RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3408
(146 letters)
>gnl|CDD|235000 PRK02106, PRK02106, choline dehydrogenase; Validated.
Length = 560
Score = 97.6 bits (244), Expect = 1e-24
Identities = 43/90 (47%), Positives = 54/90 (60%), Gaps = 8/90 (8%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS---ELP-GYWFNLLKSRQD 84
++D+II+G GSAG VLANRLSE+ D VLL+EAGG ++P F L R +
Sbjct: 5 EYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGPDYRWDFFIQMPAALAFPLQGKRYN 64
Query: 85 WAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
WAY T+P+ M NR PRGK LGG
Sbjct: 65 WAYETEPEPHM----NNRRMECPRGKVLGG 90
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 81.3 bits (201), Expect = 7e-19
Identities = 40/93 (43%), Positives = 55/93 (59%), Gaps = 7/93 (7%)
Query: 24 DNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG-DPPEASELP-GYWFNLLKS 81
+ ++D++IVG GSAG+VLA RLS+ VL++EAGG D ++P Y F +
Sbjct: 2 SEMKMEYDYVIVGSGSAGSVLAARLSDA-GLSVLVLEAGGPDRRPLIQMPAAYAFLMNGP 60
Query: 82 RQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
R DW +RT+P+ L R WPRGK LGG
Sbjct: 61 RYDWGFRTEPEP----HLRGRELAWPRGKVLGG 89
>gnl|CDD|233581 TIGR01810, betA, choline dehydrogenase. Choline dehydrogenase
catalyzes the conversion of exogenously supplied choline
into the intermediate glycine betaine aldehyde, as part
of a two-step oxidative reaction leading to the
formation of osmoprotectant betaine. This enzymatic
system can be found in both gram-positive and
gram-negative bacteria. As in Escherichia coli ,
Staphylococcus xylosus , and Sinorhizobium meliloti,
this enzyme is found associated in a transciptionally
co-induced gene cluster with betaine aldehyde
dehydrogenase, the second catalytic enzyme in this
reaction. Other gram-positive organisms have been shown
to employ a different enzymatic system, utlizing a
soluable choline oxidase or type III alcohol
dehydrogenase instead of choline dehydrogenase. This
enzyme is a member of the GMC oxidoreductase family
(pfam00732 and pfam05199), sharing a common
evoluntionary origin and enzymatic reaction with alcohol
dehydrogenase. Outgrouping from this model, Caulobacter
crescentus shares sequence homology with choline
dehydrogenase, yet other genes participating in this
enzymatic reaction have not currently been identified
[Cellular processes, Adaptations to atypical
conditions].
Length = 532
Score = 69.9 bits (171), Expect = 7e-15
Identities = 43/102 (42%), Positives = 55/102 (53%), Gaps = 19/102 (18%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG-----DP----PEASELPGYWFNLLKS 81
D+II+GGGSAG+VLA RLSE++ VL++EAGG D P A P
Sbjct: 1 DYIIIGGGSAGSVLAGRLSEDVSNSVLVLEAGGSDYPWDLLIQMPAALAYP-----AGNK 55
Query: 82 RQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPA-TGLIY 122
R +W Y T+P+ M NR RGK LGG + G+IY
Sbjct: 56 RYNWIYETEPEPHM----NNRRVGHARGKVLGGSSSINGMIY 93
>gnl|CDD|234421 TIGR03970, Rv0697, dehydrogenase, Rv0697 family. This model
describes a set of dehydrogenases belonging to the
glucose-methanol-choline oxidoreductase (GMC
oxidoreductase) family. Members of the present family
are restricted to Actinobacterial genome contexts
containing also members of families TIGR03962 and
TIGR03969 (the mycofactocin system), and are proposed
to be uniform in function.
Length = 487
Score = 50.2 bits (120), Expect = 4e-08
Identities = 21/42 (50%), Positives = 28/42 (66%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELP 72
D ++VGGGSAG V+A RLSE+ V ++EAG + S LP
Sbjct: 2 DVLVVGGGSAGCVVAARLSEDPSCTVTVLEAGPGYRDPSRLP 43
>gnl|CDD|215420 PLN02785, PLN02785, Protein HOTHEAD.
Length = 587
Score = 42.9 bits (101), Expect = 2e-05
Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
+D+I+VGGG+AG LA LS ++ VLL+E GG P
Sbjct: 56 YDYIVVGGGTAGCPLAATLS--QNFSVLLLERGGVP 89
>gnl|CDD|233671 TIGR01988, Ubi-OHases, Ubiquinone biosynthesis hydroxylase,
UbiH/UbiF/VisC/COQ6 family. This model represents a
family of FAD-dependent hydroxylases (monooxygenases)
which are all believed to act in the aerobic ubiquinone
biosynthesis pathway. A separate set of hydroxylases,
as yet undiscovered, are believed to be active under
anaerobic conditions. In E. coli three enzyme
activities have been described, UbiB (which acts first
at position 6, see TIGR01982), UbiH (which acts at
position 4,) and UbiF (which acts at position 5,). UbiH
and UbiF are similar to one another and form the basis
of this subfamily. Interestingly, E. coli contains
another hydroxylase gene, called visC, that is highly
similar to UbiF, adjacent to UbiH and, when mutated,
results in a phenotype similar to that of UbiH (which
has also been named visB). Several other species appear
to have three homologs in this family, although they
assort themselves differently on phylogenetic trees
(e.g. Xylella and Mesorhizobium) making it difficult to
ascribe a specific activity to each one. Eukaryotes
appear to have only a single homolog in this subfamily
(COQ6,) which complements UbiH, but also possess a
non-orthologous gene, COQ7 which complements UbiF
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Menaquinone and ubiquinone].
Length = 387
Score = 41.8 bits (99), Expect = 3e-05
Identities = 19/44 (43%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGY 74
D +IVGGG G LA L+ +V LIEA P A PG+
Sbjct: 1 DIVIVGGGPVGLALALALARSGGLKVALIEAT--PLPAPADPGF 42
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and
rfbD. It is known experimentally in E. coli,
Mycobacterium tuberculosis, and Klebsiella pneumoniae
[Cell envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 377
Score = 41.7 bits (98), Expect = 4e-05
Identities = 18/32 (56%), Positives = 25/32 (78%), Gaps = 1/32 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
FD+IIVG G +G VLAN L+ +L+ RVL++E
Sbjct: 1 MFDYIIVGAGLSGIVLANILA-QLNKRVLVVE 31
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 41.0 bits (97), Expect = 7e-05
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 4/41 (9%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA---GGD 64
+ ++D I++G G AG LA R + L +V LIE GG
Sbjct: 3 AQRYDAIVIGAGQAGPPLAARAA-GLGMKVALIERGLLGGT 42
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
biogenesis, outer membrane].
Length = 374
Score = 40.8 bits (96), Expect = 7e-05
Identities = 15/33 (45%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
FD++IVG G +GAV+A + +L RVL++E
Sbjct: 1 MFDYLIVGAGLSGAVIAEVAA-QLGKRVLIVEK 32
>gnl|CDD|235584 PRK05732, PRK05732, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 395
Score = 40.2 bits (95), Expect = 1e-04
Identities = 24/49 (48%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Query: 29 KFDFIIVGGGSAGAVLA---NRLSEELDWRVLLIEAGGDPPEASELPGY 74
+ D IIVGGG AGA LA +RLS V LIEA PE+ PG+
Sbjct: 3 RMDVIIVGGGMAGATLALALSRLSHG-GLPVALIEAFA--PESDAHPGF 48
>gnl|CDD|218770 pfam05834, Lycopene_cycl, Lycopene cyclase protein. This family
consists of lycopene beta and epsilon cyclase proteins.
Carotenoids with cyclic end groups are essential
components of the photosynthetic membranes in all
plants, algae, and cyanobacteria. These lipid-soluble
compounds protect against photo-oxidation, harvest
light for photosynthesis, and dissipate excess light
energy absorbed by the antenna pigments. The
cyclisation of lycopene (psi, psi-carotene) is a key
branch point in the pathway of carotenoid biosynthesis.
Two types of cyclic end groups are found in higher
plant carotenoids: the beta and epsilon rings.
Carotenoids with two beta rings are ubiquitous, and
those with one beta and one epsilon ring are common;
however, carotenoids with two epsilon rings are rare.
Length = 374
Score = 40.0 bits (94), Expect = 2e-04
Identities = 20/37 (54%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 31 DFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDPP 66
D +IVG G AG +LA RL + RVLLI+AG PP
Sbjct: 1 DLVIVGAGLAGLLLALRLRQARPGLRVLLIDAGPGPP 37
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 39.5 bits (93), Expect = 3e-04
Identities = 13/35 (37%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
++D +++G G AG V A R + +L +V L+E G
Sbjct: 4 EYDVVVIGAGPAGYVAAIRAA-QLGLKVALVEKGE 37
>gnl|CDD|233669 TIGR01984, UbiH, 2-polyprenyl-6-methoxyphenol 4-hydroxylase.
