Query psy3415
Match_columns 176
No_of_seqs 206 out of 1075
Neff 4.4
Searched_HMMs 46136
Date Sat Aug 17 00:26:56 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3415.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3415hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0165 ArgH Argininosuccinate 100.0 1.6E-34 3.4E-39 264.9 7.2 120 51-175 6-142 (459)
2 KOG1316|consensus 100.0 1.8E-33 3.8E-38 252.1 6.7 125 49-175 7-145 (464)
3 PRK06389 argininosuccinate lya 100.0 5.2E-31 1.1E-35 240.5 7.1 120 51-175 4-138 (434)
4 PLN02646 argininosuccinate lya 99.9 1.7E-26 3.6E-31 212.1 7.1 121 50-175 18-155 (474)
5 TIGR00838 argH argininosuccina 99.9 5.6E-23 1.2E-27 187.0 7.2 120 51-175 2-139 (455)
6 PRK00855 argininosuccinate lya 99.9 4.3E-22 9.2E-27 181.6 7.7 120 51-175 7-143 (459)
7 PRK04833 argininosuccinate lya 99.9 5.6E-22 1.2E-26 181.1 6.8 121 50-175 3-141 (455)
8 PRK06705 argininosuccinate lya 99.8 4.1E-21 8.8E-26 177.7 8.6 121 49-175 10-148 (502)
9 PRK12308 bifunctional arginino 99.8 6.2E-21 1.4E-25 179.0 6.9 120 51-175 4-141 (614)
10 PRK02186 argininosuccinate lya 99.7 2.5E-17 5.5E-22 160.1 8.5 118 53-175 411-548 (887)
11 PRK14515 aspartate ammonia-lya 99.7 2.2E-16 4.7E-21 146.0 8.7 128 43-175 16-179 (479)
12 cd01359 Argininosuccinate_lyas 99.6 4.4E-16 9.5E-21 140.8 7.6 102 69-175 1-119 (435)
13 PRK12425 fumarate hydratase; P 99.6 5.2E-15 1.1E-19 136.2 7.1 100 71-175 37-171 (464)
14 cd01334 Lyase_I Lyase class I 99.6 8.7E-15 1.9E-19 127.6 7.5 94 77-175 1-112 (325)
15 PF00206 Lyase_1: Lyase; Inte 99.5 1.3E-15 2.7E-20 132.4 1.7 118 53-175 1-144 (312)
16 cd01595 Adenylsuccinate_lyase_ 99.5 1.3E-14 2.8E-19 129.4 6.3 103 72-175 6-121 (381)
17 cd01357 Aspartase Aspartase. T 99.5 1.4E-14 3E-19 132.6 6.6 100 71-175 35-168 (450)
18 PRK00485 fumC fumarate hydrata 99.5 3.4E-14 7.4E-19 130.4 7.4 112 59-175 26-173 (464)
19 PRK12273 aspA aspartate ammoni 99.5 8E-14 1.7E-18 128.4 8.1 98 73-175 44-175 (472)
20 TIGR02426 protocat_pcaB 3-carb 99.5 5.6E-14 1.2E-18 124.2 5.9 102 69-175 13-131 (338)
21 cd01597 pCLME prokaryotic 3-ca 99.5 9.4E-14 2E-18 125.9 7.0 97 73-175 17-131 (437)
22 cd01360 Adenylsuccinate_lyase_ 99.4 1.1E-13 2.4E-18 124.1 6.1 101 73-175 13-123 (387)
23 PLN00134 fumarate hydratase; P 99.4 5E-13 1.1E-17 122.9 8.7 100 71-175 31-165 (458)
24 cd01596 Aspartase_like asparta 99.4 2.4E-13 5.2E-18 124.7 6.6 113 58-175 21-168 (450)
25 PRK13353 aspartate ammonia-lya 99.4 5.4E-13 1.2E-17 123.0 7.7 98 73-175 42-173 (473)
26 PRK06390 adenylosuccinate lyas 99.4 4.8E-13 1E-17 122.3 6.7 102 73-175 21-134 (451)
27 TIGR00928 purB adenylosuccinat 99.4 4.4E-13 9.5E-18 121.7 5.8 115 52-175 2-129 (435)
28 PRK08540 adenylosuccinate lyas 99.4 8.3E-13 1.8E-17 120.4 6.3 102 73-175 21-135 (449)
29 TIGR00839 aspA aspartate ammon 99.3 2.1E-12 4.5E-17 119.3 8.0 100 71-175 37-171 (468)
30 cd01362 Fumarase_classII Class 99.3 3.3E-12 7.3E-17 117.3 8.4 108 63-175 26-169 (455)
31 PRK08470 adenylosuccinate lyas 99.2 2E-11 4.3E-16 111.7 7.1 101 73-175 16-126 (442)
32 TIGR00979 fumC_II fumarate hyd 99.2 3E-11 6.4E-16 111.2 8.0 100 71-175 36-170 (458)
33 PRK09285 adenylosuccinate lyas 99.1 7.7E-11 1.7E-15 108.6 7.2 119 51-175 12-156 (456)
34 PRK05975 3-carboxy-cis,cis-muc 99.0 9.7E-10 2.1E-14 98.1 6.2 98 73-175 26-140 (351)
35 PRK07492 adenylosuccinate lyas 98.9 2.1E-09 4.6E-14 98.4 6.4 59 116-175 71-129 (435)
36 PRK07380 adenylosuccinate lyas 98.8 9.6E-09 2.1E-13 94.1 6.4 59 116-175 68-126 (431)
37 cd01598 PurB PurB_like adenylo 98.7 2.8E-08 6.1E-13 91.1 6.3 59 116-175 69-134 (425)
38 cd03302 Adenylsuccinate_lyase_ 98.5 1.6E-07 3.4E-12 86.0 6.5 59 116-175 70-128 (436)
39 PLN02848 adenylosuccinate lyas 98.5 2.1E-07 4.6E-12 86.1 6.9 59 116-175 94-159 (458)
40 PRK09053 3-carboxy-cis,cis-muc 98.3 1E-06 2.2E-11 80.9 6.8 102 73-175 23-140 (452)
41 cd01594 Lyase_I_like Lyase cla 98.1 7.6E-06 1.6E-10 66.7 6.1 54 122-175 16-75 (231)
42 COG0015 PurB Adenylosuccinate 92.9 0.31 6.7E-06 45.7 6.7 59 116-175 71-130 (438)
43 COG3855 Fbp Uncharacterized pr 42.9 16 0.00034 35.7 1.9 32 6-37 361-392 (648)
44 COG4981 Enoyl reductase domain 39.6 30 0.00065 34.3 3.2 66 15-89 410-478 (717)
45 COG1027 AspA Aspartate ammonia 37.9 1.3E+02 0.0027 28.9 6.9 96 74-174 44-173 (471)
46 PF01402 RHH_1: Ribbon-helix-h 26.9 72 0.0016 19.0 2.4 17 140-156 22-38 (39)
47 cd04388 RhoGAP_p85 RhoGAP_p85: 22.3 1.6E+02 0.0035 24.7 4.4 12 146-157 68-79 (200)
48 COG0114 FumC Fumarase [Energy 21.8 3E+02 0.0066 26.4 6.5 97 73-174 40-171 (462)
No 1
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.6e-34 Score=264.86 Aligned_cols=120 Identities=24% Similarity=0.279 Sum_probs=111.0
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhc---C-CC---
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESS---A-LS--- 114 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~---g-~~--- 114 (176)
-||||++++++++..|++|++||+++|++||.+++||+++ | ++++|+++ |.++.++ | |.
T Consensus 6 wggRf~~~~~~~~~~~~~Si~~D~~l~~~di~~s~AH~~mL~~~Gii~~ee~~~I~~~-----L~~l~~e~~~g~~~~~~ 80 (459)
T COG0165 6 WGGRFSGGPDPLVKEFNASISFDKRLAEYDIAGSIAHAKMLAKQGIITEEEAAKILEG-----LEELLEEIRAGKFELDP 80 (459)
T ss_pred CCCCccCCCcHHHHHHhccchhHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHHHHHhcCCccCCC
Confidence 4899999999999999999999999999999999999993 4 78999999 6666554 4 43
Q ss_pred -CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 115 -EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 115 -~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
+||||++||++|++++|+.||||||||||||||||++|||+|+++.++.+.+..|+++|++
T Consensus 81 ~~EDvH~aiE~~L~~~iG~~ggkLhtgRSRNDQVatd~rL~lr~~~~~l~~~i~~l~~aL~~ 142 (459)
T COG0165 81 DDEDVHTAIEARLIERIGDVGGKLHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLD 142 (459)
T ss_pred ccccHHHHHHHHHHHHHhhhhchhccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999999999999999999999999999999999999975
No 2
>KOG1316|consensus
Probab=99.98 E-value=1.8e-33 Score=252.06 Aligned_cols=125 Identities=26% Similarity=0.259 Sum_probs=112.6
Q ss_pred hccccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-CC----
Q psy3415 49 KNIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-LS---- 114 (176)
Q Consensus 49 ~~i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-~~---- 114 (176)
+--||||+|+++|.|.+||.||+||+++|..|+.+++||+. +| +.++|+++|.+ ++.-|+.| |.
T Consensus 7 KlWGGRFtg~~dp~m~~fn~Si~ydk~ly~~Dv~gSkaya~~L~~~glit~~e~dkil~gLe~--i~~ew~~~kf~~~p~ 84 (464)
T KOG1316|consen 7 KLWGGRFTGAVDPLMEKFNASIPYDKRLYEADVDGSKAYAKALEKAGLITEAELDKILKGLEK--IRREWAAGKFKLNPN 84 (464)
T ss_pred hhhccccCCCCCHHHHHhhccCccchHHHHhhhhhhHHHHHHHHHcCCCcHHHHHHHHHHHHH--HHHHHhcCceEeCCC
Confidence 44699999999999999999999999999999999999999 44 67889999544 44445556 43
Q ss_pred CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 115 EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 115 ~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
.||||+++|++|.|.+|+.||||||||||||||+||+|||+|+.+.++...+..|++++++
T Consensus 85 dEDvHtanErrL~eliG~~agKlHTgRSRNDQV~TDlRLw~r~~i~~~~~~l~~L~~~~v~ 145 (464)
T KOG1316|consen 85 DEDVHTANERRLTELIGEIAGKLHTGRSRNDQVVTDLRLWLRDAIDTILGLLWNLIRVLVD 145 (464)
T ss_pred chhhhhHHHHHHHHHHhhhhhhcccCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999999999999999999999999999999999999999999999875
No 3
>PRK06389 argininosuccinate lyase; Provisional
Probab=99.97 E-value=5.2e-31 Score=240.55 Aligned_cols=120 Identities=16% Similarity=0.076 Sum_probs=110.2
Q ss_pred cccccCCCCC-CCcccc-CCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcCCC----C
Q psy3415 51 IDELLGNEVP-PPAAPV-TPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSALS----E 115 (176)
Q Consensus 51 i~~Rl~g~~~-~~v~~f-~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g~~----~ 115 (176)
-+|||+++++ +.+..| ++|+.||++++++|+.+++||+++ | ++++|+++ |.++.+.+|. .
