RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3415
(176 letters)
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 72.6 bits (179), Expect = 2e-15
Identities = 25/45 (55%), Positives = 31/45 (68%)
Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
R D G KLHTGRSRND + TDLRLY R + ++ELLL + + L
Sbjct: 73 RIGDVGGKLHTGRSRNDQVATDLRLYLRDALLELLELLLDLQRAL 117
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 71.7 bits (177), Expect = 3e-15
Identities = 28/42 (66%), Positives = 30/42 (71%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
D G KLHTGRSRND + TDLRLY R ID I ELLL + K L
Sbjct: 100 DVGGKLHTGRSRNDQVATDLRLYLRDEIDEIAELLLELQKAL 141
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 66.5 bits (163), Expect = 3e-13
Identities = 23/47 (48%), Positives = 30/47 (63%)
Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
R D G KLHTGRSRND + TDLRL+ R + ++EL+ + K L
Sbjct: 96 RIGDVGGKLHTGRSRNDQVATDLRLWLRDKLLELLELIRILQKALLD 142
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 66.2 bits (162), Expect = 3e-13
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
D G KLHTGRSRND + TDLRLY R H+ + E LL + L +
Sbjct: 96 DLGGKLHTGRSRNDQVATDLRLYLRDHVLELAEALLDLQDALIE 139
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 58.8 bits (143), Expect = 1e-10
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
D G+KLHTGRSRND + TDL+L+ + + ++ L + L
Sbjct: 98 DLGKKLHTGRSRNDQVATDLKLWCKDQVAELLTALRQLQSAL 139
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 55.6 bits (135), Expect = 1e-09
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
G +HTGRS ND++ T LRL R +DI++ L +I L
Sbjct: 69 LNGGYVHTGRSSNDIVDTALRLALRDALDILLPALKALIDALAA 112
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 52.0 bits (125), Expect = 3e-08
Identities = 18/39 (46%), Positives = 26/39 (66%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMI 170
+ +KLHT RSRND + TD RL+ R ID+I + + T+
Sbjct: 112 EPAKKLHTARSRNDQVATDTRLWCRDAIDVIRKRIKTLQ 150
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 48.2 bits (115), Expect = 4e-07
Identities = 18/35 (51%), Positives = 25/35 (71%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELL 166
D G+KLHTGRSRND + TDL+L+ R+ ++ L
Sbjct: 98 DLGKKLHTGRSRNDQVATDLKLWCRQQGQQLLLAL 132
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 39.5 bits (93), Expect = 3e-04
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 138 HTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
H GRS ND+ T LRL R +D ++ LL +I L
Sbjct: 38 HKGRSSNDIGTTALRLALRDALDDLLPLLKALIDAL 73
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 39.3 bits (92), Expect = 5e-04
Identities = 21/90 (23%), Positives = 36/90 (40%), Gaps = 16/90 (17%)
Query: 79 AGNKVNLDDVKIHDSTP----QTSTIHHNNIHKLESSALSEEMDSSSLSSGGQLRCCDTG 134
++ K D+ P Q + N++ E + E + GQL
Sbjct: 55 KALDEVAEEGKADDAFPLKVIQEGSGTAVNMNLNEV--IGELL--------GQLV--HPN 102
Query: 135 RKLHTGRSRNDMIVTDLRLYTRKHIDIIIE 164
K+HTG+S ND + T LRL + + ++
Sbjct: 103 DKVHTGQSSNDQVPTALRLALKLALSEVLL 132
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 34.6 bits (79), Expect = 0.021
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 131 CDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIE--LLL 167
D +H GRSRNDM VT R+ R+++ ++E LLL
Sbjct: 104 SDFVSNMHIGRSRNDMGVTMYRMSLRRYVLRLMEHHLLL 142
>gnl|CDD|226373 COG3855, Fbp, Uncharacterized protein conserved in bacteria
[Carbohydrate transport and metabolism].
Length = 648
Score = 32.8 bits (75), Expect = 0.083
Identities = 17/30 (56%), Positives = 22/30 (73%), Gaps = 3/30 (10%)
Query: 3 PTITTSAPEDPTEEVEEEEPLIDQLLASYR 32
PTI PE P E +EEEE +ID+LLAS++
Sbjct: 361 PTIN---PEQPYELLEEEEEVIDKLLASFQ 387
>gnl|CDD|148473 pfam06874, FBPase_2, Firmicute fructose-1,6-bisphosphatase. This
family consists of several bacterial
fructose-1,6-bisphosphatase proteins (EC:3.1.3.11) which
seem to be specific to phylum Firmicutes.
Fructose-1,6-bisphosphatase (FBPase) is a well known
enzyme involved in gluconeogenesis. This family does not
seem to be structurally related to pfam00316.
