Query psy3415
Match_columns 176
No_of_seqs 206 out of 1075
Neff 4.4
Searched_HMMs 29240
Date Sat Aug 17 00:27:19 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3415.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3415hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tj7_A Argininosuccinate lyase 99.8 1.5E-21 5.1E-26 176.7 5.7 124 51-175 4-141 (457)
2 2e9f_A Argininosuccinate lyase 99.8 1E-20 3.4E-25 171.4 5.0 120 51-175 6-142 (462)
3 1k7w_A Delta 2 crystallin; eye 99.8 3.9E-20 1.3E-24 167.9 5.7 121 50-175 10-147 (468)
4 1fur_A Fumarase C, FUMC; hydro 99.6 2.6E-15 9E-20 136.4 8.8 113 58-175 25-173 (467)
5 3bhg_A Adenylosuccinate lyase; 99.6 1.4E-15 4.8E-20 137.5 6.2 118 51-175 15-159 (459)
6 1vdk_A Fumarase C, fumarate hy 99.6 4.7E-15 1.6E-19 134.6 8.1 113 58-175 24-173 (466)
7 2qga_B Adenylosuccinate lyase; 99.6 2.2E-15 7.4E-20 136.5 5.4 119 51-175 11-155 (465)
8 1jsw_A L-aspartase, L-aspartat 99.5 3E-15 1E-19 136.3 4.8 117 54-175 22-176 (478)
9 3c8t_A Fumarate lyase; structu 99.5 5.6E-15 1.9E-19 133.2 5.5 116 51-175 8-136 (451)
10 2ptr_A Adenylosuccinate lyase; 99.5 7.1E-15 2.4E-19 133.0 5.6 118 51-175 12-156 (462)
11 1q5n_A 3-carboxy-CIS,CIS-mucon 99.5 9.6E-15 3.3E-19 131.6 5.4 112 51-175 8-142 (454)
12 1dof_A Adenylosuccinate lyase; 99.5 2.9E-14 9.9E-19 127.1 6.9 113 51-175 6-128 (403)
13 1yfm_A Fumarase, YFUM; lyase, 99.5 4.3E-14 1.5E-18 129.4 7.9 132 39-175 29-198 (488)
14 1c3c_A Protein (adenylosuccina 99.5 2.9E-14 1E-18 127.7 6.6 101 73-175 15-125 (429)
15 2pfm_A Adenylosuccinate lyase; 99.4 8.6E-14 2.9E-18 125.4 5.1 107 67-175 19-137 (444)
16 1re5_A 3-carboxy-CIS,CIS-mucon 99.4 2.7E-13 9.3E-18 122.0 6.2 103 72-175 20-138 (450)
17 4adm_A Fumarase C, fumarate hy 99.3 2.1E-12 7E-17 118.7 8.6 130 39-175 33-194 (495)
18 3r6q_A Aspartase; aspartate am 99.3 5.3E-12 1.8E-16 115.0 9.2 103 68-175 37-173 (468)
19 4eei_A Adenylosuccinate lyase; 99.3 1.4E-11 4.9E-16 111.1 10.0 98 73-175 16-126 (438)
20 2fel_A 3-carboxy-CIS,CIS-mucon 99.2 5.1E-12 1.7E-16 111.3 5.4 103 73-175 26-140 (359)
21 1yis_A Adenylosuccinate lyase; 99.2 1.8E-11 6.2E-16 111.0 6.8 118 51-175 11-140 (478)
22 3ocf_A Fumarate lyase:delta cr 99.2 6.4E-11 2.2E-15 108.4 8.4 98 73-175 62-193 (478)
23 3e04_A Fumarase, fumarate hydr 99.1 2.8E-10 9.6E-15 104.7 9.3 99 72-175 68-200 (490)
24 3gtd_A Fumarase C, fumarate hy 99.0 8E-10 2.7E-14 101.4 9.6 100 71-175 60-194 (482)
25 2j91_A Adenylosuccinate lyase; 99.0 6.8E-10 2.3E-14 101.7 6.7 117 51-175 39-166 (503)
26 4hgv_A Fumarase C, fumarate hy 98.2 3.8E-06 1.3E-10 77.1 9.1 99 72-175 72-205 (495)
27 2gpe_A Bifunctional protein PU 47.4 16 0.00053 22.5 2.9 20 139-158 25-44 (52)
28 1g6u_A Domain swapped dimer; d 38.4 19 0.00065 23.0 2.1 24 104-128 8-31 (48)
29 2ay0_A Bifunctional PUTA prote 21.2 70 0.0024 20.6 2.7 20 138-157 24-43 (58)
No 1
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=99.83 E-value=1.5e-21 Score=176.68 Aligned_cols=124 Identities=16% Similarity=0.132 Sum_probs=106.5
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcCC--C---Cc
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSAL--S---EE 116 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g~--~---~E 116 (176)
.||||++.+++.+..|++|++||+.++.+++.+++||+. +| .++.|.+++... ..++.+..| + .+
T Consensus 4 ~~gr~~~~~~~~~~~f~~s~~~d~~l~~~~i~~~~A~a~a~~~~Gii~~~~a~~I~~a~~~i-~~~~~~~~~~~~~~~~~ 82 (457)
T 1tj7_A 4 WGGRFTQAADQRFKQFNDSLRFDYRLAEQDIVGSVAWSKALVTVGVLTAEEQAQLEEALNVL-LEDVRARPQQILESDAE 82 (457)
T ss_dssp CCTTCSSCCCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH-HHHHHHCGGGGGGSCCS
T ss_pred cccccccchHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH-HhhHhcCCcCcCCCCCC
Confidence 689999999999999999999999999999999999999 34 567777773211 112222224 2 59
Q ss_pred hhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 117 MDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 117 DIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
|+|+++|++|++++|+.|+++|+||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus 83 dv~~~v~~~l~e~~g~~g~~vH~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~ 141 (457)
T 1tj7_A 83 DIHSWVEGKLIDKVGQLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVE 141 (457)
T ss_dssp SHHHHHHHHHHHHHGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999864
No 2
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=99.81 E-value=1e-20 Score=171.44 Aligned_cols=120 Identities=26% Similarity=0.271 Sum_probs=99.8
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhh----cCCC---
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLES----SALS--- 114 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~----~g~~--- 114 (176)
.|+||++.+++.+..|+.|+.+|+.++.+++.+++||+. +| .++.|.++ +.++.. ..|+
T Consensus 6 ~g~r~~~~t~~~~~~f~~s~~~d~~l~~~~i~v~~A~a~a~~~~Gii~~~~a~~I~~a-----~~~i~~~~~~~~f~~~~ 80 (462)
T 2e9f_A 6 WGGRFGEGPDALAARFNASLAFDRALWREDLWQNRVHARMLHAVGLLSAEELEAILKG-----LDRIEEEIEAGTFPWRE 80 (462)
T ss_dssp --------CCSHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHHHHHHHHHTCSCCCG
T ss_pred cCCccchhhHHHHHhccCCCccCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhhHhcccCCcCC
Confidence 589999999999999999999999999999999999999 34 46777777 444432 2255
Q ss_pred -CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 115 -EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 115 -~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
.+|+|+++|+++++++|+.|+++|+||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus 81 ~~~dv~~~~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~ 142 (462)
T 2e9f_A 81 ELEDVHMNLEARLTELVGPPGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALRRVLVR 142 (462)
T ss_dssp GGCSHHHHHHHHHHHHHCTTHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3999999999999999999999999999999999999999999999999999999999864
No 3
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=99.79 E-value=3.9e-20 Score=167.85 Aligned_cols=121 Identities=25% Similarity=0.281 Sum_probs=99.5
Q ss_pred ccccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhh----cCCC--
Q psy3415 50 NIDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLES----SALS-- 114 (176)
Q Consensus 50 ~i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~----~g~~-- 114 (176)
-+|+||++.+++.+..|+.|+.+|+.++.+++.+.+||+. +| .++.|.++ +.++.. ..|+
T Consensus 10 ~~~~r~~~~~~~~~~~f~~s~~~d~~~~~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a-----~~~i~~~~~~~~f~~~ 84 (468)
T 1k7w_A 10 LWGGRFSGSTDPIMEKLNSSIAYDQRLSEVDIQGSMAYAKALEKAGILTKTELEKILSG-----LEKISEEWSKGVFVVK 84 (468)
T ss_dssp ---------CCHHHHHHHCCHHHHGGGHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHHHHHHHHHTCCCCC
T ss_pred ccccccchhHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhhhhcccCccC
Confidence 3789999999989999999999999999999999999999 34 56778777 444432 2254
Q ss_pred --CchhHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 115 --EEMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 115 --~EDIH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
.+|+|+++|++|++++|+.|+++|+||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus 85 ~~~~dv~m~~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~l~lr~~l~~l~~~L~~L~~~L~~ 147 (468)
T 1k7w_A 85 QSDEDIHTANERRLKELIGDIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147 (468)
T ss_dssp TTCCSHHHHHHHHHHHHHCGGGGGGGTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchHHHHHHHHHHHccccccceecCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4999999999999999999999999999999999999999999999999999999999864
No 4
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=99.58 E-value=2.6e-15 Score=136.41 Aligned_cols=113 Identities=11% Similarity=0.074 Sum_probs=97.0
Q ss_pred CCCCCccccCCCccc-chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--------C
Q psy3415 58 EVPPPAAPVTPQSSD-DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--------E 115 (176)
Q Consensus 58 ~~~~~v~~f~sSi~~-D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--------~ 115 (176)
.+.+.+..|+.|..+ |+.++.+++.+.+||+. +| .+++|.++ +.++.+.. |+ .
