Query psy3409
Match_columns 139
No_of_seqs 125 out of 629
Neff 7.2
Searched_HMMs 29240
Date Sat Aug 17 00:16:43 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3409.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3409hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2j3w_A Sedlin, trafficking pro 100.0 3.6E-46 1.2E-50 269.9 18.0 138 1-138 3-142 (142)
2 2j3t_C Trafficking protein par 100.0 1E-38 3.4E-43 231.6 15.1 132 3-136 2-138 (145)
3 3cue_C Transport protein parti 100.0 3.5E-35 1.2E-39 215.9 12.3 133 2-136 1-157 (159)
4 3pr6_A Trapp-associated protei 100.0 1.2E-33 3.9E-38 207.2 15.0 111 6-117 12-134 (162)
5 2j3t_D Trafficking protein par 100.0 3.4E-33 1.2E-37 213.7 12.8 126 7-137 84-211 (219)
6 3cue_A Transport protein parti 100.0 1.1E-31 3.6E-36 204.8 18.6 133 2-135 1-218 (219)
7 3kyq_A YKT6, synaptobrevin hom 93.1 1.9 6.7E-05 31.7 15.4 103 1-108 1-106 (199)
8 2nut_C Vesicle-trafficking pro 92.6 1.6 5.4E-05 31.8 10.2 76 60-136 52-128 (196)
9 2j3t_D Trafficking protein par 89.8 0.27 9.4E-06 37.1 3.6 23 1-24 1-23 (219)
10 4b93_A Vesicle-associated memb 89.6 4.5 0.00016 29.3 10.8 76 60-136 43-119 (189)
11 1w63_Q Adapter-related protein 83.5 9.3 0.00032 26.7 13.0 95 4-110 2-97 (158)
12 2vgl_S AP-2 complex subunit si 81.6 10 0.00035 25.9 12.8 94 4-109 2-96 (142)
13 1w63_M Adaptor-related protein 79.2 10 0.00034 30.7 8.5 88 4-108 3-95 (423)
14 3bw6_A Synaptobrevin homolog Y 79.2 13 0.00045 25.6 15.3 103 1-108 4-109 (144)
15 2vgl_M AP-2 complex subunit MU 77.4 27 0.00092 28.2 12.5 91 5-109 3-94 (435)
16 2vx8_A Nucleoporin-like protei 74.0 21 0.00072 25.4 10.9 86 6-108 47-133 (169)
17 3bua_E HSNM1B, DNA cross-LINK 72.8 0.99 3.4E-05 24.0 0.5 31 102-132 5-35 (36)
18 2wx3_A MRNA-decapping enzyme 1 72.6 2.5 8.4E-05 24.6 2.2 16 94-109 28-43 (51)
19 2wx4_A DCP1, decapping protein 61.6 3.1 0.0001 23.7 1.1 16 94-109 26-41 (46)
20 3tjz_C Coatomer subunit zeta-1 43.1 80 0.0027 21.8 12.3 92 4-108 13-105 (153)
21 4er8_A Tnparep for protein; pr 33.3 1.2E+02 0.0041 21.0 6.4 65 67-132 47-116 (165)
22 3cpt_A Mitogen-activated prote 30.8 1.4E+02 0.0046 20.8 9.5 39 2-44 36-74 (143)
23 4afi_A AP-3 complex subunit de 30.7 1.4E+02 0.0049 21.0 14.0 113 6-136 57-171 (173)
24 1skv_A ORF D-63, hypothetical 27.0 64 0.0022 19.6 3.1 33 90-124 15-47 (69)
25 2jsx_A Protein NAPD; TAT, proo 26.4 78 0.0027 20.2 3.7 35 67-102 31-65 (95)
26 1ytb_A Protein (tata binding p 22.4 2.1E+02 0.0073 20.3 6.3 50 55-106 127-176 (180)
27 2bkm_A Truncated hemoglobin fr 20.5 1.8E+02 0.0062 18.8 4.9 45 90-138 13-58 (128)
No 1
>2j3w_A Sedlin, trafficking protein particle complex protein 2; multisubunit tethering factor, trapp, palmitate, transport, lipoprotein; HET: PLM; 2.1A {Mus musculus} SCOP: d.110.4.3 PDB: 1h3q_A
Probab=100.00 E-value=3.6e-46 Score=269.89 Aligned_cols=138 Identities=50% Similarity=0.973 Sum_probs=127.1
Q ss_pred CCceEEEEEEcCCCCeeEEEecCCCCC--CCchhhHHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCC
Q psy3409 1 MANRYYFVMVGREDNPLYQRGFSCKEA--NDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTG 78 (139)
Q Consensus 1 m~~~~~~~Ii~~~~~ply~~~~~~~~~--~~~~~~~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~ 78 (139)
|+++++|+||||+|+|||+++|++..+ .+++.++..||++|+|||+++++.|+++++|||.++++++|++|||+|+||
T Consensus 3 M~~i~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~l~~~~i~hs~ldiv~~~~~~~~~~~l~~~~~~~~y~v~~~~T~tg 82 (142)
T 2j3w_A 3 MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMYLKTVDKFNEWFVSAFVTAGH 82 (142)
T ss_dssp CCCCEEEEEECTTSCEEEEEEECCSCCGGGHHHHHHHHHHHHHHHHHHHHHHGGGCSCSEEEEEEEETTEEEEEEECTTC
T ss_pred cceEEEEEEEeCCCCEEEEEecCCcCcCCccHHHHHHHHHHHHHHHHHHHHhcCCCCcceeEeeecccceEEEEEEcCCC
Confidence 788999999999999999999985322 123556777899999999999999998899999999999999999999999
Q ss_pred cEEEEEeccCChHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcChhHHHHHHHHHHhhccC
Q psy3409 79 VKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFLTG 138 (139)
Q Consensus 79 ~Kfvl~~~~~~~~~i~~~f~~i~~~Yv~~v~NPf~~~~~~I~s~~F~~~v~~~~~~~~~~ 138 (139)
+|||+++++++++++|++|++||++|+++++||||++++||+|+.||++|++++++|++|
T Consensus 83 ~Kfvl~~d~~~~~~i~~~~~~iy~~Y~~~v~NPfy~~~~pI~s~~Fd~~v~~~~~~~l~~ 142 (142)
T 2j3w_A 83 MRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSPIRSSAFDRKVQFLGKKHLLS 142 (142)
T ss_dssp CEEEEEESSCCHHHHHHHHHHHHHHHHHHHHSTTCCTTCCCCCHHHHHHHHHHHHHHTCC
T ss_pred cEEEEEeCCCCcHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHHhccC
Confidence 999999998569999999999999999999999999999999999999999999999864
No 2