This model represents the FAD-dependent monoxygenase
responsible for the second hydroxylation step in the
aerobic ubiquinone bioynthetic pathway. The scope of
this model is limited to the proteobacteria. This
family is closely related to the UbiF hydroxylase which
catalyzes the final hydroxylation step. The enzyme has
also been named VisB due to a mutant VISible light
sensitive phenotype [Biosynthesis of cofactors,
prosthetic groups, and carriers, Menaquinone and
ubiquinone].
Length = 382
Score = 38.4 bits (90), Expect = 6e-04
Identities = 16/31 (51%), Positives = 18/31 (58%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
D IIVGGG G LA LS ++ LIEA
Sbjct: 1 DVIIVGGGLVGLSLALALSRLGKIKIALIEA 31
>gnl|CDD|223717 COG0644, FixC, Dehydrogenases (flavoproteins) [Energy production
and conversion].
Length = 396
Score = 38.2 bits (89), Expect = 6e-04
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
++D +IVG G AG+ A RL+ + VL++E G +P
Sbjct: 3 EYDVVIVGAGPAGSSAARRLA-KAGLDVLVLEKGSEP 38
>gnl|CDD|223652 COG0579, COG0579, Predicted dehydrogenase [General function
prediction only].
Length = 429
Score = 38.0 bits (89), Expect = 7e-04
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIE 60
+D +I+GGG GA A LSE E D V L+E
Sbjct: 3 DYDVVIIGGGIMGAATAYELSEYEPDLSVALLE 35
>gnl|CDD|205628 pfam13450, NAD_binding_8, NAD(P)-binding Rossmann-like domain.
Length = 66
Score = 35.5 bits (83), Expect = 0.001
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 34 IVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
IVG G +G V A L++ VL++E
Sbjct: 1 IVGAGLSGLVAAYLLAKR-GKDVLVLEKRDRI 31
>gnl|CDD|223737 COG0665, DadA, Glycine/D-amino acid oxidases (deaminating) [Amino
acid transport and metabolism].
Length = 387
Score = 37.6 bits (87), Expect = 0.001
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
S K D +I+GGG G A L+E V ++EAG A+
Sbjct: 2 SMKMDVVIIGGGIVGLSAAYYLAER-GADVTVLEAGEAGGGAA 43
>gnl|CDD|233672 TIGR01989, COQ6, ubiquinone biosynthesis monooxygenase COQ6.
This model represents the monooxygenase responsible for
the 4-hydroxylateion of the phenol ring in the aerobic
biosynthesis of ubiquinone.
Length = 437
Score = 37.4 bits (87), Expect = 0.001
Identities = 27/89 (30%), Positives = 34/89 (38%), Gaps = 22/89 (24%)
Query: 30 FDFIIVGGGSAGAVLANRLSEEL---DWRVLLIEAGGDPPEASE----LPGYWFN----- 77
FD +IVGGG G LA L D +VLL++A +P S G + N
Sbjct: 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDNPKLKSRNYEKPDGPYSNRVSSI 60
Query: 78 ------LLKSRQDWAY----RTQPDNRMF 96
K W + R QP RM
Sbjct: 61 TPASISFFKKIGAWDHIQSDRIQPFGRMQ 89
>gnl|CDD|235774 PRK06292, PRK06292, dihydrolipoamide dehydrogenase; Validated.
Length = 460
Score = 37.5 bits (88), Expect = 0.001
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
K+D I++G G AG V A R ++ +V LIE G
Sbjct: 3 KYDVIVIGAGPAGYVAARRAAKLGK-KVALIEKG 35
>gnl|CDD|219686 pfam07992, Pyr_redox_2, Pyridine nucleotide-disulphide
oxidoreductase. This family includes both class I and
class II oxidoreductases and also NADH oxidases and
peroxidases. This domain is actually a small NADH
binding domain within a larger FAD binding domain.
Length = 283
Score = 36.2 bits (84), Expect = 0.003
Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66
D +I+GGG AG A RL+ L +V LIE G
Sbjct: 1 DVVIIGGGPAGLAAAIRLA-RLGLKVALIEREGGTC 35
>gnl|CDD|223727 COG0654, UbiH, 2-polyprenyl-6-methoxyphenol hydroxylase and related
FAD-dependent oxidoreductases [Coenzyme metabolism /
Energy production and conversion].
Length = 387
Score = 36.2 bits (84), Expect = 0.003
Identities = 24/105 (22%), Positives = 29/105 (27%), Gaps = 10/105 (9%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE----ASELPGYWFNLLKSRQDW 85
D IVG G AG LA L+ V L+E L L+ W
Sbjct: 3 LDVAIVGAGPAGLALALALARA-GLDVTLLERAPRELLERGRGIALSPNALRALERLGLW 61
Query: 86 ----AYRTQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNHV 126
A P + M R LG A G +
Sbjct: 62 DRLEALGVPPLHVMVVDDGGRRLLIFDAAELGR-GALGYVVPRSD 105
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 36.0 bits (83), Expect = 0.004
Identities = 16/31 (51%), Positives = 22/31 (70%), Gaps = 1/31 (3%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
+D IIVGG AG VLA LS++ +VL++E
Sbjct: 34 YDVIIVGGSIAGPVLAKALSKQ-GRKVLMLE 63
>gnl|CDD|216400 pfam01266, DAO, FAD dependent oxidoreductase. This family
includes various FAD dependent oxidoreductases:
Glycerol-3-phosphate dehydrogenase EC:1.1.99.5,
Sarcosine oxidase beta subunit EC:1.5.3.1, D-alanine
oxidase EC:1.4.99.1, D-aspartate oxidase EC:1.4.3.1.
Length = 234
Score = 35.7 bits (83), Expect = 0.004
Identities = 13/39 (33%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
D +++GGG G A L+ V L+E G AS
Sbjct: 1 DVVVIGGGIVGLSTAYELARR-GLSVTLLERGDLASGAS 38
>gnl|CDD|130849 TIGR01789, lycopene_cycl, lycopene cyclase. This model
represents a family of bacterial lycopene cyclases
catalyzing the transformation of lycopene to carotene.
These enzymes are found in a limited spectrum of alpha
and gamma proteobacteria as well as Flavobacterium.
Length = 370
Score = 34.8 bits (80), Expect = 0.008
Identities = 18/33 (54%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 31 DFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAG 62
D IIVGGG AG ++A RL D+R+ +IEAG
Sbjct: 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAG 33
>gnl|CDD|181057 PRK07608, PRK07608, ubiquinone biosynthesis hydroxylase family
protein; Provisional.
Length = 388
Score = 34.5 bits (80), Expect = 0.013
Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASE 70
KFD ++VGGG GA LA L++ RV L+ P A +
Sbjct: 5 KFDVVVVGGGLVGASLALALAQS-GLRVALLAPRAPPRPADD 45
>gnl|CDD|236001 PRK07364, PRK07364, 2-octaprenyl-6-methoxyphenyl hydroxylase;
Validated.
Length = 415
Score = 34.2 bits (79), Expect = 0.013
Identities = 18/39 (46%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEA 68
+D IVGGG G LA L + R+ LIEA P EA
Sbjct: 19 YDVAIVGGGIVGLTLAAALKDS-GLRIALIEA--QPAEA 54
>gnl|CDD|233693 TIGR02032, GG-red-SF, geranylgeranyl reductase family. This
model represents a subfamily which includes
geranylgeranyl reductases involved in chlorophyll and
bacteriochlorophyll biosynthesis as well as other
related enzymes which may also act on geranylgeranyl
groups or related substrates [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 295
Score = 33.8 bits (78), Expect = 0.017
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGY 74
+D ++VG G AGA A RL+++ RVLL+ E P Y
Sbjct: 1 YDVVVVGAGPAGASAAYRLADK-GLRVLLL-------EKKSFPRY 37
>gnl|CDD|238836 cd01673, dNK, Deoxyribonucleoside kinase (dNK) catalyzes the
phosphorylation of deoxyribonucleosides to yield
corresponding monophosphates (dNMPs). This family
consists of various deoxynucleoside kinases including
deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC
2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC
2.7.1.21) kinases. They are key enzymes in the salvage
of deoxyribonucleosides originating from extra- or
intracellular breakdown of DNA.
Length = 193
Score = 33.7 bits (78), Expect = 0.019
Identities = 20/80 (25%), Positives = 33/80 (41%), Gaps = 19/80 (23%)
Query: 32 FIIVGG--GSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLL----KSRQDW 85
I+V G G+ + LA L+E L + V+ PE E L + + W
Sbjct: 1 VIVVEGNIGAGKSTLAKELAEHLGYEVV--------PEPVEPDVEGNPFLEKFYEDPKRW 52
Query: 86 AYRTQPDNRMFFGLENRVNH 105
A+ Q ++F L +R+
Sbjct: 53 AFPFQ----LYF-LLSRLKQ 67
>gnl|CDD|181199 PRK08020, ubiF, 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Reviewed.
