Query psy3416
Match_columns 455
No_of_seqs 172 out of 1711
Neff 7.2
Searched_HMMs 46136
Date Sat Aug 17 00:28:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3416.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3416hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0165 ArgH Argininosuccinate 100.0 4.9E-80 1.1E-84 629.1 34.9 346 1-443 113-458 (459)
2 PLN02646 argininosuccinate lya 100.0 7E-75 1.5E-79 609.0 35.4 347 1-444 126-472 (474)
3 KOG1316|consensus 100.0 2.1E-73 4.6E-78 549.3 30.4 345 1-443 116-460 (464)
4 PRK06705 argininosuccinate lya 100.0 5.9E-72 1.3E-76 590.6 35.2 353 1-450 119-479 (502)
5 PRK04833 argininosuccinate lya 100.0 1E-71 2.3E-76 583.7 36.1 343 1-440 112-454 (455)
6 TIGR00838 argH argininosuccina 100.0 2.8E-70 6.1E-75 574.4 35.9 345 1-442 110-454 (455)
7 PRK00855 argininosuccinate lya 100.0 6.6E-70 1.4E-74 571.8 35.7 345 1-442 114-458 (459)
8 cd01359 Argininosuccinate_lyas 100.0 2.1E-68 4.5E-73 558.0 35.8 343 1-441 90-434 (435)
9 PRK12308 bifunctional arginino 100.0 2E-68 4.3E-73 579.3 35.8 348 1-445 112-459 (614)
10 PRK02186 argininosuccinate lya 100.0 1.1E-64 2.4E-69 570.7 36.0 344 1-450 519-864 (887)
11 PRK07492 adenylosuccinate lyas 100.0 5.7E-63 1.2E-67 514.4 31.5 324 1-436 100-433 (435)
12 PRK08470 adenylosuccinate lyas 100.0 5.9E-63 1.3E-67 516.0 31.3 326 1-435 97-441 (442)
13 PRK07380 adenylosuccinate lyas 100.0 2.6E-62 5.7E-67 508.9 31.7 323 1-434 97-429 (431)
14 PRK08540 adenylosuccinate lyas 100.0 2.2E-61 4.7E-66 506.3 32.0 330 1-440 106-446 (449)
15 cd01597 pCLME prokaryotic 3-ca 100.0 2.9E-61 6.2E-66 504.3 32.0 325 1-436 102-436 (437)
16 PRK09053 3-carboxy-cis,cis-muc 100.0 6.9E-60 1.5E-64 495.1 30.9 326 1-438 111-447 (452)
17 PRK06390 adenylosuccinate lyas 100.0 1.1E-59 2.4E-64 493.2 31.9 333 1-444 105-448 (451)
18 TIGR00928 purB adenylosuccinat 100.0 1.1E-59 2.4E-64 491.8 28.6 322 1-433 100-434 (435)
19 PRK12273 aspA aspartate ammoni 100.0 4.3E-59 9.4E-64 489.8 30.5 306 1-419 146-464 (472)
20 cd01360 Adenylsuccinate_lyase_ 100.0 1.6E-58 3.5E-63 475.9 28.0 275 1-376 94-374 (387)
21 COG0015 PurB Adenylosuccinate 100.0 5.8E-58 1.3E-62 468.7 30.9 325 1-435 101-436 (438)
22 PRK06389 argininosuccinate lya 100.0 3.5E-58 7.6E-63 473.0 28.4 277 1-381 109-386 (434)
23 PRK13353 aspartate ammonia-lya 100.0 2.5E-57 5.5E-62 476.5 30.5 306 1-419 144-462 (473)
24 cd01595 Adenylsuccinate_lyase_ 100.0 8.4E-58 1.8E-62 470.3 25.9 274 1-376 92-375 (381)
25 cd01357 Aspartase Aspartase. T 100.0 5.2E-57 1.1E-61 471.9 30.1 299 1-412 139-450 (450)
26 cd03302 Adenylsuccinate_lyase_ 100.0 5.4E-57 1.2E-61 470.7 30.1 312 1-415 99-432 (436)
27 PRK00485 fumC fumarate hydrata 100.0 1.2E-56 2.6E-61 471.2 28.8 305 1-418 143-461 (464)
28 PRK12425 fumarate hydratase; P 100.0 1.1E-55 2.4E-60 462.3 29.7 305 1-418 141-459 (464)
29 TIGR00979 fumC_II fumarate hyd 100.0 4.7E-55 1E-59 457.4 29.6 304 1-417 140-457 (458)
30 PLN00134 fumarate hydratase; P 100.0 2E-54 4.4E-59 452.6 29.7 305 1-418 135-453 (458)
31 cd01362 Fumarase_classII Class 100.0 1.6E-54 3.5E-59 453.3 28.9 302 1-415 139-454 (455)
32 TIGR00839 aspA aspartate ammon 100.0 3.7E-54 8E-59 450.9 30.5 304 1-418 142-459 (468)
33 PRK14515 aspartate ammonia-lya 100.0 4.2E-54 9E-59 450.8 28.0 305 1-419 150-468 (479)
34 cd01596 Aspartase_like asparta 100.0 1.1E-53 2.4E-58 446.2 30.0 299 1-412 139-450 (450)
35 cd01334 Lyase_I Lyase class I 100.0 3E-52 6.5E-57 420.9 23.0 241 1-338 83-325 (325)
36 PRK09285 adenylosuccinate lyas 100.0 1.9E-51 4.1E-56 429.6 27.2 309 1-434 126-455 (456)
37 cd01598 PurB PurB_like adenylo 100.0 1.1E-48 2.4E-53 404.8 24.3 267 1-379 104-388 (425)
38 TIGR02426 protocat_pcaB 3-carb 100.0 5.1E-48 1.1E-52 391.2 22.8 229 1-335 102-338 (338)
39 PLN02848 adenylosuccinate lyas 100.0 2.6E-47 5.5E-52 398.0 26.3 310 1-433 129-457 (458)
40 PRK05975 3-carboxy-cis,cis-muc 100.0 2.4E-47 5.3E-52 387.4 22.0 230 1-337 111-347 (351)
41 PF00206 Lyase_1: Lyase; Inte 100.0 1.1E-43 2.3E-48 356.7 14.6 185 1-185 114-307 (312)
42 COG1027 AspA Aspartate ammonia 100.0 1.1E-41 2.3E-46 335.4 26.1 306 1-419 145-463 (471)
43 COG0114 FumC Fumarase [Energy 100.0 1.4E-40 3.1E-45 328.4 26.9 295 1-418 142-460 (462)
44 KOG2700|consensus 100.0 8.6E-38 1.9E-42 312.2 26.8 326 5-436 116-459 (481)
45 KOG1317|consensus 100.0 6.5E-32 1.4E-36 259.9 16.2 305 2-418 168-485 (487)
46 PRK08937 adenylosuccinate lyas 100.0 3.8E-31 8.1E-36 252.4 17.8 186 227-416 22-214 (216)
47 cd01594 Lyase_I_like Lyase cla 100.0 3E-28 6.5E-33 233.9 19.3 184 1-328 46-230 (231)
48 PF00206 Lyase_1: Lyase; Inte 99.8 3.9E-20 8.4E-25 186.1 13.5 204 34-287 100-312 (312)
49 PF14698 ASL_C2: Argininosucci 99.5 1.5E-13 3.3E-18 107.6 6.7 69 350-418 1-69 (70)
50 PRK08937 adenylosuccinate lyas 99.3 8.5E-12 1.8E-16 119.1 9.2 57 130-186 22-79 (216)
51 COG0015 PurB Adenylosuccinate 99.3 2.4E-11 5.2E-16 125.7 11.2 222 10-279 62-285 (438)
52 PF10397 ADSL_C: Adenylosuccin 99.2 2.2E-11 4.8E-16 98.3 6.7 80 348-435 1-81 (81)
53 TIGR00838 argH argininosuccina 99.1 7.1E-09 1.5E-13 109.7 22.8 167 35-251 97-263 (455)
54 PRK00855 argininosuccinate lya 99.1 3.3E-09 7.2E-14 112.3 16.7 178 26-253 92-269 (459)
55 cd01334 Lyase_I Lyase class I 99.0 1E-08 2.2E-13 104.0 18.0 183 21-253 55-240 (325)
56 KOG1316|consensus 99.0 2.9E-10 6.3E-15 111.7 6.1 63 121-183 236-298 (464)
57 PRK02186 argininosuccinate lya 99.0 7.9E-09 1.7E-13 117.8 16.8 179 21-249 491-670 (887)
58 cd01359 Argininosuccinate_lyas 99.0 1.5E-08 3.4E-13 106.6 17.2 183 24-256 66-248 (435)
59 COG0165 ArgH Argininosuccinate 99.0 3.2E-09 7E-14 109.9 10.9 47 137-183 249-295 (459)
60 PLN02646 argininosuccinate lya 98.9 1.8E-09 3.8E-14 114.5 8.0 53 127-186 259-311 (474)
61 PRK06705 argininosuccinate lya 98.9 2.8E-09 6E-14 113.8 7.6 56 124-186 249-304 (502)
62 PRK04833 argininosuccinate lya 98.9 4.9E-09 1.1E-13 110.8 7.8 54 126-186 244-297 (455)
63 PRK00485 fumC fumarate hydrata 98.8 5E-09 1.1E-13 111.0 7.6 132 121-252 153-308 (464)
64 PRK12308 bifunctional arginino 98.8 7E-09 1.5E-13 113.7 7.6 30 157-186 268-297 (614)
65 PRK06389 argininosuccinate lya 98.8 9.3E-09 2E-13 107.1 8.1 54 124-186 237-290 (434)
66 cd01595 Adenylsuccinate_lyase_ 98.8 2.8E-07 6E-12 95.5 18.1 188 21-263 64-257 (381)
67 cd01357 Aspartase Aspartase. T 98.8 5E-08 1.1E-12 102.9 12.7 164 39-253 130-304 (450)
68 PLN00134 fumarate hydratase; P 98.8 8.3E-08 1.8E-12 101.4 14.3 164 39-253 126-301 (458)
69 PRK12273 aspA aspartate ammoni 98.8 1.1E-07 2.4E-12 100.9 14.6 158 41-249 139-304 (472)
70 PRK12425 fumarate hydratase; P 98.8 1.7E-07 3.7E-12 99.2 15.6 162 39-251 132-303 (464)
71 COG1027 AspA Aspartate ammonia 98.7 2.9E-08 6.4E-13 99.6 8.4 141 123-264 157-320 (471)
72 cd03302 Adenylsuccinate_lyase_ 98.7 1.3E-07 2.8E-12 99.6 13.3 197 16-263 67-270 (436)
73 TIGR00839 aspA aspartate ammon 98.7 2.2E-07 4.7E-12 98.4 14.8 159 41-250 135-301 (468)
74 TIGR00979 fumC_II fumarate hyd 98.7 3.7E-07 8.1E-12 96.5 16.1 166 37-253 123-306 (458)
75 PRK06390 adenylosuccinate lyas 98.7 1.7E-07 3.7E-12 99.1 13.2 207 20-274 77-285 (451)
76 TIGR02426 protocat_pcaB 3-carb 98.7 6.9E-07 1.5E-11 91.1 16.9 181 22-252 75-257 (338)
77 PRK14515 aspartate ammonia-lya 98.7 3.2E-07 6.9E-12 97.3 14.3 163 38-251 140-311 (479)
78 cd01597 pCLME prokaryotic 3-ca 98.6 7.2E-07 1.6E-11 94.1 15.1 181 23-257 76-260 (437)
79 PRK13353 aspartate ammonia-lya 98.6 9.4E-07 2E-11 93.9 15.9 160 38-248 134-301 (473)
80 TIGR00928 purB adenylosuccinat 98.6 3.6E-07 7.7E-12 96.3 12.2 190 18-263 70-265 (435)
81 PRK07492 adenylosuccinate lyas 98.6 6.7E-07 1.5E-11 94.0 14.2 189 19-263 71-262 (435)
82 cd01360 Adenylsuccinate_lyase_ 98.6 1.8E-06 3.9E-11 89.6 16.8 189 21-263 67-256 (387)
83 KOG2700|consensus 98.5 8.1E-07 1.8E-11 90.6 12.1 123 167-307 203-328 (481)
84 cd01596 Aspartase_like asparta 98.5 2E-07 4.3E-12 98.4 8.0 128 120-252 148-303 (450)
85 cd01362 Fumarase_classII Class 98.5 2.3E-07 5E-12 98.0 7.6 128 121-253 149-305 (455)
86 PRK07380 adenylosuccinate lyas 98.5 2.4E-06 5.1E-11 89.9 14.8 192 16-263 65-259 (431)
87 PRK09053 3-carboxy-cis,cis-muc 98.5 9.4E-07 2E-11 93.6 11.1 170 34-253 97-267 (452)
88 PRK05975 3-carboxy-cis,cis-muc 98.5 2.6E-06 5.7E-11 87.2 13.9 201 22-276 84-286 (351)
89 PRK08540 adenylosuccinate lyas 98.4 3.2E-06 6.9E-11 89.5 13.0 195 18-263 75-271 (449)
90 PRK08470 adenylosuccinate lyas 98.4 1.1E-05 2.4E-10 85.1 16.1 189 20-263 69-259 (442)
91 cd01594 Lyase_I_like Lyase cla 98.3 1.5E-06 3.2E-11 83.4 8.0 27 162-188 161-187 (231)
92 COG0114 FumC Fumarase [Energy 98.1 2.8E-06 6E-11 85.9 5.7 152 124-276 156-330 (462)
93 PRK09285 adenylosuccinate lyas 98.0 9.2E-05 2E-09 78.4 13.3 175 21-247 93-280 (456)
94 cd01598 PurB PurB_like adenylo 97.9 0.001 2.2E-08 70.0 18.7 209 18-274 68-284 (425)
95 PLN02848 adenylosuccinate lyas 97.6 0.0024 5.2E-08 67.8 17.4 176 19-246 94-282 (458)
96 PF08328 ASL_C: Adenylosuccina 96.1 0.023 4.9E-07 48.4 7.0 74 304-379 4-80 (115)
97 PF10415 FumaraseC_C: Fumarase 95.9 0.011 2.4E-07 44.1 3.7 44 370-418 10-54 (55)
98 KOG1317|consensus 95.4 0.033 7.2E-07 55.4 6.2 170 121-291 178-370 (487)
99 COG3937 Uncharacterized conser 52.1 1.2E+02 0.0027 25.6 8.3 81 353-450 26-107 (108)
100 PF14748 P5CR_dimer: Pyrroline 30.7 1.3E+02 0.0028 25.2 5.4 29 351-379 22-50 (107)
101 PRK06928 pyrroline-5-carboxyla 23.0 4.2E+02 0.0091 25.9 8.4 45 335-379 158-210 (277)
102 PF12643 MazG-like: MazG-like 22.6 3E+02 0.0065 22.9 6.1 55 322-379 17-71 (98)
103 PF01978 TrmB: Sugar-specific 22.5 88 0.0019 23.5 2.7 39 338-379 9-48 (68)
104 PRK07634 pyrroline-5-carboxyla 21.4 2.9E+02 0.0063 26.1 6.8 31 351-381 183-213 (245)
105 CHL00180 rbcR LysR transcripti 21.4 2.6E+02 0.0055 27.4 6.6 54 29-83 40-93 (305)
106 TIGR02890 spore_yteA sporulati 21.0 6.3E+02 0.014 22.9 9.0 42 59-102 61-102 (159)
107 PF03861 ANTAR: ANTAR domain; 20.6 1.7E+02 0.0037 21.3 3.9 31 360-393 23-53 (56)
No 1
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=4.9e-80 Score=629.11 Aligned_cols=346 Identities=50% Similarity=0.823 Sum_probs=332.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
+|+|+++||+|+.+..+...+..|+++|.++|++|.+++||||||+|+|||+|||||+.+|.+.|.||.+||.++++|++
T Consensus 113 QVatd~rL~lr~~~~~l~~~i~~l~~aL~~~Ae~~~~~imPGyTHlQ~AQPvtf~H~llay~~~l~RD~~Rl~d~~~rvn 192 (459)
T COG0165 113 QVATDLRLWLRDKLLELLELIRILQKALLDLAEEHAETVMPGYTHLQRAQPVTFAHHLLAYAEMLARDIERLRDALKRVN 192 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCccCCcccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
.+|||+|+++|+++|+||+++|++|||+.+..|++|++++||+++|+.++++.