T Consensus 4 w~gr~~~~~~~~~~~~~~~~s~~~D~~l~~~di~~~~AH~~mL~~~gii~~~e~~~i~~~-----L~~i~~~~~~~~~~~ 78 (434)
T PRK06389 4 WSGGAGEELENDFYDNIVKDDIDADKNLIKYEIINLLAYHVALAQRRLITEKAPKCVINA-----LIDIYKNGIEIDLDL 78 (434)
T ss_pred cccccCCCCchHHHHHHHCCCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHcCCCcCCCCC
Confidence 4789999998 668899 999999999999999999999994 3 68889999 7788775543 4
Q ss_pred chhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 116 EMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 116 EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
||+|++||++|++++|++||||||||||||||+|++|||+|+++.++.+.+.+++++|++
T Consensus 79 EDvh~~iE~~L~~~~G~~gg~lhtgRSRNDqvat~~RL~~r~~~~~~~~~l~~l~~~l~~ 138 (434)
T PRK06389 79 EDVHTAIENFVIRRCGDMFKNFRLFLSRNEQVHADLNLFIIDKIIEIEKILYEIIKVIPG 138 (434)
T ss_pred CchHHHHHHHHHHHhchhhhhhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999874
No 4
>PLN02646 argininosuccinate lyase
Probab=99.93 E-value=1.7e-26 Score=212.11 Aligned_cols=121 Identities=21% Similarity=0.207 Sum_probs=110.0
Q ss_pred ccccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhc---C-CC--
Q psy3415 50 NIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESS---A-LS-- 114 (176)
Q Consensus 50 ~i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~---g-~~-- 114 (176)
-.+|||++++++.+..|++|+.||+++|++||.+++||+++ | ++++|+++ |.++.+. | |+
T Consensus 18 ~w~~r~~~~~~~~~~~~~~s~~~d~~l~~~di~~~~Aha~~L~~~Gii~~~~a~~I~~a-----l~~i~~~~~~~~f~~~ 92 (474)
T PLN02646 18 LWGGRFEEGVTPAVEKFNESISFDKRLYKEDIMGSKAHASMLAKQGIITDEDRDSILDG-----LDEIEKEIEAGKFEWR 92 (474)
T ss_pred hhcCCCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHcCcccCCCcCC
Confidence 35789999999999999999999999999999999999993 4 67889998 7777543 2 43
Q ss_pred --CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 115 --EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 115 --~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
.||+|+++|++|++++|+.||++|+||||||||+|++|||+|+.+..+...|..|+++|++
T Consensus 93 ~~~ed~h~~iE~~L~e~~G~~g~~lH~grSrND~v~Ta~~L~lr~~l~~l~~~L~~L~~~L~~ 155 (474)
T PLN02646 93 PDREDVHMNNEARLTELIGEPAKKLHTARSRNDQVATDTRLWCRDAIDVIRKRIKTLQVALVE 155 (474)
T ss_pred CCCCchHHHHHHHHHHHhchhhCcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999999999999999999999999999999999999999999999999999999874
No 5
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=99.88 E-value=5.6e-23 Score=187.01 Aligned_cols=120 Identities=27% Similarity=0.313 Sum_probs=108.6
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcC----CC---
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSA----LS--- 114 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g----~~--- 114 (176)
.+|||++++++.+..|++|+.+|++++.+++.+++||++. | ++++|+++ |.++.+.+ |+
T Consensus 2 ~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Ah~~~L~~~G~l~~~~a~~I~~a-----l~~i~~~~~~~~~~~~~ 76 (455)
T TIGR00838 2 WGGRFTGGMDPRVAKFNASLSFDKELAEYDIEGSIAHTKMLKKAGILTEEEAAKIIEG-----LNELKEEGREGPFILDP 76 (455)
T ss_pred CCccCCCCccHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHcCcccCCcCCCC
Confidence 4789999999999999999999999999999999999993 3 67788888 77776533 43
Q ss_pred -CchhHHHHHHHHHHHhc-ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 115 -EEMDSSSLSSGGQLRCC-DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 115 -~EDIH~aiE~~Lie~iG-~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
.||+|++||++|++++| +.||++|+||||||++.|++||++|+.+..+...|..|+++|++
T Consensus 77 ~~~d~~~~ie~~l~e~~g~~~g~~iH~g~SrnD~~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~ 139 (455)
T TIGR00838 77 DDEDIHMAIERELIDRVGEDLGGKLHTGRSRNDQVATDLRLYLRDHVLELAEALLDLQDALIE 139 (455)
T ss_pred CcCcHHHHHHHHHHHHhCCCccCCccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 39999999999999999 78999999999999999999999999999999999999999874
No 6
>PRK00855 argininosuccinate lyase; Provisional
Probab=99.86 E-value=4.3e-22 Score=181.60 Aligned_cols=120 Identities=28% Similarity=0.294 Sum_probs=109.1
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcC----CC---
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSA----LS--- 114 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g----~~--- 114 (176)
.|+||++++.+.+..|+.|+.+|++++.+++.+++||++. | ++++|+++ |.++.+.+ |+
T Consensus 7 ~g~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~Aha~~l~~~G~l~~~~a~~i~~a-----l~~i~~~~~~~~~~~~~ 81 (459)
T PRK00855 7 WGGRFSEGPDELVERFTASISFDKRLAEEDIAGSIAHARMLAKQGILSEEEAEKILAG-----LDEILEEIEAGKFEFSP 81 (459)
T ss_pred cccCCCcchHHHHHHcccCccchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhhcccCCcccCC
Confidence 4789999999999999999999999999999999999993 4 67888888 77775442 43
Q ss_pred -CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 115 -EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 115 -~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
.||+|++||++|++++|+.||++|+||||||++.|++||++|+.+..+...|..++++|.+
T Consensus 82 ~~~d~~~~ie~~l~~~~g~~g~~iH~g~SrnD~~~Ta~~L~~r~~l~~l~~~L~~l~~~L~~ 143 (459)
T PRK00855 82 ELEDIHMAIEARLTERIGDVGGKLHTGRSRNDQVATDLRLYLRDEIDEIAELLLELQKALLD 143 (459)
T ss_pred CCCcHHHHHHHHHHHHhccccCcccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999988999999999999999999999999999999999999999874
No 7
>PRK04833 argininosuccinate lyase; Provisional
Probab=99.85 E-value=5.6e-22 Score=181.09 Aligned_cols=121 Identities=20% Similarity=0.184 Sum_probs=107.7
Q ss_pred ccccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-------C
Q psy3415 50 NIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-------L 113 (176)
Q Consensus 50 ~i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-------~ 113 (176)
-+++||++++++.+..|++|+.+|++++++++.+++||++ +| ++++|+++ |.++.+.+ +
T Consensus 3 ~~~~r~~~~~~~~~~~~~~~~~~d~~l~~~~i~~~~Aha~~l~e~Gii~~~~a~~I~~a-----l~~i~~~~~~~~~~~~ 77 (455)
T PRK04833 3 LWGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTADEQQQLEEA-----LNELLEEVRANPQQIL 77 (455)
T ss_pred CcccccCCcchHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhhhhcCCcccC
Confidence 3678999988888999999999999999999999999999 34 67888888 66654332 2
Q ss_pred C--CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 114 S--EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 114 ~--~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
+ .||+|++||++|++++|+.|||+|+||||||+++|++||++|+.+..+...|..++++|++
T Consensus 78 ~~~~edv~~~ie~~L~~~~g~~g~~lH~grSrnD~~~Ta~rl~~r~~l~~l~~~l~~l~~~L~~ 141 (455)
T PRK04833 78 ASDAEDIHSWVEGKLIDKVGDLGKKLHTGRSRNDQVATDLKLWCKDQVAELLTALRQLQSALVE 141 (455)
T ss_pred CCCCchHHHHHHHHHHHHhccccCcccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 3899999999999999999999999999999999999999999999999999999999875
No 8
>PRK06705 argininosuccinate lyase; Provisional
Probab=99.84 E-value=4.1e-21 Score=177.68 Aligned_cols=121 Identities=17% Similarity=0.084 Sum_probs=104.7
Q ss_pred hccccccCCCCCCCccccCCCcccchhhhhhhhh-hhhhhHh------hh---cccccccccchhhhhhhhhcC---CC-
Q psy3415 49 KNIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNK-VNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA---LS- 114 (176)
Q Consensus 49 ~~i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~-v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g---~~- 114 (176)
...|+||++++.+.+. |++|.+||.+.+..++. +++||++ || ++++|.++ |.++.+.+ +.
T Consensus 10 ~~~~~r~~~~~~~~~~-~~~~~~~~~~~~~~~~l~ve~Aha~~l~~~GiIp~e~a~~I~~a-----l~~~~~~~~~~l~~ 83 (502)
T PRK06705 10 KSEGADFPGKTYVDCV-LQHVFNFQRNYLLKDMFQVHKAHIVMLTEENLMKKEEAKFILHA-----LKKVEEIPEEQLLY 83 (502)
T ss_pred HHhcccCCCCcchhHH-hhcccchhHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHhhhcccCcccc
Confidence 5678999999999999 99999999888776665 9999999 44 67888888 54442222 32
Q ss_pred ---CchhHHHHHHHHHHHhc-ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 115 ---EEMDSSSLSSGGQLRCC-DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 115 ---~EDIH~aiE~~Lie~iG-~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
.||+|++||.++++.+| ++|||+|+|||||||++|++|||+|+.+..+...+..++++|++
T Consensus 84 ~~~~edv~~~ie~~l~~~~G~~~g~~lH~GrSrnD~v~Ta~~L~lr~~l~~l~~~l~~l~~~l~~ 148 (502)
T PRK06705 84 TEQHEDLFFLVEHLISQEAKSDFVSNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLLQESILQ 148 (502)
T ss_pred CCCCCchHHHHHHHHHHhcCchhhccccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 49999999999999998 69999999999999999999999999999999999999999875
No 9
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=99.83 E-value=6.2e-21 Score=179.00 Aligned_cols=120 Identities=20% Similarity=0.172 Sum_probs=106.8
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhh---cC----CC
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLES---SA----LS 114 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~---~g----~~ 114 (176)
-++||++++++.+..|++|..+|++++.+|+.+++||+. || ++++|.++ |..+.. .+ ++
T Consensus 4 ~~~r~~~~~~~~~~~~~~~~~~~~~l~~e~i~~~~A~a~~l~~~Giip~~~a~~I~~~-----l~~~~~~~~~~~~~~~~ 78 (614)
T PRK12308 4 WGGRFSQAADTRFKQFNDSLRFDYRLAEQDIVGSIAWSKALLSVGVLSEEEQQKLELA-----LNELKLEVMEDPEQILL 78 (614)
T ss_pred cccCCCCcccHHHHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHHHHhcCCCCCCC
Confidence 478999999999999999999999999999999999999 44 57778887 555421 22 22
Q ss_pred --CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 115 --EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 115 --~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
.||+|.++|++|++++|+.|||+|+||||||+++|++||++|+.+..+...|..++++|++
T Consensus 79 ~~~ed~h~~ie~~L~~~~g~~~~~iH~g~S~nD~~~Ta~~L~~r~~~~~l~~~l~~l~~~l~~ 141 (614)
T PRK12308 79 SDAEDIHSWVEQQLIGKVGDLGKKLHTGRSRNDQVATDLKLWCRQQGQQLLLALDQLQQQMVN 141 (614)
T ss_pred CccccHHHHHHHHHHHHhcccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999874
No 10
>PRK02186 argininosuccinate lyase; Provisional
Probab=99.70 E-value=2.5e-17 Score=160.06 Aligned_cols=118 Identities=19% Similarity=0.152 Sum_probs=93.5
Q ss_pred cccCCCCCCCccccCC---CcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC---CC---
Q psy3415 53 ELLGNEVPPPAAPVTP---QSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA---LS--- 114 (176)
Q Consensus 53 ~Rl~g~~~~~v~~f~s---Si~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g---~~--- 114 (176)
||..-+..|.+.+..+ -...|...+.+++.+++||++ || ++++|+++ |.++.+.+ +.
