BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3409
(139 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RES6|TPPC2_PONAB Trafficking protein particle complex subunit 2 OS=Pongo abelii
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 107/138 (77%), Gaps = 2/138 (1%)
Query: 1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
M+ +YFV+VG DNP+++ F + K + +++++ +FIAHA+LDL+DE +W +++MY
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
LKT+DKFN+ VSAFVT ++F+M+HD + E+GIK FFT VY+L+IK+S+NPFY+ N+P
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120
Query: 119 INSTYFDSKVNFLGRKFL 136
I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138
>sp|P0DI82|TPC2B_HUMAN Trafficking protein particle complex subunit 2 protein TRAPPC2P1
OS=Homo sapiens GN=TRAPPC2P1 PE=1 SV=1
Length = 140
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 107/138 (77%), Gaps = 2/138 (1%)
Query: 1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
M+ +YFV+VG DNP+++ F + K + +++++ +FIAHA+LDL+DE +W +++MY
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
LKT+DKFN+ VSAFVT ++F+M+HD + E+GIK FFT VY+L+IK+S+NPFY+ N+P
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120
Query: 119 INSTYFDSKVNFLGRKFL 136
I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138
>sp|P0DI81|TPC2A_HUMAN Trafficking protein particle complex subunit 2 OS=Homo sapiens
GN=TRAPPC2 PE=1 SV=1
Length = 140
Score = 156 bits (394), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 71/138 (51%), Positives = 107/138 (77%), Gaps = 2/138 (1%)
Query: 1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
M+ +YFV+VG DNP+++ F + K + +++++ +FIAHA+LDL+DE +W +++MY
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
LKT+DKFN+ VSAFVT ++F+M+HD + E+GIK FFT VY+L+IK+S+NPFY+ N+P
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFSMNPFYEPNSP 120
Query: 119 INSTYFDSKVNFLGRKFL 136
I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138
>sp|F1SRI0|TPPC2_PIG Trafficking protein particle complex subunit 2 OS=Sus scrofa
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 107/138 (77%), Gaps = 2/138 (1%)
Query: 1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
M+ +YFV+VG DNP+++ F + K + +++++ +FIAHA+LDL+DE +W +++MY
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
LKT+DKFN+ VSAFVT ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120
Query: 119 INSTYFDSKVNFLGRKFL 136
I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138
>sp|Q3T0F2|TPPC2_BOVIN Trafficking protein particle complex subunit 2 OS=Bos taurus
GN=TRAPPC2 PE=2 SV=1
Length = 140
Score = 155 bits (392), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 107/138 (77%), Gaps = 2/138 (1%)
Query: 1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
M+ +YFV+VG DNP+++ F + K + +++++ +FIAHA+LDL+DE +W +++MY
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
LKT+DKFN+ VSAFVT ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120
Query: 119 INSTYFDSKVNFLGRKFL 136
I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138