T Consensus 193 ~sPLGagAlaGt~~~iDR~~tA~lLGF~~~~~Nsldavs~Rdf~le~l~~~s~--------------------------- 245 (459)
T COG0165 193 VSPLGAGALAGTPFPIDRERTAELLGFDAVTRNSLDAVSDRDFILEFLSAAAL--------------------------- 245 (459)
T ss_pred cCCccccccCCCCCCCCHHHHHHHcCCchhhcCchhhhhhHHHHHHHHHHHHH---------------------------
Confidence 99999999999999999999999999999999988877777777776665554
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
++.||||+|+
T Consensus 246 ----------------------------------------------------------------------~~~~LSRlae 255 (459)
T COG0165 246 ----------------------------------------------------------------------IMVHLSRLAE 255 (459)
T ss_pred ----------------------------------------------------------------------HHHHHHHHHH
Confidence 4558888999
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDN 320 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 320 (455)
|+.+|+|.||+|+.||+.+.+||||||||||||.+|++|+++++++|...+++++++++|++||+|+|++++++|++++.
T Consensus 256 dlI~wss~EfgfI~l~D~~sTGSSIMPQKKNPD~~ELiRgk~grv~G~l~~ll~~~k~lPlaYnrDlQedke~lfds~~t 335 (459)
T COG0165 256 DLILWSSPEFGFIELPDEFSTGSSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKGLPLAYNRDLQEDKEPLFDSVDT 335 (459)
T ss_pred HHHHHccccCceEeCCcccccccccCCCCCCCcHHHHHHHhhhhhHHHHHHHHHHHhcCcccccHHHHhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhh
Q psy3416 321 IIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFH 400 (455)
Q Consensus 321 ~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~ 400 (455)
+..+|..+..++++|+||+++|++.+..|++++|++|++|+++|+|||+||++|+++|+.+.+.|+++.++..++.+.++
T Consensus 336 ~~~~l~~~~~mv~~l~vn~e~~~~a~~~gfs~aTdlAd~lv~kGvPFReAh~ivG~~v~~~~~~~~~l~~l~~~~~~~~~ 415 (459)
T COG0165 336 LEDSLRVLAGMVSGLTVNKERMREAAEAGFSTATDLADYLVRKGVPFREAHEIVGEAVRRAEERGKDLADLSLEELQSIS 415 (459)
T ss_pred HHHHHHHHHHHHccCeeCHHHHHHHhhcccchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCHHhccHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred cCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHHH
Q psy3416 401 SYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYIQ 443 (455)
Q Consensus 401 ~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~~ 443 (455)
+.+++++.++++|+.+|+.|..+||++|++|++.+++++..++
T Consensus 416 ~~~~~dv~~~l~~~~~v~~R~~~Ggtap~~v~~~i~~~~~~l~ 458 (459)
T COG0165 416 PLIDEDVYEVLTPEESVAKRNSEGGTAPEEVREAIARAKARLA 458 (459)
T ss_pred cccchHHHHHhchHHHHHHhhccCCCCHHHHHHHHHHHHHhhc
Confidence 8899999999999999999999999999999999999998764
No 2
>PLN02646 argininosuccinate lyase
Probab=100.00 E-value=7e-75 Score=609.02 Aligned_cols=347 Identities=41% Similarity=0.712 Sum_probs=327.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|++++||||||+|||||||||||+++|+++|.|+++||.+++++++
T Consensus 126 ~v~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~dtvmpGrTHlQ~AqPiT~G~~l~~~~~~l~rd~~RL~~~~~r~~ 205 (474)
T PLN02646 126 QVATDTRLWCRDAIDVIRKRIKTLQVALVELAEKNVDLVVPGYTHLQRAQPVLLSHWLLSHVEQLERDAGRLVDCRPRVN 205 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEecccCCccceeecHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
.+|||||+++|+++++|++++|++|||..|..|++||+++||+++|++++++.++.+++|||+|+++|+++|+|+
T Consensus 206 ~~pLGgga~aGt~~~idr~~~A~~LGf~~~~~n~~da~~~RD~~~e~~~~la~ia~~LsRia~Dl~l~ss~e~g~----- 280 (474)
T PLN02646 206 FCPLGSCALAGTGLPIDRFMTAKDLGFTAPMRNSIDAVSDRDFVLEFLFANSITAIHLSRLGEEWVLWASEEFGF----- 280 (474)
T ss_pred hcCCcchhhcCCCCCCCHHHHHHHhCCCCCCCChHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCe-----
Confidence 999999999999999999999999999999999999999999999999999988887776666666666555554
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
T Consensus 281 -------------------------------------------------------------------------------- 280 (474)
T PLN02646 281 -------------------------------------------------------------------------------- 280 (474)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDN 320 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 320 (455)
+.+|+.+++|||||||||||+++|++++++++++|...+++..++++|++||||+|++|.+++++++.
T Consensus 281 ------------v~~~d~~~~GSSiMPqKrNP~~~E~ir~~a~~v~G~~~~~~~~~~~~p~~~~rD~q~~~~~l~~~~~~ 348 (474)
T PLN02646 281 ------------VTPSDAVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTVLALCKGLPTAYNRDLQEDKEPLFDSVDT 348 (474)
T ss_pred ------------eeeCCCCCCCcCCCCCCCCCHHHHHHHHHHHHHHhhhHHHHHHhcCCchHhhcchhhHHHHHHHHHHH
Confidence 45566688999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhh
Q psy3416 321 IIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFH 400 (455)
Q Consensus 321 ~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~ 400 (455)
+..+|..+..++++|+||+++|++|+.+|++++|+++++|+++|+|||+||++|+++++.+.++|+++.++..++...+.
T Consensus 349 ~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~At~la~~Lv~~Gi~fr~Ah~iV~~~v~~a~~~g~~l~~l~~~~~~~~~ 428 (474)
T PLN02646 349 VSDMLEVATEFAQNITFNPERIKKSLPAGMLDATTLADYLVRKGVPFRETHHIVGAAVALAESKGCELSDLTLEDLKSIN 428 (474)
T ss_pred HHHHHHHHHHHHccCEECHHHHHHHHHcCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998877777
Q ss_pred cCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHHHH
Q psy3416 401 SYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYIQK 444 (455)
Q Consensus 401 ~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~~~ 444 (455)
+.+++++.+++||+.+|++|.++||++|+.|+++++++++.++.
T Consensus 429 ~~~~~~~~~~l~~~~~v~~r~~~Gg~~p~~v~~~~~~~~~~l~~ 472 (474)
T PLN02646 429 PVFEEDVYEVLGVENSVEKFDSYGSTGSRSVLEQLEKWRTKLEI 472 (474)
T ss_pred ccchHHHHHhCCHHHHHHHccCCCCCCHHHHHHHHHHHHHHhhc
Confidence 77888999999999999999999999999999999999888753
No 3
>KOG1316|consensus
Probab=100.00 E-value=2.1e-73 Score=549.29 Aligned_cols=345 Identities=41% Similarity=0.691 Sum_probs=330.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
+|.|.++||+|++++.++..+..|++++.++|+.+.+.+||||||+|.|||+.|.||+..++..|.||..||.+++.|++
T Consensus 116 QV~TDlRLw~r~~i~~~~~~l~~L~~~~v~rAe~~~dvlmpGYTHLQRAQpvrwsH~LlSha~~l~~D~~Rl~q~~~R~n 195 (464)
T KOG1316|consen 116 QVVTDLRLWLRDAIDTILGLLWNLIRVLVDRAEAELDVLMPGYTHLQRAQPVRWSHWLLSHAEQLTRDLGRLVQIRKRLN 195 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCeeccChhhhhhccCchhHHHHHHHHHHHHhHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
+.|+|+|+++|+++++||+.+++.|||+.+..|+++
T Consensus 196 ~~PLGagALAGnpl~iDR~~la~~LgF~~v~~NSm~-------------------------------------------- 231 (464)
T KOG1316|consen 196 QLPLGAGALAGNPLGIDREFLAEELGFEGVIMNSMD-------------------------------------------- 231 (464)
T ss_pred cCCcccchhcCCCCCccHHHHHHhcCCcccchhhhh--------------------------------------------
Confidence 999999999999999999999999999998766554
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
|+++||++++|+.|.++++.|++|+++
T Consensus 232 -----------------------------------------------------AvsDRDFVvef~fw~sm~m~HlSRlaE 258 (464)
T KOG1316|consen 232 -----------------------------------------------------AVSDRDFVVEFLFWASMVMTHLSRLAE 258 (464)
T ss_pred -----------------------------------------------------ccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 556666666667777788889999999
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDN 320 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 320 (455)
|+.+|++.||+|+.+.|++.+|||+||||+|||.+|++|++++++.|...++|++++++|+.||+|+|++|+++|+++++
T Consensus 259 dlIiy~t~EF~Fv~lSDaySTGSSlMPQKKNpDslELlRgksgrV~gdl~g~lmt~KG~PstYnkDlQeDKep~Fds~~t 338 (464)
T KOG1316|consen 259 DLIIYSTKEFGFVTLSDAYSTGSSLMPQKKNPDSLELLRGKSGRVFGDLTGLLMTLKGLPSTYNKDLQEDKEPLFDSSKT 338 (464)
T ss_pred HhheeeccccCceeeccccccCcccCCCCCCCCHHHHhccccceehhhhHHHHHHhcCCccccccchhhhhhHHHhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhh
Q psy3416 321 IIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFH 400 (455)
Q Consensus 321 ~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~ 400 (455)
+..+++..++++++++||+++|.+.++. -..||++|++||+||+|||++|+|++++|..|.+.|.++.++.+++.+.++
T Consensus 339 v~~~l~v~tgv~stltvn~e~m~~aLt~-dmlATdlA~YLVrKGvPFRqtHhisG~~V~~ae~rg~~l~~Lsledlqkls 417 (464)
T KOG1316|consen 339 VSDSLQVATGVISTLTVNQENMEKALTP-DMLATDLAYYLVRKGVPFRQTHHISGKAVRMAEERGVTLDKLSLEDLQKLS 417 (464)
T ss_pred HHHHHHHHHHHhhheeECHHHHhhccCc-hhhHhHHHHHHHHcCCCchhhhhhhHHHHHHHHHcCCCcccCCHHHHhhcC
Confidence 9999999999999999999999999877 469999999999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHHH
Q psy3416 401 SYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYIQ 443 (455)
Q Consensus 401 ~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~~ 443 (455)
+.|++|+...+|.+++|+++..+||++...|.++|..+++.+.
T Consensus 418 plF~eDv~~v~~ye~sVek~~a~GgTa~s~V~eQl~~~k~al~ 460 (464)
T KOG1316|consen 418 PLFEEDVFCVFNYENSVEKRCAIGGTAKSCVLEQLRQLKKALL 460 (464)
T ss_pred cccccchHHhhchhhhHHHhhccCCchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999987554
No 4
>PRK06705 argininosuccinate lyase; Provisional
Probab=100.00 E-value=5.9e-72 Score=590.61 Aligned_cols=353 Identities=28% Similarity=0.435 Sum_probs=324.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||||||||+++|+++|.|+++||.+++++++
T Consensus 119 ~v~Ta~~L~lr~~l~~l~~~l~~l~~~l~~~A~~~~~t~m~g~TH~Q~AqP~T~G~~l~~~~~~l~r~~~rL~~~~~r~~ 198 (502)
T PRK06705 119 MGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIMPAYTHTQPAQPTTFGHYTLAIYDTMQRDLERMKKTYKLLN 198 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEecccCCccceehHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
.+||||++++|+++|++++++|++|||..|..|+++++++||+++|++++++.++.+++|||+
T Consensus 199 ~~plGgaag~gt~~~~~r~~~a~~LGf~~~~~ns~~a~~~rD~~~e~~~~la~~~~~L~Ria~----------------- 261 (502)
T PRK06705 199 QSPMGAAALSTTSFPIKRERVADLLGFTNVIENSYDAVAGADYLLEVSSLLMVMMTNTSRWIH----------------- 261 (502)
T ss_pred cCCchhhhhccCCchHHHHHHHHHcCCCCCcCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHH-----------------
Confidence 999999999999999999999999999999889888788999999999888887776665555
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
T Consensus 262 -------------------------------------------------------------------------------- 261 (502)
T PRK06705 262 -------------------------------------------------------------------------------- 261 (502)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccc-cchHhHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQED-KLPLFDTVD 319 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-~~~l~~~~~ 319 (455)
|+++|++++++++++|+.+.+|||||||||||+.+|+++++++.+.|...+++..+++.|.+|++|+++. +..++++++
T Consensus 262 Dl~~~ss~e~g~iel~e~~~~gSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~l~~~~~~~~~~~~d~q~~~~~~~~~~~~ 341 (502)
T PRK06705 262 DFLLLATKEYDGITVARPYVQISSIMPQKRNPVSIEHARAITSSALGEAFTVFQMIHNTPFGDIVDTEDDLQPYLYKGIE 341 (502)
T ss_pred HHHHHcCCCCCeeeecCCCCCccCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhhhHhhhhhHHHHHHH
Confidence 5555555556666777778899999999999999999999999999999999999999999999998877 778999999
Q ss_pred HHHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhh
Q psy3416 320 NIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK-GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKT 398 (455)
Q Consensus 320 ~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~-g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~ 398 (455)
.+..++..+..++++|+||+++|++|+..|++++|++|++|+++ |+|||+||++|+++++.+.++|+++.++..++...
T Consensus 342 ~~~~~l~~~~~~l~~l~v~~~rm~~~~~~g~~~At~la~~Lv~~~Gl~fr~Ah~iV~~~v~~a~~~~~~l~~~~~~~~~~ 421 (502)
T PRK06705 342 KAIRVFCIMNAVIRTMKVEEDTLKRRSYKHAITITDFADVLTKNYGIPFRHAHHAASVIANMSLEQKKELHELCFKDVNI 421 (502)
T ss_pred HHHHHHHHHHHHHCcCEECHHHHHHHHhcCchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCHHHhhHHHHHh
Confidence 99999999999999999999999999989999999999999999 99999999999999999999999999988765431
Q ss_pred -----hhcCC-chHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHhchhh
Q psy3416 399 -----FHSYI-SDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYIQKITNKLE 450 (455)
Q Consensus 399 -----~~~~~-~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~~~~~~~~~ 450 (455)
+...+ ++++..++||+.++.+|.++||++|+.|++.+++++.++++..++++
T Consensus 422 ~~~~~~~~~~~~~~l~~~ldp~~~v~~r~~~Gg~~p~~v~~~~~~~~~~~~~~~~~~~ 479 (502)
T PRK06705 422 YLQEKFKIQLLEKEWEEIISPEAFIQKRNVYGGPSKKEMERMINNRKELFRKEEEVFE 479 (502)
T ss_pred hhhhhhhhcCCHHHHHHHCCHHHHHhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22334 45799999999999999999999999999999999999998887775
No 5
>PRK04833 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1e-71 Score=583.73 Aligned_cols=343 Identities=41% Similarity=0.694 Sum_probs=321.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
+++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||||||||+++|+++|.|+.+||.+++++++
T Consensus 112 ~~~Ta~rl~~r~~l~~l~~~l~~l~~~L~~~A~~~~~tvm~GrTH~Q~AqP~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 191 (455)
T PRK04833 112 QVATDLKLWCKDQVAELLTALRQLQSALVETAENNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLD 191 (455)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeccccCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
.|||||++++||++++|++++|++|||..|..|+++++++||+++++++.++.++.+++|||+|+++|+
T Consensus 192 ~~plGgaA~~GT~~~~dr~~~a~~LGf~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~s----------- 260 (455)
T PRK04833 192 VSPLGSGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASISMVHLSRFAEDLIFFN----------- 260 (455)
T ss_pred hcCCCccccccCCCCCCHHHHHHHhCCCCCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----------
Confidence 999999999899999999999999999999999899999999999999998888877766665555554
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
T Consensus 261 -------------------------------------------------------------------------------- 260 (455)
T PRK04833 261 -------------------------------------------------------------------------------- 260 (455)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDN 320 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 320 (455)
+++++++++|+.+++|||||||||||+.+|+++++++.+.|...+++.+++++|++||||+|+.+.+++++++.
T Consensus 261 ------s~e~g~~el~~~~~~gSSiMPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~~~ 334 (455)
T PRK04833 261 ------SGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMLMTLKGLPLAYNKDMQEDKEGLFDALDT 334 (455)
T ss_pred ------CCCCCceeeCCCCCCCcccCCCCCCChHHHHHHHHHHHHHhhHHHHHHHHhCChHHHhhhhhhhHHHHHHHHHH
Confidence 44556667777788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhh
Q psy3416 321 IIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFH 400 (455)
Q Consensus 321 ~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~ 400 (455)
+..++..+..++++|+||+++|++|+..|+++++++|+.|+++|+|||+||++|+++++.+.++|+++.++..+....+.
