_pred ccccEEEECchHHHHHHHHHhc-c-CCCEEEEecCCCC
Confidence 4689999999999999999974 4 8999999998764
No 153
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=97.98 E-value=1e-05 Score=67.10 Aligned_cols=35 Identities=40% Similarity=0.600 Sum_probs=32.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
++||++|||+|.+|+.+|..|+++ |++|+|||++.
T Consensus 1 ~~~DviIIG~G~aGl~aA~~la~~-g~~v~vi~~~~ 35 (422)
T PRK05329 1 MKFDVLVIGGGLAGLTAALAAAEA-GKRVALVAKGQ 35 (422)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEECCC
Confidence 368999999999999999999997 99999999974
No 154
>PRK08401 L-aspartate oxidase; Provisional
Probab=97.97 E-value=9.5e-06 Score=67.90 Aligned_cols=34 Identities=35% Similarity=0.498 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+||||||+|.+|+.+|.+++++ |.+|+|||++..
T Consensus 2 ~DVvVVGaG~AGl~AAi~aae~-G~~V~liek~~~ 35 (466)
T PRK08401 2 MKVGIVGGGLAGLTAAISLAKK-GFDVTIIGPGIK 35 (466)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCeEEEEeCCCC
Confidence 6999999999999999999996 999999999854
No 155
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.97 E-value=9.4e-06 Score=69.91 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=32.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
..+||+|||+|.+|+.+|.++++. |.+|+|||++..
T Consensus 11 ~~~DVlVIG~G~AGl~AAi~Aa~~-G~~V~vleK~~~ 46 (591)
T PRK07057 11 RKFDVVIVGAGGSGMRASLQLARA-GLSVAVLSKVFP 46 (591)
T ss_pred ccCCEEEECccHHHHHHHHHHHHC-CCcEEEEeccCC
Confidence 468999999999999999999996 999999999754
No 156
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=97.97 E-value=1.2e-05 Score=69.80 Aligned_cols=39 Identities=33% Similarity=0.426 Sum_probs=34.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..++||+|||+|++|+++|..|++.+|.+|.|||+.+..
T Consensus 30 ~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~~ 68 (634)
T PRK08294 30 PDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGR 68 (634)
T ss_pred CCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCCC
Confidence 458899999999999999999999229999999998654
No 157
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.97 E-value=1e-05 Score=69.49 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=32.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~ 64 (146)
.++||||||+|.+|+.+|.+++++ ++.+|+|||++..
T Consensus 2 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~V~vleK~~~ 39 (575)
T PRK05945 2 LEHDVVIVGGGLAGCRAALEIKRLDPSLDVAVVAKTHP 39 (575)
T ss_pred CcccEEEECccHHHHHHHHHHHHhcCCCcEEEEeccCC
Confidence 468999999999999999999985 2489999999865
No 158
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=97.96 E-value=9.8e-06 Score=70.41 Aligned_cols=37 Identities=30% Similarity=0.343 Sum_probs=33.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++||||||+|.||+.+|.+++++ |.+|+|||++...
T Consensus 49 ~~~DVlVIG~G~AGl~AAl~Aae~-G~~VilveK~~~~ 85 (635)
T PLN00128 49 HTYDAVVVGAGGAGLRAAIGLSEH-GFNTACITKLFPT 85 (635)
T ss_pred eecCEEEECccHHHHHHHHHHHhc-CCcEEEEEcCCCC
Confidence 358999999999999999999996 9999999998653
No 159
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=97.96 E-value=9.7e-06 Score=69.28 Aligned_cols=33 Identities=27% Similarity=0.298 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
||||||+|.+|+.+|.+++++ |.+|+|||+++.
T Consensus 1 DVlVVG~G~AGl~AA~~aae~-G~~V~lleK~~~ 33 (566)
T TIGR01812 1 DVVIVGAGLAGLRAAVEAAKA-GLNTAVISKVYP 33 (566)
T ss_pred CEEEECccHHHHHHHHHHHHC-CCcEEEEeccCC
Confidence 899999999999999999996 999999999864
No 160
>PLN02815 L-aspartate oxidase
Probab=97.95 E-value=1.1e-05 Score=69.51 Aligned_cols=40 Identities=30% Similarity=0.475 Sum_probs=34.3
Q ss_pred cccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 24 DNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 24 ~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
+....++||||||+|.+|+.+|.++++. | +|+|||+++..
T Consensus 24 ~~~~~~~DVlVVG~G~AGl~AAl~Aae~-G-~VvlleK~~~~ 63 (594)
T PLN02815 24 DESTKYFDFLVIGSGIAGLRYALEVAEY-G-TVAIITKDEPH 63 (594)
T ss_pred cCcccccCEEEECccHHHHHHHHHHhhC-C-CEEEEECCCCC
Confidence 3334578999999999999999999996 8 89999998764
No 161
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=97.95 E-value=1.7e-05 Score=66.18 Aligned_cols=41 Identities=22% Similarity=0.362 Sum_probs=36.1
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCCCCC
Q psy3408 25 NISGKFDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGGDPP 66 (146)
Q Consensus 25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~~~~ 66 (146)
...+++|++|||+|++|+.+|++|.++ |.. ++|+||..+.+
T Consensus 4 ~~~~~~~v~IIGaG~sGlaaa~~L~~~-g~~~~~i~Ek~~~~G 45 (443)
T COG2072 4 GVATHTDVAIIGAGQSGLAAAYALKQA-GVPDFVIFEKRDDVG 45 (443)
T ss_pred CcCCcccEEEECCCHHHHHHHHHHHHc-CCCcEEEEEccCCcC
Confidence 345689999999999999999999996 777 99999997654
No 162
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=97.95 E-value=1.2e-05 Score=67.39 Aligned_cols=37 Identities=32% Similarity=0.579 Sum_probs=33.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
..+||+||||+|++|-.+|.++++. |++|+++|++..
T Consensus 2 ~~~yDvvVIG~GpaG~~aA~raa~~-G~kvalvE~~~~ 38 (454)
T COG1249 2 MKEYDVVVIGAGPAGYVAAIRAAQL-GLKVALVEKGER 38 (454)
T ss_pred CccccEEEECCCHHHHHHHHHHHhC-CCCEEEEeecCC
Confidence 4589999999999999999999996 888999999953
No 163
>PRK08275 putative oxidoreductase; Provisional
Probab=97.95 E-value=1.2e-05 Score=68.78 Aligned_cols=37 Identities=35% Similarity=0.572 Sum_probs=33.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~ 64 (146)
.++||||||+|.||+.+|.++++. +|.+|+|||+++.
T Consensus 8 ~~~DVlVIG~G~AGl~AAi~aa~~g~g~~VilveK~~~ 45 (554)
T PRK08275 8 VETDILVIGGGTAGPMAAIKAKERNPALRVLLLEKANV 45 (554)
T ss_pred EecCEEEECcCHHHHHHHHHHHHhCCCCeEEEEeCCCC
Confidence 468999999999999999999984 3689999999875
No 164
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.93 E-value=1.6e-05 Score=69.29 Aligned_cols=36 Identities=28% Similarity=0.437 Sum_probs=33.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+..+++|||+|++|+++|..|+++ |.+|.|+|+.+
T Consensus 79 ~~~~~VlIVGgGIaGLalAlaL~r~-Gi~V~V~Er~~ 114 (668)
T PLN02927 79 KKKSRVLVAGGGIGGLVFALAAKKK-GFDVLVFEKDL 114 (668)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEeccc
Confidence 4578999999999999999999997 99999999975
No 165
>PRK05868 hypothetical protein; Validated
Probab=97.93 E-value=1.4e-05 Score=64.95 Aligned_cols=34 Identities=21% Similarity=0.342 Sum_probs=31.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
|++|||+|++|+++|..|+++ |++|+|+|+.+..
T Consensus 3 ~V~IvGgG~aGl~~A~~L~~~-G~~v~viE~~~~~ 36 (372)
T PRK05868 3 TVVVSGASVAGTAAAYWLGRH-GYSVTMVERHPGL 36 (372)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCCEEEEcCCCCC
Confidence 899999999999999999996 9999999998764
No 166
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=97.93 E-value=1.6e-05 Score=68.05 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=34.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..++|++|||+|.+|+.+|.+++++ |.+|+|||+.+..
T Consensus 5 ~~~~DvvVvG~G~aG~~aA~~aa~~-G~~v~llEk~~~~ 42 (557)
T PRK07843 5 VQEYDVVVVGSGAAGMVAALTAAHR-GLSTVVVEKAPHY 42 (557)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHC-CCCEEEEeCCCCC
Confidence 3478999999999999999999996 9999999997653
No 167
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.93 E-value=1.4e-05 Score=58.50 Aligned_cols=33 Identities=39% Similarity=0.618 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
|++|||+|++|+.+|.+|++. +.+|+|+|+.+.
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~-~~~v~ii~~~~~ 33 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARP-GAKVLIIEKSPG 33 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-TSEEEEESSSSH
T ss_pred CEEEEecHHHHHHHHHHHhcC-CCeEEEEecccc
Confidence 799999999999999999985 999999988653
No 168
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.93 E-value=1.2e-05 Score=68.91 Aligned_cols=36 Identities=31% Similarity=0.413 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCC---CcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELD---WRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g---~~VlvLE~G~~~ 65 (146)
++||+|||+|.+|+.+|.+++++ | .+|+|||++...
T Consensus 5 ~~DVlVVG~G~AGl~AA~~Aa~~-G~~~~~V~lleK~~~~ 43 (577)
T PRK06069 5 KYDVVIVGSGLAGLRAAVAAAER-SGGKLSVAVVSKTQPM 43 (577)
T ss_pred ecCEEEECccHHHHHHHHHHHHh-CCCCCcEEEEEcccCC
Confidence 68999999999999999999996 6 899999998654
No 169
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=97.92 E-value=1.5e-05 Score=66.05 Aligned_cols=39 Identities=33% Similarity=0.443 Sum_probs=35.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
....|+||||+|.+|+++|++|.++ |++|+|||..+..+
T Consensus 5 ~~~~~viivGaGlaGL~AA~eL~ka-G~~v~ilEar~r~G 43 (450)
T COG1231 5 PKTADVIIVGAGLAGLSAAYELKKA-GYQVQILEARDRVG 43 (450)
T ss_pred CCCCcEEEECCchHHHHHHHHHhhc-CcEEEEEeccCCcC
Confidence 4578999999999999999999997 99999999987753
No 170
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=97.92 E-value=1.8e-05 Score=68.08 Aligned_cols=40 Identities=20% Similarity=0.263 Sum_probs=35.3
Q ss_pred ccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 25 ~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
....++|++|||+|.+|+.+|.+++++ |.+|+|||+.+..
T Consensus 8 ~~~~~~dvvvvG~G~aG~~aa~~~~~~-g~~v~~iek~~~~ 47 (581)
T PRK06134 8 PPDLECDVLVIGSGAAGLSAAVTAAWH-GLKVIVVEKDPVF 47 (581)
T ss_pred CCCCccCEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 345589999999999999999999996 9999999997643
No 171
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=97.91 E-value=1.3e-05 Score=69.91 Aligned_cols=37 Identities=16% Similarity=0.205 Sum_probs=33.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..+||||||+|.+|+.+|.+++++ |.+|+|||+.+..
T Consensus 4 ~~~DVlVIG~G~AGl~AAi~Aae~-G~~VivleK~~~~ 40 (657)
T PRK08626 4 IYTDALVIGAGLAGLRVAIAAAQR-GLDTIVLSLVPAK 40 (657)
T ss_pred eeccEEEECccHHHHHHHHHHHHc-CCCEEEEeCCCCC
Confidence 368999999999999999999996 9999999997653
No 172
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=97.91 E-value=1.4e-05 Score=69.14 Aligned_cols=37 Identities=35% Similarity=0.451 Sum_probs=33.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~ 64 (146)
.++||||||+|.||+.+|.++++. +|.+|+|||++..
T Consensus 10 ~~~DVlVIG~G~AGl~AAi~Aae~~~G~~V~lieK~~~ 47 (608)
T PRK06854 10 VDTDILIIGGGMAGCGAAFEAKEWAPDLKVLIVEKANI 47 (608)
T ss_pred eEeCEEEECcCHHHHHHHHHHHHhCCCCeEEEEECCCc
Confidence 468999999999999999999984 3899999999865
No 173
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.91 E-value=1.6e-05 Score=69.21 Aligned_cols=36 Identities=39% Similarity=0.499 Sum_probs=32.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.++||||||+|.+|+.+|.++++. |.+|+|||+...
T Consensus 34 ~~~DVlVVG~G~AGl~AAi~Aae~-G~~VilieK~~~ 69 (640)
T PRK07573 34 RKFDVIVVGTGLAGASAAATLGEL-GYNVKVFCYQDS 69 (640)
T ss_pred cccCEEEECccHHHHHHHHHHHHc-CCcEEEEecCCC
Confidence 368999999999999999999996 999999998544
No 174
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=97.91 E-value=1.9e-05 Score=65.58 Aligned_cols=40 Identities=38% Similarity=0.508 Sum_probs=35.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPP 66 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~~ 66 (146)
++.|||+|||+|..|+++|++|++. |.++|+|||+-+...
T Consensus 1 ~~~~DvvIIGgGI~G~a~a~~Ls~~~p~~~V~llEk~~~~a 41 (429)
T COG0579 1 MMDYDVVIIGGGIMGAATAYELSEYEPDLSVALLEKEDGVA 41 (429)
T ss_pred CCceeEEEECCcHHHHHHHHHHHHhCCCceEEEEEccCccc
Confidence 3579999999999999999999994 349999999988764
No 175
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=97.89 E-value=1.6e-05 Score=67.00 Aligned_cols=35 Identities=26% Similarity=0.438 Sum_probs=31.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
.+||+||||+|++|..+|.++++..|++|+|+|++
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~ 36 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQ 36 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecc
Confidence 46999999999999999999999338999999973
No 176
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.89 E-value=1.8e-05 Score=62.13 Aligned_cols=35 Identities=34% Similarity=0.398 Sum_probs=31.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.+++|||+|++|+++|+.|+++ |.+|+|+|||.-.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~a-G~~vtV~eKg~Gv 36 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREA-GREVTVFEKGRGV 36 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhc-CcEEEEEEcCCCc
Confidence 3689999999999999999997 9999999998653
No 177
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=97.89 E-value=2e-05 Score=65.35 Aligned_cols=35 Identities=26% Similarity=0.308 Sum_probs=31.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
+++|||+|++|+++|++|+++ |++|+|+|+.+..+
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~-G~~v~vlE~~~~~G 35 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADA-GHTPIVLEARDVLG 35 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCCC
Confidence 489999999999999999996 99999999987653
No 178
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=97.87 E-value=1.4e-05 Score=66.40 Aligned_cols=36 Identities=22% Similarity=0.343 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhC-----CCcEEEEecCCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEEL-----DWRVLLIEAGGDPP 66 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~-----g~~VlvLE~G~~~~ 66 (146)
+++|||+|.+|+++|++|+++. +.+|+|||+.+..+
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~G 43 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLG 43 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCcc
Confidence 6999999999999999999851 37999999988764
No 179
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.87 E-value=1.8e-05 Score=66.70 Aligned_cols=33 Identities=30% Similarity=0.628 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
+||+||||+|++|..+|.++++. |++|+++|+.
T Consensus 2 ~yDvvVIG~G~aG~~aA~~aa~~-G~~v~lie~~ 34 (484)
T TIGR01438 2 DYDLIVIGGGSGGLAAAKEAADY-GAKVMLLDFV 34 (484)
T ss_pred ccCEEEECCCHHHHHHHHHHHHC-CCeEEEEecc
Confidence 58999999999999999999996 9999999973
No 180
>PRK06475 salicylate hydroxylase; Provisional
Probab=97.87 E-value=2.1e-05 Score=64.21 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=31.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-+++|||+|++|+++|..|+++ |++|.|+|+.+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~-G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAAR-GWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCcc
Confidence 4799999999999999999996 9999999998653
No 181
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.86 E-value=1.7e-05 Score=67.52 Aligned_cols=35 Identities=31% Similarity=0.358 Sum_probs=31.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.++||||||+|.+|+.+|.++ +. |.+|+|||++..
T Consensus 6 ~~~DVlVVG~G~AGl~AAi~A-~~-G~~VilleK~~~ 40 (543)
T PRK06263 6 MITDVLIIGSGGAGARAAIEA-ER-GKNVVIVSKGLF 40 (543)
T ss_pred eccCEEEECccHHHHHHHHHH-hc-CCCEEEEEccCC
Confidence 368999999999999999999 75 999999999864
No 182
>PLN02568 polyamine oxidase
Probab=97.86 E-value=2.5e-05 Score=66.74 Aligned_cols=38 Identities=29% Similarity=0.487 Sum_probs=33.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCC-----CcEEEEecCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELD-----WRVLLIEAGGDPP 66 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g-----~~VlvLE~G~~~~ 66 (146)
+..|++|||+|.+|+++|.+|++. | ++|+|+|+....+
T Consensus 4 ~~~~v~iiGaG~aGl~aa~~L~~~-g~~~~~~~v~v~E~~~~~G 46 (539)
T PLN02568 4 KKPRIVIIGAGMAGLTAANKLYTS-SAANDMFELTVVEGGDRIG 46 (539)
T ss_pred CCCcEEEECCCHHHHHHHHHHHhc-ccccCCceEEEEeCCCCcC
Confidence 457999999999999999999985 5 8999999988764
No 183
>PRK07395 L-aspartate oxidase; Provisional
Probab=97.86 E-value=2.1e-05 Score=67.37 Aligned_cols=37 Identities=35% Similarity=0.458 Sum_probs=32.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..++||||||+|.||+.+|.+++ . |.+|+|||+++..
T Consensus 7 ~~e~DVlVVG~G~AGl~AAi~A~-~-G~~V~lieK~~~~ 43 (553)
T PRK07395 7 PSQFDVLVVGSGAAGLYAALCLP-S-HLRVGLITKDTLK 43 (553)
T ss_pred cccCCEEEECccHHHHHHHHHhh-c-CCCEEEEEccCCC
Confidence 45789999999999999999985 3 8899999998754
No 184
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.85 E-value=2e-05 Score=68.74 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
+||+||||+|++|..+|.++++. |++|+|+|++
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~-G~kV~lie~~ 148 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMER-GLKVIIFTGD 148 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHC-CCcEEEEeCC
Confidence 68999999999999999999996 9999999975
No 185
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.82 E-value=3.9e-05 Score=65.00 Aligned_cols=34 Identities=29% Similarity=0.521 Sum_probs=31.4
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~ 61 (146)
...||++|||+|++|+.+|.+|++. |++|+|+|.
T Consensus 209 ~~~~dvvIIGgGpaGl~aA~~la~~-G~~v~li~~ 242 (517)
T PRK15317 209 KDPYDVLVVGGGPAGAAAAIYAARK-GIRTGIVAE 242 (517)
T ss_pred CCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEec
Confidence 4579999999999999999999996 999999986
No 186
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=97.82 E-value=2.5e-05 Score=65.69 Aligned_cols=35 Identities=23% Similarity=0.451 Sum_probs=31.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
++|++|||+|.+|+.+|.++++. |. |+|||+++..
T Consensus 2 ~~DVlVVG~G~AGl~AA~~aa~~-G~-V~lleK~~~~ 36 (488)
T TIGR00551 2 SCDVVVIGSGAAGLSAALALADQ-GR-VIVLSKAPVT 36 (488)
T ss_pred CccEEEECccHHHHHHHHHHHhC-CC-EEEEEccCCC
Confidence 57999999999999999999996 76 9999998653
No 187
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=97.82 E-value=2.7e-05 Score=62.66 Aligned_cols=36 Identities=31% Similarity=0.506 Sum_probs=33.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
++||++|||+|.+|+.++.+|.++ |+++.||-+|..
T Consensus 1 M~fDv~IIGGGLAGltc~l~l~~~-Gk~c~iv~~gQs 36 (421)
T COG3075 1 MNFDVAIIGGGLAGLTCGLALQQA-GKRCAIVNRGQS 36 (421)
T ss_pred CcccEEEEcCcHHHHHHHHHHHhc-CCcEEEEeCChh
Confidence 479999999999999999999997 999999999975
No 188
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.81 E-value=2.9e-05 Score=64.54 Aligned_cols=35 Identities=26% Similarity=0.215 Sum_probs=32.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-|++|||+|++|+.+|..|+++ |++|.|+|+.+..
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~-Gl~V~LiE~rp~~ 37 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKR-GVPVELYEMRPVK 37 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence 4899999999999999999996 9999999987654
No 189
>PRK12839 hypothetical protein; Provisional
Probab=97.80 E-value=3.5e-05 Score=66.23 Aligned_cols=37 Identities=24% Similarity=0.407 Sum_probs=33.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|++|||+|.+|+.+|..++++ |.+|+|||++...
T Consensus 7 ~~~dv~ViG~G~aG~~aa~~~~~~-g~~v~~iek~~~~ 43 (572)
T PRK12839 7 HTYDVVVVGSGAGGLSAAVAAAYG-GAKVLVVEKASTC 43 (572)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 478999999999999999999996 9999999998653
No 190
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.79 E-value=3.6e-05 Score=69.93 Aligned_cols=37 Identities=27% Similarity=0.469 Sum_probs=33.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|++|||+|++|+.+|.++++. |++|+|+|+++..
T Consensus 162 ~~~dVvIIGaGPAGLaAA~~aar~-G~~V~liD~~~~~ 198 (985)
T TIGR01372 162 AHCDVLVVGAGPAGLAAALAAARA-GARVILVDEQPEA 198 (985)
T ss_pred ccCCEEEECCCHHHHHHHHHHHhC-CCcEEEEecCCCC
Confidence 468999999999999999999995 9999999998665
No 191
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=97.78 E-value=3.8e-05 Score=66.09 Aligned_cols=38 Identities=26% Similarity=0.260 Sum_probs=32.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~ 65 (146)
.++||||||+|.+|+.+|.+++++ ++.+|+|||++...