>2j3t_C Trafficking protein particle complex subunit 1, trafficking protein particle complex subunit 3; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Mus musculus}
Probab=100.00 E-value=1e-38 Score=231.61 Aligned_cols=132 Identities=17% Similarity=0.262 Sum_probs=113.3
Q ss_pred ceEEEEEEcCCCCeeEEEecCCCC--CCCchhhHHHHHHHHHhHHHHHHhhccc-ccCCceeeeeeCCeeEEEEEcCCCc
Q psy3409 3 NRYYFVMVGREDNPLYQRGFSCKE--ANDNENKYYYEFIAHASLDLLDEQVWQT-DHMYLKTIDKFNDMMVSAFVTPTGV 79 (139)
Q Consensus 3 ~~~~~~Ii~~~~~ply~~~~~~~~--~~~~~~~~~~~f~~~~SLD~i~~~~~~~-~~~yL~~l~~~~~~~v~~y~T~t~~ 79 (139)
++++|+||||+|+|||+++|.... +...+++.++.++++.||+.|.+++++. +..+++++ ++++|++|+|+|+||+
T Consensus 2 ~i~~~~Ii~k~g~~iy~~~~~~~~~~~~~~~~~~~ll~g~~~Sl~~i~~klsp~~~~~~~~~~-~t~~ykl~~~~T~Tgi 80 (145)
T 2j3t_C 2 TVHNLYLFDRNGVCLHYSEWHRKKQAGIPKEEEYKLMYGMLFSIRSFVSKMSPLDMKDGFLSF-QTSRYKLHYYETPTGI 80 (145)
T ss_dssp CEEEEEEECTTSCEEEEEESSCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHCSSCCSSCEEEE-ECSSCEEEEEECTTSC
T ss_pred eEEEEEEEeCCCCEEEeeeecCCCcCCCCcchHHHHHHHHHHHHHHHHHHhCCCCCCCceEEE-ecCCEEEEEEEcCCCC
Confidence 589999999999999999997422 1121455566677777788888887654 56788776 7999999999999999
Q ss_pred EEEEEeccCChHHHHHHHHHHH-HHHHHhhh-CCCCCCCCCCcChhHHHHHHHHHHhhc
Q psy3409 80 KFLMVHDSKNEEGIKKFFTSVY-ELFIKYSL-NPFYKINTPINSTYFDSKVNFLGRKFL 136 (139)
Q Consensus 80 Kfvl~~~~~~~~~i~~~f~~i~-~~Yv~~v~-NPf~~~~~~I~s~~F~~~v~~~~~~~~ 136 (139)
||||++|+ +++++|++|++|| ++|+++++ ||||++++||+|+.||++|+++++++-
T Consensus 81 KFvl~td~-~~~~i~~~l~~iy~~lYv~~v~kNPfy~~~~pI~s~~Fd~~v~~~~~~~~ 138 (145)
T 2j3t_C 81 KVVMNTDL-GVGPIRDVLHHIYSALYVEFVVKNPLCPLGQTVQSELFRSRLDSYVRSLP 138 (145)
T ss_dssp EEEEEECT-TCCCCHHHHHHHHHTTHHHHTTTCTTSCTTSCCCCHHHHHHHHHHHTTST
T ss_pred EEEEEecC-CcchHHHHHHHHHHHHHHHHHhcCCCCCCCCceecHHHHHHHHHHHHhCc
Confidence 99999998 7889999999999 89999999 999999999999999999999999864
No 3
>3cue_C Transport protein particle 18 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.5e-35 Score=215.88 Aligned_cols=133 Identities=17% Similarity=0.275 Sum_probs=111.9
Q ss_pred CceEEEEEEcCCCCeeEEEecCCC--------CCCCchhhHHHHHHHHHhHHHHHHhhcccc-cCCceeeeeeCCeeEEE
Q psy3409 2 ANRYYFVMVGREDNPLYQRGFSCK--------EANDNENKYYYEFIAHASLDLLDEQVWQTD-HMYLKTIDKFNDMMVSA 72 (139)
Q Consensus 2 ~~~~~~~Ii~~~~~ply~~~~~~~--------~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~-~~yL~~l~~~~~~~v~~ 72 (139)
+++|||+||||+|+|||.++|... +....+++.++.++++.||+.|.+++++.+ ...+ ...++++|++|+
T Consensus 1 M~i~~~~Ii~r~g~~iy~~~~~~~~~~~~~~~~~~~~~~~~~ll~g~~~SL~~i~~kls~~~~~~~f-~~~~T~~ykl~~ 79 (159)
T 3cue_C 1 MGIYSFWIFDRHCNCIFDREWTLASNSASGTINSKQNEEDAKLLYGMIFSLRSITQKLSKGSVKNDI-RSISTGKYRVHT 79 (159)
T ss_dssp CCCCEEEEECSSSCEEECCCC-------------CCHHHHHHHHHHHHHHHHHHHHHSCCSSSCCCE-EEEECSSCBEEE
T ss_pred CeEEEEEEEcCCCceEEeeeeccccccccccccCCCCchHHHHHHHHHHHHHHHHHHhCCCCCCCCe-EEEeeCCEEEEE
Confidence 357999999999999999999631 012235567788999999999999998654 2334 456689999999
Q ss_pred EEcCCCcEEEEEeccCChHHHHHHHHHHHH-HHHHhhh-CC-----CCCCC--------CCCcChhHHHHHHHHHHhhc
Q psy3409 73 FVTPTGVKFLMVHDSKNEEGIKKFFTSVYE-LFIKYSL-NP-----FYKIN--------TPINSTYFDSKVNFLGRKFL 136 (139)
Q Consensus 73 y~T~t~~Kfvl~~~~~~~~~i~~~f~~i~~-~Yv~~v~-NP-----f~~~~--------~~I~s~~F~~~v~~~~~~~~ 136 (139)
|+|+||+||||++|. ++.++|.+|++||+ +|++||+ || ||+++ +||+|++||++|+++++++.
T Consensus 80 ~eT~TgiKFvl~td~-~~~~i~~~l~~iy~~lYv~yv~kNPl~~~~Fy~~~~~~~~~~~~pI~s~~Fd~~l~~~~~~~~ 157 (159)
T 3cue_C 80 YCTASGLWFVLLSDF-KQQSYTQVLQYIYSHIYVKYVSNNLLSPYDFAENENEMRGQGTRKITNRNFISVLESFLAPMV 157 (159)
T ss_dssp ECCSSCCEEEEECCS-SSSCTHHHHHHHHHHHHHHHHHSCTTSCCSCCCSCTTTTTSCCCCCCCHHHHHHHHHHTSCC-
T ss_pred EEeCCCCEEEEEeCC-CcchHHHHHHHHHHHHHHHHHHhCCCccccccccccccccccCcCcccHHHHHHHHHHHHhcc
Confidence 999999999999999 78899999999996 9999887 99 99999 99999999999999998764
No 4
>3pr6_A Trapp-associated protein TCA17; longin fold, vesicle tethering regulation, trapp complex, TR network, transport protein; 1.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-33 Score=207.17 Aligned_cols=111 Identities=22% Similarity=0.449 Sum_probs=95.7
Q ss_pred EEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhh--ccccc--CCceeeeeeCCeeEEEEE-cCCCcE
Q psy3409 6 YFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQV--WQTDH--MYLKTIDKFNDMMVSAFV-TPTGVK 80 (139)
Q Consensus 6 ~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~--~~~~~--~yL~~l~~~~~~~v~~y~-T~t~~K 80 (139)
+++||||+|+|||++.+++.+. +.+..+++||++|+|||+||+++ |.+++ +|||.++++++++||||+ |+||+|
T Consensus 12 FVaIIg~~n~PLyI~~~~~~~~-~~~~~Lk~~fi~hsSLDi~Ee~~~~~~s~~~~~~LglL~~~e~~~VYGy~iTnt~vK 90 (162)
T 3pr6_A 12 FVSLIDESDKPILIYVPNEAEN-EMNDVLKYNVLSNISLDYFESALVEWHSLDSKPLLKSIFQLEGVSVFAMLIKQTGLK 90 (162)