Length = 391
Score = 33.8 bits (78), Expect = 0.020
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP-EASELP 72
+ D IVGGG GA LA L++ + V ++E P +A P
Sbjct: 1 MTNQPTDIAIVGGGMVGAALALGLAQH-GFSVAVLEHAAPAPFDADSQP 48
>gnl|CDD|130850 TIGR01790, carotene-cycl, lycopene cyclase family protein. This
family includes lycopene beta and epsilion cyclases
(which form beta and delta carotene, respectively) from
bacteria and plants as well as the plant
capsanthin/capsorubin and neoxanthin cyclases which
appear to have evolved from the plant lycopene
cyclases. The plant lycopene epsilon cyclases also
transform neurosporene to alpha zeacarotene.
Length = 388
Score = 33.6 bits (77), Expect = 0.022
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66
D ++GGG AG +A L+ RV LIE P
Sbjct: 1 DLAVIGGGPAGLAIALELA-RPGLRVQLIEPHPPIP 35
>gnl|CDD|235905 PRK06996, PRK06996, hypothetical protein; Provisional.
Length = 398
Score = 32.7 bits (75), Expect = 0.041
Identities = 17/43 (39%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWR---VLLIEAGGDPPEAS 69
FD IVG G G LA L+ R + LI+A P AS
Sbjct: 12 FDIAIVGAGPVGLALAGWLARRSATRALSIALIDARE--PAAS 52
>gnl|CDD|130488 TIGR01421, gluta_reduc_1, glutathione-disulfide reductase,
animal/bacterial. The tripeptide glutathione is an
important reductant, e.g., for maintaining the cellular
thiol/disulfide status and for protecting against
reactive oxygen species such as hydrogen peroxide.
Glutathione-disulfide reductase regenerates reduced
glutathione from oxidized glutathione (glutathione
disulfide) + NADPH. This model represents one of two
closely related subfamilies of glutathione-disulfide
reductase. Both are closely related to trypanothione
reductase, and separate models are built so each of the
three can describe proteins with conserved function.
This model describes glutathione-disulfide reductases
of animals, yeast, and a number of animal-resident
bacteria [Energy metabolism, Electron transport].
Length = 450
Score = 32.9 bits (75), Expect = 0.046
Identities = 13/32 (40%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
+D++++GGGS G A R + E + LL+EA
Sbjct: 3 YDYLVIGGGSGGIASARR-AAEHGAKALLVEA 33
>gnl|CDD|235701 PRK06116, PRK06116, glutathione reductase; Validated.
Length = 450
Score = 32.8 bits (76), Expect = 0.046
Identities = 27/79 (34%), Positives = 37/79 (46%), Gaps = 23/79 (29%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEA---GGD-------P----------PEAS 69
+D I++GGGS G ANR + +V LIEA GG P EA
Sbjct: 5 YDLIVIGGGSGGIASANR-AAMYGAKVALIEAKRLGGTCVNVGCVPKKLMWYGAQIAEAF 63
Query: 70 EL--PGYWFNLLKSRQDWA 86
PGY F++ +++ DWA
Sbjct: 64 HDYAPGYGFDVTENKFDWA 82
>gnl|CDD|235798 PRK06416, PRK06416, dihydrolipoamide dehydrogenase; Reviewed.
Length = 462
Score = 32.4 bits (75), Expect = 0.065
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
+D I++G G G V A R + +L +V ++E
Sbjct: 5 YDVIVIGAGPGGYVAAIRAA-QLGLKVAIVEKE 36
>gnl|CDD|224992 COG2081, COG2081, Predicted flavoproteins [General function
prediction only].
Length = 408
Score = 32.2 bits (74), Expect = 0.077
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
+FD II+GGG AG + A + + RVLLI+ G
Sbjct: 3 RFDVIIIGGGPAGLMAAISAA-KAGRRVLLIDKG 35
>gnl|CDD|235727 PRK06183, mhpA, 3-(3-hydroxyphenyl)propionate hydroxylase;
Validated.
Length = 500
Score = 32.2 bits (74), Expect = 0.081
Identities = 15/40 (37%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 21 TAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
A+ + D +IVG G G LAN L + RVL++E
Sbjct: 2 AAQHPDAHDTDVVIVGAGPVGLTLANLLGQY-GVRVLVLE 40
>gnl|CDD|234978 PRK01747, mnmC, bifunctional tRNA
(mnm(5)s(2)U34)-methyltransferase/FAD-dependent
cmnm(5)s(2)U34 oxidoreductase; Reviewed.
Length = 662
Score = 32.1 bits (74), Expect = 0.082
Identities = 16/31 (51%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
D I+GGG AGA LA L+ W+V L EA
Sbjct: 262 DAAIIGGGIAGAALALALA-RRGWQVTLYEA 291
>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.
Length = 428
Score = 31.8 bits (72), Expect = 0.10
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
FD IIVG G AG+V A L+ E +VL+IE G
Sbjct: 6 FDAIIVGAGLAGSVAALVLARE-GAQVLVIERGNSA 40
>gnl|CDD|224550 COG1635, THI4, Ribulose 1,5-bisphosphate synthetase, converts
PRPP to RuBP, flavoprotein [Carbohydrate transport
and metabolism].
Length = 262
Score = 31.5 bits (72), Expect = 0.12
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFN 77
D IIVG G +G A L++ +V + E G FN
Sbjct: 32 DVIIVGAGPSGLTAAYYLAKA-GLKVAIFERKLSFGGGIWGGGMLFN 77
>gnl|CDD|236341 PRK08850, PRK08850, 2-octaprenyl-6-methoxyphenol hydroxylase;
Validated.
Length = 405
Score = 31.7 bits (72), Expect = 0.12
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELP 72
D I+GGG G LA L +E D R+ +IE +ELP
Sbjct: 6 DVAIIGGGMVGLALAAAL-KESDLRIAVIEGQLPEEALNELP 46
>gnl|CDD|221798 pfam12831, FAD_oxidored, FAD dependent oxidoreductase. This
family of proteins contains FAD dependent
oxidoreductases and related proteins.
Length = 415
Score = 31.4 bits (72), Expect = 0.14
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 7/36 (19%)
Query: 31 DFIIVGGGSAG---AVLANRLSEELDWRVLLIEAGG 63
D ++VGGG AG A+ A R L +VLL+E G
Sbjct: 1 DVVVVGGGPAGVAAAIAAAR----LGAKVLLVERRG 32
>gnl|CDD|236579 PRK09585, anmK, anhydro-N-acetylmuramic acid kinase; Reviewed.
Length = 365
Score = 31.2 bits (72), Expect = 0.16
Identities = 19/64 (29%), Positives = 26/64 (40%), Gaps = 5/64 (7%)
Query: 10 TLISTVFTVVSTAED---NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66
TL T T S A G + ++ GGG+ L RL+ L V +A G
Sbjct: 267 TL--TELTAASIARAVRRLPPGPDELLVCGGGARNPTLMERLAALLPTEVATTDALGIDG 324
Query: 67 EASE 70
+A E
Sbjct: 325 DAKE 328
>gnl|CDD|223523 COG0446, HcaD, Uncharacterized NAD(FAD)-dependent dehydrogenases
[General function prediction only].
Length = 415
Score = 31.0 bits (70), Expect = 0.17
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 32 FIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGGDPP 66
+IVGGG+AG A L L + LI
Sbjct: 1 IVIVGGGAAGLSAATTLRRLLLAAEITLIGREPKYS 36
>gnl|CDD|236541 PRK09496, trkA, potassium transporter peripheral membrane
component; Reviewed.
Length = 453
Score = 31.2 bits (72), Expect = 0.18
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIE 60
+IVGGG+ G LA L E+ + V LIE
Sbjct: 235 MIVGGGNIGYYLAKLL-EKEGYSVKLIE 261
Score = 26.2 bits (59), Expect = 7.3
Identities = 11/19 (57%), Positives = 11/19 (57%)
Query: 33 IIVGGGSAGAVLANRLSEE 51
IIVG G G LA LS E
Sbjct: 4 IIVGAGQVGYTLAENLSGE 22
>gnl|CDD|178566 PLN02985, PLN02985, squalene monooxygenase.
Length = 514
Score = 31.0 bits (70), Expect = 0.21
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 20 STAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE 67
+ AE+ G D IIVG G G+ LA L+++ RV +IE PE
Sbjct: 34 AVAEERKDGATDVIIVGAGVGGSALAYALAKD-GRRVHVIERDLREPE 80
>gnl|CDD|233412 TIGR01438, TGR, thioredoxin and glutathione reductase
selenoprotein. This homodimeric, FAD-containing member
of the pyridine nucleotide disulfide oxidoreductase
family contains a C-terminal motif Cys-SeCys-Gly, where
SeCys is selenocysteine encoded by TGA (in some
sequence reports interpreted as a stop codon). In some
members of this subfamily, Cys-SeCys-Gly is replaced by
Cys-Cys-Gly. The reach of the selenium atom at the
C-term arm of the protein is proposed to allow broad
substrate specificity.