T Consensus 3 ~~~DVlVVG~G~AGl~AAi~Aa~~g~g~~V~lleK~~~~ 41 (582)
T PRK09231 3 FQADLAIIGAGGAGLRAAIAAAEANPNLKIALISKVYPM 41 (582)
T ss_pred eeeeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 368999999999999999999985 25799999998654
No 192
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=97.78 E-value=2.9e-05 Score=67.28 Aligned_cols=34 Identities=29% Similarity=0.511 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHH----HhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLS----EELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~----~~~g~~VlvLE~G~~~ 65 (146)
||||||+|.||+.+|.+++ ++ |.+|+|||++...
T Consensus 1 DVlVIGsG~AGL~AAl~Aa~~~~e~-G~~VilieK~~~~ 38 (614)
T TIGR02061 1 DLLIVGGGMGGCGAAFEAVYWGDKK-GLKIVLVEKANLE 38 (614)
T ss_pred CEEEECCCHHHHHHHHHHHhhhhhC-CCeEEEEEccCCC
Confidence 8999999999999999998 54 8999999998653
No 193
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=97.78 E-value=3.9e-05 Score=66.06 Aligned_cols=37 Identities=27% Similarity=0.275 Sum_probs=32.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~ 65 (146)
++|++|||+|.+|+.+|.+++++ ++.+|+|||++...
T Consensus 3 ~~DVlVIG~G~AGl~AAl~aa~~g~g~~V~lveK~~~~ 40 (580)
T TIGR01176 3 QHDIAVIGAGGAGLRAAIAAAEANPHLDVALISKVYPM 40 (580)
T ss_pred ceeEEEECccHHHHHHHHHHHHhCCCCcEEEEEccCCC
Confidence 58999999999999999999984 25799999998654
No 194
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=97.78 E-value=3.2e-05 Score=64.91 Aligned_cols=35 Identities=31% Similarity=0.390 Sum_probs=32.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
.|+|+|+|.||+.+|++|+++ |++|.|+|+++..+
T Consensus 2 rVai~GaG~AgL~~a~~La~~-g~~vt~~ea~~~~G 36 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADA-GYDVTLYEARDRLG 36 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhC-CCceEEEeccCccC
Confidence 589999999999999999997 99999999998764
No 195
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=97.77 E-value=4.3e-05 Score=69.36 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=34.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
....+++|||+|+||+.+|+.|++. |++|+|+|+.+..
T Consensus 535 ~~~kkVaIIGGGPAGLSAA~~LAr~-G~~VTV~Ek~~~l 572 (1012)
T TIGR03315 535 SSAHKVAVIGAGPAGLSAGYFLARA-GHPVTVFEKKEKP 572 (1012)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHC-CCeEEEEeccccc
Confidence 3468999999999999999999996 9999999998654
No 196
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.77 E-value=3.7e-05 Score=69.24 Aligned_cols=36 Identities=33% Similarity=0.500 Sum_probs=33.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.++|+||||+|.+|+.+|.++++. |.+|+|||++..
T Consensus 12 ~~~DVlVVG~G~AGl~AAl~Aa~~-G~~V~lleK~~~ 47 (897)
T PRK13800 12 LDCDVLVIGGGTAGTMAALTAAEH-GANVLLLEKAHV 47 (897)
T ss_pred eecCEEEECcCHHHHHHHHHHHHC-CCeEEEEecccc
Confidence 478999999999999999999996 999999999875
No 197
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=97.76 E-value=3.8e-05 Score=65.29 Aligned_cols=38 Identities=34% Similarity=0.594 Sum_probs=35.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
++.+|++|||||..|+-+|..++.+ |.+|+|+|+++.-
T Consensus 10 ~~~~DviVIGGGitG~GiArDaA~R-Gl~v~LvE~~D~A 47 (532)
T COG0578 10 MEEFDVIVIGGGITGAGIARDAAGR-GLKVALVEKGDLA 47 (532)
T ss_pred ccCCCEEEECCchhhHHHHHHHHhC-CCeEEEEecCccc
Confidence 3789999999999999999999996 9999999999763
No 198
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=97.75 E-value=3.9e-05 Score=70.83 Aligned_cols=37 Identities=30% Similarity=0.337 Sum_probs=33.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..+||||||+|.+|+.+|.+.+++ |.+|+|||+++..
T Consensus 408 ~~~DVvVVG~G~AGl~AAi~Aae~-Ga~VivlEK~~~~ 444 (1167)
T PTZ00306 408 LPARVIVVGGGLAGCSAAIEAASC-GAQVILLEKEAKL 444 (1167)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEEccCCC
Confidence 468999999999999999999996 9999999998764
No 199
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.75 E-value=4.2e-05 Score=62.69 Aligned_cols=34 Identities=38% Similarity=0.495 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~~ 65 (146)
+++|||+|++|+++|..|+++ | .+|.|+|+.+..
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~-g~~~v~v~Er~~~~ 36 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKH-SHLNVQLFEAAPAF 36 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCCCEEEEecCCcC
Confidence 689999999999999999997 6 599999998664
No 200
>PRK08071 L-aspartate oxidase; Provisional
Probab=97.74 E-value=4.5e-05 Score=64.62 Aligned_cols=35 Identities=29% Similarity=0.516 Sum_probs=31.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
++||||||+|.||+.+|.++++ +.+|+|||+++..
T Consensus 3 ~~DVlVVG~G~AGl~AAl~a~~--g~~V~lveK~~~~ 37 (510)
T PRK08071 3 SADVIIIGSGIAALTVAKELCH--EYNVIIITKKTKR 37 (510)
T ss_pred ccCEEEECccHHHHHHHHHhhc--CCCEEEEeccCCC
Confidence 6899999999999999999865 7899999998754
No 201
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.74 E-value=4.1e-05 Score=64.90 Aligned_cols=34 Identities=29% Similarity=0.542 Sum_probs=31.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~ 61 (146)
...||++|||+|++|+.+|.+|++. |++|+|+|.
T Consensus 210 ~~~~dVvIIGgGpAGl~AA~~la~~-G~~v~li~~ 243 (515)
T TIGR03140 210 LDPYDVLVVGGGPAGAAAAIYAARK-GLRTAMVAE 243 (515)
T ss_pred cCCCCEEEECCCHHHHHHHHHHHHC-CCcEEEEec
Confidence 4579999999999999999999996 999999975
No 202
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=97.73 E-value=4.2e-05 Score=65.79 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=31.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.++||||||+|.+|+.+|.++++ +.+|+|||++..
T Consensus 4 ~~~DVlVIG~G~AGl~AAl~aa~--~~~VilleK~~~ 38 (583)
T PRK08205 4 HRYDVVIVGAGGAGMRAAIEAGP--RARTAVLTKLYP 38 (583)
T ss_pred eeccEEEECccHHHHHHHHHHHh--CCCEEEEeCCCC
Confidence 46899999999999999999987 389999999864
No 203
>PRK09077 L-aspartate oxidase; Provisional
Probab=97.73 E-value=4.2e-05 Score=65.18 Aligned_cols=36 Identities=39% Similarity=0.591 Sum_probs=32.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++||||||+|.+|+.+|.++++. .+|+|||++...
T Consensus 7 ~~~DVlVVG~G~AGl~AA~~aa~~--~~VilveK~~~~ 42 (536)
T PRK09077 7 HQCDVLIIGSGAAGLSLALRLAEH--RRVAVLSKGPLS 42 (536)
T ss_pred ccCCEEEECchHHHHHHHHHHHHC--CCEEEEeccCCC
Confidence 468999999999999999999883 799999998753
No 204
>KOG2820|consensus
Probab=97.73 E-value=4e-05 Score=61.71 Aligned_cols=38 Identities=34% Similarity=0.390 Sum_probs=34.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
....|+||||+|..|+.+|++|++. |.++++||+-+.+
T Consensus 5 ~~~~~viiVGAGVfG~stAyeLaK~-g~killLeqf~~p 42 (399)
T KOG2820|consen 5 VKSRDVIIVGAGVFGLSTAYELAKR-GDKILLLEQFPLP 42 (399)
T ss_pred ccceeEEEEcccccchHHHHHHHhc-CCeEEEEeccCCC
Confidence 4578999999999999999999997 8999999998765
No 205
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=97.73 E-value=6.2e-05 Score=64.73 Aligned_cols=38 Identities=32% Similarity=0.454 Sum_probs=34.2
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
+.++|++|||+|.+|+.+|..++++ |++|+|||+.+..
T Consensus 14 ~~~~dvvvvG~G~aG~~aa~~~~~~-g~~v~l~ek~~~~ 51 (578)
T PRK12843 14 DAEFDVIVIGAGAAGMSAALFAAIA-GLKVLLVERTEYV 51 (578)
T ss_pred CCCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 4578999999999999999999996 9999999997653
No 206
>PRK12831 putative oxidoreductase; Provisional
Probab=97.72 E-value=5.7e-05 Score=63.32 Aligned_cols=38 Identities=26% Similarity=0.422 Sum_probs=33.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
....|++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~-G~~V~v~e~~~~~ 175 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKM-GYDVTIFEALHEP 175 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhC-CCeEEEEecCCCC
Confidence 3467999999999999999999996 9999999987653
No 207
>KOG2415|consensus
Probab=97.72 E-value=4.2e-05 Score=63.35 Aligned_cols=39 Identities=36% Similarity=0.511 Sum_probs=33.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHh-----CCCcEEEEecCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEE-----LDWRVLLIEAGGDPP 66 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~-----~g~~VlvLE~G~~~~ 66 (146)
..+|++|||+|++|+++|.||.+. ...+|.|+|++...+
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~G 118 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVG 118 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccC
Confidence 368999999999999999999862 256999999988754
No 208
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=97.69 E-value=3.4e-05 Score=63.39 Aligned_cols=33 Identities=39% Similarity=0.563 Sum_probs=30.1
Q ss_pred EEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 33 IIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 33 iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
+|||+|++|+++|.+++++ |++|+|||+.+..+
T Consensus 1 vIIGgG~aGl~aAi~aa~~-G~~V~llEk~~~~G 33 (400)
T TIGR00275 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNKKIG 33 (400)
T ss_pred CEEEEeHHHHHHHHHHHhc-CCcEEEEecCcccc
Confidence 6999999999999999996 99999999987653
No 209
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.67 E-value=6.1e-05 Score=62.48 Aligned_cols=34 Identities=47% Similarity=0.707 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
||++|||+|.+|+.+|..|+++ +++|+|+|++..
T Consensus 1 ~Dv~IIGgG~aGl~~A~~l~~~-g~~v~lv~~~~~ 34 (419)
T TIGR03378 1 FDVIIIGGGLAGLSCALRLAEA-GKKCAIIAAGQS 34 (419)
T ss_pred CCEEEECchHHHHHHHHHHHHC-CCCEEEEeCCCc
Confidence 6999999999999999999996 999999999863
No 210
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.66 E-value=6.2e-05 Score=62.74 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+++|||+|++|..+|.++++. |++|+|+|++..
T Consensus 2 ~vvVIG~G~aG~~aA~~~~~~-g~~V~lie~~~~ 34 (458)
T PRK06912 2 KLVVIGGGPAGYVAAITAAQN-GKNVTLIDEADL 34 (458)
T ss_pred eEEEECCCHHHHHHHHHHHhC-CCcEEEEECCcc
Confidence 789999999999999999996 999999999754
No 211
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=97.65 E-value=5.5e-05 Score=62.20 Aligned_cols=28 Identities=46% Similarity=0.631 Sum_probs=25.2
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEE
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLI 59 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvL 59 (146)
||||||+|.||+.+|..+++. |.+|+|+
T Consensus 1 DViVVGgG~AG~eAA~aaAr~-G~~V~Li 28 (392)
T PF01134_consen 1 DVIVVGGGHAGCEAALAAARM-GAKVLLI 28 (392)
T ss_dssp EEEEESSSHHHHHHHHHHHHT-T--EEEE
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEE
Confidence 899999999999999999997 9999999
No 212
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.63 E-value=0.00011 Score=62.17 Aligned_cols=44 Identities=30% Similarity=0.327 Sum_probs=36.1
Q ss_pred ccccCCcccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCCC
Q psy3408 23 EDNISGKFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDPP 66 (146)
Q Consensus 23 ~~~~~~~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~~ 66 (146)
+.......+++|||+|++|+.+|..|++ ..|++|.|+|+.+.+.
T Consensus 20 ~~~~~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pg 64 (491)
T PLN02852 20 SSSTSEPLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPF 64 (491)
T ss_pred CCCCCCCCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCc
Confidence 3334456799999999999999999986 2499999999988753
No 213
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.62 E-value=8e-05 Score=62.03 Aligned_cols=33 Identities=30% Similarity=0.449 Sum_probs=30.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
|++|||+|.+|+.+|..|++. |.+|+|+|+.+.
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~-G~~V~LiE~rp~ 34 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQA-GVPVILYEMRPE 34 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhC-CCcEEEEecccc
Confidence 799999999999999999996 999999998665
No 214
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.62 E-value=8.8e-05 Score=63.70 Aligned_cols=38 Identities=29% Similarity=0.491 Sum_probs=34.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..++|+||||+|.||+.+|.+++++ |.+|+|||+....
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~-g~~V~l~~K~~~~ 41 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEA-GLKVALLSKAPPK 41 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhc-CCcEEEEEccccC
Confidence 4579999999999999999999997 8999999998764
No 215
>KOG1399|consensus
Probab=97.62 E-value=7.2e-05 Score=62.58 Aligned_cols=39 Identities=28% Similarity=0.366 Sum_probs=35.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE 67 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~ 67 (146)
..-+++|||+|++|+++|..|.+. |+.|.++||.++.+.
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~-g~~v~vfEr~~~iGG 43 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLRE-GHEVVVFERTDDIGG 43 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHC-CCCceEEEecCCccc
Confidence 456999999999999999999996 999999999988753
No 216
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=97.61 E-value=9.4e-05 Score=62.13 Aligned_cols=35 Identities=29% Similarity=0.261 Sum_probs=31.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
+++|||+|.+|+++|++|+++ |++|+|+|+.+..+
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~-G~~v~v~E~~~~~G 35 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDA-GHEVDIYESRSFIG 35 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCcEEEEEecCCCC
Confidence 479999999999999999996 99999999987653
No 217
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.60 E-value=0.00011 Score=61.33 Aligned_cols=38 Identities=29% Similarity=0.415 Sum_probs=34.0
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...++++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~-G~~V~vie~~~~~ 168 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKA-GHSVTVFEALHKP 168 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 3468999999999999999999996 9999999997654
No 218
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=97.59 E-value=9.2e-05 Score=67.05 Aligned_cols=38 Identities=32% Similarity=0.319 Sum_probs=34.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
...+|+|||+|+||+++|..|+++ |++|+|+|+.+..+
T Consensus 305 ~gkkVaVIGsGPAGLsaA~~Lar~-G~~VtVfE~~~~~G 342 (944)
T PRK12779 305 VKPPIAVVGSGPSGLINAYLLAVE-GFPVTVFEAFHDLG 342 (944)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEeeCCCCC
Confidence 357999999999999999999996 99999999987653
No 219
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.58 E-value=0.00012 Score=61.31 Aligned_cols=37 Identities=24% Similarity=0.368 Sum_probs=33.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~-G~~V~vie~~~~~ 178 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARA-GHKVTVFERADRI 178 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhC-CCcEEEEecCCCC
Confidence 457999999999999999999996 9999999998664
No 220
>PLN02529 lysine-specific histone demethylase 1
Probab=97.56 E-value=0.00013 Score=64.52 Aligned_cols=38 Identities=32% Similarity=0.466 Sum_probs=34.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
...|++|||+|++|+.+|..|+++ |++|+|+|+.+..+
T Consensus 159 ~~~~v~viGaG~aGl~aA~~l~~~-g~~v~v~E~~~~~G 196 (738)
T PLN02529 159 TEGSVIIVGAGLAGLAAARQLLSF-GFKVVVLEGRNRPG 196 (738)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHc-CCcEEEEecCccCc
Confidence 467999999999999999999996 99999999987654
No 221
>PRK07846 mycothione reductase; Reviewed
Probab=97.56 E-value=0.0001 Score=61.53 Aligned_cols=33 Identities=36% Similarity=0.669 Sum_probs=28.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+||+||||+|++|..+|.+ +. |++|+|+|++..
T Consensus 1 ~yD~vVIG~G~~g~~aa~~--~~-G~~V~lie~~~~ 33 (451)
T PRK07846 1 HYDLIIIGTGSGNSILDER--FA-DKRIAIVEKGTF 33 (451)
T ss_pred CCCEEEECCCHHHHHHHHH--HC-CCeEEEEeCCCC
Confidence 4899999999999988865 43 999999998643
No 222
>PLN02612 phytoene desaturase
Probab=97.56 E-value=0.00013 Score=62.60 Aligned_cols=37 Identities=27% Similarity=0.399 Sum_probs=33.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...+++|||+|.+|+++|++|+++ |++|+|+|+.+..
T Consensus 92 ~~~~v~iiG~G~~Gl~~a~~l~~~-g~~~~~~e~~~~~ 128 (567)
T PLN02612 92 KPLKVVIAGAGLAGLSTAKYLADA-GHKPILLEARDVL 128 (567)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCCC
Confidence 357999999999999999999996 9999999997654
No 223
>KOG2614|consensus
Probab=97.53 E-value=0.00014 Score=59.83 Aligned_cols=36 Identities=33% Similarity=0.538 Sum_probs=32.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..+++|||||.+|+++|..|.++ |.+|+|+|+..++
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~-G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRK-GIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHc-CCeEEEEeecccc
Confidence 46899999999999999999996 9999999996554
No 224
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.53 E-value=0.00017 Score=62.82 Aligned_cols=37 Identities=22% Similarity=0.294 Sum_probs=33.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~-G~~V~V~E~~~~~ 362 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARN-GVAVTVYDRHPEI 362 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 457999999999999999999996 9999999997654
No 225
>PRK07512 L-aspartate oxidase; Provisional
Probab=97.52 E-value=9.9e-05 Score=62.60 Aligned_cols=34 Identities=29% Similarity=0.315 Sum_probs=30.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.++||||||+|.+|+.+|.+++ +.+|+|||+++.
T Consensus 8 ~~~DVlVIG~G~AGl~AAl~Aa---~~~V~lleK~~~ 41 (513)
T PRK07512 8 LTGRPVIVGGGLAGLMAALKLA---PRPVVVLSPAPL 41 (513)
T ss_pred CcCCEEEECchHHHHHHHHHhC---cCCEEEEECCCC
Confidence 4689999999999999999985 459999999875
No 226
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=97.51 E-value=0.00016 Score=64.36 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=34.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
...+++|||+|++|+.+|..|++. |++|+|+|+....+
T Consensus 237 ~~~~v~IiGaG~aGl~aA~~L~~~-g~~v~v~E~~~r~G 274 (808)
T PLN02328 237 EPANVVVVGAGLAGLVAARQLLSM-GFKVVVLEGRARPG 274 (808)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHC-CCcEEEEeccccCC
Confidence 467999999999999999999996 99999999987654
No 227
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.51 E-value=0.00016 Score=65.92 Aligned_cols=37 Identities=27% Similarity=0.140 Sum_probs=33.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...+++|||+|++|+.+|..|+++ |++|+|+|+.+..
T Consensus 429 ~~~kVaIIG~GPAGLsaA~~La~~-G~~VtV~E~~~~~ 465 (1006)
T PRK12775 429 KLGKVAICGSGPAGLAAAADLVKY-GVDVTVYEALHVV 465 (1006)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence 357999999999999999999997 9999999998655
No 228
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=97.51 E-value=0.00011 Score=63.69 Aligned_cols=31 Identities=35% Similarity=0.507 Sum_probs=29.3
Q ss_pred EEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
|||||+|.||+.+|.++++. |.+|+|||+++
T Consensus 1 VlVVG~G~AGl~AAl~Aae~-G~~VilleK~~ 31 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAEL-GYHVKLFSYVD 31 (603)
T ss_pred CEEECccHHHHHHHHHHHHc-CCCEEEEEecC
Confidence 68999999999999999996 99999999987
No 229
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.51 E-value=0.00014 Score=64.54 Aligned_cols=35 Identities=23% Similarity=0.304 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~ 65 (146)
+++|||+|++|+++|..|+++ +|++|+|+|+.+..
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~~ 37 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRPY 37 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCCC
Confidence 689999999999999999985 38999999998753
No 230
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.49 E-value=0.00016 Score=64.02 Aligned_cols=37 Identities=24% Similarity=0.390 Sum_probs=33.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 430 ~~~~V~IIGaGpAGl~aA~~l~~~-G~~V~v~e~~~~~ 466 (752)
T PRK12778 430 NGKKVAVIGSGPAGLSFAGDLAKR-GYDVTVFEALHEI 466 (752)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 467999999999999999999996 9999999996543
No 231
>PLN02487 zeta-carotene desaturase
Probab=97.48 E-value=0.00022 Score=61.38 Aligned_cols=38 Identities=26% Similarity=0.261 Sum_probs=33.9
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
...+++|||+|++|+.+|++|+++ |++|+|+|+.+..+
T Consensus 74 ~~~~v~iiG~G~~Gl~~a~~L~~~-g~~v~i~E~~~~~g 111 (569)
T PLN02487 74 PKLKVAIIGAGLAGMSTAVELLDQ-GHEVDIYESRPFIG 111 (569)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhC-CCeeEEEecCCCCC
Confidence 346999999999999999999996 99999999987653
No 232
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=97.47 E-value=0.00016 Score=62.57 Aligned_cols=34 Identities=35% Similarity=0.535 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
||+||||+|++|+.+|..+++. |.+|+|||+...
T Consensus 1 yDViVIGaG~AGl~aA~ala~~-G~~v~Lie~~~~ 34 (617)
T TIGR00136 1 FDVIVIGGGHAGCEAALAAARM-GAKTLLLTLNLD 34 (617)
T ss_pred CeEEEECccHHHHHHHHHHHHC-CCCEEEEecccc
Confidence 7999999999999999999996 999999998743
No 233
>KOG0685|consensus
Probab=97.47 E-value=0.00019 Score=59.99 Aligned_cols=40 Identities=35% Similarity=0.439 Sum_probs=35.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE 67 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~ 67 (146)
....++|||+|.+|+.+|.+|-+.....|+|+|+.++.+.
