RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3408
(146 letters)
>1gpe_A Protein (glucose oxidase); oxidoreductase(flavoprotein); HET: NAG
BMA MAN FAD; 1.80A {Penicillium amagasakiense} SCOP:
c.3.1.2 d.16.1.1
Length = 587
Score = 128 bits (323), Expect = 1e-35
Identities = 30/100 (30%), Positives = 45/100 (45%), Gaps = 9/100 (9%)
Query: 18 VVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL---PGY 74
++S +D+II GGG G +A +L+E +VL+IE G + P
Sbjct: 13 LLSDPSKVAGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEKGFYESNDGAIIEDPNA 72
Query: 75 WFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+ + + D Y T P + NR N+ GKGLGG
Sbjct: 73 YGQIFGTTVDQNYLTVP------LINNRTNNIKAGKGLGG 106
>3qvp_A Glucose oxidase; oxidoreductase; HET: NAG BMA MAN FAD; 1.20A
{Aspergillus niger} PDB: 1gal_A* 1cf3_A* 3qvr_A*
Length = 583
Score = 127 bits (321), Expect = 2e-35
Identities = 28/101 (27%), Positives = 44/101 (43%), Gaps = 8/101 (7%)
Query: 17 TVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL---PG 73
++++ +D D+II GGG G A RL+E + VL+IE+G + +
Sbjct: 7 SLLTDPKDVSGRTVDYIIAGGGLTGLTTAARLTENPNISVLVIESGSYESDRGPIIEDLN 66
Query: 74 YWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+ ++ S D AY T N+ G GLGG
Sbjct: 67 AYGDIFGSSVDHAYETVEL-----ATNNQTALIRSGNGLGG 102
>3fim_B ARYL-alcohol oxidase; AAO, lignin degradation, oxidoreductase,
flavoprotein; HET: FAD; 2.55A {Pleurotus eryngii}
Length = 566
Score = 123 bits (311), Expect = 5e-34
Identities = 33/90 (36%), Positives = 47/90 (52%), Gaps = 7/90 (7%)
Query: 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG--DPPEASELP-GYWFNLLKSRQD 84
FD+++VG G+AG V+A RL+E+ D VL++EAG + +E P + S D
Sbjct: 1 ADFDYVVVGAGNAGNVVAARLTEDPDVSVLVLEAGVSDENVLGAEAPLLAPGLVPNSIFD 60
Query: 85 WAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
W Y T G R +PRG+ LGG
Sbjct: 61 WNYTTTAQA----GYNGRSIAYPRGRMLGG 86
>3q9t_A Choline dehydrogenase and related flavoproteins;
glucose-methanol-choline oxidoreductase family, formate
OXID formyl-FAD, oxidoreductase; HET: FAY; 2.24A
{Aspergillus oryzae}
Length = 577
Score = 122 bits (309), Expect = 1e-33
Identities = 36/90 (40%), Positives = 47/90 (52%), Gaps = 9/90 (10%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL---PGYWFNLLKSRQDWA 86
FDF+IVGGG+AG +A RL+E + VL++EAG PE P +L S+ DWA
Sbjct: 7 FDFVIVGGGTAGNTVAGRLAENPNVTVLIVEAGIGNPEDIPEITTPSSAMDLRNSKYDWA 66
Query: 87 YRTQPDNRMFFGLENRVNHWP--RGKGLGG 114
Y+T + P RGK LGG
Sbjct: 67 YKTTMVR----RDDYERIEKPNTRGKTLGG 92
>1ju2_A HydroxynitrIle lyase; flavin, GMC oxidoreductase, almond,
cyanogenesis; HET: NAG NDG FUC BMA MAN FAD; 1.47A
{Prunus dulcis} SCOP: c.3.1.2 d.16.1.1 PDB: 3gdp_A*
3gdn_A*
Length = 536
Score = 119 bits (300), Expect = 1e-32
Identities = 28/100 (28%), Positives = 48/100 (48%), Gaps = 12/100 (12%)
Query: 18 VVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELP---GY 74
+ + G +D++IVGGG++G LA LSE ++VL++E G P + G+
Sbjct: 15 AYDATDLELEGSYDYVIVGGGTSGCPLAATLSE--KYKVLVLERGSLPTAYPNVLTADGF 72
Query: 75 WFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+NL +Q+ +T + + RG+ LGG
Sbjct: 73 VYNL---QQEDDGKTPVER----FVSEDGIDNVRGRVLGG 105
>3t37_A Probable dehydrogenase; BET alpha beta fold, ADP binding,
oxidoreductase; HET: FAD; 2.19A {Mesorhizobium loti}
Length = 526
Score = 117 bits (296), Expect = 6e-32
Identities = 41/96 (42%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 20 STAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG-DPPEASELPGYWFNL 78
+ A+ + D +IVGGGSAG++LA RLSE+ D RVLLIEAG P W L
Sbjct: 8 TRAKVEHAPNCDIVIVGGGSAGSLLAARLSEDPDSRVLLIEAGEEPTDPDIWNPAAWPAL 67
Query: 79 LKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
DW YRT+ G R +HW RG+ +GG
Sbjct: 68 QGRSYDWDYRTEAQA----GTAGRAHHWARGRLIGG 99
>2jbv_A Choline oxidase; alcohol oxidation, flavoenyzme oxidase, covalently
linked FAD, C4A-adduct, flavoprotein, oxidoreductase;
HET: FAO; 1.86A {Arthrobacter globiformis} PDB: 3nne_A*
3ljp_A*
Length = 546
Score = 114 bits (289), Expect = 6e-31
Identities = 36/88 (40%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG-DPPEASELP-GYWFNLLKSRQDWA 86
+FD+I+VGGGSAGA +A RLSE+ V L+EAG D L W LL+S DW
Sbjct: 13 EFDYIVVGGGSAGAAVAARLSEDPAVSVALVEAGPDDRGVPEVLQLDRWMELLESGYDWD 72
Query: 87 YRTQPDNRMFFGLENRVNHWPRGKGLGG 114
Y +P N R K +GG
Sbjct: 73 YPIEPQENG-----NSFMRHARAKVMGG 95
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 102 bits (257), Expect = 1e-26
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 13/96 (13%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD--------PPEASELPGYWFNL 78
+ +D+IIVG G G + A+RLSE +VLL+E GG
Sbjct: 5 ATPYDYIIVGAGPGGIIAADRLSEA-GKKVLLLERGGPSTKQTGGTYVAPWATSSGLTKF 63
Query: 79 LKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGG 114
+ T + + G +GG
Sbjct: 64 DIPGLFESLFTDSNP----FWWCKDITVFAGCLVGG 95
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 56.6 bits (136), Expect = 2e-10
Identities = 24/115 (20%), Positives = 41/115 (35%), Gaps = 24/115 (20%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG----GDPPEASELPGYWFNLLKS---- 81
+++G G AV A RL E + L++E G P+ + G +S
Sbjct: 6 VPAVVIGTGYGAAVSALRLGEA-GVQTLMLEMGQLWNQPGPDGNIFCGMLNPDKRSSWFK 64
Query: 82 --------RQDWAYRTQPDNRMFFGLENRVNH----WPRGKGLGGFPATGLIYSN 124
W + + G+ +RVN+ G+G+GG L+
Sbjct: 65 NRTEAPLGSFLWLDVVNRNIDPYAGVLDRVNYDQMSVYVGRGVGG---GSLVNGG 116
>1coy_A Cholesterol oxidase; oxidoreductase(oxygen receptor); HET: AND FAD;
1.80A {Brevibacterium sterolicum} SCOP: c.3.1.2 d.16.1.1
PDB: 3cox_A*
Length = 507
Score = 52.1 bits (124), Expect = 8e-09
Identities = 20/103 (19%), Positives = 35/103 (33%), Gaps = 6/103 (5%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG----DPPEASELPGYWFNLLKSRQD 84
+ +++G G GAV A RL++ ++E G + G +S
Sbjct: 11 RVPALVIGSGYGGAVAALRLTQA-GIPTQIVEMGRSWDTPGSDGKIFCGMLNPDKRSMWL 69
Query: 85 WAYRTQP-DNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNHV 126
QP N M FG+ ++ + F + V
Sbjct: 70 ADKTDQPVSNFMGFGINKSIDRYVGVLDSERFSGIKVYQGRGV 112
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 51.3 bits (122), Expect = 1e-08
Identities = 14/32 (43%), Positives = 22/32 (68%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
+FD +VG G G +A R++ +LD RVL++E
Sbjct: 7 RFDLFVVGSGFFGLTIAERVATQLDKRVLVLE 38
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 47.8 bits (113), Expect = 2e-07
Identities = 19/42 (45%), Positives = 27/42 (64%), Gaps = 1/42 (2%)
Query: 20 STAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
+T E S FD++IVG G AG+VLA RL+ RVL+++
Sbjct: 20 TTNEQQESKGFDYLIVGAGFAGSVLAERLA-SSGQRVLIVDR 60
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant, homotetramer,
GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 47.5 bits (112), Expect = 3e-07
Identities = 15/98 (15%), Positives = 31/98 (31%), Gaps = 4/98 (4%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWF-NLLKSRQDWAY 87
K+D +IVG G G A L ++V + + G ++ G N ++ +++
Sbjct: 46 KYDVVIVGSGPIGCTYARELVGA-GYKVAMFDIG--EIDSGLKIGAHKKNTVEYQKNIDK 102
Query: 88 RTQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIYSNH 125
+ VN + +
Sbjct: 103 FVNVIQGQLMSVSVPVNTLVVDTLSPTSWQASTFFVRN 140
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 45.0 bits (106), Expect = 2e-06
Identities = 11/33 (33%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
+IVG G +GAV+ +L+ E +V +I+
Sbjct: 3 SKKILIVGAGFSGAVIGRQLA-EKGHQVHIIDQ 34
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 44.9 bits (105), Expect = 2e-06
Identities = 14/114 (12%), Positives = 30/114 (26%), Gaps = 32/114 (28%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA----GG--------------------- 63
D +++G G G A RL++ +++++ GG
Sbjct: 10 SVDVLVIGAGPTGLGAAKRLNQIDGPSWMIVDSNETPGGLASTDVTPEGFLYDVGGHVIF 69
Query: 64 -DPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFP 116
+ L DW + + + +P + P
Sbjct: 70 SHYKYFDD---CLDEALPKEDDWYTHQ---RISYVRCQGQWVPYPFQNNISMLP 117
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 44.2 bits (105), Expect = 4e-06
Identities = 10/38 (26%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66
+D ++VGGG G+ A ++ + L+IE +
Sbjct: 4 TYDVLVVGGGPGGSTAARYAAKY-GLKTLMIEKRPEIG 40
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 43.5 bits (102), Expect = 5e-06
Identities = 17/32 (53%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
+D+IIVG G GAV AN L +L+ +VL+IE
Sbjct: 2 YDYIIVGSGLFGAVCANELK-KLNKKVLVIEK 32
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase
type II family, thiazole synthase, mitochondria DNA
repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} SCOP:
c.3.1.6 PDB: 3fpz_A*
Length = 326
Score = 42.9 bits (100), Expect = 1e-05
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 30 FDFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGGDPPEASELPGYWFN 77
D IIVG GS+G A +++ D +V +IE+ P S L G F+
Sbjct: 66 SDVIIVGAGSSGLSAAYVIAKNRPDLKVCIIESSVAPGGGSWLGGQLFS 114
>3c4n_A Uncharacterized protein DR_0571; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; HET: ADP;
2.40A {Deinococcus radiodurans R1}
Length = 405
Score = 42.0 bits (97), Expect = 2e-05
Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 3/75 (4%)
Query: 29 KFDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDPPE--ASELPGYWFNLLKSRQDW 85
FD +++G G GA A L + +LL+E GG P E A+ L +
Sbjct: 36 AFDIVVIGAGRMGAACAFYLRQLAPGRSLLLVEEGGLPNEEGATILAPGVWTAQDIPAGQ 95
Query: 86 AYRTQPDNRMFFGLE 100
+ + G
Sbjct: 96 EAQAEWTREQLLGAL 110
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 41.3 bits (97), Expect = 3e-05
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
K+D +I+GGG AG+ A +LS ++LL+++
Sbjct: 6 KYDVLIIGGGFAGSSAAYQLSRR-GLKILLVDSKPWN 41
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex,
biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis
thaliana} SCOP: c.3.1.6
Length = 284
Score = 40.1 bits (93), Expect = 8e-05
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFN 77
D ++VG GSAG A +S+ + +V +IE P + L G F+
Sbjct: 40 TDVVVVGAGSAGLSAAYEISKNPNVQVAIIEQSVSPGGGAWLGGQLFS 87
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD;
1.75A {Pseudomonas aeruginosa}
Length = 399
Score = 39.2 bits (92), Expect = 2e-04
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
D +I G G GA+LA L RV+++E +
Sbjct: 7 IDVLINGCGIGGAMLAYLLG-RQGHRVVVVEQARRERAIN 45
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES
protein structure initiative, northeast structural
genomics consortium; HET: FAD; 2.60A {Cytophaga
hutchinsonii}
Length = 421
Score = 38.6 bits (90), Expect = 3e-04
Identities = 11/37 (29%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
K D +++G G AG V A+ +++ ++V ++E P
Sbjct: 5 KVDVLVIGAGPAGTVAASLVNKS-GFKVKIVEKQKFP 40
>4dsg_A UDP-galactopyranose mutase; rossmann fold, flavin adenine
dinucleotide, isomerase; HET: FAD UDP; 2.25A
{Trypanosoma cruzi} PDB: 4dsh_A*
Length = 484
Score = 37.9 bits (87), Expect = 5e-04
Identities = 12/39 (30%), Positives = 15/39 (38%), Gaps = 4/39 (10%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA----GG 63
+I+G G G A RL+E L E GG
Sbjct: 9 TPKIVIIGAGPTGLGAAVRLTELGYKNWHLYECNDTPGG 47
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein;
HET: AHZ; 2.70A {Neurospora crassa}
Length = 344
Score = 37.8 bits (87), Expect = 6e-04
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 30 FDFIIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDW 85
D +IVG GS G A LS D R+ ++EAG P + L G F+ + R+
Sbjct: 80 TDIVIVGAGSCGLSAAYVLSTLRPDLRITIVEAGVAPGGGAWLGGQLFSAMVMRKPA 136
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Length = 512
Score = 37.2 bits (86), Expect = 8e-04
Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
FD I++GGG G+ LA+ ++ RVLL+E P
Sbjct: 7 VFDLIVIGGGPGGSTLASFVAMR-GHRVLLLEREAFP 42
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD;
1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Length = 448
Score = 36.7 bits (85), Expect = 0.001
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
+FD+++VG G G A L VL+++AG
Sbjct: 23 RFDYVVVGAGVVGLAAAYYLKVWSGGSVLVVDAG 56
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
oxidor; HET: FAD KPC; 1.65A {Xanthobacter
autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Length = 523
Score = 36.1 bits (84), Expect = 0.002
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 17 TVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
V+ ++N ++D I +GGG+AG + L + R L+++
Sbjct: 31 EVIYNVDENDPREYDAIFIGGGAAGRFGSAYLR-AMGGRQLIVDRWP 76
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
K+D II+G GS GA + VL+ +A PP
Sbjct: 2 KYDLIIIGSGSVGAAAGYYAT-RAGLNVLMTDA-HMPPHQH 40
>1fcd_A Flavocytochrome C sulfide dehydrogenase (flavin- binding
subunit); electron transport(flavocytochrome); HET: FAD
HEM; 2.53A {Allochromatium vinosum} SCOP: c.3.1.5
c.3.1.5 d.87.1.1
Length = 401
Score = 35.9 bits (83), Expect = 0.002
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 1/30 (3%)
Query: 33 IIVGGGSAGAVLANRLSEEL-DWRVLLIEA 61
++VGGG+ GA A + V LIE
Sbjct: 6 VVVGGGTGGATAAKYIKLADPSIEVTLIEP 35
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium
gracile} PDB: 2rab_A*
Length = 463
Score = 35.9 bits (84), Expect = 0.002
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
FD I +GGGS G +A + + RV LIE+
Sbjct: 5 FDLIAIGGGSGGLAVAEKAA-AFGKRVALIESKA 37
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol
biosynthesis, halogenation reaction, structural
genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Length = 591
Score = 35.7 bits (82), Expect = 0.003
Identities = 11/37 (29%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
+ I+GGG AG+V L + V + E P
Sbjct: 23 RSKVAIIGGGPAGSVAGLTLHKL-GHDVTIYERSAFP 58
>3gwf_A Cyclohexanone monooxygenase; flavoprotein biocatalysis
baeyer-villiger oxidation green CH monooxygenase,
oxidoreductase; HET: FAD NAP; 2.20A {Rhodococcus SP}
PDB: 3gwd_A* 3ucl_A*
Length = 540
Score = 35.6 bits (83), Expect = 0.003
Identities = 7/36 (19%), Positives = 14/36 (38%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64
D +++G G G ++L EL + +
Sbjct: 8 TVDAVVIGAGFGGIYAVHKLHHELGLTTVGFDKADG 43
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 35.2 bits (81), Expect = 0.004
Identities = 21/84 (25%), Positives = 31/84 (36%), Gaps = 22/84 (26%)
Query: 4 MSSLLLTLISTVFTVVS---TAEDNI--------SGKFDFIIVGG-------GSAGAVLA 45
++ LL++ + T V T+ +++ SGK IVGG GS
Sbjct: 1088 VNMLLISSSGPIKTPVGACATSVESVDIGVETILSGKARICIVGGYDDFQEEGSFEFGNM 1147
Query: 46 NRLSEELDWRVLLIEAGGDPPEAS 69
S L+ E G P E S
Sbjct: 1148 KATSNTLE----EFEHGRTPAEMS 1167
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical
bundle, sandwiched sheets, structural genomics; HET:
TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A*
2ar8_A* 2ard_A* 2jkc_A*
Length = 538
Score = 35.1 bits (79), Expect = 0.005
Identities = 14/37 (37%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 33 IIVGGGSAGAVLANRLSEEL--DWRVLLIEAGGDPPE 67
+IVGGG+AG + A+ L L + LIE+ P
Sbjct: 9 VIVGGGTAGWMAASYLVRALQQQANITLIESAAIPRI 45
>1yvv_A Amine oxidase, flavin-containing; oxidoreductase, PSR10, Q888A4,
X-RAY, structure, PSI, protein structure initiative;
HET: FAD; 2.50A {Pseudomonas syringae} PDB: 3kkj_A*
Length = 336
Score = 35.0 bits (79), Expect = 0.005
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 1/37 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
I+G G AG A L+ +V L +
Sbjct: 2 TVPIAIIGTGIAGLSAAQALTAA-GHQVHLFDKSRGS 37
>1onf_A GR, grase, glutathione reductase; oxidoreductase; HET: FAD; 2.60A
{Plasmodium falciparum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 500
Score = 34.9 bits (81), Expect = 0.006
Identities = 12/34 (35%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
+D I++GGGS G A R + + +V L+E
Sbjct: 3 YDLIVIGGGSGGMAAARRAA-RHNAKVALVEKSR 35
>1zk7_A HGII, reductase, mercuric reductase; mercuric ION reductase,
oxidoreductase; HET: FAD; 1.60A {Pseudomonas
aeruginosa} PDB: 1zx9_A*
Length = 467
Score = 34.8 bits (81), Expect = 0.007
Identities = 10/37 (27%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
+ ++G G A A + E +V LIE G
Sbjct: 1 MEPPVQVAVIGSGGAAMAAALKAV-EQGAQVTLIERG 36
>3qfa_A Thioredoxin reductase 1, cytoplasmic; protein-protein complex,
rossmann fold, HO pyridine nucleotide disulfide
oxidoreductase, electron TRAN oxidoreductase; HET: FAD;
2.20A {Homo sapiens} PDB: 3qfb_A* 2j3n_A* 2zzc_A*
2zzb_A* 2zz0_A* 2cfy_A* 1h6v_A* 3ean_A* 3eao_A*
Length = 519
Score = 34.5 bits (80), Expect = 0.007
Identities = 13/61 (21%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Query: 10 TLISTVFTVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
L+ + + S +D II+GGGS G A + + +V++++ P +
Sbjct: 13 GLVPRGSHMNGPEDLPKSYDYDLIIIGGGSGGLAAAKEAA-QYGKKVMVLDFVTPTPLGT 71
Query: 70 E 70
Sbjct: 72 R 72
>3dgz_A Thioredoxin reductase 2; oxidoreductase, rossmann, flavoprotein,
FAD, mitochondrion, redox-active center, selenium,
selenocysteine, transit PEPT; HET: FAD NA7; 2.25A {Mus
musculus} PDB: 1zkq_A* 1zdl_A*
Length = 488
Score = 34.4 bits (80), Expect = 0.007
Identities = 11/42 (26%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASE 70
FD +++GGGS G A + +L +V + + P ++
Sbjct: 6 SFDLLVIGGGSGGLACAKEAA-QLGKKVAVADYVEPSPRGTK 46
>3dk9_A Grase, GR, glutathione reductase; flavoenzyme, nicotinamide,
acetylation, alternative initiation, cytoplasm, FAD,
flavoprotein, mitochondrion, NADP; HET: SO4 FAD; 0.95A
{Homo sapiens} PDB: 1bwc_A* 1gra_A* 1gre_A* 1grf_A*
1grh_A* 1grb_A* 2gh5_A* 1gsn_A* 3dk4_A* 3dk8_A* 3djj_A*
3grs_A* 3sqp_A* 4gr1_A* 2aaq_A* 1dnc_A* 1grg_A* 1grt_A*
1xan_A* 5grt_A* ...