T ss_dssp EEEEECTTSCEEEEECCC--------CHHHHHHHHHHHHHHHHCTTCCCCCSSSSCCCEEEEEETTEEEEEEECTTTCCE
T ss_pred EEEEECCCCceeEEEeCCCccc-cccchhHHHHHHHHHHHHHhhhhhhccccccccccceEeecCCeEEEEEEEcCCceE
Confidence 7889999999999999985322 23456889999999999999999 76654 789999999999999997 999999
Q ss_pred EEEEeccC-----Ch--HHHHHHHHHHHHHHHHhhhCCCCCCCC
Q psy3409 81 FLMVHDSK-----NE--EGIKKFFTSVYELFIKYSLNPFYKINT 117 (139)
Q Consensus 81 fvl~~~~~-----~~--~~i~~~f~~i~~~Yv~~v~NPf~~~~~ 117 (139)
||++++.. +| ++||++|+++|++|++++|||||.+++
T Consensus 91 fVl~~d~~~~~~~~D~~~~Ik~~F~~vh~~Yvk~l~NPFy~~~d 134 (162)
T 3pr6_A 91 IVIGFEQKSLSGADDEFEAINQIFETVRKIYIRVKCNPLLVSGD 134 (162)
T ss_dssp EEEEEEGGGCCCCHHHHHHHHHHHHHHHHHHHHHHTCTTGGGSC
T ss_pred EEEEEccCCcccccchHHHHHHHHHHHHHHHHHHhcCCCCCCCc
Confidence 99999863 36 799999999999999999999999984
No 5
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=100.00 E-value=3.4e-33 Score=213.67 Aligned_cols=126 Identities=21% Similarity=0.355 Sum_probs=108.7
Q ss_pred EEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcccc-cCCceeeeeeCCeeEEEEEcCCCcEEEEEe
Q psy3409 7 FVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTD-HMYLKTIDKFNDMMVSAFVTPTGVKFLMVH 85 (139)
Q Consensus 7 ~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~-~~yL~~l~~~~~~~v~~y~T~t~~Kfvl~~ 85 (139)
..|+|++|+|||++.+..+. +++..+.+..++| |||+|++++|+.+ ...+.+ ..+++|++|||+|+||+||||++
T Consensus 84 ~~iigk~N~PLyir~f~~~l--~sn~~L~lag~lh-SLd~i~~klsp~~~s~g~~~-~~T~~ykl~~y~T~TgiKFVLlt 159 (219)
T 2j3t_D 84 EYLGNPANYPVSIRFGRPRL--TSNEKLMLASMFH-SLFAIGSQLSPEQGSSGIEM-LETDTFKLHCYQTLTGIKFVVLA 159 (219)
T ss_dssp HHTTCGGGCSEEEEEECCCC--CHHHHHHHHHHHH-HHHHHHHHTCSSSSCCSCSE-EEESSCEEEEEECTTSCEEEEEE
T ss_pred eeeecCCCCceEEEecCCCC--ChhHHHHHHHHHH-HHHHHHHHhCCCCCCCCeeE-EecCceEEEEEEcCCCCEEEEEe
Confidence 35789999999999998531 2333444445667 9999999999854 456745 46899999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHHHHHhhh-CCCCCCCCCCcChhHHHHHHHHHHhhcc
Q psy3409 86 DSKNEEGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSKVNFLGRKFLT 137 (139)
Q Consensus 86 ~~~~~~~i~~~f~~i~~~Yv~~v~-NPf~~~~~~I~s~~F~~~v~~~~~~~~~ 137 (139)
|+ +++++|++|++||++|+++++ ||||++++||+|+.||++|+++++++..
T Consensus 160 d~-~~~~ir~~l~~IyelYvd~V~kNPFY~~~~pI~s~~Fd~~v~~l~~~~~~ 211 (219)
T 2j3t_D 160 DP-RQAGIDSLLRKIYEIYSDFALKNPFYSLEMPIRCELFDQNLKLALEVAEK 211 (219)
T ss_dssp CT-TCCCHHHHHHHHHHHHHHHHTTCTTCCTTSCCCCHHHHHHHHHHHHHHTT
T ss_pred cC-CchHHHHHHHHHHHHHHHHhccCCCCCCCCccchHHHHHHHHHHHHHhhc
Confidence 99 788999999999999999988 9999999999999999999999999877
No 6
>3cue_A Transport protein particle 23 kDa subunit; membrane traffic, GEF, tethering complex, RAB activation, GU nucleotide exchange factor; HET: PLM; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-31 Score=204.84 Aligned_cols=133 Identities=23% Similarity=0.343 Sum_probs=111.8
Q ss_pred CceEEEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcccc--------------------------
Q psy3409 2 ANRYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTD-------------------------- 55 (139)
Q Consensus 2 ~~~~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~-------------------------- 55 (139)
+++++|+||||+|.+||.|+|.........++.+..+++..+|..|..++.+..
T Consensus 1 M~i~sl~IiNk~GglIY~r~~~~~~~~l~snd~l~lag~lhsv~ai~~~ltP~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 80 (219)
T 3cue_A 1 MAIETILVINKSGGLIYQRNFTNDEQKLNSNEYLILASTLHGVFAIASQLTPKALQLTQQTNIENTIPYIPYVGMSSNRS 80 (219)
T ss_dssp -CEEEEEEECTTSCEEEEEECSSCCCCSCHHHHHHHHHHHHHHHHHHHHTCCSCC-----------CCCCCSCCC-----
T ss_pred CeeEEEEEEeCCCCEEeehhhccCcCCCCcchhhhhhhhhHHHHHHHhhcCCCccccccccccccccccccccccccccc
Confidence 358999999999999999999843222345566677888889999999997532
Q ss_pred -----------------------------------cCCceeeeeeCCeeEEEEEcCCCcEEEEEeccCC-h---------
Q psy3409 56 -----------------------------------HMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKN-E--------- 90 (139)
Q Consensus 56 -----------------------------------~~yL~~l~~~~~~~v~~y~T~t~~Kfvl~~~~~~-~--------- 90 (139)
+..| ....+++|++|||+|+||+||||++++.. +
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~-~~~~Td~y~l~~f~T~TGiKFVlltd~~~~~~~~s~~~~~ 159 (219)
T 3cue_A 81 DTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGL-RQLCTDQFTMFIYQTLTGLKFVAISSSVMPQRQPTIATTD 159 (219)
T ss_dssp -----------------------CCSCCSCCCCCCSSSC-CEEEESSCEEEEEECTTSCEEEEEESSCC-----------
T ss_pred ccccccccccccccccccccccccccccccccccCCCce-EEEEeCCEEEEEEEcCCCCEEEEEecCCCccccccccccc
Confidence 1234 33558899999999999999999999843 2
Q ss_pred -------------HHHHHHHHHHHHHHHHhhh-CCCCCCCCCCcChhHHHHHHHHHHhh
Q psy3409 91 -------------EGIKKFFTSVYELFIKYSL-NPFYKINTPINSTYFDSKVNFLGRKF 135 (139)