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ah~~~l~~~gii~~~~a~~I~~~-----l~~~~~~~~~~~~~~~ 485 (887)
T PRK02186 411 GAARPGLPPEAQAIVYGPGASEAPLAELDHLAAIDEAHLVMLGDTGIVAPERARPLLDA-----HRRLRDAGFAPLLARP 485 (887)
T ss_pred CccccCCChhhhceecCCCcchhhhhhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHHhHHhhCcCCC
Confidence 3444444445544333 233467779999999999999 34 67888888 54443222 32
Q ss_pred -CchhHHHHHHHHHHHhc-ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 115 -EEMDSSSLSSGGQLRCC-DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 115 -~EDIH~aiE~~Lie~iG-~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
.||+|+++|++|++++| ++|||+|+|||||||++|++||++|+.+..+...|..|+++|++
T Consensus 486 ~~~~~~~~~e~~L~~~~g~~~~~~lH~grSrnD~v~T~~~l~lr~~~~~l~~~l~~l~~~L~~ 548 (887)
T PRK02186 486 APRGLYMLYEAYLIERLGEDVGGVLQTARSRNDINATTTKLHLREATSRAFDALWRLRRALVF 548 (887)
T ss_pred CCcchHHHHHHHHHHHhChhhhcccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999 79999999999999999999999999999999999999999975
No 11
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=99.66 E-value=2.2e-16 Score=145.99 Aligned_cols=128 Identities=10% Similarity=0.006 Sum_probs=102.8
Q ss_pred hhhhhhhccccccCCCC-CCCcccc-CCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhc
Q psy3415 43 NFIGRHKNIDELLGNEV-PPPAAPV-TPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESS 111 (176)
Q Consensus 43 ~~~~~~~~i~~Rl~g~~-~~~v~~f-~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~ 111 (176)
..+|.+.-=.+++=|.. ...+..| .+++.+|++++++++.+++||+++ | +++.|+++ +.++.+.
T Consensus 16 d~~g~~~~p~~~~~g~~t~ra~~~f~~~~~~~~~~~i~~~~~v~~A~a~~l~~~G~l~~~~~~~I~~a-----l~ei~~~ 90 (479)
T PRK14515 16 DFLGEKEVPNYAYYGVQTMRAVENFPITGYKIHEGLIKAFAIVKKAAALANTDVGRLELNKGGAIAEA-----AQEILDG 90 (479)
T ss_pred ccCCCCCCcccccchHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHcC
Confidence 44555554445554544 3445688 788999999999999999999993 4 67888898 7777654
Q ss_pred C----CC--C----ch------hHHHHHHHHHHHhcc-cccccc--------cccchhHHHHHHHHHHHHHHHHHHHHHH
Q psy3415 112 A----LS--E----EM------DSSSLSSGGQLRCCD-TGRKLH--------TGRSRNDMIVTDLRLYTRKHIDIIIELL 166 (176)
Q Consensus 112 g----~~--~----ED------IH~aiE~~Lie~iG~-~gGkLH--------TGRSRNDqvAT~~RL~lRd~l~~l~~~L 166 (176)
+ |+ + ++ +|+.||+++++++|+ .||++| +||||||++.|++||++|+.+..+...|
T Consensus 91 ~~~~~f~~~~~~~g~~t~~nmnvnevie~~~~~~~G~~~g~~~~~hpnd~vn~grS~ND~v~Ta~~L~~~~~l~~l~~~L 170 (479)
T PRK14515 91 KWHDHFIVDPIQGGAGTSMNMNANEVIANRALELLGMEKGDYHYISPNSHVNMAQSTNDAFPTAIHIATLNALEGLLQTM 170 (479)
T ss_pred cccCCCCCCcccCCCcccccchHHHHHHHHHHHHhCcccCCccccCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 3 54 2 56 777899999999996 588555 9999999999999999999999999999
Q ss_pred HHHHHHHhc
Q psy3415 167 LTMIKHLTK 175 (176)
Q Consensus 167 ~~L~~aLl~ 175 (176)
..|+++|.+
T Consensus 171 ~~L~~~L~~ 179 (479)
T PRK14515 171 GYMHDVFEL 179 (479)
T ss_pred HHHHHHHHH
Confidence 999999864
No 12
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=99.63 E-value=4.4e-16 Score=140.81 Aligned_cols=102 Identities=30% Similarity=0.354 Sum_probs=89.8
Q ss_pred CcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhc----CCC----CchhHHHHHHHHHHHhc
Q psy3415 69 QSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESS----ALS----EEMDSSSLSSGGQLRCC 131 (176)
Q Consensus 69 Si~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~----g~~----~EDIH~aiE~~Lie~iG 131 (176)
|+.+|+.++.+++.+++||++ +| .++.|+++ +.++.+. .|. .+|+|+++|.+|++++|
T Consensus 1 ~~~~d~~~~~~~~~ve~A~a~al~~~Gii~~~~a~~I~~a-----l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g 75 (435)
T cd01359 1 SISFDRRLFEEDIAGSIAHAVMLAEQGILTEEEAAKILAG-----LAKIRAEIEAGAFELDPEDEDIHMAIERRLIERIG 75 (435)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhhcccCCccCCCCCCcHHHHHHHHHHHHHH
Confidence 578899999999999999999 44 67788888 6555332 233 49999999999999999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 132 ~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
+.||++|+||||||++.|++||++|+.+..+...+..++++|.+
T Consensus 76 ~~~~~iH~G~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~ 119 (435)
T cd01359 76 DVGGKLHTGRSRNDQVATDLRLYLRDALLELLELLLDLQRALLD 119 (435)
T ss_pred HHHhhhhccCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999874
No 13
>PRK12425 fumarate hydratase; Provisional
Probab=99.56 E-value=5.2e-15 Score=136.18 Aligned_cols=100 Identities=8% Similarity=0.087 Sum_probs=85.4
Q ss_pred ccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcC----CC--------CchhHHHH----HHH
Q psy3415 71 SDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSA----LS--------EEMDSSSL----SSG 125 (176)
Q Consensus 71 ~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g----~~--------~EDIH~ai----E~~ 125 (176)
.....+..+...+++||+++ | +++.|+++ +.++.+.+ |+ .||+|+++ |++
T Consensus 37 ~~~~~~i~a~~~ik~Aha~~l~~~G~l~~~~~~~I~~a-----l~ei~~~~~~~~f~~~~~~~g~~ed~~mnvnevi~~~ 111 (464)
T PRK12425 37 RMPLAVLHALALIKKAAARVNDRNGDLPADIARLIEQA-----ADEVLDGQHDDQFPLVVWQTGSGTQSNMNVNEVIAGR 111 (464)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHcCcccCCCCccCCCCCCcchHHHHHHHHHHHH
Confidence 34588899999999999993 4 67788888 77776543 44 38999999 778
Q ss_pred HHHHhcc-cccc--------cccccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q psy3415 126 GQLRCCD-TGRK--------LHTGRSRNDMIVTDLRLYTRKHI-DIIIELLLTMIKHLTK 175 (176)
Q Consensus 126 Lie~iG~-~gGk--------LHTGRSRNDqvAT~~RL~lRd~l-~~l~~~L~~L~~aLl~ 175 (176)
+.+++|+ .||+ +|+||||||++.|++||++|+.+ ..+...|..|+++|.+
T Consensus 112 ~~e~~G~~~g~~~~vhpn~~vh~g~S~ND~~~Ta~~L~~r~~l~~~l~~~L~~l~~~L~~ 171 (464)
T PRK12425 112 ANELAGNGRGGKSPVHPNDHVNRSQSSNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAE 171 (464)
T ss_pred HHHHhCcccccccccCchhcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888885 8889 99999999999999999999999 5999999999999864
No 14
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=99.55 E-value=8.7e-15 Score=127.59 Aligned_cols=94 Identities=24% Similarity=0.310 Sum_probs=80.1
Q ss_pred hhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC------CC--CchhHHHHHHHHHHHhccc-ccccc
Q psy3415 77 CYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA------LS--EEMDSSSLSSGGQLRCCDT-GRKLH 138 (176)
Q Consensus 77 ~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g------~~--~EDIH~aiE~~Lie~iG~~-gGkLH 138 (176)
+.+++.+++||++ +| +++.|.++ +..+.... .. .+|.|+++|+.|++++|+. ||++|
T Consensus 1 ~~~~l~ve~A~a~al~~~Gli~~~~a~~I~~~-----l~~~~~~~~~~~~~~~~~~~~~~~~~e~~l~~~~g~~~~~~lH 75 (325)
T cd01334 1 IRADLQVEKAHAKALAELGLLPKEAAEAILAA-----LDEILEGIAADQVEQEGSGTHDVMAVEEVLAERAGELNGGYVH 75 (325)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhCccccCeeeCCCCccHHHHHHHHHHHHhccccCCCCc
Confidence 3567889999999 44 67778887 55554322 12 4999999999999999986 99999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 139 TGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 139 TGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
+||||||++.|++||++|+.+..+...+.+++++|++
T Consensus 76 ~G~S~nDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~ 112 (325)
T cd01334 76 TGRSSNDIVDTALRLALRDALDILLPALKALIDALAA 112 (325)
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999874
No 15
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=99.54 E-value=1.3e-15 Score=132.36 Aligned_cols=118 Identities=19% Similarity=0.141 Sum_probs=101.3
Q ss_pred cccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-----C--C--
Q psy3415 53 ELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-----L--S-- 114 (176)
Q Consensus 53 ~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-----~--~-- 114 (176)
|||+.++++....|+.+..+|.++..+++.+..||+. +| .+++|.++ +.++..++ | .