T Consensus 25 ~t~r~~~~f~~s~~~~~~~~i~a~~~v~~A~a~a~~~~Gii~~~~a~~I~~a-----~~~i~~~~~~~~f~~~~~q~g~~ 99 (467)
T 1fur_A 25 QTQRSLEHFRISTEKMPTSLIHALALTKRAAAKVNEDLGLLSEEKASAIRQA-----ADEVLAGQHDDEFPLAIWQTGSG 99 (467)
T ss_dssp HHHHHHHHCCCSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHHHHTTTTGGGCCCBSSSCTTC
T ss_pred hhHHHHHhccCCCccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhccccccccchhhhcccc
Confidence 556678899999999 99999999999999999 44 57788888 66665432 43 2
Q ss_pred chhHHHHHHHH----HHHhc-ccccc--cc------cccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3415 116 EMDSSSLSSGG----QLRCC-DTGRK--LH------TGRSRNDMIVTDLRLYTRKHIDI-IIELLLTMIKHLTK 175 (176)
Q Consensus 116 EDIH~aiE~~L----ie~iG-~~gGk--LH------TGRSRNDqvAT~~RL~lRd~l~~-l~~~L~~L~~aLl~ 175 (176)
+|+|+++|..+ ++++| +.|+| +| +||||||++.|++|||+|+.+.. +...|..|+++|.+
T Consensus 100 ~~~~mn~~~via~~a~e~~G~~~g~~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~ 173 (467)
T 1fur_A 100 TQSNMNMNEVLANRASELLGGVRGMERKVHPNDDVNKSQSSNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNE 173 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCSSTTCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHhCcccccccccCchhhcccCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999966 89998 78888 99 99999999999999999999998 99999999999864
No 5
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=99.57 E-value=1.4e-15 Score=137.52 Aligned_cols=118 Identities=12% Similarity=0.043 Sum_probs=91.6
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhhh-ccccc--c--------cccchhhhhhhhhcC-------
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKIH-DSTPQ--T--------STIHHNNIHKLESSA------- 112 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvII-~A~~I--l--------~al~~~~L~~l~~~g------- 112 (176)
++|||++++++....|+ |+.++.+++.+++||+..+ ....| + +.|.+. +.++....
T Consensus 15 ~~gRy~~~~~~~~~~fs-----d~~~~~~~l~ve~a~~~ala~~~gi~~ip~i~~~~~~~i~~~-~~~~~~~d~~~~~~~ 88 (459)
T 3bhg_A 15 IDGRYVNKTRALSPYFS-----EFALTYYRLMVEIKWFESLAANDTIPEVPALDNKARKFLSDL-ISNFNESEAEKIKEF 88 (459)
T ss_dssp TTTTTHHHHGGGTTTSS-----HHHHHHHHHHHHHHHHHHHHTCTTCTTSCCCCHHHHHHHHHH-HHTCCHHHHHHHHHH
T ss_pred ccccccCChHHHHHHcC-----HHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCHHHHHHHHHH-HHHhccccHHHHHHH
Confidence 78999998777777776 9999999999999999966 33233 1 111110 11111001
Q ss_pred --CCCchhHHHHHHHHHHHhc------ccccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415 113 --LSEEMDSSSLSSGGQLRCC------DTGRKLHTGRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK 175 (176)
Q Consensus 113 --~~~EDIH~aiE~~Lie~iG------~~gGkLHTGRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~ 175 (176)
-..+|| +++|..|++++| ++|+++|+||||||++.|++||++|+.+. .+...|..|+++|.+
T Consensus 89 e~~~~~Dv-~a~e~~l~e~~g~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~ 159 (459)
T 3bhg_A 89 EKQTNHDV-KAVEYYLQDKFQENEQLKSCVAFIHFACTSEDINNLAYALMIKQAIAQVIQPTIAEIMGSITL 159 (459)
T ss_dssp TTTCSSHH-HHHHHHHHHHHTTSTTGGGGGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHhcCCCh-HHHHHHHHHHhcccccCchhhhhhcCCCCHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 124899 999999999998 36899999999999999999999999999 599999999999864
No 6
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=99.56 E-value=4.7e-15 Score=134.61 Aligned_cols=113 Identities=9% Similarity=0.003 Sum_probs=96.4
Q ss_pred CCCCCccccCCCcc-c--chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC-------
Q psy3415 58 EVPPPAAPVTPQSS-D--DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS------- 114 (176)
Q Consensus 58 ~~~~~v~~f~sSi~-~--D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~------- 114 (176)
.+.+.+..|+.|.. + |+.++.+++.+.+||+. +| .+++|.++ +.++.+.. |+
T Consensus 24 ~t~~~~~~f~~s~~~~~~~~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a-----~~~i~~~~~~~~f~~~~~q~~ 98 (466)
T 1vdk_A 24 QTQRSLENFRIGTDRFRMPLEIIRAYGMLKKAAARANLELGELPEEIAKAIIQA-----AEEVVQGKWDDHFPLVVFQTG 98 (466)
T ss_dssp HHHHHHHHCCSSTTTCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHHHHTTTTGGGCCCBSSSCT
T ss_pred hhHHHHHhccCCCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhcccccCCCchhhhcc
Confidence 55677889999976 6 89999999999999999 44 57778887 66655432 44
Q ss_pred -CchhHHHHHHHH----HHHhc-ccc-cccc------cccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415 115 -EEMDSSSLSSGG----QLRCC-DTG-RKLH------TGRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK 175 (176)
Q Consensus 115 -~EDIH~aiE~~L----ie~iG-~~g-GkLH------TGRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~ 175 (176)
.+|+|+++|..+ ++++| +.| +++| +||||||++.|++|||+|+.+. .+...|..|+++|.+
T Consensus 99 ~~~~~~mn~~~via~~a~e~~g~~~g~~~lHp~~~Vn~g~SsnD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~ 173 (466)
T 1vdk_A 99 SGTQTNMNVNEVIANRASEILGKPLGSKYAHPNDHVNRGQSSNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTA 173 (466)
T ss_dssp TCHHHHHHHHHHHHHHHHHHTTCCTTSCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccccccccHHHHHHHHHHHHhCccccccccccccCcCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 389999999977 89999 678 9999 9999999999999999999998 899999999999864
No 7
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=99.55 E-value=2.2e-15 Score=136.50 Aligned_cols=119 Identities=8% Similarity=0.030 Sum_probs=89.9
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhhh-cccccccccchhhhhhhhh--cCC--------------
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKIH-DSTPQTSTIHHNNIHKLES--SAL-------------- 113 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvII-~A~~Il~al~~~~L~~l~~--~g~-------------- 113 (176)
++|||++++++....| +|+.++.+++.+++||++.+ +...|+.......+..+.+ ..|
T Consensus 11 ~~gRy~~~~~~~~~~~-----sd~~~~~~~i~ve~A~~~ala~~~gii~~~~~~~i~~l~~~~~~~~~~d~~~i~~~e~~ 85 (465)