Length = 484
Score = 31.0 bits (70), Expect = 0.23
Identities = 10/33 (30%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
+D I++GGGS G A + +V+L++
Sbjct: 2 DYDLIVIGGGSGGLAAAKE-AAAYGAKVMLLDF 33
>gnl|CDD|234119 TIGR03140, AhpF, alkyl hydroperoxide reductase subunit F. This
enzyme is the partner of the peroxiredoxin (alkyl
hydroperoxide reductase) AhpC which contains the
peroxide-reactive cysteine. AhpF contains the reductant
(NAD(P)H) binding domain (pfam00070) and presumably acts
to resolve the disulfide which forms after oxidation of
the active site cysteine in AphC. This proteins contains
two paired conserved cysteine motifs, CxxCP and CxHCDGP
[Cellular processes, Detoxification, Cellular processes,
Adaptations to atypical conditions].
Length = 515
Score = 30.8 bits (70), Expect = 0.24
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 3 RMSSL-LLTLISTVFTVVSTAEDNISGKFDFIIVGGGSAGAVLA 45
RM LL + V + + +D ++VGGG AGA A
Sbjct: 185 RMDLAELLEKLEETAGVEAASALEQLDPYDVLVVGGGPAGAAAA 228
>gnl|CDD|223651 COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy
production and conversion].
Length = 532
Score = 30.7 bits (70), Expect = 0.26
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
+FD I++GGG GA +A + +V L+E G
Sbjct: 10 MEEFDVIVIGGGITGAGIARDAAGR-GLKVALVEKG 44
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 30.2 bits (69), Expect = 0.29
Identities = 25/109 (22%), Positives = 35/109 (32%), Gaps = 23/109 (21%)
Query: 25 NISGKFDFIIVGGGSAG----AVLANRLSEELDWRV---LLIEAGGDPPEASEL-----P 72
+ I V G SAG A +A R +E +LI G D SE
Sbjct: 65 ELGADPSRIAVAGDSAGGNLAAAVALRARDEGLPLPAGQVLIYPGLDLRTESESYNEYAD 124
Query: 73 GYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHW---PRGKGLGGFPAT 118
G L + DW + R++ +R + L G P
Sbjct: 125 GPL--LTRDDMDWFW------RLYLPGADRDDPLASPLFAADLSGLPPA 165
>gnl|CDD|178082 PLN02463, PLN02463, lycopene beta cyclase.
Length = 447
Score = 30.5 bits (69), Expect = 0.30
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEE 51
S D ++VGGG AG +A ++SE
Sbjct: 26 SRVVDLVVVGGGPAGLAVAQQVSEA 50
>gnl|CDD|217680 pfam03702, UPF0075, Uncharacterized protein family (UPF0075). The
proteins is this family are about 370 amino acids long
and have no known function.
Length = 365
Score = 30.4 bits (69), Expect = 0.31
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 16 FTVVSTAE---DNISGKFDFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGGDPPEASE 70
T V+ + ++ GGG+ +L RL+E L + V + G P+ E
Sbjct: 270 LTAVTIVDALLQAGPDCERLLVCGGGARNPLLMARLAELLPNVDVASTDELGLDPDYME 328
>gnl|CDD|178267 PLN02661, PLN02661, Putative thiazole synthesis.
Length = 357
Score = 30.2 bits (68), Expect = 0.34
Identities = 19/53 (35%), Positives = 28/53 (52%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQ 83
D +IVG GSAG A LS+ + +V +IE P + L G F+ + R+
Sbjct: 94 DVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGAWLGGQLFSAMVVRK 146
>gnl|CDD|215720 pfam00106, adh_short, short chain dehydrogenase. This family
contains a wide variety of dehydrogenases.
Length = 167
Score = 29.8 bits (68), Expect = 0.34
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 33 IIVGGGSA-GAVLANRLSEELDWRVLLIEAGGDPPEASEL 71
+I GG G LA L+ E ++L+ G P A+EL
Sbjct: 4 LITGGTGGLGLALARWLAAEGARHLVLVSRRGPAPGAAEL 43
>gnl|CDD|235704 PRK06126, PRK06126, hypothetical protein; Provisional.
Length = 545
Score = 30.3 bits (69), Expect = 0.35
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 7/38 (18%)
Query: 33 IIVGGGSAGAVLANRLSEELDWR---VLLIEAGGDPPE 67
+IVGGG G LA +L R +L+E
Sbjct: 11 LIVGGGPVGLALAL----DLGRRGVDSILVERKDGTAF 44
>gnl|CDD|215362 PLN02676, PLN02676, polyamine oxidase.
Length = 487
Score = 30.1 bits (68), Expect = 0.37
Identities = 20/58 (34%), Positives = 27/58 (46%), Gaps = 2/58 (3%)
Query: 6 SLLLTLISTVFTVVSTAEDNISGK--FDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
LLL +S + V A + K IIVG G +G A LSE +L++EA
Sbjct: 1 MLLLLSLSVLLAVHLFAVAAMDAKPSPSVIIVGAGMSGISAAKTLSEAGIEDILILEA 58
>gnl|CDD|181142 PRK07846, PRK07846, mycothione reductase; Reviewed.
Length = 451
Score = 29.9 bits (68), Expect = 0.44
Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
+D II+G GS ++L R + D R+ ++E G
Sbjct: 2 YDLIIIGTGSGNSILDERFA---DKRIAIVEKG 31
>gnl|CDD|236010 PRK07395, PRK07395, L-aspartate oxidase; Provisional.
Length = 553
Score = 30.0 bits (68), Expect = 0.48
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
Query: 24 DNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLI 59
+ +FD ++VG G+AG A L RV LI
Sbjct: 4 TILPSQFDVLVVGSGAAGLYAALCLPSH--LRVGLI 37
>gnl|CDD|217590 pfam03486, HI0933_like, HI0933-like protein.
Length = 405
Score = 29.8 bits (68), Expect = 0.49
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
+D I++GGG+AG + A + + RVLLI+ G
Sbjct: 1 YDVIVIGGGAAGLMAAISAA-KRGRRVLLIDKGKKL 35
>gnl|CDD|216949 pfam02254, TrkA_N, TrkA-N domain. This domain is found in a wide
variety of proteins. These protein include potassium
channels, phosphoesterases, and various other
transporters. This domain binds to NAD.
Length = 116
Score = 28.7 bits (65), Expect = 0.60
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 32 FIIVGGGSAGAVLANRLSEELDWRVLLIE 60
II+G G G LA L E V++I+
Sbjct: 1 IIIIGYGRVGRSLAEELREG-GPDVVVID 28
>gnl|CDD|222355 pfam13738, Pyr_redox_3, Pyridine nucleotide-disulphide
oxidoreductase.
Length = 202
Score = 29.2 bits (66), Expect = 0.68
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
++VG G+AG A+ L + D V++++ G P
Sbjct: 1 LVVGAGAAGMAFADHLLDLGDAPVIIVDRGAQP 33
>gnl|CDD|224983 COG2072, TrkA, Predicted flavoprotein involved in K+ transport
[Inorganic ion transport and metabolism].
Length = 443
Score = 29.3 bits (66), Expect = 0.70
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
D I+G G +G A L + ++ E D
Sbjct: 8 HTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDV 44
>gnl|CDD|145231 pfam01946, Thi4, Thi4 family. This family includes a putative
thiamine biosynthetic enzyme.
Length = 229
Score = 29.0 bits (65), Expect = 0.77
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFN 77
D +IVG G +G A L+++ +V +IE P + G F+
Sbjct: 19 DVVIVGAGPSGLTAAYYLAKK-GLKVAIIERSLSPGGGAWGGGMLFS 64
>gnl|CDD|166001 PLN02360, PLN02360, probable 6-phosphogluconolactonase.
Length = 268
Score = 29.1 bits (65), Expect = 0.81
Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 5/55 (9%)
Query: 18 VVSTAEDNISGKFDFIIVGGGSAGAVLA-----NRLSEELDWRVLLIEAGGDPPE 67
+ ++ + KFD I++G GS G V + L E+ DW + ++ PPE
Sbjct: 139 TIGVSDISDCPKFDLILLGMGSDGHVASLFPNHPALEEKDDWVTFITDSPKPPPE 193
>gnl|CDD|234868 PRK00934, PRK00934, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 285
Score = 28.7 bits (65), Expect = 0.85
Identities = 10/28 (35%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIE 60
+I+GG SA +LA+ ++ L+ + L+E
Sbjct: 1 MIIGG-SASQLLASEVARLLNTELALVE 27
>gnl|CDD|235241 PRK04176, PRK04176, ribulose-1,5-biphosphate synthetase;
Provisional.
Length = 257
Score = 29.0 bits (66), Expect = 0.87
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
D IVG G +G A L++ +V + E
Sbjct: 27 DVAIVGAGPSGLTAAYYLAKA-GLKVAVFE 55
>gnl|CDD|179979 PRK05257, PRK05257, malate:quinone oxidoreductase; Validated.