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGG 59 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGG 59 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCc
Confidence 3558999999999999999999877889999999988753
No 234
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.47 E-value=0.00021 Score=59.58 Aligned_cols=38 Identities=26% Similarity=0.457 Sum_probs=33.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
....+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 138 ~~~~~VvIIGgGpaGl~aA~~l~~~-g~~V~lie~~~~~ 175 (457)
T PRK11749 138 KTGKKVAVIGAGPAGLTAAHRLARK-GYDVTIFEARDKA 175 (457)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHhC-CCeEEEEccCCCC
Confidence 3457999999999999999999996 9999999998654
No 235
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.47 E-value=0.00032 Score=44.63 Aligned_cols=34 Identities=35% Similarity=0.470 Sum_probs=31.6
Q ss_pred EEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
++|||+|+.|+-+|..|++. +++|.|+|+.+...
T Consensus 2 vvViGgG~ig~E~A~~l~~~-g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 2 VVVIGGGFIGIELAEALAEL-GKEVTLIERSDRLL 35 (80)
T ss_dssp EEEESSSHHHHHHHHHHHHT-TSEEEEEESSSSSS
T ss_pred EEEECcCHHHHHHHHHHHHh-CcEEEEEeccchhh
Confidence 78999999999999999996 99999999998765
No 236
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.46 E-value=0.00017 Score=60.19 Aligned_cols=33 Identities=30% Similarity=0.538 Sum_probs=27.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+||+||||+|++|..+|. ++. |++|.|+|++..
T Consensus 2 ~yD~vvIG~G~~g~~aa~--~~~-g~~V~lie~~~~ 34 (452)
T TIGR03452 2 HYDLIIIGTGSGNSIPDP--RFA-DKRIAIVEKGTF 34 (452)
T ss_pred CcCEEEECCCHHHHHHHH--HHC-CCeEEEEeCCCC
Confidence 699999999999988754 444 999999998643
No 237
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=97.45 E-value=0.0002 Score=59.83 Aligned_cols=35 Identities=37% Similarity=0.477 Sum_probs=31.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGGDPP 66 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~~~~ 66 (146)
.++|||+|.+|+.+|++|.++ + ..+.|+|++++.+
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~-~p~~~i~lfE~~~r~G 38 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKA-GPDVEVTLFEADDRVG 38 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHh-CCCCcEEEEecCCCCC
Confidence 489999999999999999996 6 8999999997753
No 238
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.44 E-value=0.00023 Score=64.67 Aligned_cols=37 Identities=22% Similarity=0.336 Sum_probs=33.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...+++|||+|++|+.+|..|+++ |++|+|+|+.+..
T Consensus 538 tgKkVaIIGgGPAGLsAA~~Lar~-G~~VtV~Ek~~~~ 574 (1019)
T PRK09853 538 SRKKVAVIGAGPAGLAAAYFLARA-GHPVTVFEREENA 574 (1019)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccc
Confidence 456999999999999999999997 9999999998654
No 239
>KOG2665|consensus
Probab=97.41 E-value=0.00013 Score=58.61 Aligned_cols=44 Identities=30% Similarity=0.457 Sum_probs=38.1
Q ss_pred cccccCCcccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCC
Q psy3408 22 AEDNISGKFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDP 65 (146)
Q Consensus 22 ~~~~~~~~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~ 65 (146)
+.+.....||.+|||+|..|+..|.+|.- +|+.+|.|||+....
T Consensus 41 ~~s~s~~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~l 85 (453)
T KOG2665|consen 41 AESISKERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSL 85 (453)
T ss_pred ccccccccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhh
Confidence 34556678999999999999999999984 689999999998764
No 240
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.41 E-value=0.00022 Score=59.68 Aligned_cols=33 Identities=30% Similarity=0.394 Sum_probs=30.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
|+||||+|++|..+|..+++. |++|+|+|++..
T Consensus 3 ~vvviG~G~~G~~~a~~~~~~-g~~v~~~e~~~~ 35 (466)
T PRK07845 3 RIVIIGGGPGGYEAALVAAQL-GADVTVIERDGL 35 (466)
T ss_pred cEEEECCCHHHHHHHHHHHhC-CCeEEEEEccCC
Confidence 899999999999999999996 999999998753
No 241
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=97.40 E-value=0.00022 Score=59.70 Aligned_cols=43 Identities=42% Similarity=0.606 Sum_probs=30.0
Q ss_pred cEEEECCCHHHHHHHHHHHHhCC---CcEEEEecCCCCC---CCccCcch
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELD---WRVLLIEAGGDPP---EASELPGY 74 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g---~~VlvLE~G~~~~---~~~~~p~~ 74 (146)
||+|||+|++|.++|..|++. + .+|+|||+...+. ....+|.+
T Consensus 1 ~v~IvGgG~aG~~~A~~L~~~-~~~~~~v~lie~~~~~~~~vGe~~~p~~ 49 (454)
T PF04820_consen 1 DVVIVGGGTAGWMAAAALARA-GPDALSVTLIESPDIPRIGVGESTLPSL 49 (454)
T ss_dssp EEEEE--SHHHHHHHHHHHHH-CTCSSEEEEEE-SSS---SSEEE--THH
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCCCcEEEEEecCCCCCCCccccchHHH
Confidence 799999999999999999996 5 8999999987653 13455543
No 242
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=97.38 E-value=0.00042 Score=58.36 Aligned_cols=39 Identities=26% Similarity=0.417 Sum_probs=34.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
...-+++|||+|.+|+.+|.+|++. |.+|.|+|+.+..+
T Consensus 122 ~v~~svLVIGGGvAGitAAl~La~~-G~~v~LVEKepsiG 160 (622)
T COG1148 122 EVSKSVLVIGGGVAGITAALELADM-GFKVYLVEKEPSIG 160 (622)
T ss_pred hhccceEEEcCcHHHHHHHHHHHHc-CCeEEEEecCCccc
Confidence 3455899999999999999999997 99999999988754
No 243
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=97.38 E-value=0.00041 Score=59.63 Aligned_cols=38 Identities=21% Similarity=0.177 Sum_probs=33.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHh---CCCcEEEEecCCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEE---LDWRVLLIEAGGDPP 66 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~---~g~~VlvLE~G~~~~ 66 (146)
.-+++|||||.+|+++|..|++. +|.+|.|+|+.+..+
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~G 62 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPG 62 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCC
Confidence 46899999999999999999985 478999999987754
No 244
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=97.35 E-value=0.00032 Score=58.54 Aligned_cols=39 Identities=31% Similarity=0.435 Sum_probs=30.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
+.+||+||+|.|..-+++|..|+++ |++||.||+.+..+
T Consensus 2 ~~~yDviI~GTGl~esila~als~~-GkkVLhiD~n~yYG 40 (438)
T PF00996_consen 2 DEEYDVIILGTGLTESILAAALSRS-GKKVLHIDRNDYYG 40 (438)
T ss_dssp -SBESEEEE--SHHHHHHHHHHHHT-T--EEEE-SSSSSC
T ss_pred CccceEEEECCCcHHHHHHHHHHhc-CCEEEecCCCCCcC
Confidence 5689999999999999999999997 99999999998875
No 245
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.29 E-value=0.00044 Score=60.38 Aligned_cols=37 Identities=24% Similarity=0.336 Sum_probs=33.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 192 ~~k~VaIIGaGpAGl~aA~~La~~-G~~Vtv~e~~~~~ 228 (652)
T PRK12814 192 SGKKVAIIGAGPAGLTAAYYLLRK-GHDVTIFDANEQA 228 (652)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCcEEEEecCCCC
Confidence 357999999999999999999996 9999999998654
No 246
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.25 E-value=0.00051 Score=55.34 Aligned_cols=37 Identities=24% Similarity=0.324 Sum_probs=33.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
..+++|||+|++|+.+|..|++. |++|.++|+.+...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~-g~~v~lie~~~~~g 54 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACL-GYEVHVYDKLPEPG 54 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHC-CCcEEEEeCCCCCC
Confidence 45999999999999999999996 99999999987653
No 247
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.24 E-value=0.00053 Score=57.54 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=33.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~-G~~V~i~e~~~~~ 176 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARA-GVQVVVFDRHPEI 176 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 467999999999999999999996 9999999998654
No 248
>PLN03000 amine oxidase
Probab=97.23 E-value=0.00051 Score=61.59 Aligned_cols=38 Identities=29% Similarity=0.466 Sum_probs=34.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
...+++|||+|++|+.+|..|.+. |++|+|+|+.++.+
T Consensus 183 ~~~~VvIIGaG~aGL~aA~~L~~~-G~~V~VlE~~~riG 220 (881)
T PLN03000 183 SKSSVVIVGAGLSGLAAARQLMRF-GFKVTVLEGRKRPG 220 (881)
T ss_pred CCCCEEEECccHHHHHHHHHHHHC-CCcEEEEEccCcCC
Confidence 468999999999999999999996 99999999988764
No 249
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.22 E-value=0.00066 Score=59.10 Aligned_cols=37 Identities=19% Similarity=0.240 Sum_probs=33.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~-G~~Vtv~e~~~~~ 345 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARA-GVQVDVFDRHPEI 345 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHc-CCcEEEEeCCCCC
Confidence 467899999999999999999996 9999999998764
No 250
>KOG3855|consensus
Probab=97.20 E-value=0.00047 Score=56.96 Aligned_cols=41 Identities=41% Similarity=0.713 Sum_probs=34.1
Q ss_pred cccCCcccEEEECCCHHHHHHHHHHHHhC---CCcEEEEecCCC
Q psy3408 24 DNISGKFDFIIVGGGSAGAVLANRLSEEL---DWRVLLIEAGGD 64 (146)
Q Consensus 24 ~~~~~~~D~iIIG~G~aG~~~A~~L~~~~---g~~VlvLE~G~~ 64 (146)
.-....||++|||+|+.|..+|..|..++ .+||+|+|.+..
T Consensus 31 ~~~~~~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 31 STDTAKYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cCCcccCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 33445899999999999999999998632 679999999944
No 251
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=97.18 E-value=0.00031 Score=58.10 Aligned_cols=30 Identities=37% Similarity=0.496 Sum_probs=28.1
Q ss_pred EECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 34 IVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 34 IIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
|||+|.+|+.+|.+++++ |.+|+||||.+.
T Consensus 1 VVG~G~AGl~AA~~Aa~~-Ga~V~vlEK~~~ 30 (432)
T TIGR02485 1 VIGGGLAGLCAAIEARRA-GASVLLLEAAPR 30 (432)
T ss_pred CCcccHHHHHHHHHHHhC-CCcEEEEeCCCC
Confidence 799999999999999996 999999999874
No 252
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.14 E-value=0.00093 Score=56.37 Aligned_cols=36 Identities=25% Similarity=0.343 Sum_probs=32.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 143 ~~~V~IIGaG~aGl~aA~~L~~~-g~~V~v~e~~~~~ 178 (485)
T TIGR01317 143 GKKVAVVGSGPAGLAAADQLNRA-GHTVTVFEREDRC 178 (485)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 46999999999999999999996 9999999998754
No 253
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.14 E-value=0.0005 Score=62.30 Aligned_cols=34 Identities=24% Similarity=0.359 Sum_probs=31.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
....|+|||+|+||+.+|+.|++. |++|.|+|+.
T Consensus 382 tgKKVaVVGaGPAGLsAA~~La~~-Gh~Vtv~E~~ 415 (1028)
T PRK06567 382 TNYNILVTGLGPAGFSLSYYLLRS-GHNVTAIDGL 415 (1028)
T ss_pred CCCeEEEECcCHHHHHHHHHHHhC-CCeEEEEccc
Confidence 456999999999999999999996 9999999985
No 254
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.13 E-value=0.00097 Score=56.51 Aligned_cols=38 Identities=21% Similarity=0.273 Sum_probs=33.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
...+.|||+|++|+.+|.+|.++.+++|.|+|+-+.+.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pg 76 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPY 76 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 45799999999999999987654599999999998763
No 255
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.11 E-value=0.00073 Score=57.75 Aligned_cols=35 Identities=29% Similarity=0.410 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
.|+|||+|++|+++|..|.+. |..|+++|+.++.+
T Consensus 3 rVaVIGaG~sGL~a~k~l~e~-g~~~~~fE~~~~iG 37 (531)
T PF00743_consen 3 RVAVIGAGPSGLAAAKNLLEE-GLEVTCFEKSDDIG 37 (531)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-T-EEEEEESSSSSS
T ss_pred EEEEECccHHHHHHHHHHHHC-CCCCeEEecCCCCC
Confidence 589999999999999999996 99999999998865
No 256
>KOG1335|consensus
Probab=97.10 E-value=0.0011 Score=54.61 Aligned_cols=36 Identities=25% Similarity=0.554 Sum_probs=33.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
..||++|||+|++|-++|.+.++. |.+...+|+...
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQl-GlkTacvEkr~~ 73 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQL-GLKTACVEKRGT 73 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHh-cceeEEEeccCc
Confidence 489999999999999999999996 999999999544
No 257
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=97.03 E-value=0.0012 Score=54.07 Aligned_cols=36 Identities=31% Similarity=0.467 Sum_probs=31.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCC--cEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~--~VlvLE~G~~~ 65 (146)
..+++|||+|++|+.+|..|++. +. +|+|+++.+..
T Consensus 3 ~~~vvIIGgG~AG~~aA~~Lr~~-~~~~~I~li~~e~~~ 40 (396)
T PRK09754 3 EKTIIIVGGGQAAAMAAASLRQQ-GFTGELHLFSDERHL 40 (396)
T ss_pred cCcEEEECChHHHHHHHHHHHhh-CCCCCEEEeCCCCCC
Confidence 35899999999999999999985 55 79999998654
No 258
>PLN02976 amine oxidase
Probab=97.03 E-value=0.0011 Score=62.17 Aligned_cols=37 Identities=30% Similarity=0.477 Sum_probs=33.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
.+|++|||+|++|+.+|..|++. |++|+|||+.+..+
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~-G~~V~VlEa~~~vG 729 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQ-GFSVTVLEARSRIG 729 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHC-CCcEEEEeeccCCC
Confidence 57999999999999999999996 99999999976653
No 259
>KOG4716|consensus
Probab=97.03 E-value=0.00071 Score=54.94 Aligned_cols=35 Identities=29% Similarity=0.481 Sum_probs=31.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
...||.||||+|.+|+++|.+.+.- |++|.+||-=
T Consensus 17 sydyDLIviGgGSgGLacaKeAa~~-G~kV~~lDfV 51 (503)
T KOG4716|consen 17 SYDYDLIVIGGGSGGLACAKEAADL-GAKVACLDFV 51 (503)
T ss_pred cCCccEEEEcCCcchhhHHHHHHhc-CCcEEEEeec
Confidence 4579999999999999999999995 9999999974
No 260
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.03 E-value=0.001 Score=56.98 Aligned_cols=37 Identities=30% Similarity=0.390 Sum_probs=32.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~-G~~V~v~e~~~~~ 172 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRM-GHAVTIFEAGPKL 172 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 356899999999999999999996 9999999987654
No 261
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=96.96 E-value=0.0014 Score=55.00 Aligned_cols=38 Identities=32% Similarity=0.622 Sum_probs=35.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~ 65 (146)
+++||++||+|..|++++..|++ .|.+++.|+||-+..
T Consensus 2 ~~~DVvLIGgGImsaTL~~~L~~l~p~~~I~i~Erl~~~ 40 (488)
T PF06039_consen 2 KEYDVVLIGGGIMSATLGYLLKELEPDWSIAIFERLDSV 40 (488)
T ss_pred CceeEEEECchHHHHHHHHHHHHhCCCCeEEEEEecCcc
Confidence 57999999999999999999998 689999999998765
No 262
>KOG2853|consensus
Probab=96.96 E-value=0.001 Score=54.09 Aligned_cols=40 Identities=28% Similarity=0.452 Sum_probs=34.3
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHH---hCCCcEEEEecCCCC
Q psy3408 26 ISGKFDFIIVGGGSAGAVLANRLSE---ELDWRVLLIEAGGDP 65 (146)
Q Consensus 26 ~~~~~D~iIIG~G~aG~~~A~~L~~---~~g~~VlvLE~G~~~ 65 (146)
...++|++|||+|-.|++.|.-|.+ +.|.+|+|+|+.+..
T Consensus 83 f~~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddty 125 (509)
T KOG2853|consen 83 FPYHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTY 125 (509)
T ss_pred cccccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcc
Confidence 3458899999999999999999986 347999999998764
No 263
>PRK13984 putative oxidoreductase; Provisional
Probab=96.94 E-value=0.0017 Score=56.09 Aligned_cols=38 Identities=29% Similarity=0.358 Sum_probs=33.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
....+++|||+|++|+.+|..|++. |++|+|+|+.+..
T Consensus 281 ~~~~~v~IIGaG~aGl~aA~~L~~~-G~~v~vie~~~~~ 318 (604)
T PRK13984 281 KKNKKVAIVGSGPAGLSAAYFLATM-GYEVTVYESLSKP 318 (604)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 3467899999999999999999996 9999999998754
No 264
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.92 E-value=0.0015 Score=54.18 Aligned_cols=35 Identities=23% Similarity=0.394 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~ 65 (146)
+++|||+|++|..+|.+|++. ++.+|+|+|+.+..
T Consensus 3 ~VVIIGgG~aG~~aA~~l~~~~~~~~I~li~~~~~~ 38 (438)
T PRK13512 3 KIIVVGAVAGGATCASQIRRLDKESDIIIFEKDRDM 38 (438)
T ss_pred eEEEECCcHHHHHHHHHHHhhCCCCCEEEEECCCCc
Confidence 699999999999999999873 46899999999764
No 265
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=96.88 E-value=0.0016 Score=53.84 Aligned_cols=35 Identities=23% Similarity=0.316 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~ 65 (146)
+++|||+|++|+.+|..|++. ++.+|+|+|+.+..
T Consensus 2 ~vvIIGgG~aGl~aA~~l~~~~~~~~Vtli~~~~~~ 37 (444)
T PRK09564 2 KIIIIGGTAAGMSAAAKAKRLNKELEITVYEKTDIV 37 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHHCCCCcEEEEECCCcc
Confidence 589999999999999999984 24599999998753
No 266
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=96.84 E-value=0.0011 Score=56.65 Aligned_cols=36 Identities=31% Similarity=0.485 Sum_probs=31.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
..|||||||+|-||+-+|...++. |.+++||=...+
T Consensus 3 ~~~DVIVIGgGHAG~EAA~AaARm-G~ktlLlT~~~d 38 (621)
T COG0445 3 KEYDVIVIGGGHAGVEAALAAARM-GAKTLLLTLNLD 38 (621)
T ss_pred CCCceEEECCCccchHHHHhhhcc-CCeEEEEEcCCC
Confidence 459999999999999999999996 999999876644
No 267
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.76 E-value=0.002 Score=53.30 Aligned_cols=38 Identities=21% Similarity=0.386 Sum_probs=32.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
+...++||||+|++|+.+|.+|.+. +.+|+|||+.+..
T Consensus 8 ~~~~~vVIvGgG~aGl~~a~~L~~~-~~~ItlI~~~~~~ 45 (424)
T PTZ00318 8 LKKPNVVVLGTGWAGAYFVRNLDPK-KYNITVISPRNHM 45 (424)
T ss_pred CCCCeEEEECCCHHHHHHHHHhCcC-CCeEEEEcCCCCc
Confidence 4467999999999999999999764 7899999987654
No 268
>KOG4254|consensus
Probab=96.75 E-value=0.0017 Score=54.34 Aligned_cols=38 Identities=24% Similarity=0.371 Sum_probs=34.9
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
...||++|||+|..|+.+|..|++. +.+|.++|+....
T Consensus 12 ~~~ydavvig~GhnGL~aaayl~r~-g~~V~vlerrhv~ 49 (561)
T KOG4254|consen 12 KPEYDAVVIGGGHNGLTAAAYLARY-GQSVAVLERRHVI 49 (561)
T ss_pred CcccceEEecCCccchhHHHHHHhc-CcceEEEEEeeec
Confidence 6689999999999999999999995 9999999998554
No 269
>KOG0405|consensus
Probab=96.69 E-value=0.0022 Score=52.32 Aligned_cols=35 Identities=34% Similarity=0.574 Sum_probs=32.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
..|||+|||+|.+|...|.+.++. |.+|.|+|..-
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~-GAkv~l~E~~f 53 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASH-GAKVALCELPF 53 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhc-CceEEEEecCC
Confidence 489999999999999999999997 99999999983
No 270
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=96.66 E-value=0.0025 Score=51.57 Aligned_cols=38 Identities=29% Similarity=0.319 Sum_probs=27.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
+.||+|+||.|++++.+|..|.+.+..+++.||+.+..
T Consensus 1 ~~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~~f 38 (341)
T PF13434_consen 1 EIYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRPSF 38 (341)
T ss_dssp -EESEEEE--SHHHHHHHHHHHHHH---EEEEES-SS-
T ss_pred CceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCCCC
Confidence 36899999999999999999999756999999987754
No 271
>KOG2960|consensus
Probab=96.63 E-value=0.00063 Score=52.08 Aligned_cols=37 Identities=38% Similarity=0.561 Sum_probs=32.7
Q ss_pred cccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~ 65 (146)
+.|+||||+|.+|+.+|+..++ +|..+|.+||+.-.+
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaP 113 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAP 113 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecC
Confidence 4599999999999999999994 689999999996544
No 272
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=96.60 E-value=0.0031 Score=50.69 Aligned_cols=35 Identities=26% Similarity=0.493 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHh--CCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEE--LDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~--~g~~VlvLE~G~~~ 65 (146)
++||||+|++|..+|.+|.++ ++.+|+|+|+.+..
T Consensus 1 ~vvIiGgG~aG~~~a~~l~~~~~~~~~I~li~~~~~~ 37 (364)
T TIGR03169 1 HLVLIGGGHTHALVLRRWAMKPLPGVRVTLINPSSTT 37 (364)
T ss_pred CEEEECCcHHHHHHHHHhcCcCCCCCEEEEECCCCCC
Confidence 489999999999999999642 47899999988664
No 273
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=96.59 E-value=0.0022 Score=54.09 Aligned_cols=33 Identities=33% Similarity=0.516 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
||+|||+|.+|+++|..|++ ..+|+||-|++..