Length = 478
Score = 34.4 bits (80), Expect = 0.007
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 23 EDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
+D++++GGGS G A R + EL R ++E+
Sbjct: 14 AAGAVASYDYLVIGGGSGGLASARRAA-ELGARAAVVESHK 53
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis,
biosynthetic protein, flavoprotein; HET: TRP; 2.08A
{Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A*
2oal_A* 2oam_A
Length = 550
Score = 34.4 bits (77), Expect = 0.008
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 33 IIVGGGSAGAVLANRLSEEL--DWRVLLIEAGGDPPE 67
+IVGGG+AG + A+ L + L + L++A P
Sbjct: 29 LIVGGGTAGWMAASYLGKALQGTADITLLQAPDIPTL 65
>2hqm_A GR, grase, glutathione reductase; glutathione reductase complexed
with FAD, oxidoreductase; HET: NAG FAD GSH; 2.40A
{Saccharomyces cerevisiae}
Length = 479
Score = 34.4 bits (80), Expect = 0.008
Identities = 12/35 (34%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
+D++++GGGS G A R + + LL+EA
Sbjct: 11 HYDYLVIGGGSGGVASARRAA-SYGAKTLLVEAKA 44
>2wpf_A Trypanothione reductase; oxidoreductase, trypanosomiasis,
sleeping sickness, flavoPro redox-active center; HET:
FAD WPF; 1.90A {Trypanosoma brucei} PDB: 2wov_A*
2wow_A* 2wp5_A* 2wp6_A* 2wpc_A* 2wpe_A* 2woi_A* 2wba_A*
1nda_A* 1gxf_A* 1bzl_A* 1aog_A*
Length = 495
Score = 34.5 bits (80), Expect = 0.008
Identities = 9/46 (19%), Positives = 18/46 (39%)
Query: 24 DNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
++S FD +++G GS G + RV +++
Sbjct: 2 SHMSKAFDLVVIGAGSGGLEAGWNAATLYGKRVAVVDVQTSHGPPF 47
>4dna_A Probable glutathione reductase; structural genomics, protein
structure initiative, NEW YORK structural genomix
research consortium; HET: FAD; 2.80A {Sinorhizobium
meliloti}
Length = 463
Score = 34.4 bits (80), Expect = 0.008
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
+D ++GGGS G + L +V + E
Sbjct: 6 YDLFVIGGGSGGVRSGRLAA-ALGKKVAIAEEFR 38
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis,
FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Length = 540
Score = 34.2 bits (79), Expect = 0.009
Identities = 14/41 (34%), Positives = 25/41 (60%), Gaps = 3/41 (7%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
D +I+G G+AG LA RL+++ +V+++ + G E S
Sbjct: 8 SCDVLIIGSGAAGLSLALRLADQH--QVIVL-SKGPVTEGS 45
>3sx6_A Sulfide-quinone reductase, putative; sulfide:quinone
oxidoreductase, Cys356Ala variant, integral membrane
protein; HET: FAD LMT DCQ; 1.80A {Acidithiobacillus
ferrooxidans} PDB: 3t0k_A* 3szc_A* 3sz0_A* 3t2z_A*
3t31_A* 3sy4_A* 3syi_A* 3sxi_A* 3t14_A* 3t2k_A* 3szw_A*
3szf_A* 3kpg_A* 3kpi_A* 3t2y_A* 3kpk_A*
Length = 437
Score = 34.3 bits (79), Expect = 0.009
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 33 IIVGGGSAGAVLANRLSEEL--DWRVLLIE 60
+I+G G+ G A + E L V LI
Sbjct: 8 VILGAGTGGMPAAYEMKEALGSGHEVTLIS 37
>2x8g_A Thioredoxin glutathione reductase; redox-active center,
detoxification pathway, oxidoreductase, flavoprotein;
HET: FAD PG4; 1.90A {Schistosoma mansoni} PDB: 2x8c_A*
2x8h_A* 2x99_A* 3h4k_A* 2v6o_A*
Length = 598
Score = 34.2 bits (79), Expect = 0.011
Identities = 8/41 (19%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASE 70
+D I++GGGS G + + + +++ P +
Sbjct: 108 YDLIVIGGGSGGLAAGKEAA-KYGAKTAVLDYVEPTPIGTT 147
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei;
HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A*
2wes_A*
Length = 511
Score = 33.9 bits (76), Expect = 0.011
Identities = 15/73 (20%), Positives = 25/73 (34%), Gaps = 6/73 (8%)
Query: 33 IIVGGGSAGAVLANRLSEEL--DWRVLLIEAGGDPPEASELPG----YWFNLLKSRQDWA 86
+IVGGG+AG + A+ L V L+E+G F +
Sbjct: 6 VIVGGGTAGWMTASYLKAAFDDRIDVTLVESGNVRRIGVGEATFSTVRHFFDYLGLDERE 65
Query: 87 YRTQPDNRMFFGL 99
+ + G+
Sbjct: 66 WLPRCAGGYKLGI 78
>2b9w_A Putative aminooxidase; isomerase, conjugated linoleic acid, FAD;
HET: FAD 12P; 1.95A {Propionibacterium acnes} PDB:
2b9x_A* 2b9y_A* 2ba9_A* 2bab_A* 2bac_A*
Length = 424
Score = 33.7 bits (77), Expect = 0.013
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 4/37 (10%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEA----GG 63
I+G G AG L + ++E GG
Sbjct: 8 RIAIIGAGPAGLAAGMYLEQAGFHDYTILERTDHVGG 44
>1ges_A Glutathione reductase; oxidoreductase(flavoenzyme); HET: FAD;
1.74A {Escherichia coli} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1geu_A* 1ger_A* 1get_A*
Length = 450
Score = 33.6 bits (78), Expect = 0.014
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
+D+I +GGGS G NR + + LIEA
Sbjct: 5 YDYIAIGGGSGGIASINRAA-MYGQKCALIEAKE 37
>3h28_A Sulfide-quinone reductase; monotopic membrane protein,
flavoprotein, polysulfur, oxidoreductase; HET: FAD DCQ
LMT; 2.00A {Aquifex aeolicus} PDB: 3h27_A* 3h29_A*
3hyv_A* 3hyw_A* 3hyx_A*
Length = 430
Score = 33.5 bits (77), Expect = 0.015
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 33 IIVGGGSAGAVLANRLSEEL-DWRVLLIE 60
+++GGG G A L + D ++ LI
Sbjct: 6 VVIGGGVGGIATAYNLRNLMPDLKITLIS 34
>1fec_A Trypanothione reductase; redox-active center, oxidoreductase,
flavoprotein, FAD, NADP; HET: FAD; 1.70A {Crithidia
fasciculata} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1fea_A* 1feb_A* 2tpr_A* 1tyt_A* 1typ_A* 2jk6_A* 2w0h_A*
2yau_A* 2x50_A* 2ve2_A*
Length = 490
Score = 33.3 bits (77), Expect = 0.018
Identities = 8/41 (19%), Positives = 15/41 (36%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
+D +++G GS G + RV +I+
Sbjct: 3 AYDLVVIGAGSGGLEAGWNAASLHKKRVAVIDLQKHHGPPH 43
>2gmh_A Electron transfer flavoprotein-ubiquinone oxidoreductase; HET:
BHG FAD UQ5; 2.50A {Sus scrofa} SCOP: c.3.1.2 d.16.1.8
d.58.1.6 PDB: 2gmj_A*
Length = 584
Score = 33.2 bits (76), Expect = 0.019
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 30 FDFIIVGGGSAGAVLANRL-----SEELDWRVLLIEAGGDP 65
D +IVG G AG A RL E D RV L+E
Sbjct: 36 ADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHI 76
>3dgh_A TRXR-1, thioredoxin reductase 1, mitochondrial; oxidoreductase,
rossmann, flavoprotein, alternative initiati
mitochondrion, NADP; HET: FAD; 1.75A {Drosophila
melanogaster} PDB: 2nvk_X* 3dh9_A*
Length = 483
Score = 33.3 bits (77), Expect = 0.020
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 1/49 (2%)
Query: 22 AEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASE 70
A S +D I++GGGSAG A RV ++ P
Sbjct: 2 APVQGSYDYDLIVIGGGSAGLACAKEAV-LNGARVACLDFVKPTPTLGT 49
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET:
FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A*
2q6u_A*
Length = 397
Score = 33.2 bits (76), Expect = 0.021
Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
+D ++VGGG G A +++ E RVL++E E
Sbjct: 4 SYDVVVVGGGPVGLATAWQVA-ERGHRVLVLERHTFFNENG 43
>1s3e_A Amine oxidase [flavin-containing] B; human monoamine oxidase,
inhibitor binding, rasagiline, enantioselectivity,
oxidoreductase; HET: FAD RHP; 1.60A {Homo sapiens}
SCOP: c.3.1.2 d.16.1.5 PDB: 1gos_A* 1oj9_A* 1ojb_A*
1ojc_A* 1ojd_A* 1s2q_A* 1s2y_A* 1oja_A* 1s3b_A* 2bk3_A*
2byb_A* 2c64_A* 2c65_A* 2c66_A* 2c67_A* 2c70_A* 2v5z_A*
2v60_A* 2v61_A* 2vrl_A* ...