Length = 494
Score = 28.9 bits (66), Expect = 0.89
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIE 60
K D +++GGG A L L E E +W + + E
Sbjct: 5 KTDVVLIGGGIMSATLGTLLKELEPEWSITMFE 37
>gnl|CDD|168574 PRK06484, PRK06484, short chain dehydrogenase; Validated.
Length = 520
Score = 29.0 bits (65), Expect = 1.0
Identities = 9/37 (24%), Positives = 17/37 (45%), Gaps = 2/37 (5%)
Query: 33 IIVGGGSA-GAVLANRLSEELDWRVLLIEAGGDPPEA 68
I GG G +A+R + R+L+I+ + +
Sbjct: 273 AITGGARGIGRAVADRFAA-AGDRLLIIDRDAEGAKK 308
>gnl|CDD|183139 PRK11445, PRK11445, putative oxidoreductase; Provisional.
Length = 351
Score = 28.5 bits (64), Expect = 1.1
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
+D I+G G AG+ LA L+ ++ +V+ I+
Sbjct: 2 YDVAIIGLGPAGSALARLLAGKM--KVIAID 30
>gnl|CDD|203096 pfam04820, Trp_halogenase, Tryptophan halogenase. Tryptophan
halogenase catalyzes the chlorination of tryptophan to
form 7-chlorotryptophan. This is the first step in the
biosynthesis of pyrrolnitrin, an antibiotic with
broad-spectrum anti-fungal activity. Tryptophan
halogenase is NADH-dependent.
Length = 457
Score = 28.5 bits (64), Expect = 1.2
Identities = 13/33 (39%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 31 DFIIVGGGSAGAVLANRLSEELD--WRVLLIEA 61
+IVGGG+AG + A L+ L V L+E+
Sbjct: 1 KIVIVGGGTAGWMAAAALARALKGGLDVTLVES 33
>gnl|CDD|224172 COG1252, Ndh, NADH dehydrogenase, FAD-containing subunit [Energy
production and conversion].
Length = 405
Score = 28.4 bits (64), Expect = 1.3
Identities = 11/28 (39%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 34 IVGGGSAGAVLANRLSEEL-DWRVLLIE 60
I+GGG G A RL+ +L D + L++
Sbjct: 8 ILGGGFGGLSAAKRLARKLPDVEITLVD 35
Score = 26.4 bits (59), Expect = 6.2
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 12/44 (27%)
Query: 31 DFIIVGGGSAG----AVLANRLSEEL--------DWRVLLIEAG 62
+IVGGG G LA RL L + RV+L+EAG
Sbjct: 157 TIVIVGGGPTGVELAGELAERLHRLLKKFRVDPSELRVILVEAG 200
>gnl|CDD|237942 PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F;
Provisional.
Length = 517
Score = 28.6 bits (65), Expect = 1.4
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 3 RMS-SLLLTLISTVFTVVSTAEDNISGKFDFIIVGGGSAGA 42
RM+ +L + T + E N +D ++VGGG AGA
Sbjct: 184 RMTLEEILAKLDTGAAARAAEELNAKDPYDVLVVGGGPAGA 224
>gnl|CDD|225915 COG3380, COG3380, Predicted NAD/FAD-dependent oxidoreductase
[General function prediction only].
Length = 331
Score = 28.2 bits (63), Expect = 1.4
Identities = 12/33 (36%), Positives = 13/33 (39%), Gaps = 1/33 (3%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
IVG G AG A L E V + E G
Sbjct: 3 SIAIVGAGIAGLAAAYALREA-GREVTVFEKGR 34
>gnl|CDD|233368 TIGR01350, lipoamide_DH, dihydrolipoamide dehydrogenase. This
model describes dihydrolipoamide dehydrogenase, a
flavoprotein that acts in a number of ways. It is the
E3 component of dehydrogenase complexes for pyruvate,
2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can
also serve as the L protein of the glycine cleavage
system. This family includes a few members known to
have distinct functions (ferric leghemoglobin reductase
and NADH:ferredoxin oxidoreductase) but that may be
predicted by homology to act as dihydrolipoamide
dehydrogenase as well. The motif GGXCXXXGCXP near the
N-terminus contains a redox-active disulfide.
Length = 460
Score = 28.4 bits (64), Expect = 1.4
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
+D I++GGG G V A R + +L +V L+E
Sbjct: 2 YDVIVIGGGPGGYVAAIRAA-QLGLKVALVE 31
>gnl|CDD|235779 PRK06327, PRK06327, dihydrolipoamide dehydrogenase; Validated.
Length = 475
Score = 28.4 bits (64), Expect = 1.5
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPG 73
S +FD +++G G G V A R + +L +V IEA +P L G
Sbjct: 2 SKQFDVVVIGAGPGGYVAAIR-AAQLGLKVACIEAWKNPKGKPALGG 47
>gnl|CDD|216530 pfam01494, FAD_binding_3, FAD binding domain. This domain is
involved in FAD binding in a number of enzymes.
Length = 349
Score = 28.4 bits (64), Expect = 1.5
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
D +IVGGG AG +LA L+ RV+L+E
Sbjct: 3 DVLIVGGGPAGLMLALLLA-RAGVRVVLVE 31
>gnl|CDD|236374 PRK09077, PRK09077, L-aspartate oxidase; Provisional.
Length = 536
Score = 28.3 bits (64), Expect = 1.5
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
+ D +I+G G+AG LA RL+E RV ++ G
Sbjct: 8 QCDVLIIGSGAAGLSLALRLAEHR--RVAVLSKG 39
>gnl|CDD|178309 PLN02707, PLN02707, Soluble inorganic pyrophosphatase.
Length = 267
Score = 28.2 bits (63), Expect = 1.6
Identities = 26/77 (33%), Positives = 36/77 (46%), Gaps = 25/77 (32%)
Query: 42 AVLANRLSEELDWRVLLIEAGGDPPEASE----------LPGYWFNLLKSRQDWAYRT-- 89
VLA ELDW+V+ I A D P+AS PG L + +DW +R
Sbjct: 166 GVLAMIDEGELDWKVVAISA--DDPKASLVNDVDDVEKHFPG----TLTAIRDW-FRDYK 218
Query: 90 ----QPDNRMFFGLENR 102
+P N+ FGL+N+
Sbjct: 219 IPDGKPANK--FGLDNK 233
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 28.0 bits (62), Expect = 1.7
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 3/35 (8%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAG 62
KFD I+VG G AG+V A ++ LD VL+IE G
Sbjct: 5 KFDAIVVGAGVAGSVAALVMARAGLD--VLVIERG 37
>gnl|CDD|213807 TIGR03378, glycerol3P_GlpB, glycerol-3-phosphate dehydrogenase,
anaerobic, B subunit. Members of this protein family
are the B subunit, product of the glpB gene, of a
three-subunit, membrane-anchored, FAD-dependent
anaerobic glycerol-3-phosphate dehydrogenase [Energy
metabolism, Anaerobic].
Length = 419
Score = 28.1 bits (63), Expect = 1.8
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
FD II+GGG AG A RL+E + +I AG
Sbjct: 1 FDVIIIGGGLAGLSCALRLAEA-GKKCAIIAAG 32
>gnl|CDD|181346 PRK08275, PRK08275, putative oxidoreductase; Provisional.
Length = 554
Score = 28.1 bits (63), Expect = 1.8
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEEL-DWRVLLIE 60
+ D +++GGG+AG + A + E RVLL+E
Sbjct: 9 ETDILVIGGGTAGPMAAIKAKERNPALRVLLLE 41
>gnl|CDD|181196 PRK08010, PRK08010, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 441
Score = 28.1 bits (62), Expect = 1.8
Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
K+ +I+G G AG LA L++ WRV LIE
Sbjct: 3 KYQAVIIGFGKAGKTLAVTLAKA-GWRVALIE 33
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 28.1 bits (64), Expect = 1.8
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 28 GKFDFIIVGGGSAG--AVLA 45
++D I+VGGG AG A LA
Sbjct: 3 EEYDVIVVGGGHAGCEAALA 22
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 28.2 bits (63), Expect = 1.9
Identities = 8/35 (22%), Positives = 16/35 (45%), Gaps = 1/35 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
+D +++G G G A L+ +V ++E
Sbjct: 1 MPMYDVVVIGAGLNGLAAAALLARA-GLKVTVLEK 34
>gnl|CDD|223981 COG1053, SdhA, Succinate dehydrogenase/fumarate reductase,
flavoprotein subunit [Energy production and
conversion].
Length = 562
Score = 28.1 bits (63), Expect = 2.1
Identities = 11/32 (34%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
+FD +++GGG AG A +E +V L+
Sbjct: 6 EFDVVVIGGGGAGLRAAIEAAEA-GLKVALLS 36
>gnl|CDD|223643 COG0569, TrkA, K+ transport systems, NAD-binding component
[Inorganic ion transport and metabolism].