T Consensus 9 dV~IiGsG~AGL~~AL~L~~--~~~V~vltk~~~~ 41 (518)
T COG0029 9 DVLIIGSGLAGLTAALSLAP--SFRVTVLTKGPLG 41 (518)
T ss_pred cEEEECCcHHHHHHHHhCCC--CCcEEEEeCCCCC
Confidence 99999999999999999988 4899999998764
No 274
>KOG0042|consensus
Probab=96.56 E-value=0.0009 Score=57.05 Aligned_cols=36 Identities=36% Similarity=0.597 Sum_probs=33.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
+||++|||+|..|.-+|.-.+-+ |.+|.++|+++..
T Consensus 67 ~fDVLIIGGGAtGaGcALDA~TR-GLktaLVE~~DF~ 102 (680)
T KOG0042|consen 67 EFDVLIIGGGATGAGCALDAATR-GLKTALVEAGDFA 102 (680)
T ss_pred cccEEEECCCccCcceeehhhcc-cceeEEEeccccc
Confidence 59999999999999999998885 9999999999874
No 275
>PRK09897 hypothetical protein; Provisional
Probab=96.55 E-value=0.004 Score=53.34 Aligned_cols=37 Identities=19% Similarity=0.271 Sum_probs=30.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPP 66 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~~ 66 (146)
.+++|||+|++|+.+|.+|.+. ...+|.|+|+....+
T Consensus 2 ~~IAIIGgGp~Gl~~a~~L~~~~~~l~V~lfEp~~~~G 39 (534)
T PRK09897 2 KKIAIVGAGPTGIYTFFSLLQQQTPLSISIFEQADEAG 39 (534)
T ss_pred CeEEEECCcHHHHHHHHHHHhcCCCCcEEEEecCCCCC
Confidence 4799999999999999999873 245899999976543
No 276
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=96.51 E-value=0.0052 Score=49.84 Aligned_cols=35 Identities=23% Similarity=0.389 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~ 64 (146)
.+++|||+|+||..+|.+|.+ .++.+|+||++.+.
T Consensus 3 ~~vvIiG~G~AG~~~a~~lr~~~~~~~Itvi~~~~~ 38 (377)
T PRK04965 3 NGIVIIGSGFAARQLVKNIRKQDAHIPITLITADSG 38 (377)
T ss_pred CCEEEECCcHHHHHHHHHHHhhCcCCCEEEEeCCCC
Confidence 489999999999999999987 34678999998764
No 277
>KOG2311|consensus
Probab=96.46 E-value=0.0037 Score=52.83 Aligned_cols=36 Identities=28% Similarity=0.494 Sum_probs=31.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
..+|||||||+|-||+-+|...++- |.+.++|-..-
T Consensus 26 ~~~~dVvVIGgGHAG~EAAaAaaR~-Ga~TlLlT~~l 61 (679)
T KOG2311|consen 26 TSTYDVVVIGGGHAGCEAAAAAARL-GARTLLLTHNL 61 (679)
T ss_pred CCcccEEEECCCccchHHHHHHHhc-CCceEEeeccc
Confidence 6689999999999999999998886 88888876653
No 278
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=96.30 E-value=0.005 Score=51.77 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=33.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
-.|.|||+||+|+.+|..|+++ |++|++.|+-+..+
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~-G~~Vtv~e~~~~~G 159 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRA-GHDVTVFERVALDG 159 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhC-CCeEEEeCCcCCCc
Confidence 6899999999999999999997 99999999987753
No 279
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=96.22 E-value=0.006 Score=49.76 Aligned_cols=37 Identities=27% Similarity=0.278 Sum_probs=33.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
...++.|||+|.+|+++|.-|++ .++|.|.|++...+
T Consensus 7 ~r~~IAVIGsGisGLSAA~~Ls~--rhdVTLfEA~~rlG 43 (447)
T COG2907 7 PRRKIAVIGSGISGLSAAWLLSR--RHDVTLFEADRRLG 43 (447)
T ss_pred CCcceEEEcccchhhhhHHhhhc--ccceEEEecccccc
Confidence 45689999999999999999998 58999999987754
No 280
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.11 E-value=0.0095 Score=47.84 Aligned_cols=38 Identities=29% Similarity=0.364 Sum_probs=34.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE 67 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~ 67 (146)
..+++|||+|+.|+.+|..++++ |++|+++|+.+....
T Consensus 136 ~~~v~vvG~G~~gle~A~~~~~~-G~~v~l~e~~~~~~~ 173 (415)
T COG0446 136 PKDVVVVGAGPIGLEAAEAAAKR-GKKVTLIEAADRLGG 173 (415)
T ss_pred cCeEEEECCcHHHHHHHHHHHHc-CCeEEEEEcccccch
Confidence 46999999999999999999996 999999999988643
No 281
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.03 E-value=0.0034 Score=51.26 Aligned_cols=35 Identities=34% Similarity=0.563 Sum_probs=29.7
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHhCCCcE-EEEec
Q psy3408 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRV-LLIEA 61 (146)
Q Consensus 26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~V-lvLE~ 61 (146)
....||++|||+|++|.++|...+++ |.+. ++-||
T Consensus 208 ~k~~yDVLvVGgGPAgaaAAiYaARK-GiRTGl~aer 243 (520)
T COG3634 208 AKDAYDVLVVGGGPAGAAAAIYAARK-GIRTGLVAER 243 (520)
T ss_pred ccCCceEEEEcCCcchhHHHHHHHhh-cchhhhhhhh
Confidence 34579999999999999999999997 7776 66666
No 282
>KOG1276|consensus
Probab=95.96 E-value=0.013 Score=48.90 Aligned_cols=39 Identities=28% Similarity=0.328 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPPE 67 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~~~ 67 (146)
.-+++|+|+|.+|+.+|+.|++. +...+.|.|++++.+.
T Consensus 11 ~~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGG 50 (491)
T KOG1276|consen 11 GMTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGG 50 (491)
T ss_pred cceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccc
Confidence 56899999999999999999985 3344677999988653
No 283
>KOG4405|consensus
Probab=95.94 E-value=0.011 Score=49.23 Aligned_cols=42 Identities=24% Similarity=0.381 Sum_probs=36.9
Q ss_pred cccCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 24 DNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 24 ~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
+....+||+||||.|.-=+++|...++. |.+||.|++....+
T Consensus 3 D~lP~~fDvVViGTGlpESilAAAcSrs-G~sVLHlDsn~yYG 44 (547)
T KOG4405|consen 3 DILPEEFDVVVIGTGLPESILAAACSRS-GSSVLHLDSNEYYG 44 (547)
T ss_pred cCCchhccEEEEcCCCcHHHHHHHhhhc-CCceEeccCccccC
Confidence 3455689999999999999999999996 99999999987764
No 284
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=95.80 E-value=0.013 Score=41.86 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=27.5
Q ss_pred EEECCCHHHHHHHHHHHHhC----CCcEEEEecCCC
Q psy3408 33 IIVGGGSAGAVLANRLSEEL----DWRVLLIEAGGD 64 (146)
Q Consensus 33 iIIG~G~aG~~~A~~L~~~~----g~~VlvLE~G~~ 64 (146)
.|||+|++|+.++.+|.+.. ..++.|+|+.+.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 49999999999999999863 679999999544
No 285
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=95.70 E-value=0.02 Score=46.56 Aligned_cols=36 Identities=22% Similarity=0.279 Sum_probs=32.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
+--+.|||+|.+|+-+|++++++ |.+|.|.|..+..
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~-Gv~V~L~EMRp~k 38 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKR-GVPVILYEMRPVK 38 (439)
T ss_pred CCceEEEcccccccHHHHHHHHc-CCcEEEEEccccc
Confidence 34688999999999999999996 9999999998764
No 286
>KOG0399|consensus
Probab=95.69 E-value=0.018 Score=53.35 Aligned_cols=45 Identities=22% Similarity=0.321 Sum_probs=37.4
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCCC--CccCcch
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE--ASELPGY 74 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~~--~~~~p~~ 74 (146)
-..+.|||+|++|+.+|..|-++ ||.|+|.||.++.+. -+-+|.+
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~-gh~v~vyer~dr~ggll~ygipnm 1831 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKA-GHTVTVYERSDRVGGLLMYGIPNM 1831 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhc-CcEEEEEEecCCcCceeeecCCcc
Confidence 46899999999999999999996 999999999988752 2344543
No 287
>KOG1800|consensus
Probab=95.61 E-value=0.021 Score=47.07 Aligned_cols=37 Identities=30% Similarity=0.271 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~ 65 (146)
...+.|||+|+||..+|+.|-+ .++.+|-|.|+-+.+
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvP 57 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVP 57 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcc
Confidence 4489999999999999999988 467999999999875
No 288
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=95.55 E-value=0.022 Score=43.50 Aligned_cols=33 Identities=39% Similarity=0.671 Sum_probs=30.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.++|||+|..|...|..|++. |+.|+++|+-+.
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~-g~~Vv~Id~d~~ 34 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEE-GHNVVLIDRDEE 34 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhC-CCceEEEEcCHH
Confidence 589999999999999999997 999999999764
No 289
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.53 E-value=0.026 Score=46.82 Aligned_cols=37 Identities=32% Similarity=0.519 Sum_probs=32.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhC-CCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~-g~~VlvLE~G~~~ 65 (146)
.-.+||||+|++|+.+|.+|.+++ +.++++||+.+..
T Consensus 3 ~~~iVIlGgGfgGl~~a~~l~~~~~~~~itLVd~~~~h 40 (405)
T COG1252 3 KKRIVILGGGFGGLSAAKRLARKLPDVEITLVDRRDYH 40 (405)
T ss_pred CceEEEECCcHHHHHHHHHhhhcCCCCcEEEEeCCCcc
Confidence 457999999999999999999963 4789999998764
No 290
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=95.46 E-value=0.019 Score=48.15 Aligned_cols=40 Identities=30% Similarity=0.518 Sum_probs=34.8
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHh----CCCcEEEEecCCCC
Q psy3408 26 ISGKFDFIIVGGGSAGAVLANRLSEE----LDWRVLLIEAGGDP 65 (146)
Q Consensus 26 ~~~~~D~iIIG~G~aG~~~A~~L~~~----~g~~VlvLE~G~~~ 65 (146)
....+|+|+||+|++|..+|++++.. +..+++++|.|.+.
T Consensus 15 ~~~~~~vvivgag~~g~f~a~~~s~~ar~~~~~~i~~vd~g~~~ 58 (486)
T COG2509 15 MNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLDI 58 (486)
T ss_pred hhhccceEEECCCchHHHHHHHHhhhcccCCceEEEEEEeccch
Confidence 45679999999999999999999964 37899999999765
No 291
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.35 E-value=0.037 Score=38.88 Aligned_cols=31 Identities=29% Similarity=0.588 Sum_probs=28.8
Q ss_pred EEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
+.|+|+|..|+..|.+|+++ +++|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~-g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQA-GHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHC-CCceEEEEccc
Confidence 57999999999999999995 99999999987
No 292
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.30 E-value=0.032 Score=45.61 Aligned_cols=35 Identities=29% Similarity=0.430 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-+++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~-g~~Vtlv~~~~~~ 179 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQR-RCKVTVIELAATV 179 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence 3699999999999999999996 9999999998764
No 293
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=95.23 E-value=0.034 Score=46.57 Aligned_cols=35 Identities=31% Similarity=0.426 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|+.|+-+|..|++. |.+|.|+|+++..
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~-g~~Vtli~~~~~i 215 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADF-GVEVTVVEAADRI 215 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEecCcc
Confidence 3799999999999999999996 9999999998764
No 294
>KOG2404|consensus
Probab=95.06 E-value=0.037 Score=44.97 Aligned_cols=34 Identities=29% Similarity=0.536 Sum_probs=30.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.+||||+|.+|++++.++-.. +..|++||+....
T Consensus 11 pvvVIGgGLAGLsasn~iin~-gg~V~llek~~s~ 44 (477)
T KOG2404|consen 11 PVVVIGGGLAGLSASNDIINK-GGIVILLEKAGSI 44 (477)
T ss_pred cEEEECCchhhhhhHHHHHhc-CCeEEEEeccCCc
Confidence 599999999999999999996 6679999997654
No 295
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.04 E-value=0.041 Score=44.57 Aligned_cols=35 Identities=29% Similarity=0.419 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-+++|||+|..|+-+|..|++. +.+|.++|+++..
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~-g~~Vtlv~~~~~~ 176 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRA-GKAVTLVDNAASL 176 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEecCCcc
Confidence 3799999999999999999996 9999999998754
No 296
>KOG1439|consensus
Probab=95.01 E-value=0.014 Score=48.14 Aligned_cols=39 Identities=26% Similarity=0.419 Sum_probs=35.5
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
+++||+||+|.|.-=|+++..|+.+ |++||++++.+..+
T Consensus 2 deeyDvivlGTgl~ecilS~~Ls~~-gkkVLhiDrN~yYG 40 (440)
T KOG1439|consen 2 DEEYDVIVLGTGLTECILSGALSVD-GKKVLHIDRNDYYG 40 (440)
T ss_pred CCceeEEEEcCCchhheeeeeeeec-CcEEEEEeCCCCCC
Confidence 4579999999999999999999997 99999999988764
No 297
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.99 E-value=0.045 Score=45.30 Aligned_cols=34 Identities=24% Similarity=0.386 Sum_probs=31.2
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 159 ~vvIIGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~ 192 (438)
T PRK07251 159 RLGIIGGGNIGLEFAGLYNKL-GSKVTVLDAASTI 192 (438)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCcc
Confidence 699999999999999999995 9999999998754
No 298
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.90 E-value=0.047 Score=45.35 Aligned_cols=35 Identities=26% Similarity=0.356 Sum_probs=31.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-+++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~ 205 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASL-GSKVTVIEMLDRI 205 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCCC
Confidence 4799999999999999999996 9999999998764
No 299
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.89 E-value=0.056 Score=48.83 Aligned_cols=37 Identities=14% Similarity=0.296 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHh---CCCcEEEEecCCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEE---LDWRVLLIEAGGDPP 66 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~---~g~~VlvLE~G~~~~ 66 (146)
-+++|||+|++|..+|.+|.+. .+.+|+|+++.+...
T Consensus 4 ~kIVIVG~G~AG~~aa~~L~~~~~~~~~~Itvi~~e~~~~ 43 (847)
T PRK14989 4 VRLAIIGNGMVGHRFIEDLLDKADAANFDITVFCEEPRIA 43 (847)
T ss_pred CcEEEECCCHHHHHHHHHHHhhCCCCCCeEEEEECCCCCc
Confidence 3799999999999999999763 357999999997753
No 300
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.88 E-value=0.041 Score=49.19 Aligned_cols=35 Identities=17% Similarity=0.339 Sum_probs=29.9
Q ss_pred EEEECCCHHHHHHHHHHHHh--CCCcEEEEecCCCCC
Q psy3408 32 FIIVGGGSAGAVLANRLSEE--LDWRVLLIEAGGDPP 66 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~--~g~~VlvLE~G~~~~ 66 (146)
++|||+|++|..+|.+|.+. .+++|+|+|+.+...
T Consensus 1 iVIIG~G~AG~~aa~~l~~~~~~~~~Itvi~~e~~~~ 37 (785)
T TIGR02374 1 LVLVGNGMAGHRCIEEVLKLNRHMFEITIFGEEPHPN 37 (785)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCCeEEEEeCCCCCC
Confidence 58999999999999998873 367999999987753
No 301
>KOG2844|consensus
Probab=94.88 E-value=0.041 Score=48.31 Aligned_cols=34 Identities=29% Similarity=0.590 Sum_probs=28.5
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAG 62 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G 62 (146)
...|++|||+|..|+.+|+.|++. |.+ ++++|+.
T Consensus 38 ~~A~vvViggG~~g~~~~yhlak~-g~k~avlle~~ 72 (856)
T KOG2844|consen 38 STADVVVIGGGSLGCSTAYHLAKR-GMKGAVLLERS 72 (856)
T ss_pred CcccEEEEcCCchhHHHHHHHHHc-cccceEEEeee
Confidence 357999999999999999999996 777 5666654
No 302
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=94.87 E-value=0.052 Score=45.32 Aligned_cols=35 Identities=29% Similarity=0.415 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-+++|||+|+.|+-+|..|++. |.+|.++|+++..
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~l 205 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRL-GTKVTIVEMAPQL 205 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCc
Confidence 3799999999999999999986 9999999998764
No 303
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=94.79 E-value=0.055 Score=45.19 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-g~~Vtli~~~~~i 201 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGL-GSETHLVIRHERV 201 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCC
Confidence 3799999999999999999996 9999999998764
No 304
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=94.77 E-value=0.056 Score=45.08 Aligned_cols=35 Identities=20% Similarity=0.382 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-+++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~ 201 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARL-GSEVTILQRSDRL 201 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEEcCCcC
Confidence 4789999999999999999996 9999999998654
No 305
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.77 E-value=0.062 Score=45.29 Aligned_cols=36 Identities=25% Similarity=0.390 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHh--CCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEE--LDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~--~g~~VlvLE~G~~~ 65 (146)
++|.|||+|+.|+.+|.+|.+. +..++.|+|.....
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~ 39 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNF 39 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEecccccc
Confidence 6899999999999999999883 23349999998764
No 306
>KOG3851|consensus
Probab=94.73 E-value=0.036 Score=44.94 Aligned_cols=39 Identities=28% Similarity=0.467 Sum_probs=32.8
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHh-CCCcEEEEecCCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDP 65 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~-~g~~VlvLE~G~~~ 65 (146)
.+++.++|||+|.+|+.+|.++.++ +.-+|-|||-..+.
T Consensus 37 ~~h~kvLVvGGGsgGi~~A~k~~rkl~~g~vgIvep~e~H 76 (446)
T KOG3851|consen 37 RKHFKVLVVGGGSGGIGMAAKFYRKLGSGSVGIVEPAEDH 76 (446)
T ss_pred ccceEEEEEcCCcchhHHHHHHHhhcCCCceEEecchhhc
Confidence 3689999999999999999999874 35589999987653
No 307
>PRK07846 mycothione reductase; Reviewed
Probab=94.70 E-value=0.059 Score=45.03 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-+++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~~~l 201 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSAL-GVRVTVVNRSGRL 201 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcc
Confidence 4799999999999999999995 9999999998764
No 308
>KOG2755|consensus
Probab=94.64 E-value=0.03 Score=44.15 Aligned_cols=34 Identities=44% Similarity=0.652 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~ 64 (146)
.+||||+|.||.++|..|++ .|...+++|-+.+.
T Consensus 1 kfivvgggiagvscaeqla~~~psa~illitass~ 35 (334)
T KOG2755|consen 1 KFIVVGGGIAGVSCAEQLAQLEPSAEILLITASSF 35 (334)
T ss_pred CeEEEcCccccccHHHHHHhhCCCCcEEEEeccHH
Confidence 37999999999999999997 46789999988765
No 309
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.63 E-value=0.06 Score=45.19 Aligned_cols=35 Identities=17% Similarity=0.232 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-+++|||+|+.|+-+|..|++. |.+|.|||+++..
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~-G~~Vtlv~~~~~i 209 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRL-GSEVDVVEMFDQV 209 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCEEEEecCCCC
Confidence 3789999999999999999996 9999999998764
No 310
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=94.60 E-value=0.06 Score=44.24 Aligned_cols=37 Identities=30% Similarity=0.370 Sum_probs=34.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
.||+||+|.|.-=++.+..|+-+ |++|++|++.+..+
T Consensus 6 ~yDvii~GTgl~esils~~Ls~~-~k~VlhiD~Nd~YG 42 (434)
T COG5044 6 LYDVIILGTGLRESILSAALSWD-GKNVLHIDKNDYYG 42 (434)
T ss_pred cccEEEecccHHHHHHHHHhhhc-CceEEEEeCCCccC
Confidence 69999999999999999999997 99999999988764
No 311
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=94.58 E-value=0.043 Score=43.68 Aligned_cols=27 Identities=26% Similarity=0.295 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 39 SAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 39 ~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
.+|+++|++|+++ |++|+|+|+.+..+
T Consensus 1 iaGL~aA~~L~~~-G~~v~vlEa~~r~G 27 (450)
T PF01593_consen 1 IAGLAAAYYLAKA-GYDVTVLEASDRVG 27 (450)
T ss_dssp HHHHHHHHHHHHT-TTEEEEEESSSSSB
T ss_pred ChHHHHHHHHHhC-CCCEEEEEcCCCCC
Confidence 4899999999997 99999999998875
No 312
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=94.53 E-value=0.067 Score=44.02 Aligned_cols=35 Identities=31% Similarity=0.443 Sum_probs=31.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|+-+|..|++. +.+|.++++++..
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~ 172 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRER-GKNVTLIHRSERI 172 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhC-CCcEEEEECCccc
Confidence 3799999999999999999995 9999999998754
No 313
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.49 E-value=0.072 Score=44.65 Aligned_cols=35 Identities=17% Similarity=0.222 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~-G~~Vtlie~~~~i 209 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRL-GAQVTVVEYLDRI 209 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCCC
Confidence 4789999999999999999996 9999999998764
No 314
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=94.46 E-value=0.073 Score=42.27 Aligned_cols=33 Identities=33% Similarity=0.471 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
..+.|||+|.-|...|..|++. |.+|.++.|+.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~-G~~V~lv~r~~ 35 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARA-GLPVRLILRDR 35 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhC-CCCeEEEEech
Confidence 4689999999999999999996 99999999974
No 315
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=94.46 E-value=0.055 Score=38.78 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=28.6
Q ss_pred EEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
+.|+|+|..|..+|..|+++ |++|.|..+..