T Consensus 1 Gr~~~~~~~~~~~~s~~~~~~~~l~~~~~~~e~a~~~a~a~~g~i~~~~a~~I~~a-----~~~i~~~~~~~~~~~~~~~ 75 (312)
T PF00206_consen 1 GRYEVPTDEMYAIFSDRARFDFWLAEYDIRVEAALAKALAEAGIIPKEAADAIVKA-----LEEILEDGDLDDAFELDEI 75 (312)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHTTSSTHHHHHHHHHH-----HHHHHHHTCTHGHHHHCSC
T ss_pred CCcCCchHHHHHHHCHHHHhCCEeeccHHHHHHHHHHHHHHhhcchHHHHHHHHHH-----HHHHHHhhccccccchhhh
Confidence 7888889988999999999999999999999999999 33 57888888 66665532 1 2
Q ss_pred CchhHHHHHHHHHHHhc-------ccccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3415 115 EEMDSSSLSSGGQLRCC-------DTGRKLHTGRSRNDMIVTDLRLYTRKHIDI-IIELLLTMIKHLTK 175 (176)
Q Consensus 115 ~EDIH~aiE~~Lie~iG-------~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~-l~~~L~~L~~aLl~ 175 (176)
.+++|..++..|.+.+| +.++++|+||||||++.|+++|++|+.+.+ +...+..++++|.+
T Consensus 76 ~~~~~~~~~~~l~~~~~e~~~~~~~~~~~vH~G~Ts~Di~~Ta~~l~lr~~~~~~l~~~l~~l~~~L~~ 144 (312)
T PF00206_consen 76 EEDIGHAVEANLNEVLGELLGEPPEAGGWVHYGRTSNDIVDTALRLQLRDALLELLLERLKALIDALAE 144 (312)
T ss_dssp SSSHHHHHHHHHHHHHHHHHTHSSGGGGGTTTT--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccchhHHHHHHHHHhhhhhhccccccccccCCCcHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 48999999999999998 789999999999999999999999999955 99999999999864
No 16
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=99.52 E-value=1.3e-14 Score=129.42 Aligned_cols=103 Identities=17% Similarity=0.191 Sum_probs=81.9
Q ss_pred cchhhhhhhhhhhhhhHh------hh---cccccccccchh--hhhhhhhcC-CCCchhHHHHHHHHHHHhcc-cccccc
Q psy3415 72 DDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHN--NIHKLESSA-LSEEMDSSSLSSGGQLRCCD-TGRKLH 138 (176)
Q Consensus 72 ~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~--~L~~l~~~g-~~~EDIH~aiE~~Lie~iG~-~gGkLH 138 (176)
.|..++.+++.+++||++ +| ++++|.+++... ...++.+.. ...+|+ .++|++|++++|+ +||++|
T Consensus 6 s~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~l~~~~~d~~~~~~~~~~~~~~v-~~~e~~L~~~~g~~~~~~vH 84 (381)
T cd01595 6 SEENKLRTWLDVEAALAEAQAELGLIPKEAAEEIRAAADVFEIDAERIAEIEKETGHDV-IAFVYALAEKCGEDAGEYVH 84 (381)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhhhcccCCHHHHHHHHHHhCcCc-HHHHHHHHHHhhhHhhhHee
Confidence 478899999999999999 34 566777763220 011110000 114788 9999999999997 899999
Q ss_pred cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 139 TGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 139 TGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
+||||||++.|++||++|+.+..+...+..++++|.+
T Consensus 85 ~g~S~nDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~ 121 (381)
T cd01595 85 FGATSQDINDTALALQLRDALDIILPDLDALIDALAK 121 (381)
T ss_pred cCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999864
No 17
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=99.52 E-value=1.4e-14 Score=132.62 Aligned_cols=100 Identities=11% Similarity=0.060 Sum_probs=82.3
Q ss_pred ccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhh----cCCC--------CchhHHHHH----HH
Q psy3415 71 SDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLES----SALS--------EEMDSSSLS----SG 125 (176)
Q Consensus 71 ~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~----~g~~--------~EDIH~aiE----~~ 125 (176)
.+|..++.+++.+++||+. +| ++++|.++ +.++.+ ..|+ .+|+|+++| ..
T Consensus 35 ~~d~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~a-----l~~i~~~~~~d~~~~~~~~~~~~~~~~~~~~~vi~~~ 109 (450)
T cd01357 35 KIHPELIRALAMVKKAAALANAELGLLDEEKAEAIVKA-----CDEIIAGKLHDQFVVDVIQGGAGTSTNMNANEVIANR 109 (450)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhccccCCCccchhhccccchhhhhHhHHHHHH
Confidence 4599999999999999999 34 67788888 655532 2233 168777766 66
Q ss_pred HHHHhc-ccccc--------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 126 GQLRCC-DTGRK--------LHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 126 Lie~iG-~~gGk--------LHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
+++++| +.||| +|+||||||++.|++||++|+.+..+...|..++++|++
T Consensus 110 ~~e~~g~~~g~~~~~h~~~~vH~GrSrnD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~ 168 (450)
T cd01357 110 ALELLGHEKGEYQYVHPNDHVNMSQSTNDVYPTALRLALILLLRKLLDALAALQEAFQA 168 (450)
T ss_pred HHHHhCccccCCcccCCcccccCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 677899 56876 899999999999999999999999999999999999875
No 18
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=99.50 E-value=3.4e-14 Score=130.40 Aligned_cols=112 Identities=8% Similarity=0.051 Sum_probs=89.2
Q ss_pred CCCCccccCCC-cccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhc---C-CC--------Cc
Q psy3415 59 VPPPAAPVTPQ-SSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESS---A-LS--------EE 116 (176)
Q Consensus 59 ~~~~v~~f~sS-i~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~---g-~~--------~E 116 (176)
+++.+..|+.| +.+|+.++.+++.+++||+. +| .+++|.++ +.++.+. + |+ .+
T Consensus 26 ~~~~~~~f~~s~~~~~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~a-----l~~i~~~~~~~~~~~~~~~~~~~~ 100 (464)
T PRK00485 26 TQRSLENFPIGGERMPRELIRALALLKKAAARVNAELGLLDAEKADAIVAA-----ADEVIAGKHDDHFPLDVWQTGSGT 100 (464)
T ss_pred hHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhCccccCCCcchhhccccc
Confidence 45557799766 99999999999999999999 44 67778887 6665332 2 32 37
Q ss_pred hhHHHH----HHHHHHHhccc---ccccc------cccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q psy3415 117 MDSSSL----SSGGQLRCCDT---GRKLH------TGRSRNDMIVTDLRLYTRKHI-DIIIELLLTMIKHLTK 175 (176)
Q Consensus 117 DIH~ai----E~~Lie~iG~~---gGkLH------TGRSRNDqvAT~~RL~lRd~l-~~l~~~L~~L~~aLl~ 175 (176)
|+|+++ +.++.+..|.. ++++| +|||||||+.|++||++|+.+ ..+...|..|+++|++
T Consensus 101 ~~~~~i~~~i~~~~~~~~g~~~~~~~~~h~~~~vh~G~SrnD~v~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~ 173 (464)
T PRK00485 101 QSNMNVNEVIANRASELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAIVERLLPALEHLRDTLAA 173 (464)
T ss_pred cccccHHHHHHHHHHHhcCccccccCccCccccCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888 56555666743 44555 999999999999999999999 7999999999999874
No 19
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=99.48 E-value=8e-14 Score=128.44 Aligned_cols=98 Identities=10% Similarity=0.047 Sum_probs=81.6
Q ss_pred chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhc----CCC--------CchhHHHHHHH----HH
Q psy3415 73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESS----ALS--------EEMDSSSLSSG----GQ 127 (176)
Q Consensus 73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~----g~~--------~EDIH~aiE~~----Li 127 (176)
=+.++.+++.+++||++ +| ++++|.++ +.++.+. .|+ .||.|+++|.. ++
T Consensus 44 ~~~~~~~~l~ve~A~a~al~~~Gii~~~~a~~I~~a-----l~~i~~~~~~~~~~~~~~~~~~~e~~~~~v~~~i~~~~~ 118 (472)
T PRK12273 44 YPELIRALAMVKKAAALANKELGLLDEEKADAIVAA-----CDEILAGKLHDQFVVDVIQGGAGTSTNMNANEVIANRAL 118 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhccccCCcccchhhccccchhhhHHHHHHHHHHH
Confidence 37789999999999999 44 67788888 6665322 254 37999998888 56
Q ss_pred HHhcc-cccc--cc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 128 LRCCD-TGRK--LH------TGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 128 e~iG~-~gGk--LH------TGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
+++|+ .|++ +| +|||||||++|++||++|+.+..+...|..|+++|++
T Consensus 119 e~~g~~~~~~~~vHp~d~v~~GrSrnD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~ 175 (472)
T PRK12273 119 ELLGHEKGEYQYVHPNDHVNMSQSTNDAYPTAIRIALLLSLRKLLDALEQLQEAFEA 175 (472)
T ss_pred HHhCcccCCcceeCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78995 5556 99 9999999999999999999999999999999999875
No 20
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=99.47 E-value=5.6e-14 Score=124.18 Aligned_cols=102 Identities=16% Similarity=0.133 Sum_probs=83.1
Q ss_pred CcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhh----hcC--CC-CchhHHHHHHHHHHHhc-
Q psy3415 69 QSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLE----SSA--LS-EEMDSSSLSSGGQLRCC- 131 (176)
Q Consensus 69 Si~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~----~~g--~~-~EDIH~aiE~~Lie~iG- 131 (176)
++-.|..++.+.+.+.+||++ +| .++.|.++ +.++. ..+ .. .++.+.++|+.|++++|
T Consensus 13 ~i~sd~~~i~~~~~ve~A~a~al~~~Gii~~~~a~~I~~a-----~~~~~~d~~~~~~~~~~~~~~~~~~~~~l~~~~g~ 87 (338)
T TIGR02426 13 ELFSDRAFLRAMLDFEAALARAQADAGLIPAEAAAAIEAA-----CAAAAPDLEALAHAAATAGNPVIPLVKALRKAVAG 87 (338)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh-----hccCCCCHHHHHhHHHhcCCcHHHHHHHHHHHhCc
Confidence 345689999999999999999 34 56677776 33321 111 11 35667899999999999
Q ss_pred ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 132 ~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
+.||++|+||||||++.|++||++|+.+..+...+..++++|.+
T Consensus 88 ~~g~~vH~G~S~nD~~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~ 131 (338)
T TIGR02426 88 EAARYVHRGATSQDVIDTSLMLQLRDALDLLLADLGRLADALAD 131 (338)
T ss_pred cccCcccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999874