>sp|E2QV03|TPPC2_CANFA Trafficking protein particle complex subunit 2 OS=Canis familiaris
GN=TRAPPC2 PE=3 SV=1
Length = 140
Score = 155 bits (392), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 107/138 (77%), Gaps = 2/138 (1%)
Query: 1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
M+ +YFV+VG DNP+++ F + K + +++++ +FIAHA+LDL+DE +W +++MY
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
LKT+DKFN+ VSAFVT ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDIRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120
Query: 119 INSTYFDSKVNFLGRKFL 136
I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138
>sp|D3ZVF4|TPPC2_RAT Trafficking protein particle complex subunit 2 OS=Rattus norvegicus
GN=Trappc2 PE=3 SV=1
Length = 140
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 106/138 (76%), Gaps = 2/138 (1%)
Query: 1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
M+ +YFV+VG DNP+++ F + K + +E+++ +FIAHA+LDL+DE +W +++MY
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPAGKTESKDEHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
LKT+DKFN+ VSAFVT ++ +M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRLIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120
Query: 119 INSTYFDSKVNFLGRKFL 136
I ST F+ KV FLG+K L
Sbjct: 121 IRSTAFERKVQFLGKKHL 138
>sp|Q08CN0|TPPC2_DANRE Trafficking protein particle complex subunit 2 OS=Danio rerio
GN=trappc2 PE=2 SV=1
Length = 140
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 69/138 (50%), Positives = 105/138 (76%), Gaps = 2/138 (1%)
Query: 1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
M+ +YFVMVG DNP+++ F K + +++++ +FIAHA+LDL+DE +W +++MY
Sbjct: 1 MSGSFYFVMVGHHDNPVFELEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
LKT+DKFN+ VSAFVT ++F+M+HD + E+GIK FF VY+L++K+++NPFY++N P
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFNDVYDLYVKFAMNPFYEVNAP 120
Query: 119 INSTYFDSKVNFLGRKFL 136
I ST F+ KV FLG+K L
Sbjct: 121 IRSTAFERKVQFLGKKHL 138
>sp|Q9CQP2|TPPC2_MOUSE Trafficking protein particle complex subunit 2 OS=Mus musculus
GN=Trappc2 PE=1 SV=1
Length = 140
Score = 154 bits (390), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/138 (50%), Positives = 106/138 (76%), Gaps = 2/138 (1%)
Query: 1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
M+ +YFV+VG DNP+++ F K + +++++ +FIAHA+LDL+DE +W +++MY
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
LKT+DKFN+ VSAFVT ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120
Query: 119 INSTYFDSKVNFLGRKFL 136
I S+ FD KV FLG+K L
Sbjct: 121 IRSSAFDRKVQFLGKKHL 138
>sp|Q28IG8|TPPC2_XENTR Trafficking protein particle complex subunit 2 OS=Xenopus
tropicalis GN=trappc2 PE=2 SV=1
Length = 140
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 68/138 (49%), Positives = 105/138 (76%), Gaps = 2/138 (1%)
Query: 1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
M+ +YFV+VG DNP+++ F K + +++++ +FIAHA+LDL+DE +W +++MY
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPQGKTESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