T Consensus 335 ~~~~l~~~~~~l~~l~v~~~rm~~~~~~g~~~a~~~a~~L~~~g~~~r~Ah~~v~~~~~~a~~~~~~~~~~~~~~~~~~~ 414 (455)
T PRK04833 335 WLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLAELQKFS 414 (455)
T ss_pred HHHHHHHHHHHHhhCeECHHHHHHHHHccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCChhhcCHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988776666
Q ss_pred cCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHH
Q psy3416 401 SYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRF 440 (455)
Q Consensus 401 ~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~ 440 (455)
..+++++..++||+.+|++|.++||++|+.|+++++++++
T Consensus 415 ~~~~~~~~~~l~p~~~v~~r~~~Gg~~~~~v~~~~~~~~~ 454 (455)
T PRK04833 415 SVIGDDVYPILSLQSCLDKRAAKGGVSPQQVAQAIAAAKA 454 (455)
T ss_pred ccchHHHHHhCCHHHHHHhccCCCCCCHHHHHHHHHHHhh
Confidence 6667789999999999999999999999999999988765
No 6
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=100.00 E-value=2.8e-70 Score=574.35 Aligned_cols=345 Identities=48% Similarity=0.786 Sum_probs=320.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
+++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 110 ~~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~m~grTH~Q~A~P~T~G~~~~~~~~~L~r~~~rL~~~~~~~~ 189 (455)
T TIGR00838 110 QVATDLRLYLRDHVLELAEALLDLQDALIELAEKHVETLMPGYTHLQRAQPITLAHHLLAYAEMLLRDYERLQDALKRVN 189 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeecccccccceeccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
.+||||++++|++++++++++++.|||..+..|+++|+++||++++++++++.++.+++|||+|+++|+++|+||+++
T Consensus 190 ~~plGg~a~aGt~~~~~r~~~a~~LG~~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~ss~e~gei~l-- 267 (455)
T TIGR00838 190 VSPLGSGALAGTGFPIDREYLAELLGFDAVTENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGEFGFVEL-- 267 (455)
T ss_pred cCCcchhcccCCCCCCCHHHHHHHcCCCCCcCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeeeC--
Confidence 999999999999999999999999999999889999999999999999999999998888888877777777766544
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
T Consensus 268 -------------------------------------------------------------------------------- 267 (455)
T TIGR00838 268 -------------------------------------------------------------------------------- 267 (455)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDN 320 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 320 (455)
|+.+++|||||||||||+.+|+++++++.+.|...+++.+.+++|++||+|.++.+..++++++.
T Consensus 268 ---------------p~~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~~~ 332 (455)
T TIGR00838 268 ---------------PDEFSSGSSIMPQKKNPDVAELIRGKTGRVQGNLTGMLMTLKALPLAYNRDLQEDKEPLFDALKT 332 (455)
T ss_pred ---------------CCCCCCccCCCCCCcCChHHHHHHHHHHHHhhhHHHHHHHHhcCChHhhhhhHhhHHHHHHHHHH
Confidence 44456777777777888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhh
Q psy3416 321 IIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFH 400 (455)
Q Consensus 321 ~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~ 400 (455)
+..+++.+..++++|+||+++|++|+..|++++|+++++|+++|+|||+||++|+++++++.++|+++.++..++...+.
T Consensus 333 ~~~al~~~~~~i~~l~v~~~rm~~~~~~~~~~at~la~~Lv~~g~~~r~Ah~~v~~~~~~a~~~g~~l~~~~~~~~~~~~ 412 (455)
T TIGR00838 333 VELSLEMATGMLDTITVNKERMEEAASAGFSNATELADYLVRKGVPFREAHHIVGELVATAIERGKGLEELTLEELQKFS 412 (455)
T ss_pred HHHHHHHHHHHHccCEECHHHHHHHHHcCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHhhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999887643355
Q ss_pred cCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHH
Q psy3416 401 SYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYI 442 (455)
Q Consensus 401 ~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~ 442 (455)
..+++++..++||+.++++|.++||++|+.|++.+++++..+
T Consensus 413 ~~~~~~l~~~ldp~~~v~~r~~~Gg~~~~~~~~~~~~~~~~~ 454 (455)
T TIGR00838 413 PEFDEDVYEALDPESSVEKRDAKGGTAPEEVLQAIAEAKARL 454 (455)
T ss_pred ccCHHHHHHHCCHHHHHHhccCCCCCCHHHHHHHHHHHHHhc
Confidence 566778999999999999999999999999999998887653
No 7
>PRK00855 argininosuccinate lyase; Provisional
Probab=100.00 E-value=6.6e-70 Score=571.81 Aligned_cols=345 Identities=56% Similarity=0.878 Sum_probs=323.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
+++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||||||||+++|+++|.|+.+||.+++++++
T Consensus 114 ~~~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P~T~G~~l~~~~~~L~r~~~rL~~~~~~~~ 193 (459)
T PRK00855 114 QVATDLRLYLRDEIDEIAELLLELQKALLDLAEEHADTIMPGYTHLQRAQPVTFGHHLLAYAEMLARDLERLRDARKRVN 193 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcCCccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
.+|+||++++|+++++++++++++|||..+..|+++|+++||++++++++++.++.+++|||+|+++|+++|+||+++|+
T Consensus 194 ~~plGgaag~gt~~~~~r~~~a~~LG~~~~~~n~~~a~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~ss~e~gei~~p~ 273 (459)
T PRK00855 194 RSPLGSAALAGTTFPIDRERTAELLGFDGVTENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELILWSSQEFGFVELPD 273 (459)
T ss_pred hcCcchhhhcCCCCCcCHHHHHHHcCCCCCCCCHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCeEeCCC
Confidence 99999999999999999999999999999999999999999999999999999999999888888888887777765554
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
T Consensus 274 -------------------------------------------------------------------------------- 273 (459)
T PRK00855 274 -------------------------------------------------------------------------------- 273 (459)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDN 320 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 320 (455)
.+.+|||||||||||+.+|+++++++.+.|...+++.+++++|++|+||++++|..++++++.
T Consensus 274 -----------------~~~~gSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~rD~~~~~~~l~~~~~~ 336 (459)
T PRK00855 274 -----------------AFSTGSSIMPQKKNPDVAELIRGKTGRVYGNLTGLLTVMKGLPLAYNRDLQEDKEPLFDAVDT 336 (459)
T ss_pred -----------------CCCCCcCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHhcCchHHhhhhhhhhHHHHHHHHHH
Confidence 345677777777888888888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhh
Q psy3416 321 IIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFH 400 (455)
Q Consensus 321 ~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~ 400 (455)
+..++..+..++++|+||+++|++|+..++++++++++.|+++|+|||+||++|+++++++.++|+++.++..+.+..+.
T Consensus 337 ~~~al~~~~~~l~~l~v~~~~m~~~l~~~~~~at~la~~Lv~~gi~~r~Ah~~v~~~~~~a~~~g~~~~~~~~~~~~~~~ 416 (459)
T PRK00855 337 LKLSLEAMAGMLETLTVNKERMREAAGKGFSTATDLADYLVRKGVPFREAHEIVGKAVREAEERGVDLADLSLEELQAFS 416 (459)
T ss_pred HHHHHHHHHHHHccCEECHHHHHHHHHcchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988766655
Q ss_pred cCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHH
Q psy3416 401 SYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYI 442 (455)
Q Consensus 401 ~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~ 442 (455)
..+++++.+++||+.+|++|.+.||++|+.+++.+++++.++
T Consensus 417 ~~~~~~~~~~~~~~~~v~~r~~~Gg~~~~~~~~~~~~~~~~~ 458 (459)
T PRK00855 417 PLITEDVYEVLTPEGSVAARNSIGGTAPEQVREQIARAKARL 458 (459)
T ss_pred ccchHHHHHHhChHHHHHhcCCCCCCCHHHHHHHHHHHHhhc
Confidence 556678999999999999999999999999999999887654
No 8
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=100.00 E-value=2.1e-68 Score=558.02 Aligned_cols=343 Identities=53% Similarity=0.842 Sum_probs=313.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 90 i~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 169 (435)
T cd01359 90 QVATDLRLYLRDALLELLELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFGHYLLAYAEMLERDLERLADAYKRVN 169 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEecCCCCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
.+||||++++|+++++++++++++|||..+..|.++++++||++++++++++.++++++|||+|+++|+++|+||+.+|+
T Consensus 170 ~~~lGgaag~gt~~~~~~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~~l~~~a~~l~ria~Dl~l~~~~e~gev~lpe 249 (435)
T cd01359 170 VSPLGAGALAGTTFPIDRERTAELLGFDGPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQEFGFVELPD 249 (435)
T ss_pred cCCcccccccCCCCCCCHHHHHHHcCCCCCccCHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCCC
Confidence 99999999999999999999999999999888877778999999999999999999999999988888888888776665
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
++
T Consensus 250 ~~------------------------------------------------------------------------------ 251 (435)
T cd01359 250 AY------------------------------------------------------------------------------ 251 (435)
T ss_pred CC------------------------------------------------------------------------------
Confidence 53
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDN 320 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 320 (455)
.+|||+|||||||+.+|++++.+..+.|...+++..+.++|.+|++|+++.|..+++++..
T Consensus 252 -------------------~~GSS~MP~KrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 312 (435)
T cd01359 252 -------------------STGSSIMPQKKNPDVLELIRGKAGRVIGALAGLLTTLKGLPLAYNKDLQEDKEPLFDAVDT 312 (435)
T ss_pred -------------------CCccccCCCCCCCcHHHHHHHHHHHHhhHHhHHHHHhcCCCCccchhHHHhhHHHHHHHHH
Confidence 4555566666666666677777788888888888888888999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHH-cCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhh
Q psy3416 321 IIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVK-KGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTF 399 (455)
Q Consensus 321 ~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~-~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~ 399 (455)
+..+++.+..++++|+||+++|++|+.++++++|++++.|++ +|+|||+||++|+++++++.++|+++.++..++. ++
T Consensus 313 ~~~al~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~l~~~l~~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~~~~~~~~-~~ 391 (435)
T cd01359 313 LIASLRLLTGVISTLTVNPERMREAAEAGFSTATDLADYLVREKGVPFREAHHIVGRAVRLAEEKGKDLSDLTLAEL-QA 391 (435)
T ss_pred HHHHHHHHHHHHhhCEECHHHHHHHHhcCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCChhhcCHHHH-Hh
Confidence 999999999999999999999999999999999999999999 6999999999999999999999999999988764 34
Q ss_pred hcCCc-hHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHH
Q psy3416 400 HSYIS-DDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFY 441 (455)
Q Consensus 400 ~~~~~-~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~ 441 (455)
...++ +++..++||++++.+|.++||++|+.|++++++++..
T Consensus 392 ~~~l~~~~l~~~ldp~~~~~~r~~~Gg~~~~~~~~~~~~~~~~ 434 (435)
T cd01359 392 ISPLFEEDVREALDPENSVERRTSYGGTAPAEVREQIARARAL 434 (435)
T ss_pred hcccCHHHHHHhCCHHHHHHhccCCCCCCHHHHHHHHHHHHhc
Confidence 44444 5799999999999999999999999999999988754
No 9
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=100.00 E-value=2e-68 Score=579.28 Aligned_cols=348 Identities=41% Similarity=0.690 Sum_probs=326.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||+|||||+++|+++|.|+.+||.+++++++
T Consensus 112 ~~~Ta~~L~~r~~~~~l~~~l~~l~~~l~~~a~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 191 (614)
T PRK12308 112 QVATDLKLWCRQQGQQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRAQPVTFAHWCLAYVEMFERDYSRLEDALTRLD 191 (614)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCcCCcccEEecHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
.+|||||+++|++++++++++++.|||..|..|+++|+++||++++++++++.++.+++|||+|+++|+++
T Consensus 192 ~~plGgga~agt~~~~~r~~~a~~LG~~~~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~ss~--------- 262 (614)
T PRK12308 192 TCPLGSGALAGTAYPIDREALAHNLGFRRATRNSLDSVSDRDHVMELMSVASISMLHLSRLAEDLIFYNSG--------- 262 (614)
T ss_pred hCCchhccccCCCCCCCHHHHHHHhCCCCCcCCHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------
Confidence 99999999999999999999999999999999989999999999999999998888777666666555554
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
T Consensus 263 -------------------------------------------------------------------------------- 262 (614)
T PRK12308 263 -------------------------------------------------------------------------------- 262 (614)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDN 320 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 320 (455)
+++++++|+.+.+|||||||||||+.+|+++++++.+.|...+++.+++++|++||||+|+.|..++++++.
T Consensus 263 --------e~g~~el~~~~~~gSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~~~ 334 (614)
T PRK12308 263 --------ESGFIELADTVTSGSSLMPQKKNPDALELIRGKTGRVYGALAGMMMTVKALPLAYNKDMQEDKEGLFDALDT 334 (614)
T ss_pred --------CcCCEEeCccCCCccccCcCccCCcHHHHHHHHHHHHhhHHHHHHHHHcCCchhhccchhhhHHHHHHHHHH
Confidence 445556677788999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhh
Q psy3416 321 IIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFH 400 (455)
Q Consensus 321 ~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~ 400 (455)
+..+++.+..++++|+||++||++|+.+|+++++++|+.|+++|+|||+||++|+++++.+.++|+++.+++.++.+.+.
T Consensus 335 ~~~~l~~~~~~l~~l~v~~~rm~~~~~~g~~~a~~la~~L~~~g~~~r~Ah~~v~~~v~~a~~~g~~l~~~~~~~~~~~~ 414 (614)
T PRK12308 335 WNDCMEMAALCFDGIKVNGERTLEAAKQGYANATELADYLVAKGIPFREAHHIVGVAVVGAIAKGCALEELSLEQLKEFS 414 (614)
T ss_pred HHHHHHHHHHHhCcCEECHHHHHHHHHcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766677
Q ss_pred cCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHH
Q psy3416 401 SYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYIQKI 445 (455)
Q Consensus 401 ~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~~~~ 445 (455)
..+++++.+++||+.++++|...||++|+.|+++++++++.+++.
T Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~v~~~~~~~~~~l~~~ 459 (614)
T PRK12308 415 DVIEDDVYQILTIESCLEKRCALGGVSPEQVAYAVEQADKRLAAR 459 (614)
T ss_pred hhhhHHHHHhCCHHHHHHhccCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 778888999999999999999999999999999999999888653
No 10
>PRK02186 argininosuccinate lyase; Provisional
Probab=100.00 E-value=1.1e-64 Score=570.67 Aligned_cols=344 Identities=24% Similarity=0.362 Sum_probs=312.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||||||||+++|+++|.|+.+||.+++++++
T Consensus 519 ~v~T~~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~m~g~TH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~r~~ 598 (887)
T PRK02186 519 INATTTKLHLREATSRAFDALWRLRRALVFKASANVDCALPIYSQYQPALPGSLGHYLLAVDGALARETHALFALFEHID 598 (887)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEeecCccCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
.+||||++++|++++++++++|++|||..|..|+++|+++||+++|++++++.++.+++|||+|+++|+++|+||+
T Consensus 599 ~~plG~aag~gt~~~~~~~~~a~~LGf~~~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~~~e~g~i---- 674 (887)
T PRK02186 599 VCPLGAGAGGGTTFPIDPEFVARLLGFEQPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWTTREFALV---- 674 (887)
T ss_pred cCCcccccccCCCCCCCHHHHHHHcCCCCCccCHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcE----
Confidence 9999999999999999999999999999999999999999999999999999998888877777777766666655
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
T Consensus 675 -------------------------------------------------------------------------------- 674 (887)
T PRK02186 675 -------------------------------------------------------------------------------- 674 (887)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccc-cccccchHhHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKD-LQEDKLPLFDTVD 319 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-~~~~~~~l~~~~~ 319 (455)
.+|+.+++|||+|||||||+.+|+++++++++.|...+++..++++|++|+.| +|++|..++++++
T Consensus 675 -------------~~~~~~~~gSSiMPqKrNP~~~E~ir~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 741 (887)
T PRK02186 675 -------------SLPDALTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFSNSFEAGSPMNGPIAQACA 741 (887)
T ss_pred -------------ECCCccccccCCCCCCCCCcHHHHHHHHHHHHhhHHHHHHHHHccCCcccccchhhhhHHHHHHHHH
Confidence 44555677888888888888888999999999999999999999999998888 5999999999999
Q ss_pred HHHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhh
Q psy3416 320 NIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK-GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKT 398 (455)
Q Consensus 320 ~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~-g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~ 398 (455)
.+..+++.+..++++|+||+++|++|+..++.+||++|++|+++ |+|||+||++|+++++.+.++|.++.+.+.+..
