BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3416
(455 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2E9F|A Chain A, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|C Chain C, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|D Chain D, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
pdb|2E9F|B Chain B, Crystal Structure Of T.th.hb8 Argininosuccinate Lyase
Complexed With L-arginine
Length = 462
Score = 238 bits (606), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 105/249 (42%), Positives = 162/249 (65%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
AALAGT I+R+ TA+ L F+ P NSLD+++ RDF +E +S + ++HLSR++EE I
Sbjct: 201 AALAGTGFPIDRHFTARELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELI 260
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
++ +F F+ +P++F TGSSIMPQKKNPD+LELIR K GR+ + + +K LAY
Sbjct: 261 LYSTEEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVVKGLPLAY 320
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
NKDLQEDK PL D + L L+ + + M+ A G++++T++ADYL +K
Sbjct: 321 NKDLQEDKEPLLDALATYRDSLRLLAALLPGLKWRRERMWRAAEGGYTLATELADYLAEK 380
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
G+PFR +H +VG +++ E+ + KDL+L EL+ H ++D + +L +E +I +
Sbjct: 381 GLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFAEDALPLLRLETAIHRRRSY 440
Query: 424 GGTSPEQVK 432
GGT+PE V+
Sbjct: 441 GGTAPEAVR 449
Score = 181 bits (458), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 87/181 (48%), Positives = 127/181 (70%), Gaps = 2/181 (1%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKT--IMPGFTHFQIAQPISLGHYLL 59
+ TDLRLY R ID ++ LLL + + L ++KH ++PG+TH Q AQP+ L H+ L
Sbjct: 114 VATDLRLYLRGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFL 173
Query: 60 AYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSIS 119
AY M +RD RL D ++R+N SPLG+AALAGT I+R+ TA+ L F+ P NSLD+++
Sbjct: 174 AYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVA 233
Query: 120 DRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKD 179
RDF +E +S + ++HLSR++EE I++ +F F+ +P++F TGSSIMPQKKNPD+ +
Sbjct: 234 SRDFALEVLSALNIGMLHLSRMAEELILYSTEEFGFVEVPDAFATGSSIMPQKKNPDILE 293
Query: 180 L 180
L
Sbjct: 294 L 294
>pdb|1TJ7|A Chain A, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
pdb|1TJ7|B Chain B, Structure Determination And Refinement At 2.44 A
Resolution Of Argininosuccinate Lyase From E. Coli
Length = 457
Score = 220 bits (560), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 106/248 (42%), Positives = 153/248 (61%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
ALAGT + I+R A L F + NSLDS+SDRD V+E +S + ++HLSR +E+ I
Sbjct: 198 GALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLI 257
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
F + F+ L + +GSS+MPQKKNPD LELIRGK GR+ L ++ T+K LAY
Sbjct: 258 FFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAY 317
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
NKD+QEDK LFD +D + CL + +++ E A +G++ +T++ADYLV K
Sbjct: 318 NKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAK 377
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
GVPFR +H IVG + + K +DL L+EL+ F I +D+ IL +++ + +
Sbjct: 378 GVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAK 437
Query: 424 GGTSPEQV 431
GG SP+QV
Sbjct: 438 GGVSPQQV 445
Score = 164 bits (415), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 84/249 (33%), Positives = 138/249 (55%), Gaps = 7/249 (2%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+ TDL+L+ + + ++ + L + + + +MPG+TH Q AQP++ H+ LAY
Sbjct: 113 VATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAY 172
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
M RD +RL D KR+++SPLG ALAGT + I+R A L F + NSLDS+SDR
Sbjct: 173 VEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDR 232
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLR 181
D V+E +S + ++HLSR +E+ I F + F+ L + +GSS+MPQKKNPD +L
Sbjct: 233 DHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALEL- 291
Query: 182 QRAALAGTTHHINRYLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240
+ G + LT ++ + P + D D++ + + + T L +H++ +
Sbjct: 292 ----IRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDT-WLDCLHMAALVL 346
Query: 241 EFIIFMNPQ 249
+ I P+
Sbjct: 347 DGIQVKRPR 355
>pdb|1XWO|A Chain A, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|B Chain B, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|C Chain C, Crystal Structrue Of Goose Delta Crystallin
pdb|1XWO|D Chain D, Crystal Structrue Of Goose Delta Crystallin
Length = 465
Score = 207 bits (528), Expect = 7e-54, Method: Compositional matrix adjust.
Identities = 107/261 (40%), Positives = 158/261 (60%), Gaps = 1/261 (0%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
ALAG I+R + LDF S NS+D+IS+RDFV+EF+S L+++HLS+++E+ I
Sbjct: 201 GALAGNPLDIDREMLRSELDFASISLNSMDAISERDFVVEFLSVATLLMIHLSKMAEDLI 260
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
I+ +F FLTL ++F TGSS+MPQKKNPD LELIR K GR++ L +IL +K Y
Sbjct: 261 IYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTY 320
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
NKDLQEDK +FD VD + L + +I +++ M E A+ +STD+A YLV+K
Sbjct: 321 NKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENM-EKALTPEMLSTDLALYLVRK 379
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
G+PFR +H G + K T +L+L +LK+ S D+ + NS++ +
Sbjct: 380 GMPFRQAHTASGKAVHLAETKGITINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTAM 439
Query: 424 GGTSPEQVKITVQGFRFYIQK 444
GGT+ V ++ R ++K
Sbjct: 440 GGTAKSSVTTQIEHLRELMKK 460
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 124/185 (67%), Gaps = 1/185 (0%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+VTDL+L+ + + +I LL +IK L + + I+PG+TH Q AQPI +LL++
Sbjct: 116 VVTDLKLFMKNSLSVISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSH 175
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A RD RL + ++R+N+ PLGS ALAG I+R + LDF S NS+D+IS+R
Sbjct: 176 AVALTRDSERLGEVKRRINVLPLGSGALAGNPLDIDREMLRSELDFASISLNSMDAISER 235
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL- 180
DFV+EF+S L+++HLS+++E+ II+ +F FLTL ++F TGSS+MPQKKNPD +L
Sbjct: 236 DFVVEFLSVATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELI 295
Query: 181 RQRAA 185
R +A
Sbjct: 296 RSKAG 300
>pdb|1K7W|A Chain A, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|B Chain B, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|C Chain C, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
pdb|1K7W|D Chain D, Crystal Structure Of S283a Duck Delta 2 Crystallin Mutant
Length = 468
Score = 204 bits (519), Expect = 7e-53, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 157/261 (60%), Gaps = 1/261 (0%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
ALAG I+R + L+F S NS+D+IS+RDFV+EF+S L+++HLS+++E+ I
Sbjct: 204 GALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLI 263
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
I+ +F FLTL ++F TG+S+MPQKKNPD LELIR K GR++ L +IL +K Y
Sbjct: 264 IYSTSEFGFLTLSDAFSTGASLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTY 323
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
NKDLQEDK +FD VD + L + +I +++ M E A+ ++TD+A YLV+K
Sbjct: 324 NKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENM-EKALTPEMLATDLALYLVRK 382
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
GVPFR +H G + K T LSL +LK+ S D+ + NS++ +
Sbjct: 383 GVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTAL 442
Query: 424 GGTSPEQVKITVQGFRFYIQK 444
GGT+ V ++ R ++K
Sbjct: 443 GGTAKSSVTTQIEQLRELMKK 463
Score = 173 bits (438), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 124/185 (67%), Gaps = 1/185 (0%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+VTDL+L+ + + II LL +IK L + + I+PG+TH Q AQPI +LL++
Sbjct: 119 VVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSH 178
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A RD RL + +KR+N+ PLGS ALAG I+R + L+F S NS+D+IS+R
Sbjct: 179 AVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISER 238
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL- 180
DFV+EF+S L+++HLS+++E+ II+ +F FLTL ++F TG+S+MPQKKNPD +L
Sbjct: 239 DFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGASLMPQKKNPDSLELI 298
Query: 181 RQRAA 185
R +A
Sbjct: 299 RSKAG 303
>pdb|1DCN|A Chain A, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|B Chain B, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|C Chain C, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
pdb|1DCN|D Chain D, Inactive Mutant H162n Of Delta 2 Crystallin With Bound
Argininosuccinate
Length = 447
Score = 204 bits (519), Expect = 8e-53, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 158/261 (60%), Gaps = 1/261 (0%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
ALAG I+R + L+F S NS+D+IS+RDFV+EF+S L+++HLS+++E+ I
Sbjct: 186 GALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLI 245
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
I+ +F FLTL ++F TGSS+MPQKKNPD LELIR K+GR++ L +IL +K Y
Sbjct: 246 IYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKSGRVFGRLASILMVLKGLPSTY 305
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
NKDLQEDK +FD VD + L + +I +++ M E A+ ++TD+A YLV+K
Sbjct: 306 NKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENM-EKALTPEMLATDLALYLVRK 364
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
GVPFR +H G + K T +LSL +LK+ S D+ + NS++ +
Sbjct: 365 GVPFRQAHTASGKAVHLAETKGITINNLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTAL 424
Query: 424 GGTSPEQVKITVQGFRFYIQK 444
GT+ V ++ R ++K
Sbjct: 425 AGTAKSSVTTQIEQLRELMKK 445
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 82/179 (45%), Positives = 121/179 (67%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+VTDL+L+ + + II LL +IK L + + I+PG+T+ Q AQPI +LL++
Sbjct: 101 VVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTNLQKAQPIRWSQFLLSH 160
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A RD RL + +KR+N+ PLGS ALAG I+R + L+F S NS+D+IS+R
Sbjct: 161 AVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISER 220
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL 180
DFV+EF+S L+++HLS+++E+ II+ +F FLTL ++F TGSS+MPQKKNPD +L
Sbjct: 221 DFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLEL 279
>pdb|1HY1|A Chain A, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|B Chain B, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|C Chain C, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
pdb|1HY1|D Chain D, Crystal Structure Of Wild Type Duck Delta 2 Crystallin
(Eye Lens Protein)
Length = 468
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 156/261 (59%), Gaps = 1/261 (0%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
ALAG I+R + L+F S NS+D+IS+RDFV+EF+S L+++HLS+++E+ I
Sbjct: 204 GALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLI 263
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
I+ +F FLTL ++F TGSS+MPQKKNPD LELIR K GR++ L +IL +K Y
Sbjct: 264 IYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTY 323
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
NKDLQEDK +FD VD + L + +I +++ M E A+ ++TD+A YLV+K
Sbjct: 324 NKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENM-EKALTPEMLATDLALYLVRK 382
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
GVPFR +H G + K T LSL +LK+ S D+ + NS++ +
Sbjct: 383 GVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTAL 442
Query: 424 GGTSPEQVKITVQGFRFYIQK 444
GT+ V ++ R ++K
Sbjct: 443 AGTAKSSVTTQIEQLRELMKK 463
Score = 174 bits (441), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 85/185 (45%), Positives = 124/185 (67%), Gaps = 1/185 (0%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+VTDL+L+ + + II LL +IK L + + I+PG+TH Q AQPI +LL++
Sbjct: 119 VVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSH 178
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A RD RL + +KR+N+ PLGS ALAG I+R + L+F S NS+D+IS+R
Sbjct: 179 AVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISER 238
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL- 180
DFV+EF+S L+++HLS+++E+ II+ +F FLTL ++F TGSS+MPQKKNPD +L
Sbjct: 239 DFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELI 298
Query: 181 RQRAA 185
R +A
Sbjct: 299 RSKAG 303
>pdb|1TJU|A Chain A, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|B Chain B, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|C Chain C, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
pdb|1TJU|D Chain D, Crystal Structure Of T161s Duck Delta 2 Crystallin Mutant
Length = 474
Score = 203 bits (516), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 156/261 (59%), Gaps = 1/261 (0%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
ALAG I+R + L+F S NS+D+IS+RDFV+EF+S L+++HLS+++E+ I
Sbjct: 204 GALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLI 263
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
I+ +F FLTL ++F TGSS+MPQKKNPD LELIR K GR++ L +IL +K Y
Sbjct: 264 IYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTY 323
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
NKDLQEDK +FD VD + L + +I +++ M E A+ ++TD+A YLV+K
Sbjct: 324 NKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENM-EKALTPEMLATDLALYLVRK 382
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
GVPFR +H G + K T LSL +LK+ S D+ + NS++ +
Sbjct: 383 GVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTAL 442
Query: 424 GGTSPEQVKITVQGFRFYIQK 444
GT+ V ++ R ++K
Sbjct: 443 AGTAKSSVTTQIEQLRELMKK 463
Score = 172 bits (437), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 124/185 (67%), Gaps = 1/185 (0%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+VTDL+L+ + + II LL +IK L + + I+PG++H Q AQPI +LL++
Sbjct: 119 VVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYSHLQKAQPIRWSQFLLSH 178
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A RD RL + +KR+N+ PLGS ALAG I+R + L+F S NS+D+IS+R
Sbjct: 179 AVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISER 238
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL- 180
DFV+EF+S L+++HLS+++E+ II+ +F FLTL ++F TGSS+MPQKKNPD +L
Sbjct: 239 DFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELI 298
Query: 181 RQRAA 185
R +A
Sbjct: 299 RSKAG 303
>pdb|1TJV|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJV|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
pdb|1TJW|A Chain A, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|B Chain B, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|C Chain C, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
pdb|1TJW|D Chain D, Crystal Structure Of T161d Duck Delta 2 Crystallin Mutant
With Bound Argininosuccinate
Length = 474
Score = 202 bits (515), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 156/261 (59%), Gaps = 1/261 (0%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
ALAG I+R + L+F S NS+D+IS+RDFV+EF+S L+++HLS+++E+ I
Sbjct: 204 GALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLI 263
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
I+ +F FLTL ++F TGSS+MPQKKNPD LELIR K GR++ L +IL +K Y
Sbjct: 264 IYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTY 323
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
NKDLQEDK +FD VD + L + +I +++ M E A+ ++TD+A YLV+K
Sbjct: 324 NKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENM-EKALTPEMLATDLALYLVRK 382
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
GVPFR +H G + K T LSL +LK+ S D+ + NS++ +
Sbjct: 383 GVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTAL 442
Query: 424 GGTSPEQVKITVQGFRFYIQK 444
GT+ V ++ R ++K
Sbjct: 443 AGTAKSSVTTQIEQLRELMKK 463
Score = 171 bits (434), Expect = 6e-43, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 123/185 (66%), Gaps = 1/185 (0%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+VTDL+L+ + + II LL +IK L + + I+PG+ H Q AQPI +LL++
Sbjct: 119 VVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYDHLQKAQPIRWSQFLLSH 178
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A RD RL + +KR+N+ PLGS ALAG I+R + L+F S NS+D+IS+R
Sbjct: 179 AVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISER 238
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL- 180
DFV+EF+S L+++HLS+++E+ II+ +F FLTL ++F TGSS+MPQKKNPD +L
Sbjct: 239 DFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELI 298
Query: 181 RQRAA 185
R +A
Sbjct: 299 RSKAG 303
>pdb|1AUW|A Chain A, H91n Delta 2 Crystallin From Duck
pdb|1AUW|B Chain B, H91n Delta 2 Crystallin From Duck
pdb|1AUW|C Chain C, H91n Delta 2 Crystallin From Duck
pdb|1AUW|D Chain D, H91n Delta 2 Crystallin From Duck
Length = 468
Score = 202 bits (513), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 106/261 (40%), Positives = 156/261 (59%), Gaps = 1/261 (0%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
ALAG I+R + L+F S NS+D+IS+RDFV+EF+S L+++HLS+++E+ I
Sbjct: 204 GALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLI 263
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
I+ +F FLT ++F TGSS+MPQKKNPD LELIR K GR++ L +IL +K Y
Sbjct: 264 IYSTSEFGFLTDSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTY 323
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
NKDLQEDK +FD VD + L + +I +++ M E A+ ++TD+A YLV+K
Sbjct: 324 NKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENM-EKALTPEMLATDLALYLVRK 382
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
GVPFR +H G + K T LSL +LK+ S D+ + NS++ +
Sbjct: 383 GVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQYTAL 442
Query: 424 GGTSPEQVKITVQGFRFYIQK 444
GGT+ V ++ R ++K
Sbjct: 443 GGTAKSSVTTQIEQLRELMKK 463
Score = 171 bits (432), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 84/185 (45%), Positives = 123/185 (66%), Gaps = 1/185 (0%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+VTDL+L+ + + II LL +IK L + + I+PG+TH Q AQPI +LL++
Sbjct: 119 VVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSH 178
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A RD RL + +KR+N+ PLGS ALAG I+R + L+F S NS+D+IS+R
Sbjct: 179 AVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISER 238
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL- 180
DFV+EF+S L+++HLS+++E+ II+ +F FLT ++F TGSS+MPQKKNPD +L
Sbjct: 239 DFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTDSDAFSTGSSLMPQKKNPDSLELI 298
Query: 181 RQRAA 185
R +A
Sbjct: 299 RSKAG 303
>pdb|1HY0|A Chain A, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
pdb|1HY0|B Chain B, Crystal Structure Of Wild Type Duck Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 201 bits (511), Expect = 6e-52, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 157/261 (60%), Gaps = 1/261 (0%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
ALAG I+R + L+F S NS+D+IS+RDFV+EF+S L+++HLS+++E+ I
Sbjct: 202 GALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLI 261
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
I+ +F FLTL ++F TGSS+MPQKKNPD LELIR K+GR++ L +IL +K Y
Sbjct: 262 IYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKSGRVFGRLASILMVLKGLPSTY 321
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
NKDLQEDK + D VD + L + +I +++ M E A+ ++TD+A YLV+K
Sbjct: 322 NKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENM-EKALTPEMLATDLALYLVRK 380
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
G+PFR +H G + K +L+L +LK+ S D+ + NS++ +
Sbjct: 381 GMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTAL 440
Query: 424 GGTSPEQVKITVQGFRFYIQK 444
GGT+ V ++ R ++K
Sbjct: 441 GGTAKSSVTTQIEQLRELMKK 461
Score = 176 bits (445), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 143/232 (61%), Gaps = 6/232 (2%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+VTDL+L+ + + II LL +IK L + + I+PG+TH Q AQPI +LL++
Sbjct: 117 VVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSH 176
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A RD RL + +KR+N+ PLGS ALAG I+R + L+F S NS+D+IS+R