T 2qga_B 11 IDGRYKKACGELSAFF-----SEHALIKHRIIVEVRWLLFLNEEELFFEKVTDHSVEVLNQIATNITDSDIARVKAIEEE 85 (465)
T ss_dssp TTTTTHHHHGGGGGTS-----SHHHHHHHHHHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHH
T ss_pred ccccccCCcHHHHHHh-----CHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHhhccccHHHHHHHhhc
Confidence 7899988766544444 59999999999999999965 2213332111100111110 011
Q ss_pred CCchhHHHHHHHHHHHhc--------ccccccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415 114 SEEMDSSSLSSGGQLRCC--------DTGRKLHTGRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK 175 (176)
Q Consensus 114 ~~EDIH~aiE~~Lie~iG--------~~gGkLHTGRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~ 175 (176)
..+|| +++|+.|++++| +.|+++|+||||||++.|++||++|+.+. .+...|..|+++|.+
T Consensus 86 ~~hDV-~a~e~~l~e~~g~~~~~~~~~~~~~iH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~ 155 (465)
T 2qga_B 86 TNHDV-KAVEYFVKEKLKNSKREDLLKIKEYVHYLCTSEDINNVAYATCLKACLNDVVIPCLEKIMLKLKD 155 (465)
T ss_dssp HSCHH-HHHHHHHHHHHHTSCCHHHHHHGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred cCCCh-HHHHHHHHHHhcccccccchhhhhhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14999 999999999998 67999999999999999999999999999 699999999999864
No 8
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=99.54 E-value=3e-15 Score=136.25 Aligned_cols=117 Identities=9% Similarity=-0.009 Sum_probs=96.9
Q ss_pred ccCCCCCCCccccCCCc-cc--chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhh-hc----CCC--
Q psy3415 54 LLGNEVPPPAAPVTPQS-SD--DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLE-SS----ALS-- 114 (176)
Q Consensus 54 Rl~g~~~~~v~~f~sSi-~~--D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~-~~----g~~-- 114 (176)
+.++.+.+.+..|+.|. .+ |+.++.+++.+++||+. +| .++.|.++ +.++. +. +|+
T Consensus 22 ~~g~~t~r~~~~f~~s~~~~~~~~~~i~~~~~ve~A~a~a~~~~Gii~~~~a~~I~~a-----~~~i~~~~~~~~~f~v~ 96 (478)
T 1jsw_A 22 YYGVHTLRAIENFYISNNKISDIPEFVRGMVMVKKAAAMANKELQTIPKSVANAIIAA-----CDEVLNNGKCMDQFPVD 96 (478)
T ss_dssp CCCHHHHHHHHHCCSCSCCSCCTTSHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH-----HHHHSTTTCSTTCCCCC
T ss_pred ccchHHHHHHHhCCCcCccccCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHHHhcchhccCCccc
Confidence 44445677888999986 66 89999999999999999 34 56778777 55555 32 244
Q ss_pred ------CchhHHHHHH----HHHHHhcc-ccc--ccc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 115 ------EEMDSSSLSS----GGQLRCCD-TGR--KLH------TGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 115 ------~EDIH~aiE~----~Lie~iG~-~gG--kLH------TGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
.+|+|+++|. ++++++|+ .|+ ++| +||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus 97 ~~~~g~~~~~~mnv~~vIa~~~~e~~g~~~g~~~~lHpnd~Vn~g~SsnDv~~Ta~~L~lr~~l~~l~~~L~~L~~~L~~ 176 (478)
T 1jsw_A 97 VYQGGAGTSVNMNTNEVLANIGLELMGHQKGEYQYLNPNDHVNKCQSTNDAYPTGFRIAVYSSLIKLVDAINQLREGFER 176 (478)
T ss_dssp SSCCSTTHHHHHHHHHHHHHHHHHTTTSCCTTSCSSCCCCCCSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhccCcccccccHHHHHHHHHHHHcCccccccccccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3899999996 88899995 676 899 8999999999999999999999999999999999864
No 9
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=99.52 E-value=5.6e-15 Score=133.22 Aligned_cols=116 Identities=13% Similarity=0.113 Sum_probs=89.2
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccc--hhhhhhhhhcC--CCCch
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIH--HNNIHKLESSA--LSEEM 117 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~--~~~L~~l~~~g--~~~ED 117 (176)
++|||+. +.|..+ -.|..++.+++.+.+||+. +| .++.|.+++. +-.+..+ +.+ -+.+|
T Consensus 8 ~~~ry~~---~~~~~~----~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~~~~~~~~~~~-~~~~~~~~~d 79 (451)
T 3c8t_A 8 YGRSFAD---DKMREL----FSAQSFISRCVETEVALARAQARLGIIPEDAAAGITAAARTFAPEMERL-RDDTEIVGYP 79 (451)
T ss_dssp SSCCCSC---HHHHHH----TSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHCCCCHHHH-HHHHHHHSSS
T ss_pred cccccCc---HHHHHH----cCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHhhhcCCCHHHH-HHHhhcCCCc
Confidence 5678877 344433 2389999999999999999 34 4566666621 0001111 111 12589
Q ss_pred hHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 118 DSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 118 IH~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
| .++|+.|++++|+.|+++|+||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus 80 V-ia~~~~l~e~~g~~g~~vH~g~SsnDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~ 136 (451)
T 3c8t_A 80 I-LPLVEQLSAHAGEAGKYLHWGATTQDIMDTATVLQIRDGLALISRRIESVRKALAA 136 (451)
T ss_dssp H-HHHHHHHHHHHGGGGGGSSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred H-HHHHHHHHHHcccccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9 69999999999999999999999999999999999999999999999999999864
No 10
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=99.52 E-value=7.1e-15 Score=133.04 Aligned_cols=118 Identities=10% Similarity=0.072 Sum_probs=92.1
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhhh-ccccc----------ccccchhhhhhhhhcCC------
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKIH-DSTPQ----------TSTIHHNNIHKLESSAL------ 113 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvII-~A~~I----------l~al~~~~L~~l~~~g~------ 113 (176)
++|||++++++.+..|+ |+.++.+++.+.+||+..+ +...| .++|.+. +.++....+
T Consensus 12 ~~gRy~~~~~~~~~~fs-----d~~~i~~~~~ve~A~a~ala~~g~i~~ip~i~~~~a~~I~~~-~~~i~~g~~~~~~~~ 85 (462)
T 2ptr_A 12 VDGRYGDKVSALRGIFS-----EYGLLKFRVQVEVRWLQKLAAHAAIKEVPAFAADAIGYLDAI-VASFSEEDAARIKTI 85 (462)
T ss_dssp TTTTTGGGSGGGGGTTS-----HHHHHHHHHHHHHHHHHHHHHCTTCTTSCCCCHHHHHHHHHH-HHTCCHHHHHHHHHH