T Consensus 742 ~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~at~la~~L~~~~g~~fr~Ah~~v~~~v~~~~~~~~~~~~~~~~~~-- 819 (887)
T PRK02186 742 AIEDAAAVLVLLIDGLEADQARMRAHLEDGGVSATAVAESLVVRRSISFRSAHTQVGQAIRQSLDQGRSSADALAALD-- 819 (887)
T ss_pred HHHHHHHHHHHHHhhCEECHHHHHHHHhcCcchHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhcCCcccchHHHhh--
Confidence 99999999999999999999999999999999999999999996 999999999999999999999988877766432
Q ss_pred hhcCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHhchhh
Q psy3416 399 FHSYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYIQKITNKLE 450 (455)
Q Consensus 399 ~~~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~~~~~~~~~ 450 (455)
..+.++ .|+.+++.|.++||++|+.|+++++++++.+++..++++
T Consensus 820 --~~~~~~-----~~~~~~~~r~~~gg~~~~~v~~~~~~~~~~l~~~~~~~~ 864 (887)
T PRK02186 820 --PQFVSR-----APLEWARSHRFGGGPGAADLNAGLARACAALRDDEAVFR 864 (887)
T ss_pred --hhhccc-----hHHHHHHHhhCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122222 266788889999999999999999999999988777664
No 11
>PRK07492 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=5.7e-63 Score=514.36 Aligned_cols=324 Identities=20% Similarity=0.201 Sum_probs=286.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 100 i~dTa~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~TfG~~~a~~~~~l~r~~~rL~~~~~~~~ 179 (435)
T PRK07492 100 VLDTCLNVQLVRAADLLLADLDRVLAALKKRAFEHKDTPTIGRSHGIHAEPTTFGLKLARFYAEFARNRERLVAAREEIA 179 (435)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEeeccCCccceehhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcch---HHHHHhcCCCCCCCCchhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee
Q psy3416 81 ISPLGSAALAGTTHHINR---YLTAKLLDFEKPSENSLDS-ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 156 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~---~~~a~~LG~~~~~~n~~~~-~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el 156 (455)
.+||||++ ||..++++ +++++.|||+.+.. +| +++||++++++++++.++++++|||+|+++|+++|++|+
T Consensus 180 ~~~lgGAv--GT~~~~~~~~~~~~a~~LGl~~~~~---~~~v~~RD~~~e~~~~la~~~~~L~ria~Di~~l~~~e~~El 254 (435)
T PRK07492 180 TCAISGAV--GTFANIDPRVEEHVAKKLGLKPEPV---STQVIPRDRHAMFFATLGVIASSIERLAIEIRHLQRTEVLEA 254 (435)
T ss_pred hccCcccc--cCCccCChHHHHHHHHHhCCCCCCc---cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 99999874 88888887 78999999997543 55 599999999999999999999999999999999999886
Q ss_pred cccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q psy3416 157 TLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLS 236 (455)
Q Consensus 157 ~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~ 236 (455)
..+...
T Consensus 255 ~e~~~~-------------------------------------------------------------------------- 260 (435)
T PRK07492 255 EEFFSP-------------------------------------------------------------------------- 260 (435)
T ss_pred ccccCC--------------------------------------------------------------------------
Confidence 443210
Q ss_pred HHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccc---cccch
Q psy3416 237 RISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ---EDKLP 313 (455)
Q Consensus 237 ~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~ 313 (455)
.++|||+|||||||+.+|.++++++.+.|.. ...+.++|++|+||++ .+|..
T Consensus 261 ----------------------g~~GSS~MPhKrNP~~~E~i~~~a~~~~~~~---~~~~~~~~~~~eRD~~~~~~e~~~ 315 (435)
T PRK07492 261 ----------------------GQKGSSAMPHKRNPVLTENLTGLARLVRSYV---VPAMENVALWHERDISHSSVERMI 315 (435)
T ss_pred ----------------------CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHH---HHHHHhcchhhccCChHHHHhhhH
Confidence 1355566666666666666666667777763 3456678999999975 46778
Q ss_pred HhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhh
Q psy3416 314 LFDTVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDL 391 (455)
Q Consensus 314 l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~ 391 (455)
+++++..+..++..+..++++|+||+++|++|+. +|+++||++++.|+++|+||++||++|+++++++.++|++|.++
T Consensus 316 lp~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~i~ae~~~~~L~~~g~~r~~Ah~~V~~~~~~a~~~~~~l~e~ 395 (435)
T PRK07492 316 GPDATITLDFALNRLAGVIEKLVVYPENMLKNLNKFGGLVHSQRVLLALTQAGVSREDAYRLVQRNAMKVWEQGGDFLEE 395 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhcCChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999999985 79999999999999999999999999999999999999999999
Q ss_pred hHHHHhhhhcCCch-HHHHhcChhhhhhhhccCCCCcHHHHHHHHH
Q psy3416 392 SLAELKTFHSYISD-DIIDILCIENSIKFKNHIGGTSPEQVKITVQ 436 (455)
Q Consensus 392 ~~~~~~~~~~~~~~-~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~ 436 (455)
+.++ +++...+++ ++..++||+ .|.|.+++.++++++
T Consensus 396 l~~~-~~~~~~l~~~el~~~~dp~-------~ylg~~~~~~~~~~~ 433 (435)
T PRK07492 396 LKAD-PEVRAALSEEEIEELFDLG-------YHTKHVDTIFKRVFG 433 (435)
T ss_pred HhCC-HHhHhcCCHHHHHHHhCHH-------HHhcchHHHHHHHhh
Confidence 8865 567777764 699999998 599999999999863
No 12
>PRK08470 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=5.9e-63 Score=515.98 Aligned_cols=326 Identities=20% Similarity=0.199 Sum_probs=282.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 97 i~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~TfG~~~a~~~~~l~r~~~RL~~~~~~~~ 176 (442)
T PRK08470 97 CIDTAVALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRSHGIHGEPITFGLVLAIWYDEIKRHLKALEHTMEVIS 176 (442)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecccCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcc-hHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeccc
Q psy3416 81 ISPLGSAALAGTTHHIN-RYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP 159 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~-~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~ 159 (455)
.+||||+++++.+.+.+ ++++++.|||..+... .++++||+++|++++|+.++++++|||+|+++|+++|++|+..+
T Consensus 177 ~~~lgGAvGt~a~~~~~v~~~~a~~LGl~~~~~~--~~v~~RD~~~e~~~~La~~a~~L~ria~Di~~l~~~E~~ev~e~ 254 (442)
T PRK08470 177 VGKISGAMGNFAHAPLELEELVCEELGLKPAPVS--NQVIQRDRYARLASALALLASSCEKIAVAIRHLQRTEVYEAEEY 254 (442)
T ss_pred hhcCcchhcccccCChHHHHHHHHHcCCCCCCCC--CCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceeccc
Confidence 99999998776666654 6899999999965432 14699999999999999999999999999999999999886544
Q ss_pred CCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy3416 160 ESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRIS 239 (455)
Q Consensus 160 e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~ 239 (455)
...
T Consensus 255 ~~~----------------------------------------------------------------------------- 257 (442)
T PRK08470 255 FSK----------------------------------------------------------------------------- 257 (442)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 210
Q ss_pred HHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc---ccchHhH
Q psy3416 240 EEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE---DKLPLFD 316 (455)
Q Consensus 240 ~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~l~~ 316 (455)
.++|||+|||||||+.+|.++++++.+.|.. ...++++|++|+||+++ +|..+++
T Consensus 258 -------------------g~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~---~~~~~~~~~~~eRD~~~~~~e~~~l~~ 315 (442)
T PRK08470 258 -------------------GQKGSSAMPHKRNPVLSENITGLCRVIRSFA---TPALENVALWHERDISHSSVERFILPD 315 (442)
T ss_pred -------------------CCCCcCCCCCCcCcHHHHHHHHHHHHHHHHH---HHHHHhchHhhccCCchhHHHhhhHHH
Confidence 1245555555555555555566666666664 44567789999999865 3778999
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCHHHHHHHh--ccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHc---CCC----
Q psy3416 317 TVDNIIMCLVASGKLIEKATFNEQEMYETA--IKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEK---HKT---- 387 (455)
Q Consensus 317 ~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l--~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~---g~~---- 387 (455)
++..+..+++.+..++++|+||+++|++|+ +.|+++||++++.|+++|+|||+||++|+++++++.++ |++
T Consensus 316 ~~~~~~~~l~~~~~~l~~l~v~~~rm~~nl~~~~g~~~ae~l~~~L~~~G~~~~~Ah~~V~~~~~~a~~~~~~~~~~~~~ 395 (442)
T PRK08470 316 AFITTDFMLHRLNNVIENLVVYPENMMKNLNLTGGLVFSQRVLLELPKKGVSREDAYKIVQRNAMKVWEDLQQGKAAINE 395 (442)
T ss_pred HHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCCCcccc
Confidence 999999999999999999999999999998 56999999999999999999999999999999999999 999
Q ss_pred -----chhhhHHHHhhhhcCCch-HHHHhcChhhhhhhhccCCCCcHHHHHHHH
Q psy3416 388 -----FKDLSLAELKTFHSYISD-DIIDILCIENSIKFKNHIGGTSPEQVKITV 435 (455)
Q Consensus 388 -----~~e~~~~~~~~~~~~~~~-~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l 435 (455)
|.+.+.++ +.+...+++ ++..++||+ .|.|.+++.+++++
T Consensus 396 ~~~~~l~~~l~~~-~~~~~~~~~~~l~~~~dp~-------~~~g~~~~~~~~~~ 441 (442)
T PRK08470 396 KGESLFLQALLND-EDLRKSLSEEEIRACFDYS-------YYTKNVDAIFKRVF 441 (442)
T ss_pred ccHHHHHHHHhcC-HHhHhcCCHHHHHHHhCHH-------HHHhhHHHHHHHHh
Confidence 88887754 566666664 699999998 59999999998874
No 13
>PRK07380 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=2.6e-62 Score=508.86 Aligned_cols=323 Identities=20% Similarity=0.225 Sum_probs=285.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 97 i~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~TfG~~~a~~~~~l~r~~~RL~~~~~~~~ 176 (431)
T PRK07380 97 VLDTGLALQLVASLDLLLEELEDLIQAIRYQAREHRNTVMIGRSHGIHAEPITFGFKLAGWLAETLRNRERLVRLREDIA 176 (431)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeechhcCccceechHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchH---HHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceec
Q psy3416 81 ISPLGSAALAGTTHHINRY---LTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLT 157 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~---~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~ 157 (455)
.+|+||++ ||..+++++ ++++.|||..+..+ .++.+||++++++++++.++++++|||+|+++|+++|++|+.
T Consensus 177 ~~~l~GAv--Gt~~~~~~~~~~~~a~~LGl~~~~~~--~~v~~rd~~~e~~~~la~~a~~L~kia~Di~~l~~~~~~el~ 252 (431)
T PRK07380 177 VGQISGAV--GTYANTDPRVEAITCQKLGLKPDTAS--TQVISRDRHAEYVQTLALVGASLERFATEIRNLQRTDVLEVE 252 (431)
T ss_pred ccCcchhh--cCcccCChhHHHHHHHHcCCCCCCCC--CCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCceeec
Confidence 99997765 888888876 89999999987643 256999999999999999999999999999999999988864
Q ss_pred ccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q psy3416 158 LPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSR 237 (455)
Q Consensus 158 ~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~ 237 (455)
.+...
T Consensus 253 e~~~~--------------------------------------------------------------------------- 257 (431)
T PRK07380 253 EYFAK--------------------------------------------------------------------------- 257 (431)
T ss_pred ccCCC---------------------------------------------------------------------------
Confidence 32210
Q ss_pred HHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc---ccchH
Q psy3416 238 ISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE---DKLPL 314 (455)
Q Consensus 238 ~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~l 314 (455)
.++|||+|||||||+.+|.++++++.+.|...+ .+.++|.+|+||+++ +|..+
T Consensus 258 ---------------------g~~GSS~MPhKrNP~~~E~i~~~a~~~~g~~~~---~~~~~~~~~eRD~~~~~~e~~~l 313 (431)
T PRK07380 258 ---------------------GQKGSSAMPHKRNPIRSERLSGLARVLRSYAVA---ALENVALWHERDISHSSVERVML 313 (431)
T ss_pred ---------------------CCCCCcCCCCCCCCHHHHHHHHHHHHHHHHHHH---HHHhchhhhccCchHHHHHHHHH
Confidence 134566666666666666666777777777654 456789999999875 37799
Q ss_pred hHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHh--ccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH-cCCCchhh
Q psy3416 315 FDTVDNIIMCLVASGKLIEKATFNEQEMYETA--IKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNE-KHKTFKDL 391 (455)
Q Consensus 315 ~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l--~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~-~g~~~~e~ 391 (455)
++++..+..++..+..++++|+||+++|++|+ ++|++++|++++.|+++|+|||+||++|+++++++.+ +|++|.|+
T Consensus 314 ~~~~~~~~~~l~~~~~~l~~L~v~~~rm~~nl~~~~g~~~ae~~~~~Lv~~gl~r~~Ah~~V~~~~~~a~~~~~~~l~e~ 393 (431)
T PRK07380 314 PDCSILLHFMLREMTDLVKNLLVYPENMRRNMNIYGGVVFSQRVLLALVEKGMSREEAYRLVQKNAHTAWNTEGGNFRAN 393 (431)
T ss_pred HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 99999999999999999999999999999998 5899999999999999999999999999999999999 99999999
Q ss_pred hHHHHhhhhcCCch-HHHHhcChhhhhhhhccCCCCcHHHHHHH
Q psy3416 392 SLAELKTFHSYISD-DIIDILCIENSIKFKNHIGGTSPEQVKIT 434 (455)
Q Consensus 392 ~~~~~~~~~~~~~~-~l~~~ldp~~~v~~~~~~~G~a~~~v~~~ 434 (455)
+.++ +.+...+++ ++..++||+ .|.|.+++.++++
T Consensus 394 l~~~-~~~~~~l~~~~l~~~~dp~-------~ylg~~~~~~~~~ 429 (431)
T PRK07380 394 LEAD-PEVTQLLSAAELADCFDPQ-------LHLKNLDVIYQRL 429 (431)
T ss_pred HHcC-hHhhhcCCHHHHHHhhCHH-------HHhcchHHHHHHh
Confidence 8875 567677664 699999998 5999999998764
No 14
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=100.00 E-value=2.2e-61 Score=506.34 Aligned_cols=330 Identities=23% Similarity=0.275 Sum_probs=290.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 106 i~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 185 (449)
T PRK08540 106 IIDTATALQLKDSLEILEEKLKKLRGVLLKKAEEHKNTVCIGRTHGQHAVPTTYGMRFAIWASEIQRHLERLEQLKPRVC 185 (449)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhcCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccC-----CCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcce
Q psy3416 81 ISPLGSAALA-----GTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNF 155 (455)
Q Consensus 81 ~~~lGga~~~-----G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~e 155 (455)
.+||||++++ |++++++ ++++++|||+.+..|+ ++++||++++++++++.++++++|||+|+++|+++|++|
T Consensus 186 ~~~lGgavGt~~a~~~~~~~i~-~~~a~~LGl~~~~~~~--~~~~rd~~~e~~~~l~~~a~~l~kia~Dl~l~s~~e~ge 262 (449)
T PRK08540 186 VGQMTGAVGTQAAFGEKGIEIQ-KRVMEILGLKPVLISN--QVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQRTEIGE 262 (449)
T ss_pred eccccccccchhhCCCccHHHH-HHHHHHcCCCCCCCcC--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 9999996533 4445666 6899999999887652 569999999999999999999999999999999999988
Q ss_pred ecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q psy3416 156 LTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHL 235 (455)
Q Consensus 156 l~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l 235 (455)
+..+-
T Consensus 263 i~e~~--------------------------------------------------------------------------- 267 (449)
T PRK08540 263 VEEEF--------------------------------------------------------------------------- 267 (449)
T ss_pred hhccc---------------------------------------------------------------------------
Confidence 64321
Q ss_pred HHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccc---cc
Q psy3416 236 SRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQED---KL 312 (455)
Q Consensus 236 ~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~ 312 (455)
| ..++|||||||||||+.+|+++++++.+.|.... .+.++|++|+||+++. |.