Length = 641
Score = 31.4 bits (72), Expect = 0.21
Identities = 15/31 (48%), Positives = 22/31 (70%), Gaps = 3/31 (9%)
Query: 3 PTITTSAPEDPTEEVEEEEPLIDQLLASYRT 33
PT+ P+DP E EEEE +ID+LL+S++
Sbjct: 355 PTVD---PKDPYELTEEEEEVIDKLLSSFQN 382
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 31.7 bits (72), Expect = 0.21
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTR 156
D G L T RSRND+ T +L+ R
Sbjct: 505 DVGGVLQTARSRNDINATTTKLHLR 529
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 29.1 bits (65), Expect = 1.1
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIK 171
RC D + SRN+ + DL L+ I I ++L +IK
Sbjct: 92 RCGDMFKNFRLFLSRNEQVHADLNLFIIDKIIEIEKILYEIIK 134
>gnl|CDD|206155 pfam13985, YbgS, YbgS-like protein. This family of proteins is
functionally uncharacterized. The family includes the
YbgS protein from E. coli. This family of proteins is
found in bacteria. Proteins in this family are
approximately 130 amino acids in length. Some members of
this family are annotated as homeobox protein, but this
annotation cannot be verified.
Length = 122
Score = 27.2 bits (60), Expect = 2.7
Identities = 17/62 (27%), Positives = 29/62 (46%), Gaps = 4/62 (6%)
Query: 84 NLDDVKIHDSTPQTSTIHHNNIHKLESSALSEEMDSSSLSSGGQLRCCDTGRKLHTGRSR 143
N+D+ KI +T T+ H N +E+ +++ G +C D +K+ TG
Sbjct: 55 NVDNSKI--NTGSGGTMQHPNGTMNSDGMSKDEVHKNTMCKDG--KCPDMNKKVQTGDGN 110
Query: 144 ND 145
ND
Sbjct: 111 ND 112
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 27.7 bits (62), Expect = 3.4
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 130 CCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
C G +H G + ND++ T L L R ++II+ L +I L
Sbjct: 84 CGAEGEFIHFGATSNDIVDTALALLLRDALEIILPKLKQLIDRLKD 129
>gnl|CDD|133393 cd04765, HTH_MlrA-like_sg2, Helix-Turn-Helix DNA binding domain of
putative MlrA-like transcription regulators. Putative
helix-turn-helix (HTH) MlrA-like transcription
regulators (subgroup 2), N-terminal domain. The MlrA
protein, also known as YehV, has been shown to control
cell-cell aggregation by co-regulating the expression of
curli and extracellular matrix production in Escherichia
coli and Salmonella typhimurium. These proteins belong
to the MerR superfamily of transcription regulators that
promote expression of several stress regulon genes by
reconfiguring the spacer between the -35 and -10
promoter elements. Their conserved N-terminal domains
contain predicted HTH motifs that mediate DNA binding,
while the dissimilar C-terminal domains bind specific
coactivator molecules.
Length = 99
Score = 25.7 bits (57), Expect = 8.2
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 5/24 (20%)
Query: 152 RLYTRKHIDIIIELLLTMIKHLTK 175
R Y K +++++ IKHL
Sbjct: 37 RYYRPKDVELLLL-----IKHLLY 55
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 26.2 bits (58), Expect = 8.8
Identities = 16/63 (25%), Positives = 22/63 (34%), Gaps = 1/63 (1%)
Query: 9 APEDPTEEVEEEEPLIDQLLASYRTQSPVSRDQYNFIGRHKNIDELLGNEVPPPAAPVTP 68
P D E+ EE+P + + +YNF R E+ GN V P
Sbjct: 14 FPLDDEEDYYEEDPR-QEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNVVNMPRVAAQD 72
Query: 69 QSS 71
S
Sbjct: 73 SSK 75
>gnl|CDD|235372 PRK05248, PRK05248, hypothetical protein; Provisional.
Length = 121
Score = 25.6 bits (57), Expect = 9.0
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 1/33 (3%)
Query: 15 EEVEEEEPLIDQLLASYRTQSPVSRDQYNFIGR 47
EEV + +D++LA+ S ++ G
Sbjct: 30 EEVGKNLAKLDEVLAAAAAVKG-SEREWQLAGH 61
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.130 0.371
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 8,840,059
Number of extensions: 777243
Number of successful extensions: 575
Number of sequences better than 10.0: 1
Number of HSP's gapped: 574
Number of HSP's successfully gapped: 28
Length of query: 176
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 86
Effective length of database: 6,945,742
Effective search space: 597333812
Effective search space used: 597333812
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 56 (25.4 bits)