T ss_pred ccccccCchHHHHHHCC-----cHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCHHHHHHHHHH-HHHhccCCHHHHHhh
Confidence 78999998887777887 9999999999999999955 22122 1221110 222211111
Q ss_pred ---CCchhHHHHHHHHHHHhcc------cccccccccchhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhc
Q psy3415 114 ---SEEMDSSSLSSGGQLRCCD------TGRKLHTGRSRNDMIVTDLRLYTRKHIDI-IIELLLTMIKHLTK 175 (176)
Q Consensus 114 ---~~EDIH~aiE~~Lie~iG~------~gGkLHTGRSRNDqvAT~~RL~lRd~l~~-l~~~L~~L~~aLl~ 175 (176)
..+|| +++|+.|++++|+ .++++|+||||||++.|++||++|+.+.+ +...|..|+++|.+
T Consensus 86 ~~~~~~dv-~av~~~l~e~~g~~g~~~~~~~~vH~g~SsnDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~ 156 (462)
T 2ptr_A 86 ERTTNHDV-KAVEYFLKEKVAEIPELHAVSEFIHFACTSEDINNLSHALMLKTARDEVILPYWRQLIDGLKD 156 (462)
T ss_dssp HHHHSCHH-HHHHHHHHHHHTTSHHHHTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred ccccCCCH-HHHHHHHHHHhccccCCcchhhhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 14799 9999999999984 58999999999999999999999999996 99999999999864
No 11
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=99.50 E-value=9.6e-15 Score=131.64 Aligned_cols=112 Identities=13% Similarity=0.085 Sum_probs=89.2
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhh--------hcC-
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLE--------SSA- 112 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~--------~~g- 112 (176)
++|||+. +.|..+ -.|+.++.+++.+.+||+. +| .++.|.++ +.++. +.+
T Consensus 8 ~~~ry~~---~~~~~~----~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a-----~~~i~~~~~~~~~~~~~ 75 (454)
T 1q5n_A 8 YASLFYQ---RDVTEI----FSDRALVSYMVEAEVALAQAQAQVGVIPQSAATVIQRA-----AKTAIDKIDFDALATAT 75 (454)
T ss_dssp THHHHSC---HHHHHH----TSHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HTTHHHHCCHHHHHHHH
T ss_pred cccccCc---HHHHHH----cCcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----HHHhhhcCCHHHHHHHh
Confidence 5667776 344433 2389999999999999999 34 46667776 33221 111
Q ss_pred -CCCchhHHHHHHHHHHHh----cccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 113 -LSEEMDSSSLSSGGQLRC----CDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 113 -~~~EDIH~aiE~~Lie~i----G~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
-+.+|| .++|+.|++++ |+.|+++|+||||||++.|++|||+|+.+..+...|..|+++|.+
T Consensus 76 ~~~~~dV-ia~~~~l~e~~g~~~g~~~~~vH~g~SsnD~~~Ta~~L~~r~~l~~l~~~l~~L~~~L~~ 142 (454)
T 1q5n_A 76 GLAGNIA-IPFVKQLTAIVKDADEDAARYVHWGATSQDILDTACILQCRDALAIVQNQVQQCYETALS 142 (454)
T ss_dssp HHHSSSH-HHHHHHHHHHHHTTCTTGGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCCcH-HHHHHHHHHHhccccCCccccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 125899 79999999999 889999999999999999999999999999999999999999864
No 12
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=99.49 E-value=2.9e-14 Score=127.06 Aligned_cols=113 Identities=17% Similarity=0.033 Sum_probs=85.4
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcC-CCCchhHH
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSA-LSEEMDSS 120 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g-~~~EDIH~ 120 (176)
+++|++. +.|.. +-.|+.++.+++.+.+||+.. | .++.|.++ +-.+..+.... -+.+|| .
T Consensus 6 ~~~ry~~---~~~~~----i~sd~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a--~~d~~~~~~~~~~~~~dV-i 75 (403)
T 1dof_A 6 FDWRYGS---EEIRR----LFTNEAIINAYLEVERALVCALEELGVAERGCCEKVNKA--SVSADEVYRLERETGHDI-L 75 (403)
T ss_dssp GGTTSSC---HHHHT----TSSHHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHC--CCCTTTC--------CHH-H
T ss_pred cccccCc---HHHHH----HcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHC--CCCHHHHHHHhhccCCcH-H
Confidence 6778877 34433 445999999999999999994 3 34444443 10011221111 135899 6
Q ss_pred HHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 121 SLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 121 aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
++|+.|++++| |+++|+||||||++.|++||++|+.+..+...+..|+++|.+
T Consensus 76 a~~~~l~e~~G--g~~vH~g~SsnD~~~Ta~~l~~r~~l~~l~~~l~~L~~~L~~ 128 (403)
T 1dof_A 76 SLVLLLEQKSG--CRYVHYGATSNDIIDTAWALLIRRALAAVKEKARAVGDQLAS 128 (403)
T ss_dssp HHHHHHHHHHC--CSCTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcC--CCcccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 899999999999999999999999999999999999999864
No 13
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=99.48 E-value=4.3e-14 Score=129.45 Aligned_cols=132 Identities=12% Similarity=0.036 Sum_probs=99.3
Q ss_pred chhhhhhhhhhcccccc-CCCCCCCccccCCCcc---cchhhhhhhhhhhhhhHh------hh---cccccccccchhhh
Q psy3415 39 RDQYNFIGRHKNIDELL-GNEVPPPAAPVTPQSS---DDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNI 105 (176)
Q Consensus 39 ~~~~~~~~~~~~i~~Rl-~g~~~~~v~~f~sSi~---~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L 105 (176)
|-....+|.+.==...+ ++.+.+.+..|+.|.. +|+.++.+++.+.+||+. +| .++.|.++ +
T Consensus 29 r~e~d~~g~~~vp~~~~~g~~t~r~~~~f~~s~~~~~~~~~~i~a~~~v~~A~A~a~~~~Gil~~~~a~aI~~a-----~ 103 (488)
T 1yfm_A 29 RTETDAFGEIHVPADKYWGAQTQRSFQNFKIGGARERMPLPLVHAFGVLKKSAAIVNESLGGLDPKISKAIQQA-----A 103 (488)
T ss_dssp EEECSSSCCEEEESSCCCCHHHHHHHTTCCTTGGGGBCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH-----H
T ss_pred CcccccCCCcCCCccchhchHHHHHHHhccCCCCcccCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-----H
Confidence 44445566555444433 3355777889999987 689999999999999999 34 57788888 6
Q ss_pred hhhhhcC----CC--------CchhHHHHHHHH----HHHhc-ccc-cccc------cccchhHHHHHHHHHHHHHHHH-
Q psy3415 106 HKLESSA----LS--------EEMDSSSLSSGG----QLRCC-DTG-RKLH------TGRSRNDMIVTDLRLYTRKHID- 160 (176)
Q Consensus 106 ~~l~~~g----~~--------~EDIH~aiE~~L----ie~iG-~~g-GkLH------TGRSRNDqvAT~~RL~lRd~l~- 160 (176)
.++.+.. |+ .+|+|+++|..+ ++++| +.| +++| +||||||++.|++||++|+.+.