Sbjct: 177 AVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISER 236
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLR 181
DFV+EF+S L+++HLS+++E+ II+ +F FLTL ++F TGSS+MPQKKNPD +L
Sbjct: 237 DFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLEL- 295
Query: 182 QRAALAGTTHHINRYLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIV 232
+ + + L + L+ + PS + D D++ VI+ + T ++
Sbjct: 296 ----IRSKSGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVL 343
>pdb|1U15|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|B Chain B, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|C Chain C, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U15|D Chain D, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm)
pdb|1U16|A Chain A, Crystal Structure Of A Duck-Delta-Crystallin-1 Double Loop
Mutant (Dlm) In Complex With Sulfate
Length = 472
Score = 201 bits (510), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 103/261 (39%), Positives = 156/261 (59%), Gaps = 1/261 (0%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
ALAG I+R + L+F S NS+D+IS+RDFV+EF+S L+++HLS+++E+ I
Sbjct: 202 GALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSVATLLLIHLSKMAEDLI 261
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
I+ +F FLTL ++F TGSS+MPQKKNPD LELIR K GR++ L +IL +K Y
Sbjct: 262 IYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTY 321
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
NKDLQEDK + D VD + L + +I +++ M E A+ ++TD+A YLV+K
Sbjct: 322 NKDLQEDKEAVIDVVDTLTAVLQVATGVISTLQISKENM-EKALTPEMLATDLALYLVRK 380
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
G+PFR +H G + K +L+L +LK+ S D+ + NS++ +
Sbjct: 381 GMPFRQAHTASGKAVHLAETKGIAINNLTLEDLKSISPLFSSDVSQVFNFVNSVEQYTAL 440
Query: 424 GGTSPEQVKITVQGFRFYIQK 444
GGT+ V ++ R ++K
Sbjct: 441 GGTAKSSVTTQIEQLRELMKK 461
Score = 176 bits (447), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 94/233 (40%), Positives = 144/233 (61%), Gaps = 8/233 (3%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+VTDL+L+ + + II LL +IK L + + I+PG+TH Q AQPI +LL++
Sbjct: 117 VVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSH 176
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A RD RL + +KR+N+ PLGS ALAG I+R + L+F S NS+D+IS+R
Sbjct: 177 AVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISER 236
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL- 180
DFV+EF+S L+++HLS+++E+ II+ +F FLTL ++F TGSS+MPQKKNPD +L
Sbjct: 237 DFVVEFLSVATLLLIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELI 296
Query: 181 RQRAALAGTTHHINRYLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIV 232
R +A + L + L+ + PS + D D++ VI+ + T ++
Sbjct: 297 RSKAG------RVFGRLASILMVLKGLPSTYNKDLQEDKEAVIDVVDTLTAVL 343
>pdb|1I0A|A Chain A, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|B Chain B, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|C Chain C, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
pdb|1I0A|D Chain D, Crystal Structure Of Wild Type Turkey Delta 1 Crystallin
(Eye Lens Protein)
Length = 466
Score = 191 bits (486), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 98/261 (37%), Positives = 152/261 (58%), Gaps = 1/261 (0%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
LAG I+R L LD + NS+D+IS+RDFV+E IS L+++HLS+++E+ I
Sbjct: 202 GVLAGNPLEIDRELLRSELDMTSITLNSIDAISERDFVVELISVATLLMIHLSKLAEDLI 261
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
IF +F F+TL +++ TGSS++PQKKNPD LELIR K GR++ L IL +K +
Sbjct: 262 IFSTTEFGFVTLSDAYSTGSSLLPQKKNPDSLELIRSKAGRVFGRLAAILMVLKGIPSTF 321
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
+KDLQEDK + D VD + L + +I N++ M E A+ +STD+A YLV+K
Sbjct: 322 SKDLQEDKEAVLDVVDTLTAVLQVATGVISTLQINKENM-EKALTPELLSTDLALYLVRK 380
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
G+P R + G + K T +L+L +LK+ + D+ + + NS++ +
Sbjct: 381 GMPIRQAQTASGKAVHLAETKGITINNLTLEDLKSISPLFASDVSQVFSVVNSVEQYTAV 440
Query: 424 GGTSPEQVKITVQGFRFYIQK 444
GGT+ V ++ R ++K
Sbjct: 441 GGTAKSSVTAQIEQLRELLKK 461
Score = 166 bits (420), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 138/233 (59%), Gaps = 8/233 (3%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+VTDL+L + I +I LL +IK L + + IMPG+TH Q A PI +LL++
Sbjct: 117 VVTDLKLLLKSSISVISTHLLQLIKTLVERAAIEIDIIMPGYTHLQKALPIRWSQFLLSH 176
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A RD RL + +KR+ + PLGS LAG I+R L LD + NS+D+IS+R
Sbjct: 177 AVALTRDSERLGEVKKRITVLPLGSGVLAGNPLEIDRELLRSELDMTSITLNSIDAISER 236
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL- 180
DFV+E IS L+++HLS+++E+ IIF +F F+TL +++ TGSS++PQKKNPD +L
Sbjct: 237 DFVVELISVATLLMIHLSKLAEDLIIFSTTEFGFVTLSDAYSTGSSLLPQKKNPDSLELI 296
Query: 181 RQRAALAGTTHHINRYLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIV 232
R +A + L A L+ + PS S D D++ V++ + T ++
Sbjct: 297 RSKAG------RVFGRLAAILMVLKGIPSTFSKDLQEDKEAVLDVVDTLTAVL 343
>pdb|1AOS|A Chain A, Human Argininosuccinate Lyase
pdb|1AOS|B Chain B, Human Argininosuccinate Lyase
Length = 464
Score = 182 bits (463), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 150/260 (57%), Gaps = 1/260 (0%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
A+AG ++R L L+F + NS+D+ S+RDFV EF+ L + HLSR++E+ I
Sbjct: 202 GAIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLI 261
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
++ +F+F+ L +++ TGSS+MPQKKNPD LELIR K GR++ +L T+K Y
Sbjct: 262 LYCTKEFSFVQLSDAYSTGSSLMPQKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTY 321
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
NKDLQEDK +F+ D + L + +I +++ M + A+ ++TD+A YLV+K
Sbjct: 322 NKDLQEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQ-ALSPDMLATDLAYYLVRK 380
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
G+PFR +HE G + K LSL EL+T S D+I + +S++ +
Sbjct: 381 GMPFRQAHEASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRHSVEQYGAL 440
Query: 424 GGTSPEQVKITVQGFRFYIQ 443
GGT+ V ++ R +Q
Sbjct: 441 GGTARSSVDWQIRQVRALLQ 460
Score = 165 bits (417), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 77/185 (41%), Positives = 120/185 (64%), Gaps = 1/185 (0%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+VTDLRL+ R+ + LL +I+ + D ++ + PG+TH Q AQPI H++L++
Sbjct: 117 VVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSH 176
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A RD RL++ RKR+N+ PLGS A+AG ++R L L+F + NS+D+ S+R
Sbjct: 177 AVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVDRELLRAELNFGAITLNSMDATSER 236
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL- 180
DFV EF+ L + HLSR++E+ I++ +F+F+ L +++ TGSS+MPQKKNPD +L
Sbjct: 237 DFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSSLMPQKKNPDSLELI 296
Query: 181 RQRAA 185
R +A
Sbjct: 297 RSKAG 301
>pdb|1K62|A Chain A, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
pdb|1K62|B Chain B, Crystal Structure Of The Human Argininosuccinate Lyase
Q286r Mutant
Length = 464
Score = 180 bits (457), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 95/260 (36%), Positives = 150/260 (57%), Gaps = 1/260 (0%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
A+AG ++R L L+F + NS+D+ S+RDFV EF+ L + HLSR++E+ I
Sbjct: 202 GAIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLI 261
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
++ +F+F+ L +++ TGSS+MP+KKNPD LELIR K GR++ +L T+K Y
Sbjct: 262 LYCTKEFSFVQLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTY 321
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
NKDLQEDK +F+ D + L + +I +++ M + A+ ++TD+A YLV+K
Sbjct: 322 NKDLQEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQ-ALSPDMLATDLAYYLVRK 380
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
G+PFR +HE G + K LSL EL+T S D+I + +S++ +
Sbjct: 381 GMPFRQAHEASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRHSVEQYGAL 440
Query: 424 GGTSPEQVKITVQGFRFYIQ 443
GGT+ V ++ R +Q
Sbjct: 441 GGTARSSVDWQIRQVRALLQ 460
Score = 162 bits (411), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 76/185 (41%), Positives = 120/185 (64%), Gaps = 1/185 (0%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+VTDLRL+ R+ + LL +I+ + D ++ + PG+TH Q AQPI H++L++
Sbjct: 117 VVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSH 176
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A RD RL++ RKR+N+ PLGS A+AG ++R L L+F + NS+D+ S+R
Sbjct: 177 AVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVDRELLRAELNFGAITLNSMDATSER 236
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL- 180
DFV EF+ L + HLSR++E+ I++ +F+F+ L +++ TGSS+MP+KKNPD +L
Sbjct: 237 DFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSSLMPRKKNPDSLELI 296
Query: 181 RQRAA 185
R +A
Sbjct: 297 RSKAG 301
>pdb|1Q5N|A Chain A, Crystal Structure Of Beta-Carboxy-Cis,Cis-Muconate
Cycloisomerase (Cmle) From Acinetobacter Calcoaceticus
Sp. Adp1
Length = 454
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/140 (29%), Positives = 72/140 (51%), Gaps = 4/140 (2%)
Query: 39 IMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSA--ALAGTTHHI 96
+M G T Q A PI+LGH L +AS F+RD++R+ + RV ++ LG A +LA
Sbjct: 151 VMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVLVAQLGGAVGSLASLQDQG 210
Query: 97 NRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 156
+ + A K + + +RD ++E S +I ++ +++ ++ + M + +
Sbjct: 211 SIVVEAYAKQL-KLGQTACTWHGERDRIVEIASVLGIITGNVGKMARDWSLMMQTEIAEV 269
Query: 157 TLPES-FLTGSSIMPQKKNP 175
P + GSS MP K+NP
Sbjct: 270 FEPTAKGRGGSSTMPHKRNP 289
Score = 35.8 bits (81), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 216 SDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPES-FLTGSSIMPQKKNPDV 274
+RD ++E S +I ++ +++ ++ + M + + P + GSS MP K+NP
Sbjct: 232 GERDRIVEIASVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVA 291
Query: 275 LELIRGKTGRIYANLINILTTM 296
+ R+ A + +I +M
Sbjct: 292 AASVLAAANRVPALMSSIYQSM 313
>pdb|3C8T|A Chain A, Crystal Structure Of Fumarate Lyase From Mesorhizobium Sp.