Length = 520
Score = 33.3 bits (76), Expect = 0.022
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
+S K D ++VGGG +G A L + V+++EA
Sbjct: 1 MSNKCDVVVVGGGISGMAAAKLLH-DSGLNVVVLEA 35
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT
structure initiative, northeast structural genomics
consort NESG; HET: FAD TLA; 1.70A {Bordetella
pertussis}
Length = 369
Score = 32.9 bits (76), Expect = 0.023
Identities = 12/39 (30%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
S D I++G G G +A L+ VL+ EA
Sbjct: 2 STDIDCIVIGAGVVGLAIARALAAG-GHEVLVAEAAEGI 39
>3o0h_A Glutathione reductase; ssgcid, structur genomics, seattle
structural genomics center for infectious gluathione
reductase, oxidoreductase; HET: FAD; 1.90A {Bartonella
henselae}
Length = 484
Score = 32.9 bits (76), Expect = 0.024
Identities = 11/34 (32%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
FD ++G GS G A L RV + E
Sbjct: 27 FDLFVIGSGSGGVRAARLAG-ALGKRVAIAEEYR 59
>1m6i_A Programmed cell death protein 8; apoptosis, AIF, oxidoreductase;
HET: FAD; 1.80A {Homo sapiens} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 3gd3_A* 3gd4_A* 1gv4_A*
Length = 493
Score = 32.8 bits (75), Expect = 0.028
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 23 EDNISGKFDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGGDPP 66
+D F+++GGG+A A + D RVL++ + P
Sbjct: 5 QDKAPSHVPFLLIGGGTAAFAAARSIRAR-DPGARVLIVSEDPELP 49
>3k7m_X 6-hydroxy-L-nicotine oxidase; enantiomeric substrates,
flavoenzymes, nicotine degradation, oxidoreductase;
HET: FAD GP7; 1.95A {Arthrobacter nicotinovorans} PDB:
3k7q_X* 3ng7_X* 3ngc_X* 3nh3_X* 3nho_X* 3nk0_X* 3nk1_X*
3nk2_X* 3nn0_X* 3nn6_X* 3k7t_A*
Length = 431
Score = 32.9 bits (75), Expect = 0.030
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLLIEA----GG--DPPEASELPGYWFNL 78
+D I+VGGG +G A L+ +VLL+E GG E+ +PG +
Sbjct: 2 YDAIVVGGGFSGLKAARDLTNA-GKKVLLLEGGERLGGRAYSRESRNVPGLRVEI 55
>3qj4_A Renalase; FAD/NAD(P)-binding rossmann fold superfamily, flavin
contain oxidoreductase, monoamine oxidase, NAD,
extracellular, oxidoreductase; HET: FAD; 2.50A {Homo
sapiens}
Length = 342
Score = 32.4 bits (72), Expect = 0.035
Identities = 8/37 (21%), Positives = 15/37 (40%), Gaps = 2/37 (5%)
Query: 31 DFIIVGGGSAGAVLANRLSEEL--DWRVLLIEAGGDP 65
+IVG G G++ A L + + + + D
Sbjct: 3 QVLIVGAGMTGSLCAALLRRQTSGPLYLAVWDKADDS 39
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A
{Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4
d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Length = 643
Score = 32.5 bits (74), Expect = 0.035
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 3/35 (8%)
Query: 29 KFDFIIVGGGSAG---AVLANRLSEELDWRVLLIE 60
+ D +I+GGG +G A A ++ +V L+E
Sbjct: 22 ETDILIIGGGFSGCGAAYEAAYWAKLGGLKVTLVE 56
>1w4x_A Phenylacetone monooxygenase; baeyer-villiger, FAD; HET: FAD; 1.7A
{Thermobifida fusca} SCOP: c.3.1.5 c.3.1.5 PDB: 2ylr_A*
2yls_A* 2ylt_A* 2ym1_A* 2ylw_A* 2ym2_A* 2ylx_A* 2ylz_A*
Length = 542
Score = 32.5 bits (75), Expect = 0.035
Identities = 14/44 (31%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 21 TAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64
+ + D ++VG G +G RL EL V +IE GD
Sbjct: 8 DSRRQPPEEVDVLVVGAGFSGLYALYRLR-ELGRSVHVIETAGD 50
>1sez_A Protoporphyrinogen oxidase, mitochondrial; FAD-binding,
para-hydroxy-benzoate-hydroxylase fold (PHBH- fold),
monotopic membrane-binding domain; HET: FAD OMN TON;
2.90A {Nicotiana tabacum} SCOP: c.3.1.2 d.16.1.5
Length = 504
Score = 32.4 bits (73), Expect = 0.041
Identities = 13/44 (29%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 20 STAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
S ED S ++G G +G A +L V + EA G
Sbjct: 4 SAGEDKHSSAKRVAVIGAGVSGLAAAYKLKIH-GLNVTVFEAEG 46
>2gf3_A MSOX, monomeric sarcosine oxidase; flavoprotein oxidase,
inhibitor 2-furoic acid, oxidoreductas; HET: FAD; 1.30A
{Bacillus SP} SCOP: c.3.1.2 d.16.1.3 PDB: 1el7_A*
1el8_A* 1el9_A* 1eli_A* 1l9e_A* 2a89_A* 2gb0_A* 1el5_A*
3qse_A* 3qsm_A* 3qss_A* 3bhk_A* 3bhf_A* 3m12_A* 3m13_A*
3m0o_A* 1l9c_A* 1l9d_A* 1zov_A*
Length = 389
Score = 32.3 bits (74), Expect = 0.042
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
S FD I+VG GS G +L+ + + LL++A
Sbjct: 1 STHFDVIVVGAGSMGMAAGYQLA-KQGVKTLLVDAFD 36
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural
genomics, JCSG, protein structure initiative
biosynthetic protein; HET: MSE TLA PG4; 1.50A
{Shewanella frigidimarina}
Length = 526
Score = 32.4 bits (72), Expect = 0.047
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 11/46 (23%)
Query: 33 IIVGGGSAGAVLANRLSEEL-----------DWRVLLIEAGGDPPE 67
IIVGGG+AG + A L+ E + LIE+
Sbjct: 11 IIVGGGTAGWITAGLLAAEHNVDKGVLAHSPKLNITLIESPDVATI 56
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas;
HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB:
3nye_A* 3nyf_A* 3sm8_A*
Length = 381
Score = 32.2 bits (74), Expect = 0.048
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
+ D++++G G AGA LS V+++E P
Sbjct: 9 EADYLVIGAGIAGASTGYWLSAHGR--VVVLEREAQP 43
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating
complex, structural GEN PSI-2-2, protein structure
initiative; HET: AMP; 3.45A {Thermotoga maritima}
Length = 218
Score = 31.8 bits (73), Expect = 0.050
Identities = 8/28 (28%), Positives = 14/28 (50%), Gaps = 1/28 (3%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIE 60
II+GG + LA + + V++I
Sbjct: 4 IIIGGETTAYYLARSMLSR-KYGVVIIN 30
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 31.8 bits (73), Expect = 0.057
Identities = 23/78 (29%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 32 FIIVGGGSAGAVLAN---RLSEELDWRVLLIEAGGDPPEAS-ELPGYWFNLLKSRQDWAY 87
++VGG + GA +A RLSE + ++++E G A+ LP Y ++ RQ
Sbjct: 39 IVVVGGVAGGASVAARLRRLSE--EDEIIMVERGEYISFANCGLPYYIGGVITERQKLLV 96
Query: 88 RTQPDNRMFFGLENRVNH 105
+T F L+ RV
Sbjct: 97 QTVERMSKRFNLDIRVLS 114
>3h8l_A NADH oxidase; membrane protein, complete form, rossman-like fold,
oxidoreductase; HET: FAD; 2.57A {Acidianus ambivalens}
PDB: 3h8i_A*
Length = 409
Score = 31.6 bits (72), Expect = 0.065
Identities = 6/30 (20%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 33 IIVGGGSAGAVLANRLSEEL--DWRVLLIE 60
+++GG A L + V +I
Sbjct: 5 LVLGGRFGALTAAYTLKRLVGSKADVKVIN 34
>4ap3_A Steroid monooxygenase; oxidoreductase, baeyer-villiger; HET: FAD
NAP; 2.39A {Rhodococcus rhodochrous} PDB: 4aox_A*
4aos_A* 4ap1_A*
Length = 549
Score = 31.8 bits (73), Expect = 0.067
Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 17 TVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64
V + + +D ++VG G AG +R V EA
Sbjct: 9 VVTAPDATTGTTSYDVVVVGAGIAGLYAIHRFR-SQGLTVRAFEAASG 55
>3uox_A Otemo; baeyer-villiger monooxygenase, oxidoreductase; HET: FAD;
1.96A {Pseudomonas putida} PDB: 3uov_A* 3uoy_A* 3uoz_A*
3up4_A* 3up5_A*
Length = 545
Score = 31.8 bits (73), Expect = 0.070
Identities = 12/36 (33%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64
D +++G G G A + + +VL IEAG D
Sbjct: 9 ALDAVVIGAGVTGIYQAFLI-NQAGMKVLGIEAGED 43
>2dkh_A 3-hydroxybenzoate hydroxylase; flavoprotein, monooxygenase,
complex, oxidoreductase; HET: FAD 3HB; 1.80A {Comamonas
testosteroni} PDB: 2dki_A*
Length = 639
Score = 31.4 bits (71), Expect = 0.080
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
+ D +IVG G AG LA +L+ D R ++E P E
Sbjct: 32 QVDVLIVGCGPAGLTLAAQLAAFPDIRTCIVEQKEGPMELG 72
>3kd9_A Coenzyme A disulfide reductase; PSI-II, NYSGXRC, oxidoreductase,
structural genomics structure initiative; 2.75A
{Pyrococcus horikoshii}
Length = 449
Score = 31.3 bits (72), Expect = 0.082
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 7/77 (9%)
Query: 33 IIVGGGSAGAVLAN---RLSEELDWRVLLIEAGGDPPEAS-ELPGYWFNLLKSRQDWAYR 88
+I+GGG+AG A+ RL +W V + EA A +P Y L + Y
Sbjct: 7 VIIGGGAAGMSAASRVKRLKP--EWDVKVFEATEWVSHAPCGIP-YVVEGLSTPDKLMYY 63
Query: 89 TQPDNRMFFGLENRVNH 105
G++ +N
Sbjct: 64 PPEVFIKKRGIDLHLNA 80
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 31.4 bits (70), Expect = 0.084
Identities = 8/30 (26%), Positives = 16/30 (53%)
Query: 22 AEDNISGKFDFIIVGGGSAGAVLANRLSEE 51
++ I +D I++G G +L+ LS +
Sbjct: 4 DQETIDTDYDVIVLGTGITECILSGLLSVD 33
>1pn0_A Phenol 2-monooxygenase; two dimers, TLS refinement,
oxidoreductase; HET: FAD; 1.70A {Trichosporon cutaneum}
SCOP: c.3.1.2 c.47.1.10 d.16.1.2 PDB: 1foh_A*
Length = 665
Score = 31.5 bits (71), Expect = 0.085
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 4/45 (8%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWR----VLLIEAGGDPPEAS 69
D +IVG G AG + A LSE + + V +I+
Sbjct: 8 YCDVLIVGAGPAGLMAARVLSEYVRQKPDLKVRIIDKRSTKVYNG 52
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 31.1 bits (71), Expect = 0.095
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWR-VLLIEAG 62
+D IIVGGG G A L++ V ++E G
Sbjct: 21 SYDAIIVGGGGHGLATAYFLAKNHGITNVAVLEKG 55
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 31.4 bits (70), Expect = 0.096
Identities = 9/33 (27%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
+D II+G G +L+ LS ++L+++
Sbjct: 20 HYDVIILGTGLKECILSGLLSHY-GKKILVLDR 51
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 31.0 bits (69), Expect = 0.11
Identities = 10/78 (12%), Positives = 27/78 (34%), Gaps = 7/78 (8%)
Query: 25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQD 84
++ ++D I++G G +L+ +S +VL ++ G ++ +
Sbjct: 2 HMDEEYDVIVLGTGLTECILSGIMSVN-GKKVLHMDRNPYY------GGESSSITPLEEL 54