T Consensus 268 --------------------~-~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~---~~~~~~~~~~rd~~~~~~e~~ 323 (449)
T PRK08540 268 --------------------G-KKQVGSSTMPHKRNPITSEQICGLARVVRSNVEP---ALLNNPLWDERDLTNSSCERI 323 (449)
T ss_pred --------------------C-CCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHH---HHhcchhhhccCCchhHHHHH
Confidence 1 1356677777777777777777777777776543 5578899999998875 77
Q ss_pred hHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchh
Q psy3416 313 PLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKD 390 (455)
Q Consensus 313 ~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e 390 (455)
.+++++..+..++..+..++++|+||+++|++|+. .+++++|++++.|+++|+|||+||++|+++++.+.++|+++.+
T Consensus 324 ~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~L~~~glg~~~Ah~~v~~l~~~a~~~g~~l~e 403 (449)
T PRK08540 324 IFPESCVLTDHILKLMIKVLEGLRFNPENIRRNLELTKGLIMAEAVMIELAKRGMGRQEAHELVRQAAMKAHEEGRHLKE 403 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 88999999999999999999999999999999985 8999999999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhcCCc-hHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHH
Q psy3416 391 LSLAELKTFHSYIS-DDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRF 440 (455)
Q Consensus 391 ~~~~~~~~~~~~~~-~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~ 440 (455)
++.++ +++...++ +++.+++||++ |+|++++.|+++++++++
T Consensus 404 ~~~~~-~~~~~~l~~~~l~~~ldp~~-------~~g~a~~~v~~~~~~~~~ 446 (449)
T PRK08540 404 VLLED-EEVMKYLTEEELEELLDPET-------YIGTAPEIVENVIEKLKE 446 (449)
T ss_pred HHHhC-hhhhccCCHHHHHHHcCHHH-------hcCchHHHHHHHHHHHHH
Confidence 98876 44544554 57999999984 899999999999987765
No 15
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=100.00 E-value=2.9e-61 Score=504.28 Aligned_cols=325 Identities=24% Similarity=0.265 Sum_probs=289.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|++++||||||+|||||||||||+++|+++|.|+++||.+++++++
T Consensus 102 ~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 181 (437)
T cd01597 102 IIDTALVLQLRDALDLLERDLDALLDALARLAATHRDTPMVGRTHLQHALPITFGLKVAVWLSELLRHRERLDELRPRVL 181 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeehhhcCccceechHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCc----chHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee
Q psy3416 81 ISPLGSAALAGTTHHI----NRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 156 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~----~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el 156 (455)
.+||||++++|++++. +++++++.|||+.+.. +|+++||++++++++++.++.+++|||+|+++|+++|+||+
T Consensus 182 ~~~lGga~Gtg~~~~~~~~~~~~~~a~~LGf~~~~~---~~~~~rd~~~e~~~~l~~~a~~l~rla~Dl~l~s~~e~gel 258 (437)
T cd01597 182 VVQFGGAAGTLASLGDQGLAVQEALAAELGLGVPAI---PWHTARDRIAELASFLALLTGTLGKIARDVYLLMQTEIGEV 258 (437)
T ss_pred hhccccccccccccCCcHHHHHHHHHHHcCCCCCCC---ccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccee
Confidence 9999999999998887 3789999999998765 47899999999999999999999999999999998888887
Q ss_pred cccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q psy3416 157 TLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLS 236 (455)
Q Consensus 157 ~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~ 236 (455)
.+|..
T Consensus 259 ~~~~~--------------------------------------------------------------------------- 263 (437)
T cd01597 259 AEPFA--------------------------------------------------------------------------- 263 (437)
T ss_pred ecccC---------------------------------------------------------------------------
Confidence 66541
Q ss_pred HHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccc---ccccch
Q psy3416 237 RISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL---QEDKLP 313 (455)
Q Consensus 237 ~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~ 313 (455)
.+++||||||||+||+.+|+++++++.+.|...+++..+ ..+|++|. +.+|..
T Consensus 264 ---------------------~~~~GSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~---~~~~erd~~~~~~~~~~ 319 (437)
T cd01597 264 ---------------------KGRGGSSTMPHKRNPVGCELIVALARRVPGLAALLLDAM---VQEHERDAGAWHAEWIA 319 (437)
T ss_pred ---------------------CCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHhc---hhhcccCCchhHHHHHH
Confidence 145677777777777777788888888888877766544 48899997 888999
Q ss_pred HhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhh
Q psy3416 314 LFDTVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDL 391 (455)
Q Consensus 314 l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~ 391 (455)
+++++..+..++..+..++++|+||+++|++++. .++.+|+.++..|++ |+|||+||++|+++++.+.++|+++.++
T Consensus 320 l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~ae~l~~~l~~-~i~~~~Ah~~v~~~~~~a~~~g~~~~~~ 398 (437)
T cd01597 320 LPEIFLLASGALEQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAP-KLGRQEAHDLVYEACMRAVEEGRPLREV 398 (437)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999999999999999999999984 578899999999998 6999999999999999999999999999
Q ss_pred hHHHHhhhhcCC-chHHHHhcChhhhhhhhccCCCCcHHHHHHHHH
Q psy3416 392 SLAELKTFHSYI-SDDIIDILCIENSIKFKNHIGGTSPEQVKITVQ 436 (455)
Q Consensus 392 ~~~~~~~~~~~~-~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~ 436 (455)
..++. ++...+ ++++.+++||++ ++|++|+.++++++
T Consensus 399 ~~~~~-~~~~~l~~~~l~~~ldp~~-------~v~~a~~~~~~~~~ 436 (437)
T cd01597 399 LLEDP-EVAAYLSDEELDALLDPAN-------YLGSAPALVDRVLA 436 (437)
T ss_pred HHhCh-hhhccCCHHHHHHhcCHHH-------HhcchHHHHHHHHh
Confidence 88753 344455 457999999995 77899999998863
No 16
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=6.9e-60 Score=495.09 Aligned_cols=326 Identities=20% Similarity=0.224 Sum_probs=287.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++|+|+||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 111 i~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~GrTH~Q~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~~ 190 (452)
T PRK09053 111 IIDTGLVLQLRDALDLLEPDLDRLCDALATLAARHRATPMVGRTWLQQALPVTLGLKFAGWLDALLRHRQRLAALRPRAL 190 (452)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeehhccCCcceechHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCC-----CcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcce
Q psy3416 81 ISPLGSAALAGT-----THHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNF 155 (455)
Q Consensus 81 ~~~lGga~~~G~-----~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~e 155 (455)
.+||||++++++ +.++ .+++++.|||+.|.. +|+++||++++++++|+.++++++|||+|+++|+++|+||
T Consensus 191 ~~~lGgavGt~~~~~~~~~~v-~~~~a~~LGl~~~~~---~~~~~rD~~~e~~~~la~la~~L~kia~Di~ll~~~e~ge 266 (452)
T PRK09053 191 VLQFGGAAGTLASLGEQALPV-AQALAAELQLALPAL---PWHTQRDRIAEFASALGLLAGTLGKIARDVSLLMQTEVGE 266 (452)
T ss_pred hccccchhhcccccccchHHH-HHHHHHHcCCCCCCC---CcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccch
Confidence 999999976533 2455 478999999998775 3789999999999999999999999999999999999999
Q ss_pred ecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q psy3416 156 LTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHL 235 (455)
Q Consensus 156 l~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l 235 (455)
+.+|..
T Consensus 267 v~e~~~-------------------------------------------------------------------------- 272 (452)
T PRK09053 267 VFEPAA-------------------------------------------------------------------------- 272 (452)
T ss_pred hhcccc--------------------------------------------------------------------------
Confidence 855431
Q ss_pred HHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccc---ccccc
Q psy3416 236 SRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL---QEDKL 312 (455)
Q Consensus 236 ~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~ 312 (455)
..+.|||+|||||||+.+|.++++++.+.|...+++. +++.+|++|. +.+|.
T Consensus 273 ----------------------~~~~GSSiMP~KrNPv~~E~i~~~a~~v~g~~~~~~~---~~~~~~erd~~~~~~~~~ 327 (452)
T PRK09053 273 ----------------------AGKGGSSTMPHKRNPVGCAAVLTAATRAPGLVATLFA---AMPQEHERALGGWHAEWD 327 (452)
T ss_pred ----------------------CCCCCcCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH---hChhhhcccCCccHHHHH
Confidence 1345666666666666666777777788887776544 5689999996 77899
Q ss_pred hHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHh--ccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchh
Q psy3416 313 PLFDTVDNIIMCLVASGKLIEKATFNEQEMYETA--IKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKD 390 (455)
Q Consensus 313 ~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l--~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e 390 (455)
.+++++..+..++..+..++++|+||+++|++|+ ..|+++||.++..|+.+ ++|++||++|+++++.+.++|+++.+
T Consensus 328 ~l~~~~~~~~~al~~~~~~l~~l~v~~erm~~~l~~s~~~~~ae~~~~~La~~-lgr~~Ah~iV~~~~~~a~~~g~~~~~ 406 (452)
T PRK09053 328 TLPELACLAAGALAQMAQIVEGLEVDAARMRANLDLTHGLILAEAVMLALADR-IGRLDAHHLVEQASKRAVAEGRHLRD 406 (452)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhcCCHHHHHHHHHHHHhc-cCHHHHHHHHHHHHHHHHHHCCCHHH
Confidence 9999999999999999999999999999999998 57999999999999887 88999999999999999999999999
Q ss_pred hhHHHHhhhhcCCc-hHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHH
Q psy3416 391 LSLAELKTFHSYIS-DDIIDILCIENSIKFKNHIGGTSPEQVKITVQGF 438 (455)
Q Consensus 391 ~~~~~~~~~~~~~~-~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~ 438 (455)
++.++ +.+...++ +++..++||++ |.|.+++.+++++++.
T Consensus 407 ~~~~~-~~~~~~l~~~~l~~~l~P~~-------~~g~~~~~~~~~~~~~ 447 (452)
T PRK09053 407 VLAED-PQVSAHLSPAALDRLLDPAH-------YLGQAHAWVDRVLAEH 447 (452)
T ss_pred HHHhC-hhhhccCCHHHHHHHcCHHH-------HhcchHHHHHHHHHHh
Confidence 98876 45555565 57999999984 8899999999997543
No 17
>PRK06390 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=1.1e-59 Score=493.16 Aligned_cols=333 Identities=20% Similarity=0.228 Sum_probs=276.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 105 i~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~r~~ 184 (451)
T PRK06390 105 INDTATALQIHDFVSIIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQHASPITFGLKFAVYLDEMSRHLDRLTEMGDRAF 184 (451)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCc----cccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee
Q psy3416 81 ISPLGS----AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 156 (455)
Q Consensus 81 ~~~lGg----a~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el 156 (455)
.+++|| ++..|+.++.+++++++.|||+.+..+ +++++||++++++++++.++++++|||+|+++|+++|++++
T Consensus 185 ~~~~~gavGt~a~~g~~~~~~~~~~a~~LGl~~~~~~--~~~~~rD~~~e~~~~l~~la~~l~kia~Di~l~ss~e~g~v 262 (451)
T PRK06390 185 AGKVLGPVGTGAALGKDALDIQNRVMEILGIYSEIGS--TQIVNRDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEV 262 (451)
T ss_pred hhccCChhcChhhCCCcHHHHHHHHHHHcCCCCCCCc--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 555555 444466566778899999999987543 46799999999999999999999999999999999999987
Q ss_pred cc--cCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q psy3416 157 TL--PESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMH 234 (455)
Q Consensus 157 ~~--~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~ 234 (455)
.+ ++.+++|||+||||+||+.+|.
T Consensus 263 ~E~~~~~~~~GSSiMP~KrNPv~~E~------------------------------------------------------ 288 (451)
T PRK06390 263 SEYFDEESQVGSSSMPSKVNPINSEN------------------------------------------------------ 288 (451)
T ss_pred hcccccCCCCCccCCCCCCCcHHHHH------------------------------------------------------
Confidence 53 2334555555555555555554
Q ss_pred HHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc---cc
Q psy3416 235 LSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE---DK 311 (455)
Q Consensus 235 l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~ 311 (455)
+++++..+.+... . .+...+.+|+||+++ +|
T Consensus 289 -------------------------------------------i~~~a~~~~~l~~--~-~~~~~~~~~erd~~~~~~e~ 322 (451)
T PRK06390 289 -------------------------------------------VVSLSRFIRSLII--P-EYEAGVTWHERDLTNSALER 322 (451)
T ss_pred -------------------------------------------HHHHHHHHHHhHH--H-HHHhhhHhhccCCcchHHHH
Confidence 4444422222221 1 122334569998765 45
Q ss_pred chHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc-cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchh
Q psy3416 312 LPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAI-KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKD 390 (455)
Q Consensus 312 ~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~-~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e 390 (455)
..++..+..+..++..+..++++|+||++||++|+. ++.++++++++.|++.|++||+||++|+++++++.++|+++.+
T Consensus 323 ~~~~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~se~la~~L~~~G~~~~~Ah~~v~~~~~~a~~~g~~l~~ 402 (451)
T PRK06390 323 FTIPYASILIDYVLYNMNDVLSHLIIKEDEIRRNLESDDSIMSESIVRALTLSGMPRQDAHEFVRRASMEARSNGKSLKS 402 (451)
T ss_pred hhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHhccchhhHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHH
Confidence 556788888999999999999999999999999986 5666688999999999999999999999999999999999999
Q ss_pred hhHHHHhhhhcCCch-HHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHHHH
Q psy3416 391 LSLAELKTFHSYISD-DIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYIQK 444 (455)
Q Consensus 391 ~~~~~~~~~~~~~~~-~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~~~ 444 (455)
++.++ .+.+.+++ ++..++||++ |.|++++.|+++++.++.+++.
T Consensus 403 ~~~~~--~~~~~l~~~~l~~~ldP~~-------~i~~a~~~v~~~~~~~~~~~~~ 448 (451)
T PRK06390 403 SLIEA--GILKYIDEKTLDRAMDPAN-------FIGQAPSICDNVVNNAERRMKD 448 (451)
T ss_pred HHHhC--hhhhcCCHHHHHHhcCHHH-------HhhhhHHHHHHHHHHHHHHhhc
Confidence 88764 44555665 5999999995 7789999999999998887764
No 18
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=100.00 E-value=1.1e-59 Score=491.82 Aligned_cols=322 Identities=24% Similarity=0.321 Sum_probs=282.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..+++.|.++|++|++++||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 100 ~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 179 (435)
T TIGR00928 100 IVDTALALLLRDALEIILPKLKQLIDRLKDLAVEYKDTVMLGRTHGQHAEPTTLGKKFALWADEMKRQLERLLQAKERIK 179 (435)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHhHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcch------HHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q psy3416 81 ISPLGSAALAGTTHHINR------YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFN 154 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~------~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~ 154 (455)
.+|+||+ .||++++++ ++++++|||+.|..+ . ++++||++++++++++.++.+++|||+|+++|+++|++
T Consensus 180 ~~~lgGa--~Gt~~~~~~~~~~~~~~~a~~LGl~~~~~~-~-~~~~rD~~~e~~~~l~~la~~L~ria~Dl~l~s~~~~~ 255 (435)
T TIGR00928 180 VGGISGA--VGTHAAAYPLVEEVEERVTEFLGLKPVPIS-T-QIEPRDRHAELLDALALLATTLEKFAVDIRLLQRTEHF 255 (435)
T ss_pred hhcccch--hhhHhhccccHHHHHHHHHHhcCCCCCCCC-c-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 9999986 488888887 899999999988744 3 67999999999999999999999999999999999888
Q ss_pred eecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q psy3416 155 FLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMH 234 (455)
Q Consensus 155 el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~ 234 (455)
|+..|...