Bnc1
Length = 451
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 62/210 (29%), Positives = 93/210 (44%), Gaps = 17/210 (8%)
Query: 8 LYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQR 67
L R + +I + ++ K L L+ H T M G TH Q A P++ G+ + S F R
Sbjct: 114 LQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTHLQHALPVTFGYKAAVWLSAFDR 173
Query: 68 DINRLIDCRKRVNI----SPLGSAALAGTTH-HINRYLTAKLLDFEKPSENSLDSISDRD 122
RL + RV + G+ A GT + R L A+ L+ P S+ S RD
Sbjct: 174 HAARLEEISPRVLVVEFSGASGTLASLGTRGLDVQREL-ARELNLGVP---SITWHSARD 229
Query: 123 FVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTG-SSIMPQKKNPDVKDLR 181
V E + L+ L +++ + I M + + P G SS MPQK+NP +L
Sbjct: 230 AVAETVQFLALVSGSLGKLAMDISIMMTTELGEVAEPFVRHRGASSTMPQKQNPVSCEL- 288
Query: 182 QRAALAGT---THHINRYLTAKLLDFEKPS 208
LAG +H L A + DFE+ +
Sbjct: 289 ---ILAGARIVRNHATSMLDAMIHDFERAT 315
Score = 34.7 bits (78), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 216 SDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTG-SSIMPQKKNPDV 274
S RD V E + L+ L +++ + I M + + P G SS MPQK+NP
Sbjct: 226 SARDAVAETVQFLALVSGSLGKLAMDISIMMTTELGEVAEPFVRHRGASSTMPQKQNPVS 285
Query: 275 LELI 278
ELI
Sbjct: 286 CELI 289
>pdb|1J3U|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|1J3U|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
pdb|3R6Q|A Chain A, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|B Chain B, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|C Chain C, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|D Chain D, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|E Chain E, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|F Chain F, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|G Chain G, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6Q|H Chain H, A Triclinic-Lattice Structure Of Aspartase From Bacillus
Sp. Ym55-1
pdb|3R6V|A Chain A, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|B Chain B, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|C Chain C, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|D Chain D, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|E Chain E, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|F Chain F, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|G Chain G, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
pdb|3R6V|H Chain H, Crystal Structure Of Aspartase From Bacillus Sp. Ym55-1
With Bound L- Aspartate
Length = 468
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/277 (25%), Positives = 122/277 (44%), Gaps = 29/277 (10%)
Query: 17 IIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCR 76
+IE M + +D+ A I G TH Q A PI LG AYA + RDI R+ + R
Sbjct: 160 LIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTR 219
Query: 77 KRVNISPLGSAALAGTTHHINRYL---TAKLLDFE----KPSENSLDSISDRDFVIEFIS 129
+ +G+ A+ + Y+ T L F + +++ +D+ + D E S
Sbjct: 220 NNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSS 279
Query: 130 TCCLIVMHLSRISEEF-IIFMNPQFNF--LTLPESFLTGSSIMPQKKNPDVKDLRQRAAL 186
+ ++++S+I+ + ++ P+ + LP + GSSIMP K NP + ++ + A
Sbjct: 280 ALKVCMINMSKIANDLRLMASGPRAGLSEIVLP-ARQPGSSIMPGKVNPVMPEVMNQVAF 338
Query: 187 AGTTHHINRYLTAKLLDFE----KPSE--NSLDSISDRDFVIEFISTCCL--IVMHLSRI 238
+ + ++ FE +P N + SIS V + + CL I + R+
Sbjct: 339 QVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERM 398
Query: 239 SE------EFIIFMNPQFNFLTLP----ESFLTGSSI 265
E I +NP + T E++LTG SI
Sbjct: 399 KEYVEKSIGIITAINPHVGYETAAKLAREAYLTGESI 435
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 190 THHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEF-IIFMNP 248
T H+ ++ L + +++ +D+ + D E S + ++++S+I+ + ++ P
Sbjct: 247 TEHLAKFSGHPL----RSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGP 302
Query: 249 QFNF--LTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYN 304
+ + LP + GSSIMP K NP + E++ +++ N + I + + N
Sbjct: 303 RAGLSEIVLP-ARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELN 359
>pdb|1RE5|A Chain A, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|B Chain B, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|C Chain C, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
pdb|1RE5|D Chain D, Crystal Structure Of 3-Carboxy-Cis,Cis-Muconate
Lactonizing Enzyme From Pseudomonas Putida
Length = 450
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/180 (28%), Positives = 75/180 (41%), Gaps = 14/180 (7%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
T L L R +D+I L + L+ + KHA T + G T Q A P++LG L
Sbjct: 112 TGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLG 171
Query: 64 MFQRDINRLIDCRKRVNISPLGS-----AALAGTTHHINRYLTA--KLLDFEKPSENSLD 116
R RL + R R+ + G AAL + L KL E+P
Sbjct: 172 ALTRHRQRLQELRPRLLVLQFGGASGSLAALGSKAMPVAEALAEQLKLTLPEQPWH---- 227
Query: 117 SISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPES-FLTGSSIMPQKKNP 175
+ RD ++EF S L+ L + + + M + + P + GSS MP K+NP
Sbjct: 228 --TQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNP 285
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 53/129 (41%), Gaps = 15/129 (11%)
Query: 216 SDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPES-FLTGSSIMPQKKNPDV 274
+ RD ++EF S L+ L + + + M + + P + GSS MP K+NP
Sbjct: 228 TQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVG 287
Query: 275 LELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPL----FDTVDNIIMCLVASGK 330
++ G R+ L + M + E L L ++T+ +I C + SG
Sbjct: 288 AAVLIGAATRVPGLLSTLFAAMPQE--------HERSLGLWHAEWETLPDI--CCLVSGA 337
Query: 331 LIEKATFNE 339
L + E
Sbjct: 338 LRQAQVIAE 346
>pdb|3R6Y|A Chain A, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|B Chain B, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|C Chain C, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|D Chain D, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|E Chain E, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|F Chain F, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|G Chain G, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
pdb|3R6Y|H Chain H, Crystal Structure Of Chymotrypsin-Treated Aspartase From
Bacillus Sp. Ym55-1
Length = 401
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 85/179 (47%), Gaps = 11/179 (6%)
Query: 17 IIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCR 76
+IE M + +D+ A I G TH Q A PI LG AYA + RDI R+ + R
Sbjct: 160 LIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTR 219
Query: 77 KRVNISPLGSAALAGTTHHINRYL---TAKLLDFE----KPSENSLDSISDRDFVIEFIS 129
+ +G+ A+ + Y+ T L F + +++ +D+ + D E S
Sbjct: 220 NNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSS 279
Query: 130 TCCLIVMHLSRISEEF-IIFMNPQFNF--LTLPESFLTGSSIMPQKKNPDVKDLRQRAA 185
+ ++++S+I+ + ++ P+ + LP + GSSIMP K NP + ++ + A
Sbjct: 280 ALKVCMINMSKIANDLRLMASGPRAGLSEIVLP-ARQPGSSIMPGKVNPVMPEVMNQVA 337
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 25/118 (21%), Positives = 57/118 (48%), Gaps = 8/118 (6%)
Query: 190 THHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEF-IIFMNP 248
T H+ ++ L + +++ +D+ + D E S + ++++S+I+ + ++ P
Sbjct: 247 TEHLAKFSGHPL----RSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGP 302
Query: 249 QFNF--LTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYN 304
+ + LP + GSSIMP K NP + E++ +++ N + I + + N
Sbjct: 303 RAGLSEIVLP-ARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELN 359
>pdb|3GTD|A Chain A, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
pdb|3GTD|B Chain B, 2.4 Angstrom Crystal Structure Of Fumarate Hydratase From
Rickettsia Prowazekii
Length = 482
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 49/169 (28%), Positives = 79/169 (46%), Gaps = 11/169 (6%)
Query: 17 IIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCR 76
+I L ++ +L D S K I G TH Q A P++L Y + + + R+ D
Sbjct: 181 LIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDAL 240
Query: 77 KRVNISPLGSAALA-GTTHHI--NRYLTAKLLDFE----KPSENSLDSISDRDFVIEFIS 129
K+V + G A+ G I + K+ +F K + N +S++ D ++EF
Sbjct: 241 KKVYLLAQGGTAVGTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSG 300
Query: 130 TCCLIVMHLSRISEEF-IIFMNPQFNF--LTLPESFLTGSSIMPQKKNP 175
T I + L +I+ + ++ P+ L LPE+ GSSIMP K NP
Sbjct: 301 TLNTIAVSLMKIANDIRLLGSGPRCGLGELHLPEN-EPGSSIMPGKVNP 348
Score = 37.7 bits (86), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 4/90 (4%)
Query: 206 KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEF-IIFMNPQFNF--LTLPESFLTG 262
K + N +S++ D ++EF T I + L +I+ + ++ P+ L LPE+ G
Sbjct: 280 KTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGPRCGLGELHLPEN-EPG 338
Query: 263 SSIMPQKKNPDVLELIRGKTGRIYANLINI 292
SSIMP K NP +E + ++ N + +
Sbjct: 339 SSIMPGKVNPTQVEALTMVCTQVMGNHVTV 368
>pdb|3RRP|A Chain A, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
pdb|3RRP|B Chain B, Crystal Structure Of Fumarate Hydratase Fum From
Mycobacterium Abscessus With Malate Bound
Length = 471
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/155 (27%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 34 KHAKTIM-PGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGT 92
K KT++ G TH A P++LG YA + I R+ R+ P+G A+ GT
Sbjct: 178 KAWKTVVKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGELPIGGTAV-GT 236