T Consensus 104 ~ei~~~~~~~~f~~~~~q~g~~t~~nmn~~evia~~a~e~lG~~~g~~~vHp~d~Vn~g~SsNDv~~Ta~~L~lr~~l~~ 183 (488)
T 1yfm_A 104 DEVASGKLDDHFPLVVFQTGSGTQSNMNANEVISNRAIEILGGKIGSKQVHPNNHCNQSQSSNDTFPTVMHIAASLQIQN 183 (488)
T ss_dssp HHHHHTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHC---------CCCCCCCTTTCCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhcccccCCCcchhhccccccccccHHHHHHHHHHHHhCccccCCccCcccCcCCCCChhhHHHHHHHHHHHHHHHH
Confidence 6665432 44 379999999866 58889 577 9999 9999999999999999999998
Q ss_pred HHHHHHHHHHHHHhc
Q psy3415 161 IIIELLLTMIKHLTK 175 (176)
Q Consensus 161 ~l~~~L~~L~~aLl~ 175 (176)
.+...|..|+++|.+
T Consensus 184 ~l~~~L~~L~~~L~~ 198 (488)
T 1yfm_A 184 ELIPELTNLKNALEA 198 (488)
T ss_dssp THHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999864
No 14
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=99.48 E-value=2.9e-14 Score=127.65 Aligned_cols=101 Identities=14% Similarity=0.080 Sum_probs=81.8
Q ss_pred chhhhhhhhhhhhhhHhh------h---cccccccccchhhhhhhhhcC-CCCchhHHHHHHHHHHHhcccccccccccc
Q psy3415 73 DEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNNIHKLESSA-LSEEMDSSSLSSGGQLRCCDTGRKLHTGRS 142 (176)
Q Consensus 73 D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~L~~l~~~g-~~~EDIH~aiE~~Lie~iG~~gGkLHTGRS 142 (176)
|+.++.+++.+.+||+.. | .++.|.+++ +-.+..+.+.. -+.+|| .++|+.|++++|+.|+++|+|||
T Consensus 15 d~~~i~~~~~v~~A~a~a~~~~Gii~~~~a~~I~~a~-~~d~~~i~~~~~~~~~dV-ia~~~~l~e~~g~~g~~vH~g~S 92 (429)
T 1c3c_A 15 EEAKYRRWLEVELAVTRAYEELGMIPKGVTERIRNNA-KIDVELFKKIEEKTNHDV-VAFVEGIGSMIGEDSRFFHYGLT 92 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCTTHHHHHHHHC-CCCHHHHHHHHHHHCCHH-HHHHHHHHHHHGGGGGGTTTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhC-CCCHHHHHHHHhccCCCh-HHHHHHHHHHcCcccccccCCCC
Confidence 899999999999999993 4 455565552 10012222211 125899 69999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 143 RNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 143 RNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
|||++.|++||++|+.+..+...|..|+++|.+
T Consensus 93 snD~~~Ta~~l~lr~~~~~l~~~l~~l~~~L~~ 125 (429)
T 1c3c_A 93 SSDVLDTANSLALVEAGKILLESLKEFCDVLWE 125 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999864
No 15
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=99.42 E-value=8.6e-14 Score=125.40 Aligned_cols=107 Identities=13% Similarity=0.086 Sum_probs=85.2
Q ss_pred CCCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC-CCCchhHHHHHHHHHHHh--cccc
Q psy3415 67 TPQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA-LSEEMDSSSLSSGGQLRC--CDTG 134 (176)
Q Consensus 67 ~sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g-~~~EDIH~aiE~~Lie~i--G~~g 134 (176)
.+++-.|+.++.+++.+.+||+. +| .++.|.+++ +-.+..+.+.. -+.+|| .++|+.|++++ |+.|
T Consensus 19 ~~~i~sd~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~-~~d~~~i~~~~~~~~~dV-ia~~~~l~e~~g~g~~g 96 (444)
T 2pfm_A 19 MGAIWTEENKFKAWLEVEILACEAWAELGDIPKEDVKKIREHA-SFDIDRIYEIEKETRHDV-VAFTRAVSETPALGEER 96 (444)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHC-CCCHHHHHHHHHHHCCHH-HHHHHHHHTCTTCCGGG
T ss_pred HHHHcChHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHhC-CCCHHHHHHHhccCCCCH-HHHHHHHHHHcCCCccc
Confidence 44566699999999999999999 34 456666552 10012222211 135899 79999999999 7899
Q ss_pred cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 135 RKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 135 GkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
+++|+||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus 97 ~~vH~g~SsnDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~ 137 (444)
T 2pfm_A 97 KWVHYGLTSTDVVDTALSYILKQANEIILKDLENFVSILAN 137 (444)
T ss_dssp GGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999864
No 16
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=99.39 E-value=2.7e-13 Score=122.05 Aligned_cols=103 Identities=16% Similarity=0.123 Sum_probs=81.6
Q ss_pred cchhhhhhhhhhhhhhHhh------h---cccccccccchhh--hhhhhhcC-CCCchhHHHHHHHHHHHhc---cc-cc
Q psy3415 72 DDEGDCYAGNKVNLDDVKI------H---DSTPQTSTIHHNN--IHKLESSA-LSEEMDSSSLSSGGQLRCC---DT-GR 135 (176)
Q Consensus 72 ~D~~i~~~di~v~lAHvvI------I---~A~~Il~al~~~~--L~~l~~~g-~~~EDIH~aiE~~Lie~iG---~~-gG 135 (176)
.|..++.+++.+.+||+.. | .++.|.+++.... +..+.... -+.+||| ++|+.|++++| +. ++
T Consensus 20 s~~~~i~~~~~v~~A~a~a~~~~G~i~~~~a~~I~~a~~~~~f~~~~~~~~~~~~~~dV~-a~~~~l~e~~g~~~~~~~~ 98 (450)
T 1re5_A 20 SDRGRLQGMLDFEAALARAEASAGLVPHSAVAAIEAACQAERYDTGALANAIATAGNSAI-PLVKALGKVIATGVPEAER 98 (450)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHCCGGGSCHHHHHHHHHHHSSSHH-HHHHHHHHHHHHHCGGGGG
T ss_pred CcHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhcCCCCHHHHHHHHhccCccHH-HHHHHHHHHhCCCCCcccc
Confidence 4899999999999999993 4 4566666521100 11111111 1258998 99999999999 87 99
Q ss_pred ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 136 KLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 136 kLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
++|+||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus 99 ~vh~g~SsnD~~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~ 138 (450)
T 1re5_A 99 YVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTLSQ 138 (450)
T ss_dssp GTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCCChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999864
No 17
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=99.33 E-value=2.1e-12 Score=118.70 Aligned_cols=130 Identities=11% Similarity=0.052 Sum_probs=96.9
Q ss_pred chhhhhhhhhhccccccCC-CCCCCccccCCCcc-cchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhh
Q psy3415 39 RDQYNFIGRHKNIDELLGN-EVPPPAAPVTPQSS-DDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHK 107 (176)
Q Consensus 39 ~~~~~~~~~~~~i~~Rl~g-~~~~~v~~f~sSi~-~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~ 107 (176)
|-....+|.+.==.+.+=| .+...+..|+-|.. .++.+..++..+.+||+. +| .++.|.++ +++
T Consensus 33 r~e~d~~g~~~vp~~~~~G~~t~r~~~~F~is~~~~~~~~I~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a-----~~e 107 (495)