T Consensus 256 el~~~~~~------------------------------------------------------------------------ 263 (435)
T TIGR00928 256 EVEEPFGK------------------------------------------------------------------------ 263 (435)
T ss_pred ceecccCC------------------------------------------------------------------------
Confidence 76444310
Q ss_pred HHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc---cc
Q psy3416 235 LSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE---DK 311 (455)
Q Consensus 235 l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~ 311 (455)
.++|||+|||||||+.+|+++++++.+.|....++. ++|.+|+||.++ .|
T Consensus 264 ------------------------~~~GSS~MP~K~NP~~~E~i~~~a~~~~g~~~~~~~---~~~~~~erd~~~~~~~~ 316 (435)
T TIGR00928 264 ------------------------GQVGSSAMPHKRNPIDFENVCGLARVIRSVLSPALE---NVPLWHERDLTDSSVER 316 (435)
T ss_pred ------------------------CCCCcCCCCcCcCcHHHHHHHHHHHHHHHHHHHHHH---HhhHHhccCChHHHHHH
Confidence 135666666777777777777777788887766554 559999999876 45
Q ss_pred chHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH-cCCCc
Q psy3416 312 LPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNE-KHKTF 388 (455)
Q Consensus 312 ~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~-~g~~~ 388 (455)
..+++++..+..+++.+..++++|+||+++|++|+. .++++++++|+.|+++|+||++||++|+++++.+.+ +|.++
T Consensus 317 ~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~a~~la~~L~~~g~g~~~Ah~~v~~~~~~a~~~~~~~l 396 (435)
T TIGR00928 317 IILPDSFILADIMLKTTLKVVKKLVVNPENILRNLELTLGLIASERVLIALVERGMGREEAYEIVRELAMGAAEVDEPDL 396 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHhHHHHHHHHHHhCCChhhHHHHHHHHHHHHHHcccccH
Confidence 579999999999999999999999999999999985 567789999999999999999999999999999999 99999
Q ss_pred hhhhHHHHhhhhcCCc-hHHHHhcChhhhhhhhccCCCCcHHHHHH
Q psy3416 389 KDLSLAELKTFHSYIS-DDIIDILCIENSIKFKNHIGGTSPEQVKI 433 (455)
Q Consensus 389 ~e~~~~~~~~~~~~~~-~~l~~~ldp~~~v~~~~~~~G~a~~~v~~ 433 (455)
.+++.++ +.+...++ +++..++||++ |.|.+++.|++
T Consensus 397 ~~~~~~~-~~~~~~l~~~~l~~~ldp~~-------~~~~a~~~~~~ 434 (435)
T TIGR00928 397 LEFLLAD-ERITKYLKEEELAELLDPET-------YIGNAREIVER 434 (435)
T ss_pred HHHHhhC-ccchhhcCHHHHHHcCCHHH-------HhChHHHHHHh
Confidence 9988865 33444444 57999999984 88999998876
No 19
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=4.3e-59 Score=489.77 Aligned_cols=306 Identities=23% Similarity=0.291 Sum_probs=278.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||||||||+++|+++|.|+++||.+++++++
T Consensus 146 ~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~dt~m~GrTH~Q~AqP~TfG~~~a~~~~~l~r~~~RL~~~~~~~~ 225 (472)
T PRK12273 146 AYPTAIRIALLLSLRKLLDALEQLQEAFEAKAKEFADILKMGRTQLQDAVPMTLGQEFGAYAVALAEDRKRLYRAAELLR 225 (472)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEEeecccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHH-------HHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Q psy3416 81 ISPLGSAALAGTTHHINRYL-------TAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM--- 149 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~-------~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~--- 149 (455)
.+||||+++ ||++++++++ +|+.|||.. +..|+++++++||+++|++++++.++++++|||+|+++|+
T Consensus 226 ~~plGg~Av-GT~~~i~~~~~~~v~~~~A~~LGf~~~~~~n~~da~~~rD~~~e~~~~la~la~~L~rlA~Di~llss~e 304 (472)
T PRK12273 226 EVNLGATAI-GTGLNAPPGYIELVVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRLAVKLSKICNDLRLLSSGP 304 (472)
T ss_pred hcCCCccce-eCCCCCChhHHHHHHHHHHHHcCCCcccCcCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 999999877 9999998754 699999995 6669999999999999999999999999998888888888
Q ss_pred cCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q psy3416 150 NPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229 (455)
Q Consensus 150 ~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~ 229 (455)
++|+||+.
T Consensus 305 ~~e~gev~------------------------------------------------------------------------ 312 (472)
T PRK12273 305 RAGLNEIN------------------------------------------------------------------------ 312 (472)
T ss_pred ccCceEEE------------------------------------------------------------------------
Confidence 44466654
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc
Q psy3416 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE 309 (455)
Q Consensus 230 ~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 309 (455)
+|. +++|||+|||||||+.+|+++++++++.|...+++.+++++|++||+|.++
T Consensus 313 -------------------------lp~-~~~GSSiMPqKrNP~~~E~ir~~a~~v~G~~~~~~~~~~~~~~~~~~~~~~ 366 (472)
T PRK12273 313 -------------------------LPA-VQAGSSIMPGKVNPVIPEVVNQVCFQVIGNDTTVTMAAEAGQLELNVMEPV 366 (472)
T ss_pred -------------------------CCC-CCCcCCCCCcccCcHHHHHHHHHHHHHhhhHHHHHHHHHcCCchhhhhhhh
Confidence 443 567888888888888888899999999999999999999999999999999
Q ss_pred ccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCc
Q psy3416 310 DKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTF 388 (455)
Q Consensus 310 ~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~ 388 (455)
.+..++++++.+..+++.+. .++++|+||++||++|+..++.++++|++.| +|+.++++++.|.++|+++
T Consensus 367 ~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~~~~t~LA~~L---------~~~~a~~lv~~a~~~g~~l 437 (472)
T PRK12273 367 IAYNLFESISILTNACRTLREKCIDGITANEERCREYVENSIGIVTALNPYI---------GYENAAEIAKEALETGKSV 437 (472)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCCchHHHHHHHH---------HHHHHHHHHHHHHHhCCCH
Confidence 99999999999999999999 5999999999999999999998999999998 6888888899999999999
Q ss_pred hhhhHHHHhhhhcCCc-hHHHHhcChhhhhhh
Q psy3416 389 KDLSLAELKTFHSYIS-DDIIDILCIENSIKF 419 (455)
Q Consensus 389 ~e~~~~~~~~~~~~~~-~~l~~~ldp~~~v~~ 419 (455)
.++..++ ..++ +++.+++||++++++
T Consensus 438 ~~~~~~~-----~~l~~~el~~~ldp~~~v~~ 464 (472)
T PRK12273 438 RELVLER-----GLLTEEELDDILSPENMTHP 464 (472)
T ss_pred HHHHhhc-----CCCCHHHHHHHcCHHHhCCC
Confidence 9998864 3454 579999999998864
No 20
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=1.6e-58 Score=475.89 Aligned_cols=275 Identities=26% Similarity=0.298 Sum_probs=246.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||||||||+++|+++|.|+.+||.+++++++
T Consensus 94 i~~ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~TfG~~l~~~~~~L~r~~~rL~~~~~~~~ 173 (387)
T cd01360 94 VVDTALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTHGIHAEPTTFGLKFALWYAEFKRHLERLKEARERIL 173 (387)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeehhhcCCcceeehHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcC-cchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeccc
Q psy3416 81 ISPLGSAALAGTTHH-INRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP 159 (455)
Q Consensus 81 ~~~lGga~~~G~~~~-~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~ 159 (455)
.+||||++++|++++ .++++++++|||..+..| .++++||+++|++++++.++++++|||+|+++|+++|++|+..|
T Consensus 174 ~~~lgga~Gt~~~~~~~~~~~~a~~LG~~~~~~~--~~~~~rD~~~e~~~~la~~~~~L~ria~Dl~~~s~~e~gel~e~ 251 (387)
T cd01360 174 VGKISGAVGTYANLGPEVEERVAEKLGLKPEPIS--TQVIQRDRHAEYLSTLALIASTLEKIATEIRHLQRTEVLEVEEP 251 (387)
T ss_pred hhccchHhhcCccCCHHHHHHHHHHcCCCCCCCC--CcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccceecC
Confidence 999999998888888 578999999999987665 35699999999999999999999999999999999999876443
Q ss_pred CCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy3416 160 ESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRIS 239 (455)
Q Consensus 160 e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~ 239 (455)
...
T Consensus 252 ~~~----------------------------------------------------------------------------- 254 (387)
T cd01360 252 FSK----------------------------------------------------------------------------- 254 (387)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 210
Q ss_pred HHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccc---cchHhH
Q psy3416 240 EEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQED---KLPLFD 316 (455)
Q Consensus 240 ~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l~~ 316 (455)
..+|||+|||||||+.+|+++++++.+.|... ..++++|++|+||+++. |..+++
T Consensus 255 -------------------~~~GSS~MPqKrNP~~~E~i~~~a~~~~g~~~---~~~~~~~~~~~rd~~~~~~~~~~l~~ 312 (387)
T cd01360 255 -------------------GQKGSSAMPHKRNPILSENICGLARVIRSNVI---PALENVALWHERDISHSSVERVILPD 312 (387)
T ss_pred -------------------CCCCcCCCCCCCCCHHHHHHHHHHHHHHHHHH---HHHhhhHHhcCCCcchhHHHHHHHHH
Confidence 12566666666666666677777777777764 35578899999999774 679999
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHH
Q psy3416 317 TVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGS 376 (455)
Q Consensus 317 ~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~ 376 (455)
++..+..++..+..++++|+||+++|++|+. +|+++||++++.|+++|+|||+||++|++
T Consensus 313 ~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~~~~~ae~la~~L~~~g~~~r~Ah~~V~~ 374 (387)
T cd01360 313 ATILLDYILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMSREEAYEIVQR 374 (387)
T ss_pred HHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 9999999999999999999999999999986 59999999999999999999999999999
No 21
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=100.00 E-value=5.8e-58 Score=468.67 Aligned_cols=325 Identities=25% Similarity=0.286 Sum_probs=282.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|++.|++|++++.+.++|..+++.|.++|.+|++|||+||||+|||+|||||++++.|++++.|+++||.++.+++.
T Consensus 101 I~Dta~~L~lk~a~~ii~~~l~~l~~~L~~~A~~~k~t~m~GRTHgq~A~PtT~G~k~A~w~~el~R~~~rL~~~~~~~~ 180 (438)
T COG0015 101 IIDTALALQLKEALDLILPDLKRLIEALAELALEHKDTPMLGRTHGQPAEPTTFGKKFANWLAELLRHLERLEEAEERII 180 (438)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecccccCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcC----cchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee
Q psy3416 81 ISPLGSAALAGTTHH----INRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 156 (455)
Q Consensus 81 ~~~lGga~~~G~~~~----~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el 156 (455)
.+++||+++....++ ..++++++.|||..+... .|+.+||+++|+.++|+.+++++.|||.|+++|+++|+.|+
T Consensus 181 ~g~i~Ga~Gt~Aa~~~~~~~ve~~v~e~LGL~~~p~s--tq~~~RD~~ae~~~~La~i~~sl~k~a~dIr~l~~~e~~Ev 258 (438)
T COG0015 181 VGKIGGAVGTLAALGDLGAEVEERVAEKLGLKPAPIS--TQVSPRDRIAEFFSALALLAGSLEKFARDIRLLQRTEVGEV 258 (438)
T ss_pred hhccccchhhHhhcCchhHHHHHHHHHHcCCCCCCCC--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999984332222 235789999999965543 39999999999999999999999999999999999999999
Q ss_pred cccCC-CCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q psy3416 157 TLPES-FLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHL 235 (455)
Q Consensus 157 ~~~e~-~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l 235 (455)
+.|.. .++|||+||||+||+.+|.+.+.+
T Consensus 259 ~E~f~~gq~GSSaMPHKrNPi~~E~~~gla-------------------------------------------------- 288 (438)
T COG0015 259 EEPFAKGQVGSSAMPHKRNPIDSENVTGLA-------------------------------------------------- 288 (438)
T ss_pred ccccCCCCCCCCCCCcccCcHHHHHHHHHH--------------------------------------------------
Confidence 88764 578999999999999998764322
Q ss_pred HHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccc---ccccc
Q psy3416 236 SRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL---QEDKL 312 (455)
Q Consensus 236 ~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~ 312 (455)
+.+.+... ..+.+++++++||+ +.+|-
T Consensus 289 -----------------------------------------------r~~r~~~~---~~~e~~~~whERdlt~ssver~ 318 (438)
T COG0015 289 -----------------------------------------------RVARALVS---TLLENLVLWHERDLTDSSVERV 318 (438)
T ss_pred -----------------------------------------------HHHHHHHH---HHHHHhHHHHhccccchHHHHH
Confidence 11111111 12334578999996 55688
Q ss_pred hHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHh--ccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchh
Q psy3416 313 PLFDTVDNIIMCLVASGKLIEKATFNEQEMYETA--IKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKD 390 (455)
Q Consensus 313 ~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l--~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e 390 (455)
.+++++..++.+|..+..++++|+||+++|++|+ ..|+++++.++..|+++|++|++||++|++.++.+.++++++.+
T Consensus 319 ~Lp~~~~~~~~aL~~~~~vl~~L~v~~~~m~~nL~~~~gli~se~v~~~l~~~g~~Re~a~elvr~~a~~~~~~~~~~~~ 398 (438)
T COG0015 319 ILPDAFIAADGALNRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMGREEAHELVREKAMKAWEQGKEFLE 398 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCeeCHHHHHHHHhhccchhhhHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhccchHH
Confidence 9999999999999999999999999999999997 68999999999999999999999999999999999999999977
Q ss_pred hhHHHHhhhhcCCch-HHHHhcChhhhhhhhccCCCCcHHHHHHHH
Q psy3416 391 LSLAELKTFHSYISD-DIIDILCIENSIKFKNHIGGTSPEQVKITV 435 (455)
Q Consensus 391 ~~~~~~~~~~~~~~~-~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l 435 (455)
+.+++ +++..++++ ++...+||. .|+|.+.+.+++++
T Consensus 399 ~~l~~-~~v~~~~~~~~~~~~~dp~-------~y~G~a~~i~~r~~ 436 (438)
T COG0015 399 LLLAD-ERVTKYLSEEELLELLDPA-------NYLGRADEIVERVV 436 (438)
T ss_pred Hhccc-hhhhccCcHHHHHHcCCHH-------HHhhHHHHHHHHHh
Confidence 77755 456677765 678899998 49999988888765
No 22
>PRK06389 argininosuccinate lyase; Provisional
Probab=100.00 E-value=3.5e-58 Score=473.02 Aligned_cols=277 Identities=26% Similarity=0.365 Sum_probs=248.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
+|+|+++|++|+.+..+...+..++++|.++ |.+|+||||||+|+|||+|||||+++|++.|.|+.+||.+++++++
T Consensus 109 qvat~~RL~~r~~~~~~~~~l~~l~~~l~~~---~~dtimpGyTHlQ~AqP~TfG~~l~a~a~~L~rd~~RL~~~~~r~~ 185 (434)
T PRK06389 109 QVHADLNLFIIDKIIEIEKILYEIIKVIPGF---NLKGRLPGYTHFRQAMPMTVNTYINYIKSILYHHINNLDSFLMDLR 185 (434)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---ccCceeccccccCcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999999999999999999999999965 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeccc
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISD-RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP 159 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~-Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~ 159 (455)
.+|||+|++.|+.++++++++|++|||+.+..|+.++..+ ++.+++++++++.++.+++|||+
T Consensus 186 ~~pLGaga~~Gt~~~idr~~~A~lLGf~~~~~n~~~a~~~~~~~~~e~~~~la~la~~LsRiA~---------------- 249 (434)
T PRK06389 186 EMPYGYGSGYGSPSSVKFNQMSELLGMEKNIKNPVYSSSLYIKTIENISYLISSLAVDLSRICQ---------------- 249 (434)
T ss_pred hcchhhhhhhcCCchhhHHHHHHHhCCCCCCCCCchhhhccchHHHHHHHHHHHHHHHHHHHHH----------------
Confidence 9999999989999999999999999999988887655444 44467777777776665555555
Q ss_pred CCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy3416 160 ESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRIS 239 (455)
Q Consensus 160 e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~ 239 (455)
T Consensus 250 -------------------------------------------------------------------------------- 249 (434)
T PRK06389 250 -------------------------------------------------------------------------------- 249 (434)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHH
Q psy3416 240 EEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVD 319 (455)
Q Consensus 240 ~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~ 319 (455)
|+++|+++ +++++|+.+++|||||||||||+.+|+++++++++.|...+++...+++|++|++|+|+.+.+++++++
T Consensus 250 -Dl~l~ss~--g~ielpd~~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~n~~~~y~~D~q~~~~~~~~~~~ 326 (434)
T PRK06389 250 -DIIIYYEN--GIITIPDEFTTGSSLMPNKRNPDYLELFQGIAAESISVLSFIAQSELNKTTGYHRDFQIVKDSTISFIN 326 (434)
T ss_pred -HHHHHcCC--CEEEecCCCCCCCCCCCCCcCcHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHH
Confidence 55555544 566788888999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q psy3416 320 NIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYC 381 (455)
Q Consensus 320 ~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a 381 (455)
.+..+|..+..++++++||+++ ++.+.++ .+||++|+.++++|+|||+||++|+++++.+
T Consensus 327 ~~~~~l~l~~~~i~~l~~~~~~-~~a~~~~-~~ATdlA~~lv~~GipFR~AH~~Vg~~V~~~ 386 (434)
T PRK06389 327 NFERILLGLPDLLYNIKFEITN-EKNIKNS-VYATYNAWLAFKNGMDWKSAYAYIGNKIREG 386 (434)
T ss_pred HHHHHHHHHHHHHHhCeECHHH-HhhccCC-CcHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999 4555555 4599999988888999999999999999853
No 23
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=2.5e-57 Score=476.53 Aligned_cols=306 Identities=20% Similarity=0.263 Sum_probs=276.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+|+|+|||||||+++|+++|.|+++||.+++++++
T Consensus 144 ~v~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~~~~~~im~GrTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 223 (473)
T PRK13353 144 VFPTAIRIAALNLLEGLLAAMGALQDVFEEKAAEFDHVIKMGRTQLQDAVPITLGQEFSAYARALKRDRKRIQQAREHLY 223 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccCccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHH-------HHHhcCCC-CCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q psy3416 81 ISPLGSAALAGTTHHINRYL-------TAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN-- 150 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~-------~a~~LG~~-~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~-- 150 (455)
.+||||+++ ||++++++.+ ++++|||+ .+..|+++++++||++++++++++.++.+++|||+|+++|++
T Consensus 224 ~~pLGg~Av-GT~~~~~~~~~~~~~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~la~la~~l~riA~Dl~llss~p 302 (473)
T PRK13353 224 EVNLGGTAV-GTGLNADPEYIERVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSGP 302 (473)
T ss_pred hhCCCCccc-cCCccCChhHHHHHHHHHHHHhCCCCccccchHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999876 9999998753 67899999 466799999999999999999999999999999888888873
Q ss_pred -CCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q psy3416 151 -PQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229 (455)
Q Consensus 151 -~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~ 229 (455)
+|+||+.