Query: 93 THHINRYLTAKLLDFEKPS---------ENSLDSISDRDFVIEFISTCCLIVMHLSRISE 143
+ AK+++ K S +S ++ + RD ++E I L++I+
Sbjct: 237 GLNAPDGFGAKVVEVLKQSTGLSELKTASDSFEAQAARDGLVEGSGALKTIAASLTKIAN 296
Query: 144 EFIIFMNPQFNFLT---LPESFLTGSSIMPQKKNP 175
+ + L LP+ GSSIMP K NP
Sbjct: 297 DIRWMGSGPLTGLGEIQLPD-LQPGSSIMPGKVNP 330
>pdb|1C3C|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3C|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 429
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 10/165 (6%)
Query: 16 IIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDC 75
I++E L L ++++++ T G TH A+P S G +L + S +R++ RL
Sbjct: 111 ILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERA 170
Query: 76 RKRVNISPLGSAALAGTTHHINRYLTAKLLDFE--KPSENSLDSISDRDFVIEFISTCCL 133
+ V+ + A G ++ + K L + KP S + RD ++ST +
Sbjct: 171 IEEVSYGKISGAV--GNYANVPPEVEEKALSYLGLKPEPVSTQVVP-RDRHAFYLSTLAI 227
Query: 134 IVMHLSRISEEFIIFMNPQFNFLTLPESFLTG---SSIMPQKKNP 175
+ + RI+ E + L + E F G SS MP KKNP
Sbjct: 228 VAAGIERIAVEIRHLQRTEV--LEVEEPFRKGQRGSSAMPHKKNP 270
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 19/180 (10%)
Query: 218 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTG---SSIMPQKKNPDV 274
RD ++ST ++ + RI+ E + L + E F G SS MP KKNP
Sbjct: 215 RDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEV--LEVEEPFRKGQRGSSAMPHKKNPIT 272
Query: 275 LELIRG--KTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLF---DTVDNIIMCLVASG 329
E + G + R Y + +++ L + +D+ + + D + +V +
Sbjct: 273 CERLTGLSRMMRAYVD-----PSLENIALWHERDISHSSVERYVFPDATQTLYYMIVTAT 327
Query: 330 KLIEKATFNEQEMYET--AIKGFSISTDVADYLVKKGVPFRTSHEIV--GSIIKYCNEKH 385
++ NE+ M + KG S V L++KG+ + +++IV ++ + +EKH
Sbjct: 328 NVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKH 387
>pdb|2PFM|A Chain A, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
pdb|2PFM|B Chain B, Crystal Structure Of Adenylosuccinate Lyase (Purb) From
Bacillus Anthracis
Length = 444
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 75/169 (44%), Gaps = 16/169 (9%)
Query: 15 DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLID 74
+II++ L + L + + +H TIM G TH A+P + G L + +R++ R
Sbjct: 122 EIILKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVERFKQ 181
Query: 75 CRKRVNISPLGSAALAGTTHHIN----RYLTAKL-LDFEKPSENSLDSISDRDFVIEFIS 129
V + L A GT +I+ +Y+ L L+ S +L RD ++S
Sbjct: 182 AANTVRVGKLSGA--VGTYANIDPFVEKYVCENLGLEAAPISTQTL----QRDRHAHYMS 235
Query: 130 TCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL---TGSSIMPQKKNP 175
T LI + +++ E + + E+F GSS MP K+NP
Sbjct: 236 TLALIATSIEKMAVEIRGLQKSETR--EVEEAFAKGQKGSSAMPHKRNP 282
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 44/216 (20%), Positives = 85/216 (39%), Gaps = 27/216 (12%)
Query: 218 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTG---SSIMPQKKNP-- 272
RD ++ST LI + +++ E + + E+F G SS MP K+NP
Sbjct: 227 RDRHAHYMSTLALIATSIEKMAVEIRGLQKSETR--EVEEAFAKGQKGSSAMPHKRNPIG 284
Query: 273 -----DVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE---DKLPLFDTVDNIIMC 324
+ +IRG Y N+ L + +D+ +++ L D +
Sbjct: 285 SENMTGLARVIRGYMMTAYENV----------PLWHERDISHSSAERVILPDATIALNYM 334
Query: 325 LVASGKLIEKATFNEQEMYETAIKGFSI--STDVADYLVKKGVPFRTSHEIVGSIIKYCN 382
L G +++ T + M + + + S V L+ KG+ +++IV
Sbjct: 335 LNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKGMVREEAYDIVQPKAMEAW 394
Query: 383 EKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIK 418
E FK+L A+ + ++I + E+ ++
Sbjct: 395 ETQVQFKELVEADERITSKLTQEEINECFNYEHHMQ 430
>pdb|1C3U|A Chain A, T. Maritima Adenylosuccinate Lyase
pdb|1C3U|B Chain B, T. Maritima Adenylosuccinate Lyase
Length = 431
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 10/165 (6%)
Query: 16 IIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDC 75
I++E L L ++++++ T G TH A+P S G +L + S +R++ RL
Sbjct: 112 ILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERA 171
Query: 76 RKRVNISPLGSAALAGTTHHINRYLTAKLLDFE--KPSENSLDSISDRDFVIEFISTCCL 133
+ V+ + A G ++ + K L + KP S + RD ++ST +
Sbjct: 172 IEEVSYGKISGAV--GNYANVPPEVEEKALSYLGLKPEPVSTQVVP-RDRHAFYLSTLAI 228
Query: 134 IVMHLSRISEEFIIFMNPQFNFLTLPESFLTG---SSIMPQKKNP 175
+ + RI+ E + L + E F G SS MP KKNP
Sbjct: 229 VAAGIERIAVEIRHLQRTEV--LEVEEPFRKGQRGSSAMPHKKNP 271
Score = 41.6 bits (96), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 42/180 (23%), Positives = 79/180 (43%), Gaps = 19/180 (10%)
Query: 218 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTG---SSIMPQKKNPDV 274
RD ++ST ++ + RI+ E + L + E F G SS MP KKNP
Sbjct: 216 RDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEV--LEVEEPFRKGQRGSSAMPHKKNPIT 273
Query: 275 LELIRG--KTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLF---DTVDNIIMCLVASG 329
E + G + R Y + +++ L + +D+ + + D + +V +
Sbjct: 274 CERLTGLSRMMRAYVD-----PSLENIALWHERDISHSSVERYVFPDATQTLYYMIVTAT 328
Query: 330 KLIEKATFNEQEMYET--AIKGFSISTDVADYLVKKGVPFRTSHEIV--GSIIKYCNEKH 385
++ NE+ M + KG S V L++KG+ + +++IV ++ + +EKH
Sbjct: 329 NVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKH 388
>pdb|4ADL|A Chain A, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|B Chain B, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|C Chain C, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADL|D Chain D, Crystal Structures Of Rv1098c In Complex With Malate
pdb|4ADM|A Chain A, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|B Chain B, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|C Chain C, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
pdb|4ADM|D Chain D, Crystal Structure Of Rv1098c In Complex With Meso-Tartrate
Length = 495
Score = 48.1 bits (113), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 19/184 (10%)
Query: 10 TRKHIDIIIELLLTMIKHLTDLSDKHAK-------TIMPGFTHFQIAQPISLGHYLLAYA 62
T HI + +I L L D A + G TH A P++LG YA
Sbjct: 167 TATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYA 226
Query: 63 SMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY-------LTAKL-LDFEKPSENS 114
+ I R+ C R+ +G A+ + + + L A+ L + + NS
Sbjct: 227 RQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAANS 286
Query: 115 LDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLT---LPESFLTGSSIMPQ 171
++ + RD ++E I + L++I+ + + L LP+ GSSIMP
Sbjct: 287 FEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPD-LQPGSSIMPG 345
Query: 172 KKNP 175
K NP
Sbjct: 346 KVNP 349
>pdb|3NO9|A Chain A, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|B Chain B, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|C Chain C, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
pdb|3NO9|D Chain D, Crystal Structure Of Apo Fumarate Hydratase From
Mycobacterium Tuberculosis
Length = 475
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/184 (25%), Positives = 74/184 (40%), Gaps = 19/184 (10%)
Query: 10 TRKHIDIIIELLLTMIKHLTDLSDKHAK-------TIMPGFTHFQIAQPISLGHYLLAYA 62
T HI + +I L L D A + G TH A P++LG YA
Sbjct: 146 TATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYA 205
Query: 63 SMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY-------LTAKL-LDFEKPSENS 114
+ I R+ C R+ +G A+ + + + L A+ L + + NS
Sbjct: 206 RQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAANS 265
Query: 115 LDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLT---LPESFLTGSSIMPQ 171
++ + RD ++E I + L++I+ + + L LP+ GSSIMP
Sbjct: 266 FEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPD-LQPGSSIMPG 324
Query: 172 KKNP 175
K NP
Sbjct: 325 KVNP 328
>pdb|2X75|A Chain A, Staphylococcus Aureus Adenylosuccinate Lyase
Length = 431
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/181 (25%), Positives = 76/181 (41%), Gaps = 12/181 (6%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
++ T L ++ DII + L I L + + + T+M G TH A+P + G +
Sbjct: 97 VVDTALSFVIKQANDIIEKDLERFIDVLAEKAKNYKYTLMMGRTHGVHAEPTTFGVKMAL 156
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSA--ALAGTTHHINRYLTAKLLDFEKP-SENSLDS 117
+ + QR++ R R+ + + + A A I Y+ L P S +L
Sbjct: 157 WYTEMQRNLQRFKQVREEIEVGKMSGAVGTFANIPPEIESYVCKHLGIGTAPVSTQTL-- 214
Query: 118 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL---TGSSIMPQKKN 174
RD +I+T LI L + + E + + E+F GSS MP K+N
Sbjct: 215 --QRDRHAYYIATLALIATSLEKFAVEIRNLQKTETR--EVEEAFAKGQKGSSAMPHKRN 270
Query: 175 P 175
P
Sbjct: 271 P 271
Score = 28.1 bits (61), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 34/82 (41%), Gaps = 12/82 (14%)
Query: 218 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTG---SSIMPQKKNP-- 272
RD +I+T LI L + + E + + E+F G SS MP K+NP
Sbjct: 216 RDRHAYYIATLALIATSLEKFAVEIRNLQKTETR--EVEEAFAKGQKGSSAMPHKRNPIG 273
Query: 273 -----DVLELIRGKTGRIYANL 289
+ +IRG Y N+
Sbjct: 274 SENITGISRVIRGYITTAYENV 295
>pdb|4APA|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
pdb|4APA|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase
(Rv1098c) S318a In Apo Form
Length = 474
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 74/184 (40%), Gaps = 19/184 (10%)
Query: 10 TRKHIDIIIELLLTMIKHLTDLSDKHAK-------TIMPGFTHFQIAQPISLGHYLLAYA 62
T HI + +I L L D A + G TH A P++LG YA
Sbjct: 145 TATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYA 204