T Consensus 2 I~ViGaG~~G~AlA~~la~~-g~~V~l~~~~~ 32 (157)
T PF01210_consen 2 IAVIGAGNWGTALAALLADN-GHEVTLWGRDE 32 (157)
T ss_dssp EEEESSSHHHHHHHHHHHHC-TEEEEEETSCH
T ss_pred EEEECcCHHHHHHHHHHHHc-CCEEEEEeccH
Confidence 67999999999999999997 99999998864
No 316
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=94.44 E-value=0.039 Score=45.78 Aligned_cols=38 Identities=45% Similarity=0.733 Sum_probs=31.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCC------------CcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELD------------WRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g------------~~VlvLE~G~~~ 65 (146)
...+++|||+|+.|.=+|.+|++... .+|.|+|+++..
T Consensus 154 ~~lti~IvGgG~TGVElAgeL~~~~~~l~~~~~~~~~~~~V~LVea~p~I 203 (405)
T COG1252 154 ALLTIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAGPRI 203 (405)
T ss_pred ceeEEEEECCChhHHHHHHHHHHHHHHHhhhhcCCccccEEEEEccCchh
Confidence 45689999999999999999987311 389999999875
No 317
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.40 E-value=0.077 Score=44.19 Aligned_cols=35 Identities=23% Similarity=0.340 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~ 207 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASL-GAEVTIVEALPRI 207 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCc
Confidence 3689999999999999999996 9999999998764
No 318
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.39 E-value=0.076 Score=44.38 Aligned_cols=34 Identities=24% Similarity=0.317 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus 174 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtlv~~~~~~ 207 (466)
T PRK07818 174 SIVIAGAGAIGMEFAYVLKNY-GVDVTIVEFLDRA 207 (466)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEecCCCc
Confidence 789999999999999999996 9999999998754
No 319
>PRK06370 mercuric reductase; Validated
Probab=94.32 E-value=0.082 Score=44.11 Aligned_cols=35 Identities=29% Similarity=0.396 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-+++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~ 206 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRF-GSEVTVIERGPRL 206 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCCC
Confidence 3789999999999999999996 9999999998764
No 320
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=94.31 E-value=0.071 Score=44.25 Aligned_cols=40 Identities=28% Similarity=0.322 Sum_probs=35.6
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
++..+|+|.||-|++-+.+|..|.+..+++++.|||.+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 3567899999999999999999999767999999998864
No 321
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=94.19 E-value=0.09 Score=43.72 Aligned_cols=35 Identities=26% Similarity=0.314 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~ 210 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAAL-GVKVTLINTRDRL 210 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCc
Confidence 3699999999999999999996 9999999998764
No 322
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=94.18 E-value=0.078 Score=38.69 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=28.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.-.++|||+|.++.-+|..|++. +.+|.++=|.+
T Consensus 167 ~k~V~VVG~G~SA~d~a~~l~~~-g~~V~~~~R~~ 200 (203)
T PF13738_consen 167 GKRVVVVGGGNSAVDIAYALAKA-GKSVTLVTRSP 200 (203)
T ss_dssp TSEEEEE--SHHHHHHHHHHTTT-CSEEEEEESS-
T ss_pred CCcEEEEcChHHHHHHHHHHHhh-CCEEEEEecCC
Confidence 35899999999999999999997 89999998765
No 323
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=94.17 E-value=0.081 Score=43.95 Aligned_cols=34 Identities=21% Similarity=0.264 Sum_probs=31.0
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 150 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~~l 183 (438)
T PRK13512 150 KALVVGAGYISLEVLENLYER-GLHPTLIHRSDKI 183 (438)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEeccccc
Confidence 789999999999999999996 9999999998653
No 324
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=94.16 E-value=0.1 Score=41.42 Aligned_cols=33 Identities=18% Similarity=0.304 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
..+.|||+|.-|+..|..|+++ |+.|.++.++.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~-g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARA-GFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeCC
Confidence 4699999999999999999996 99999999875
No 325
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=94.03 E-value=0.099 Score=43.46 Aligned_cols=35 Identities=29% Similarity=0.443 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~ 204 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRL-GVKVTVFERGDRI 204 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCc
Confidence 3799999999999999999996 9999999998754
No 326
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=93.92 E-value=0.1 Score=43.03 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|+.|+-+|..|++. |.+|.++|+++..
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~-g~~Vtli~~~~~~ 184 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHL-GKNVRIIQLEDRI 184 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCcEEEEeCCccc
Confidence 4799999999999999999986 9999999998653
No 327
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=93.90 E-value=0.11 Score=38.23 Aligned_cols=32 Identities=19% Similarity=0.444 Sum_probs=27.3
Q ss_pred EEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+.|||+|..|...|..++.. |++|.++|..+.
T Consensus 2 V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~ 33 (180)
T PF02737_consen 2 VAVIGAGTMGRGIAALFARA-GYEVTLYDRSPE 33 (180)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEE-SSHH
T ss_pred EEEEcCCHHHHHHHHHHHhC-CCcEEEEECChH
Confidence 67999999999999999996 999999998654
No 328
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=93.86 E-value=0.11 Score=43.40 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|+.|+-+|..|++. |.+|.++|+++..
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~l 204 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSAL-GTRVTIVNRSTKL 204 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhC-CCcEEEEEccCcc
Confidence 3799999999999999999996 9999999998764
No 329
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.75 E-value=0.15 Score=42.97 Aligned_cols=35 Identities=29% Similarity=0.460 Sum_probs=32.2
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
.++|||+|.-|+=.|.-+++- |.+|.|||+++..-
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~L-G~~VTiie~~~~iL 209 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAAL-GSKVTVVERGDRIL 209 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCcEEEEecCCCCC
Confidence 589999999999999999995 99999999998753
No 330
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=93.72 E-value=0.1 Score=41.35 Aligned_cols=32 Identities=25% Similarity=0.323 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
++.|||+|..|...|..|+++ |++|.++++.+
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~-G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARA-GHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHC-CCeeEEEeCCH
Confidence 588999999999999999996 99999999864
No 331
>KOG0404|consensus
Probab=93.71 E-value=0.082 Score=41.01 Aligned_cols=33 Identities=24% Similarity=0.311 Sum_probs=30.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
-.++|||+|+++-.+|..++++ ..|.+|.|-..
T Consensus 9 e~v~IiGSGPAa~tAAiYaara-elkPllfEG~~ 41 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARA-ELKPLLFEGMM 41 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhc-ccCceEEeeee
Confidence 4899999999999999999996 99999999753
No 332
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=93.69 E-value=0.11 Score=40.60 Aligned_cols=30 Identities=27% Similarity=0.491 Sum_probs=28.0
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~ 61 (146)
.+.|||+|..|...|..|+++ |++|.++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~-g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEA-GRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCceEEEec
Confidence 478999999999999999996 999999988
No 333
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.65 E-value=0.12 Score=43.37 Aligned_cols=33 Identities=27% Similarity=0.448 Sum_probs=29.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
-.++|||+|..|..+|..|.++ |.+|.++|+.+
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~-G~~V~~~d~~~ 49 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLEL-GARVTVVDDGD 49 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 3699999999999999999986 99999999764
No 334
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=93.64 E-value=0.13 Score=42.78 Aligned_cols=34 Identities=26% Similarity=0.284 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 168 ~vvVIGgG~~g~E~A~~l~~~-G~~Vtli~~~~~~ 201 (446)
T TIGR01424 168 SILILGGGYIAVEFAGIWRGL-GVQVTLIYRGELI 201 (446)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEeCCCC
Confidence 689999999999999999986 9999999998764
No 335
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=93.50 E-value=0.14 Score=42.95 Aligned_cols=35 Identities=20% Similarity=0.198 Sum_probs=31.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|+-+|..|++. +.+|.|+|+++..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~ 218 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRL-GAEVTILEALPAF 218 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEeCCCcc
Confidence 3789999999999999999996 9999999998754
No 336
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=93.37 E-value=0.16 Score=42.61 Aligned_cols=34 Identities=29% Similarity=0.471 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~-g~~Vtli~~~~~~ 212 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTEL-GVKVTLVSSRDRV 212 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEEcCCcC
Confidence 689999999999999999996 9999999998764
No 337
>PRK10262 thioredoxin reductase; Provisional
Probab=93.36 E-value=0.15 Score=40.32 Aligned_cols=35 Identities=26% Similarity=0.231 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|+-+|..|++. +++|.++++.+..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~-~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNI-ASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhh-CCEEEEEEECCcc
Confidence 3789999999999999999996 8999999998643
No 338
>PLN02507 glutathione reductase
Probab=93.35 E-value=0.15 Score=43.24 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus 205 ~vvVIGgG~ig~E~A~~l~~~-G~~Vtli~~~~~~ 238 (499)
T PLN02507 205 RAVVLGGGYIAVEFASIWRGM-GATVDLFFRKELP 238 (499)
T ss_pred eEEEECCcHHHHHHHHHHHHc-CCeEEEEEecCCc
Confidence 799999999999999999986 9999999998754
No 339
>PRK06116 glutathione reductase; Validated
Probab=93.34 E-value=0.16 Score=42.23 Aligned_cols=35 Identities=23% Similarity=0.266 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|+-+|..|++. |.+|.++++++..
T Consensus 168 ~~vvViGgG~~g~E~A~~l~~~-g~~Vtlv~~~~~~ 202 (450)
T PRK06116 168 KRVAVVGAGYIAVEFAGVLNGL-GSETHLFVRGDAP 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCeEEEEecCCCC
Confidence 3789999999999999999996 9999999998754
No 340
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.33 E-value=0.14 Score=39.87 Aligned_cols=31 Identities=23% Similarity=0.478 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
.+.|||+|..|...|..|++. |++|.++.+.
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~-g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQA-GHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECC
Confidence 478999999999999999996 9999999983
No 341
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=93.33 E-value=0.19 Score=33.50 Aligned_cols=32 Identities=28% Similarity=0.515 Sum_probs=28.1
Q ss_pred EEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+||+|.|..|..++..|.+. +.+|+++|..+.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~-~~~vvvid~d~~ 32 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEG-GIDVVVIDRDPE 32 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHT-TSEEEEEESSHH
T ss_pred eEEEcCCHHHHHHHHHHHhC-CCEEEEEECCcH
Confidence 68999999999999999994 789999999864
No 342
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=93.17 E-value=0.15 Score=43.39 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|+-+|..|++. +.+|.++|+++..
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~-g~~Vtli~~~~~l 387 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGI-VRHVTVLEFADEL 387 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhc-CcEEEEEEeCCcC
Confidence 3899999999999999999985 8999999987654
No 343
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=93.03 E-value=0.19 Score=41.61 Aligned_cols=34 Identities=26% Similarity=0.350 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus 160 ~v~ViGgG~~g~E~A~~l~~~-g~~Vtli~~~~~~ 193 (441)
T PRK08010 160 HLGILGGGYIGVEFASMFANF-GSKVTILEAASLF 193 (441)
T ss_pred eEEEECCCHHHHHHHHHHHHC-CCeEEEEecCCCC
Confidence 789999999999999999996 9999999998654
No 344
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.98 E-value=0.16 Score=43.67 Aligned_cols=35 Identities=31% Similarity=0.329 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|+-+|..|++. +.+|.++++++..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~-g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRY-ASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHcc-CCEEEEEEeCCcc
Confidence 3799999999999999999986 9999999998753
No 345
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.87 E-value=0.19 Score=38.61 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=31.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|+-+|..|++. +.+|.++++++..
T Consensus 142 ~~v~ViG~G~~~~e~a~~l~~~-~~~V~~v~~~~~~ 176 (300)
T TIGR01292 142 KEVAVVGGGDSAIEEALYLTRI-AKKVTLVHRRDKF 176 (300)
T ss_pred CEEEEECCChHHHHHHHHHHhh-cCEEEEEEeCccc
Confidence 3799999999999999999986 8999999998653
No 346
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=92.83 E-value=0.18 Score=44.37 Aligned_cols=34 Identities=21% Similarity=0.122 Sum_probs=31.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~-G~eVTLIe~~~~l 347 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTAL-GSEVVSFEYSPQL 347 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhC-CCeEEEEeccCcc
Confidence 789999999999999999996 9999999998764
No 347
>PRK13748 putative mercuric reductase; Provisional
Probab=92.76 E-value=0.19 Score=42.89 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.++|||+|..|+-+|..|++. |.+|.|+|+..
T Consensus 272 ~vvViGgG~ig~E~A~~l~~~-g~~Vtli~~~~ 303 (561)
T PRK13748 272 RLAVIGSSVVALELAQAFARL-GSKVTILARST 303 (561)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEecCc
Confidence 699999999999999999996 99999999853
No 348
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.71 E-value=0.2 Score=42.60 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=31.7
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-+++|||+|..|.-+|..|+.. +++|.|+++++..
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~-~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGI-VKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhc-CCEEEEEEECccc
Confidence 3899999999999999999996 8999999998754
No 349
>PTZ00058 glutathione reductase; Provisional
Probab=92.71 E-value=0.19 Score=43.39 Aligned_cols=35 Identities=17% Similarity=0.149 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|+-+|..|++. |.+|.++|+++..
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~-G~~Vtli~~~~~i 272 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRL-GAESYIFARGNRL 272 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCcEEEEEecccc
Confidence 3689999999999999999996 9999999998754
No 350
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=92.71 E-value=0.16 Score=37.59 Aligned_cols=33 Identities=24% Similarity=0.430 Sum_probs=26.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+.|||.|..|+.+|..|+++ |++|+-+|..+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~-G~~V~g~D~~~~ 34 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEK-GHQVIGVDIDEE 34 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHT-TSEEEEE-S-HH
T ss_pred EEEEECCCcchHHHHHHHHhC-CCEEEEEeCChH
Confidence 467999999999999999997 999999998765
No 351
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=92.71 E-value=0.18 Score=41.91 Aligned_cols=33 Identities=21% Similarity=0.421 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+.|||.|.+|..+|.-|.++ |++|.+.|+...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~-G~~V~~~D~~~~ 34 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQ-GWEVVVSDRNDS 34 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHC-CCEEEEECCCCc
Confidence 378999999999999999986 999999998754
No 352
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=92.65 E-value=0.18 Score=45.14 Aligned_cols=34 Identities=24% Similarity=0.258 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus 142 ~vvVVGgG~~GlE~A~~L~~~-G~~Vtvv~~~~~l 175 (785)
T TIGR02374 142 KAAVIGGGLLGLEAAVGLQNL-GMDVSVIHHAPGL 175 (785)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCeEEEEccCCch
Confidence 689999999999999999996 9999999998654
No 353
>PRK14694 putative mercuric reductase; Provisional
Probab=92.57 E-value=0.22 Score=41.67 Aligned_cols=32 Identities=16% Similarity=0.303 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.++|||+|+.|+-+|..|++. +.+|.+++++.
T Consensus 180 ~vvViG~G~~G~E~A~~l~~~-g~~Vtlv~~~~ 211 (468)
T PRK14694 180 RLLVIGASVVALELAQAFARL-GSRVTVLARSR 211 (468)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEECCC
Confidence 789999999999999999996 99999999753
No 354
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.50 E-value=0.23 Score=38.97 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+.|||+|..|...|..|+++ |++|.++++.+
T Consensus 5 kIaViGaG~mG~~iA~~la~~-G~~V~l~d~~~ 36 (287)
T PRK08293 5 NVTVAGAGVLGSQIAFQTAFH-GFDVTIYDISD 36 (287)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 588999999999999999996 99999998764
No 355
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.49 E-value=0.22 Score=38.97 Aligned_cols=32 Identities=19% Similarity=0.426 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+.|||+|..|..+|..|+++ |++|.++++.+
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~-G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVS-GFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhC-CCcEEEEeCCH
Confidence 478999999999999999996 99999998764
No 356
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=92.39 E-value=0.23 Score=39.65 Aligned_cols=32 Identities=31% Similarity=0.467 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+.|||+|..|...|..|+++ |++|.++++..
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~-G~~V~~~~r~~ 35 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAA-GADVTLIGRAR 35 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhc-CCcEEEEecHH
Confidence 589999999999999999996 99999999864
No 357
>PRK14727 putative mercuric reductase; Provisional
Probab=92.34 E-value=0.23 Score=41.71 Aligned_cols=31 Identities=16% Similarity=0.309 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
.++|||+|..|+-+|..|++. |.+|.++++.
T Consensus 190 ~vvVIGgG~iG~E~A~~l~~~-G~~Vtlv~~~ 220 (479)
T PRK14727 190 SLTVIGSSVVAAEIAQAYARL-GSRVTILARS 220 (479)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCEEEEEEcC
Confidence 699999999999999999986 9999999985
No 358
>PLN02546 glutathione reductase
Probab=92.33 E-value=0.23 Score=42.82 Aligned_cols=35 Identities=20% Similarity=0.144 Sum_probs=31.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-+++|||+|..|+-+|..|++. +.+|.|+|+++..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~-g~~Vtlv~~~~~i 287 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGL-KSDVHVFIRQKKV 287 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhc-CCeEEEEEecccc
Confidence 3799999999999999999985 9999999998754
No 359
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=92.28 E-value=0.25 Score=40.87 Aligned_cols=35 Identities=34% Similarity=0.697 Sum_probs=30.2
Q ss_pred cEEEECCCHHHHHHHHHHHHh-------------CCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEE-------------LDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~-------------~g~~VlvLE~G~~~ 65 (146)
.++|||+|+.|+-+|.+|++. .+.+|.|+|+++..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~l 222 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEV 222 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcc
Confidence 799999999999999999862 36899999998764
No 360
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=91.82 E-value=0.3 Score=39.26 Aligned_cols=32 Identities=19% Similarity=0.096 Sum_probs=28.4
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~ 63 (146)
.++|||+|..|+-+|..|.+. +.+ |.|+++.+
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~-g~~~Vtvi~~~~ 206 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLL-GAEKVYLAYRRT 206 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCeEEEEeecc
Confidence 689999999999999999885 776 99999865
No 361
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=91.81 E-value=0.27 Score=44.51 Aligned_cols=34 Identities=26% Similarity=0.199 Sum_probs=31.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.++|||+|..|+-+|..|++. |.+|.|+|+++..
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~-G~~VtvVe~~~~l 180 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNL-GVETHVIEFAPML 180 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCeEEEEeccccc
Confidence 589999999999999999996 9999999998753
No 362
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.78 E-value=0.29 Score=38.94 Aligned_cols=32 Identities=31% Similarity=0.361 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+.|||+|.-|...|..|+++ |++|.++.+..
T Consensus 2 kI~IiGaGa~G~ala~~L~~~-g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSK-KISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHC-CCeEEEEecCH
Confidence 378999999999999999996 99999999843
No 363
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.71 E-value=0.79 Score=37.53 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=29.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
..+++|||+|..|..+|..+... |.+|.++++..
T Consensus 167 ~~~VlViGaG~vG~~aa~~a~~l-Ga~V~v~d~~~ 200 (370)
T TIGR00518 167 PGDVTIIGGGVVGTNAAKMANGL-GATVTILDINI 200 (370)
T ss_pred CceEEEEcCCHHHHHHHHHHHHC-CCeEEEEECCH
Confidence 45799999999999999999886 88999998753
No 364
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=91.70 E-value=0.3 Score=41.29 Aligned_cols=31 Identities=16% Similarity=0.150 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
.++|||+|..|+-+|..|++. |.+|.++++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGI-GLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHh-CCcEEEEEec
Confidence 689999999999999999996 9999999974
No 365
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.67 E-value=0.31 Score=38.41 Aligned_cols=33 Identities=27% Similarity=0.377 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+-|||+|..|...|..++.+ |+.|.++|..+.
T Consensus 7 ~V~ViGaG~mG~~iA~~~a~~-G~~V~l~d~~~~ 39 (286)
T PRK07819 7 RVGVVGAGQMGAGIAEVCARA-GVDVLVFETTEE 39 (286)
T ss_pred EEEEEcccHHHHHHHHHHHhC-CCEEEEEECCHH
Confidence 578999999999999999996 999999998765
No 366
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=91.65 E-value=0.32 Score=40.62 Aligned_cols=34 Identities=15% Similarity=0.142 Sum_probs=30.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
-.++|||+|..|+-+|..|.+. |.+|.++++...
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~-G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRL-GAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCEEEEEeecCc
Confidence 3799999999999999999996 899999999854
No 367
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=91.61 E-value=0.38 Score=37.71 Aligned_cols=33 Identities=21% Similarity=0.331 Sum_probs=29.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
-.+.|||+|..|..+|..|+++ |++|.+.++.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~-G~~V~l~d~~~ 37 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALA-GYDVLLNDVSA 37 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 3588999999999999999996 99999998753
No 368
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=91.61 E-value=0.32 Score=40.29 Aligned_cols=34 Identities=26% Similarity=0.402 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.-.++|+|+|..|..+|..|++. |++|.+.|+..
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~-G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKL-GAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCc
Confidence 35689999999999999999997 99999999864
No 369
>PTZ00052 thioredoxin reductase; Provisional
Probab=91.39 E-value=0.32 Score=41.21 Aligned_cols=31 Identities=26% Similarity=0.273 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
+++|||+|..|+-+|..|++. |.+|.|+++.
T Consensus 184 ~vvIIGgG~iG~E~A~~l~~~-G~~Vtli~~~ 214 (499)
T PTZ00052 184 KTLIVGASYIGLETAGFLNEL-GFDVTVAVRS 214 (499)
T ss_pred eEEEECCCHHHHHHHHHHHHc-CCcEEEEEcC
Confidence 789999999999999999996 9999999974
No 370
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=91.28 E-value=0.42 Score=38.13 Aligned_cols=32 Identities=22% Similarity=0.236 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+.|||+|..|...|..|+++ |++|.++++..
T Consensus 6 ~I~iIG~G~mG~~ia~~L~~~-G~~V~~~~r~~ 37 (328)
T PRK14618 6 RVAVLGAGAWGTALAVLAASK-GVPVRLWARRP 37 (328)
T ss_pred eEEEECcCHHHHHHHHHHHHC-CCeEEEEeCCH
Confidence 589999999999999999996 99999999853
No 371
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=91.06 E-value=0.32 Score=38.86 Aligned_cols=33 Identities=27% Similarity=0.539 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+.|+|+|.-|+..|++|+++ |..|+++-|.+.