No 21
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=99.46 E-value=9.4e-14 Score=125.91 Aligned_cols=97 Identities=21% Similarity=0.233 Sum_probs=78.9
Q ss_pred chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC---CC---C--chhHHHHHHHHHHHhcc-cc
Q psy3415 73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA---LS---E--EMDSSSLSSGGQLRCCD-TG 134 (176)
Q Consensus 73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g---~~---~--EDIH~aiE~~Lie~iG~-~g 134 (176)
|...+.....+.+||++ +| .++.|.++ +.++ +.+ +. . ++.+.++|.+|++++|+ .|
T Consensus 17 ~~~~i~~~~~ve~A~a~~l~~~Gii~~~~a~~I~~a-----l~~~-~~~~~~~~~~~~~~~~~v~a~e~~l~e~~g~~~g 90 (437)
T cd01597 17 DENRVQAMLDVEAALARAQAELGVIPKEAAAEIAAA-----ADVE-RLDLEALAEATARTGHPAIPLVKQLTAACGDAAG 90 (437)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHh-----cccc-CCCHHHHHHHHHHhCCCcHHHHHHHHHHcCcccc
Confidence 77789999999999999 34 56667676 3222 111 11 2 34446999999999995 69
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 135 RKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 135 GkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
|++|+||||||+++|++||++|+.+..+...+..|+++|++
T Consensus 91 ~~lH~grSrnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~ 131 (437)
T cd01597 91 EYVHWGATTQDIIDTALVLQLRDALDLLERDLDALLDALAR 131 (437)
T ss_pred CeeecCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999875
No 22
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=99.44 E-value=1.1e-13 Score=124.15 Aligned_cols=101 Identities=18% Similarity=0.260 Sum_probs=80.0
Q ss_pred chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-CCCchhHHHHHHHHHHHhcccccccccccc
Q psy3415 73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-LSEEMDSSSLSSGGQLRCCDTGRKLHTGRS 142 (176)
Q Consensus 73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-~~~EDIH~aiE~~Lie~iG~~gGkLHTGRS 142 (176)
|.....+.+.++.||++ +| ++++|.+++.. ...++.+.. -..+|+ .++|..|++++|+.||++|+|||
T Consensus 13 ~~~~~~~~l~ve~A~a~~l~~~Glip~~~a~~I~~~l~~-~~~~~~~~~~~~~~dv-~~~e~~L~~~~g~~~~~lH~G~S 90 (387)
T cd01360 13 EENKFRKWLEVEAAVCEAWAKLGVIPAEAAEEIRKKAKF-DVERVKEIEAETKHDV-IAFVTAIAEYCGEAGRYIHFGLT 90 (387)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHhhc-CHHHHHHHHHHhCCCh-HHHHHHHHHHHHHhhhheeCCCC
Confidence 66778889999999999 34 56667666321 011111100 113677 79999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 143 RNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 143 RNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
|||++.|++||++|+.+..+...+..++++|++
T Consensus 91 ~nDi~~ta~~L~lr~~l~~l~~~l~~l~~~L~~ 123 (387)
T cd01360 91 SSDVVDTALALQLREALDIILKDLKELLEVLKK 123 (387)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999874
No 23
>PLN00134 fumarate hydratase; Provisional
Probab=99.42 E-value=5e-13 Score=122.90 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=82.9
Q ss_pred ccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcC----CC------------CchhHHHHHHH
Q psy3415 71 SDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSA----LS------------EEMDSSSLSSG 125 (176)
Q Consensus 71 ~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g----~~------------~EDIH~aiE~~ 125 (176)
.....+..+...+++||++. | +++.|+++ +.++.+.+ |+ .++||+.||.+
T Consensus 31 ~~~~~~i~a~~~v~~A~a~~l~~~G~l~~~~a~~I~~a-----l~ei~~~~~~~~f~~~~~~~g~g~~~~~~v~evie~~ 105 (458)
T PLN00134 31 RMPEPIVRAFGIVKKAAAKVNMEYGLLDPDIGKAIMQA-----ADEVAEGKLDDHFPLVVWQTGSGTQTNMNANEVIANR 105 (458)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHcCcccCCccccccccCCcccccCcHHHHHHHH
Confidence 34466777888899999993 4 67788888 77775542 32 37889999999
Q ss_pred HHHHhcc-cccc--cc------cccchhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhc
Q psy3415 126 GQLRCCD-TGRK--LH------TGRSRNDMIVTDLRLYTRKH-IDIIIELLLTMIKHLTK 175 (176)
Q Consensus 126 Lie~iG~-~gGk--LH------TGRSRNDqvAT~~RL~lRd~-l~~l~~~L~~L~~aLl~ 175 (176)
+++++|+ .||+ +| +||||||++.|++||++|+. +..+...|..|+++|.+
T Consensus 106 l~e~~g~~~g~~~~lHp~d~vh~G~S~nDiv~Ta~~L~~~~~~~~~l~~~l~~l~~~L~~ 165 (458)
T PLN00134 106 AAEILGGPVGEKSPVHPNDHVNRSQSSNDTFPTAMHIAAATEIHSRLIPALKELHESLRA 165 (458)
T ss_pred HHHHhCcccCCccccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999995 8988 88 99999999999999999966 77899999999999864
No 24
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.42 E-value=2.4e-13 Score=124.72 Aligned_cols=113 Identities=6% Similarity=-0.030 Sum_probs=87.7
Q ss_pred CCCCCccccCCC-cccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhh---cC-CC--------C
Q psy3415 58 EVPPPAAPVTPQ-SSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLES---SA-LS--------E 115 (176)
Q Consensus 58 ~~~~~v~~f~sS-i~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~---~g-~~--------~ 115 (176)
.++..+..|+.| =.++..++.+++.++.||+. +| ++++|.++ +.++.+ .| |. .
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~i~~~l~ve~A~a~al~~~Giip~~~a~~I~~~-----l~~i~~~~~~~~~~~~~~~~~~~ 95 (450)
T cd01596 21 QTQRALENFPISGERMPPELIRALALVKKAAALANAELGLLDEEKADAIVQA-----CDEVIAGKLDDQFPLDVWQTGSG 95 (450)
T ss_pred hHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHcCcccCCCcccHHhccCc
Confidence 445556677766 12568889999999999999 44 67778887 655532 12 32 3
Q ss_pred chhHHHHHH----HHHHHhcc-cccc--------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 116 EMDSSSLSS----GGQLRCCD-TGRK--------LHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 116 EDIH~aiE~----~Lie~iG~-~gGk--------LHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
+|+|+++|. ++++++|+ .|+| +|+|||||||++|++||++|+.+..+...+..++++|++
T Consensus 96 ~~~~~~v~~~i~~~~~~~~g~~~g~~~~h~~~~v~h~g~SrnD~v~t~~~L~lr~~l~~l~~~l~~l~~~L~~ 168 (450)
T cd01596 96 TSTNMNVNEVIANRALELLGGKKGKYPVHPNDDVNNSQSSNDDFPPAAHIAAALALLERLLPALEQLQDALDA 168 (450)
T ss_pred ccccchHHHHHHHHHHHHhccccCCcccCCCcccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888887 55577885 5776 669999999999999999999999999999999999874
No 25
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=99.40 E-value=5.4e-13 Score=122.99 Aligned_cols=98 Identities=8% Similarity=0.068 Sum_probs=80.8
Q ss_pred chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhc---C-CC--C------chhHHH----HHHHHH
Q psy3415 73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESS---A-LS--E------EMDSSS----LSSGGQ 127 (176)
Q Consensus 73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~---g-~~--~------EDIH~a----iE~~Li 127 (176)
...++.+.+.+++||+. +| +++.|.++ +.++.+. + |+ + +|+|++ |+++|+
T Consensus 42 ~~~~i~a~~~ve~A~a~~l~~~Glip~~~a~~I~~a-----l~~i~~~~~~d~f~~~~~~~~~~~~~~~n~~~vi~~~l~ 116 (473)
T PRK13353 42 HPELIRAFAQVKKAAALANADLGLLPRRIAEAIVQA-----CDEILAGKLHDQFIVDPIQGGAGTSTNMNANEVIANRAL 116 (473)
T ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhccccCCCCcchhhccccchhcchhhHHHHHHHH
Confidence 47789999999999999 34 57778887 6665322 2 43 1 586666 888999
Q ss_pred HHhcc-ccc--------ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 128 LRCCD-TGR--------KLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 128 e~iG~-~gG--------kLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
+++|+ .|+ ++|+||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus 117 e~~g~~~g~~~~~hp~d~vH~GrSrnD~v~Ta~~L~~r~~l~~l~~~L~~l~~~L~~ 173 (473)
T PRK13353 117 ELLGGEKGDYHYVSPNDHVNMAQSTNDVFPTAIRIAALNLLEGLLAAMGALQDVFEE 173 (473)
T ss_pred HHhCccccCCccCCcccCccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99995 577 4999999999999999999999999999999999999874
No 26
>PRK06390 adenylosuccinate lyase; Provisional
Probab=99.39 E-value=4.8e-13 Score=122.26 Aligned_cols=102 Identities=19% Similarity=0.169 Sum_probs=81.1
Q ss_pred chhhhhhhhhhhhhhHh------hh---cccccccccchhh--hhhhhhcC-CCCchhHHHHHHHHHHHhcccccccccc
Q psy3415 73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNN--IHKLESSA-LSEEMDSSSLSSGGQLRCCDTGRKLHTG 140 (176)
Q Consensus 73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~--L~~l~~~g-~~~EDIH~aiE~~Lie~iG~~gGkLHTG 140 (176)
|...+.+++.++.||++ || +++.|.+++.... ...+.... -..+|+ .++|+.|++++|+.||++|+|
T Consensus 21 ~~~~~~~~l~ve~A~a~al~~~Giip~~~a~~I~~~l~~~~~d~~~~~~~~~~~~~dv-~~~~~~L~~~~g~~~~~iH~G 99 (451)
T PRK06390 21 DENRLRYMLKVEAAIAKAEYEYGIIPRDAFLDIKNAVDSNSVRLERVREIESEIKHDV-MALVEALSEQCSAGKNYVHFG 99 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHHHHHHHHhCCCc-HHHHHHHHHHhhhhhhheecC
Confidence 77789999999999999 44 4566666632210 11111110 114699 899999999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 141 RSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 141 RSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
|||||++.|++||++|+.+..+...|..++++|.+
T Consensus 100 ~SsnDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~ 134 (451)
T PRK06390 100 VTSNDINDTATALQIHDFVSIIKDDIKNLMETLIK 134 (451)
T ss_pred ccHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999864
No 27
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=99.38 E-value=4.4e-13 Score=121.67 Aligned_cols=115 Identities=18% Similarity=0.301 Sum_probs=85.0