Query: 85 WAYRTQPDNRMFFGLENR 102
+ + R
Sbjct: 55 YKRFQLLEGPPETMGRGR 72
>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center
for structural genomics, J protein structure
initiative, PSI-2; HET: AMP; 1.50A {Thermotoga
maritima} PDB: 3l4b_A*
Length = 155
Score = 30.3 bits (69), Expect = 0.13
Identities = 8/28 (28%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIE 60
+I G G G+++AN S V++++
Sbjct: 23 VIFGCGRLGSLIANLASSS-GHSVVVVD 49
>2xag_A Lysine-specific histone demethylase 1; amine oxidase, chromatin
regulator, histone inhibitor binding, methylation,
nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A
{Homo sapiens} PDB: 2xaf_A* 2xah_A* 2xaj_A* 2xaq_A*
2xas_A* 2com_A
Length = 852
Score = 31.1 bits (69), Expect = 0.13
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
II+G G +G A +L V L+EA
Sbjct: 278 TGKVIIIGSGVSGLAAARQLQ-SFGMDVTLLEA 309
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 30.8 bits (70), Expect = 0.15
Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
D ++VG G AG A ++ +V+LIE
Sbjct: 126 TVDVVVVGSGGAGFSAAISATDS-GAKVILIE 156
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR
initiative, midwest center for structural genomics;
HET: FAD; 2.15A {Agrobacterium tumefaciens}
Length = 297
Score = 30.6 bits (70), Expect = 0.15
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 13/41 (31%)
Query: 29 KFDFIIVGGGSAG--AVL----ANRLSEELDWRVLLIEAGG 63
KFD II+GG AG A L A + +LL++AG
Sbjct: 2 KFDVIIIGGSYAGLSAALQLGRARK-------NILLVDAGE 35
>2yg5_A Putrescine oxidase; oxidoreductase, flavin; HET: FAD; 1.90A
{Rhodococcus erythropolis} PDB: 2yg6_A* 2yg3_A* 2yg4_A*
2yg7_A* 3rha_A*
Length = 453
Score = 30.5 bits (69), Expect = 0.15
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 5/41 (12%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA----GG 63
+ + D IVG G +G A L + V +IEA GG
Sbjct: 3 TLQRDVAIVGAGPSGLAAATALRKA-GLSVAVIEARDRVGG 42
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 30.3 bits (69), Expect = 0.19
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 6/77 (7%)
Query: 33 IIVGGGSAGAVLAN---RLSEELDWRVLLIEAGGDPPEAS-ELPGYWFNLLKSRQDWAYR 88
+I+GG + GA A RLSE +++ E G A+ LP + + R +
Sbjct: 5 LIIGGVAGGASAAARARRLSE--TAEIIMFERGEYVSFANCGLPYHISGEIAQRSALVLQ 62
Query: 89 TQPDNRMFFGLENRVNH 105
T + F +E RV H
Sbjct: 63 TPESFKARFNVEVRVKH 79
>2jae_A L-amino acid oxidase; oxidoreductase, dimerisation mode, hydride
transfer mechanism, GR2-family, flavoenzyme, FAD
containing; HET: FAD; 1.25A {Rhodococcus opacus} PDB:
2jb1_A* 2jb2_A* 2jb3_A*
Length = 489
Score = 30.2 bits (68), Expect = 0.19
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 5/43 (11%)
Query: 25 NISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA----GG 63
+ G +++GGG AG A L + ++V ++EA GG
Sbjct: 7 KVKGSHSVVVLGGGPAGLCSAFELQ-KAGYKVTVLEARTRPGG 48
>3nks_A Protoporphyrinogen oxidase; FAD containing protein, PPO,
variegate porphyria disease, VP
oxidoreductase-oxidoreductase inhibitor complex; HET:
ACJ FAD; 1.90A {Homo sapiens}
Length = 477
Score = 30.4 bits (68), Expect = 0.19
Identities = 9/32 (28%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
Query: 33 IIVGGGSAGAVLANRLSEE-LDWRVLLIEAGG 63
+++GGG +G + LS +V+L+E+
Sbjct: 6 VVLGGGISGLAASYHLSRAPCPPKVVLVESSE 37
>4g65_A TRK system potassium uptake protein TRKA; structural genomics,
center for structural genomics of infec diseases, csgid,
niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Length = 461
Score = 30.3 bits (69), Expect = 0.19
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 4/39 (10%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASEL 71
+IVGGG+ GA LA RL + + V LIE + A +L
Sbjct: 239 MIVGGGNIGASLAKRLEQ--TYSVKLIER--NLQRAEKL 273
Score = 30.3 bits (69), Expect = 0.22
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIE 60
II+G G G LA L E + + +++
Sbjct: 7 IILGAGQVGGTLAENLVGE-NNDITIVD 33
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB;
TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus
rimd 2210633}
Length = 183
Score = 30.1 bits (68), Expect = 0.20
Identities = 9/34 (26%), Positives = 12/34 (35%)
Query: 28 GKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
G +I+G G G + L L IE
Sbjct: 38 GHAQVLILGMGRIGTGAYDELRARYGKISLGIEI 71
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.20
Identities = 6/36 (16%), Positives = 14/36 (38%), Gaps = 5/36 (13%)
Query: 18 VVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELD 53
+V N+ + V G A+ + ++ L+
Sbjct: 1840 LVEIVNYNVENQ---QYVAAGDLRAL--DTVTNVLN 1870
>3cgb_A Pyridine nucleotide-disulfide oxidoreductase, CLA; coenzyme A,
flavin adenine dinucleotide, selenomethionine, F
flavoprotein; HET: COA FAD; 1.90A {Bacillus anthracis
str} PDB: 3cgc_A* 3cgd_A* 3cge_A*
Length = 480
Score = 30.2 bits (69), Expect = 0.23
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 32 FIIVGGGSAGAVLAN---RLSEELDWRVLLIEAGGDPPEAS-ELPGYWF-NLLKSRQDWA 86
++I+GG +AG A R E + V+ +E G A LP Y + S +
Sbjct: 39 YVIIGGDAAGMSAAMQIVRNDE--NANVVTLEKGEIYSYAQCGLP-YVISGAIASTEKLI 95
Query: 87 YRTQPDNRMFFGLENRVNH 105
R R +G++ +V H
Sbjct: 96 ARNVKTFRDKYGIDAKVRH 114
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex,
oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis}
SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Length = 382
Score = 29.9 bits (68), Expect = 0.24
Identities = 10/34 (29%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
++ +++GGG G+ +A L++E + L E+G
Sbjct: 17 HYEAVVIGGGIIGSAIAYYLAKE-NKNTALFESG 49
>2rgh_A Alpha-glycerophosphate oxidase; flavoprotein oxidase,
oxidoreductase; HET: FAD; 2.30A {Streptococcus SP} PDB:
2rgo_A*
Length = 571
Score = 30.0 bits (68), Expect = 0.27
Identities = 11/41 (26%), Positives = 17/41 (41%), Gaps = 11/41 (26%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELD-----WRVLLIEAG 62
+ D +I+GGG GA +A + + LIE
Sbjct: 30 QEELDLLIIGGGITGAGVA------VQAAASGIKTGLIEMQ 64
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 29.8 bits (68), Expect = 0.27
Identities = 12/37 (32%), Positives = 19/37 (51%), Gaps = 7/37 (18%)
Query: 29 KFDFIIVGGGSAG---AVLANRLSEELDWRVLLIEAG 62
+D I++GGG +G A+ A VLL++ G
Sbjct: 26 HYDVIVIGGGPSGLMAAIGAAEEGA----NVLLLDKG 58
>3qbx_A Anhydro-N-acetylmuramic acid kinase; acetate and sugar kinases,
HSP70, actin superfamily, anhydro-N-actetylmuramic acid
binding; HET: AH0; 2.10A {Pseudomonas aeruginosa} PDB:
3qbw_A*
Length = 371
Score = 29.8 bits (68), Expect = 0.29
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 10 TLISTVFTVVSTAED---NISGKFDFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGGDP 65
TL + S +E + ++ GGG+ L RL+ + + RV + G P
Sbjct: 264 TL--LELSARSISESLLDAQPDCEEVLVCGGGAFNTALMKRLAMLMPEARVASTDEYGIP 321
Query: 66 PEASE 70
P E
Sbjct: 322 PAWME 326
>3da1_A Glycerol-3-phosphate dehydrogenase; NESG BHR167 Q9KDW6 X-RAY,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.70A {Bacillus halodurans}
Length = 561
Score = 30.0 bits (68), Expect = 0.29
Identities = 11/41 (26%), Positives = 18/41 (43%), Gaps = 11/41 (26%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELD-----WRVLLIEAG 62
+ D +++GGG GA +A LD + L+E
Sbjct: 16 EKQLDLLVIGGGITGAGIA------LDAQVRGIQTGLVEMN 50
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK
structural genomi research consortium, nysgrc; HET:
FDA; 2.51A {Sinorhizobium meliloti}
Length = 417
Score = 29.8 bits (68), Expect = 0.32
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 7/37 (18%)
Query: 29 KFDFIIVGGGSAG---AVLANRLSEELDWRVLLIEAG 62
K D +I+G G+AG A+ A + RVL+I+
Sbjct: 27 KQDVVIIGAGAAGMMCAIEAGKRGR----RVLVIDHA 59
>3lov_A Protoporphyrinogen oxidase; structural genomics, JO center for
structural genomics, JCSG, protein structure INI PSI-2;
HET: FAD; 2.06A {Exiguobacterium sibiricum}
Length = 475
Score = 29.6 bits (66), Expect = 0.32
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Query: 31 DFIIVGGGSAGAVLANRLSEEL-DWRVLLIEAGG 63
+IVGGG G A D + L+EAG
Sbjct: 6 RLVIVGGGITGLAAAYYAERAFPDLNITLLEAGE 39
>1rsg_A FMS1 protein; FAD binding motif, oxidoreductase; HET: FAD; 1.90A
{Saccharomyces cerevisiae} PDB: 1z6l_A* 3bi2_A* 3bi4_A*
3bi5_A* 3bnm_B* 3bnu_B* 3cn8_B* 3cnd_B* 3cnp_B* 3cns_A*
3cnt_B* 1yy5_A* 1xpq_A*
Length = 516
Score = 29.8 bits (66), Expect = 0.32
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA----GG 63
K II+G G AG A+ L + L++EA GG
Sbjct: 8 KKKVIIIGAGIAGLKAASTLHQNGIQDCLVLEARDRVGG 46
>2vvm_A Monoamine oxidase N; FAD, peroxisome, flavoprotein,
oxidoreductase, enantioselectivity, directed evolution
variant; HET: FAD; 1.85A {Aspergillus niger} PDB:
2vvl_A* 2vvl_G*
Length = 495
Score = 29.9 bits (67), Expect = 0.32
Identities = 12/42 (28%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 20 STAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
+ + + G +D I++GGG G L+ ++ LL+EA
Sbjct: 30 NIEDTDKDGPWDVIVIGGGYCGLTATRDLTVA-GFKTLLLEA 70
>1xhc_A NADH oxidase /nitrite reductase; southe collaboratory for
structural genomics, secsg, hyperthermoph protein
structure initiative, PSI; HET: FAD; 2.35A {Pyrococcus
furiosus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 367
Score = 29.4 bits (67), Expect = 0.32
Identities = 13/45 (28%), Positives = 20/45 (44%), Gaps = 2/45 (4%)
Query: 22 AEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPP 66
A + +IVG G G LA +LS+ + V +I+ P
Sbjct: 1 AHHHHHHGSKVVIVGNGPGGFELAKQLSQ--TYEVTVIDKEPVPY 43