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~-g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKA-GHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhC-CCeEEEEecHHH
Confidence 478999999999999999997 799999988874
No 372
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.02 E-value=0.43 Score=35.78 Aligned_cols=33 Identities=24% Similarity=0.324 Sum_probs=29.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
.-.++|||+|..|...|..|.+. |.+|.|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~-ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKY-GAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCeEEEEcCC
Confidence 45799999999999999999996 8999999764
No 373
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=90.81 E-value=0.44 Score=37.40 Aligned_cols=33 Identities=18% Similarity=0.399 Sum_probs=29.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+.|||+|..|...|..|+++ |++|.++|+-+.
T Consensus 5 ~I~ViGaG~mG~~iA~~la~~-G~~V~l~d~~~~ 37 (291)
T PRK06035 5 VIGVVGSGVMGQGIAQVFART-GYDVTIVDVSEE 37 (291)
T ss_pred EEEEECccHHHHHHHHHHHhc-CCeEEEEeCCHH
Confidence 478999999999999999996 999999987643
No 374
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.73 E-value=0.44 Score=38.39 Aligned_cols=32 Identities=19% Similarity=0.302 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+-|||+|..|...|..++.+ |+.|.+.|.-+
T Consensus 9 ~VaVIGaG~MG~giA~~~a~a-G~~V~l~D~~~ 40 (321)
T PRK07066 9 TFAAIGSGVIGSGWVARALAH-GLDVVAWDPAP 40 (321)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 588999999999999999996 99999999864
No 375
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=90.72 E-value=0.45 Score=40.52 Aligned_cols=36 Identities=25% Similarity=0.151 Sum_probs=31.1
Q ss_pred ccEEEECCCHHHHHHHHHHHH---hCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSE---ELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~---~~g~~VlvLE~G~~~ 65 (146)
-++-|||+|.|++++|.-|-+ .+|.++.|||+-+..
T Consensus 3 ~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~ 41 (500)
T PF06100_consen 3 KKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVP 41 (500)
T ss_pred ceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCC
Confidence 467899999999999999987 468899999997654
No 376
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=90.63 E-value=0.38 Score=40.73 Aligned_cols=36 Identities=19% Similarity=0.144 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHHH--hCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSE--ELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~--~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|+-+|..++. ..|.+|.|+|+++..
T Consensus 188 ~~vvIIGgG~iG~E~A~~~~~l~~~G~~Vtli~~~~~i 225 (486)
T TIGR01423 188 RRVLTVGGGFISVEFAGIFNAYKPRGGKVTLCYRNNMI 225 (486)
T ss_pred CeEEEECCCHHHHHHHHHHHHhccCCCeEEEEecCCcc
Confidence 369999999999999976543 128999999998764
No 377
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=90.62 E-value=0.5 Score=34.00 Aligned_cols=31 Identities=23% Similarity=0.299 Sum_probs=27.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEe
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE 60 (146)
.-.++|||+|..|..-|..|.+. |.+|.|+.
T Consensus 13 ~~~vlVvGGG~va~rka~~Ll~~-ga~V~VIs 43 (157)
T PRK06719 13 NKVVVIIGGGKIAYRKASGLKDT-GAFVTVVS 43 (157)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEc
Confidence 45799999999999999999996 99999994
No 378
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=90.41 E-value=0.53 Score=40.41 Aligned_cols=35 Identities=23% Similarity=0.384 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+-++||+|.|.-|..+|.+|.++ |++|+++|+.++
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~-g~~vvvId~d~~ 451 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAA-GIPLVVIETSRT 451 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHC-CCCEEEEECCHH
Confidence 46899999999999999999996 999999998754
No 379
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=90.32 E-value=0.51 Score=37.18 Aligned_cols=32 Identities=28% Similarity=0.360 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+.|||+|..|..+|..|++. |+.|.++++.+
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~-g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARN-GHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCEEEEEECCH
Confidence 588999999999999999996 99999999864
No 380
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.00 E-value=0.56 Score=36.58 Aligned_cols=31 Identities=16% Similarity=0.427 Sum_probs=28.2
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
.+.|||+|..|...|..++++ |+.|+++|..
T Consensus 5 kI~VIG~G~mG~~ia~~la~~-g~~V~~~d~~ 35 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVA-GYDVVMVDIS 35 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHC-CCceEEEeCC
Confidence 588999999999999999996 9999999854
No 381
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=89.96 E-value=0.66 Score=36.61 Aligned_cols=32 Identities=25% Similarity=0.515 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+.|||+|..|...|..|++. |++|.++++..
T Consensus 6 ~I~vIGaG~mG~~iA~~l~~~-g~~V~~~d~~~ 37 (311)
T PRK06130 6 NLAIIGAGTMGSGIAALFARK-GLQVVLIDVME 37 (311)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEECCH
Confidence 588999999999999999996 99999998643
No 382
>PRK12831 putative oxidoreductase; Provisional
Probab=89.96 E-value=0.55 Score=39.47 Aligned_cols=34 Identities=18% Similarity=0.192 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
-.++|||+|..|.-+|..|.+. |.+|.++++...
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~-Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRL-GAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHc-CCEEEEEeecCc
Confidence 4899999999999999999996 888999998754
No 383
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.44 E-value=0.72 Score=36.52 Aligned_cols=33 Identities=27% Similarity=0.328 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
..+.|||+|..|..+|..|+++ |++|.+..+..
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~-G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASAN-GHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHC-CCEEEEEeCCC
Confidence 4688999999999999999996 99999998864
No 384
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.39 E-value=0.62 Score=38.49 Aligned_cols=32 Identities=41% Similarity=0.591 Sum_probs=29.2
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
+++|+|.|..|..+|..|.++ |+.|.++|+.+
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~-g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGE-NNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCcEEEEECCH
Confidence 589999999999999999996 99999999854
No 385
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.23 E-value=0.73 Score=34.42 Aligned_cols=33 Identities=24% Similarity=0.331 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
-.++|+|.|..|..+|..|.+. |.+|++.+...
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~-G~~Vvv~D~~~ 61 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEE-GAKLIVADINE 61 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHC-CCEEEEEcCCH
Confidence 4699999999999999999996 99999988753
No 386
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=88.99 E-value=0.6 Score=38.53 Aligned_cols=33 Identities=21% Similarity=0.311 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+-|||.|..|..+|..|+++ |++|+++++.+.
T Consensus 2 kI~vIGlG~~G~~lA~~La~~-G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADL-GHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhc-CCeEEEEECCHH
Confidence 478999999999999999996 999999998654
No 387
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=88.89 E-value=0.69 Score=38.29 Aligned_cols=34 Identities=24% Similarity=0.555 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+++|||+|.-|.++|+.|++....+|++.+|-..
T Consensus 3 ~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~ 36 (389)
T COG1748 3 KILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE 36 (389)
T ss_pred cEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH
Confidence 6899999999999999999963389999988743
No 388
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=88.86 E-value=1 Score=31.34 Aligned_cols=35 Identities=14% Similarity=0.286 Sum_probs=29.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~ 63 (146)
....++|||+|-+|..++..|.+. |.+ +.|+-|-.
T Consensus 11 ~~~~vlviGaGg~ar~v~~~L~~~-g~~~i~i~nRt~ 46 (135)
T PF01488_consen 11 KGKRVLVIGAGGAARAVAAALAAL-GAKEITIVNRTP 46 (135)
T ss_dssp TTSEEEEESSSHHHHHHHHHHHHT-TSSEEEEEESSH
T ss_pred CCCEEEEECCHHHHHHHHHHHHHc-CCCEEEEEECCH
Confidence 356899999999999999999997 665 99988753
No 389
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=88.82 E-value=0.58 Score=39.43 Aligned_cols=33 Identities=12% Similarity=0.274 Sum_probs=30.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.++|||+|..|+=.|.+|++. .++|.++.+++.
T Consensus 206 ~VvVVG~G~Sg~diA~~L~~~-a~~V~l~~r~~~ 238 (461)
T PLN02172 206 VVVVIGNFASGADISRDIAKV-AKEVHIASRASE 238 (461)
T ss_pred EEEEECCCcCHHHHHHHHHHh-CCeEEEEEeecc
Confidence 699999999999999999996 889999998654
No 390
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=88.68 E-value=0.69 Score=38.41 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=30.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
..+.|||.|..|+.+|..|+++ |++|..+++.+.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~-G~~V~~~D~~~~ 37 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASR-QKQVIGVDINQH 37 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhC-CCEEEEEeCCHH
Confidence 3588999999999999999997 999999987544
No 391
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=88.65 E-value=0.8 Score=35.92 Aligned_cols=32 Identities=22% Similarity=0.360 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+.|||+|..|...|..|+++ |+.|.+.|+.+
T Consensus 6 ~V~vIG~G~mG~~iA~~l~~~-G~~V~~~d~~~ 37 (295)
T PLN02545 6 KVGVVGAGQMGSGIAQLAAAA-GMDVWLLDSDP 37 (295)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCeEEEEeCCH
Confidence 488999999999999999996 99999998754
No 392
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=88.45 E-value=1 Score=32.48 Aligned_cols=34 Identities=15% Similarity=0.169 Sum_probs=28.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
...++|+|+|..|.-+|.-+... |.+|.++|...
T Consensus 20 p~~vvv~G~G~vg~gA~~~~~~l-Ga~v~~~d~~~ 53 (168)
T PF01262_consen 20 PAKVVVTGAGRVGQGAAEIAKGL-GAEVVVPDERP 53 (168)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHT-T-EEEEEESSH
T ss_pred CeEEEEECCCHHHHHHHHHHhHC-CCEEEeccCCH
Confidence 46899999999999999988886 99999999864
No 393
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=88.42 E-value=0.85 Score=38.06 Aligned_cols=34 Identities=18% Similarity=0.277 Sum_probs=29.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~ 64 (146)
-.++|||+|..|.-+|..|.+. |. +|.++++.+.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~-G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRL-GAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCCeEEEeeecCc
Confidence 4799999999999999999986 66 8999998643
No 394
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.23 E-value=0.81 Score=39.09 Aligned_cols=33 Identities=24% Similarity=0.455 Sum_probs=29.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+-|||+|..|.-.|..++++ |+.|.+.|+.+.
T Consensus 7 kV~VIGaG~MG~gIA~~la~a-G~~V~l~d~~~e 39 (503)
T TIGR02279 7 TVAVIGAGAMGAGIAQVAASA-GHQVLLYDIRAE 39 (503)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 588999999999999999996 999999987643
No 395
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=88.16 E-value=0.95 Score=34.02 Aligned_cols=33 Identities=21% Similarity=0.237 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
-.++|||+|..|..-+..|.+. |.+|.|+....
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~-ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKA-GAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 4799999999999999999996 99999997643
No 396
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=87.98 E-value=0.9 Score=37.55 Aligned_cols=35 Identities=40% Similarity=0.566 Sum_probs=31.1
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.-.++|+|.|..|..+|..|.+. +..|+++|+-+.
T Consensus 231 ~~~iiIiG~G~~g~~l~~~L~~~-~~~v~vid~~~~ 265 (453)
T PRK09496 231 VKRVMIVGGGNIGYYLAKLLEKE-GYSVKLIERDPE 265 (453)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCeEEEEECCHH
Confidence 45799999999999999999996 999999988653
No 397
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=87.95 E-value=0.98 Score=35.97 Aligned_cols=31 Identities=29% Similarity=0.540 Sum_probs=27.4
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCC-cEEEEecC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDW-RVLLIEAG 62 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G 62 (146)
.+.|||+|..|...|..|+.+ |+ .|+++|.-
T Consensus 3 KV~VIGaG~vG~~iA~~la~~-g~~~VvlvDi~ 34 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEK-ELADLVLLDVV 34 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCC
Confidence 578999999999999999996 65 79999983
No 398
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=87.94 E-value=1 Score=33.89 Aligned_cols=32 Identities=22% Similarity=0.356 Sum_probs=28.0
Q ss_pred cEEEEC-CCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVG-GGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG-~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+.||| +|..|..+|..|+++ |++|.+..+.+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~-G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA-GNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC-CCEEEEEEcCH
Confidence 378997 799999999999996 89999988764
No 399
>PRK04148 hypothetical protein; Provisional
Probab=87.89 E-value=0.61 Score=32.93 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=28.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
-.+++||-| .|..+|..|++. |+.|+.+|-.+.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~-G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKES-GFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHC-CCEEEEEECCHH
Confidence 469999999 887779999996 999999997755
No 400
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=87.88 E-value=1.1 Score=35.31 Aligned_cols=37 Identities=22% Similarity=0.256 Sum_probs=32.0
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~~ 65 (146)
....++|||.|-.|+.+|..|++. | .++.|+|.....
T Consensus 29 ~~s~VlVvG~GGVGs~vae~Lar~-GVg~itLiD~D~V~ 66 (268)
T PRK15116 29 ADAHICVVGIGGVGSWAAEALART-GIGAITLIDMDDVC 66 (268)
T ss_pred cCCCEEEECcCHHHHHHHHHHHHc-CCCEEEEEeCCEec
Confidence 467899999999999999999996 6 799999976543
No 401
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=87.88 E-value=1 Score=35.86 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~~ 64 (146)
.+.|||+|..|..+|..|+++ + ..+.++|+...
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~-g~~~ev~l~D~~~~ 36 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLR-GLASEIVLVDINKA 36 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHc-CCCCEEEEEECCch
Confidence 488999999999999999996 6 58999998653
No 402
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.79 E-value=1.1 Score=33.59 Aligned_cols=34 Identities=21% Similarity=0.350 Sum_probs=30.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAG 62 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G 62 (146)
....+.|||.|--|+..|..|++. |. ++.++|..
T Consensus 20 ~~~~V~IvG~GglGs~ia~~La~~-Gvg~i~lvD~D 54 (200)
T TIGR02354 20 EQATVAICGLGGLGSNVAINLARA-GIGKLILVDFD 54 (200)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHc-CCCEEEEECCC
Confidence 456899999999999999999996 77 69998887
No 403
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.41 E-value=1.1 Score=36.35 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=30.8
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~ 63 (146)
....++|||.|.-|+.+|..|++. |. ++.|+|...
T Consensus 23 ~~~~VlIiG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (338)
T PRK12475 23 REKHVLIVGAGALGAANAEALVRA-GIGKLTIADRDY 58 (338)
T ss_pred cCCcEEEECCCHHHHHHHHHHHHc-CCCEEEEEcCCc
Confidence 456899999999999999999996 76 888898875
No 404
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=87.15 E-value=1 Score=37.45 Aligned_cols=33 Identities=21% Similarity=0.375 Sum_probs=29.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+-|||+|..|++.|.-|++. ||.|+.+|--..
T Consensus 2 kI~viGtGYVGLv~g~~lA~~-GHeVv~vDid~~ 34 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAEL-GHEVVCVDIDES 34 (414)
T ss_pred ceEEECCchHHHHHHHHHHHc-CCeEEEEeCCHH
Confidence 467999999999999999997 999999998654
No 405
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=87.03 E-value=0.65 Score=30.80 Aligned_cols=33 Identities=30% Similarity=0.371 Sum_probs=28.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
...++|||+|..|..-+..|.+. |.+|.|+...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~-gA~v~vis~~ 39 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEA-GAKVTVISPE 39 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCC-TBEEEEEESS
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEECCc
Confidence 45799999999999999999996 8999999776
No 406
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=86.99 E-value=1 Score=35.18 Aligned_cols=32 Identities=25% Similarity=0.187 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+.|||.|..|..+|..|.++ |++|.++++.+
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~-g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSL-GHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 478999999999999999996 89999998754
No 407
>KOG2852|consensus
Probab=86.91 E-value=0.27 Score=39.49 Aligned_cols=36 Identities=28% Similarity=0.410 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhC-----CCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEEL-----DWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~-----g~~VlvLE~G~~ 64 (146)
.-.++|||+|..|+-+|+-|++++ ...+.++|...-
T Consensus 10 sk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~I 50 (380)
T KOG2852|consen 10 SKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEI 50 (380)
T ss_pred ceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccc
Confidence 368999999999999999999963 278999998643
No 408
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=86.90 E-value=1.7 Score=27.72 Aligned_cols=33 Identities=24% Similarity=0.414 Sum_probs=28.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEec
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~ 61 (146)
.-.++|+|.|..|..++..|.+..+.++.+.++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 457999999999999999999854678888887
No 409
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=86.74 E-value=1.8 Score=29.85 Aligned_cols=35 Identities=20% Similarity=0.393 Sum_probs=29.1
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~~ 65 (146)
..++|+|.|.-|+.+|..|++. |. ++.|+|.....
T Consensus 3 ~~v~iiG~G~vGs~va~~L~~~-Gv~~i~lvD~d~v~ 38 (135)
T PF00899_consen 3 KRVLIIGAGGVGSEVAKNLARS-GVGKITLVDDDIVE 38 (135)
T ss_dssp -EEEEESTSHHHHHHHHHHHHH-TTSEEEEEESSBB-
T ss_pred CEEEEECcCHHHHHHHHHHHHh-CCCceeecCCccee
Confidence 4689999999999999999997 55 78999887543
No 410
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=86.70 E-value=1 Score=37.69 Aligned_cols=35 Identities=20% Similarity=0.281 Sum_probs=31.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-+|+|||+|.+|.-.|.+|++. +.+|.++=|.+..
T Consensus 176 KrV~VIG~GaSA~di~~~l~~~-ga~vt~~qRs~~~ 210 (443)
T COG2072 176 KRVLVIGAGASAVDIAPELAEV-GASVTLSQRSPPH 210 (443)
T ss_pred CeEEEECCCccHHHHHHHHHhc-CCeeEEEecCCCc
Confidence 4899999999999999999997 7999999888764
No 411
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=86.46 E-value=1.2 Score=39.72 Aligned_cols=34 Identities=18% Similarity=0.216 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~~ 64 (146)
-.++|||+|..|.-+|..+.+. |.+ |.++++.+.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~-Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRL-GAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHc-CCCeEEEeeecCc
Confidence 3799999999999999999886 776 999998754
No 412
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.32 E-value=1.5 Score=35.52 Aligned_cols=36 Identities=19% Similarity=0.321 Sum_probs=31.6
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG 63 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~ 63 (146)
.....++|||+|--|+.+|..|++. |. ++.++|...
T Consensus 22 L~~~~VlVvG~GglGs~va~~La~a-Gvg~i~lvD~D~ 58 (339)
T PRK07688 22 LREKHVLIIGAGALGTANAEMLVRA-GVGKVTIVDRDY 58 (339)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHc-CCCeEEEEeCCc
Confidence 3467899999999999999999997 66 899999864
No 413
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=86.23 E-value=1.1 Score=39.88 Aligned_cols=34 Identities=15% Similarity=0.251 Sum_probs=30.4
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
-.+.|||+|..|.-.|..++.+ |++|.++|....
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~ 347 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASK-GVPVIMKDINQK 347 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 3588999999999999999996 999999998754
No 414
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=86.22 E-value=1.2 Score=38.01 Aligned_cols=33 Identities=27% Similarity=0.459 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+-|||+|..|.-.|..|+++ |+.|.+.|+.+.
T Consensus 9 ~V~VIGaG~MG~gIA~~la~a-G~~V~l~D~~~e 41 (507)
T PRK08268 9 TVAVIGAGAMGAGIAQVAAQA-GHTVLLYDARAG 41 (507)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 478999999999999999996 999999987654
No 415
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=86.13 E-value=1.3 Score=36.89 Aligned_cols=35 Identities=23% Similarity=0.216 Sum_probs=30.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.-.++|+|.|+.|..+|..+... |.+|+++|..+.
T Consensus 202 GktVvViG~G~IG~~va~~ak~~-Ga~ViV~d~d~~ 236 (413)
T cd00401 202 GKVAVVAGYGDVGKGCAQSLRGQ-GARVIVTEVDPI 236 (413)
T ss_pred CCEEEEECCCHHHHHHHHHHHHC-CCEEEEEECChh
Confidence 34789999999999999999886 889999988654
No 416
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=86.07 E-value=1 Score=39.20 Aligned_cols=35 Identities=31% Similarity=0.398 Sum_probs=31.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+-++||+|.|..|-.+|..|.++ ++++++||..++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~ 434 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMAN-KMRITVLERDIS 434 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhC-CCCEEEEECCHH
Confidence 46899999999999999999996 999999998765
No 417
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=86.01 E-value=2.4 Score=32.31 Aligned_cols=34 Identities=24% Similarity=0.510 Sum_probs=29.2
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCC---cEEEEecCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDW---RVLLIEAGG 63 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~---~VlvLE~G~ 63 (146)
.-.++|+|+|-+|..+|..|.+. |. ++.++++-+
T Consensus 25 ~~rvlvlGAGgAg~aiA~~L~~~-G~~~~~i~ivdr~g 61 (226)
T cd05311 25 EVKIVINGAGAAGIAIARLLLAA-GAKPENIVVVDSKG 61 (226)
T ss_pred CCEEEEECchHHHHHHHHHHHHc-CcCcceEEEEeCCC
Confidence 34799999999999999999986 65 599999974
No 418
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=85.97 E-value=1.3 Score=38.79 Aligned_cols=35 Identities=20% Similarity=0.321 Sum_probs=32.0
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
+-++||+|.|..|-..|..|.++ +.++++||+.++
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~-g~~vvvID~d~~ 434 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSS-GVKMTVLDHDPD 434 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhC-CCCEEEEECCHH
Confidence 46899999999999999999996 999999999865
No 419
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=85.91 E-value=0.95 Score=37.40 Aligned_cols=36 Identities=25% Similarity=0.279 Sum_probs=30.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
.-|+.|||+|-+|.-+|..|+-- -..|.+||=.+..
T Consensus 354 gK~VAVIGGGNSGvEAAIDLAGi-v~hVtllEF~~eL 389 (520)
T COG3634 354 GKRVAVIGGGNSGVEAAIDLAGI-VEHVTLLEFAPEL 389 (520)
T ss_pred CceEEEECCCcchHHHHHhHHhh-hheeeeeecchhh
Confidence 34999999999999999999874 5688999987653
No 420
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.91 E-value=1.3 Score=36.73 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.++|+|+|..|..+|..|++. |.+|.+.|+..