T 4adm_A 33 RIEHDTMGEVRVPAKALWRAQTQRAVENFPISGRGLERTQIRALGLLKGACAQVNSDLGLLAPEKADAIIAA-----AAE 107 (495)
T ss_dssp EEEEETTEEEEEETTCSCCHHHHHHHHHCCSSSCBCCHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHH
T ss_pred CCccCcCCCccCChhhhcCchhHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHH
Confidence 4445566665544444444 44566778886642 345555566667999998 45 57788888 677
Q ss_pred hhhcC----CC--------CchhHHHHHHHHHHHh--ccccccccc------ccchhHHHHHHHHHHHHHHHH-HHHHHH
Q psy3415 108 LESSA----LS--------EEMDSSSLSSGGQLRC--CDTGRKLHT------GRSRNDMIVTDLRLYTRKHID-IIIELL 166 (176)
Q Consensus 108 l~~~g----~~--------~EDIH~aiE~~Lie~i--G~~gGkLHT------GRSRNDqvAT~~RL~lRd~l~-~l~~~L 166 (176)
+.++. |+ .+|+|+++|..+..+. | |+++|+ ||||||++.|++||++|+.+. .+...|
T Consensus 108 i~~~~~~~~f~~~~~q~g~gt~~nmnvnevia~ra~lG--G~~vH~~dhVn~g~SsNDv~~Ta~~L~lr~~l~~~l~~~L 185 (495)
T 4adm_A 108 IADGQHDDQFPIDVFQTGSGTSSNMNTNEVIASIAAKG--GVTLHPNDDVNMSQSSNDTFPTATHIAATEAAVAHLIPAL 185 (495)
T ss_dssp HHTTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHHHT--TCCCCTTTTTTTTCCHHHHHHHHHHHHHHHHHHHTHHHHH
T ss_pred HHhCcccCCCCcchhhccccccccccHHHHHHHHHHhC--CCccCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 65432 54 2799999999999954 8 888998 899999999999999999997 599999
Q ss_pred HHHHHHHhc
Q psy3415 167 LTMIKHLTK 175 (176)
Q Consensus 167 ~~L~~aLl~ 175 (176)
..|+++|.+
T Consensus 186 ~~L~~~L~~ 194 (495)
T 4adm_A 186 QQLHDALAA 194 (495)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999999864
No 18
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=99.30 E-value=5.3e-12 Score=115.02 Aligned_cols=103 Identities=9% Similarity=-0.035 Sum_probs=84.0
Q ss_pred CCcccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--------CchhHHHHH---
Q psy3415 68 PQSSDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--------EEMDSSSLS--- 123 (176)
Q Consensus 68 sSi~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--------~EDIH~aiE--- 123 (176)
+....++.++.++..+.+||+. +| .++.|.++ ++++.+.. |+ .+++|++++
T Consensus 37 ~~~~~~~~~i~a~~~vk~A~A~a~~~~Gil~~~~a~aI~~a-----~~~i~~~~~~~~f~~~~~~~g~gt~~nmnvnevi 111 (468)
T 3r6q_A 37 TGYRIHPELIKSLGIVKKSAALANMEVGLLDKEVGQYIVKA-----ADEVIEGKWNDQFIVDPIQGGAGTSINMNANEVI 111 (468)
T ss_dssp SCCCCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH-----HHHHHTTTTGGGCCSCSSCSSTTHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHHhCccccCCCccHHhccccccccccHHHHH
Confidence 3345578999999999999999 45 57788888 66665432 54 257887765
Q ss_pred -HHHHHHhcccccc---ccc------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 124 -SGGQLRCCDTGRK---LHT------GRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 124 -~~Lie~iG~~gGk---LHT------GRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
.++++++|+.+|+ +|+ ||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus 112 a~~~~e~~G~~~g~y~~vHpndhVn~g~SsnDv~~Ta~~L~~r~~l~~l~~~L~~L~~~L~~ 173 (468)
T 3r6q_A 112 ANRALELMGEEKGNYSKISPNSHVNMSQSTNDAFPTATHIAVLSLLNQLIETTKYMQQEFMK 173 (468)
T ss_dssp HHHHHHHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCcCccCCccCCCCCCChHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6788899976554 996 999999999999999999999999999999999864
No 19
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=99.27 E-value=1.4e-11 Score=111.10 Aligned_cols=98 Identities=15% Similarity=0.174 Sum_probs=76.7
Q ss_pred chhhhhhhhhhhhhhHhhhcccccccccchhhhhhhhhc-CCC-----------CchhHHHHHHHHHHHhccc-cccccc
Q psy3415 73 DEGDCYAGNKVNLDDVKIHDSTPQTSTIHHNNIHKLESS-ALS-----------EEMDSSSLSSGGQLRCCDT-GRKLHT 139 (176)
Q Consensus 73 D~~i~~~di~v~lAHvvII~A~~Il~al~~~~L~~l~~~-g~~-----------~EDIH~aiE~~Lie~iG~~-gGkLHT 139 (176)
|...|...+.+..||+..... .++.... ..++.+. .|+ ..||| ++|+.|++++|+. ||++|+
T Consensus 16 ~~~~~~~~l~ve~Ala~a~~~-GlIp~~~---~~~i~~~~~~d~~~i~~~e~~~~hdV~-a~~~~l~e~~g~~~~~~iH~ 90 (438)
T 4eei_A 16 DENKYAKMLEVELAILEALED-RMVPKGT---AAEIRARAQIRPERVDEIEKVTKHDII-AFCTSIAEQFTAETGKFFHF 90 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHGGG-TTSCTTH---HHHHHHHCCCCHHHHHHHHHHHSCHHH-HHHHHHHTTSCTTTTTTTTC
T ss_pred hHHHHHHHHHHHHHHHHHHhc-CCCCHHH---HHHHHhhCCCCHHHHHHHHHhcCCCHH-HHHHHHHHHcCHHhhcccCC
Confidence 667888889999999995522 3332211 1122111 122 47996 8999999999987 999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 140 GRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 140 GRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus 91 G~SsnDv~~Ta~~L~lr~~~~~l~~~L~~l~~~L~~ 126 (438)
T 4eei_A 91 GVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLT 126 (438)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999864
No 20
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=99.24 E-value=5.1e-12 Score=111.32 Aligned_cols=103 Identities=18% Similarity=0.187 Sum_probs=78.0
Q ss_pred chhhhhhhhhhhhhhHh------hh---cccccccccchhh--hhhhhhcCCCCchhHHHHHHHHHHHhc-ccccccccc
Q psy3415 73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNN--IHKLESSALSEEMDSSSLSSGGQLRCC-DTGRKLHTG 140 (176)
Q Consensus 73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~--L~~l~~~g~~~EDIH~aiE~~Lie~iG-~~gGkLHTG 140 (176)
|...+.+...+.+||+. +| .+++|.+++.... +..+....-..++.+.++|+.|++++| +.|+++|+|
T Consensus 26 ~~~~i~~~~~ve~A~a~a~~~~G~i~~~~a~~I~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vH~G 105 (359)
T 2fel_A 26 AKADIDAMIRFETALAQAEAEASIFADDEAEAIVSGLSEFAADMSALRHGVAKDGVVVPELIRQMRAAVAGQAADKVHFG 105 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHTCCCCHHHHHHHHHHHSSSHHHHHHHHHTTSCGGGGGGTTTT
T ss_pred cHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHhccccHHHHHhhccccCCcHHHHHHHHHHHcCccccchhcCC
Confidence 77778888899999999 34 4555655521100 111101000125677899999999998 579999999
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 141 RSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 141 RSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
|||||++.|++||++|+.+..+...|..|+++|.+
T Consensus 106 ~SsnDv~~Ta~~l~lr~~l~~l~~~L~~l~~~L~~ 140 (359)