Length = 225
Score = 27.6 bits (62), Expect = 2.1
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
II+G G G +A LSEE V+LI+
Sbjct: 2 KIIIIGAGRVGRSVARELSEE-GHNVVLID 30
>gnl|CDD|151391 pfam10944, DUF2630, Protein of unknown function (DUF2630). This
bacterial family of proteins have no known function.
Length = 81
Score = 26.5 bits (59), Expect = 2.4
Identities = 14/34 (41%), Positives = 15/34 (44%), Gaps = 7/34 (20%)
Query: 47 RLSEELD--WRVL-----LIEAGGDPPEASELPG 73
RL LD W +L EAG DP EA P
Sbjct: 40 RLEVALDQCWDLLRQRRARREAGEDPDEAQVRPV 73
>gnl|CDD|183983 PRK13339, PRK13339, malate:quinone oxidoreductase; Reviewed.
Length = 497
Score = 27.7 bits (62), Expect = 2.4
Identities = 8/13 (61%), Positives = 9/13 (69%)
Query: 107 PRGKGLGGFPATG 119
P K LGGFP +G
Sbjct: 257 PESKHLGGFPISG 269
>gnl|CDD|238943 cd01985, ETF, The electron transfer flavoprotein (ETF) serves as a
specific electron acceptor for various mitochondrial
dehydrogenases. ETF transfers electrons to the main
respiratory chain via ETF-ubiquinone oxidoreductase. ETF
is an heterodimer that consists of an alpha and a beta
subunit which binds one molecule of FAD per dimer . A
similar system also exists in some bacteria. The
homologous pair of proteins (FixA/FixB) are essential
for nitrogen fixation. The alpha subunit of ETF is
structurally related to the bacterial nitrogen fixation
protein fixB which could play a role in a redox process
and feed electrons to ferredoxin. The beta subunit
protein is distantly related to and forms a heterodimer
with the alpha subunit.
Length = 181
Score = 27.2 bits (61), Expect = 2.4
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 28 GKFDFIIVGGGSAGAVLANRLSEELDW 54
K D I+ G S G LA R++ L
Sbjct: 90 EKPDLILAGATSIGKQLAPRVAALLGV 116
>gnl|CDD|181564 PRK08849, PRK08849,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Provisional.
Length = 384
Score = 27.8 bits (62), Expect = 2.5
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASE 70
K+D +VGGG GA A + + V +IE G P+A E
Sbjct: 3 KYDIAVVGGGMVGAATALGFA-KQGRSVAVIE--GGEPKAFE 41
>gnl|CDD|185420 PTZ00058, PTZ00058, glutathione reductase; Provisional.
Length = 561
Score = 27.7 bits (61), Expect = 2.7
Identities = 12/31 (38%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
+D I++GGGS G A R + +V L+E
Sbjct: 49 YDLIVIGGGSGGMAAARRAARN-KAKVALVE 78
>gnl|CDD|236214 PRK08274, PRK08274, tricarballylate dehydrogenase; Validated.
Length = 466
Score = 27.5 bits (62), Expect = 2.9
Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 5/36 (13%)
Query: 29 KFDFIIVGGGSAG--AVLANRLSEELDWRVLLIEAG 62
D +++GGG+A A LA R E VLL+EA
Sbjct: 4 MVDVLVIGGGNAALCAALAAR---EAGASVLLLEAA 36
>gnl|CDD|216296 pfam01094, ANF_receptor, Receptor family ligand binding region.
This family includes extracellular ligand binding
domains of a wide range of receptors. This family also
includes the bacterial amino acid binding proteins of
known structure.
Length = 343
Score = 27.4 bits (61), Expect = 3.1
Identities = 15/61 (24%), Positives = 24/61 (39%), Gaps = 2/61 (3%)
Query: 16 FTVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYW 75
F V + A S +I S+ A+ RL+ + + +I G PE S+ Y
Sbjct: 37 FAVAAAACLLKSKGVVAVIGPSCSSVAIAVARLAGA--FGIPMISYGATSPELSDKTRYP 94
Query: 76 F 76
Sbjct: 95 T 95
>gnl|CDD|215314 PLN02576, PLN02576, protoporphyrinogen oxidase.
Length = 496
Score = 27.3 bits (61), Expect = 3.3
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
D +VG G +G A L+ + VL+ EA
Sbjct: 14 DVAVVGAGVSGLAAAYALASKHGVNVLVTEA 44
>gnl|CDD|240393 PTZ00383, PTZ00383, malate:quinone oxidoreductase; Provisional.
Length = 497
Score = 27.4 bits (61), Expect = 3.3
Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
Query: 13 STVFTVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDW-RVLLIE 60
S S+ S +D +IVGGG G L LS+ + ++ LIE
Sbjct: 29 SNQSLNTSSGNRLGSDVYDVVIVGGGVTGTALFYTLSKFTNLKKIALIE 77
>gnl|CDD|236223 PRK08294, PRK08294, phenol 2-monooxygenase; Provisional.
Length = 634
Score = 27.3 bits (61), Expect = 3.5
Identities = 14/37 (37%), Positives = 18/37 (48%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE 67
D +IVG G AG LA +LS D ++E E
Sbjct: 34 DVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPGRLE 70
>gnl|CDD|132187 TIGR03143, AhpF_homolog, putative alkyl hydroperoxide reductase F
subunit. This family of thioredoxin reductase homologs
is found adjacent to alkylhydroperoxide reductase C
subunit predominantly in cases where there is only one
C subunit in the genome and that genome is lacking the
F subunit partner (also a thioredcxin reductase
homolog) that is usually found (TIGR03140).
Length = 555
Score = 27.1 bits (60), Expect = 3.7
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 10/51 (19%)
Query: 30 FDFIIVGGGSAG---AVLANRLSEELDWRVLLIE---AGGDPPEASELPGY 74
+D II+GGG AG + A R L+IE GG SE+ Y
Sbjct: 5 YDLIIIGGGPAGLSAGIYAGRAK----LDTLIIEKDDFGGQITITSEVVNY 51
>gnl|CDD|235412 PRK05329, PRK05329, anaerobic glycerol-3-phosphate dehydrogenase
subunit B; Validated.
Length = 422
Score = 27.1 bits (61), Expect = 3.7
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
KFD +++GGG AG A +E RV L+ G
Sbjct: 2 KFDVLVIGGGLAGLTAALAAAEA-GKRVALVAKG 34
>gnl|CDD|222141 pfam13454, NAD_binding_9, FAD-NAD(P)-binding.
Length = 153
Score = 26.4 bits (59), Expect = 3.9
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 3/30 (10%)
Query: 34 IVGGGSAGAVLANRLSEELDWR---VLLIE 60
I+G G G + RL R + + +
Sbjct: 2 IIGAGPRGLSVLERLLRRAPDRPLDITVFD 31
>gnl|CDD|181552 PRK08773, PRK08773,
2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol
hydroxylase; Validated.
Length = 392
Score = 27.1 bits (60), Expect = 4.1
Identities = 28/81 (34%), Positives = 36/81 (44%), Gaps = 15/81 (18%)
Query: 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP----EASELPGYWF-----NL 78
+ D +IVGGG GA A L++ V L+E G +PP + +L Y F L
Sbjct: 5 SRRDAVIVGGGVVGAACALALADA-GLSVALVE-GREPPRWQADQPDLRVYAFAADNAAL 62
Query: 79 LKSRQDW----AYRTQPDNRM 95
L W A R QP RM
Sbjct: 63 LDRLGVWPAVRAARAQPYRRM 83
>gnl|CDD|163618 cd00842, MPP_ASMase, acid sphingomyelinase and related proteins,
metallophosphatase domain. Acid sphingomyelinase
(ASMase) is a ubiquitously expressed phosphodiesterase
which hydrolyzes sphingomyelin in acid pH conditions to
form ceramide, a bioactive second messenger, as part of
the sphingomyelin signaling pathway. ASMase is
localized at the noncytosolic leaflet of biomembranes
(for example the luminal leaflet of endosomes,
lysosomes and phagosomes, and the extracellular leaflet
of plasma membranes). ASMase-deficient humans develop
Niemann-Pick disease. This disease is characterized by
lysosomal storage of sphingomyelin in all tissues.
Although ASMase-deficient mice are resistant to
stress-induced apoptosis, they have greater
susceptibility to bacterial infection. The latter
correlates with defective phagolysosomal fusion and
antibacterial killing activity in ASMase-deficient
macrophages. ASMase belongs to the metallophosphatase
(MPP) superfamily. MPPs are functionally diverse, but
all share a conserved domain with an active site
consisting of two metal ions (usually manganese, iron,
or zinc) coordinated with octahedral geometry by a cage
of histidine, aspartate, and asparagine residues. The
MPP superfamily includes: the phosphoprotein
phosphatases (PPPs), Mre11/SbcD-like exonucleases,
Dbr1-like RNA lariat debranching enzymes, YfcE-like
phosphodiesterases, purple acid phosphatases (PAPs),
YbbF-like UDP-2,3-diacylglucosamine hydrolases, and
acid sphingomyelinases (ASMases). The conserved domain
is a double beta-sheet sandwich with a di-metal active
site made up of residues located at the C-terminal side
of the sheets. This domain is thought to allow for
productive metal coordination.