Query: 63 SMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY-------LTAKL-LDFEKPSENS 114
+ I R+ C R+ +G A+ + + + L A+ L + + NS
Sbjct: 205 RQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAANS 264
Query: 115 LDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLT---LPESFLTGSSIMPQ 171
++ + RD ++E I + L++I+ + + L LP+ G+SIMP
Sbjct: 265 FEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPD-LQPGASIMPG 323
Query: 172 KKNP 175
K NP
Sbjct: 324 KVNP 327
>pdb|4APB|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|C Chain C, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
pdb|4APB|D Chain D, Crystal Structure Of Mycobacterium Tuberculosis Fumarase (
Rv1098c) S318c In Complex With Fumarate
Length = 474
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/184 (24%), Positives = 73/184 (39%), Gaps = 19/184 (10%)
Query: 10 TRKHIDIIIELLLTMIKHLTDLSDKHAK-------TIMPGFTHFQIAQPISLGHYLLAYA 62
T HI + +I L L D A + G TH A P++LG YA
Sbjct: 145 TATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYA 204
Query: 63 SMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY-------LTAKL-LDFEKPSENS 114
+ I R+ C R+ +G A+ + + + L A+ L + + NS
Sbjct: 205 RQIEAGIERVRACLPRLGELAIGGTAVGTGLNAPDDFGVRVVAVLVAQTGLSELRTAANS 264
Query: 115 LDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLT---LPESFLTGSSIMPQ 171
++ + RD ++E I + L++I+ + + L LP+ G SIMP
Sbjct: 265 FEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGPLTGLAEIQLPD-LQPGCSIMPG 323
Query: 172 KKNP 175
K NP
Sbjct: 324 KVNP 327
>pdb|3RD8|A Chain A, Crystal Structure Of Fumarate Hydratase Class Ii
Mycobacterium Smegmatis
Length = 489
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 68/155 (43%), Gaps = 15/155 (9%)
Query: 34 KHAKTIM-PGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGT 92
K +T++ G TH A P++LG YA + I R+ R+ +G A+ GT
Sbjct: 194 KQWRTVVKSGRTHLMDAVPVTLGQEFGGYARQIEAGIERVKATLPRLGELAIGGTAV-GT 252
Query: 93 THHINRYLTAKLLDF---------EKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 143
+ AK+++ + + +S ++ + RD ++E I + L++I+
Sbjct: 253 GLNAPEGFGAKVVEVLVNETGLAELRTAVDSFEAQAARDGLVEASGALRTIAVSLTKIAN 312
Query: 144 EFIIFMNPQFNFLT---LPESFLTGSSIMPQKKNP 175
+ + L LP+ GSSIMP K NP
Sbjct: 313 DIRWMGSGPLTGLAEIQLPD-LQPGSSIMPGKVNP 346
>pdb|3QBP|A Chain A, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|B Chain B, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|C Chain C, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
pdb|3QBP|D Chain D, Crystal Structure Of Fumarase Fum From Mycobacterium
Marinum
Length = 478
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/150 (25%), Positives = 62/150 (41%), Gaps = 22/150 (14%)
Query: 42 GFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTT-------- 93
G TH A P++LG YA + I R+ R + LG A+ GT
Sbjct: 193 GRTHLMDAVPVTLGQEFSGYARQIEAGIERV-----RATLPRLGELAIGGTAVGTGLNAP 247
Query: 94 -----HHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIF 148
++ ++ L + + NS ++ + RD ++E I + L++I+ +
Sbjct: 248 EGFGVKVVSVLVSQTGLPQLRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWM 307
Query: 149 MNPQFNFLT---LPESFLTGSSIMPQKKNP 175
+ L LP+ GSSIMP K NP
Sbjct: 308 GSGPLTGLAEIQLPD-LQPGSSIMPGKVNP 336
>pdb|1F1O|A Chain A, Structural Studies Of Adenylosuccinate Lyases
Length = 431
Score = 45.1 bits (105), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 75/170 (44%), Gaps = 18/170 (10%)
Query: 15 DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLID 74
DI+++ L + + + + +H T+M G TH A+P + G L + +R++ R
Sbjct: 111 DILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEEMKRNLERFKQ 170
Query: 75 CRKRVNISPLGSAALAGTTHHIN----RYLTAKLLDFEKP-SENSLDSISDRDFVIEFIS 129
+ + + + A GT +I+ +Y+ KL P S +L RD ++++
Sbjct: 171 AKAGIEVGKISGA--VGTYANIDPFVEQYVCEKLGLKAAPISTQTL----QRDRHADYMA 224
Query: 130 TCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLT----GSSIMPQKKNP 175
T LI + + + E + + E F GSS MP K+NP
Sbjct: 225 TLALIATSIEKFAVEIRGLQKSETREV---EEFFAKGQKGSSAMPHKRNP 271
>pdb|1YFM|A Chain A, Recombinant Yeast Fumarase
Length = 488
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 46/182 (25%), Positives = 80/182 (43%), Gaps = 22/182 (12%)
Query: 13 HIDIIIELLLTMIKHLTDLSDK-HAKT------IMPGFTHFQIAQPISLGHYLLAYASMF 65
HI +++ +I LT+L + AK+ + G TH Q A P++LG Y
Sbjct: 174 HIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQV 233
Query: 66 QRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKL---------LDFEKPSENSLD 116
+ I R+ K ++ G A+ GT + K+ L F+ + N +
Sbjct: 234 ENGIQRVAHSLKTLSFLAQGGTAV-GTGLNTKPGFDVKIAEQISKETGLKFQT-APNRFE 291
Query: 117 SISDRDFVIEFISTCCLIVMHLSRISEEF-IIFMNPQFNF--LTLPESFLTGSSIMPQKK 173
+++ D ++E + L +I+++ + P+ + L LPE+ GSSIMP K
Sbjct: 292 ALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPEN-EPGSSIMPGKV 350
Query: 174 NP 175
NP
Sbjct: 351 NP 352
>pdb|3OCF|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
pdb|3OCF|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis In Native Form
Length = 478
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 11/150 (7%)
Query: 36 AKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHH 95
A I G T Q A PI+LG A+A+ + D RL + LG A+ +
Sbjct: 199 ATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINA 258
Query: 96 INRYLTAKLLDFE-------KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEF-II 147
+ Y +++ K + N +++ D + F I + LS+I+ + ++
Sbjct: 259 SHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLL 318
Query: 148 FMNPQFNF--LTLPESFLTGSSIMPQKKNP 175
P+ + LP + GSSIMP K NP
Sbjct: 319 SSGPRSGLGEIRLP-AVQPGSSIMPGKVNP 347
>pdb|3OCE|A Chain A, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|B Chain B, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|C Chain C, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
pdb|3OCE|D Chain D, Crystal Structure Of Fumarate Lyase:delta Crystallin From
Brucella Melitensis Bound To Cobalt
Length = 474
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 64/150 (42%), Gaps = 11/150 (7%)
Query: 36 AKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHH 95
A I G T Q A PI+LG A+A+ + D RL + LG A+ +
Sbjct: 182 ATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFREVNLGGTAIGTRINA 241
Query: 96 INRYLTAKLLDFE-------KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEF-II 147
+ Y +++ K + N +++ D + F I + LS+I+ + ++
Sbjct: 242 SHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLL 301
Query: 148 FMNPQFNF--LTLPESFLTGSSIMPQKKNP 175
P+ + LP + GSSIMP K NP
Sbjct: 302 SSGPRSGLGEIRLP-AVQPGSSIMPGKVNP 330
>pdb|2FEL|A Chain A, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|B Chain B, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|D Chain D, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|C Chain C, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|E Chain E, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|F Chain F, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|G Chain G, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|H Chain H, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|I Chain I, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|J Chain J, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|L Chain L, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEL|K Chain K, 3-carboxy-cis,cis-muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|A Chain A, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|B Chain B, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|D Chain D, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|C Chain C, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|E Chain E, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|F Chain F, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|H Chain H, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|G Chain G, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|I Chain I, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|J Chain J, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|L Chain L, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
pdb|2FEN|K Chain K, 3-Carboxy-Cis,Cis-Muconate Lactonizing Enzyme From
Agrobacterium Radiobacter S2
Length = 359
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 74/180 (41%), Gaps = 13/180 (7%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
+I T L L + +II L +I L DL+ + + G+T Q A I++
Sbjct: 111 VIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAIGITVADRAAG 170
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSAA-----LAGTTHHINRYLTAKLLDFEKPSENSL 115
+ + +R + RL + G AA L + L +L ++P +
Sbjct: 171 WIAPLERHLLRLETFAQNGFALQFGGAAGTLEKLGDNAGAVRADLAKRLGLADRPQWH-- 228
Query: 116 DSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNP 175
+ RD + EF + L+ L + ++ I M + + L S GSS MP K+NP
Sbjct: 229 ---NQRDGIAEFANLLSLVTGTLGKFGQD-IALMAEIGSEIRL--SGGGGSSAMPHKQNP 282
>pdb|1VDK|A Chain A, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
pdb|1VDK|B Chain B, Crystal Structure Of Fumarase From Thermus Thermophilus
Hb8
Length = 466
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/163 (23%), Positives = 74/163 (45%), Gaps = 13/163 (7%)
Query: 24 MIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV-NIS 82