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB:
2ive_A*
Length = 478
Score = 29.6 bits (66), Expect = 0.33
Identities = 9/33 (27%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEAGG 63
+ +VGGG +G +A+ L +L+E+
Sbjct: 18 NVAVVGGGISGLAVAHHLR-SRGTDAVLLESSA 49
>3i6d_A Protoporphyrinogen oxidase; protein-inhibitor complex, cytoplasm,
FAD, flavoprotein, oxidoreductase, porphyrin
biosynthesis; HET: FAD ACJ; 2.90A {Bacillus subtilis}
Length = 470
Score = 29.5 bits (66), Expect = 0.34
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 5/42 (11%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEEL-----DWRVLLIEAGG 63
GK +I+GGG G A + +E+ + L+EA
Sbjct: 3 DGKKHVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASP 44
>1yqz_A Coenzyme A disulfide reductase; oxidoreductase; HET: COA FAD; 1.54A
{Staphylococcus aureus}
Length = 438
Score = 29.4 bits (67), Expect = 0.35
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 8/78 (10%)
Query: 33 IIVGGGSAGAVLAN---RLSEELDWRVLLIEAGGDPPEAS-ELPGYWF-NLLKSRQDWAY 87
++VG + GA A+ RL + + +++ E D A+ LP Y +++ R+
Sbjct: 5 VVVGAVAGGATCASQIRRLDK--ESDIIIFEKDRDMSFANCALP-YVIGEVVEDRRYALA 61
Query: 88 RTQPDNRMFFGLENRVNH 105
T + + H
Sbjct: 62 YTPEKFYDRKQITVKTYH 79
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann,
PSI, M structural genomics; 1.70A {Archaeoglobus
fulgidus}
Length = 141
Score = 28.8 bits (65), Expect = 0.35
Identities = 9/34 (26%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
+G++++I++G +AG L L+ +VL ++
Sbjct: 4 NGRYEYIVIGSEAAGVGLVRELTAA-GKKVLAVD 36
>2qcu_A Aerobic glycerol-3-phosphate dehydrogenase; glycerol-3-phoshate
dehydrogenase, oxidoreductase; HET: BOG FAD TAM; 1.75A
{Escherichia coli} PDB: 2r45_A* 2r46_A* 2r4e_A* 2r4j_A*
Length = 501
Score = 29.5 bits (67), Expect = 0.36
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 11/38 (28%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELD-----WRVLLIEAG 62
D I++GGG GA +A D VL++EA
Sbjct: 4 KDLIVIGGGINGAGIA------ADAAGRGLSVLMLEAQ 35
>2z3y_A Lysine-specific histone demethylase 1; chromatin, nucleosome,
transcription, LSD1, alternative splicing, chromatin
regulator, coiled coil; HET: F2N; 2.25A {Homo sapiens}
SCOP: a.4.1.18 c.3.1.2 d.16.1.5 PDB: 2ejr_A* 2z5u_A*
3abt_A* 3abu_A* 2y48_A* 2v1d_A* 2h94_A* 2iw5_A* 2uxn_A*
2uxx_A* 2hko_A* 2dw4_A* 2x0l_A* 2l3d_A
Length = 662
Score = 29.5 bits (65), Expect = 0.39
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEA 61
II+G G +G A +L V L+EA
Sbjct: 107 TGKVIIIGSGVSGLAAARQLQ-SFGMDVTLLEA 138
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 29.4 bits (67), Expect = 0.39
Identities = 9/35 (25%), Positives = 16/35 (45%), Gaps = 7/35 (20%)
Query: 29 KFDFIIVGGGSAG---AVLANRLSEELDWRVLLIE 60
+ II+G G+AG A +L + V + +
Sbjct: 4 YSENIIIGAGAAGLFCAAQLAKLGK----SVTVFD 34
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 29.3 bits (66), Expect = 0.44
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIE----AGG 63
++VG GSAG + + V+L++ +GG
Sbjct: 121 TTQVLVVGAGSAGFNASLAAKKA-GANVILVDKAPFSGG 158
>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain,
NAD, RCK domain, potassium transport, potassium
channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus
jannaschii} SCOP: c.2.1.9
Length = 140
Score = 28.7 bits (65), Expect = 0.48
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIE 60
II G G G LA LSE+ ++LI+
Sbjct: 8 IIAGIGRVGYTLAKSLSEK-GHDIVLID 34
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 29.1 bits (65), Expect = 0.55
Identities = 8/37 (21%), Positives = 16/37 (43%)
Query: 26 ISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
++ +IVG G+ G A L+ V +++
Sbjct: 3 VTKSSSLLIVGAGTWGTSTALHLARRGYTNVTVLDPY 39
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 28.7 bits (65), Expect = 0.56
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 13/40 (32%)
Query: 29 KFDFIIVGGGSAG--AVL----ANRLSEELDWRVLLIEAG 62
D ++G G AG A L A + ++ L +
Sbjct: 6 YIDCAVIGAGPAGLNASLVLGRARK-------QIALFDNN 38
>3cty_A Thioredoxin reductase; FAD, oxidoreductase, flavin, flavoprotein;
HET: FAD; 2.35A {Thermoplasma acidophilum}
Length = 319
Score = 28.6 bits (65), Expect = 0.66
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 16 FTVVSTAEDNISGKFDFIIVGGGSAG---AVLANRLSEELDWRVLLIE---AGG 63
F + + + + FD +IVG G+AG AV A R V +++ AGG
Sbjct: 3 FNLHAVSSEEKERDFDVVIVGAGAAGFSAAVYAAR--SGF--SVAILDKAVAGG 52
>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD,
tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A
{Pseudomonas aeruginosa}
Length = 380
Score = 28.8 bits (65), Expect = 0.67
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 34 IVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPG 73
+VG G G L L L W+VL+ DPP + P
Sbjct: 121 VVGAGQVGGRLVEVL-RGLGWKVLVC----DPPRQAREPD 155
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 28.8 bits (65), Expect = 0.68
Identities = 12/41 (29%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Query: 3 RMS-SLLLTLISTVFTVVSTAEDNISGKFDFIIVGGGSAGA 42
RM+ + ++ + T + N +D +IVG G AGA
Sbjct: 185 RMTLTEIVAKVDTGAEKRAAEALNKRDAYDVLIVGSGPAGA 225
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 28.7 bits (65), Expect = 0.73
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
K + +++GGG G +A+ L+ + V +IE
Sbjct: 5 KSEIVVIGGGIVGVTIAHELA-KRGEEVTVIEKR 37
>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center
for structural genomics of infec diseases, csgid; HET:
NAD; 2.36A {Salmonella enterica subsp}
Length = 381
Score = 28.4 bits (64), Expect = 0.74
Identities = 17/40 (42%), Positives = 20/40 (50%), Gaps = 5/40 (12%)
Query: 34 IVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPG 73
IVG G+ G+ L RL E L R LL DPP A+
Sbjct: 124 IVGVGNVGSRLQTRL-EALGIRTLLC----DPPRAARGDE 158
>2iid_A L-amino-acid oxidase; flavoenzyme, FAD binding domain, reaction
mechanism, sustrat binding, oxidoreductase; HET: NAG
FUC PHE FAD; 1.80A {Calloselasma rhodostoma} SCOP:
c.3.1.2 d.16.1.5 PDB: 1f8s_A* 1f8r_A* 1reo_A* 1tdk_A*
1tdn_A* 1tdo_A* 3kve_A* 4e0v_A*
Length = 498
Score = 28.7 bits (64), Expect = 0.75
Identities = 14/58 (24%), Positives = 21/58 (36%), Gaps = 13/58 (22%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEA----GG--------DPPEASELPGYWF 76
+IVG G AG A L+ +V ++EA GG + + L
Sbjct: 35 HVVIVGAGMAGLSAAYVLA-GAGHQVTVLEASERPGGRVRTYRNEEAGWYANLGPMRL 91
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 28.5 bits (64), Expect = 0.78
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
D +I+G G AG A + +V+L+E
Sbjct: 126 TTDVVIIGSGGAGLAAAVSAR-DAGAKVILLE 156
>1k0i_A P-hydroxybenzoate hydroxylase; PHBH, FAD, P-OHB, hydrolase; HET:
FAD PHB; 1.80A {Pseudomonas aeruginosa} SCOP: c.3.1.2
d.16.1.2 PDB: 1k0j_A* 1k0l_A* 1doc_A* 1d7l_A* 1dod_A*
1doe_A* 1ius_A* 1iut_A* 1iuu_A* 1iuv_A* 1iuw_A* 1iux_A*
1pxb_A* 1pxc_A* 1dob_A* 1ykj_A* 1pxa_A* 1pbe_A* 1pdh_A*
1phh_A* ...
Length = 394
Score = 28.5 bits (64), Expect = 0.80
Identities = 7/33 (21%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
I+G G +G +L L + +++E
Sbjct: 6 AIIGAGPSGLLLGQLLHKA-GIDNVILERQTPD 37
>3ihg_A RDME; flavoenzyme, anthracycline, polyketide biosynthesis,
merohedral twinning, enzyme mechanism, hydroxylase,
flavoprotein; HET: FAD VAK; 2.49A {Streptomyces
purpurascens}
Length = 535
Score = 28.5 bits (64), Expect = 0.83
Identities = 11/42 (26%), Positives = 15/42 (35%), Gaps = 7/42 (16%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDW---RVLLIEAGGDPPEAS 69
D ++VG G G A L RVL++E
Sbjct: 7 DVLVVGAGLGGLSTAM----FLARQGVRVLVVERRPGLSPYP 44
>3ic9_A Dihydrolipoamide dehydrogenase; APC62701, colwellia psychrer 34H,
structural genomics, PSI-2; HET: FAD; 2.15A {Colwellia
psychrerythraea}
Length = 492
Score = 28.3 bits (64), Expect = 0.89
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
D I+G G+AG + +V+LIE G
Sbjct: 8 NVDVAIIGTGTAGMGAYRAAK-KHTDKVVLIEGG 40
>3lad_A Dihydrolipoamide dehydrogenase; oxidoreductase; HET: FAD; 2.20A
{Azotobacter vinelandii} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1lpf_A*
Length = 476
Score = 28.2 bits (64), Expect = 1.1
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEASELPG 73
S KFD I++G G G V A + + +L + LIE + L G
Sbjct: 1 SQKFDVIVIGAGPGGYVAAIKSA-QLGLKTALIEKYKGKEGKTALGG 46
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 28.1 bits (63), Expect = 1.1
Identities = 11/42 (26%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDW---RVLLIEAGGDPPEAS 69
D +I+GGG G LA +L L++E
Sbjct: 28 DVLILGGGPVGMALAL----DLAHRQVGHLVVEQTDGTITHP 65
>3oc4_A Oxidoreductase, pyridine nucleotide-disulfide FAM; structural
genomics, PSI-2, protein structure initiative; HET: FAD;
2.60A {Enterococcus faecalis}
Length = 452
Score = 27.8 bits (63), Expect = 1.2
Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 9/79 (11%)
Query: 32 FIIVGGGSAGAVLAN---RLSEELDWRVLLIEAGGDPPEAS-ELPGYWF-NLLKSRQDWA 86
+I+G AG A + + + + LI+ S L +F + + +
Sbjct: 5 IVIIGASFAGISAAIASRKKYPQAE--ISLIDKQATVGYLSGGLS-AYFNHTINELHEAR 61
Query: 87 YRTQPDNRMFFGLENRVNH 105
Y T + ++ +N
Sbjct: 62 YIT-EEELRRQKIQLLLNR 79
>1b37_A Protein (polyamine oxidase); flavin-dependent amine oxidase,
oxidoreductase; HET: NAG FCA MAN FAD; 1.90A {Zea mays}
SCOP: c.3.1.2 d.16.1.5 PDB: 1b5q_A* 1h81_A* 1h82_A*
1h83_A* 1h84_A* 1h86_A* 3kpf_A* 3ku9_A* 3l1r_A*
Length = 472
Score = 27.9 bits (62), Expect = 1.3
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 4/37 (10%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIEA----GG 63
