RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3415
(176 letters)
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 69.1 bits (170), Expect = 2e-14
Identities = 23/44 (52%), Positives = 30/44 (68%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
D KLHTGRSRND +VTDL+L+ + + II LL +IK L +
Sbjct: 104 DIAGKLHTGRSRNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVE 147
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 68.7 bits (169), Expect = 3e-14
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
G+KLHTGRSRND + TDL+L+ + + ++ + L +
Sbjct: 98 QLGKKLHTGRSRNDQVATDLKLWCKDTVSELLTANRQLQSALVE 141
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 68.8 bits (169), Expect = 3e-14
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHLTK 175
G KLHT RSRND + TDLRLY R ID ++ LLL + + L +
Sbjct: 99 PPGGKLHTARSRNDQVATDLRLYLRGAIDELLALLLALRRVLVR 142
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 41.0 bits (95), Expect = 1e-04
Identities = 33/184 (17%), Positives = 50/184 (27%), Gaps = 82/184 (44%)
Query: 12 DPTEEVEEEEPLIDQLLASYRTQ--------SPVSRDQY--NFIGRH-KNIDELLGNEVP 60
+ ++E E L ++ Y P DQY + IG H KNI+
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEH------- 486
Query: 61 PPAAPVTPQSSDDEGDCYAGNKVNLD----DVKI-HDSTPQTSTIHHNNIHKLESSALSE 115
+ + V LD + KI HDST
Sbjct: 487 -----------PERMTLF--RMVFLDFRFLEQKIRHDSTA-------------------- 513
Query: 116 EMDSSSLSSGGQLRCCDTGRKLHTGRSRNDMIVTDLRLYTRKHI---DIIIELLLTMIKH 172
+G L+T + L+ Y + +I D E L+ I
Sbjct: 514 --------------WNASGSILNT--------LQQLKFY-KPYICDNDPKYERLVNAILD 550
Query: 173 LTKN 176
Sbjct: 551 FLPK 554
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.7 bits (87), Expect = 0.001
Identities = 36/202 (17%), Positives = 58/202 (28%), Gaps = 72/202 (35%)
Query: 1 QPPTITTSAPEDPTEEVEEEEPLIDQLLASY-----RTQSPVSRDQYNFIGRHKNIDE-- 53
PT +A ++PT E L+ + P Q++ + + E
Sbjct: 42 PEPTEGFAADDEPTTPAE--------LVGKFLGYVSSLVEPSKVGQFDQVLNLC-LTEFE 92
Query: 54 ---LLGNEVPPPAAPVTPQSSDDEGD------CYAGNKVNLDDVKIHDSTPQTSTIHHNN 104
L GN++ AA + ++ Y +I P
Sbjct: 93 NCYLEGNDIHALAAKLLQENDTTLVKTKELIKNYI-------TARIMAKRP--------- 136
Query: 105 IHKLESSALSEEMDSSSLSS----GGQLRCCDTG---------RKLH-TGRSRNDMIVTD 150
K +SAL + + GGQ G R L+ T +V D
Sbjct: 137 FDKKSNSALFRAVGEGNAQLVAIFGGQ------GNTDDYFEELRDLYQTYHV----LVGD 186
Query: 151 LRLYTRKHIDIIIELLLTMIKH 172
L I E L +I+
Sbjct: 187 L-------IKFSAETLSELIRT 201
Score = 27.7 bits (61), Expect = 2.7
Identities = 30/212 (14%), Positives = 66/212 (31%), Gaps = 89/212 (41%)
Query: 2 PPTITTSAPEDPTEEVEEEEPLIDQLLASYRTQSP------VSRDQYNFIGRHKNIDELL 55
PP+I + E E P SP ++++Q + + +++
Sbjct: 320 PPSILEDS-----LENNEGVP------------SPMLSISNLTQEQ---VQDY--VNKT- 356
Query: 56 GNEVPPPA---------AP----VT--PQSSDDEGDCYAGNKVNLDDVKIHDSTPQTSTI 100
N P V+ PQS G + L K Q+
Sbjct: 357 -NSHLPAGKQVEISLVNGAKNLVVSGPPQS-------LYGLNLTLRKAKAPSGLDQSRIP 408
Query: 101 H------------------HNNIHKLESSA--LSEEMDSSSLS-SGGQLRC--CDTGRKL 137
H+ H L ++ +++++ +++S + ++ DT
Sbjct: 409 FSERKLKFSNRFLPVASPFHS--HLLVPASDLINKDLVKNNVSFNAKDIQIPVYDT---- 462
Query: 138 HTGRSRNDMIVTDLRLYTRKHIDIIIELLLTM 169
G DLR+ + + I++ ++ +
Sbjct: 463 FDGS--------DLRVLSGSISERIVDCIIRL 486
Score = 26.2 bits (57), Expect = 7.2
Identities = 19/114 (16%), Positives = 33/114 (28%), Gaps = 39/114 (34%)
Query: 73 DEGDCYAGNKVNLDDVKIHDSTPQTSTIHHNNIHKLESSALSEEMDSSSLSSGGQLRCCD 132
+ D + + + I + P TIH GG+
Sbjct: 1647 NRADNHFKDTYGFSILDIVINNPVNLTIHF----------------------GGE----- 1679
Query: 133 TGRKLHTGRSRNDMI---VTDLRLYTRKHIDIIIELLLT-MIKH------LTKN 176
G+++ S MI + D +L T K I E + + T+
Sbjct: 1680 KGKRIRENYSA--MIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQF 1731
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 4.6
Identities = 7/23 (30%), Positives = 14/23 (60%), Gaps = 3/23 (13%)
Query: 103 NNIHKLESS-ALSEEMDSS-SLS 123
+ KL++S L + DS+ +L+
Sbjct: 20 QALKKLQASLKLYAD-DSAPALA 41
>4dur_A Plasminogen, serine protease; fibrinolysis, hydrolase; HET: NAG GAL
SIA; 2.45A {Homo sapiens} PDB: 4a5t_S* 4duu_A 2feb_A
Length = 791
Score = 26.6 bits (58), Expect = 6.1
Identities = 12/50 (24%), Positives = 17/50 (34%), Gaps = 2/50 (4%)
Query: 32 RTQSPVSRDQYNFIGRHKNIDELLGNEVPPPAAPVTPQSSDDEGDCYAGN 81
T P R +Y + + PPP + + E DC GN
Sbjct: 419 FTTDPSVRWEYCNLKKCS--GTEASVVAPPPVVLLPDVETPSEEDCMFGN 466
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 26.3 bits (57), Expect = 6.3
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 152 RLYTRKHIDIIIELLLTMIKH 172
R+YT H+D I + L+ + +
Sbjct: 420 RVYTNDHMDYIADALIGLKEK 440
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.311 0.130 0.371
Gapped
Lambda K H
0.267 0.0540 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,617,030
Number of extensions: 142975
Number of successful extensions: 188
Number of sequences better than 10.0: 1
Number of HSP's gapped: 188
Number of HSP's successfully gapped: 16
Length of query: 176
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 89
Effective length of database: 4,272,666
Effective search space: 380267274
Effective search space used: 380267274
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.0 bits)