Q Consensus 91 -------------~~i~~~f~~i~~~Yv~~v~-NPf~~~~~~I~s~~F~~~v~~~~~~~ 135 (139)
+++|++|++||++|+++|| ||||.+++||+|+.||.+|+++++++
T Consensus 160 ~~~~~~~~s~l~e~~ir~ff~~VYelYvd~VmkNPFY~~~~pI~S~~Fd~~V~~~~~~~ 218 (219)
T 3cue_A 160 KPDRPKSTSNLAIQIADNFLRKVYCLYSDYVMKDPSYSMEMPIRSNLFDEKVKKMVENL 218 (219)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHHHHHHSCTTCCTTSCCCCHHHHHHHHHHHHHH
T ss_pred ccccccccccchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccccHHHHHHHHHHHHhc
Confidence 8999999999999999999 99999999999999999999999976
No 7
>3kyq_A YKT6, synaptobrevin homolog YKT6; V-snare homolog, lipid binding, cytoplasmic vesicle, ER-GOLG transport, golgi apparatus, lipoprotein; HET: DPV; 2.44A {Rattus norvegicus}
Probab=93.07 E-value=1.9 Score=31.70 Aligned_cols=103 Identities=13% Similarity=0.139 Sum_probs=62.7
Q ss_pred CCceEEEEEEcCCCC-eeEEEecCCCCCCCchhhH-HHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCC
Q psy3409 1 MANRYYFVMVGREDN-PLYQRGFSCKEANDNENKY-YYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTG 78 (139)
Q Consensus 1 m~~~~~~~Ii~~~~~-ply~~~~~~~~~~~~~~~~-~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~ 78 (139)
|+-+|++.|+-+++. |+....-..-++..-=++- .-+|+...| ..+-+++.+. =+.....++|.+|.|....|
T Consensus 1 ~mk~~~~~v~~~~~~~~~~l~~~~dlssf~~f~r~sv~ef~~f~~-r~il~r~~~~----~r~s~~~~~y~fH~y~~~~g 75 (199)
T 3kyq_A 1 LMKLYSLSVFYKGEPKAVLLKAAYDVSSFSFFQRSSVQEFMTFTS-QLIVERSAKG----SRASVKEQEYLCHVYVRSDS 75 (199)
T ss_dssp CCCEEEEEEEEECSSCEEEEEEEECCTTSCTTTHHHHHHHHHHHH-HHHHHTSCTT----EEEEEECSSEEEEEEECTTS
T ss_pred CceEEEEEEEEcCCCCceEEeeecccccccceehHhHHHHHHHHH-HHHHhcCCCC----CeEEEEeCCEEEEEEEecCC
Confidence 888999999976544 4444332222221111121 124555443 3333444332 24556678999999999999
Q ss_pred cEEEEEeccC-ChHHHHHHHHHHHHHHHHhh
Q psy3409 79 VKFLMVHDSK-NEEGIKKFFTSVYELFIKYS 108 (139)
Q Consensus 79 ~Kfvl~~~~~-~~~~i~~~f~~i~~~Yv~~v 108 (139)
+-++.++|.. ...-.-.++++|.+.|....
T Consensus 76 l~yl~itd~~yp~r~AF~fL~ei~~eF~~~~ 106 (199)
T 3kyq_A 76 LAGVVIADSEYPSRVAFTLLEKVLDEFSKQV 106 (199)
T ss_dssp EEEEEEEETTSCHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9999999873 23344677888887776654
No 8
>2nut_C Vesicle-trafficking protein SEC22B; human copii SEC23/24 complexed with SEC22, protein transport; 2.30A {Homo sapiens} PDB: 2nup_C 3egd_C 3egx_C 1ifq_A
Probab=92.60 E-value=1.6 Score=31.77 Aligned_cols=76 Identities=11% Similarity=0.193 Sum_probs=53.4
Q ss_pred eeeeeeCCeeEEEEEcCCCcEEEEEeccC-ChHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcChhHHHHHHHHHHhhc
Q psy3409 60 KTIDKFNDMMVSAFVTPTGVKFLMVHDSK-NEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFL 136 (139)
Q Consensus 60 ~~l~~~~~~~v~~y~T~t~~Kfvl~~~~~-~~~~i~~~f~~i~~~Yv~~v~NPf~~~~~~I~s~~F~~~v~~~~~~~~ 136 (139)
+.....++|.+| |....|+-+++++|.. ...-.-.|+++|.+.|....-+-.-....|..-..|+..+.++.+.|-
T Consensus 52 r~s~~~~~y~fh-y~~~~gl~~l~i~d~~yp~r~af~fL~~i~~~F~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~ 128 (196)
T 2nut_C 52 RCTLEAGAMTFH-YIIEQGVCYLVLCEAAFPKKLAFAYLEDLHSEFDEQHGKKVPTVSRPYSFIEFDTFIQKTKKLYI 128 (196)
T ss_dssp EEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHTTTTTTCCSTTTTGGGHHHHHHHHTTTS
T ss_pred eEEEEeCCEEEE-EEeCCCeEEEEEEcCCcchHHHHHHHHHHHHHHHHhccchhccccCCCchHHHHHHHHHHHHHhc
Confidence 344557899888 8889999999999873 233456788888877776543322222335555689999999888774
No 9
>2j3t_D Trafficking protein particle complex subunit 4; trapp, palmitate, transport, lipoprotein, ER-golgi transport apparatus, protein transport; HET: PLM; 2.4A {Homo sapiens} PDB: 2zmv_A 2jsn_A
Probab=89.84 E-value=0.27 Score=37.15 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=19.9
Q ss_pred CCceEEEEEEcCCCCeeEEEecCC
Q psy3409 1 MANRYYFVMVGREDNPLYQRGFSC 24 (139)
Q Consensus 1 m~~~~~~~Ii~~~~~ply~~~~~~ 24 (139)
|+ +|++.||+|.|++||.++|..
T Consensus 1 m~-iy~~yi~~~~~~liy~~~~~~ 23 (219)
T 2j3t_D 1 MA-IFSVYVVNKAGGLIYQLDSYA 23 (219)
T ss_dssp -C-EEEEEEECTTSCEEEEEECC-
T ss_pred Ce-EEEEEEEecCCceEEecccCC
Confidence 44 899999999999999999983
No 10
>4b93_A Vesicle-associated membrane protein 7; endocytosis, exocytosis, snare; 2.00A {Mus musculus} PDB: 2dmw_A
Probab=89.59 E-value=4.5 Score=29.25 Aligned_cols=76 Identities=11% Similarity=0.090 Sum_probs=50.6
Q ss_pred eeeeeeCCeeEEEEEcCCCcEEEEEeccC-ChHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcChhHHHHHHHHHHhhc
Q psy3409 60 KTIDKFNDMMVSAFVTPTGVKFLMVHDSK-NEEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFL 136 (139)
Q Consensus 60 ~~l~~~~~~~v~~y~T~t~~Kfvl~~~~~-~~~~i~~~f~~i~~~Yv~~v~NPf~~~~~~I~s~~F~~~v~~~~~~~~ 136 (139)
+..+..++|.+| |....|+-+++++|.. ...-.-.||.+|.+.|....-+.-......-.+..|+..+.++.+.|-