LKT+DKFN+ VSAFVT ++F+M+HD + E+GIK FF Y+L+IK+++NPFY+IN+P
Sbjct: 61 LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFNEAYDLYIKFAMNPFYEINSP 120
Query: 119 INSTYFDSKVNFLGRKFL 136
+ ST FD K+ FLG+K L
Sbjct: 121 LRSTAFDRKIQFLGKKHL 138
>sp|Q9VUZ1|TPPC2_DROME Probable trafficking protein particle complex subunit 2
OS=Drosophila melanogaster GN=CG5161 PE=2 SV=2
Length = 139
Score = 151 bits (382), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 69/134 (51%), Positives = 100/134 (74%), Gaps = 2/134 (1%)
Query: 5 YYFVMVGREDNPLYQRGFSC--KEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTI 62
YYFV+VG+ DNP+Y++ FS KE ++++ +FIAHA+LDL+DE W+T +M LK+I
Sbjct: 4 YYFVIVGQNDNPIYEKEFSTVNKELRKEDHRHLTQFIAHAALDLVDEHKWKTANMQLKSI 63
Query: 63 DKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINST 122
D+FN VSAF+T + ++F++VHD+KN+EGIK FF +Y+ +IK S+N FY+INTPI S
Sbjct: 64 DRFNQWFVSAFITASQIRFIIVHDNKNDEGIKNFFNEMYDTYIKNSMNAFYRINTPIKSP 123
Query: 123 YFDSKVNFLGRKFL 136
F+ K GRK+L
Sbjct: 124 MFEKKSEIFGRKYL 137
>sp|Q5ZKP4|TPPC2_CHICK Trafficking protein particle complex subunit 2 OS=Gallus gallus
GN=TRAPPC2 PE=2 SV=2
Length = 140
Score = 147 bits (371), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 66/138 (47%), Positives = 104/138 (75%), Gaps = 2/138 (1%)
Query: 1 MANRYYFVMVGREDNPLYQRGF--SCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
M+ +YFV+VG DNP+++ F K + +++++ +FIAHA+LDL+DE +W +++MY
Sbjct: 1 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60
Query: 59 LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
LKT+DKFN+ VSAF ++F+M+HD + E+GIK FF VY+L+IK+++NPFY++N+P
Sbjct: 61 LKTVDKFNEWFVSAFAFVLHMRFIMLHDVRQEDGIKNFFNDVYDLYIKFAMNPFYELNSP 120
Query: 119 INSTYFDSKVNFLGRKFL 136
I S+ F+ KV FLG+K L
Sbjct: 121 IRSSAFERKVQFLGKKHL 138
>sp|Q54RV6|TPPC2_DICDI Trafficking protein particle complex subunit 2 OS=Dictyostelium
discoideum GN=trappc2 PE=3 SV=1
Length = 133
Score = 132 bits (332), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 60/129 (46%), Positives = 92/129 (71%), Gaps = 2/129 (1%)
Query: 7 FVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFN 66
F+++G+ DNPLY+ F + Y ++IAH SLD+++E VW++++MYLK IDKFN
Sbjct: 6 FLIIGKNDNPLYEIEFPI--TVQKKETYVLQYIAHGSLDIVEEHVWKSNNMYLKIIDKFN 63
Query: 67 DMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDS 126
+ +S+FVT +KFL++H+ K+E+ IK FF V++L++K LNPFY+ N PI ST FD+
Sbjct: 64 KVQISSFVTAGHIKFLLLHEKKDEDAIKNFFVEVHDLYLKILLNPFYEYNKPITSTAFDA 123
Query: 127 KVNFLGRKF 135
KV +G K+
Sbjct: 124 KVRKIGTKY 132
>sp|A7RVK7|TPPC2_NEMVE Probable trafficking protein particle complex subunit 2
OS=Nematostella vectensis GN=v1g94938 PE=3 SV=1
Length = 153
Score = 130 bits (328), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 97/151 (64%), Gaps = 15/151 (9%)
Query: 1 MANRYYFVMVGREDNPLYQRGFSCKEAND-NENKYYYEFIAHASLDLLDEQVWQTDHMYL 59
M YYF +VG DNP+Y++ F+ + D N++++ +FI HA+LDL+DE +W T MYL
Sbjct: 1 MLGNYYFAIVGHYDNPVYEKEFNQQMKMDSNDHRHLNQFIVHAALDLVDESMWGTTGMYL 60
