BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3415
         (176 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
 pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
 pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
 pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
          Length = 468

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRND +VTDL+L+ +  + II   LL +IK L +
Sbjct: 104 DIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147


>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
 pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
 pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
 pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
          Length = 474

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRND +VTDL+L+ +  + II   LL +IK L +
Sbjct: 104 DIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147


>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
 pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
 pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
 pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
 pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
           With Bound Argininosuccinate
 pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
           With Bound Argininosuccinate
 pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
           With Bound Argininosuccinate
 pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
           With Bound Argininosuccinate
          Length = 474

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRND +VTDL+L+ +  + II   LL +IK L +
Sbjct: 104 DIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147


>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
 pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
 pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
 pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
          Length = 468

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRND +VTDL+L+ +  + II   LL +IK L +
Sbjct: 104 DIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147


>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
           (Eye Lens Protein)
 pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
           (Eye Lens Protein)
 pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
           (Eye Lens Protein)
 pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
           (Eye Lens Protein)
          Length = 468

 Score = 48.5 bits (114), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 23/44 (52%), Positives = 30/44 (68%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRND +VTDL+L+ +  + II   LL +IK L +
Sbjct: 104 DIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147


>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
           Mutant (Dlm)
 pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
           Mutant (Dlm)
 pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
           Mutant (Dlm)
 pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
           Mutant (Dlm)
 pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
           Mutant (Dlm) In Complex With Sulfate
          Length = 472

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRN+ +VTDL+L+ +  + II   LL +IK L +
Sbjct: 102 DIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 145


>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
           (Eye Lens Protein)
 pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
           (Eye Lens Protein)
          Length = 466

 Score = 47.0 bits (110), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KLHTGRSRN+ +VTDL+L+ +  + II   LL +IK L +
Sbjct: 102 DIAGKLHTGRSRNEQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 145


>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
 pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
          Length = 464

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 133 TGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLT 174
           T  KLHTGRSRND +VTDLRL+ R+    +  LL  +I+ + 
Sbjct: 103 TAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMV 144


>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
           Q286r Mutant
 pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
           Q286r Mutant
          Length = 464

 Score = 46.2 bits (108), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 21/42 (50%), Positives = 28/42 (66%)

Query: 133 TGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLT 174
           T  KLHTGRSRND +VTDLRL+ R+    +  LL  +I+ + 
Sbjct: 103 TAGKLHTGRSRNDQVVTDLRLWMRQTCSTLSGLLWELIRTMV 144


>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
           Argininosuccinate
 pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
           Argininosuccinate
 pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
           Argininosuccinate
 pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
           Argininosuccinate
          Length = 447

 Score = 45.8 bits (107), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/44 (50%), Positives = 30/44 (68%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KL+TGRSRND +VTDL+L+ +  + II   LL +IK L +
Sbjct: 86  DIAGKLNTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 129


>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
 pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
 pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
 pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
          Length = 465

 Score = 43.5 bits (101), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 20/44 (45%), Positives = 30/44 (68%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KL+TGRSRN+ +VTDL+L+ +  + +I   LL +IK L +
Sbjct: 101 DIAGKLNTGRSRNEQVVTDLKLFMKNSLSVISTHLLQLIKTLVE 144


>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
           (Eye Lens Protein)
 pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
           (Eye Lens Protein)
 pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
           (Eye Lens Protein)
 pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
           (Eye Lens Protein)
          Length = 466

 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/44 (47%), Positives = 28/44 (63%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
           D   KL TGRSRN+ +VTDL+L  +  I +I   LL +IK L +
Sbjct: 102 DIAGKLQTGRSRNEQVVTDLKLLLKSSISVISTHLLQLIKTLVE 145


>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
           Complexed With L-arginine
 pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
           Complexed With L-arginine
 pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
           Complexed With L-arginine
 pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
           Complexed With L-arginine
          Length = 462

 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/27 (70%), Positives = 20/27 (74%)

Query: 134 GRKLHTGRSRNDMIVTDLRLYTRKHID 160
           G KLHT RSRND + TDLRLY R  ID
Sbjct: 101 GGKLHTARSRNDQVATDLRLYLRGAID 127


>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
           Resolution Of Argininosuccinate Lyase From E. Coli
 pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
           Resolution Of Argininosuccinate Lyase From E. Coli
          Length = 457

 Score = 42.4 bits (98), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/33 (57%), Positives = 25/33 (75%), Gaps = 3/33 (9%)

Query: 134 GRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELL 166
           G+KLHTGRSRND + TDL+L+ +   D + ELL
Sbjct: 100 GKKLHTGRSRNDQVATDLKLWCK---DTVSELL 129


>pdb|2PGS|A Chain A, Crystal Structure Of A Putative Deoxyguanosinetriphosphate
           Triphosphohydrolase From Pseudomonas Syringae Pv.
           Phaseolicola 1448a
          Length = 451

 Score = 26.6 bits (57), Expect = 7.4,   Method: Compositional matrix adjust.
 Identities = 10/20 (50%), Positives = 14/20 (70%)

Query: 47  RHKNIDELLGNEVPPPAAPV 66
           +H+ I +LLGN  P P AP+
Sbjct: 393 KHRRILDLLGNSAPDPKAPL 412


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,618,988
Number of Sequences: 62578
Number of extensions: 163455
Number of successful extensions: 297
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 282
Number of HSP's gapped (non-prelim): 17
length of query: 176
length of database: 14,973,337
effective HSP length: 92
effective length of query: 84
effective length of database: 9,216,161
effective search space: 774157524
effective search space used: 774157524
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 48 (23.1 bits)