T Consensus 43 k~s~~~~~y~fH-yl~~~gl~yl~i~d~~yp~r~af~fL~~i~~eF~~~~~~~~~~~~~~~~~~~f~~~l~~~~~~y~ 119 (189)
T 4b93_A 43 KLTYSHGNYLFH-YICQDRIVYLCITDDDFERSRAFSFLNEVKKRFQTTYGSRAQTALPYAMNSEFSSVLAAQLKHHS 119 (189)
T ss_dssp EEEEEETTEEEE-EEEETTEEEEEEEETTSCHHHHHHHHHHHHHHHHHHHGGGGGTCCTTTTHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCEEEE-EEEeCCeEEEEEEcCccCHHHHHHHHHHHHHHHHhhccccccccCCccccchhhHHHHHHHHhhh
Confidence 455677899999 8888999999999973 233456678888877765443221111112223568888888888774
No 11
>1w63_Q Adapter-related protein complex 1 sigma 1A subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=83.54 E-value=9.3 Score=26.71 Aligned_cols=95 Identities=13% Similarity=0.179 Sum_probs=53.9
Q ss_pred eEEEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCCcEEEE
Q psy3409 4 RYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLM 83 (139)
Q Consensus 4 ~~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~~Kfvl 83 (139)
+.++.|+|++|+|+..|.|.... +..+. .+. +.+-.++.+.+.. ...+-..++++ +.|..-.++-|++
T Consensus 2 I~~i~Il~~~Gk~~lsk~y~~~~---~~~~~--~~~-----~~~~~~i~~~~~~-~~~~i~~~~~~-~vy~~~~~Lyfv~ 69 (158)
T 1w63_Q 2 MRFMLLFSRQGKLRLQKWYLATS---DKERK--KMV-----RELMQVVLARKPK-MCSFLEWRDLK-VVYKRYASLYFCC 69 (158)
T ss_dssp EEEEEEECSSSCEEEEEESSCCC---HHHHH--HHH-----HHHHHHHHTSCSS-SCSEEEETTEE-EEEEEETTEEEEE
T ss_pred eEEEEEECCCCCEEEEEeCCCCC---HHHHH--HHH-----HHHHHHHhccCCC-CCCeEEECCEE-EEEEEECCEEEEE
Confidence 46889999999999999997421 11111 111 1111222211110 11223345544 5677778999999
Q ss_pred Eecc-CChHHHHHHHHHHHHHHHHhhhC
Q psy3409 84 VHDS-KNEEGIKKFFTSVYELFIKYSLN 110 (139)
Q Consensus 84 ~~~~-~~~~~i~~~f~~i~~~Yv~~v~N 110 (139)
+++. .++-.+-.+++.+.++.-+|.-|
T Consensus 70 ~~~~~~Nel~~le~L~~~vevl~~yf~~ 97 (158)
T 1w63_Q 70 AIEGQDNELITLELIHRYVELLDKYFGS 97 (158)
T ss_dssp EECSSSCHHHHHHHHHHHHHHHHHHHSS
T ss_pred EecCCCCHHHHHHHHHHHHHHHHHHHcc
Confidence 9876 24555566677766666666533
No 12
>2vgl_S AP-2 complex subunit sigma-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Mus musculus} SCOP: i.23.1.1 PDB: 2jkt_I 2jkr_I* 2xa7_S
Probab=81.61 E-value=10 Score=25.85 Aligned_cols=94 Identities=12% Similarity=0.162 Sum_probs=55.5
Q ss_pred eEEEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCCcEEEE
Q psy3409 4 RYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLM 83 (139)
Q Consensus 4 ~~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~~Kfvl 83 (139)
+.++.|+|++|+++..|.|.+.+ .+.+.. ..+.+-.++.+.+.. ...+...++++ +.|..-.++-|++
T Consensus 2 I~~i~i~~~~Gk~~l~k~y~~~~---~~~~~~-------~~~~f~~~v~~~~~~-~~~~~~~~~~~-~vy~~~~~Lyfv~ 69 (142)
T 2vgl_S 2 IRFILIQNRAGKTRLAKWYMQFD---DDEKQK-------LIEEVHAVVTVRDAK-HTNFVEFRNFK-IIYRRYAGLYFCI 69 (142)
T ss_dssp EEEEEEEETTSCEEEEEECSCCC---HHHHHH-------HHHHHHHHHHTCCTT-SCSEEEETTEE-EEEEEETTEEEEE
T ss_pred eEEEEEEcCCCCEEEEEeCCCCC---hhhhHH-------HHHHHHHHHhcCCCC-CCCEEEECCEE-EEEEEECCEEEEE
Confidence 46889999999999999997421 111111 122222333211110 11223345544 5677778999999
Q ss_pred Eecc-CChHHHHHHHHHHHHHHHHhhh
Q psy3409 84 VHDS-KNEEGIKKFFTSVYELFIKYSL 109 (139)
Q Consensus 84 ~~~~-~~~~~i~~~f~~i~~~Yv~~v~ 109 (139)
+++. .++-.+-.+++.+.++.-+|.-
T Consensus 70 ~~~~~~N~l~~le~L~~~ve~l~~yf~ 96 (142)
T 2vgl_S 70 CVDVNDNNLAYLEAIHNFVEVLNEYFH 96 (142)
T ss_dssp EECTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred EeCCCCCHHHHHHHHHHHHHHHHHHHc
Confidence 9875 3455566777777777777753
No 13
>1w63_M Adaptor-related protein complex 1, MU 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1
Probab=79.25 E-value=10 Score=30.68 Aligned_cols=88 Identities=8% Similarity=0.069 Sum_probs=52.4
Q ss_pred eEEEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcc----cccCCceeeeeeCCeeEEEEEcCCCc
Q psy3409 4 RYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQ----TDHMYLKTIDKFNDMMVSAFVTPTGV 79 (139)
Q Consensus 4 ~~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~----~~~~yL~~l~~~~~~~v~~y~T~t~~ 79 (139)
+.++.|++++|+++..|.|....+. . .++.+..++.. ...+ .+...+++ .+.|..-.++
T Consensus 3 I~~i~I~~~~Gk~~l~k~y~~~~~~--~-----------~~~~f~~~v~~~~~~~~~~---~~i~~~~~-~~vy~~~~~L 65 (423)
T 1w63_M 3 ASAVYVLDLKGKVLICRNYRGDVDM--S-----------EVEHFMPILMEKEEEGMLS---PILAHGGV-RFMWIKHNNL 65 (423)
T ss_dssp CCEEEEEETTTEECSCBCCSCSCTT--T-----------THHHHHHHHHHHHHTSCCC---SEEEETTE-EEEEEEETTE
T ss_pred eEEEEEECCCCCEEEEEecCCCCCh--H-----------HHHHHHHHHhhccccCCCC---CEEEECCE-EEEEEEECCE
Confidence 4688899999999999999742211 1 11222222211 1111 22334554 3566777899
Q ss_pred EEEEEecc-CChHHHHHHHHHHHHHHHHhh
Q psy3409 80 KFLMVHDS-KNEEGIKKFFTSVYELFIKYS 108 (139)
Q Consensus 80 Kfvl~~~~-~~~~~i~~~f~~i~~~Yv~~v 108 (139)
-|+++++. .++-.+-++++.+.++.-+|.
