RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3415
         (176 letters)



>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
           (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
          Length = 448

 Score = 31.2 bits (69), Expect = 0.067
 Identities = 12/42 (28%), Positives = 19/42 (45%)

Query: 132 DTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
           +  R +H G +  D + T L L  R  +D+I   L  +   L
Sbjct: 93  EAERYVHLGATSQDAMDTGLVLQLRDALDLIEADLGKLADTL 134


>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
           [Bacillus sp. NRRL B-14911]   gi|89084274|gb|EAR63432.1|
           adenylosuccinate lyase [Bacillus sp. NRRL B-14911]  E=0
           s/c=1.85 id=87% cov=100%
          Length = 408

 Score = 30.2 bits (67), Expect = 0.10
 Identities = 6/37 (16%), Positives = 17/37 (45%)

Query: 129 RCCDTGRKLHTGRSRNDMIVTDLRLYTRKHIDIIIEL 165
              +  + +H G +  D++ T L    ++   I+++ 
Sbjct: 72  TLGEERKWVHYGLTSTDVVDTALSYLIKQANSILLQD 108


>d2c7pa1 c.66.1.26 (A:1-327) DNA methylase HhaI {Haemophilus
           haemolyticus [TaxId: 726]}
          Length = 327

 Score = 26.1 bits (56), Expect = 2.5
 Identities = 5/25 (20%), Positives = 6/25 (24%)

Query: 40  DQYNFIGRHKNIDELLGNEVPPPAA 64
           D Y          +  GN V     
Sbjct: 287 DSYKVHPSTSQAYKQFGNSVVINVL 311


>d1y0ua_ a.4.5.5 (A:) Putative arsenical resistance operon
          repressor AF0168 {Archaeoglobus fulgidus [TaxId: 2234]}
          Length = 89

 Score = 24.6 bits (53), Expect = 3.1
 Identities = 6/36 (16%), Positives = 16/36 (44%)

Query: 20 EEPLIDQLLASYRTQSPVSRDQYNFIGRHKNIDELL 55
          E+        +Y   +PV R     + + ++ +E++
Sbjct: 15 EKADEYHKRYNYAVTNPVRRKILRMLDKGRSEEEIM 50


>d3b77a1 b.55.1.13 (A:14-203) Uncharacterized protein Exig2160
           {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
          Length = 190

 Score = 24.8 bits (54), Expect = 5.6
 Identities = 8/45 (17%), Positives = 17/45 (37%), Gaps = 1/45 (2%)

Query: 81  NKVNLDDVK-IHDSTPQTSTIHHNNIHKLESSALSEEMDSSSLSS 124
           +K  L+ VK ++ +    +   +     LE +  S     + L  
Sbjct: 102 DKKQLEHVKDLYKALLAIAEKQYEGQKMLEFANSSLNHSVTILGG 146


>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
           {Proteus vulgaris [TaxId: 585]}
          Length = 465

 Score = 24.9 bits (53), Expect = 5.9
 Identities = 17/94 (18%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 80  GNKVNLDDVKIHDSTPQTSTIHHNNIHKLESSALSEEMDSSSLSSGGQLRCCDTGRKLHT 139
           G+ V +D  K+    P         I+ L   +    ++  S   G +       +    
Sbjct: 351 GHAVFVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLG-RDPATGEQKHADM 409

Query: 140 GRSRNDMIVTDLRLYTRKHIDIIIELLLTMIKHL 173
              R   +    R+YT  H+D I + L+ + +  
Sbjct: 410 EFMR---LTIARRVYTNDHMDYIADALIGLKEKF 440


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.130    0.371 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 634,301
Number of extensions: 27032
Number of successful extensions: 42
Number of sequences better than 10.0: 1
Number of HSP's gapped: 42
Number of HSP's successfully gapped: 7
Length of query: 176
Length of database: 2,407,596
Length adjustment: 79
Effective length of query: 97
Effective length of database: 1,322,926
Effective search space: 128323822
Effective search space used: 128323822
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 50 (23.3 bits)