Query: 60 KTIDKFNDMMVSAFVTP--------------TGVKFLMVHDSKNEEGIKKFFTSVYELFI 105
K++DKFN+ VSAF P + ++F+M+HD KN++GIK FF+ VYE FI
Sbjct: 61 KSVDKFNEWFVSAFDPPLSWIIDPQFFLDLTSWMRFMMLHDVKNDDGIKNFFSDVYETFI 120
Query: 106 KYSLNPFYKINTPINSTYFDSKVNFLGRKFL 136
K +NPFY+IN+ I S FD KV +K +
Sbjct: 121 KVLMNPFYEINSKIKSANFDKKVLLAAKKHI 151
>sp|O02173|TPPC2_CAEEL Probable trafficking protein particle complex subunit 2
OS=Caenorhabditis elegans GN=sedl-1 PE=1 SV=1
Length = 141
Score = 125 bits (315), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/141 (41%), Positives = 92/141 (65%), Gaps = 4/141 (2%)
Query: 1 MANR-YYFVMVGREDNPLYQRGFSCKEANDNEN---KYYYEFIAHASLDLLDEQVWQTDH 56
MA + +YF ++G D P+++ F E E+ ++ +I HA+LD++DE T
Sbjct: 1 MATKEFYFAIIGHCDQPIFEMDFPVGEKKTKESEGTRHLNHYIGHAALDIVDEHALTTSQ 60
Query: 57 MYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKIN 116
MYLK +DKFN+ VSAFVT + ++F+M+H + +EGIK+FF +YE +IK+++NPFY+I+
Sbjct: 61 MYLKMVDKFNEWYVSAFVTASRIRFIMLHTHRADEGIKQFFQEMYETYIKHAMNPFYEID 120
Query: 117 TPINSTYFDSKVNFLGRKFLT 137
I S F+ K GRK+L+
Sbjct: 121 DVIESPAFEQKATLYGRKYLS 141
>sp|Q9USZ5|TRS20_SCHPO Transport protein particle 20 kDa subunit OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs20 PE=3 SV=1
Length = 136
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 51/133 (38%), Positives = 93/133 (69%), Gaps = 2/133 (1%)
Query: 6 YFVMVGREDNPLYQ--RGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTID 63
Y ++G +DNP+Y+ G ++ + + N + +FI H+SLD++D+ W ++ Y+KTID
Sbjct: 4 YAAIIGTKDNPVYELEMGPINEKLDRSLNSHLNQFIVHSSLDIVDQLQWTSNAFYMKTID 63
Query: 64 KFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTY 123
+F++M +SA+VTP+ ++F+++H +++ + IK FF ++EL+IK ++PFY+ N PI S
Sbjct: 64 QFHEMYISAYVTPSNMRFMLLHQNQSADNIKLFFQELHELYIKTLMSPFYQPNQPIRSQA 123
Query: 124 FDSKVNFLGRKFL 136
FD KV + R++L
Sbjct: 124 FDLKVRSIARRYL 136
>sp|P38334|TRS20_YEAST Trafficking protein particle complex subunit 20 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TRS20 PE=1
SV=1
Length = 175
Score = 93.2 bits (230), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 89/171 (52%), Gaps = 39/171 (22%)
Query: 6 YFVMVGREDNPLYQRGFSCKEAND---NENKYYYEFIAHASLDLLDEQVWQ--------- 53
YF ++G++DNP+Y+ F+ E + K FI HASLD++++ WQ
Sbjct: 4 YFAIIGKKDNPVYEIEFTNAENPQGFPQDLKELNPFILHASLDIVEDLQWQINPTSQLNG 63
Query: 54 --------------------TDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSK----- 88
TD+ YL +D F + ++A+++ +G+KF+M+H +
Sbjct: 64 NGGNGSNGGGGFLRSRAVNNTDNCYLGKVDHFYGLAITAYISYSGMKFVMIHGNSANSSV 123
Query: 89 --NEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFLT 137
++ ++ F+ V+EL++K +NPFYKI PI S FDS+V L RK L+
Sbjct: 124 VIDDNNMRSFYQEVHELYVKTLMNPFYKITDPIRSPAFDSRVRTLARKHLS 174
>sp|Q54CU7|TPC2L_DICDI Trafficking protein particle complex subunit 2-like protein
OS=Dictyostelium discoideum GN=trappc2l PE=3 SV=1
Length = 140
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 72/139 (51%), Gaps = 11/139 (7%)
Query: 1 MANRYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQ----TDH 56