T Consensus 66 yfv~~~~~~~n~l~~le~L~~~v~~l~~yf 95 (423)
T 1w63_M 66 YLVATSKKNACVSLVFSFLYKVVQVFSEYF 95 (423)
T ss_dssp EEEEEESSCCCTHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 99999875 244555666666666666664
No 14
>3bw6_A Synaptobrevin homolog YKT6; YKT6P, farnesylation, vacuole fusion, snare, coiled coil, lipoprotein, membrane, phosphoprotein; 2.50A {Saccharomyces cerevisiae} PDB: 1h8m_A 1iou_A
Probab=79.17 E-value=13 Score=25.57 Aligned_cols=103 Identities=6% Similarity=0.070 Sum_probs=58.6
Q ss_pred CCceEEEEEEcC-CCCeeEEEecCCCCCCCchhh-HHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCC
Q psy3409 1 MANRYYFVMVGR-EDNPLYQRGFSCKEANDNENK-YYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTG 78 (139)
Q Consensus 1 m~~~~~~~Ii~~-~~~ply~~~~~~~~~~~~~~~-~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~ 78 (139)
|+-++++.|+-. ++.|+........++.+--++ -.-+|+...|=- |-+++.+.+ +.....++|.+|.+....|
T Consensus 4 ~Mkl~~~~v~r~~~~~~~~L~~~~d~s~f~ffqr~sv~ef~~~~ar~-i~~r~~~~~----R~sv~~~~y~fH~~~~~~g 78 (144)
T 3bw6_A 4 AMRIYYIGVFRSGGEKALELSEVKDLSQFGFFERSSVGQFMTFFAET-VASRTGAGQ----RQSIEEGNYIGHVYARSEG 78 (144)
T ss_dssp CCCEEEEEEEECCSSSCEEEEEEECCTTSCTTTTTHHHHHHHHHHHH-HHHHCCTTE----EEEEEETTEEEEEEECTTS
T ss_pred EEEEEEEEEEecCCCCCeEeEeeecccccChhhhhhHHHHHHHHHHH-HHhhCCCCc----eEEEEeCCEEEEEEEecCC
Confidence 345677766643 334666655442221111111 112343333333 333443322 4556678999999988899
Q ss_pred cEEEEEeccC-ChHHHHHHHHHHHHHHHHhh
Q psy3409 79 VKFLMVHDSK-NEEGIKKFFTSVYELFIKYS 108 (139)
Q Consensus 79 ~Kfvl~~~~~-~~~~i~~~f~~i~~~Yv~~v 108 (139)
+-+++++|.. ...-.=.+|++|.+-|.+..
T Consensus 79 l~~l~i~D~~yp~rvAF~~L~~i~~eF~~~y 109 (144)
T 3bw6_A 79 ICGVLITDKEYPVRPAYTLLNKILDEYLVAH 109 (144)
T ss_dssp EEEEEEEETTSCHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEEEECCCCChhHHHHHHHHHHHHHHHHc
Confidence 9999999973 23344667888887777653
No 15
>2vgl_M AP-2 complex subunit MU-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2jkr_M 2jkt_M 2bp5_M* 2xa7_M
Probab=77.44 E-value=27 Score=28.23 Aligned_cols=91 Identities=10% Similarity=0.109 Sum_probs=55.4
Q ss_pred EEEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCCcEEEEE
Q psy3409 5 YYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMV 84 (139)
Q Consensus 5 ~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~~Kfvl~ 84 (139)
.++.|++++|+++..|.|..... +. .++.+..++....+.-...+...+++ .+.|..-.++-|+++
T Consensus 3 ~~i~I~~~~Gk~~l~k~y~~~~~-----~~--------~~~~f~~~v~~~~~~~~~~ii~~~~~-~~vy~~~~~Lyfv~~ 68 (435)
T 2vgl_M 3 GGLFIYNHKGEVLISRVYRDDIG-----RN--------AVDAFRVNVIHARQQVRSPVTNIART-SFFHVKRSNIWLAAV 68 (435)
T ss_dssp CEEEEECTTCCEEEEEECSSSCC-----HH--------HHHHHHHHTTTCSSCCCCSEEEETTE-EEEEEEETTEEEEEE
T ss_pred EEEEEECCCCCEEEEEecCCCCC-----hh--------HHHHHHHHHhccccCCCCCEEEECCE-EEEEEEECCEEEEEE
Confidence 47889999999999999974211 11 12445544442211011123334554 466788889999999
Q ss_pred ecc-CChHHHHHHHHHHHHHHHHhhh
Q psy3409 85 HDS-KNEEGIKKFFTSVYELFIKYSL 109 (139)
Q Consensus 85 ~~~-~~~~~i~~~f~~i~~~Yv~~v~ 109 (139)
++. .++-.+-++++.+.++.-+|.-
T Consensus 69 ~~~~~n~l~~le~L~~~v~vl~~yf~ 94 (435)
T 2vgl_M 69 TKQNVNAAMVFEFLYKMCDVMAAYFG 94 (435)
T ss_dssp ESSCCCHHHHHHHHHHHHHHHHHHHS
T ss_pred ecCCCCHHHHHHHHHHHHHHHHHHHh
Confidence 875 2455556666776666666653
No 16
>2vx8_A Nucleoporin-like protein RIP, vesicle-associated membrane protein 7; endocytosis,exocytosis, endocytosis, exocytosis, acetylation, coiled coil; 2.2A {Homo sapiens} PDB: 2dmw_A
Probab=74.00 E-value=21 Score=25.37 Aligned_cols=86 Identities=12% Similarity=0.167 Sum_probs=51.3
Q ss_pred EEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCCcEEEEEe
Q psy3409 6 YFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVH 85 (139)
Q Consensus 6 ~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~~Kfvl~~ 85 (139)
.+++|.|.+.+|.+..-.. .+-+ -++ +.+-+++.+.+ =+.....++|.+|.+.. .|+-|++++
T Consensus 47 lYa~VaRG~~VLae~t~~~-----gnf~----~ia----k~ll~kl~~~~---~r~s~~~~~y~fHyl~~-ngl~yl~I~ 109 (169)
T 2vx8_A 47 LFAVVARGTTILAKHAWCG-----GNFL----EVT----EQILAKIPSEN---NKLTYSHGNYLFHYICQ-DRIVYLCIT 109 (169)
T ss_dssp CEEEEEETTEEEEEEESSC-----BSHH----HHH----HHHHTTSCSSC---EEEEEEETTEEEEEEEE-TTEEEEEEE
T ss_pred EEEEEEcCCEEEEEeccCC-----CCHH----HHH----HHHHhhCCCCC---CceEEEECCEEEEEEEE-CCEEEEEEE
Confidence 4566788888887764321 1111 111 22333333211 13445678999999884 699999999
Q ss_pred ccC-ChHHHHHHHHHHHHHHHHhh
Q psy3409 86 DSK-NEEGIKKFFTSVYELFIKYS 108 (139)
Q Consensus 86 ~~~-~~~~i~~~f~~i~~~Yv~~v 108 (139)
|.. .-.-.-.||++|.+.|.+..
T Consensus 110 D~~yp~r~AF~fLedI~~eF~~~y 133 (169)
T 2vx8_A 110 DDDFERSRAFSFLNEVKKRFQTTY 133 (169)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHh
Confidence 973 22345677788887776654
No 17
>3bua_E HSNM1B, DNA cross-LINK repair 1B protein; TRF2 TRFH domain dimerization domain apollo peptide, alternative splicing, cell cycle; HET: DNA; 2.50A {Homo sapiens}
Probab=72.83 E-value=0.99 Score=24.02 Aligned_cols=31 Identities=29% Similarity=0.369 Sum_probs=25.1
Q ss_pred HHHHHhhhCCCCCCCCCCcChhHHHHHHHHH
Q psy3409 102 ELFIKYSLNPFYKINTPINSTYFDSKVNFLG 132 (139)
Q Consensus 102 ~~Yv~~v~NPf~~~~~~I~s~~F~~~v~~~~ 132 (139)
.+-++|+.-|..-......|..||++|+...
T Consensus 5 ~LALKYLLTPv~~l~a~~Ssr~FD~QVEK~~ 35 (36)
T 3bua_E 5 GLALKYLLTPVNFFQAGYSSRRFDQQVEKYH 35 (36)
T ss_pred HHHHHHHhhhHHHHhcccchhhHHHHHHHhc
Confidence 4567888888777788889999999998754
No 18
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=72.56 E-value=2.5 Score=24.62 Aligned_cols=16 Identities=13% Similarity=0.461 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHhhh
Q psy3409 94 KKFFTSVYELFIKYSL 109 (139)
Q Consensus 94 ~~~f~~i~~~Yv~~v~ 109 (139)
.+|+++||++|++.+.