I+VG G +G A RLSE +L++EA GG
Sbjct: 6 RVIVVGAGMSGISAAKRLSEAGITDLLILEATDHIGG 42
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 27.8 bits (63), Expect = 1.3
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 2/22 (9%)
Query: 26 ISGKFDFIIVGGGSAG--AVLA 45
+ +FD +++GGG AG A LA
Sbjct: 24 VVDEFDVVVIGGGHAGIEAALA 45
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA,
GIDA; tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 27.8 bits (63), Expect = 1.4
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 27 SGKFDFIIVGGGSAG--AVLA 45
FD II+GGG AG A +A
Sbjct: 26 PDPFDVIIIGGGHAGTEAAMA 46
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 27.7 bits (61), Expect = 1.4
Identities = 8/41 (19%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPE 67
+ I++G G G L+ ++ + +++E G + E
Sbjct: 105 NLTERPIVIGFGPCGLFAGLVLA-QMGFNPIIVERGKEVRE 144
>3nkl_A UDP-D-quinovosamine 4-dehydrogenase; alpha-beta fold, structural
genomics, PSI-2, protein structu initiative; HET: MSE
GOL; 1.90A {Vibrio fischeri}
Length = 141
Score = 27.1 bits (61), Expect = 1.4
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRV 56
+I G GSAG LAN L + ++
Sbjct: 8 LIYGAGSAGLQLANMLRQGKEFHP 31
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB
prenylation, post-translational modification, protein
binding/protein transport complex; HET: GER GDP PG4;
2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB:
1vg9_A* 1ltx_R*
Length = 650
Score = 28.0 bits (61), Expect = 1.4
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 23 EDNISGKFDFIIVGGGSAGAVLANRLS 49
DN+ FD I++G G +++A S
Sbjct: 2 ADNLPSDFDVIVIGTGLPESIIAAACS 28
>3eh1_A Protein transport protein SEC24B; copii coat protein, vesicle
transport, transport signal sequence, cytoplasm,
endoplasmic reticulum; 1.80A {Homo sapiens} PDB: 2nut_B
2nup_B 3egd_B 3egx_B
Length = 751
Score = 28.0 bits (61), Expect = 1.5
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 1/34 (2%)
Query: 65 PPEASELPGYWFNLLKSRQD-WAYRTQPDNRMFF 97
P P Y LLK + T+ D+R++
Sbjct: 551 PSSLKLFPLYVLALLKQKAFRTGTSTRLDDRVYA 584
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 27.8 bits (63), Expect = 1.6
Identities = 11/21 (52%), Positives = 13/21 (61%), Gaps = 2/21 (9%)
Query: 27 SGKFDFIIVGGGSAG--AVLA 45
S +D I+VG G AG A LA
Sbjct: 19 SHMYDVIVVGAGHAGCEAALA 39
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex;
HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 27.2 bits (61), Expect = 1.6
Identities = 5/20 (25%), Positives = 8/20 (40%), Gaps = 2/20 (10%)
Query: 28 GKFDFIIVGGGSAG--AVLA 45
+ +IVG G +G
Sbjct: 2 AAYQVLIVGAGFSGAETAFW 21
>1m2o_A SEC23, protein transport protein SEC23, SEC23P; zinc-finger, beta
barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A
{Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1
c.62.1.2 d.109.2.1 g.41.10.1 PDB: 1m2v_A 2qtv_A*
Length = 768
Score = 27.7 bits (60), Expect = 1.7
Identities = 8/33 (24%), Positives = 14/33 (42%)
Query: 65 PPEASELPGYWFNLLKSRQDWAYRTQPDNRMFF 97
P S P + + L +S+ + PD F+
Sbjct: 577 APNFSLYPQFTYYLRRSQFLSVFNNSPDETAFY 609
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved
protein, rossmann fold, structural genomics, NPPSFA;
HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Length = 180
Score = 27.1 bits (61), Expect = 1.8
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 11/39 (28%)
Query: 30 FDFIIVGGGSAG---AVLANR--LSEELDWRVLLIEAGG 63
+D I+VGGG +G A+ R L VL+++ G
Sbjct: 2 WDVIVVGGGPSGLSAALFLARAGLK------VLVLDGGR 34
>2qa2_A CABE, polyketide oxygenase CABE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 2.70A {Streptomyces}
Length = 499
Score = 27.3 bits (61), Expect = 2.2
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
I+VG G AG +LA L V+++E S
Sbjct: 16 IVVGAGPAGLMLAGELR-LGGVDVMVLEQLPQRTGES 51
>3ikw_A Heparin lyase I; polysaccharide lyase, beta-jelly roll; 1.30A
{Bacteroides thetaiotaomicron} PDB: 3ilr_A* 3imn_A
3in9_A* 3ina_A*
Length = 374
Score = 27.1 bits (59), Expect = 2.5
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Query: 57 LLIEAGGDPPEASELPGYWFNLLKSRQDWAYRTQPDNR 94
L+E GG PP A G F +K+ D + T D+R
Sbjct: 217 WLVEQGGYPPLAFGFSGGLF-YIKANSDRKWLTDKDDR 253
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 27.3 bits (60), Expect = 2.5
Identities = 5/13 (38%), Positives = 7/13 (53%)
Query: 29 KFDFIIVGGGSAG 41
D ++VGGG
Sbjct: 22 SVDLLMVGGGMGN 34
>3iwa_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
structural genomics, PSI-2, protein structur initiative;
2.30A {Desulfovibrio vulgaris}
Length = 472
Score = 26.7 bits (60), Expect = 2.8
Identities = 14/84 (16%), Positives = 27/84 (32%), Gaps = 14/84 (16%)
Query: 33 IIVGGGSAGAVLAN---RLSEELDWRVLLIEAGGDPPEAS-ELPGYW-------FNLLKS 81
+++G + G A RL + V +I+ +P Y+ L++
Sbjct: 7 VVIGAVALGPKAACRFKRLDP--EAHVTMIDQASRISYGGCGIP-YYVSGEVSNIESLQA 63
Query: 82 RQDWAYRTQPDNRMFFGLENRVNH 105
R R+ +E V
Sbjct: 64 TPYNVVRDPEFFRINKDVEALVET 87
>2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic
DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38
PDB: 2gzr_A*
Length = 278
Score = 26.9 bits (59), Expect = 3.0
Identities = 9/91 (9%), Positives = 21/91 (23%), Gaps = 9/91 (9%)
Query: 17 TVVSTAEDNISGKFDFIIVGGGSAGA---VLANRLSE------ELDWRVLLIEAGGDPPE 67
+ +S K +IV G L +R + +
Sbjct: 57 RLDDELLKQLSEKTPPVIVAVGYQTNLPFDLNSRAYDYTPAAESRKTDLHSGRFSRKSGG 116
Query: 68 ASELPGYWFNLLKSRQDWAYRTQPDNRMFFG 98
++ + + + R +G
Sbjct: 117 SNNFRQLLETRIAPKVEQGLNIDRQRRGLWG 147
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 26.9 bits (60), Expect = 3.0
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 7/39 (17%)
Query: 30 FDFIIVGGGSAGAVLANRLSEE-LDWRVLLIE----AGG 63
D ++ G G AG + + VL++E GG
Sbjct: 42 ADVVVAGYGIAGVAASIEAARAGA--DVLVLERTSGWGG 78
>2qa1_A PGAE, polyketide oxygenase PGAE; FAD, angucycline, aromatic
hydroxylase, oxidored; HET: FAD; 1.80A {Streptomyces}
Length = 500
Score = 26.9 bits (60), Expect = 3.3
Identities = 12/37 (32%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
I+VG G AG +LA L V+++E + S
Sbjct: 15 IVVGAGPAGMMLAGELR-LAGVEVVVLERLVERTGES 50
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 26.6 bits (59), Expect = 3.4
Identities = 6/33 (18%), Positives = 14/33 (42%), Gaps = 1/33 (3%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
++VG G G + L+ ++++E
Sbjct: 4 VVVGAGLGGLLAGAFLARN-GHEIIVLEKSAMI 35
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 26.4 bits (59), Expect = 3.9
Identities = 11/38 (28%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGGDPP 66
+ +IVG G AG +A L W + L+ P
Sbjct: 6 NVVIVGTGLAGVEVAFGLRAS-GWEGNIRLVGDATVIP 42
>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium
channel, BK channel, rossmann fold, membrane protein;
2.40A {Escherichia coli} SCOP: c.2.1.9
Length = 153
Score = 25.8 bits (57), Expect = 4.0
Identities = 6/37 (16%), Positives = 12/37 (32%), Gaps = 1/37 (2%)
Query: 32 FIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEA 68
FI+ G +L++ V +I +
Sbjct: 6 FIVCGHSILAINTILQLNQR-GQNVTVISNLPEDDIK 41
>1nhp_A NADH peroxidase; oxidoreductase (H2O2(A)); HET: FAD; 2.00A
{Enterococcus faecalis} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
PDB: 1npx_A* 1joa_A* 2npx_A* 1nhq_A* 1nhs_A* 1nhr_A*
1f8w_A*
Length = 447
Score = 26.3 bits (59), Expect = 4.1
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 5/36 (13%)
Query: 33 IIVGGGSAGAVLAN---RLSEELDWRVLLIEAGGDP 65
I++G G L + + + E G
Sbjct: 4 IVLGSSHGGYEAVEELLNLHPDAE--IQWYEKGDFI 37
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 26.4 bits (59), Expect = 4.1
Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 3/47 (6%)
Query: 22 AEDNISGKFDFIIVGGGSAGAVLANRLSEELDW--RVLLIEAGGDPP 66
A + + + D +IVG G GA A L + + RVL+I + P
Sbjct: 2 ASEVQAERADVVIVGAGHGGAQAAIALRQN-GFEGRVLVIGREPEIP 47
>2cdu_A NADPH oxidase; flavoenzyme, oxidoreductase; HET: FAD ADP; 1.8A
{Lactobacillus sanfranciscensis}
Length = 452
Score = 26.3 bits (59), Expect = 4.2
Identities = 8/36 (22%), Positives = 11/36 (30%), Gaps = 5/36 (13%)
Query: 33 IIVGGGSAGAVLAN---RLSEELDWRVLLIEAGGDP 65
I+VG AG + D V E +
Sbjct: 4 IVVGCTHAGTFAVKQTIADHPDAD--VTAYEMNDNI 37
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 26.0 bits (58), Expect = 4.6
Identities = 7/40 (17%), Positives = 11/40 (27%), Gaps = 7/40 (17%)
Query: 29 KFDFIIVGGGSAG---AVLANRLSEELDWRVLLIEAGGDP 65
D +IVG G G ++ +P
Sbjct: 5 HTDVLIVGAGPTGLFAGFYVGM----RGLSFRFVDPLPEP 40
>3s5w_A L-ornithine 5-monooxygenase; class B flavin dependent
N-hydroxylating monooxygenase, CLAS flavin dependent
monooxygenase N-hydroxylating; HET: FAD ONH NAP; 1.90A
{Pseudomonas aeruginosa} PDB: 3s61_A*
Length = 463
Score = 26.2 bits (57), Expect = 5.3
Identities = 10/29 (34%), Positives = 12/29 (41%)
Query: 30 FDFIIVGGGSAGAVLANRLSEELDWRVLL 58
D I VG G + LA L E + L
Sbjct: 31 HDLIGVGFGPSNIALAIALQERAQAQGAL 59
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage
enzym; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB:
1a96_A* 1a95_A 1a98_A 1a97_A*
Length = 152
Score = 25.4 bits (56), Expect = 5.4
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 27 SGKFDFII-VGGGSAGAVLANRLSEELDWRVL 57
S ++ II V G G V L+ EL R +
Sbjct: 26 SEQWKGIIAVSRG--GLVPGALLARELGIRHV 55
>3ihm_A Styrene monooxygenase A; rossman fold, anti-parallel beta
strands, dimer, cavity, oxidoreductase; 2.30A
{Pseudomonas putida}
Length = 430