T Consensus 303 r~e~gev~------------------------------------------------------------------------ 310 (473)
T PRK13353 303 RTGLGEIN------------------------------------------------------------------------ 310 (473)
T ss_pred cCCceEEE------------------------------------------------------------------------
Confidence 3666654
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc
Q psy3416 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE 309 (455)
Q Consensus 230 ~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 309 (455)
+|+ +++|||||||||||+.+|+++++++++.|...+++.+++++|++||++.+.
T Consensus 311 -------------------------lp~-~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~~~~~~~~~ 364 (473)
T PRK13353 311 -------------------------LPA-VQPGSSIMPGKVNPVMPEVVNQIAFQVIGNDVTITLAAEAGQLELNVMEPV 364 (473)
T ss_pred -------------------------CCC-CCCCCCCCCCCcCChHHHHHHHHHHHHHhHHHHHHHHHHcCChhhhhhhhh
Confidence 455 567777888888888888889999999999999999999999999998888
Q ss_pred ccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCc
Q psy3416 310 DKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTF 388 (455)
Q Consensus 310 ~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~ 388 (455)
....++++++.+..++..+. .++++|+||+++|++|+..++.++++|++.| ||++|+++++.|.++|+++
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~~~l~gL~vn~erm~~~l~~~~~l~t~La~~L---------gh~~v~~~~~~a~~~g~~l 435 (473)
T PRK13353 365 IAFNLLESISILTNACRAFTDNCVKGIEANEERCKEYVEKSVGIATALNPHI---------GYEAAARIAKEAIATGRSV 435 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchHHHHHHHH---------HHHHHHHHHHHHHHhCCCH
Confidence 88899999999998888887 7999999999999999999998999999998 7999999999999999999
Q ss_pred hhhhHHHHhhhhcCC-chHHHHhcChhhhhhh
Q psy3416 389 KDLSLAELKTFHSYI-SDDIIDILCIENSIKF 419 (455)
Q Consensus 389 ~e~~~~~~~~~~~~~-~~~l~~~ldp~~~v~~ 419 (455)
.++..++ ..+ ++++.+++||++++++
T Consensus 436 ~e~~~~~-----~~~~~~el~~~ldp~~~v~~ 462 (473)
T PRK13353 436 RELALEN-----GLLSEEELDLILDPFRMTHP 462 (473)
T ss_pred HHHHhhc-----CCCCHHHHHHHcCHHHhcCC
Confidence 9998864 344 4579999999987763
No 24
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=100.00 E-value=8.4e-58 Score=470.31 Aligned_cols=274 Identities=26% Similarity=0.285 Sum_probs=248.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||||||||+++|+++|.|+++||.+++++++
T Consensus 92 i~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~dt~m~grTH~Q~A~P~T~G~~~~~~~~~L~r~~~rL~~~~~~~~ 171 (381)
T cd01595 92 INDTALALQLRDALDIILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTTFGKKFAVWAAELLRHLERLEEARERVL 171 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHhhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCc----CcchHHHHHhcCCCCCCCCchhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcce
Q psy3416 81 ISPLGSAALAGTTH----HINRYLTAKLLDFEKPSENSLDSIS-DRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNF 155 (455)
Q Consensus 81 ~~~lGga~~~G~~~----~~~~~~~a~~LG~~~~~~n~~~~~~-~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~e 155 (455)
.+|+||++++|+++ +.+++++|+.|||..+ .++|+. +||+++|++++++.++.+++|||+|+++|+++|+||
T Consensus 172 ~~~lGga~G~g~~~~~~~~~~~~~~a~~LGl~~~---~~~~~~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~s~e~ge 248 (381)
T cd01595 172 VGGISGAVGTHASLGPKGPEVEERVAEKLGLKVP---PITTQIEPRDRIAELLSALALIAGTLEKIATDIRLLQRTEIGE 248 (381)
T ss_pred hhhcccHhhhHhhcCCcHHHHHHHHHHHcCCCCC---CCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Confidence 99999998888777 7888999999999653 356766 999999999999999999999999999999998888
Q ss_pred ecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q psy3416 156 LTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHL 235 (455)
Q Consensus 156 l~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l 235 (455)
+.+|..
T Consensus 249 v~~~~~-------------------------------------------------------------------------- 254 (381)
T cd01595 249 VEEPFE-------------------------------------------------------------------------- 254 (381)
T ss_pred eecccc--------------------------------------------------------------------------
Confidence 765541
Q ss_pred HHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccc---cc
Q psy3416 236 SRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQED---KL 312 (455)
Q Consensus 236 ~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~ 312 (455)
.+++|||+|||||||+.+|.++++++.+.|...+++..+ |.+|+||+++. |.
T Consensus 255 ----------------------~~~~GSS~MPqK~NP~~~E~i~~~a~~~~g~~~~~~~~~---~~~~erd~~~~~~~~~ 309 (381)
T cd01595 255 ----------------------KGQVGSSTMPHKRNPIDSENIEGLARLVRALAAPALENL---VQWHERDLSDSSVERN 309 (381)
T ss_pred ----------------------CCCCCCccCCCcCCcHHHHHHHHHHHHHHHHHHHHHHhh---hHhhccCCcHHHHHHH
Confidence 135666777777777777777888888888888877765 89999998765 58
Q ss_pred hHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhcc--CHhHHHHHHHHHHHcCCChhHHHHHHHH
Q psy3416 313 PLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIK--GFSISTDVADYLVKKGVPFRTSHEIVGS 376 (455)
Q Consensus 313 ~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~--~~~~a~~la~~L~~~g~~~r~Ah~~v~~ 376 (455)
.+++++..+..+++.+..++++|+||+++|++|+.. |+++||.+++.|+++|+|||+||++|++
T Consensus 310 ~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~g~~~ae~~~~~L~~~g~g~~~Ah~~v~~ 375 (381)
T cd01595 310 ILPDAFLLLDAALSRLQGLLEGLVVNPERMRRNLDLTWGLILSEAVMMALAKKGLGRQEAYELVKE 375 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccCHHHHHHHHHHHHHhCCCHhHHHHHHHH
Confidence 999999999999999999999999999999999976 7899999999999999999999999998
No 25
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=100.00 E-value=5.2e-57 Score=471.86 Aligned_cols=299 Identities=23% Similarity=0.325 Sum_probs=267.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
+++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||||||||||+++|+++|.|+.+||.+++++++
T Consensus 139 ~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P~TfG~~~~~~~~~l~r~~~rL~~~~~~~~ 218 (450)
T cd01357 139 VYPTALRLALILLLRKLLDALAALQEAFQAKAREFADVLKMGRTQLQDAVPMTLGQEFGAYATALKRDRARIYKARERLR 218 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccCcccccchHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHH-------HHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Q psy3416 81 ISPLGSAALAGTTHHINRYL-------TAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM--- 149 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~-------~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~--- 149 (455)
.+||||+++ ||++++++++ ++++|||.. +..|+++++++||++++++++++.++++++|||+|+++|+
T Consensus 219 ~~pLGg~Av-Gt~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~riA~Di~l~ss~e 297 (450)
T cd01357 219 EVNLGGTAI-GTGINAPPGYIELVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGP 297 (450)
T ss_pred HhCCCCCce-eCCCCCChhHHHHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999776 9989998765 999999995 5668999999999999999999999999999999999998
Q ss_pred cCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q psy3416 150 NPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229 (455)
Q Consensus 150 ~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~ 229 (455)
++||||+.+|+
T Consensus 298 ~~~~gev~~p~--------------------------------------------------------------------- 308 (450)
T cd01357 298 RAGLGEINLPA--------------------------------------------------------------------- 308 (450)
T ss_pred cCCceeEECCC---------------------------------------------------------------------
Confidence 55677765542
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc
Q psy3416 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE 309 (455)
Q Consensus 230 ~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 309 (455)
+++|||+|||||||+.+|+++++++++.|...+++..++++|++||++.+.
T Consensus 309 -----------------------------~~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~~~~~~~~~ 359 (450)
T cd01357 309 -----------------------------VQPGSSIMPGKVNPVIPEVVNQVAFQVIGNDLTITMAAEAGQLELNVFEPV 359 (450)
T ss_pred -----------------------------CCCcCCCCCCCcCcHHHHHHHHHHHHHhhHHHHHHHHHhcCcchhhcchHH
Confidence 456777777777777788888888899999988878788999999999888
Q ss_pred ccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCc
Q psy3416 310 DKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTF 388 (455)
Q Consensus 310 ~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~ 388 (455)
.+..++++++.+..+++.+. .++++|+||++||++|+..++.++++++++| +|+.++++++++.++|+++
T Consensus 360 ~~~~~~~~~~~~~~~l~~~~~~~l~~l~v~~erm~~~l~~~~~~~t~La~~l---------g~~~a~~~~~~a~~~g~~l 430 (450)
T cd01357 360 IAYNLLESIDILTNAVRTLRERCIDGITANEERCREYVENSIGIVTALNPYI---------GYEAAAEIAKEALETGRSV 430 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchHHHHHHHH---------HHHHHHHHHHHHHHhCCCH
Confidence 89999999999999999995 9999999999999999999888899999998 6777778888999999999
Q ss_pred hhhhHHHHhhhhcCCch-HHHHhcC
Q psy3416 389 KDLSLAELKTFHSYISD-DIIDILC 412 (455)
Q Consensus 389 ~e~~~~~~~~~~~~~~~-~l~~~ld 412 (455)
.++..++ .++++ ++.+++|
T Consensus 431 ~e~~~~~-----~~l~~~el~~~~~ 450 (450)
T cd01357 431 RELVLEE-----GLLTEEELDEILS 450 (450)
T ss_pred HHHHHhc-----CCCCHHHHHHHhC
Confidence 9988863 45543 5666654
No 26
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=100.00 E-value=5.4e-57 Score=470.70 Aligned_cols=312 Identities=16% Similarity=0.162 Sum_probs=264.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 99 i~dta~~L~lr~a~~~l~~~L~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~P~TfG~~~a~~~~~L~r~~~RL~~~~~~~~ 178 (436)
T cd03302 99 VTDNTDLIQIRDALDLILPKLAAVIDRLAEFALEYKDLPTLGFTHYQPAQLTTVGKRACLWIQDLLMDLRNLERLRDDLR 178 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeeccccCCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccC----CCCcCcch-------HHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3416 81 ISPLGSAALA----GTTHHINR-------YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM 149 (455)
Q Consensus 81 ~~~lGga~~~----G~~~~~~~-------~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~ 149 (455)
.+++||++++ |+.++.++ +++++.|||..+..+ ..++.+||+++|++++++.++.+++|||+|+++|+
T Consensus 179 ~~~~~GavGt~a~~~~~~~~dr~~~~~v~~~~a~~LGl~~~~~~-~~~v~~rD~~~e~~~~la~~a~~L~riA~Dl~l~~ 257 (436)
T cd03302 179 FRGVKGTTGTQASFLDLFEGDHDKVEALDELVTKKAGFKKVYPV-TGQTYSRKVDIDVLNALSSLGATAHKIATDIRLLA 257 (436)
T ss_pred hhcCcChhhhhHHHHhcCCchHHHHHHHHHHHHHHcCCCCCCCc-hhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888887644 33455654 589999999987433 23569999999999999999999999999999999
Q ss_pred cCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q psy3416 150 NPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229 (455)
Q Consensus 150 ~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~ 229 (455)
+ ++|+..|...
T Consensus 258 s--~~el~e~~~~------------------------------------------------------------------- 268 (436)
T cd03302 258 N--LKEVEEPFEK------------------------------------------------------------------- 268 (436)
T ss_pred h--CceecccccC-------------------------------------------------------------------
Confidence 8 7776554311
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccc--
Q psy3416 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL-- 307 (455)
Q Consensus 230 ~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-- 307 (455)
.++|||+|||||||+.+|.++++++.+.|...+++... ...+++||+
T Consensus 269 -----------------------------g~~GSS~MPhKrNPv~~E~i~~~a~~~~g~~~~~~~~~--~~~~~Erd~~~ 317 (436)
T cd03302 269 -----------------------------GQIGSSAMPYKRNPMRSERCCSLARHLMNLASNAAQTA--STQWFERTLDD 317 (436)
T ss_pred -----------------------------CCCCcccCCCccCcHHHHHHHHHHHHHHhhHHHHHHHh--hccccccCCch
Confidence 13455555666666666666666777777776666433 345778885
Q ss_pred -ccccchHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhcc--CHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHc
Q psy3416 308 -QEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIK--GFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEK 384 (455)
Q Consensus 308 -~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~--~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~ 384 (455)
...|..+++++..+..++..+..++++|+||+++|++|+.. |++++|.+++.|+++|+|||+||++|+++++++.++
T Consensus 318 ~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~l~~~~g~~~se~~~~~L~~~g~~~~~Ah~~v~~~~~~~~~~ 397 (436)
T cd03302 318 SANRRIAIPEAFLAADAILITLQNISEGLVVYPKVIERHIRQELPFMATENIIMAAVKAGGDRQDAHERIRVLSHQAAAV 397 (436)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 45677899999999999999999999999999999999854 799999999999999999999999999999999999
Q ss_pred ------CCCchhhhHHHHhhhhcCCchHHHHhcChhh
Q psy3416 385 ------HKTFKDLSLAELKTFHSYISDDIIDILCIEN 415 (455)
Q Consensus 385 ------g~~~~e~~~~~~~~~~~~~~~~l~~~ldp~~ 415 (455)
|++|.|++.++ +++.. ..+++..++||+.
T Consensus 398 ~~~~~~~~~~~~~l~~~-~~~~~-~~~~l~~~~dp~~ 432 (436)
T cd03302 398 VKQEGGDNDLIERIKND-AYFKP-IWDELDALLDPKT 432 (436)
T ss_pred hhcccCCCCHHHHHhcC-CCcCC-CHHHHHHHhCHHh
Confidence 99999998864 55655 4457999999985
No 27
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=100.00 E-value=1.2e-56 Score=471.16 Aligned_cols=305 Identities=18% Similarity=0.231 Sum_probs=259.0
Q ss_pred ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHI-DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~-~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++|+++ ..+.+.|..++++|.++|++|++|+||||||+|+|||||||||+++|+++|.|+++||.++++++
T Consensus 143 ~v~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~PiTfG~~~~~~~~~l~R~~~RL~~~~~r~ 222 (464)
T PRK00485 143 TFPTAMHIAAVLAIVERLLPALEHLRDTLAAKAEEFADIVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAALPHL 222 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeecCcCceeeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999 89999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCcchH-------HHHHhcCCC-CCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Q psy3416 80 NISPLGSAALAGTTHHINRY-------LTAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM-- 149 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~~~~-------~~a~~LG~~-~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~-- 149 (455)
+.+||||+++ ||+++++++ ++|++|||+ .+..|.++++++||+++|++++++.++.+++|||+|+++|+
T Consensus 223 ~~~pLGg~Av-GT~~~~~~~~~~~v~~~~A~~LGl~~~~~~n~~da~~~rD~~~e~~~~la~la~~L~ria~Dl~l~ss~ 301 (464)
T PRK00485 223 YELALGGTAV-GTGLNAHPGFAERVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLASG 301 (464)
T ss_pred HHhccCCccc-cCCccCChhHHHHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9999999765 999999976 599999999 67788899999999999999999999999999998888888
Q ss_pred -cCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 150 -NPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 150 -~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
++||||+++|
T Consensus 302 ~~~e~gev~lp--------------------------------------------------------------------- 312 (464)
T PRK00485 302 PRCGLGEISLP--------------------------------------------------------------------- 312 (464)
T ss_pred ccCCCceEEcC---------------------------------------------------------------------
Confidence 3466666554
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccc
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ 308 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 308 (455)
+. ++|||+|||||||+++|+++++++.+.|...+++......|+.++.+..