T Consensus 28 ~~Fl~~IHeAYl~sl~ 43 (51)
T 2wx3_A 28 SSFLSTLHEVYLQVLT 43 (51)
T ss_dssp HHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5789999999998765
No 19
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=61.61 E-value=3.1 Score=23.70 Aligned_cols=16 Identities=13% Similarity=0.252 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHhhh
Q psy3409 94 KKFFTSVYELFIKYSL 109 (139)
Q Consensus 94 ~~~f~~i~~~Yv~~v~ 109 (139)
.+|+++||++|+..+.
T Consensus 26 ~~Fl~~iHeAYl~sl~ 41 (46)
T 2wx4_A 26 KEFANKLHKAYLNGCS 41 (46)
T ss_dssp TTHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3688999999998764
No 20
>3tjz_C Coatomer subunit zeta-1; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus} PDB: 2hf6_A
Probab=43.08 E-value=80 Score=21.79 Aligned_cols=92 Identities=10% Similarity=0.212 Sum_probs=56.2
Q ss_pred eEEEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCCcEEEE
Q psy3409 4 RYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLM 83 (139)
Q Consensus 4 ~~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~~Kfvl 83 (139)
+.++.|+|++|+++..|-|...-. ..+.+....--++. +..+... .+...++++ ..|..-.++-|++
T Consensus 13 I~~ililn~~Gk~~lsK~Y~~~~~-~~~~~~~~e~~i~~-------~~~r~~~----~i~~~~~~~-~vy~~~~~Lyfv~ 79 (153)
T 3tjz_C 13 VKAILILDNDGDRLFAKYYDDTYP-SVKEQKAFEKNIFN-------KTHRTDS----EIALLEGLT-VVYKSSIDLYFYV 79 (153)
T ss_dssp EEEEEEECTTSCEEEEEECSSSSC-SHHHHHHHHHHHHH-------HHSSCCC----CEEEETTEE-EEEEECSSCEEEE
T ss_pred heEEEEECCCCCEEEEEeCCCCCC-CHHHHHHHHHHHHH-------HHhCCCC----CEEEECCEE-EEEEEECCEEEEE
Confidence 568999999999999999974100 11112111111111 1122211 233345654 5778888999999
Q ss_pred Eecc-CChHHHHHHHHHHHHHHHHhh
Q psy3409 84 VHDS-KNEEGIKKFFTSVYELFIKYS 108 (139)
Q Consensus 84 ~~~~-~~~~~i~~~f~~i~~~Yv~~v 108 (139)
+++. .++-.+-++++.+.++.-+|.
T Consensus 80 ~~~~~eNel~ile~L~~~ve~l~~yf 105 (153)
T 3tjz_C 80 IGSSYENELMLMTVLNCLFDSLSQML 105 (153)
T ss_dssp EEETTSCHHHHHHHHHHHHHHHHHHH
T ss_pred EEcCCCChHHHHHHHHHHHHHHHHHh
Confidence 9876 356667788888888777775
No 21
>4er8_A Tnparep for protein; protein-DNA complex, guide sequence, catalytic tyrosine, RNA recognition motif, transposase, HUH motif, DNA binding PROT complex; HET: DNA; 2.60A {Escherichia coli}
Probab=33.30 E-value=1.2e+02 Score=20.98 Aligned_cols=65 Identities=9% Similarity=0.085 Sum_probs=45.4
Q ss_pred CeeEEEEE-cCCCcEEEEEeccCChHHHHHHHHHHHHHHHHhhh-CCCCCCC---CCCcChhHHHHHHHHH
Q psy3409 67 DMMVSAFV-TPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSL-NPFYKIN---TPINSTYFDSKVNFLG 132 (139)
Q Consensus 67 ~~~v~~y~-T~t~~Kfvl~~~~~~~~~i~~~f~~i~~~Yv~~v~-NPf~~~~---~~I~s~~F~~~v~~~~ 132 (139)
.+.|+||+ .|..+=+|+.... .+.++..+++.+...|.+..- .++.+.. ..|+++..-.++-+++
T Consensus 47 ~~~i~A~vlMpNH~Hll~~~p~-~~~~ls~~~~~~k~~~~~~~~~~~~WQ~ry~~~~i~~e~~l~~~~~YI 116 (165)
T 4er8_A 47 PFEINAWVVLPEHMHCIWTLPE-GDDDFSSRWREIKKQFTHACGLKNIWQPRFWEHAIRNTKDYRHHVDYI 116 (165)
T ss_dssp CCEEEEEEECSSEEEEEEECCT-TCCCHHHHHHHHHHHHHHHTTCSSCBCSSCEEEECCSHHHHHHHHHHH
T ss_pred CcEEEEEEEcCCceEEEEEeCC-cchhHHHHHHHHHHHhHHhcccCcCcccCccceEECCHHHHHHHHHHH
Confidence 57899995 6888887776554 456788899999888888876 5666642 4677766555544444
No 22
>3cpt_A Mitogen-activated protein kinase kinase 1- interacting protein 1; scaffold, complex, alpha/beta, endosome, membrane, lysosome; 1.90A {Homo sapiens} SCOP: d.110.7.1 PDB: 1sko_A 2zl1_A 1vet_A 1veu_A
Probab=30.76 E-value=1.4e+02 Score=20.82 Aligned_cols=39 Identities=15% Similarity=0.167 Sum_probs=27.7
Q ss_pred CceEEEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhH
Q psy3409 2 ANRYYFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASL 44 (139)
Q Consensus 2 ~~~~~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SL 44 (139)
.|++++.|-+|+|.||....-++. ++.+.+-+|+.-.++
T Consensus 36 ~Gl~aI~ItDrDGVpi~kv~~~~~----~e~~~r~s~lsTf~~ 74 (143)
T 3cpt_A 36 EGLHAIVVSDRDGVPVIKVANDNA----PEHALRPGFLSTFAL 74 (143)
T ss_dssp TTEEEEEEECTTSCEEEEEECTTS----CGGGGSHHHHHHHHH
T ss_pred CCeEEEEEECCCCcEEEEecCCCC----chhhcccchhhhHHH
Confidence 468999999999999998876642 344555566665444
No 23
>4afi_A AP-3 complex subunit delta-1, vesicle-associated protein 7; endocytosis, exocytosis, clathrin adaptor, chimera, fusion P; 2.80A {Homo sapiens}
Probab=30.66 E-value=1.4e+02 Score=21.02 Aligned_cols=113 Identities=12% Similarity=0.153 Sum_probs=62.8
Q ss_pred EEEEEcCCCCeeEEEecCCCCCCCchhhHHHHHHHHHhHHHHHHhhcccccCCceeeeeeCCeeEEEEEcCCCcEEEEEe
Q psy3409 6 YFVMVGREDNPLYQRGFSCKEANDNENKYYYEFIAHASLDLLDEQVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVH 85 (139)
Q Consensus 6 ~~~Ii~~~~~ply~~~~~~~~~~~~~~~~~~~f~~~~SLD~i~~~~~~~~~~yL~~l~~~~~~~v~~y~T~t~~Kfvl~~ 85 (139)
..+.|.|...+|.+....+ + + |. .+....+.+.+..-=+.....++|.+|... -.|+-++.++