Length = 296
Score = 26.9 bits (60), Expect = 4.1
Identities = 10/39 (25%), Positives = 13/39 (33%), Gaps = 2/39 (5%)
Query: 17 TVVSTAED--NISGKFDFIIVGGGSAGAVLANRLSEELD 53
V S E K DFI+ G + + E L
Sbjct: 54 LVESALEAIKKNHPKPDFILWTGDLVRHDVDEQTPETLV 92
>gnl|CDD|232901 TIGR00275, TIGR00275, flavoprotein, HI0933 family. The model
when searched with a partial length search brings in
proteins with a dinucleotide-binding motif (Rossman
fold) over the initial 40 residues of the model,
including oxidoreductases and dehydrogenases. Partially
characterized members include an FAD-binding protein
from Bacillus cereus and flavoprotein HI0933 from
Haemophilus influenzae [Unknown function, Enzymes of
unknown specificity].
Length = 400
Score = 26.8 bits (60), Expect = 4.3
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
II+GGG+AG + A + E VLL+E
Sbjct: 1 IIIGGGAAGLMAAITAARE-GLSVLLLEKNK 30
>gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar
proteins. ParM is a plasmid-encoded bacterial homolog
of actin, which polymerizes into filaments similar to
F-actin, and plays a vital role in plasmid segregation.
ParM filaments segregate plasmids paired at midcell into
the individual daughter cells. This subfamily also
contains Thermoplasma acidophilum Ta0583, an active
ATPase at physiological temperatures, which has a
propensity to form filaments.
Length = 312
Score = 27.0 bits (60), Expect = 4.3
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 32 FIIVGGGSAGAVLANRLSEELDWRVLLIE 60
I+VGGG+ +L L E V+L++
Sbjct: 274 VILVGGGA--ILLKEYLKELFPENVVLVD 300
>gnl|CDD|216176 pfam00890, FAD_binding_2, FAD binding domain. This family
includes members that bind FAD. This family includes
the flavoprotein subunits from succinate and fumarate
dehydrogenase, aspartate oxidase and the alpha subunit
of adenylylsulphate reductase.
Length = 401
Score = 26.9 bits (60), Expect = 4.4
Identities = 10/33 (30%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
D +++G G AG A +E +V ++E G
Sbjct: 1 DVVVIGSGLAGLAAALEAAEA-GLKVAVVEKGQ 32
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 27.0 bits (60), Expect = 4.5
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
+D I++G G AG LA +L+ +V L+E
Sbjct: 3 TYDLIVIGFGKAGKTLAAKLA-SAGKKVALVE 33
>gnl|CDD|236385 PRK09126, PRK09126, hypothetical protein; Provisional.
Length = 392
Score = 26.8 bits (60), Expect = 4.5
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
D ++VG G AG A L+ +V LIE
Sbjct: 3 HSDIVVVGAGPAGLSFARSLA-GSGLKVTLIE 33
>gnl|CDD|216089 pfam00732, GMC_oxred_N, GMC oxidoreductase. This family of
proteins bind FAD as a cofactor.
Length = 218
Score = 26.5 bits (59), Expect = 4.6
Identities = 8/14 (57%), Positives = 12/14 (85%)
Query: 30 FDFIIVGGGSAGAV 43
+D++ GGGSAG+V
Sbjct: 1 YDYLYEGGGSAGSV 14
>gnl|CDD|235235 PRK04165, PRK04165, acetyl-CoA decarbonylase/synthase complex
subunit gamma; Provisional.
Length = 450
Score = 26.7 bits (60), Expect = 4.7
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 8/42 (19%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGY 74
II G AVL+ + E W VL+ G P E+S +P +
Sbjct: 409 IIPGLA---AVLSGDIEELTGWEVLV---G--PRESSGIPAF 442
>gnl|CDD|183292 PRK11728, PRK11728, hydroxyglutarate oxidase; Provisional.
Length = 393
Score = 26.7 bits (60), Expect = 4.7
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Query: 30 FDFIIVGGGSAGAVLANRLSEEL-DWRVLLIE 60
+DF+I+GGG G A +L E R+ ++E
Sbjct: 3 YDFVIIGGGIVGLSTAMQLQERYPGARIAVLE 34
>gnl|CDD|170080 PRK09754, PRK09754, phenylpropionate dioxygenase ferredoxin
reductase subunit; Provisional.
Length = 396
Score = 26.8 bits (59), Expect = 5.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 32 FIIVGGGSAGAVLANRLSEE 51
IIVGGG A A+ A L ++
Sbjct: 6 IIIVGGGQAAAMAAASLRQQ 25
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 26.8 bits (60), Expect = 5.2
Identities = 13/32 (40%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 34 IVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
IVGGG AG A RL++ V + EA
Sbjct: 4 IVGGGIAGLAAAYRLAKR-GHEVTVFEADDQL 34
>gnl|CDD|225313 COG2515, Acd, 1-aminocyclopropane-1-carboxylate deaminase [Amino
acid transport and metabolism].
Length = 323
Score = 26.5 bits (59), Expect = 5.4
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 3/45 (6%)
Query: 29 KFDFIIVGGGSAG---AVLANRLSEELDWRVLLIEAGGDPPEASE 70
KFD ++V GS G +L D V+ I+ DP + E
Sbjct: 180 KFDSVVVAPGSGGTHAGLLVGLAQLGPDVEVIGIDVSADPEKLKE 224
>gnl|CDD|225307 COG2509, COG2509, Uncharacterized FAD-dependent dehydrogenases
[General function prediction only].
Length = 486
Score = 26.5 bits (59), Expect = 5.8
Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 4/46 (8%)
Query: 23 EDNISGKFDFIIVGGGSAGAVLANRLSEEL----DWRVLLIEAGGD 64
E ++ D +IVG G AG A LS + ++ +++ G D
Sbjct: 12 EALMNAALDVVIVGAGPAGLFAAYELSGDARKVPILKIYVVDVGLD 57
>gnl|CDD|238429 cd00833, PKS, polyketide synthases (PKSs) polymerize simple fatty
acids into a large variety of different products, called
polyketides, by successive decarboxylating Claisen
condensations. PKSs can be divided into 2 groups,
modular type I PKSs consisting of one or more large
multifunctional proteins and iterative type II PKSs,
complexes of several monofunctional subunits.
Length = 421
Score = 26.4 bits (59), Expect = 6.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Query: 38 GSAGAVLANRLSEELDWR 55
G++ A LANR+S D R
Sbjct: 143 GTSRAFLANRISYFFDLR 160
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 26.7 bits (59), Expect = 6.3
Identities = 29/96 (30%), Positives = 38/96 (39%), Gaps = 28/96 (29%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG------------------DPPEASELP 72
D I+VG G AG V A L++ RVL+++ G D PE L
Sbjct: 7 DVIVVGAGLAGLVAAAELADA-GKRVLILDQEGEQNLGGQAFWSFGGLFLVDSPEQRRL- 64
Query: 73 GYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPR 108
G +L +RQDW D +HWPR
Sbjct: 65 GIRDSLDLARQDWFGTAAFDRPE--------DHWPR 92
>gnl|CDD|224979 COG2068, COG2068, Uncharacterized MobA-related protein [General
function prediction only].
Length = 199
Score = 26.1 bits (58), Expect = 6.5
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 21 TAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVL 57
+AE +S D +IV G A L +L V+
Sbjct: 37 SAETALSAGLDRVIVVTGHRVAEAVEALLAQLGVTVV 73
>gnl|CDD|130387 TIGR01320, mal_quin_oxido, malate:quinone-oxidoreductase. This
membrane-associated enzyme is an alternative to the
better-known NAD-dependent malate dehydrogenase as part
of the TCA cycle. The reduction of a quinone rather than
NAD+ makes the reaction essentially irreversible in the
direction of malate oxidation to oxaloacetate. Both
forms of malate dehydrogenase are active in E. coli;
disruption of this form causes less phenotypic change.
In some bacteria, this form is the only or the more
important malate dehydrogenase [Energy metabolism, TCA
cycle].
Length = 483
Score = 26.3 bits (58), Expect = 7.3
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 107 PRGKGLGGFPATGL 120
P KG GFP +GL
Sbjct: 250 PEVKGFAGFPVSGL 263
>gnl|CDD|226906 COG4529, COG4529, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 474
Score = 26.2 bits (58), Expect = 7.5
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 29 KFDFIIVGGGSAGAVLANRL 48
F I+GGG +G +A L
Sbjct: 1 MFKVAIIGGGFSGIYMAAHL 20
>gnl|CDD|223108 COG0029, NadB, Aspartate oxidase [Coenzyme metabolism].