T Consensus 7 ~v~v~G~g~~G~s~a~~l~~~-G~~V~~~d~~~ 38 (447)
T PRK02472 7 KVLVLGLAKSGYAAAKLLHKL-GANVTVNDGKP 38 (447)
T ss_pred EEEEEeeCHHHHHHHHHHHHC-CCEEEEEcCCC
Confidence 479999999999999999996 99999998764
No 421
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=85.84 E-value=1.7 Score=31.13 Aligned_cols=32 Identities=19% Similarity=0.404 Sum_probs=26.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+-+||-|..|..+|.+|.++ |++|.+.++-+
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~-g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKA-GYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHT-TTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhc-CCeEEeeccch
Confidence 467999999999999999996 99999999774
No 422
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=85.62 E-value=1.3 Score=37.54 Aligned_cols=32 Identities=22% Similarity=0.287 Sum_probs=28.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+-|||+|..|...|..|+++ |++|.+.++.+
T Consensus 6 kIavIG~G~MG~~iA~~la~~-G~~V~v~D~~~ 37 (495)
T PRK07531 6 KAACIGGGVIGGGWAARFLLA-GIDVAVFDPHP 37 (495)
T ss_pred EEEEECcCHHHHHHHHHHHhC-CCeEEEEeCCH
Confidence 478999999999999999996 99999998754
No 423
>KOG3923|consensus
Probab=85.62 E-value=1.3 Score=35.62 Aligned_cols=38 Identities=18% Similarity=0.091 Sum_probs=29.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHH------hCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSE------ELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~------~~g~~VlvLE~G~~~ 65 (146)
...++.|||+|.-|++.|..+.+ .|..+|.+++-...+
T Consensus 2 ~~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~Drf~e 45 (342)
T KOG3923|consen 2 KTPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISDRFTE 45 (342)
T ss_pred CCccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecCCCcc
Confidence 45689999999999999966655 245688888776554
No 424
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=85.47 E-value=1.3 Score=39.51 Aligned_cols=35 Identities=11% Similarity=0.206 Sum_probs=30.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
--.+.|||+|..|.-.|..++.+ |+.|.++|....
T Consensus 313 i~~v~ViGaG~mG~gIA~~~a~~-G~~V~l~d~~~~ 347 (714)
T TIGR02437 313 VKQAAVLGAGIMGGGIAYQSASK-GTPIVMKDINQH 347 (714)
T ss_pred cceEEEECCchHHHHHHHHHHhC-CCeEEEEeCCHH
Confidence 34688999999999999999996 999999997643
No 425
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=85.39 E-value=1.9 Score=31.46 Aligned_cols=36 Identities=19% Similarity=0.217 Sum_probs=30.5
Q ss_pred CCcccEEEECCCH-HHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 27 SGKFDFIIVGGGS-AGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 27 ~~~~D~iIIG~G~-aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.....++|||+|- .|..+|..|.++ |.+|.++.+-.
T Consensus 42 l~gk~vlViG~G~~~G~~~a~~L~~~-g~~V~v~~r~~ 78 (168)
T cd01080 42 LAGKKVVVVGRSNIVGKPLAALLLNR-NATVTVCHSKT 78 (168)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHhhC-CCEEEEEECCc
Confidence 4567999999996 699899999996 88899998863
No 426
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=85.17 E-value=1.8 Score=34.31 Aligned_cols=33 Identities=24% Similarity=0.512 Sum_probs=28.2
Q ss_pred cEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~~ 64 (146)
.+.|||+|..|..+|..|+.. + ..+.++++...
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~-g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQ-GIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhc-CCCCEEEEEeCCcc
Confidence 478999999999999999986 6 57999998544
No 427
>KOG2495|consensus
Probab=85.00 E-value=0.48 Score=39.79 Aligned_cols=37 Identities=38% Similarity=0.621 Sum_probs=30.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHh-------------CCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEE-------------LDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~-------------~g~~VlvLE~G~~~ 65 (146)
-..++|||+||.|.-+|.+|+.- ...+|.++|+.+..
T Consensus 218 lLh~VVVGGGPTGVEFAaEL~Dfi~~Dl~k~yp~l~~~i~vtLiEA~d~i 267 (491)
T KOG2495|consen 218 LLHFVVVGGGPTGVEFAAELADFIPEDLRKIYPELKKDIKVTLIEAADHI 267 (491)
T ss_pred eEEEEEECCCCcceeehHHHHHHHHHHHHHhhhcchhheEEEeeccchhH
Confidence 46999999999999999999851 24489999999853
No 428
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=84.98 E-value=1.6 Score=34.47 Aligned_cols=35 Identities=20% Similarity=0.293 Sum_probs=30.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
...+.|+|.|..|..+|..|... |.+|.+.++...
T Consensus 151 gk~v~IiG~G~iG~avA~~L~~~-G~~V~v~~R~~~ 185 (287)
T TIGR02853 151 GSNVMVLGFGRTGMTIARTFSAL-GARVFVGARSSA 185 (287)
T ss_pred CCEEEEEcChHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 45799999999999999999986 899999998643
No 429
>KOG2304|consensus
Probab=84.93 E-value=1.3 Score=34.53 Aligned_cols=38 Identities=26% Similarity=0.411 Sum_probs=32.7
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
......|-|||+|..|+-.|+..+.. |+.|.|+++..+
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~s-g~~V~l~d~~~~ 45 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATS-GLNVWLVDANED 45 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhc-CCceEEecCCHH
Confidence 34456899999999999999999885 999999998765
No 430
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=84.62 E-value=2 Score=33.10 Aligned_cols=33 Identities=24% Similarity=0.332 Sum_probs=29.5
Q ss_pred EEEEC-CCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 32 FIIVG-GGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 32 ~iIIG-~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
++|.| +|+-|..++.+|.++ |++|..+.+....
T Consensus 3 ILVtG~tGfiG~~l~~~L~~~-g~~V~~~~r~~~~ 36 (314)
T COG0451 3 ILVTGGAGFIGSHLVERLLAA-GHDVRGLDRLRDG 36 (314)
T ss_pred EEEEcCcccHHHHHHHHHHhC-CCeEEEEeCCCcc
Confidence 88999 499999999999997 9999999987553
No 431
>PRK08017 oxidoreductase; Provisional
Probab=84.37 E-value=2 Score=32.25 Aligned_cols=32 Identities=25% Similarity=0.283 Sum_probs=28.0
Q ss_pred cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.++|.|+ |.-|..+|.+|.++ |.+|+++.+..
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~-g~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRR-GYRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 4899998 99999999999996 89999987753
No 432
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.27 E-value=2.2 Score=29.61 Aligned_cols=33 Identities=24% Similarity=0.378 Sum_probs=28.3
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~ 64 (146)
.++|||.|--|+.+|..|++. |. ++.+++....
T Consensus 1 ~VliiG~GglGs~ia~~L~~~-Gv~~i~ivD~d~v 34 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARS-GVGKITLIDFDTV 34 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHC-CCCEEEEEcCCCc
Confidence 378999999999999999996 65 7899987754
No 433
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=84.19 E-value=1.6 Score=33.18 Aligned_cols=30 Identities=30% Similarity=0.514 Sum_probs=26.9
Q ss_pred EEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
+.|+|.|--|..+|.+|+++ |+.|.+--+.
T Consensus 4 ~~i~GtGniG~alA~~~a~a-g~eV~igs~r 33 (211)
T COG2085 4 IAIIGTGNIGSALALRLAKA-GHEVIIGSSR 33 (211)
T ss_pred EEEeccChHHHHHHHHHHhC-CCeEEEecCC
Confidence 68999999999999999996 9999998444
No 434
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=84.16 E-value=2 Score=31.47 Aligned_cols=33 Identities=30% Similarity=0.446 Sum_probs=28.6
Q ss_pred cccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 29 KFDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 29 ~~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
.-.++|+|+ |..|..+|..|++. +.+|.++.|.
T Consensus 28 ~~~vlVlGgtG~iG~~~a~~l~~~-g~~V~l~~R~ 61 (194)
T cd01078 28 GKTAVVLGGTGPVGQRAAVLLARE-GARVVLVGRD 61 (194)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 457999996 99999999999986 8899998765
No 435
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=84.07 E-value=1.9 Score=34.04 Aligned_cols=32 Identities=31% Similarity=0.522 Sum_probs=27.4
Q ss_pred EEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408 32 FIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD 64 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~ 64 (146)
+.|||+|..|..+|..|+.+ +. .|.++|....
T Consensus 1 I~IIGaG~vG~~ia~~la~~-~l~eV~L~Di~e~ 33 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALK-ELGDVVLLDIVEG 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhC-CCcEEEEEeCCCc
Confidence 46999999999999999985 65 9999998644
No 436
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=83.62 E-value=1.7 Score=33.98 Aligned_cols=31 Identities=16% Similarity=0.329 Sum_probs=28.2
Q ss_pred EEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
+-|||.|..|..+|..|++. |++|.+.++.+
T Consensus 2 IgvIG~G~mG~~iA~~l~~~-G~~V~~~dr~~ 32 (291)
T TIGR01505 2 VGFIGLGIMGSPMSINLAKA-GYQLHVTTIGP 32 (291)
T ss_pred EEEEEecHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence 67999999999999999996 99999998864
No 437
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=83.56 E-value=2.8 Score=26.77 Aligned_cols=32 Identities=25% Similarity=0.480 Sum_probs=27.1
Q ss_pred EEEECCCHHHHHHHHHHHHhCC---CcEEEE-ecCCC
Q psy3408 32 FIIVGGGSAGAVLANRLSEELD---WRVLLI-EAGGD 64 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~~g---~~VlvL-E~G~~ 64 (146)
+.|||+|-.|..++..|.+. + .+|.++ ++.++
T Consensus 2 I~iIG~G~mg~al~~~l~~~-g~~~~~v~~~~~r~~~ 37 (96)
T PF03807_consen 2 IGIIGAGNMGSALARGLLAS-GIKPHEVIIVSSRSPE 37 (96)
T ss_dssp EEEESTSHHHHHHHHHHHHT-TS-GGEEEEEEESSHH
T ss_pred EEEECCCHHHHHHHHHHHHC-CCCceeEEeeccCcHH
Confidence 56899999999999999996 7 888866 77654
No 438
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=83.50 E-value=1.8 Score=31.54 Aligned_cols=37 Identities=22% Similarity=0.205 Sum_probs=28.1
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
..--.++|+|-|..|..+|.+|+.. |.+|.|.|..+.
T Consensus 21 l~Gk~vvV~GYG~vG~g~A~~lr~~-Ga~V~V~e~DPi 57 (162)
T PF00670_consen 21 LAGKRVVVIGYGKVGKGIARALRGL-GARVTVTEIDPI 57 (162)
T ss_dssp -TTSEEEEE--SHHHHHHHHHHHHT-T-EEEEE-SSHH
T ss_pred eCCCEEEEeCCCcccHHHHHHHhhC-CCEEEEEECChH
Confidence 3345799999999999999999996 999999998764
No 439
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=83.38 E-value=2.7 Score=29.94 Aligned_cols=32 Identities=22% Similarity=0.373 Sum_probs=28.5
Q ss_pred EEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 32 FIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 32 ~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
++|+|+ |..|..++.+|.++ +++|.++=|.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~-~~~V~~~~R~~~ 33 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRR-GHEVTALVRSPS 33 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHT-TSEEEEEESSGG
T ss_pred eEEECCCChHHHHHHHHHHHC-CCEEEEEecCch
Confidence 689996 99999999999997 899999988755
No 440
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=83.19 E-value=2.4 Score=33.45 Aligned_cols=36 Identities=31% Similarity=0.326 Sum_probs=31.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
..-++|||.|.-|...|..|.++ |+.|-++.+....
T Consensus 3 ~~~v~IvG~GliG~s~a~~l~~~-g~~v~i~g~d~~~ 38 (279)
T COG0287 3 SMKVGIVGLGLMGGSLARALKEA-GLVVRIIGRDRSA 38 (279)
T ss_pred CcEEEEECCchHHHHHHHHHHHc-CCeEEEEeecCcH
Confidence 34689999999999999999996 9999999887653
No 441
>PRK06223 malate dehydrogenase; Reviewed
Probab=83.13 E-value=2.3 Score=33.53 Aligned_cols=32 Identities=31% Similarity=0.512 Sum_probs=27.7
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~ 63 (146)
.+.|||+|..|..+|..++.. +. .|.++|.-.
T Consensus 4 KI~VIGaG~vG~~ia~~la~~-~~~ev~L~D~~~ 36 (307)
T PRK06223 4 KISIIGAGNVGATLAHLLALK-ELGDVVLFDIVE 36 (307)
T ss_pred EEEEECCCHHHHHHHHHHHhC-CCeEEEEEECCC
Confidence 689999999999999999985 54 899999743
No 442
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=83.06 E-value=1.8 Score=38.78 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=30.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
-.+-|||+|..|.-.|..++.+ |+.|.++|..+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~-G~~V~l~d~~~~ 369 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDK-GLKTVLKDATPA 369 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhC-CCcEEEecCCHH
Confidence 4688999999999999999996 999999997654
No 443
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=82.66 E-value=2.4 Score=34.47 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=27.2
Q ss_pred cEEEECCCHHHHHHHHHHHHhCC--------CcEEEEec
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELD--------WRVLLIEA 61 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g--------~~VlvLE~ 61 (146)
.+.|||+|.-|..+|..|+++ + ++|.+..+
T Consensus 1 kI~VIGaG~wGtALA~~la~n-g~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAEN-ARALPELFEESVRMWVF 38 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHc-CCcccccCCceEEEEEe
Confidence 367999999999999999996 7 99999987
No 444
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=82.66 E-value=3.1 Score=30.31 Aligned_cols=31 Identities=23% Similarity=0.285 Sum_probs=27.8
Q ss_pred EEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408 32 FIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG 63 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~ 63 (146)
++|||.|-.|+.+|..|++. |. ++.++|...
T Consensus 2 VlViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 33 (174)
T cd01487 2 VGIAGAGGLGSNIAVLLARS-GVGNLKLVDFDV 33 (174)
T ss_pred EEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 78999999999999999996 66 599999875
No 445
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=82.51 E-value=2.5 Score=33.49 Aligned_cols=35 Identities=20% Similarity=0.209 Sum_probs=31.1
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
....++|||.|..|..++..|.+. |.+|.+.++-.
T Consensus 151 ~g~kvlViG~G~iG~~~a~~L~~~-Ga~V~v~~r~~ 185 (296)
T PRK08306 151 HGSNVLVLGFGRTGMTLARTLKAL-GANVTVGARKS 185 (296)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 356899999999999999999986 89999998874
No 446
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=82.44 E-value=2.2 Score=36.21 Aligned_cols=34 Identities=15% Similarity=0.274 Sum_probs=28.6
Q ss_pred cEEEECCCHHHHHHHHHHHHhC-CCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~-g~~VlvLE~G~~ 64 (146)
.+.|||.|..|+.+|..|+++. +++|+.+|....
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~~ 37 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISVP 37 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCHH
Confidence 4889999999999999999852 578999987654
No 447
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=82.44 E-value=2.4 Score=33.36 Aligned_cols=33 Identities=24% Similarity=0.366 Sum_probs=28.5
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~ 63 (146)
-.++|||+|-+|..+|..|++. |. ++.|++|-.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~-G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTL-GVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHc-CCCEEEEECCCH
Confidence 4799999999999999999986 64 799998753
No 448
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=82.19 E-value=2.5 Score=37.15 Aligned_cols=35 Identities=14% Similarity=0.127 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
-.++|||+|..|.-+|..+.+....+|.|+++.+.
T Consensus 324 k~VvVIGgG~~a~e~A~~l~~~Ga~~Vtlv~r~~~ 358 (652)
T PRK12814 324 KKVVVIGGGNTAIDAARTALRLGAESVTILYRRTR 358 (652)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 37899999999999999988862346999998754
No 449
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=82.11 E-value=3 Score=33.49 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=28.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~ 64 (146)
..+.|||+|..|..+|..++.. +. ++.|+|.-+.
T Consensus 7 ~KI~IIGaG~vG~~ia~~la~~-gl~~i~LvDi~~~ 41 (321)
T PTZ00082 7 RKISLIGSGNIGGVMAYLIVLK-NLGDVVLFDIVKN 41 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhC-CCCeEEEEeCCCc
Confidence 4689999999999999999885 74 8999997554
No 450
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=82.02 E-value=2.3 Score=33.52 Aligned_cols=32 Identities=16% Similarity=0.364 Sum_probs=28.8
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
++-|||.|..|..+|..|+++ |++|.+.++.+
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~-G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQ-GHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence 578999999999999999996 99999998764
No 451
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=82.01 E-value=2.6 Score=32.70 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=28.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
-.++|+|+|-.|..+|..|++. |.+|.++.|..
T Consensus 118 k~vliiGaGg~g~aia~~L~~~-g~~v~v~~R~~ 150 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKA-DCNVIIANRTV 150 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 3689999999999999999996 88999998753
No 452
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=82.00 E-value=1.1 Score=31.31 Aligned_cols=36 Identities=22% Similarity=0.390 Sum_probs=27.7
Q ss_pred cCCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 26 ~~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
...+..+-|||+|..|..++..|.++ |+.|.-+...
T Consensus 7 ~~~~l~I~iIGaGrVG~~La~aL~~a-g~~v~~v~sr 42 (127)
T PF10727_consen 7 QAARLKIGIIGAGRVGTALARALARA-GHEVVGVYSR 42 (127)
T ss_dssp -----EEEEECTSCCCCHHHHHHHHT-TSEEEEESSC
T ss_pred CCCccEEEEECCCHHHHHHHHHHHHC-CCeEEEEEeC
Confidence 44578999999999999999999996 9988777554
No 453
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=81.84 E-value=2.6 Score=35.10 Aligned_cols=35 Identities=23% Similarity=0.210 Sum_probs=30.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.-.++|+|.|..|..+|..+... |.+|+++|..+.
T Consensus 195 Gk~VvViG~G~IG~~vA~~ak~~-Ga~ViV~d~dp~ 229 (406)
T TIGR00936 195 GKTVVVAGYGWCGKGIAMRARGM-GARVIVTEVDPI 229 (406)
T ss_pred cCEEEEECCCHHHHHHHHHHhhC-cCEEEEEeCChh
Confidence 44799999999999999999986 899999987653
No 454
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=81.73 E-value=2.5 Score=33.60 Aligned_cols=37 Identities=14% Similarity=0.234 Sum_probs=30.4
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
..-.++|||+|..|..++..|.+....+|.++++...
T Consensus 177 ~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~ 213 (311)
T cd05213 177 KGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYE 213 (311)
T ss_pred cCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH
Confidence 3557999999999999999998853578999988643
No 455
>KOG1336|consensus
Probab=81.73 E-value=2.5 Score=35.88 Aligned_cols=37 Identities=22% Similarity=0.136 Sum_probs=32.9
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
.-.++++|+|..|.-+|..|... +++|.+++..+..-
T Consensus 213 ~~~vV~vG~G~ig~Evaa~l~~~-~~~VT~V~~e~~~~ 249 (478)
T KOG1336|consen 213 GGKVVCVGGGFIGMEVAAALVSK-AKSVTVVFPEPWLL 249 (478)
T ss_pred CceEEEECchHHHHHHHHHHHhc-CceEEEEccCccch
Confidence 44699999999999999999996 99999999987653
No 456
>PRK07774 short chain dehydrogenase; Provisional
Probab=81.71 E-value=3 Score=31.14 Aligned_cols=33 Identities=24% Similarity=0.360 Sum_probs=28.7
Q ss_pred ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
..++|.|+ |.-|..+|..|.++ |.+|+++.+..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~-g~~vi~~~r~~ 40 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE-GASVVVADINA 40 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 35899997 88999999999996 99999998753
No 457
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=81.69 E-value=2.1 Score=35.04 Aligned_cols=33 Identities=27% Similarity=0.487 Sum_probs=29.3
Q ss_pred ccEEEEC-CCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVG-GGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG-~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
-.+.||| .|..|..+|..|.++ |+.|.+.++.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~-G~~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLS-GYQVRILEQDD 132 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHC-CCeEEEeCCCc
Confidence 4688999 899999999999996 99999999753
No 458
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=81.61 E-value=3.5 Score=30.72 Aligned_cols=35 Identities=17% Similarity=0.313 Sum_probs=30.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~ 63 (146)
....++|||.|--|+.+|..|++. |. ++.++|...
T Consensus 20 ~~~~VlviG~GglGs~ia~~La~~-Gv~~i~lvD~d~ 55 (202)
T TIGR02356 20 LNSHVLIIGAGGLGSPAALYLAGA-GVGTIVIVDDDH 55 (202)
T ss_pred cCCCEEEECCCHHHHHHHHHHHHc-CCCeEEEecCCE
Confidence 467899999999999999999997 64 899998874
No 459
>PRK07326 short chain dehydrogenase; Provisional
Probab=81.58 E-value=2.7 Score=31.08 Aligned_cols=33 Identities=24% Similarity=0.357 Sum_probs=27.6
Q ss_pred ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
--++|+|+ |.-|..+|.+|.++ |.+|+++.+.+
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~-g~~V~~~~r~~ 40 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE-GYKVAITARDQ 40 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC-CCEEEEeeCCH
Confidence 45788885 88999999999996 99999998754
No 460
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=81.54 E-value=2.9 Score=35.32 Aligned_cols=36 Identities=22% Similarity=0.254 Sum_probs=29.0
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
-.++|||+|..|.-+|..+.+....+|.++|..+..
T Consensus 284 k~VvViGgG~~g~d~a~~a~~~ga~~V~vv~~~~~~ 319 (485)
T TIGR01317 284 KKVVVIGGGDTGADCVGTSLRHGAASVHQFEIMPKP 319 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEEEecCCC
Confidence 479999999999998877766545689999987653
No 461
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=81.45 E-value=2.8 Score=33.44 Aligned_cols=34 Identities=35% Similarity=0.452 Sum_probs=27.4
Q ss_pred EEEECCCHHHHHHHHHHHH-hCCCcEEEEecCCCC
Q psy3408 32 FIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDP 65 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~-~~g~~VlvLE~G~~~ 65 (146)
++|||+|.+|..+|..|.+ .++..+.++++....