T 2fel_A 106 ATSQDVIDTSLMLRLKMAAEIIATRLGHLIDTLGD 140 (359)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999864
No 21
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=99.19 E-value=1.8e-11 Score=111.05 Aligned_cols=118 Identities=11% Similarity=0.031 Sum_probs=81.8
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------h--h---cccccccccchhhhhhhhhc-CCCCchh
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------I--H---DSTPQTSTIHHNNIHKLESS-ALSEEMD 118 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------I--I---~A~~Il~al~~~~L~~l~~~-g~~~EDI 118 (176)
+++|+++. +.|..+-| |...+...+.+.+||+. + | +++.|.+++.......+... ....+||
T Consensus 11 l~~ry~~~--~~m~~~fs----~~~~~~~~~~~e~Ala~a~~~~Gl~~i~~~~~~~I~~~l~~i~~~~~~~~e~~~~~DV 84 (478)
T 1yis_A 11 LSTRYCKN--SPLVSILS----ETNKATLWRQLWIWLAEAEKELGLKQVTQDAIDEMKSNRDVFDWPFIRSEERKLKHDV 84 (478)
T ss_dssp HHHTTTTT--CTHHHHTS----HHHHHHHHHHHHHHHHHHHHHTTCTTSCHHHHHHHHHTTTCCCHHHHHHHHHHSSCHH
T ss_pred cccccCCh--HHHHHHcC----chHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCHHHHhhHHHhcCCcH
Confidence 67788763 22553322 44467777788999987 4 5 34555555221101111000 0125899
Q ss_pred HHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 119 SSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 119 H~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
|..+|. |++++|+.||++|+|||+||.+.|...||+|+.+..+...|..|+++|.+
T Consensus 85 ~a~v~~-l~e~~g~~~~~iH~G~TS~Di~~ta~~L~lr~~l~~l~~~L~~L~~~L~~ 140 (478)
T 1yis_A 85 MAHNHA-FGKLCPTAAGIIHLGATSCFVQDNADLIAYRDSIDHILKRFATVIDRLAA 140 (478)
T ss_dssp HHHHHH-HHHHCTTTGGGTTTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhhhhchhheeCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999995 89999999999999997777666666699999999999999999999864
No 22
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=99.15 E-value=6.4e-11 Score=108.42 Aligned_cols=98 Identities=12% Similarity=0.041 Sum_probs=81.5
Q ss_pred chhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--------CchhHHHHH----HHHH
Q psy3415 73 DEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--------EEMDSSSLS----SGGQ 127 (176)
Q Consensus 73 D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--------~EDIH~aiE----~~Li 127 (176)
...+..+...+.+||+. +| .++.|.++ ++++.+.. |+ .+++|++++ ++++
T Consensus 62 ~~~~i~a~~~vk~A~A~an~~~G~l~~~~a~aI~~a-----~~ei~~g~~~~~f~~~~~q~g~gt~~nmnvnevia~~a~ 136 (478)
T 3ocf_A 62 IPALVRALAMVKKAAATANYKLRQLPEPKYAAIVAA-----CDDIIDGLLMEQFVVDVFQGGAGTSSNMNANEVIANRAL 136 (478)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHH-----HHHHHTTTTGGGCCCBTTCSSTTHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-----HHHHHcCccccCCCcchhhccCCccccchHHHHHHHHHH
Confidence 36889999999999999 45 57788888 66665422 54 268888765 6788
Q ss_pred HHhcc-cccc--cc------cccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 128 LRCCD-TGRK--LH------TGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 128 e~iG~-~gGk--LH------TGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
+++|+ .|++ +| +||||||++.|++||++|+.+..+...|..|+++|.+
T Consensus 137 e~~G~~~G~~~~vHpndhVn~g~SsNDv~~Ta~~L~~~~~l~~L~~~L~~L~~~L~~ 193 (478)
T 3ocf_A 137 EHLGRPRGDYQTIHPNDDVNMSQSTNDVYPTAVRLALLLSQNQVQTALHRLIAAFEA 193 (478)
T ss_dssp HHTTCCTTCTTTSCCCCCCTTTCCHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH
T ss_pred HHhchhcCCCCccCCCCCCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99995 6777 99 9999999999999999999999999999999999864
No 23
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=99.08 E-value=2.8e-10 Score=104.68 Aligned_cols=99 Identities=11% Similarity=0.110 Sum_probs=80.3
Q ss_pred cchhhhhhhhhhhhhhHhhh--------cccccccccchhhhhhhhhcC----CC--------CchhHH----HHHHHHH
Q psy3415 72 DDEGDCYAGNKVNLDDVKIH--------DSTPQTSTIHHNNIHKLESSA----LS--------EEMDSS----SLSSGGQ 127 (176)
Q Consensus 72 ~D~~i~~~di~v~lAHvvII--------~A~~Il~al~~~~L~~l~~~g----~~--------~EDIH~----aiE~~Li 127 (176)
...++..+...+.+|++... .++.|+++ ++++.+.. |+ .+++++ .||++++
T Consensus 68 ~~~~~i~a~~~vkkAaA~an~~~Gl~~~~a~aI~~a-----~~ev~~g~~~~~Fp~~~~q~Gsgt~~nmn~NEvia~ra~ 142 (490)
T 3e04_A 68 MPTPVIKAFGILKRAAAEVNQDYGLDPKIANAIMKA-----ADEVAEGKLNDHFPLVVWQTGSGTQTNMNVNEVISNRAI 142 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHHGGGGTCCHHHHHHHHHH-----HHHHHTTSCGGGCCCBSSSCTTCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH-----HHHHHcCCcccCCceeeecCCCCCcccccHHHHHHHHHH
Confidence 34688999999999999943 45667777 77776543 54 145544 6999999
Q ss_pred HHhc-cccccc--cc------ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415 128 LRCC-DTGRKL--HT------GRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK 175 (176)
Q Consensus 128 e~iG-~~gGkL--HT------GRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~ 175 (176)
+++| +.|+|+ |+ ||||||++.|++|||+|+.+. .+...|..|+++|.+
T Consensus 143 e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~~~L~~L~~aL~~ 200 (490)
T 3e04_A 143 EMLGGELGSKIPVHPNDHVNKSQSSNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDA 200 (490)
T ss_dssp HHTTCCTTSCCSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHhCcccCCCCCCCcccccCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999 688875 87 999999999999999999986 699999999999864
No 24
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=99.02 E-value=8e-10 Score=101.44 Aligned_cols=100 Identities=16% Similarity=0.084 Sum_probs=81.9
Q ss_pred ccchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--C----------chhHHHHHHH
Q psy3415 71 SDDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--E----------EMDSSSLSSG 125 (176)
Q Consensus 71 ~~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--~----------EDIH~aiE~~ 125 (176)
..++.+..+...+.+|++. +| .++.|+++ ++++.+.. |+ + -.+++.||++
T Consensus 60 ~~~~~~i~a~~~vk~AaA~an~~~G~l~~~~a~aI~~a-----~~ev~~g~~~~~fp~~~~q~gsGt~~Nmn~NevIa~r 134 (482)
T 3gtd_A 60 KMPKILIRALAILKKCAAQVNYEFGDLEYKIATSIDKA-----IDRILAGEFEDNFPLVVWQTGSGTQTNMNMNEVIASI 134 (482)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH-----HHHHHHTTTTTSCCCBSSSCTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHHcCCcccCCCeehhccCCCccccchHHHHHHHH