M +VG+ +NPL+ + FS ++N+ K +Y I H SLD+++++
Sbjct: 1 MKKIVCVAIVGKGNNPLFIQDFSSSITDENKLKLHY--IVHCSLDIIEDKPGSNKKLPSD 58
Query: 57 MYLKTIDKFNDMMVSAFVTPTGVKFLMV----HDSKNEEGIKKFFTSVYELFIKYSLNPF 112
MYL + D V ++T T +KF++V D K+ + +K FF + LFI + NPF
Sbjct: 59 MYLGLLYPTEDYKVYGYLTNTKIKFIIVVLDTSDIKDSD-LKLFFKRLQTLFINTTSNPF 117
Query: 113 YKINTPINSTYFDSKVNFL 131
YK N+ + S F +V L
Sbjct: 118 YKPNSKVESKKFLQEVTNL 136
>sp|Q5M8X5|TPC2L_XENTR Trafficking protein particle complex subunit 2-like protein
OS=Xenopus tropicalis GN=trappc2l PE=2 SV=1
Length = 139
Score = 58.5 bits (140), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 63/134 (47%), Gaps = 17/134 (12%)
Query: 9 MVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQ-------VWQTDHMYLKT 61
++ +E+ PLY R + EN+ + + H SLD++DE+ V +YL
Sbjct: 7 VIAKENYPLYIR------STPTENQLKFHYTVHTSLDVVDEKISAMGKAVMDQRELYLGL 60
Query: 62 IDKFNDMMVSAFVTPTGVKFLMVHDSKN----EEGIKKFFTSVYELFIKYSLNPFYKINT 117
+ D V +VT + VKF+MV DS N + I+ F ++ + NPFY
Sbjct: 61 LYPTEDYKVYGYVTNSKVKFVMVVDSSNTSLRDNEIRSMFRKLHNSYTDVMCNPFYNPGD 120
Query: 118 PINSTYFDSKVNFL 131
PI S FD+ V +
Sbjct: 121 PIQSRAFDNTVTSM 134
>sp|B5FXJ6|TPC2L_TAEGU Trafficking protein particle complex subunit 2-like protein
OS=Taeniopygia guttata GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 56.2 bits (134), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 7 FVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTD-------HMYL 59
++ +E+ PLY R EN+ + + H SLD++DE++ +YL
Sbjct: 5 IAVIAKENYPLYIRSVP------TENELKFHYTVHTSLDVVDEKISAMGKALVDQRELYL 58
Query: 60 KTIDKFNDMMVSAFVTPTGVKFLMVHDSKN----EEGIKKFFTSVYELFIKYSLNPFYKI 115
+ D V +VT + VKF+MV DS N + I+ F ++ + NPFY
Sbjct: 59 GLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDIMCNPFYNP 118
Query: 116 NTPINSTYFDSKVN 129
I+S FD+ VN
Sbjct: 119 GDRIHSRAFDTMVN 132
>sp|B2RYU6|TPC2L_RAT Trafficking protein particle complex subunit 2-like protein
OS=Rattus norvegicus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 17/133 (12%)
Query: 7 FVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTD-------HMYL 59
++ +E+ PLY R + EN+ + ++ H SLD++DE++ +YL
Sbjct: 5 IAVIAKENYPLYIR------STPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYL 58
Query: 60 KTIDKFNDMMVSAFVTPTGVKFLMVHDSKN----EEGIKKFFTSVYELFIKYSLNPFYKI 115
+ D V +VT + VKF+MV DS N + I+ F ++ + NPFY
Sbjct: 59 GLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNP 118
Query: 116 NTPINSTYFDSKV 128
I S FD+ V
Sbjct: 119 GDRIQSRAFDTMV 131
>sp|A6H7F7|TPC2L_BOVIN Trafficking protein particle complex subunit 2-like protein OS=Bos
taurus GN=TRAPPC2L PE=2 SV=1
Length = 139
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 17/131 (12%)
Query: 9 MVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTD-------HMYLKT 61
++ +E+ PLY R EN+ + ++ H SLD++DE++ +YL
Sbjct: 7 VIAKENYPLYIRSIP------TENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYLGL 60
Query: 62 IDKFNDMMVSAFVTPTGVKFLMVHDSKN----EEGIKKFFTSVYELFIKYSLNPFYKINT 117
+ D V +VT + VKF+MV DS N + I+ F ++ + NPFY