T Consensus 1 ivivG~g~aG~~aa~~l~~~~~~~~i~i~~~~~~~ 35 (415)
T COG0446 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKY 35 (415)
T ss_pred CEEECCcHHHHHHHHHHHhcCCCCCEEEEeCCCCC
Confidence 5899999999999998887 346788877777554
No 462
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=81.43 E-value=2.7 Score=35.24 Aligned_cols=35 Identities=26% Similarity=0.243 Sum_probs=30.6
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.-.++|+|.|..|..+|..|... |.+|++.|..+.
T Consensus 212 Gk~VlViG~G~IG~~vA~~lr~~-Ga~ViV~d~dp~ 246 (425)
T PRK05476 212 GKVVVVAGYGDVGKGCAQRLRGL-GARVIVTEVDPI 246 (425)
T ss_pred CCEEEEECCCHHHHHHHHHHHhC-CCEEEEEcCCch
Confidence 44799999999999999999986 889999987653
No 463
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=81.16 E-value=5.5 Score=35.48 Aligned_cols=35 Identities=17% Similarity=0.213 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
-.+.|||+|..|.-.|..++...|+.|.++|..+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~ 344 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQ 344 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHH
Confidence 46889999999999999999324999999998643
No 464
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=80.91 E-value=4.7 Score=33.79 Aligned_cols=50 Identities=16% Similarity=0.305 Sum_probs=36.8
Q ss_pred hhhhccccc--cccCCcccEEEECCCHHHHHHHHHHHHhCCC---cEEEEecCCCC
Q psy3408 15 VFTVVSTAE--DNISGKFDFIIVGGGSAGAVLANRLSEELDW---RVLLIEAGGDP 65 (146)
Q Consensus 15 ~~~~~~~~~--~~~~~~~D~iIIG~G~aG~~~A~~L~~~~g~---~VlvLE~G~~~ 65 (146)
++++.++.. ........+++.|+|.+|+.+|..|... |. ++.++|+-+..
T Consensus 183 lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~-g~~~~~i~~~D~~G~l 237 (432)
T COG0281 183 LAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAA-GVKEENIFVVDRKGLL 237 (432)
T ss_pred HHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHh-CCCcccEEEEecCCcc
Confidence 444555542 3334567899999999999999999985 54 79999997543
No 465
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=80.83 E-value=2.7 Score=38.66 Aligned_cols=34 Identities=15% Similarity=0.219 Sum_probs=29.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
-+++|||+|..|.=+|..+.+. |.+|.++.+.+.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~-Ga~Vtlv~rr~~ 481 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRL-GGNVTIVYRRTK 481 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHc-CCEEEEEEecCc
Confidence 4799999999999999999886 889999998753
No 466
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=80.77 E-value=2.2 Score=34.69 Aligned_cols=33 Identities=18% Similarity=0.455 Sum_probs=26.1
Q ss_pred EEEECCCHHHHHHHHHHHHhCCC-cEEEEecCCC
Q psy3408 32 FIIVGGGSAGAVLANRLSEELDW-RVLLIEAGGD 64 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~~ 64 (146)
++|+|+|..|..++..|++.... +|+|.++...
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~ 34 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPE 34 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHH
Confidence 68999999999999999997445 8899888654
No 467
>PLN02572 UDP-sulfoquinovose synthase
Probab=80.72 E-value=3.5 Score=34.47 Aligned_cols=31 Identities=26% Similarity=0.529 Sum_probs=27.2
Q ss_pred ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEec
Q psy3408 30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEA 61 (146)
Q Consensus 30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~ 61 (146)
-.++|.|+ |+-|..++.+|.++ |++|.++++
T Consensus 48 k~VLVTGatGfIGs~Lv~~L~~~-G~~V~~~d~ 79 (442)
T PLN02572 48 KKVMVIGGDGYCGWATALHLSKR-GYEVAIVDN 79 (442)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC-CCeEEEEec
Confidence 36899996 99999999999996 999999864
No 468
>PRK06057 short chain dehydrogenase; Provisional
Probab=80.72 E-value=3.3 Score=31.22 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=28.8
Q ss_pred ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
-.++|+|+ |.-|..+|.+|+++ |.+|.++.+...
T Consensus 8 ~~vlItGasggIG~~~a~~l~~~-G~~v~~~~r~~~ 42 (255)
T PRK06057 8 RVAVITGGGSGIGLATARRLAAE-GATVVVGDIDPE 42 (255)
T ss_pred CEEEEECCCchHHHHHHHHHHHc-CCEEEEEeCCHH
Confidence 46899998 78899999999996 999999987543
No 469
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=80.69 E-value=1.4 Score=35.56 Aligned_cols=23 Identities=30% Similarity=0.167 Sum_probs=20.0
Q ss_pred HHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 43 VLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 43 ~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
++|++|+++ |++|+|||+.+..+
T Consensus 1 ~AA~~L~~~-G~~v~vlEa~~~~G 23 (419)
T TIGR03467 1 SAAVELARA-GARVTLFEARPRLG 23 (419)
T ss_pred ChHHHHHhC-CCceEEEecCCCCC
Confidence 378999996 99999999998764
No 470
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=80.61 E-value=6.7 Score=34.93 Aligned_cols=35 Identities=20% Similarity=0.231 Sum_probs=29.6
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
-.+.|||+|..|.-.|..++...|+.|.++|..+.
T Consensus 305 ~~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~~ 339 (699)
T TIGR02440 305 KKVGILGGGLMGGGIASVTATKAGIPVRIKDINPQ 339 (699)
T ss_pred cEEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCHH
Confidence 46889999999999999998424999999998753
No 471
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=80.54 E-value=3.4 Score=33.04 Aligned_cols=35 Identities=26% Similarity=0.370 Sum_probs=31.9
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~~ 66 (146)
|++|||+|-+..--|..|++- ..+|.++-|++...
T Consensus 145 ~v~ViGgG~sAve~Al~L~~~-a~~Vtlv~r~~~~r 179 (305)
T COG0492 145 DVVVIGGGDSAVEEALYLSKI-AKKVTLVHRRDEFR 179 (305)
T ss_pred eEEEEcCCHHHHHHHHHHHHh-cCeEEEEecCcccC
Confidence 999999999999999999995 88899999987753
No 472
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=80.50 E-value=3.7 Score=28.53 Aligned_cols=35 Identities=20% Similarity=0.282 Sum_probs=28.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.-.++|||.|..|...|..|.+....+|.+.++..
T Consensus 19 ~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 19 GKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 34689999999999999999985237899988754
No 473
>PRK10537 voltage-gated potassium channel; Provisional
Probab=80.45 E-value=3.1 Score=34.48 Aligned_cols=33 Identities=24% Similarity=0.138 Sum_probs=29.5
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
+-++||+|.|.-|..++.+|.++ +.+|+++|..
T Consensus 240 k~HvII~G~g~lg~~v~~~L~~~-g~~vvVId~d 272 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLGLRQR-GQAVTVIVPL 272 (393)
T ss_pred CCeEEEECCChHHHHHHHHHHHC-CCCEEEEECc
Confidence 45799999999999999999986 8999999964
No 474
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=80.32 E-value=3.5 Score=31.74 Aligned_cols=37 Identities=16% Similarity=0.155 Sum_probs=30.6
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
....++|||.|--|+.+|..|+..+-.++.|+|....
T Consensus 31 ~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~v 67 (245)
T PRK05690 31 KAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTV 67 (245)
T ss_pred cCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 4679999999999999999999973347888877643
No 475
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.27 E-value=3 Score=34.93 Aligned_cols=32 Identities=19% Similarity=0.187 Sum_probs=29.1
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+.|+|.|.+|..+|..|.+. |.+|.+.|+.+
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~-G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKL-GAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHC-CCEEEEECCCC
Confidence 689999999999999999986 99999999865
No 476
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=80.17 E-value=2.7 Score=33.80 Aligned_cols=33 Identities=21% Similarity=0.406 Sum_probs=29.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+-|||+|..|.-.|..++. .|+.|.+.|....
T Consensus 5 kv~ViGaG~MG~gIA~~~A~-~G~~V~l~D~~~~ 37 (307)
T COG1250 5 KVAVIGAGVMGAGIAAVFAL-AGYDVVLKDISPE 37 (307)
T ss_pred EEEEEcccchhHHHHHHHhh-cCCceEEEeCCHH
Confidence 57799999999999999999 5999999998743
No 477
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=80.13 E-value=3.6 Score=34.17 Aligned_cols=33 Identities=18% Similarity=0.259 Sum_probs=29.4
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.++|+|.|..|..+|..|+++ |.+|.+.|....
T Consensus 7 ~~~v~G~g~~G~~~a~~l~~~-g~~v~~~d~~~~ 39 (445)
T PRK04308 7 KILVAGLGGTGISMIAYLRKN-GAEVAAYDAELK 39 (445)
T ss_pred EEEEECCCHHHHHHHHHHHHC-CCEEEEEeCCCC
Confidence 589999999999999999996 999999997654
No 478
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=80.07 E-value=3.4 Score=32.30 Aligned_cols=35 Identities=14% Similarity=0.226 Sum_probs=29.8
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~ 64 (146)
.-.++|+|+|-+|..++..|.+. | .+|.|+.|-..
T Consensus 123 ~k~vlVlGaGg~a~ai~~aL~~~-g~~~V~v~~R~~~ 158 (278)
T PRK00258 123 GKRILILGAGGAARAVILPLLDL-GVAEITIVNRTVE 158 (278)
T ss_pred CCEEEEEcCcHHHHHHHHHHHHc-CCCEEEEEeCCHH
Confidence 34789999999999999999986 7 78999988643
No 479
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=80.06 E-value=3.5 Score=32.51 Aligned_cols=33 Identities=9% Similarity=0.282 Sum_probs=27.8
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCc-EEEEecCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~-VlvLE~G~ 63 (146)
-.++|+|+|=+|..+|..|++. |.+ |.|+.|..
T Consensus 127 k~vlI~GAGGagrAia~~La~~-G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALD-GAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHC-CCCEEEEEeCCc
Confidence 4689999999999999999986 765 99998754
No 480
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=79.95 E-value=4.2 Score=31.29 Aligned_cols=38 Identities=18% Similarity=0.160 Sum_probs=31.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~~ 65 (146)
....++|||.|--|+.+|..|++.+-.++.++|.....
T Consensus 23 ~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve 60 (240)
T TIGR02355 23 KASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVS 60 (240)
T ss_pred hCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCccc
Confidence 35689999999999999999999744577888876543
No 481
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=79.95 E-value=4.1 Score=30.71 Aligned_cols=35 Identities=23% Similarity=0.271 Sum_probs=30.3
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCC-cEEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~-~VlvLE~G~ 63 (146)
....++|||.|-.|+.+|..|++. |. ++.++|...
T Consensus 27 ~~~~V~ViG~GglGs~ia~~La~~-Gvg~i~lvD~D~ 62 (212)
T PRK08644 27 KKAKVGIAGAGGLGSNIAVALARS-GVGNLKLVDFDV 62 (212)
T ss_pred hCCCEEEECcCHHHHHHHHHHHHc-CCCeEEEEeCCE
Confidence 467899999999999999999997 55 588888874
No 482
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=79.94 E-value=3.2 Score=32.74 Aligned_cols=32 Identities=19% Similarity=0.317 Sum_probs=28.4
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+-|||.|..|..+|.+|.++ |++|.+.++-.
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~-g~~V~~~dr~~ 33 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKR-GHDCVGYDHDQ 33 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHC-CCEEEEEECCH
Confidence 477999999999999999996 99999988754
No 483
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=79.88 E-value=3.7 Score=31.07 Aligned_cols=36 Identities=19% Similarity=0.241 Sum_probs=29.7
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
....++|||.|--|+.+|..|++.+-.++.|+|...
T Consensus 20 ~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ 55 (228)
T cd00757 20 KNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDV 55 (228)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCE
Confidence 467899999999999999999997444777877654
No 484
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=79.82 E-value=3.2 Score=34.24 Aligned_cols=32 Identities=16% Similarity=0.226 Sum_probs=27.2
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+-|||.|..|+.+|..++. |++|+++|....
T Consensus 2 kI~VIGlGyvGl~~A~~lA~--G~~VigvD~d~~ 33 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ--NHEVVALDILPS 33 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh--CCcEEEEECCHH
Confidence 36799999999999977764 899999998654
No 485
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=79.81 E-value=3.1 Score=32.47 Aligned_cols=32 Identities=13% Similarity=0.299 Sum_probs=28.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+-|||.|..|...|..|++. |++|++.++.+
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~-g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKA-GYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHC-CCeEEEEcCCH
Confidence 588999999999999999995 99999998753
No 486
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=79.79 E-value=3.2 Score=38.53 Aligned_cols=35 Identities=17% Similarity=0.187 Sum_probs=28.9
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~ 64 (146)
-.++|||+|..|.=+|..+.+.++ .+|.++.+.+.
T Consensus 669 KrVVVIGGGnVAmD~Ar~a~RlgGakeVTLVyRr~~ 704 (1019)
T PRK09853 669 KHVVVVGGGNTAMDAARAALRVPGVEKVTVVYRRTK 704 (1019)
T ss_pred CEEEEECCChHHHHHHHHHHhcCCCceEEEEEccCc
Confidence 379999999999999988777535 58999998753
No 487
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=79.58 E-value=3.8 Score=30.42 Aligned_cols=33 Identities=24% Similarity=0.409 Sum_probs=28.3
Q ss_pred ccEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 30 FDFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 30 ~D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
-.++|+|+ |.-|..+|.+|.++ |.+|+++.+..
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~-G~~vi~~~r~~ 39 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQK-GAKLALIDLNQ 39 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHC-CCEEEEEeCCH
Confidence 35889997 99999999999996 89999988753
No 488
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=79.57 E-value=3 Score=32.89 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=27.5
Q ss_pred cEEEECCCHHHHHHHHHHHHhCC--CcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELD--WRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g--~~VlvLE~G~ 63 (146)
.+.|||.|..|...|..|.+. | .+|.++++..
T Consensus 8 ~I~IIG~G~mG~sla~~l~~~-g~~~~V~~~dr~~ 41 (307)
T PRK07502 8 RVALIGIGLIGSSLARAIRRL-GLAGEIVGADRSA 41 (307)
T ss_pred EEEEEeeCHHHHHHHHHHHhc-CCCcEEEEEECCH
Confidence 589999999999999999985 6 4888888754
No 489
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=79.42 E-value=3.4 Score=31.65 Aligned_cols=30 Identities=30% Similarity=0.500 Sum_probs=27.0
Q ss_pred EEEECC-CHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 32 FIIVGG-GSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 32 ~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
++|+|+ |.-|..++.+|.++ |++|.++.+.
T Consensus 2 ilv~G~tG~iG~~l~~~l~~~-g~~v~~~~r~ 32 (287)
T TIGR01214 2 ILITGANGQLGRELVQQLSPE-GRVVVALTSS 32 (287)
T ss_pred EEEEcCCCHHHHHHHHHHHhc-CCEEEEeCCc
Confidence 688996 99999999999996 9999999875
No 490
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=79.35 E-value=3 Score=29.31 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=26.4
Q ss_pred EEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 32 ~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
++|+|+|..+..++.-+... |.+|.|+|-.+.
T Consensus 1 L~I~GaG~va~al~~la~~l-g~~v~v~d~r~e 32 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALL-GFRVTVVDPRPE 32 (136)
T ss_dssp EEEES-STCHHHHHHHHHHC-TEEEEEEES-CC
T ss_pred CEEEeCcHHHHHHHHHHHhC-CCEEEEEcCCcc
Confidence 58999999999998887775 999999998865
No 491
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=79.34 E-value=3.4 Score=35.51 Aligned_cols=36 Identities=14% Similarity=0.174 Sum_probs=29.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
..-.++|+|+|+.|+.++.-+... |.+|.++|..+.
T Consensus 164 pg~kVlViGaG~iGL~Ai~~Ak~l-GA~V~a~D~~~~ 199 (509)
T PRK09424 164 PPAKVLVIGAGVAGLAAIGAAGSL-GAIVRAFDTRPE 199 (509)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHC-CCEEEEEeCCHH
Confidence 356899999999999987777665 888988887653
No 492
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=79.32 E-value=2.6 Score=35.73 Aligned_cols=34 Identities=15% Similarity=0.238 Sum_probs=30.2
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.++-|||.|..|..+|.+|+++ |++|.+.++-+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~-G~~V~v~dr~~~ 35 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASR-GFKISVYNRTYE 35 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHC-CCeEEEEeCCHH
Confidence 3688999999999999999996 999999988644
No 493
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=79.29 E-value=5.5 Score=30.81 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=31.7
Q ss_pred CCcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 27 ~~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
.+...++|+|+|.-+..+|.-+... |++|.|+|-.+.
T Consensus 98 ~p~~~L~IfGaG~va~~la~la~~l-Gf~V~v~D~R~~ 134 (246)
T TIGR02964 98 PPAPHVVLFGAGHVGRALVRALAPL-PCRVTWVDSREA 134 (246)
T ss_pred CCCCEEEEECCcHHHHHHHHHHhcC-CCEEEEEeCCcc
Confidence 3567999999999999999887775 999999997654
No 494
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=79.15 E-value=3.6 Score=34.57 Aligned_cols=35 Identities=11% Similarity=0.089 Sum_probs=29.3
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGD 64 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~ 64 (146)
.-.++|||+|..|.-+|..+.+. | .+|.|+++.+.
T Consensus 282 gk~VvVIGgG~~a~d~A~~a~~~-Ga~~Vtvv~r~~~ 317 (467)
T TIGR01318 282 GKRVVVLGGGDTAMDCVRTAIRL-GAASVTCAYRRDE 317 (467)
T ss_pred CCEEEEECCcHHHHHHHHHHHHc-CCCeEEEEEecCc
Confidence 34899999999999999888885 6 47999998754
No 495
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=79.04 E-value=3.6 Score=32.43 Aligned_cols=32 Identities=22% Similarity=0.306 Sum_probs=28.4
Q ss_pred cEEEECCCHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
.+-+||.|..|..+|.+|.++ |++|.+.++-+
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~-g~~v~v~dr~~ 33 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRG-GHEVVGYDRNP 33 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHC-CCeEEEEECCH
Confidence 477999999999999999996 99999998753
No 496
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=78.97 E-value=3.3 Score=38.25 Aligned_cols=34 Identities=18% Similarity=0.165 Sum_probs=29.3
Q ss_pred ccEEEECCCHHHHHHHHHHHHhCC-CcEEEEecCCC
Q psy3408 30 FDFIIVGGGSAGAVLANRLSEELD-WRVLLIEAGGD 64 (146)
Q Consensus 30 ~D~iIIG~G~aG~~~A~~L~~~~g-~~VlvLE~G~~ 64 (146)
-.++|||+|..|+-+|..|++. | ..|.|+|..+.
T Consensus 318 k~VvViG~G~~g~e~A~~L~~~-G~~vV~vv~~~~~ 352 (985)
T TIGR01372 318 KRIVVATNNDSAYRAAADLLAA-GIAVVAIIDARAD 352 (985)
T ss_pred CeEEEECCCHHHHHHHHHHHHc-CCceEEEEccCcc
Confidence 3789999999999999999996 7 67899998753
No 497
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=78.84 E-value=3.3 Score=35.59 Aligned_cols=33 Identities=30% Similarity=0.466 Sum_probs=28.7
Q ss_pred cccEEEECCCHHHHHHHHHHHHhCCCcEEEEecC
Q psy3408 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62 (146)
Q Consensus 29 ~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G 62 (146)
.-.++|+|+|-+|..+|..|++. |.+|.++.|-
T Consensus 379 ~k~vlIlGaGGagrAia~~L~~~-G~~V~i~nR~ 411 (529)
T PLN02520 379 GKLFVVIGAGGAGKALAYGAKEK-GARVVIANRT 411 (529)
T ss_pred CCEEEEECCcHHHHHHHHHHHHC-CCEEEEEcCC
Confidence 34689999999999999999996 8899998774
No 498
>PRK08328 hypothetical protein; Provisional
Probab=78.79 E-value=4.3 Score=30.94 Aligned_cols=37 Identities=30% Similarity=0.322 Sum_probs=30.2
Q ss_pred CcccEEEECCCHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 28 ~~~D~iIIG~G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
....++|||.|-.|+.+|..|++.+-.++.++|....
T Consensus 26 ~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~v 62 (231)
T PRK08328 26 KKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTP 62 (231)
T ss_pred hCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 4568999999999999999999974456788876543
No 499
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=78.56 E-value=3.8 Score=31.77 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=28.0
Q ss_pred EEEECC-CHHHHHHHHHHHHhCCCcEEEEecCCC
Q psy3408 32 FIIVGG-GSAGAVLANRLSEELDWRVLLIEAGGD 64 (146)
Q Consensus 32 ~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~~ 64 (146)
++|.|+ |.-|..+|.+|.++ |++|.++.+...
T Consensus 3 vlItG~~G~iG~~l~~~L~~~-g~~V~~~~r~~~ 35 (328)
T TIGR03466 3 VLVTGATGFVGSAVVRLLLEQ-GEEVRVLVRPTS 35 (328)
T ss_pred EEEECCccchhHHHHHHHHHC-CCEEEEEEecCc
Confidence 688885 99999999999996 899999998644
No 500
>PRK12828 short chain dehydrogenase; Provisional
Probab=78.27 E-value=4 Score=30.01 Aligned_cols=32 Identities=38% Similarity=0.494 Sum_probs=27.1
Q ss_pred cEEEECC-CHHHHHHHHHHHHhCCCcEEEEecCC
Q psy3408 31 DFIIVGG-GSAGAVLANRLSEELDWRVLLIEAGG 63 (146)
Q Consensus 31 D~iIIG~-G~aG~~~A~~L~~~~g~~VlvLE~G~ 63 (146)
-++|.|+ |.-|..+|.+|.++ |.+|+++.+..
T Consensus 9 ~vlItGatg~iG~~la~~l~~~-G~~v~~~~r~~ 41 (239)
T PRK12828 9 VVAITGGFGGLGRATAAWLAAR-GARVALIGRGA 41 (239)
T ss_pred EEEEECCCCcHhHHHHHHHHHC-CCeEEEEeCCh
Confidence 4888886 88899999999996 99999998743
Done!