Q ss_pred ccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchh---hhhhhhhcC-CCCchh
Q psy3415 52 DELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHN---NIHKLESSA-LSEEMD 118 (176)
Q Consensus 52 ~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~---~L~~l~~~g-~~~EDI 118 (176)
++|++. +.|..+.| |...+.+.+.+++||++ +| +++.|.++ .+. .+..+.... ...+|+
T Consensus 2 ~~~y~~---~~~~~ifs----~~~~~~~~l~ve~A~a~~l~~~giip~~~a~~i~~~-~~~~~~d~~~l~~~~~~~~~~v 73 (435)
T TIGR00928 2 DERYGT---PEMRAIWS----EENKFKTWLDVEVALLRALAELGVIPAEAVKEIRAK-ANFTDVDLARIKEIEAVTRHDV 73 (435)
T ss_pred CcccCc---HHHHHHhC----HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhh-CCCCccCHHHHHHHHHHHCcCh
Confidence 456652 45554432 56778899999999998 33 44555544 110 022221100 113677
Q ss_pred HHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 119 SSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 119 H~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
.++|++|++++|++||++|+||||||++.|++||++|+.+..+...+..++++|.+
T Consensus 74 -~~~e~~l~~~~g~~~~~vh~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~ 129 (435)
T TIGR00928 74 -KAVVYALKEKCGAEGEFIHFGATSNDIVDTALALLLRDALEIILPKLKQLIDRLKD 129 (435)
T ss_pred -HHHHHHHHHHhhhhhhheeecccHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999874
No 28
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=99.36 E-value=8.3e-13 Score=120.41 Aligned_cols=102 Identities=17% Similarity=0.177 Sum_probs=79.3
Q ss_pred chhhhhhhhhhhhhhHh------hh---cccccccccch--hhhhhhhhcCCC-CchhHHHHHHHHHHHh-ccccccccc
Q psy3415 73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHH--NNIHKLESSALS-EEMDSSSLSSGGQLRC-CDTGRKLHT 139 (176)
Q Consensus 73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~--~~L~~l~~~g~~-~EDIH~aiE~~Lie~i-G~~gGkLHT 139 (176)
|...+...+.++.||+. +| .++.|.+++.. .....+....-. .+|+ +++|++|++++ |+.|||+|+
T Consensus 21 ~~~~~~~~l~ve~A~a~~l~~~Giip~~~a~~I~~~l~~~~i~~~~~~~~~~~~~~~v-~~~e~~L~~~~~~~~~~~vH~ 99 (449)
T PRK08540 21 EENKLQKMLDVEAALARAEAELGLIPEEAAEEINRKASTKYVKLERVKEIEAEIHHDI-MAVVKALSEVCEGDAGEYVHF 99 (449)
T ss_pred hHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcccccCCHHHHHHHHHHhCCCc-HHHHHHHHHHhhhhhhcceec
Confidence 77778899999999999 34 56677776322 001111000001 3455 89999999999 579999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 140 GRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 140 GRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
||||||++.|++||++|+.+..+...|..++++|.+
T Consensus 100 g~S~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~ 135 (449)
T PRK08540 100 GATSNDIIDTATALQLKDSLEILEEKLKKLRGVLLK 135 (449)
T ss_pred CccHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999864
No 29
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=99.35 E-value=2.1e-12 Score=119.27 Aligned_cols=100 Identities=9% Similarity=-0.005 Sum_probs=82.8
Q ss_pred ccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-----CC--------CchhHHHH----HH
Q psy3415 71 SDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-----LS--------EEMDSSSL----SS 124 (176)
Q Consensus 71 ~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-----~~--------~EDIH~ai----E~ 124 (176)
.....++.+.+.++.||++ +| +++.|.++ +.++.+.| ++ .||+|+++ |.
T Consensus 37 ~~~~~~i~~~l~ve~A~a~al~e~GiIp~~~a~~I~~a-----l~~~~d~~~~~~~~~l~~~~~~~g~~~~~~v~~vie~ 111 (468)
T TIGR00839 37 SDIPEFVRGMVMVKKAAALANKELGTIPESIANAIVAA-----CDEILNNGKCHDQFPVDVYQGGAGTSVNMNTNEVIAN 111 (468)
T ss_pred CchHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhcccccccccccHHHccCccccccchHHHHHH
Confidence 3347789999999999999 44 67778787 55554412 21 15677775 99
Q ss_pred HHHHHhc-ccccccc--------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 125 GGQLRCC-DTGRKLH--------TGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 125 ~Lie~iG-~~gGkLH--------TGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
.|++++| +.||++| +||||||++.|++||++|+.+..+...|..++++|.+
T Consensus 112 ~l~e~~g~~~g~~~H~~p~~~v~~G~S~nD~v~Ta~~L~lr~~l~~l~~~l~~l~~~L~~ 171 (468)
T TIGR00839 112 LALELMGHQKGEYQYLNPNDHVNKSQSTNDAYPTGFRIAVYSSLIKLVDAINQLRDGFEQ 171 (468)
T ss_pred HHHHHhCccccCeeecCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999 6899999 8999999999999999999999999999999999874
No 30
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=99.33 E-value=3.3e-12 Score=117.29 Aligned_cols=108 Identities=7% Similarity=0.022 Sum_probs=82.3
Q ss_pred cccc-CCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhc---C-CC--------CchhHH
Q psy3415 63 AAPV-TPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESS---A-LS--------EEMDSS 120 (176)
Q Consensus 63 v~~f-~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~---g-~~--------~EDIH~ 120 (176)
+..| .++..++++.+...+.+.+||++ +| +++.|.++ +.++.+. + |+ .+|+|+
T Consensus 26 ~~~f~~~~~~~~~~~i~~~l~ve~A~a~al~~~GiIp~~~a~~I~~a-----l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 100 (455)
T cd01362 26 LENFPIGGERMPRELIRALGLLKKAAAQANAELGLLDEEKADAIVQA-----ADEVIAGKLDDHFPLVVWQTGSGTQTNM 100 (455)
T ss_pred HhccCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhcccccCCceehhhccccccccc
Confidence 4456 45556679999999999999999 44 57778787 6665332 2 32 267777
Q ss_pred HHHHHHH----HHhc---------ccccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3415 121 SLSSGGQ----LRCC---------DTGRKLHTGRSRNDMIVTDLRLYTRKHIDI-IIELLLTMIKHLTK 175 (176)
Q Consensus 121 aiE~~Li----e~iG---------~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~-l~~~L~~L~~aLl~ 175 (176)
+++..+. ++.| ..++++|+||||||++.|++||++|+.+.+ +...+..++++|.+
T Consensus 101 ~v~~~i~~~~~~~~g~~~g~~~~~~~~~~vH~G~SrnDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~ 169 (455)
T cd01362 101 NVNEVIANRAIELLGGVLGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAALALQERLLPALKHLIDALDA 169 (455)
T ss_pred cHHHHHHHHHHHhcCcccCCcCcCCccccccCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7554444 7778 234558999999999999999999999976 99999999998864
No 31
>PRK08470 adenylosuccinate lyase; Provisional
Probab=99.22 E-value=2e-11 Score=111.68 Aligned_cols=101 Identities=18% Similarity=0.191 Sum_probs=79.9
Q ss_pred chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-CCCchhHHHHHHHHHHHhcccccccccccc
Q psy3415 73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-LSEEMDSSSLSSGGQLRCCDTGRKLHTGRS 142 (176)
Q Consensus 73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-~~~EDIH~aiE~~Lie~iG~~gGkLHTGRS 142 (176)
|...+...+.+++||+. +| .++.|.+++. ..+..+.+.. -..+|+ .++++.|++++|+.|+++|+|||
T Consensus 16 ~~~~~~~~l~ve~A~a~al~~~G~Ip~~~a~~I~~~~~-~d~~~~~~~~~~~~~dv-~~~v~~L~e~~g~~~~~vH~G~T 93 (442)
T PRK08470 16 MQAKYDAWLEVEKAAVKAWNKLGLIPDSDCEKICKNAK-FDIARIDEIEKTTKHDL-IAFLTSVSESLGEESRFVHYGMT 93 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhcc-cchHHHHHHHHccCCCh-HHHHHHHHHHccccccceecCCC
Confidence 77788999999999999 44 4566666531 0011111111 225899 57779999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 143 RNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 143 RNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
|||++.|+++|++|+.+..+...+..++++|.+
T Consensus 94 snDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~ 126 (442)
T PRK08470 94 SSDCIDTAVALQMRDSLKLIIEDVKNLMEAIKK 126 (442)
T ss_pred hhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864
No 32
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=99.21 E-value=3e-11 Score=111.24 Aligned_cols=100 Identities=13% Similarity=0.053 Sum_probs=79.6
Q ss_pred ccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--------Cc----hhHHHHHHH
Q psy3415 71 SDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--------EE----MDSSSLSSG 125 (176)
Q Consensus 71 ~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--------~E----DIH~aiE~~ 125 (176)
..+.+++.+.+.+++||+. +| .++.|.++ +.++.+.+ |+ .+ ++|..|+.+
T Consensus 36 ~~~~~~i~a~~~ve~A~a~a~~~~Giip~~~a~~I~~a-----~~~i~~~~~~~~~~~~~~~~~~~~~~~m~~~~via~~ 110 (458)
T TIGR00979 36 KMPLELIHAFAILKKAAAIVNEDLGKLDAKKADAIVQA-----ADEILAGKLDDHFPLVVWQTGSGTQSNMNVNEVIANR 110 (458)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhccccCCCceecccccccccccccHHHHHHHH
Confidence 3458899999999999999 44 57778887 65553322 22 13 456666669
Q ss_pred HHHHhc-ccccc--ccc------ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhc
Q psy3415 126 GQLRCC-DTGRK--LHT------GRSRNDMIVTDLRLYTRKHI-DIIIELLLTMIKHLTK 175 (176)
Q Consensus 126 Lie~iG-~~gGk--LHT------GRSRNDqvAT~~RL~lRd~l-~~l~~~L~~L~~aLl~ 175 (176)
|++++| +.||+ +|+ ||||||++.|++||++|+.+ ..+...|..++++|.+
T Consensus 111 l~e~~g~~~g~~~~vH~~d~vn~G~S~nDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~ 170 (458)
T TIGR00979 111 AIELLGGKLGSKQPVHPNDHVNKSQSSNDTFPTAMHIAAVLAIKNQLIPALENLKKTLDA 170 (458)
T ss_pred HHHHcCcccCCCceeCCCCCCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 56656 997 99999999999999999999 5999999999999864