Sbjct: 61 LYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNPGD 120
Query: 118 PINSTYFDSKV 128
I S FD V
Sbjct: 121 RIQSRAFDGMV 131
>sp|B5XGE7|TPC2L_SALSA Trafficking protein particle complex subunit 2-like protein
OS=Salmo salar GN=trappc2l PE=2 SV=1
Length = 139
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 64/136 (47%), Gaps = 17/136 (12%)
Query: 7 FVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTD-------HMYL 59
++ +E+ PLY R + NE K++Y H SLD+++E++ +YL
Sbjct: 5 IAVIAKENYPLYIRSVPVQ----NELKFHYT--VHTSLDVVEEKISAVGKAMADQRELYL 58
Query: 60 KTIDKFNDMMVSAFVTPTGVKFLMVHDSKN----EEGIKKFFTSVYELFIKYSLNPFYKI 115
+ D V +VT + VKF++V DS N + I+ F ++ F NPFY
Sbjct: 59 GLLYPTEDYKVYGYVTNSKVKFVIVVDSSNTSLRDNEIRSMFRKLHNSFTDVMCNPFYNP 118
Query: 116 NTPINSTYFDSKVNFL 131
I S FDS V+ +
Sbjct: 119 GDTIQSKAFDSMVSAM 134
>sp|Q9JME7|TPC2L_MOUSE Trafficking protein particle complex subunit 2-like protein OS=Mus
musculus GN=Trappc2l PE=2 SV=1
Length = 139
Score = 52.8 bits (125), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 17/134 (12%)
Query: 7 FVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTD-------HMYL 59
++ +E+ PLY R + E++ + ++ H SLD++DE++ +YL
Sbjct: 5 IAVIAKENYPLYIR------STPTESELKFHYMVHTSLDVVDEKISAMGKALVDQRELYL 58
Query: 60 KTIDKFNDMMVSAFVTPTGVKFLMVHDSKN----EEGIKKFFTSVYELFIKYSLNPFYKI 115
+ D V +VT + VKF+MV DS N + I+ F ++ + NPFY
Sbjct: 59 GLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNP 118
Query: 116 NTPINSTYFDSKVN 129
I S FD+ V
Sbjct: 119 GDRIQSRAFDTMVT 132
>sp|Q9UL33|TPC2L_HUMAN Trafficking protein particle complex subunit 2-like protein OS=Homo
sapiens GN=TRAPPC2L PE=1 SV=1
Length = 140
Score = 50.4 bits (119), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 7 FVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTD-------HMYL 59
++ +E+ PLY R + EN+ + ++ H SLD++DE++ +YL
Sbjct: 5 IAVIAKENYPLYIR------STPTENELKFHYMVHTSLDVVDEKISAMGKALVDQRELYL 58
Query: 60 KTIDKFNDMMVSAFVTPTGVKFLMVHDSKN----EEGIKKFFTSVYELFIKYSLNPFYKI 115
+ D V +VT + VKF+MV DS N + I+ F ++ + NPFY
Sbjct: 59 GLLYPTEDYKVYGYVTNSKVKFVMVVDSSNTALRDNEIRSMFRKLHNSYTDVMCNPFYNP 118
Query: 116 NTPINST-YFDSKV 128
I S+ FD+ V
Sbjct: 119 GDRIQSSRAFDNMV 132
>sp|Q54UU1|TPPC4_DICDI Trafficking protein particle complex subunit 4 OS=Dictyostelium
discoideum GN=trappc4 PE=3 SV=1
Length = 135
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 70 VSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSKV 128
+ F T TG+KF ++ D N + +++ VYEL+ Y L NPFY+I I FD K+
Sbjct: 69 LQCFQTHTGIKFYVIAD-PNHQQLEELLHGVYELYTDYVLKNPFYEIEMQIRCDLFDYKL 127
Query: 129 NFL 131
N L
Sbjct: 128 NRL 130
>sp|Q9ES56|TPPC4_MOUSE Trafficking protein particle complex subunit 4 OS=Mus musculus
GN=Trappc4 PE=1 SV=1
Length = 219
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 72 AFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSKVNF 130
F T TG+KF+++ D + + GI +YE++ ++L NPFY + PI FD +
Sbjct: 146 CFQTLTGIKFVVLADPR-QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKL 204
