RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3409
         (139 letters)



>d2j3wa1 d.110.4.3 (A:1-140) Sedlin (SEDL) {Mouse (Mus musculus)
           [TaxId: 10090]}
          Length = 140

 Score =  145 bits (368), Expect = 1e-46
 Identities = 70/139 (50%), Positives = 106/139 (76%), Gaps = 2/139 (1%)

Query: 1   MANRYYFVMVGREDNPLYQRGFSC--KEANDNENKYYYEFIAHASLDLLDEQVWQTDHMY 58
           M+  +YFV+VG  DNP+++  F    K  + +++++  +FIAHA+LDL+DE +W +++MY
Sbjct: 1   MSGSFYFVIVGHHDNPVFEMEFLPPGKAESKDDHRHLNQFIAHAALDLVDENMWLSNNMY 60

Query: 59  LKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELFIKYSLNPFYKINTP 118
           LKT+DKFN+  VSAFVT   ++F+M+HD + E+GIK FFT VY+L+IK+++NPFY+ N+P
Sbjct: 61  LKTVDKFNEWFVSAFVTAGHMRFIMLHDVRQEDGIKNFFTDVYDLYIKFAMNPFYEPNSP 120

Query: 119 INSTYFDSKVNFLGRKFLT 137
           I S+ FD KV FLG+K L 
Sbjct: 121 IRSSAFDRKVQFLGKKHLL 139


>d1cxqa_ c.55.3.2 (A:) Retroviral integrase, catalytic domain {Rous
           sarcoma virus RSV [TaxId: 11886]}
          Length = 147

 Score = 25.4 bits (54), Expect = 2.5
 Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 1/55 (1%)

Query: 50  QVWQTDHMYLKTIDKFNDMMVSAFVTPTGVKFLMVHDSKNEEGIKKFFTSVYELF 104
           Q+WQTD      +   + + V    T +    +  H        +  + +   + 
Sbjct: 8   QIWQTDFTLEPRMAPRSWLAV-TVDTASSAIVVTQHGRVTSVAAQHHWATAIAVL 61


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.138    0.415 

Gapped
Lambda     K      H
   0.267   0.0602    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 535,078
Number of extensions: 23030
Number of successful extensions: 43
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 11
Length of query: 139
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 62
Effective length of database: 1,350,386
Effective search space: 83723932
Effective search space used: 83723932
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (22.5 bits)