No 33
>PRK09285 adenylosuccinate lyase; Provisional
Probab=99.15 E-value=7.7e-11 Score=108.57 Aligned_cols=119 Identities=8% Similarity=0.049 Sum_probs=83.8
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhhh-ccccc--ccccchhh---hhhhhhcCC---C------C
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKIH-DSTPQ--TSTIHHNN---IHKLESSAL---S------E 115 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvII-~A~~I--l~al~~~~---L~~l~~~g~---~------~ 115 (176)
+++||++.+++....| .|...+.+++.+..||+... +...+ +..+.... |.+... .| + -
T Consensus 12 ~~~ry~~~~~e~~~~~-----s~~~~~~~~l~vE~A~a~a~a~~g~~~~ip~~~~~~~~~i~~~~~-~~~~~d~~~i~~~ 85 (456)
T PRK09285 12 LDGRYASKTAALRPIF-----SEFGLIRYRVQVEVEWLIALAAHPGIPEVPPFSAEANAFLRAIVE-NFSEEDAARIKEI 85 (456)
T ss_pred CccccCCCCHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHH-hhCcccHHHHHHH
Confidence 3467776544333344 35888999999999999843 22111 11111011 222211 13 2 1
Q ss_pred chh--H--HHHHHHHHHHhc------ccccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3415 116 EMD--S--SSLSSGGQLRCC------DTGRKLHTGRSRNDMIVTDLRLYTRKHIDI-IIELLLTMIKHLTK 175 (176)
Q Consensus 116 EDI--H--~aiE~~Lie~iG------~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~-l~~~L~~L~~aLl~ 175 (176)
|+. | .++|..|.+++| +.|+++|+||||||++.|+++|++|+.+.. +...+..++++|.+
T Consensus 86 e~~~~hdv~a~~~~l~~~~~~~~~~~~~~~~vH~G~Ts~Di~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~ 156 (456)
T PRK09285 86 ERTTNHDVKAVEYFLKEKLAGLPELEAVSEFIHFACTSEDINNLSHALMLKEAREEVLLPALRELIDALKE 156 (456)
T ss_pred HHHhCCChHHHHHHHHHHhcccCcchhHHhHccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455 6 899999999997 578999999999999999999999999998 99999999999864
No 34
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=98.96 E-value=9.7e-10 Score=98.09 Aligned_cols=98 Identities=17% Similarity=0.157 Sum_probs=76.9
Q ss_pred chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhh----hcC--C-CCchhHHHHHHHHHHHhc-cccc
Q psy3415 73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLE----SSA--L-SEEMDSSSLSSGGQLRCC-DTGR 135 (176)
Q Consensus 73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~----~~g--~-~~EDIH~aiE~~Lie~iG-~~gG 135 (176)
|...+...+.+.+|.+. +| .++.|.++ +.++. +.+ . ..++.+..+++.|.+++| +.|+
T Consensus 26 ~~~~i~a~l~vE~A~a~a~~~~G~Ip~~~a~~I~~a-----~~~~~~d~~~~~~~~~~~g~~v~~~v~~l~~~~g~~~~~ 100 (351)
T PRK05975 26 AEADIAAMLAFEAALAEAEAEHGIIPAEAAERIAAA-----CETFEPDLAALRHATARDGVVVPALVRQLRAAVGEEAAA 100 (351)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----hccCCCCHHHHhhHHHhcCCcHHHHHHHHHHHhCchhhC
Confidence 66778888888988887 45 45666666 32221 100 0 124556799999999998 5799
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 136 KLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 136 kLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
++|+||||||++.|+++|++|+.+..+...+..++++|.+
T Consensus 101 ~vH~G~TsnDi~dTa~~L~lr~~l~~l~~~L~~l~~~L~~ 140 (351)
T PRK05975 101 HVHFGATSQDVIDTSLMLRLKAASEILAARLGALIARLDA 140 (351)
T ss_pred cccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999864
No 35
>PRK07492 adenylosuccinate lyase; Provisional
Probab=98.90 E-value=2.1e-09 Score=98.41 Aligned_cols=59 Identities=17% Similarity=0.140 Sum_probs=55.6
Q ss_pred chhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 116 EMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 116 EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
-|| .++|+.|++++|+.|+++|+||||||++.|+++|++|+.+..+...|..++++|.+
T Consensus 71 h~v-~a~~~~L~~~~g~~~~~vH~G~Ts~Di~dTa~~L~lr~~~~~l~~~l~~l~~~L~~ 129 (435)
T PRK07492 71 HDV-IAFLTHLAEFVGPDARFVHQGMTSSDVLDTCLNVQLVRAADLLLADLDRVLAALKK 129 (435)
T ss_pred CCh-HHHHHHHHHHhhHhhhhhcCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456 79999999999999999999999999999999999999999999999999999864
No 36
>PRK07380 adenylosuccinate lyase; Provisional
Probab=98.79 E-value=9.6e-09 Score=94.06 Aligned_cols=59 Identities=22% Similarity=0.295 Sum_probs=55.2
Q ss_pred chhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 116 EMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 116 EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
-|| .++.+.|.+++|+.|+++|+||||||++.|+++|++|+.+..+...|..++++|.+
T Consensus 68 h~v-~a~v~~l~~~~g~~~~~vH~G~Ts~Di~dTa~~L~lr~~l~~l~~~l~~l~~~L~~ 126 (431)
T PRK07380 68 HDV-IAFLTNVNEYVGDAGRYIHLGMTSSDVLDTGLALQLVASLDLLLEELEDLIQAIRY 126 (431)
T ss_pred CCh-HHHHHHHHHHHHHhhccccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567 67888999999999999999999999999999999999999999999999999864
No 37
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=98.69 E-value=2.8e-08 Score=91.14 Aligned_cols=59 Identities=15% Similarity=0.095 Sum_probs=52.5
Q ss_pred chhHHHHHHHHHHHhc------ccccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3415 116 EMDSSSLSSGGQLRCC------DTGRKLHTGRSRNDMIVTDLRLYTRKHIDI-IIELLLTMIKHLTK 175 (176)
Q Consensus 116 EDIH~aiE~~Lie~iG------~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~-l~~~L~~L~~aLl~ 175 (176)
-|+ .++|+.|++++| +.|+++|+||||||++.|++||++|+.+.+ +...+..++++|.+
T Consensus 69 hdv-~al~~~l~~~~g~~~~~~~~~~~vH~G~TsnDi~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~ 134 (425)
T cd01598 69 HDV-KAVEYFLKEKFETLGLLKKIKEFIHFACTSEDINNLAYALMIKEARNEVILPLLKEIIDSLKK 134 (425)
T ss_pred CCc-HHHHHHHHHHhcccccchhhhhHhccCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567 799999999997 467899999999999999999999999965 46999999998864
No 38
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=98.53 E-value=1.6e-07 Score=86.02 Aligned_cols=59 Identities=17% Similarity=0.169 Sum_probs=54.6
Q ss_pred chhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 116 EMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 116 EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
-|| .+++..|.+++|+.|+|+|+|||+||.+.|.++|++|+.+..+...|..++++|.+
T Consensus 70 hdv-~a~~~~l~~~~~~~~~~vH~G~TS~Di~dta~~L~lr~a~~~l~~~L~~l~~~L~~ 128 (436)
T cd03302 70 HDV-MAHVHAFGLLCPAAAGIIHLGATSCFVTDNTDLIQIRDALDLILPKLAAVIDRLAE 128 (436)
T ss_pred cCc-hHHHHHHHHHhHhccCeeeeCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577 57777899999999999999999999999999999999999999999999999874
No 39
>PLN02848 adenylosuccinate lyase
Probab=98.51 E-value=2.1e-07 Score=86.10 Aligned_cols=59 Identities=10% Similarity=0.130 Sum_probs=53.5
Q ss_pred chhHHHHHHHHHHHhc---c---cccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3415 116 EMDSSSLSSGGQLRCC---D---TGRKLHTGRSRNDMIVTDLRLYTRKHIDI-IIELLLTMIKHLTK 175 (176)
Q Consensus 116 EDIH~aiE~~Lie~iG---~---~gGkLHTGRSRNDqvAT~~RL~lRd~l~~-l~~~L~~L~~aLl~ 175 (176)
-|+ .++|..|.+++| + .++++|+||||||++.|+++|++|+.+.. +...|..++++|.+
T Consensus 94 hdv-~a~~~~l~~~~~~~~~~~~~~~~vH~G~TsqDi~dTa~~L~lr~a~~~~l~~~L~~l~~aL~~ 159 (458)
T PLN02848 94 HDV-KAVEYFLKQKCKSHPELAKVLEFFHFACTSEDINNLSHALMLKEGVNSVVLPTMDEIIKAISS 159 (458)
T ss_pred CCc-HHHHHHHHHHhccccchhhhhCcccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466 789999999996 2 56999999999999999999999999999 99999999999864
No 40
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=98.34 E-value=1e-06 Score=80.90 Aligned_cols=102 Identities=18% Similarity=0.214 Sum_probs=68.8
Q ss_pred chhhhhhhhhhhhhhHh------hh---cccccccccch--hhhhhhhhcC-CCCchhHHHHHHHHHHHhc----ccccc
Q psy3415 73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHH--NNIHKLESSA-LSEEMDSSSLSSGGQLRCC----DTGRK 136 (176)
Q Consensus 73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~--~~L~~l~~~g-~~~EDIH~aiE~~Lie~iG----~~gGk 136 (176)
|...+.....+-+|=+. +| .++.|.++... -.+..+.... -..-++ ..+.+.|.+.+| +.+++
T Consensus 23 ~~~~i~a~l~ve~A~A~a~~~~G~ip~~~a~~I~~a~~~~~~d~~~~~~~~~~~~~~~-~~lv~~l~~~~~~~~~~~~~~ 101 (452)
T PRK09053 23 DRATVQRMLDFEAALARAEAACGVIPAAAVAPIEAACDAERLDLDALAQAAALAGNLA-IPLVKQLTAQVAARDAEAARY 101 (452)
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHhccccCCCHHHHHHHHhhcCCch-HHHHHHHHHHhcccCcchhcc
Confidence 56666666666666555 34 34445444100 0011221111 111233 455667788886 57999
Q ss_pred cccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 137 LHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 137 LHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
+|+||||||++.|++||++|+.+..+...|..++++|.+
T Consensus 102 vH~G~SsnDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~ 140 (452)
T PRK09053 102 VHWGATSQDIIDTGLVLQLRDALDLLEPDLDRLCDALAT 140 (452)
T ss_pred ccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999874
No 41
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=98.08 E-value=7.6e-06 Score=66.65 Aligned_cols=54 Identities=33% Similarity=0.396 Sum_probs=49.1
Q ss_pred HHHHHHHHhcc-ccccc-----ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 122 LSSGGQLRCCD-TGRKL-----HTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 122 iE~~Lie~iG~-~gGkL-----HTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
+|..|++++|. .+|+. |.||||||++.|++++++|+.+..+...+..+..++..