Length = 518
Score = 26.1 bits (58), Expect = 7.8
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLI 59
D +I+G G AG A L+ RV ++
Sbjct: 9 DVLIIGSGLAGLTAALSLAPSF--RVTVL 35
>gnl|CDD|99961 cd03785, GT1_MurG, MurG is an N-acetylglucosaminyltransferase,
the last enzyme involved in the intracellular phase of
peptidoglycan biosynthesis. It transfers
N-acetyl-D-glucosamine (GlcNAc) from UDP-GlcNAc to the
C4 hydroxyl of a lipid-linked N-acetylmuramoyl
pentapeptide (NAM). The resulting disaccharide is then
transported across the cell membrane, where it is
polymerized into NAG-NAM cell-wall repeat structure.
MurG belongs to the GT-B structural superfamily of
glycoslytransferases, which have characteristic N- and
C-terminal domains, each containing a typical Rossmann
fold. The two domains have high structural homology
despite minimal sequence homology. The large cleft
that separates the two domains includes the catalytic
center and permits a high degree of flexibility.
Length = 350
Score = 25.9 bits (58), Expect = 8.0
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 6/33 (18%)
Query: 32 FIIVGGGSAGAV-----LANRLSEELDWRVLLI 59
+I GGG+ G + LA L E VL +
Sbjct: 2 ILIAGGGTGGHIFPALALAEELRER-GAEVLFL 33
>gnl|CDD|185335 PRK15438, PRK15438, erythronate-4-phosphate dehydrogenase PdxB;
Provisional.
Length = 378
Score = 26.0 bits (57), Expect = 8.2
Identities = 16/35 (45%), Positives = 18/35 (51%), Gaps = 5/35 (14%)
Query: 34 IVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEA 68
IVG G+ G L RL E L + LL DPP A
Sbjct: 121 IVGVGNVGRRLQARL-EALGIKTLLC----DPPRA 150
>gnl|CDD|223566 COG0492, TrxB, Thioredoxin reductase [Posttranslational
modification, protein turnover, chaperones].
Length = 305
Score = 26.1 bits (58), Expect = 8.2
Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 7/40 (17%)
Query: 29 KFDFIIVGGGSAG---AVLANRLSEELDWRVLLIEAGGDP 65
+D II+GGG AG A+ A R +V+LI GG+P
Sbjct: 3 IYDVIIIGGGPAGLTAAIYAAR----AGLKVVLILEGGEP 38
>gnl|CDD|212047 cd11477, SLC5sbd_u1, Uncharacterized bacterial solute carrier 5
subfamily; putative solute-binding domain. SLC5 (also
called the sodium/glucose cotransporter family or solute
sodium symporter family) is a family of proteins that
co-transports Na+ with sugars, amino acids, inorganic
ions or vitamins. Prokaryotic members of this family
include Vibrio parahaemolyticus glucose/galactose
(vSGLT), and Escherichia coli proline (PutP) and
pantothenate (PutF) cotransporters. One member of the
SLC5 family, human SGLT3, has been characterized as a
glucose sensor and not a transporter. This subfamily
belongs to the solute carrier 5 (SLC5) transporter
family.
Length = 495
Score = 26.0 bits (58), Expect = 8.4
Identities = 15/45 (33%), Positives = 25/45 (55%), Gaps = 3/45 (6%)
Query: 1 MVRMSSLLLTLISTVFTVVSTAEDNISGKFDFIIVGGGSAGAVLA 45
+ R++++L L+S V V+ A D+I G FD ++ G G L
Sbjct: 372 VGRLATVLFGLLSIV---VALASDSIGGAFDIVLALGAGLGGPLL 413
>gnl|CDD|214355 CHL00076, chlB, photochlorophyllide reductase subunit B.
Length = 513
Score = 26.1 bits (58), Expect = 8.8
Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 47 RLSEELDWRV-LLIEAGGDPPEASELPGYWFNLLKSRQ 83
RL ++L + +I GG + LP WFN++ R+
Sbjct: 187 RLLQDLGIEINQIIPEGGSVEDLKNLPKAWFNIVPYRE 224
>gnl|CDD|215308 PLN02568, PLN02568, polyamine oxidase.
Length = 539
Score = 25.9 bits (57), Expect = 8.9
Identities = 11/41 (26%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Query: 26 ISGKFDFIIVGGGSAGAVLANRL----SEELDWRVLLIEAG 62
++ K +I+G G AG AN+L + + + ++E G
Sbjct: 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGG 42
>gnl|CDD|233700 TIGR02053, MerA, mercuric reductase. This model represents the
mercuric reductase found in the mer operon for the
detoxification of mercury compounds. MerA is a
FAD-containing flavoprotein which reduces Hg(II) to
Hg(0) utilizing NADPH [Cellular processes,
Detoxification].
Length = 463
Score = 25.8 bits (57), Expect = 9.0
Identities = 12/36 (33%), Positives = 19/36 (52%), Gaps = 7/36 (19%)
Query: 30 FDFIIVGGGSAG---AVLANRLSEELDWRVLLIEAG 62
+D +I+G G+A A+ A EL V ++E G
Sbjct: 1 YDLVIIGSGAAAFAAAIKAA----ELGASVAMVERG 32
>gnl|CDD|215341 PLN02635, PLN02635, disproportionating enzyme.
Length = 538
Score = 25.9 bits (57), Expect = 9.0
Identities = 21/54 (38%), Positives = 25/54 (46%), Gaps = 5/54 (9%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEA-SELPGYWFNLLKSRQDW 85
I VGG SA V ANR L+ + G PP+A SE W + L DW
Sbjct: 246 IYVGGHSAD-VWANRKLFLLNKTGFPLLVSGVPPDAFSETGQLWGSPL---YDW 295
>gnl|CDD|129242 TIGR00136, gidA, glucose-inhibited division protein A. GidA, the
longer of two forms of GidA-related proteins, appears
to be present in all complete eubacterial genomes so
far, as well as Saccharomyces cerevisiae. A subset of
these organisms have a closely related protein. GidA is
absent in the Archaea. It appears to act with MnmE, in
an alpha2/beta2 heterotetramer, in the
5-carboxymethylaminomethyl modification of uridine 34
in certain tRNAs. The shorter, related protein,
previously called gid or gidA(S), is now called TrmFO
(see model TIGR00137) [Protein synthesis, tRNA and rRNA
base modification].
Length = 617
Score = 25.8 bits (57), Expect = 9.6
Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 5/32 (15%)
Query: 30 FDFIIVGGGSAG--AVLANRLSEELDWRVLLI 59
FD I++GGG AG A LA + + + LL+
Sbjct: 1 FDVIVIGGGHAGCEAALA---AARMGAKTLLL 29
>gnl|CDD|180319 PRK05945, sdhA, succinate dehydrogenase flavoprotein subunit;
Reviewed.
Length = 575
Score = 25.8 bits (57), Expect = 9.7
Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%)
Query: 29 KFDFIIVGGGSAG---AVLANRLSEELD 53
+ D +IVGGG AG A+ RL LD
Sbjct: 3 EHDVVIVGGGLAGCRAALEIKRLDPSLD 30
>gnl|CDD|214890 smart00893, ETF, Electron transfer flavoprotein domain. Electron
transfer flavoproteins (ETFs) serve as specific electron
acceptors for primary dehydrogenases, transferring the
electrons to terminal respiratory systems. They can be
functionally classified into constitutive,
"housekeeping" ETFs, mainly involved in the oxidation of
fatty acids (Group I), and ETFs produced by some
prokaryotes under specific growth conditions, receiving
electrons only from the oxidation of specific substrates
(Group II). ETFs are heterodimeric proteins composed of
an alpha and beta subunit, and contain an FAD cofactor
and AMP. ETF consists of three domains: domains I and II
are formed by the N- and C-terminal portions of the
alpha subunit, respectively, while domain III is formed
by the beta subunit. Domains I and III share an almost
identical alpha-beta-alpha sandwich fold, while domain
II forms an alpha-beta-alpha sandwich similar to that of
bacterial flavodoxins. FAD is bound in a cleft between
domains II and III, while domain III binds the AMP
molecule. Interactions between domains I and III
stabilise the protein, forming a shallow bowl where
domain II resides. This entry represents the N-terminal
domain of both the alpha and beta subunits from Group I
and Group II ETFs.
Length = 185
Score = 25.7 bits (57), Expect = 9.8
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVL 57
K D ++ G S G LA RL+ L +
Sbjct: 82 EKPDLVLAGATSDGKQLAPRLAALLGVPQI 111
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.139 0.427
Gapped
Lambda K H
0.267 0.0751 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,629,523
Number of extensions: 705171
Number of successful extensions: 1056
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1034
Number of HSP's successfully gapped: 169
Length of query: 146
Length of database: 10,937,602
Length adjustment: 88
Effective length of query: 58
Effective length of database: 7,034,450
Effective search space: 407998100
Effective search space used: 407998100
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.5 bits)