>sp|Q69BT7|TPPC4_RAT Trafficking protein particle complex subunit 4 OS=Rattus norvegicus
GN=Trappc4 PE=2 SV=1
Length = 219
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 72 AFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSKVNF 130
F T TG+KF+++ D + + GI +YE++ ++L NPFY + PI FD +
Sbjct: 146 CFQTLTGIKFVVLADPR-QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKL 204
>sp|Q2TBL9|TPPC4_BOVIN Trafficking protein particle complex subunit 4 OS=Bos taurus
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 72 AFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSKVNF 130
F T TG+KF+++ D + + GI +YE++ ++L NPFY + PI FD +
Sbjct: 146 CFQTLTGIKFVVLADPR-QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKL 204
>sp|Q5R9J9|TPPC4_PONAB Trafficking protein particle complex subunit 4 OS=Pongo abelii
GN=TRAPPC4 PE=2 SV=1
Length = 219
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 72 AFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSKVNF 130
+ T TG+KF+++ D + + GI +YE++ ++L NPFY + PI FD +
Sbjct: 146 CYQTLTGIKFVVLADPR-QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKL 204
>sp|Q9Y296|TPPC4_HUMAN Trafficking protein particle complex subunit 4 OS=Homo sapiens
GN=TRAPPC4 PE=1 SV=1
Length = 219
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 72 AFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSKVNF 130
+ T TG+KF+++ D + + GI +YE++ ++L NPFY + PI FD +
Sbjct: 146 CYQTLTGIKFVVLADPR-QAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKL 204
>sp|O43041|TRS23_SCHPO Transport protein particle subunit trs23 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=trs23 PE=3 SV=1
Length = 132
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/131 (23%), Positives = 56/131 (42%), Gaps = 14/131 (10%)
Query: 5 YYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQ---TDHMYLKT 61
+ +++ R + ++QR F N+Y + + Q+ + + L
Sbjct: 2 HALIIINRAGSLIFQREFGSSPTALTPNEYLVLAGTIHGVHAISTQISPLPGSSGIQLLE 61
Query: 62 IDKFNDMMVSAFVTPTGVKFLMVHDSKNEEG---IKKFFTSVYELFIKYSL-NPFYKINT 117
FN ++ T TG+KF++ + K ++KF YEL+ Y L NPFY +
Sbjct: 62 AGTFNMHILQ---THTGMKFVLFTEKKTTNARLQLQKF----YELYSDYVLKNPFYTLEM 114
Query: 118 PINSTYFDSKV 128
PI FD ++
Sbjct: 115 PIKCQLFDEQL 125
>sp|Q5RBK9|TPC2L_PONAB Trafficking protein particle complex subunit 2-like protein
OS=Pongo abelii GN=TRAPPC2L PE=3 SV=1
Length = 109
Score = 34.3 bits (77), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 25/123 (20%)
Query: 7 FVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFN 66
++ +E+ PLY R + ENK + ++ H SLD++DE++
Sbjct: 5 IAVIAKENYPLYIR------STPTENKLKFHYMVHTSLDVVDEKI--------------- 43
Query: 67 DMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDS 126
M A V + +++ +++ + +K S ++ NPFY I S FD+
Sbjct: 44 SAMGKALVDQRELYLGLLYPTEDYKMFRKLHNSYTDVMC----NPFYNPGDRIQSRAFDN 99
Query: 127 KVN 129
V
Sbjct: 100 MVT 102
>sp|Q47XA7|HTPG_COLP3 Chaperone protein HtpG OS=Colwellia psychrerythraea (strain 34H /
ATCC BAA-681) GN=htpG PE=3 SV=1
Length = 653