T Consensus 16 i~~~L~~~~~~~~~~~~~~~~~h~g~s~~d~~~t~~~~~~~~~l~~l~~~l~~~~~~l~~ 75 (231)
T cd01594 16 VEEVLAGRAGELAGGLHGSALVHKGRSSNDIGTTALRLALRDALDDLLPLLKALIDALAL 75 (231)
T ss_pred HHHHHHHHHHHHhccccCCCCCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999996 56666 89999999999999999999999999999999988763
No 42
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=92.92 E-value=0.31 Score=45.75 Aligned_cols=59 Identities=22% Similarity=0.302 Sum_probs=54.9
Q ss_pred chhHHHHHHHHHHHhc-ccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 116 EMDSSSLSSGGQLRCC-DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 116 EDIH~aiE~~Lie~iG-~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
-|| .+++..|.+.+| +.++++|-|=..||.+-|..-|-+|+.+.-+...+..++++|.+
T Consensus 71 HdV-~a~v~~l~e~~~~~~~~~VH~GaTS~DI~Dta~~L~lk~a~~ii~~~l~~l~~~L~~ 130 (438)
T COG0015 71 HDV-KALVRALAEKVGEEASEYVHFGATSQDIIDTALALQLKEALDLILPDLKRLIEALAE 130 (438)
T ss_pred CCc-HHHHHHHHHhcCcccccceecccchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 578 899999999999 78899999999999999999999999999999999999988853
No 43
>COG3855 Fbp Uncharacterized protein conserved in bacteria [Carbohydrate transport and metabolism]
Probab=42.86 E-value=16 Score=35.66 Aligned_cols=32 Identities=47% Similarity=0.709 Sum_probs=26.7
Q ss_pred ccCCCCCCchhhhhhhchHHHHHHhhhccCCC
Q psy3415 6 TTSAPEDPTEEVEEEEPLIDQLLASYRTQSPV 37 (176)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 (176)
.|-.|++|.+-.+||+.+|+.|++|++..--.
T Consensus 361 pTinp~~P~~L~~EE~evi~kl~~sf~~sekL 392 (648)
T COG3855 361 PTINPEQPYELLEEEEEVIDKLLASFQNSEKL 392 (648)
T ss_pred CcCCCCChHHhhHHHHHHHHHHHHHhhhhHHH
Confidence 35579999999999999999999999864433
No 44
>COG4981 Enoyl reductase domain of yeast-type FAS1 [Lipid metabolism]
Probab=39.57 E-value=30 Score=34.34 Aligned_cols=66 Identities=21% Similarity=0.280 Sum_probs=46.4
Q ss_pred hhhhhhhchHHHHHHhh---hccCCCCchhhhhhhhhhccccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh
Q psy3415 15 EEVEEEEPLIDQLLASY---RTQSPVSRDQYNFIGRHKNIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK 89 (176)
Q Consensus 15 ~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv 89 (176)
+-++.+++.|..||+.| |||---.+|---|++-|+|-+ + + ..|.+-|+.|-+.|+-.--.=.+|++
T Consensus 410 ~~ldkp~~aia~ll~aYP~A~t~~L~~~Da~~F~~LC~~p~----K-P----VpfVPvID~d~~rwwr~DSLWQS~~~ 478 (717)
T COG4981 410 SLLDKPDEAIAKLLAAYPDARTQQLNPADAAFFLSLCRNPG----K-P----VPFVPVIDKDVRRWWRSDSLWQSHDV 478 (717)
T ss_pred hhccChHHHHHHHHHhCcchhhhcCChhhhHHHHHHhcCCC----C-C----CCccccchhHHHHHhccchhhhhhhc
Confidence 45677788999999999 677777788889999999865 2 1 35778887776655433223345544
No 45
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=37.92 E-value=1.3e+02 Score=28.92 Aligned_cols=96 Identities=15% Similarity=0.100 Sum_probs=65.7
Q ss_pred hhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--C------chhH----HHHHHHHHH
Q psy3415 74 EGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--E------EMDS----SSLSSGGQL 128 (176)
Q Consensus 74 ~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--~------EDIH----~aiE~~Lie 128 (176)
.++......+-+|-+. .| -++.|++| .+++.... |. + --++ +-|=.+-.|
T Consensus 44 p~~i~a~~~VKKAaAlaN~elg~l~~~~~~aIv~A-----CDeil~Gk~~dqFvvD~~QGGAGTS~NMN~NEVIAN~AlE 118 (471)
T COG1027 44 PEFIRAMAMVKKAAALANKELGALPKEIADAIVKA-----CDEILDGKCHDQFVVDVYQGGAGTSTNMNANEVIANRALE 118 (471)
T ss_pred HHHHHHHHHHHHHHHHhhhhhCCCCHHHHHHHHHH-----HHHHHcCccccccceeccccCCCccccccHHHHHHHHHHH
Confidence 5556666667776665 23 36667777 77776633 22 0 1122 234456677
Q ss_pred Hhcc-cccc--cc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3415 129 RCCD-TGRK--LH------TGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLT 174 (176)
Q Consensus 129 ~iG~-~gGk--LH------TGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl 174 (176)
.+|- -|-. +| .+-|-||-.-|.+|+-+-..+..+...+..|++++-
T Consensus 119 ~lG~~KGeY~~~hPndhVNmsQSTND~yPTa~ria~~~~l~~L~~al~~L~~af~ 173 (471)
T COG1027 119 LLGHEKGEYQYLHPNDHVNMSQSTNDAYPTAFRIAVYKSLRKLIDALEDLIEAFE 173 (471)
T ss_pred HhcCCCCceeeeCCccccchhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7884 4443 33 477999999999999999999999999999998874
No 46
>PF01402 RHH_1: Ribbon-helix-helix protein, copG family; InterPro: IPR002145 CopG, also known as RepA, is responsible for the regulation of plasmid copy number. It binds to the repAB promoter and controls synthesis of the plasmid replication initiator protein RepB. Many bacterial transcription regulation proteins bind DNA through a 'helix-turn-helix' motif, nevertheless CopG displays a fully defined HTH-motif structure that is involved not in DNA-binding, but in the maintenance of the intrinsic dimeric functional structure and cooperativity [, ].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2BJ3_B 2BJ8_A 2BJ1_A 2BJ9_A 2BJ7_B 1EA4_L 2CPG_C 1B01_B 2BA3_A 2K9I_B ....
Probab=26.87 E-value=72 Score=19.03 Aligned_cols=17 Identities=41% Similarity=0.741 Sum_probs=14.6
Q ss_pred ccchhHHHHHHHHHHHH
Q psy3415 140 GRSRNDMIVTDLRLYTR 156 (176)
Q Consensus 140 GRSRNDqvAT~~RL~lR 156 (176)
|+|+++.+...++-|+.
T Consensus 22 g~s~s~~ir~ai~~~l~ 38 (39)
T PF01402_consen 22 GRSRSELIREAIREYLE 38 (39)
T ss_dssp TSSHHHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHh
Confidence 49999999999888875
No 47
>cd04388 RhoGAP_p85 RhoGAP_p85: RhoGAP (GTPase-activator protein [GAP] for Rho-like small GTPases) domain present in the p85 isoforms of the regulatory subunit of the class IA PI3K (phosphatidylinositol 3'-kinase). This domain is also called Bcr (breakpoint cluster region protein) homology (BH) domain. Class IA PI3Ks are heterodimers, containing a regulatory subunit (p85) and a catalytic subunit (p110) and are activated by growth factor receptor tyrosine kinases (RTKs); this activation is mediated by the p85 subunit. p85 isoforms, alpha and beta, contain a C-terminal p110-binding domain flanked by two SH2 domains, an N-terminal SH3 domain, and a RhoGAP domain flanked by two proline-rich regions. Small GTPases cluster into distinct families, and all act as molecular switches, active in their GTP-bound form but inactive when GDP-bound. The Rho family of GTPases activates effectors involved in a wide variety of developmental processes, including regulation of cytoskeleton formation, cell p
Probab=22.34 E-value=1.6e+02 Score=24.74 Aligned_cols=12 Identities=17% Similarity=0.313 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHH
Q psy3415 146 MIVTDLRLYTRK 157 (176)
Q Consensus 146 qvAT~~RL~lRd 157 (176)
-||+.++.|+|+
T Consensus 68 ~va~~LK~ylRe 79 (200)
T cd04388 68 ALADALKRYLLD 79 (200)
T ss_pred HHHHHHHHHHHh
Confidence 488888888886
No 48
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=21.79 E-value=3e+02 Score=26.45 Aligned_cols=97 Identities=13% Similarity=0.126 Sum_probs=58.8
Q ss_pred chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--------C----chhHHHHHHHHH
Q psy3415 73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--------E----EMDSSSLSSGGQ 127 (176)
Q Consensus 73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--------~----EDIH~aiE~~Li 127 (176)
-+++.++...+-+|-+. .+ .+..|+.+ -+++.+.. || . =-+-+-|-.+-+
T Consensus 40 p~~~I~Al~~lKkaaA~~N~~LG~L~~~~a~aI~~A-----adev~~Gk~d~~FPl~VwQTGSGTqsNMN~NEVIanrA~ 114 (462)
T COG0114 40 PREIIRALGLLKKAAAQVNADLGLLDPEKADAIIAA-----ADEVLAGKHDDHFPLDVWQTGSGTQSNMNVNEVIANRAS 114 (462)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH-----HHHHHcCcccCCCCeEEEecCCCccccccHHHHHHHHHH
Confidence 35566666666555544 23 35556666 55555443 43 0 123334555667
Q ss_pred HHhcc-cccc--cc------cccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Q psy3415 128 LRCCD-TGRK--LH------TGRSRNDMIVTDLRLYTRKHI-DIIIELLLTMIKHLT 174 (176)
Q Consensus 128 e~iG~-~gGk--LH------TGRSRNDqvAT~~RL~lRd~l-~~l~~~L~~L~~aLl 174 (176)
+.+|. .|++ +| .+-|.||-+-|++|+..-..+ .+++-.|..|+++|-
T Consensus 115 e~~gg~~g~~~~VHPNDhVN~sQSSNDtfPTAmhIAa~~~v~~~LiPaL~~L~~~L~ 171 (462)
T COG0114 115 ELLGGELGSKKPVHPNDHVNMSQSSNDTFPTAMHIAAVLAVVNRLIPALKHLIKTLA 171 (462)
T ss_pred HHhCcccCCCCCCCCCCcCCcccccCcchhhHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 77774 4543 44 478999999999998765554 457777777777764
Done!