Score = 26.0 bits (56), Expect = 5.5
Identities = 10/29 (34%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIEA 61
IVG G+AG L L + D V +
Sbjct: 26 GIVGAGTAGLHLGLFLRQH-DVDVTVYTD 53
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 26.0 bits (58), Expect = 5.6
Identities = 7/37 (18%), Positives = 11/37 (29%), Gaps = 3/37 (8%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
I+G G AG L + + + S
Sbjct: 3 YIIGSGIAGLSAGVALRRAG--KKVTL-ISKRIDGGS 36
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION
transporter, symporter, transport protein; HET: NAI;
2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A*
2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Length = 144
Score = 25.3 bits (56), Expect = 5.7
Identities = 7/30 (23%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 31 DFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
F ++G G G + L VL ++
Sbjct: 8 QFAVIGLGRFGGSIVKELHRM-GHEVLAVD 36
>3l8k_A Dihydrolipoyl dehydrogenase; redox-active center, structural
genomics, PSI-2, protein structure initiative; HET:
ADP; 2.50A {Sulfolobus solfataricus}
Length = 466
Score = 26.0 bits (58), Expect = 5.9
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
S K+D +++G G AG A RL+ + + VL+ +
Sbjct: 2 SLKYDVVVIGAGGAGYHGAFRLA-KAKYNVLMAD 34
>2e1m_A L-glutamate oxidase; L-amino acid oxidase, FAD, L-GOX, flavo
oxidoreductase; HET: FAD; 2.80A {Streptomyces SP}
Length = 376
Score = 26.1 bits (56), Expect = 5.9
Identities = 11/32 (34%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 33 IIVGGGSAGAVLANRLSEELDWRVLLIEAGGD 64
+IVG G AG V + L V ++EA +
Sbjct: 48 LIVGAGIAGLVAGDLL-TRAGHDVTILEANAN 78
>1c0p_A D-amino acid oxidase; alpha-beta-alpha motif, flavin containing
protein, oxidoreductase; HET: FAD; 1.20A
{Rhodosporidium toruloides} SCOP: c.4.1.2 d.16.1.3 PDB:
1c0i_A* 1c0l_A* 1c0k_A*
Length = 363
Score = 25.8 bits (56), Expect = 6.4
Identities = 7/43 (16%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
+ +++G G G A L+ + + V ++ +S
Sbjct: 4 HSQKRVVVLGSGVIGLSSALILARK-GYSVHILARDLPEDVSS 45
>1ebd_A E3BD, dihydrolipoamide dehydrogenase; redox-active center,
glycolysis, oxidoreductase; HET: FAD; 2.60A
{Geobacillus stearothermophilus} SCOP: c.3.1.5 c.3.1.5
d.87.1.1
Length = 455
Score = 25.9 bits (58), Expect = 6.5
Identities = 11/36 (30%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAG 62
+ + + ++VG G G V A R + +L +V ++E G
Sbjct: 1 AIETETLVVGAGPGGYVAAIRAA-QLGQKVTIVEKG 35
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 25.9 bits (58), Expect = 6.6
Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
+ D +I+GGG AG V A + + +L + +E
Sbjct: 3 NKSHDVVIIGGGPAGYVAAIKAA-QLGFNTACVE 35
>1dxl_A Dihydrolipoamide dehydrogenase; oxidoreductase, multienzyme
complex protein, pyruvate dehydrogenase complex,
glycine decarboxylase complex; HET: FAD; 3.15A {Pisum
sativum} SCOP: c.3.1.5 c.3.1.5 d.87.1.1
Length = 470
Score = 25.5 bits (57), Expect = 6.8
Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
S + D +I+GGG G V A + + +L ++ IE
Sbjct: 4 SDENDVVIIGGGPGGYVAAIKAA-QLGFKTTCIE 36
>3ef6_A Toluene 1,2-dioxygenase system ferredoxin--NAD(+) reductase; FAD
binding protein, NADH binding protein, aromatic
hydrocar catabolism, FAD; HET: FAD; 1.80A {Pseudomonas
putida}
Length = 410
Score = 25.6 bits (57), Expect = 7.1
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 1/37 (2%)
Query: 31 DFIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPP 66
I+G G G A L E + R+ LI P
Sbjct: 4 HVAIIGNGVGGFTTAQALRAEGFEGRISLIGDEPHLP 40
>2nut_A Protein transport protein SEC23A; human copii SEC23/24 complexed
with SEC22, protein transport; 2.30A {Homo sapiens} PDB:
2nup_A 3egd_A 3eg9_A 3egx_A 3efo_A
Length = 769
Score = 25.7 bits (55), Expect = 7.2
Identities = 7/33 (21%), Positives = 13/33 (39%)
Query: 65 PPEASELPGYWFNLLKSRQDWAYRTQPDNRMFF 97
S P + F+L +S + PD ++
Sbjct: 575 SETFSLYPQFMFHLRRSSFLQVFNNSPDESSYY 607
>3c4a_A Probable tryptophan hydroxylase VIOD; alpha-beta protein,
structural genomics, PSI-2, protein structure
initiative; HET: FAD; 2.30A {Chromobacterium violaceum
atcc 12472}
Length = 381
Score = 25.5 bits (55), Expect = 7.3
Identities = 9/57 (15%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Query: 33 IIVGGGSAGAVLANRLSE-ELDWRVLLIEAGGDPPEASELPGYWFNLLKSRQDWAYR 88
+++G G AG V A++L + W + ++E + + +
Sbjct: 4 LVIGAGPAGLVFASQLKQARPLWAIDIVEKNDEQEVLGWGVVLPGRPGQHPANPLSY 60
>3fmw_A Oxygenase; mithramycin, baeyer-villiger, flavin binding protein,
oxidoreductase; HET: FAD; 2.89A {Streptomyces
argillaceus}
Length = 570
Score = 25.4 bits (56), Expect = 7.8
Identities = 14/53 (26%), Positives = 24/53 (45%), Gaps = 7/53 (13%)
Query: 20 STAEDNISGKFDFIIVGGGSAGAVLANRLSEELDW---RVLLIEAGGDPPEAS 69
++ D+ + D ++VGGG G +LA EL L++E +P
Sbjct: 40 NSNADDAALTTDVVVVGGGPVGLMLAG----ELRAGGVGALVLEKLVEPVGHD 88
>3d1c_A Flavin-containing putative monooxygenase; NP_373108.1, struc
genomics, joint center for structural genomics, JCSG;
HET: FAD UNL; 2.40A {Staphylococcus aureus}
Length = 369
Score = 25.5 bits (56), Expect = 7.8
Identities = 9/37 (24%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 29 KFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDP 65
I+G G+AG +A L ++ ++I G
Sbjct: 4 HHKVAIIGAGAAGIGMAITL-KDFGITDVIILEKGTV 39
>2bc0_A NADH oxidase; flavoprotein, pyridine nucleotide disulfide
oxidoreductase, C(4A)-peroxyflavin, crystallography,
conformational dynamics; HET: FAD; 2.00A {Streptococcus
pyogenes} PDB: 2bcp_A* 2bc1_A*
Length = 490
Score = 25.6 bits (57), Expect = 7.9
Identities = 7/77 (9%), Positives = 21/77 (27%), Gaps = 6/77 (7%)
Query: 33 IIVGGGSAGAVLANRLSEELD--WRVLLIEAGGDPPEAS-ELPGYWF-NLLKSRQDWAYR 88
++VG AG + +++ + + + W + + Y
Sbjct: 39 VVVGANHAGTACIKTMLTNYGDANEIVVFDQNSNISFLGAGMA-LWIGEQIAGPEGLFYS 97
Query: 89 TQPDNRMFFGLENRVNH 105
+ G + +
Sbjct: 98 D-KEELESLGAKVYMES 113
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase,
multicopper oxidase, hexamer; 2.30A {Streptomyces
antibioticus} PDB: 3gyr_A
Length = 612
Score = 25.7 bits (55), Expect = 8.0
Identities = 16/90 (17%), Positives = 27/90 (30%), Gaps = 12/90 (13%)
Query: 63 GDPPEASELPGYWFNLLKSRQDWAYRTQPDNRMFFGLENRVNHWPRGKGLGGFPATGLIY 122
D +A LP + D T D R+ L ++ + G P + +
Sbjct: 194 DDEEDALGLPSGDREIPLLIADRNLDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFF 253
Query: 123 SNH------------VKTGRIELNLIIACS 140
+ V G L L+ A +
Sbjct: 254 GPYTTVNGRIWPYADVDDGWYRLRLVNASN 283
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 25.6 bits (55), Expect = 8.3
Identities = 21/136 (15%), Positives = 33/136 (24%), Gaps = 42/136 (30%)
Query: 10 TLISTVFTVVSTAEDNISGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIEAGGDPPEAS 69
L++T F V+ + I + S L + L + L P E
Sbjct: 268 ILLTTRFKQVTDFLSAATTTH--ISLDHHSMT--LTPDEVKSLLLKYLDCRPQDLPREVL 323
Query: 70 EL-PGYWFNLLKSRQDWAYRTQPDNRMFFG--LENRVNHWPRGKGLGGFPATGLIYSNHV 126
P S + + + W HV
Sbjct: 324 TTNP-----RRLS--------------IIAESIRDGLATW--------------DNWKHV 350
Query: 127 KTGRIELNLIIACSLD 142
+ L II SL+
Sbjct: 351 NCDK--LTTIIESSLN 364
>3urh_A Dihydrolipoyl dehydrogenase; PSI-biology, structural genomics,
protein structure initiati YORK structural genomics
research consortium; HET: FAD; 1.90A {Sinorhizobium
meliloti}
Length = 491
Score = 25.6 bits (57), Expect = 8.4
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLSEELDWRVLLIE 60
+D I++G G G V A + + +L +V ++E
Sbjct: 23 MMAYDLIVIGSGPGGYVCAIKAA-QLGMKVAVVE 55
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 25.2 bits (56), Expect = 8.6
Identities = 11/36 (30%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 32 FIIVGGGSAGAVLANRLSEE-LDWRVLLIEAGGDPP 66
+I G G AG +A L + R+ LI P
Sbjct: 4 VLIAGAGHAGFQVAVSLRQAKYPGRIALINDEKHLP 39
>3ayj_A Pro-enzyme of L-phenylalanine oxidase; amino acid oxidase,
flavoenzyme, L- binding, oxidoreductase; HET: FAD PHE;
1.10A {Pseudomonas} PDB: 2yr4_A* 2yr6_A* 3ayi_A*
2yr5_A* 3ayl_A*
Length = 721
Score = 25.6 bits (54), Expect = 9.0
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 7/46 (15%)
Query: 27 SGKFDFIIVGGGSAGAVLANRLS-------EELDWRVLLIEAGGDP 65
+G + IVGGG+ G L V + EA D
Sbjct: 54 AGNYRIAIVGGGAGGIAALYELGRLAATLPAGSGIDVQIYEADPDS 99
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET:
FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP:
a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A*
1qlb_A*
Length = 660
Score = 25.4 bits (56), Expect = 9.7
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 29 KFDFIIVGGGSAG 41
D +++GGG AG
Sbjct: 5 YCDSLVIGGGLAG 17
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 25.2 bits (56), Expect = 9.8
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 7/40 (17%)
Query: 29 KFDFIIVGGGSAG---AVLANRLSEELDWRVLLIEAGGDP 65
+D I+GGG G A V +IE+
Sbjct: 7 VYDITIIGGGPVGLFTAFYGGM----RQASVKIIESLPQL 42
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.427
Gapped
Lambda K H
0.267 0.0777 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,300,321
Number of extensions: 135335
Number of successful extensions: 604
Number of sequences better than 10.0: 1
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 206
Length of query: 146
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 61
Effective length of database: 4,328,508
Effective search space: 264038988
Effective search space used: 264038988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)