Score = 30.0 bits (66), Expect = 4.4, Method: Composition-based stats.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 25 KEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMV 84
+E D ++ Y EF H S D D +W+ + + KT S PT F M
Sbjct: 261 REKADITDEEYKEFYKHVSHDFGDPLLWEHNRVEGKT------EYTSLLYVPTKAPFDM- 313
Query: 85 HDSKNEEGIKKFFTSVY 101
++ + + G+K F V+
Sbjct: 314 YNREKQHGLKLFVQRVF 330
>sp|Q3MHH4|SYQ_BOVIN Glutamine--tRNA ligase OS=Bos taurus GN=QARS PE=2 SV=1
Length = 775
Score = 30.0 bits (66), Expect = 4.5, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Query: 78 GVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFD 125
G+ FL D+ E+ KFFT++Y++ P YK+ S YFD
Sbjct: 296 GICFLRFDDTNPEKEEAKFFTAIYDMVAWLGYTP-YKVTYA--SDYFD 340
>sp|P30612|CP52P_CANTR Cytochrome P450 52C1 OS=Candida tropicalis GN=CYP52C1 PE=2 SV=1
Length = 505
Score = 28.9 bits (63), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 39/78 (50%), Gaps = 3/78 (3%)
Query: 22 FSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKF 81
F CK A + NK + E++ AS+ DE + + +Y + +F + VS F + T K
Sbjct: 30 FHCKPARISPNKSWLEYLGIASVVHADEMI-RKGGLYSEIDGRFKSLDVSTFKSITLGKT 88
Query: 82 LMVHDSKNEEGIKKFFTS 99
V +K+ E I+ ++
Sbjct: 89 TYV--TKDIENIRHILSA 104
>sp|Q28653|2A5D_RABIT Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
delta isoform OS=Oryctolagus cuniculus GN=PPP2R5D PE=2
SV=1
Length = 586
Score = 28.9 bits (63), Expect = 9.2, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 37 EFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKF 96
E+I H S D++ E ++ + + + +++ F + S+ PTG +F D E
Sbjct: 138 EYITH-SRDVVTEAIY-PEAVTMFSVNLFRTLPPSS--NPTGAEFDPEEDEPTLEAAWPH 193
Query: 97 FTSVYELFIKYSLNPFYKINTPINSTYFDSK 127
VYE F+++ +P ++ N I Y D K
Sbjct: 194 LQLVYEFFLRFLESPDFQPN--IAKKYIDQK 222
>sp|Q14738|2A5D_HUMAN Serine/threonine-protein phosphatase 2A 56 kDa regulatory subunit
delta isoform OS=Homo sapiens GN=PPP2R5D PE=1 SV=1
Length = 602
Score = 28.9 bits (63), Expect = 9.5, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 44/91 (48%), Gaps = 6/91 (6%)
Query: 37 EFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKF 96
E+I H S D++ E ++ + + + +++ F + S+ PTG +F D E
Sbjct: 154 EYITH-SRDVVTEAIY-PEAVTMFSVNLFRTLPPSS--NPTGAEFDPEEDEPTLEAAWPH 209
Query: 97 FTSVYELFIKYSLNPFYKINTPINSTYFDSK 127
VYE F+++ +P ++ N I Y D K
Sbjct: 210 LQLVYEFFLRFLESPDFQPN--IAKKYIDQK 238
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.138 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 53,986,132
Number of Sequences: 539616
Number of extensions: 2131889
Number of successful extensions: 4670
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 38
Number of HSP's that attempted gapping in prelim test: 4613
Number of HSP's gapped (non-prelim): 59
length of query: 139
length of database: 191,569,459
effective HSP length: 104
effective length of query: 35
effective length of database: 135,449,395
effective search space: 4740728825
effective search space used: 4740728825
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.8 bits)