T Consensus 57 ~Ya~VArg~tiLAE~t~~~--g---n------f~-----~va~~iL~kip~~~~r~t~~~~~y~fHyl~-~dgl~yl~i~ 119 (173)
T 4afi_A 57 LFAVVARGTTILAKHAWCG--G---N------FL-----EVTEQILAKIPSENNKLTYSHGNYLFHYIC-QDRIVYLCIT 119 (173)
T ss_dssp EEEEEEETTEEEEEEESSC--C---C------HH-----HHHHHHHTTSCSSSEEEEEEETTEEEEEEE-ETTEEEEEEE
T ss_pred EEEEEECCCEEEEEccCCC--C---C------HH-----HHHHHHHHhCCCCCCeEEEEECCEEEEEEE-ECCEEEEEEE
Confidence 4445678888888776542 1 1 11 112222222211112344556888777776 5899999999
Q ss_pred ccCC-hHHHHHHHHHHHHHHHHhhhCCCCCCCCCCc-ChhHHHHHHHHHHhhc
Q psy3409 86 DSKN-EEGIKKFFTSVYELFIKYSLNPFYKINTPIN-STYFDSKVNFLGRKFL 136 (139)
Q Consensus 86 ~~~~-~~~i~~~f~~i~~~Yv~~v~NPf~~~~~~I~-s~~F~~~v~~~~~~~~ 136 (139)
|..- -.-.-.||++|.+.|.+.--+-.-. ..|-. +..|.+.+++..+.|-
T Consensus 120 D~~~~rr~aF~FLedI~~eF~~~yg~~~~t-a~pya~~~eF~~~L~~~M~~yn 171 (173)
T 4afi_A 120 DDDFERSRAFSFLNEVKKRFQTTYGSRAQT-ALPYAMNSEFSSVLAAQLKHHS 171 (173)
T ss_dssp ETTSCHHHHHHHHHHHHHHHHHHHGGGGGT-CCTTTTHHHHHHHHHHHHHHHH
T ss_pred CCccChhHHHHHHHHHHHHHHHHhchhhhh-ccCcchhHHHHHHHHHHHHHhc
Confidence 9732 2344667777776666543221111 11111 3478899998887663
No 24
>1skv_A ORF D-63, hypothetical 7.5 kDa protein; sulfolobus spindle virus, SSV, archaeal, crenarchaeal, helix-turn-helix, four helix bundle; 2.60A {Sulfolobus virus 1} SCOP: a.30.5.1
Probab=27.00 E-value=64 Score=19.57 Aligned_cols=33 Identities=15% Similarity=0.371 Sum_probs=24.9
Q ss_pred hHHHHHHHHHHHHHHHHhhhCCCCCCCCCCcChhH
Q psy3409 90 EEGIKKFFTSVYELFIKYSLNPFYKINTPINSTYF 124 (139)
Q Consensus 90 ~~~i~~~f~~i~~~Yv~~v~NPf~~~~~~I~s~~F 124 (139)
++++|.++.-||++=++.+.+-- +.+.++-..|
T Consensus 15 D~diReLLSlvheIKID~It~n~--~kekvekAlf 47 (69)
T 1skv_A 15 DEDVRELLSLIHEIKIDRITGNM--DKQKLGKAYF 47 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCS--CCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHheeeeccCC--CHHHHHHHHH
Confidence 67999999999999999999543 4444544444
No 25
>2jsx_A Protein NAPD; TAT, proofreading, cytoplasm, chaperone; NMR {Escherichia coli K12} PDB: 2pq4_A
Probab=26.35 E-value=78 Score=20.18 Aligned_cols=35 Identities=20% Similarity=0.356 Sum_probs=24.5
Q ss_pred CeeEEEEEcCCCcEEEEEeccCChHHHHHHHHHHHH
Q psy3409 67 DMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYE 102 (139)
Q Consensus 67 ~~~v~~y~T~t~~Kfvl~~~~~~~~~i~~~f~~i~~ 102 (139)
+-.+|+-...+| |+|+..+..+.+++...+++|..
T Consensus 31 gvEi~~~~~~~G-kiVV~iEa~~~~~l~~~i~~I~~ 65 (95)
T 2jsx_A 31 GCEVAVSDAPSG-QLIVVVEAEDSETLIQTIESVRN 65 (95)
T ss_dssp TEEEEEEETTTT-EEEEEEEESSHHHHHHHHHHHTT
T ss_pred CeEEEEecCCCC-CEEEEEEeCCHHHHHHHHHHHhc
Confidence 335555444566 99999988677777777777654
No 26
>1ytb_A Protein (tata binding protein (TBP)); protein-DNA complex, transcription/DNA complex; HET: DNA; 1.80A {Saccharomyces cerevisiae} SCOP: d.129.1.1 d.129.1.1 PDB: 1ngm_A* 1tba_B 1nh2_A* 1ytf_A* 1tbp_A 1qna_A* 1qn3_A* 1qn5_A* 1qn6_A* 1qn7_A* 1qn8_A* 1qn9_A* 1qn4_A* 1qnb_A* 1qnc_A* 1qne_A* 1vok_A 1vol_B* 1vto_A* 1vtl_E* ...
Probab=22.42 E-value=2.1e+02 Score=20.30 Aligned_cols=50 Identities=16% Similarity=0.355 Sum_probs=36.2
Q ss_pred ccCCceeeeeeCCeeEEEEEcCCCcEEEEEeccCChHHHHHHHHHHHHHHHH
Q psy3409 55 DHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIK 106 (139)
Q Consensus 55 ~~~yL~~l~~~~~~~v~~y~T~t~~Kfvl~~~~~~~~~i~~~f~~i~~~Yv~ 106 (139)
++.|=|.+++..+-++...+=+|| | |+++..++.++++.-++.||..-.+
T Consensus 127 PE~fPGliyR~~~pkv~~lIF~SG-k-ivitGak~~~~~~~a~~~i~p~L~~ 176 (180)
T 1ytb_A 127 PELFPGLIYRMVKPKIVLLIFVSG-K-IVLTGAKQREEIYQAFEAIYPVLSE 176 (180)
T ss_dssp TTTCSSEEEECSSSCCEEEECTTS-E-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CccCCcEEEEeCCCcEEEEEecCC-e-EEEEecCCHHHHHHHHHHHHHHHHH
Confidence 355667888888888887777777 4 3444444778999999999966443
No 27
>2bkm_A Truncated hemoglobin from geobacillus stearothermophilus; hypothetical protein, oxygen transport, transport, oxygen storage; HET: HEM; 1.5A {Geobacillus stearothermophilus}
Probab=20.46 E-value=1.8e+02 Score=18.75 Aligned_cols=45 Identities=22% Similarity=0.330 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHH-HHHHHhhhCCCCCCCCCCcChhHHHHHHHHHHhhccC
Q psy3409 90 EEGIKKFFTSVY-ELFIKYSLNPFYKINTPINSTYFDSKVNFLGRKFLTG 138 (139)
Q Consensus 90 ~~~i~~~f~~i~-~~Yv~~v~NPf~~~~~~I~s~~F~~~v~~~~~~~~~~ 138 (139)
++.|+.+....| .+..+-...|++. .+-+....++.+....+++|
T Consensus 13 ~~~i~~lv~~FY~~v~~Dp~l~~~F~----~d~~~~~~~l~~Fl~~~~GG 58 (128)
T 2bkm_A 13 EETVAKLVEAFYRRVAAHPDLRPIFP----DDLTETAHKQKQFLTQYLGG 58 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCTTTGGGSC----SCCHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHhcCHHHHHHCc----cCHHHHHHHHHHHHHHHcCC
Confidence 567888888888 5566666788876 24566777777777777765
Done!