Confidence 3578999999999999999 45 46778888 77766533 54 1 1466779999
Q ss_pred HHHHhc-cccccc--cc------ccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415 126 GQLRCC-DTGRKL--HT------GRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK 175 (176)
Q Consensus 126 Lie~iG-~~gGkL--HT------GRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~ 175 (176)
+++++| +.|++. |+ ||||||++.|++|||+|+.+. .+...|..|+++|.+
T Consensus 135 a~e~~G~~~g~~~~vHpndhVn~gqSsND~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~ 194 (482)
T 3gtd_A 135 ANEELTGKKGGKFPVHPNDHVNKGQSSNDSFPTAMHIATVLATKQQLIPALNNLLTYLQD 194 (482)
T ss_dssp HHHHHHSCCCSSSSSCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHhCcccCCcCcCCccccCCCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 678874 76 999999999999999999986 699999999999864
No 25
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=98.96 E-value=6.8e-10 Score=101.70 Aligned_cols=117 Identities=11% Similarity=0.068 Sum_probs=80.4
Q ss_pred cccccCCCCCCCccccCCCcccchhhhhhhhhhhhhhHh------h-h---cccccccccchhhhhhhhhc-CCCCchhH
Q psy3415 51 IDELLGNEVPPPAAPVTPQSSDDEGDCYAGNKVNLDDVK------I-H---DSTPQTSTIHHNNIHKLESS-ALSEEMDS 119 (176)
Q Consensus 51 i~~Rl~g~~~~~v~~f~sSi~~D~~i~~~di~v~lAHvv------I-I---~A~~Il~al~~~~L~~l~~~-g~~~EDIH 119 (176)
+++|++. +.|..+-| |..-+...+.+.+||+. + | +++.|.+++.......+... ....+|||
T Consensus 39 l~~ry~~---~~m~~~fS----~~~~~~~~~~~e~Ala~a~~~~Gl~i~~e~~~~I~~~l~~i~~~~~~~~e~~~~hDV~ 111 (503)
T 2j91_A 39 LASRYAS---PEMCFVFS----DRYKFRTWRQLWLWLAEAEQTLGLPITDEQIREMKSNLENIDFKMAAEEEKRLRHDVM 111 (503)
T ss_dssp HHHTTSC---HHHHHHTS----HHHHHHHHHHHHHHHHHHHHHHTCSCCHHHHHHHHTTSSCCCHHHHHHHHHHHSCHHH
T ss_pred cccccCC---HHHHHHhC----hhHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCHHHHhhhhhhcCCcHH
Confidence 5667765 24554333 44466677788888887 4 5 34555554221111111000 01148999
Q ss_pred HHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3415 120 SSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175 (176)
Q Consensus 120 ~aiE~~Lie~iG~~gGkLHTGRSRNDqvAT~~RL~lRd~l~~l~~~L~~L~~aLl~ 175 (176)
..+|. |++++|+.||++|+|||+||.+.|...||+|+.+..+...|..|+++|.+
T Consensus 112 a~v~~-l~e~~g~~~~~iH~G~TS~Di~dta~~L~lr~al~~l~~~L~~L~~~L~~ 166 (503)
T 2j91_A 112 AHVHT-FGHCCPKAAGIIHLGATSCYVGDNTDLIILRNALDLLLPKLARVISRLAD 166 (503)
T ss_dssp HHHHH-HHHHCTTTGGGTTTTCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-HHHHhccccccccCCCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99995 89999999999999997777666666699999999999999999999864
No 26
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=98.22 E-value=3.8e-06 Score=77.12 Aligned_cols=99 Identities=10% Similarity=0.003 Sum_probs=73.8
Q ss_pred cchhhhhhhhhhhhhhHh------hh---cccccccccchhhhhhhhhcC----CC--C----------chhHHHHHHHH
Q psy3415 72 DDEGDCYAGNKVNLDDVK------IH---DSTPQTSTIHHNNIHKLESSA----LS--E----------EMDSSSLSSGG 126 (176)
Q Consensus 72 ~D~~i~~~di~v~lAHvv------II---~A~~Il~al~~~~L~~l~~~g----~~--~----------EDIH~aiE~~L 126 (176)
..+++..+...+.+|-+. +| .++.|.++ .+++.+.. |+ . --+.+.|-++.
T Consensus 72 ~~~~~i~a~~~vk~AaA~an~~lG~l~~~~a~aI~~A-----~~ei~~g~~~~~F~~d~~q~gsgt~~nmn~nevian~a 146 (495)
T 4hgv_A 72 QPLAIVRALGIVKQAAARANMALGRLDPAIGDAIVKA-----AQEVIDGKLDEHFPLVVWQTGSGTQSNMNANEVVSNRA 146 (495)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHH-----HHHHHTTSSGGGCCCBSSSCTTCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHH-----HHHHHcCchhhccchhhhhhccccccCcchhHHHHHHH
Confidence 346677777778887777 45 46778887 77776543 44 1 12445667788
Q ss_pred HHHhccccc---------ccccccchhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhc
Q psy3415 127 QLRCCDTGR---------KLHTGRSRNDMIVTDLRLYTRKHID-IIIELLLTMIKHLTK 175 (176)
Q Consensus 127 ie~iG~~gG---------kLHTGRSRNDqvAT~~RL~lRd~l~-~l~~~L~~L~~aLl~ 175 (176)
.+.+|...| .+|.|+|+||++.|++||++++++. .+...|..|+++|.+
T Consensus 147 ~e~lg~~~g~~~~vhpnd~Vh~gqSsnDv~~TA~~l~~~~~~~~~L~~~L~~L~~~L~~ 205 (495)
T 4hgv_A 147 IELLGGVMGSKKPVHPNDHVNMSQSSNDTYPTAMHIACAERVIHDLLPALKHLHKALEE 205 (495)
T ss_dssp HHHTTCCTTTTCSCCCCCCCTTTCCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHcCcccCCCCCCCHHHhccCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888885332 4899999999999999999999886 588999999998864
No 27
>2gpe_A Bifunctional protein PUTA; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 1.90A {Escherichia coli} PDB: 2rbf_A* 2jxg_A 2jxh_A 2jxi_A*
Probab=47.40 E-value=16 Score=22.53 Aligned_cols=20 Identities=15% Similarity=0.162 Sum_probs=16.9
Q ss_pred cccchhHHHHHHHHHHHHHH
Q psy3415 139 TGRSRNDMIVTDLRLYTRKH 158 (176)
Q Consensus 139 TGRSRNDqvAT~~RL~lRd~ 158 (176)
+||||++.+.-+++.|+.+.
T Consensus 25 ~~rs~s~lir~Ai~~yl~~~ 44 (52)
T 2gpe_A 25 IDRTPHWLIKQAIFSYLEQL 44 (52)
T ss_dssp TTCCHHHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHHHHHHHHHH
Confidence 46999999999999998653
No 28
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=38.38 E-value=19 Score=22.97 Aligned_cols=24 Identities=25% Similarity=0.234 Sum_probs=18.5
Q ss_pred hhhhhhhcCCCCchhHHHHHHHHHH
Q psy3415 104 NIHKLESSALSEEMDSSSLSSGGQL 128 (176)
Q Consensus 104 ~L~~l~~~g~~~EDIH~aiE~~Lie 128 (176)
+|..+.++||+||.+ .++|..|..
T Consensus 8 elqalkkegfspeel-aaleselqa 31 (48)
T 1g6u_A 8 ELQALKKEGFSPEEL-AALESELQA 31 (48)
T ss_dssp HHHHHHHTTCSHHHH-HHHHHHHHH
T ss_pred HHHHHHHcCCCHHHH-HHHHHHHHH
Confidence 378888999999887 677777654
No 29
>2ay0_A Bifunctional PUTA protein; ribbon-helix-helix, DNA-binding domain, proline catabo proline utilization A, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.43.1.11
Probab=21.25 E-value=70 Score=20.58 Aligned_cols=20 Identities=15% Similarity=0.204 Sum_probs=16.4
Q ss_pred ccccchhHHHHHHHHHHHHH
Q psy3415 138 HTGRSRNDMIVTDLRLYTRK 157 (176)
Q Consensus 138 HTGRSRNDqvAT~~RL~lRd 157 (176)
-+||||+..+..+++-|+-+
T Consensus 24 ~~~rs~s~lireAi~~yl~~ 43 (58)
T 2ay0_A 24 RIDRTPHWLIKQAIFSYLEQ 43 (58)
T ss_dssp HTTCCHHHHHHHHHHHHHHH
T ss_pred HHCcCHHHHHHHHHHHHHHH
Confidence 36799999998888888764
Done!