+I+ T + + + G TH A PI+LG + ++A+ + + + + K + N++
Sbjct: 167 LIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGLYNLA 226
Query: 83 PLGSAALAGTTHHINRY--LTAKLLDFE-----KPSENSLDSISDRDFVIEFISTCCLIV 135
G+A G H R+ L AK L E + +EN +++ D ++ + +
Sbjct: 227 IGGTAVGTGLNAH-PRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLA 285
Query: 136 MHLSRISEEFIIFMNPQF---NFLTLPESFLTGSSIMPQKKNP 175
L +I + + + +T+P + GSSIMP K NP
Sbjct: 286 GALMKIGNDVRWLASGPYAGIGEITIPANE-PGSSIMPGKVNP 327
>pdb|3E04|A Chain A, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|B Chain B, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|C Chain C, Crystal Structure Of Human Fumarate Hydratase
pdb|3E04|D Chain D, Crystal Structure Of Human Fumarate Hydratase
Length = 490
Score = 40.0 bits (92), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 50/186 (26%), Positives = 77/186 (41%), Gaps = 24/186 (12%)
Query: 10 TRKHIDIIIEL---LLTMIKHLTDL----SDKHAKTIMPGFTHFQIAQPISLGHYLLAYA 62
T HI IE+ LL ++ L D S + A+ I G TH Q A P++LG Y
Sbjct: 173 TAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYV 232
Query: 63 SMFQRDINRLIDCRKRV-NISPLGSAALAGTTHHIN---------RYLTAKLLDFEKPSE 112
+ + R+ R+ ++ G+A G I LT L F +
Sbjct: 233 QQVKYAMTRIKAAMPRIYELAAGGTAVGTGLNTRIGFAEKVAAKVAALTG--LPFVT-AP 289
Query: 113 NSLDSISDRDFVIEFISTCCLIVMHLSRISEEF-IIFMNPQFNF--LTLPESFLTGSSIM 169
N ++++ D ++E L +I+ + + P+ L LPE+ GSSIM
Sbjct: 290 NKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILPEN-EPGSSIM 348
Query: 170 PQKKNP 175
P K NP
Sbjct: 349 PGKVNP 354
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 71/176 (40%), Gaps = 23/176 (13%)
Query: 208 SENSLDSISDRDFVIEFISTCCLIVMHLSRISEEF-IIFMNPQFNF--LTLPESFLTGSS 264
+ N ++++ D ++E L +I+ + + P+ L LPE+ GSS
Sbjct: 288 APNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGPRSGLGELILPEN-EPGSS 346
Query: 265 IMPQKKNPDVLELIRGKTGRIYANLI-------------NILTTMKCQTLAYNKDLQEDK 311
IMP K NP E + ++ N + N+ M + + ++ L D
Sbjct: 347 IMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGSNGHFELNVFKPMMIKNVLHSARLLGDA 406
Query: 312 LPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIK---GFSISTDVADYLVKKG 364
F +N ++ + A+ + I K NE M TA+ G+ + +A K G
Sbjct: 407 SVSF--TENCVVGIQANTERINK-LMNESLMLVTALNPHIGYDKAAKIAKTAHKNG 459
>pdb|4EEI|A Chain A, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
pdb|4EEI|B Chain B, Crystal Structure Of Adenylosuccinate Lyase From
Francisella Tularensis Complexed With Amp And Succinate
Length = 438
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 78/182 (42%), Gaps = 14/182 (7%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
+I + L L R + +I+ L + L +++ + I G +H A+P+S G L
Sbjct: 97 IIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLG 156
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSAALAG----TTHHINRYLTAKLLDFEKPSENSLD 116
F+R + L D +K ++ S A+ TT + A +L P E
Sbjct: 157 AYVEFKRRLKDLKDFQKD-GLTVQFSGAVGNYCILTTEDEKK--AADILGL--PVEEVST 211
Query: 117 SISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESF---LTGSSIMPQKK 173
+ RD + + IS LI + R++ E I + + + E F GSS MP KK
Sbjct: 212 QVIPRDRIAKLISIHGLIASAIERLAVE--IRHLHRSDVFEVYEGFSKGQKGSSTMPHKK 269
Query: 174 NP 175
NP
Sbjct: 270 NP 271
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 57/246 (23%), Positives = 100/246 (40%), Gaps = 25/246 (10%)
Query: 101 TAKLLDFEKPSENSLDS---ISDRD---FVIEFISTCCLIVMHLSRISEEFIIFMNPQFN 154
T K F S + +DS + RD +VI+ + C ++ + ++E II M
Sbjct: 84 TGKFFHFGVTSSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKE-IITMGRSHG 142
Query: 155 FLTLPESF---LTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEK----- 206
P SF G+ + +++ D+KD ++ + + Y D +K
Sbjct: 143 MFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGLTVQFSGAVGNYCILTTEDEKKAADIL 202
Query: 207 --PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESF---LT 261
P E + RD + + IS LI + R++ E I + + + E F
Sbjct: 203 GLPVEEVSTQVIPRDRIAKLISIHGLIASAIERLAVE--IRHLHRSDVFEVYEGFSKGQK 260
Query: 262 GSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDNI 321
GSS MP KKNP E + G R+ + ++I ++ L + +D+ F DN
Sbjct: 261 GSSTMPHKKNPISTENLTG-MARMLRSHVSI--ALENCVLWHERDISHSSAERFYLPDNF 317
Query: 322 IMCLVA 327
+ + A
Sbjct: 318 GIMVYA 323
>pdb|4FLC|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FLC|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 105/264 (39%), Gaps = 39/264 (14%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
TDL + R +D+++ L +I L D + + A GFTHFQ AQ ++G +
Sbjct: 122 TDL-IILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQ 180
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSIS---- 119
D+ L KRV L + GTT +L +L + + LD +
Sbjct: 181 DLCMDLQNL----KRVR-DDLRFRGVKGTTGTQASFL--QLFEGDDHKVEQLDKMVTEKA 233
Query: 120 --DRDFV-----------IEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP-ESFLTG 165
R F+ IE +S + + +I + + N + P E G
Sbjct: 234 GFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLAN--LKEMEEPFEKQQIG 291
Query: 166 SSIMPQKKNPDVKDLRQRAALAGTTHHINRYL----TAKLLDFEKPSENSLDSISDRDFV 221
SS MP K+NP +R + H + + TA + FE+ + DS + R +
Sbjct: 292 SSAMPYKRNP----MRSECCCSLARHLMTLVMDPLQTASVQWFERTLD---DSANRRICL 344
Query: 222 IEFISTCCLIVMHLSRISEEFIIF 245
E T I+ L ISE +++
Sbjct: 345 AEAFLTADTILNTLQNISEGLVVY 368
>pdb|2J91|A Chain A, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|B Chain B, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|C Chain C, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
pdb|2J91|D Chain D, Crystal Structure Of Human Adenylosuccinate Lyase In
Complex With Amp
Length = 503
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 105/264 (39%), Gaps = 39/264 (14%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
TDL + R +D+++ L +I L D + + A GFTHFQ AQ ++G +
Sbjct: 141 TDL-IILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQ 199
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSIS---- 119
D+ L KRV L + GTT +L +L + + LD +
Sbjct: 200 DLCMDLQNL----KRVR-DDLRFRGVKGTTGTQASFL--QLFEGDDHKVEQLDKMVTEKA 252
Query: 120 --DRDFV-----------IEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP-ESFLTG 165
R F+ IE +S + + +I + + N + P E G
Sbjct: 253 GFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLAN--LKEMEEPFEKQQIG 310
Query: 166 SSIMPQKKNPDVKDLRQRAALAGTTHHINRYL----TAKLLDFEKPSENSLDSISDRDFV 221
SS MP K+NP +R + H + + TA + FE+ + DS + R +
Sbjct: 311 SSAMPYKRNP----MRSERCCSLARHLMTLVMDPLQTASVQWFERTLD---DSANRRICL 363
Query: 222 IEFISTCCLIVMHLSRISEEFIIF 245
E T I+ L ISE +++
Sbjct: 364 AEAFLTADTILNTLQNISEGLVVY 387
>pdb|2VD6|A Chain A, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|B Chain B, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|C Chain C, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate.
pdb|2VD6|D Chain D, Human Adenylosuccinate Lyase In Complex With Its Substrate
N6-(1,2-Dicarboxyethyl)-Amp, And Its Products Amp And
Fumarate
Length = 503
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 105/264 (39%), Gaps = 39/264 (14%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
TDL + R +D+++ L +I L D + + A GFTHFQ AQ ++G +
Sbjct: 141 TDL-IILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQ 199
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSIS---- 119
D+ L KRV L + GTT +L +L + + LD +
Sbjct: 200 DLCMDLQNL----KRVR-DDLRFRGVKGTTGTQASFL--QLFEGDDHKVEQLDKMVTEKA 252
Query: 120 --DRDFV-----------IEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP-ESFLTG 165
R F+ IE +S + + +I + + N + P E G
Sbjct: 253 GFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLAN--LKEMEEPFEKQQIG 310
Query: 166 SSIMPQKKNPDVKDLRQRAALAGTTHHINRYL----TAKLLDFEKPSENSLDSISDRDFV 221
SS MP K+NP +R + H + + TA + FE+ + DS + R +
Sbjct: 311 SSAMPYKRNP----MRSERCCSLARHLMTLVMDPLQTASVQWFERTLD---DSANRRICL 363
Query: 222 IEFISTCCLIVMHLSRISEEFIIF 245
E T I+ L ISE +++
Sbjct: 364 AEAFLTADTILNTLQNISEGLVVY 387
>pdb|4FFX|A Chain A, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|B Chain B, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|C Chain C, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
pdb|4FFX|D Chain D, Structural And Biochemical Characterization Of Human
Adenylosuccinate Lyase (Adsl) And The R303c Adsl
Deficiency Associated Mutation
Length = 487
Score = 38.9 bits (89), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 65/264 (24%), Positives = 105/264 (39%), Gaps = 39/264 (14%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
TDL + R +D+++ L +I L D + + A GFTHFQ AQ ++G +
Sbjct: 122 TDL-IILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQ 180
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSIS---- 119
D+ L KRV L + GTT +L +L + + LD +
Sbjct: 181 DLCMDLQNL----KRVR-DDLRFRGVKGTTGTQASFL--QLFEGDDHKVEQLDKMVTEKA 233
Query: 120 --DRDFV-----------IEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP-ESFLTG 165
R F+ IE +S + + +I + + N + P E G
Sbjct: 234 GFKRAFIITGQTYTRKVDIEVLSVLASLGASVHKICTDIRLLAN--LKEMEEPFEKQQIG 291
Query: 166 SSIMPQKKNPDVKDLRQRAALAGTTHHINRYL----TAKLLDFEKPSENSLDSISDRDFV 221
SS MP K+NP +R + H + + TA + FE+ + DS + R +
Sbjct: 292 SSAMPYKRNP----MRSERCCSLARHLMTLVMDPLQTASVQWFERTLD---DSANRRICL 344
Query: 222 IEFISTCCLIVMHLSRISEEFIIF 245
E T I+ L ISE +++
Sbjct: 345 AEAFLTADTILNTLQNISEGLVVY 368
>pdb|1KQ7|A Chain A, E315q Mutant Form Of Fumarase C From E.Coli
pdb|1KQ7|B Chain B, E315q Mutant Form Of Fumarase C From E.Coli
Length = 467
Score = 37.4 bits (85), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 17 IIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCR 76
+I L T+ + L + S A + G TH Q A P++LG + + +M + ++ +
Sbjct: 160 LIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSL 219
Query: 77 KRVNISPLGSAALAGTTHHINRYLTAKLLDFEK--------PSENSLDSISDRDFVIEFI 128
V LG A+ GT + + ++ D + N ++++ D +++
Sbjct: 220 PHVAELALGGTAV-GTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAH 278
Query: 129 STCCLIVMHLSRISEEF-IIFMNPQFNF--LTLPESFLTGSSIMPQKKNP 175
+ L +I+ + + P+ +++PE+ GSSIMP K NP
Sbjct: 279 GALKGLAASLMKIANDVRWLASGPRCGIGEISIPEN-QPGSSIMPGKVNP 327
>pdb|2FUS|A Chain A, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
pdb|2FUS|B Chain B, Mutations Of Fumarase That Distinguish Between The Active
Site And A Nearby Dicarboxylic Acid Binding Site
Length = 467
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 76/177 (42%), Gaps = 27/177 (15%)
Query: 17 IIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCR 76
+I L T+ + L + S A + G TH Q A P++LG + + +M + ++ +
Sbjct: 160 LIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSL 219
Query: 77 KRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVI-----EFISTC 131
V LG A+ GT + + ++ D L I+ FV E ++TC
Sbjct: 220 PHVAELALGGTAV-GTGLNTHPEYARRVAD-------ELAVITCAPFVTAPNKFEALATC 271
Query: 132 -CLIVMH--LSRISEEFIIFMN--------PQFNF--LTLPESFLTGSSIMPQKKNP 175
L+ H L ++ + N P+ +++PE+ GSSIMP K NP
Sbjct: 272 DALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENE-PGSSIMPGKVNP 327
>pdb|1FUO|A Chain A, Fumarase C With Bound Citrate
pdb|1FUO|B Chain B, Fumarase C With Bound Citrate
pdb|1YFE|A Chain A, Crystal Structure Of Apo Fumarase C From Escherichia Coli
Length = 467
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 17 IIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCR 76
+I L T+ + L + S A + G TH Q A P++LG + + +M + ++ +
Sbjct: 160 LIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSL 219
Query: 77 KRVNISPLGSAALAGTTHHINRYLTAKLLDFEK--------PSENSLDSISDRDFVIEFI 128
V LG A+ GT + + ++ D + N ++++ D +++
Sbjct: 220 PHVAELALGGTAV-GTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAH 278
Query: 129 STCCLIVMHLSRISEEF-IIFMNPQFNF--LTLPESFLTGSSIMPQKKNP 175
+ L +I+ + + P+ +++PE+ GSSIMP K NP
Sbjct: 279 GALKGLAASLMKIANDVRWLASGPRCGIGEISIPENE-PGSSIMPGKVNP 327
>pdb|1FUP|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUP|B Chain B, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|A Chain A, Fumarase With Bound Pyromellitic Acid
pdb|1FUQ|B Chain B, Fumarase With Bound Pyromellitic Acid
Length = 472
Score = 37.4 bits (85), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 38/170 (22%), Positives = 75/170 (44%), Gaps = 13/170 (7%)
Query: 17 IIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCR 76
+I L T+ + L + S A + G TH Q A P++LG + + +M + ++ +
Sbjct: 160 LIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSL 219
Query: 77 KRVNISPLGSAALAGTTHHINRYLTAKLLDFEK--------PSENSLDSISDRDFVIEFI 128
V LG A+ GT + + ++ D + N ++++ D +++
Sbjct: 220 PHVAELALGGTAV-GTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAH 278
Query: 129 STCCLIVMHLSRISEEF-IIFMNPQFNF--LTLPESFLTGSSIMPQKKNP 175
+ L +I+ + + P+ +++PE+ GSSIMP K NP
Sbjct: 279 GALKGLAASLMKIANDVRWLASGPRCGIGEISIPENE-PGSSIMPGKVNP 327
>pdb|4HGV|A Chain A, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|B Chain B, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|C Chain C, Crystal Structure Of A Fumarate Hydratase
pdb|4HGV|D Chain D, Crystal Structure Of A Fumarate Hydratase
Length = 495
Score = 35.8 bits (81), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 46/180 (25%), Positives = 70/180 (38%), Gaps = 29/180 (16%)
Query: 17 IIELLLTMIKHLTDLSDKHAKT----IMPGFTHFQIAQPISLGHYLLAYASMFQRDINRL 72
+I LL +KHL ++ K I G TH Q A P++LG YA+ I
Sbjct: 188 VIHDLLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSGYAAQVASSI--- 244
Query: 73 IDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSE--------------NSLDSI 118
KR+ + G LA + L A + EK +E N +++
Sbjct: 245 ----KRIEXTLPGLCELAQGGTAVGTGLNAPVGFAEKVAEEIAAITGIGFTSAPNKFEAL 300
Query: 119 SDRDFVIEFISTCCLIVMHLSRISEEF-IIFMNPQFNF--LTLPESFLTGSSIMPQKKNP 175
+ D + L +I+ + + P+ L+LPE+ GSSI P K NP
Sbjct: 301 AAHDSXVFSHGAINATAAALFKIANDIRFLGSGPRSGLGELSLPEN-EPGSSIXPGKVNP 359
>pdb|1FUR|A Chain A, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
pdb|1FUR|B Chain B, Fumarase Mutant H188n With Bound Substrate L-Malate At
Putative Activator Site
Length = 467
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 44/177 (24%), Positives = 76/177 (42%), Gaps = 27/177 (15%)
Query: 17 IIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCR 76
+I L T+ + L + S A + G T+ Q A P++LG + + +M + ++ +
Sbjct: 160 LIPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSL 219
Query: 77 KRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVI-----EFISTC 131
V LG A+ GT + + ++ D L I+ FV E ++TC
Sbjct: 220 PHVAELALGGTAV-GTGLNTHPEYARRVAD-------ELAVITCAPFVTAPNKFEALATC 271
Query: 132 -CLIVMH--LSRISEEFIIFMN--------PQFNF--LTLPESFLTGSSIMPQKKNP 175
L+ H L ++ + N P+ +++PE+ GSSIMP K NP
Sbjct: 272 DALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENE-PGSSIMPGKVNP 327
>pdb|1JSW|A Chain A, Native L-Aspartate Ammonia Lyase
pdb|1JSW|B Chain B, Native L-Aspartate Ammonia Lyase
pdb|1JSW|C Chain C, Native L-Aspartate Ammonia Lyase
pdb|1JSW|D Chain D, Native L-Aspartate Ammonia Lyase
Length = 478
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/141 (23%), Positives = 60/141 (42%), Gaps = 11/141 (7%)
Query: 42 GFTHFQIAQPISLGHYLLAYASMFQ---RDINRLIDCRKRVNISPLGSAALAGTTHHINR 98
G T Q A P++LG A++ + + ++I R + VN+ T +
Sbjct: 188 GRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTPKEYSP 247
Query: 99 YLTAKLLDFEK----PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEF-IIFMNPQ- 152
KL + P+E+ +++ SD + + + +S+I + ++ P+
Sbjct: 248 LAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRA 307
Query: 153 -FNFLTLPESFLTGSSIMPQK 172
N + LPE GSSIMP K
Sbjct: 308 GLNEINLPE-LQAGSSIMPAK 327
>pdb|4FMU|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human Set
Domain- Containing Protein 2 Compound: Pr-Snf
pdb|4H12|A Chain A, The Crystal Structure Of Methyltransferase Domain Of Human
Set Domain- Containing Protein 2 In Complex With
S-Adenosyl-L-Homocysteine
Length = 278
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 39/86 (45%), Gaps = 10/86 (11%)
Query: 362 KKGVPFRTSHEIVGS--IIKYCNE--KHKTFKDL--SLAELKTFHSYI----SDDIIDIL 411
KKG R + ++ + +++YC E HK FK A K H Y +D+IID
Sbjct: 126 KKGWGLRAAKDLPSNTFVLEYCGEVLDHKEFKARVKEYARNKNIHYYFMALKNDEIIDAT 185
Query: 412 CIENSIKFKNHIGGTSPEQVKITVQG 437
N +F NH + E K TV G
Sbjct: 186 QKGNCSRFMNHSCEPNCETQKWTVNG 211
>pdb|1DOF|A Chain A, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|B Chain B, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|C Chain C, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
pdb|1DOF|D Chain D, The Crystal Structure Of Adenylosuccinate Lyase From
Pyrobaculum Aerophilum: Insights Into Thermal Stability
And Human Pathology
Length = 403
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 27/55 (49%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLG 55
+I T L R+ + + E + L ++ K+ M G TH Q A+PI+LG
Sbjct: 99 IIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLG 153
>pdb|3GZH|A Chain A, Crystal Structure Of Phosphate-Bound Adenylosuccinate
Lyase From E. Coli
Length = 482
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 43/201 (21%), Positives = 76/201 (37%), Gaps = 27/201 (13%)
Query: 15 DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLID 74
++I+ +I + DL+ ++ + TH Q A P ++G + A +R +L
Sbjct: 167 EVILPYWRQLIDGIKDLAVQYRDIPLLSRTHGQPATPSTIGKEMANVAYRMERQYRQL-- 224
Query: 75 CRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLD--------SISDRDFVIE 126
+V I + A+ HI Y F + SL I D++ E
Sbjct: 225 --NQVEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQIEPHDYIAE 282
Query: 127 FISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE------SFLTGSSIMPQKKNPDVKDL 180
C+ +R + I F + ++ L + GSS MP K NP D
Sbjct: 283 LFD--CV-----ARFNTILIDFDRDVWGYIALNHFKQKTIAGEIGSSTMPHKVNP--IDF 333
Query: 181 RQRAALAGTTHHINRYLTAKL 201
G ++ + ++L +KL
Sbjct: 334 ENSEGNLGLSNAVLQHLASKL 354
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.399
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,987,420
Number of Sequences: 62578
Number of extensions: 529362
Number of successful extensions: 1876
Number of sequences better than 100.0: 56
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1744
Number of HSP's gapped (non-prelim): 112
length of query: 455
length of database: 14,973,337
effective HSP length: 102
effective length of query: 353
effective length of database: 8,590,381
effective search space: 3032404493
effective search space used: 3032404493
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)