T Consensus 313 ----------------------------~~-~~GSSiMPqKrNP~~~E~ir~~a~~v~g~~~~~~~~~~~~~~e~~~~~~ 363 (464)
T PRK00485 313 ----------------------------EN-EPGSSIMPGKVNPTQCEALTMVCAQVMGNDAAVTFAGSQGNFELNVFKP 363 (464)
T ss_pred ----------------------------CC-CCCCCCCCCCCCcHHHHHHHHHHHHHhhhHHHHHHHhccCcccccccCh
Confidence 32 3677777788888888888888899999998888666666554444443
Q ss_pred cccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCC
Q psy3416 309 EDKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKT 387 (455)
Q Consensus 309 ~~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~ 387 (455)
.....+++.++.+..++..+. .++++|+||+++|++|+..++..++++++ ++||++||+ +++++.++|.+
T Consensus 364 ~~~~~~~~~~~~l~~~~~~~~~~~l~~l~v~~erm~~~l~~~~~~~t~La~-----~lg~~~A~~----~~~~a~~~g~~ 434 (464)
T PRK00485 364 VIAYNFLQSIRLLADAMRSFADHCVVGIEPNRERIKELLERSLMLVTALNP-----HIGYDKAAK----IAKKAHKEGLT 434 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCCeeHHHhcc-----ccCHHHHHH----HHHHHHHcCCC
Confidence 333457777788888888877 99999999999999999888776666554 489999987 77788889999
Q ss_pred chhhhHHHHhhhhcCCc-hHHHHhcChhhhhh
Q psy3416 388 FKDLSLAELKTFHSYIS-DDIIDILCIENSIK 418 (455)
Q Consensus 388 ~~e~~~~~~~~~~~~~~-~~l~~~ldp~~~v~ 418 (455)
+.+++.+. ..++ +++.+++||++++.
T Consensus 435 l~~~~~~~-----~~l~~~~l~~~ldP~~~~~ 461 (464)
T PRK00485 435 LKEAALEL-----GYLTEEEFDRWVDPEKMTG 461 (464)
T ss_pred HHHHHHHc-----CCCCHHHHHHHcCHHHhcC
Confidence 99887762 4444 57999999996443
No 28
>PRK12425 fumarate hydratase; Provisional
Probab=100.00 E-value=1.1e-55 Score=462.35 Aligned_cols=305 Identities=18% Similarity=0.219 Sum_probs=260.6
Q ss_pred ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHI-DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~-~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
+++|+++|++|+++ ..+.+.|..++++|.++|++|++++||||||+|||||||||||+++|+++|.|+++||.++++++
T Consensus 141 ~~~Ta~~L~~r~~l~~~l~~~L~~l~~~L~~~A~~~~~tim~GrTHlQ~A~PiT~G~~~~a~~~~l~rd~~RL~~~~~r~ 220 (464)
T PRK12425 141 CFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSARHAKLVKTGRTHMMDATPITFGQELSAFVAQLDYAERAIRAALPAV 220 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccccccCccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999 59999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCcch-------HHHHHhcCCCCC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q psy3416 80 NISPLGSAALAGTTHHINR-------YLTAKLLDFEKP-SENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN- 150 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~~~-------~~~a~~LG~~~~-~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~- 150 (455)
+.+|+|||++ ||++++++ +.+++.|||+.+ ..|.+|++++||+++|++++++.++.+|+|||+|+++|++
T Consensus 221 ~~~plGggAv-GT~~~~~~~~~~~~~~~La~~LG~~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~llsS~ 299 (464)
T PRK12425 221 CELAQGGTAV-GTGLNAPHGFAEAIAAELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSG 299 (464)
T ss_pred HHhcCCCchh-cCcccCCccHHHHHHHHHHHHhCCCCcccccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999998 99999864 235788899985 6789999999999999999999999999988888888873
Q ss_pred --CCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 151 --PQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 151 --~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
.|++|++
T Consensus 300 p~~g~~ei~----------------------------------------------------------------------- 308 (464)
T PRK12425 300 PRAGLAEVR----------------------------------------------------------------------- 308 (464)
T ss_pred ccCCceEEE-----------------------------------------------------------------------
Confidence 3455554
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccc
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ 308 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 308 (455)
+|+ .++|||||||||||+++|++++++++++|.+.+++.++++-+..+|.|..
T Consensus 309 --------------------------lp~-~~~GSSiMPqK~NP~~~E~i~~~a~~v~G~~~~v~~~~~~~~~q~n~~~~ 361 (464)
T PRK12425 309 --------------------------LPA-NEPGSSIMPGKVNPTQCEALSMLACQVMGNDATIGFAASQGHLQLNVFKP 361 (464)
T ss_pred --------------------------CCC-CCCCCCCCCCCcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhhcch
Confidence 443 26788888888889999999999999999999999988865555555555
Q ss_pred cccchHhHHHHHHH-HHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCC
Q psy3416 309 EDKLPLFDTVDNII-MCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKT 387 (455)
Q Consensus 309 ~~~~~l~~~~~~~~-~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~ 387 (455)
.....++++++.+. .++..+..++++|+||+++|++|+..++++++.| .. ++||++|| +++++|.++|++
T Consensus 362 ~~~~~~l~s~~~l~~~~~~~~~~~i~~l~vn~erm~~~l~~~~~~at~L----~~-~ig~~~A~----~ia~~a~~~g~~ 432 (464)
T PRK12425 362 VIIHNLLQSIRLLADGCRNFQQHCVAGLEPDAEQMAAHLERGLMLVTAL----NP-HIGYDKAA----EIAKKAYAEGTT 432 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcccHHHHHh----hh-ccCHHHHH----HHHHHHHHhCCC
Confidence 55556888888887 5555555999999999999999999999877755 32 48999999 445778889999
Q ss_pred chhhhHHHHhhhhcCCc-hHHHHhcChhhhhh
Q psy3416 388 FKDLSLAELKTFHSYIS-DDIIDILCIENSIK 418 (455)
Q Consensus 388 ~~e~~~~~~~~~~~~~~-~~l~~~ldp~~~v~ 418 (455)
+.+++.+. ..++ +++..++||++++.
T Consensus 433 l~e~~~~~-----~~l~~~el~~~ldP~~~~~ 459 (464)
T PRK12425 433 LREAALAL-----GYLTDEQFDAWVRPENMLE 459 (464)
T ss_pred HHHHHHhc-----CCCCHHHHHHHcCHHHhcC
Confidence 99988762 4444 57999999998664
No 29
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=100.00 E-value=4.7e-55 Score=457.37 Aligned_cols=304 Identities=18% Similarity=0.202 Sum_probs=251.3
Q ss_pred ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHI-DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~-~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++|+++ ..+.+.|..++++|.++|++|++|+||||||+|||+|||||||+++|+++|.|+++||.++++++
T Consensus 140 iv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~P~TfG~~~~~~~~~l~r~~~RL~~~~~~~ 219 (458)
T TIGR00979 140 TFPTAMHIAAVLAIKNQLIPALENLKKTLDAKSKEFAHIVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIAYSLPHL 219 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeecccccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999 69999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCcchH-------HHHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Q psy3416 80 NISPLGSAALAGTTHHINRY-------LTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM-- 149 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~~~~-------~~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~-- 149 (455)
+.+||||+++ ||+++++++ ++++.|||+. +..|+++++++||++++++++|+.++.+++|||+|+++|+
T Consensus 220 ~~~~lGg~Av-GT~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~~~~~~rD~~~e~~~~La~la~~L~kia~Dl~llss~ 298 (458)
T TIGR00979 220 YELAIGGTAV-GTGLNTHPGFDEKVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSG 298 (458)
T ss_pred HHhcCCCChh-cCCccCChhHHHHHHHHHHHHhCCCCeecCcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999776 999999876 5999999997 5677777789999999999999999999999999999998
Q ss_pred -cCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 150 -NPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 150 -~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
++||||+.+|+
T Consensus 299 ~~~e~gev~~p~-------------------------------------------------------------------- 310 (458)
T TIGR00979 299 PRCGLGELFIPE-------------------------------------------------------------------- 310 (458)
T ss_pred ccCCceeEECCC--------------------------------------------------------------------
Confidence 55788776654
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccc
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ 308 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 308 (455)
.+.|||+|||||||+++|+++++++.+.|...+++.++.+.+..+|.+..
T Consensus 311 ------------------------------~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~~~~~ 360 (458)
T TIGR00979 311 ------------------------------NEPGSSIMPGKVNPTQCEALTMVCVQVMGNDATIGFAGSQGNFELNVFKP 360 (458)
T ss_pred ------------------------------CCCCCCCCCCCcCCHHHHHHHHHHHHHHhhHHHHHHHHHhccchhhhcch
Confidence 34555566666666666667777777778887777777655544444322
Q ss_pred cccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCC
Q psy3416 309 EDKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKT 387 (455)
Q Consensus 309 ~~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~ 387 (455)
.....++..+..+..++..+. .++++|+||++||++|+..++..++.|++ ++||++||+ +++++.++|++
T Consensus 361 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~erm~~nl~~~~~~~t~La~-----~lg~~~A~~----~~~~a~~~~~~ 431 (458)
T TIGR00979 361 VIIYNFLQSVRLLSDAMESFRDHCVVGIEPNKERIQQLLNNSLMLVTALNP-----HIGYDNAAK----IAKKAHKEGIT 431 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCccHHHHhhh-----ccCHHHHHH----HHHHHHHhCCC
Confidence 211236666777777777777 79999999999999999887776665554 489999987 77778889999
Q ss_pred chhhhHHHHhhhhcCCc-hHHHHhcChhhhh
Q psy3416 388 FKDLSLAELKTFHSYIS-DDIIDILCIENSI 417 (455)
Q Consensus 388 ~~e~~~~~~~~~~~~~~-~~l~~~ldp~~~v 417 (455)
+.+++.+. ..+. +++..++||+.++
T Consensus 432 ~~e~~~~~-----~~l~~~el~~~ldp~~~~ 457 (458)
T TIGR00979 432 LKEAALEL-----GLLSEEEFDEWVVPEQMV 457 (458)
T ss_pred HHHHHHHc-----CCCCHHHHHHHcCHHHhc
Confidence 99887752 3444 5699999999643
No 30
>PLN00134 fumarate hydratase; Provisional
Probab=100.00 E-value=2e-54 Score=452.58 Aligned_cols=305 Identities=17% Similarity=0.215 Sum_probs=250.2
Q ss_pred ChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTR-KHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr-~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++| +++..+.+.|..++++|.++|++|++|+||||||+|+|+|||||||+++|+++|.|+++||.++++++
T Consensus 135 iv~Ta~~L~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~ 214 (458)
T PLN00134 135 TFPTAMHIAAATEIHSRLIPALKELHESLRAKSFEFKDIVKIGRTHLQDAVPLTLGQEFSGYATQVKYGLNRVQCTLPRL 214 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999 55889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCcchH-------HHHHhcCCCCC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Q psy3416 80 NISPLGSAALAGTTHHINRY-------LTAKLLDFEKP-SENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM-- 149 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~~~~-------~~a~~LG~~~~-~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~-- 149 (455)
+.+||||+++ ||++++++. ++++.|||+.+ ..|.++++++||++++++++++.++.+++|||+|+++|+
T Consensus 215 ~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~llss~ 293 (458)
T PLN00134 215 YELAQGGTAV-GTGLNTKKGFDEKIAAAVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLGSG 293 (458)
T ss_pred HHhCCCCeee-cCCccCChhHHHHHHHHHHHHhCCCCCCCccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999776 899999986 49999999985 667889999999999999999999999999999999998
Q ss_pred -cCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 150 -NPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 150 -~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
++|++|+++|..
T Consensus 294 p~~e~gev~lp~~------------------------------------------------------------------- 306 (458)
T PLN00134 294 PRCGLGELNLPEN------------------------------------------------------------------- 306 (458)
T ss_pred ccCCcceEECCCC-------------------------------------------------------------------
Confidence 447777765542
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccc
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ 308 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 308 (455)
++|||+|||||||+++|+++++++++.|.+.+++...++.+..+|.+..
T Consensus 307 -------------------------------~~GSSiMP~KrNPv~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~~~~~ 355 (458)
T PLN00134 307 -------------------------------EPGSSIMPGKVNPTQCEALTMVCAQVMGNHVAITVGGSAGHFELNVFKP 355 (458)
T ss_pred -------------------------------CCCCCCCCCCcCCHHHHHHHHHHHHHHhHHHHHHHHHhcCCchhhccch
Confidence 3666667777777777777777888888887777554433333322100
Q ss_pred cccchHhHHHHHHHHHHHHH-HHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCC
Q psy3416 309 EDKLPLFDTVDNIIMCLVAS-GKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKT 387 (455)
Q Consensus 309 ~~~~~l~~~~~~~~~~l~~~-~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~ 387 (455)
...-.+++.+..+..++..+ ..++++|+||++||++|+..++.+.++|++ ++||++||+ +++++.++|++
T Consensus 356 ~i~~~~l~~~~~~~~~~~~~~~~~l~~l~vn~erm~~~l~~~~~l~~~La~-----~ig~~~A~~----~~~~a~~~g~~ 426 (458)
T PLN00134 356 LIAYNLLHSIRLLGDASASFRKNCVRGIEANRERISKLLHESLMLVTALNP-----KIGYDKAAA----VAKKAHKEGTT 426 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccchHHHhhh-----ccCHHHHHH----HHHHHHHhCCC
Confidence 00014556666666676666 599999999999999999887777766555 479999987 77788889999
Q ss_pred chhhhHHHHhhhhcCCc-hHHHHhcChhhhhh
Q psy3416 388 FKDLSLAELKTFHSYIS-DDIIDILCIENSIK 418 (455)
Q Consensus 388 ~~e~~~~~~~~~~~~~~-~~l~~~ldp~~~v~ 418 (455)
+.+++.+. ..++ +++.+++||++++.
T Consensus 427 l~e~~~~~-----~~l~~~el~~~ldP~~~~~ 453 (458)
T PLN00134 427 LKEAALKL-----GVLTAEEFDELVVPEKMTG 453 (458)
T ss_pred HHHHHHhc-----CCCCHHHHHHHcCHHHhcC
Confidence 99988762 4444 57999999997654
No 31
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=1.6e-54 Score=453.29 Aligned_cols=302 Identities=20% Similarity=0.248 Sum_probs=257.6
Q ss_pred ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHID-IIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++|+++. .+.+.|..++++|.++|++|++|+||||||+|+|||||||||+++|+++|.|+++||.++++++
T Consensus 139 iv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~TfG~~~~~~~~~l~r~~~rL~~~~~r~ 218 (455)
T cd01362 139 TFPTAMHIAAALALQERLLPALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARIEAALPRL 218 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCCCCeeecHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 589999999999995 5999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCcchH-------HHHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q psy3416 80 NISPLGSAALAGTTHHINRY-------LTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN- 150 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~~~~-------~~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~- 150 (455)
+.+||||+++ |+++++++. ++|++|||.. +..|.+||+++||++++++++++.++++++|||+|+++|++
T Consensus 219 ~~~~lGg~A~-Gt~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~l~ria~Dl~~~~s~ 297 (455)
T cd01362 219 YELALGGTAV-GTGLNAHPGFAEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSG 297 (455)
T ss_pred hhcCcCCeec-cCCccCChhHHHHHHHHHHHHhCCCCccCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 9999999665 898888874 7899999994 66788899999999999999999999999999999999883
Q ss_pred --CCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 151 --PQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 151 --~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
+||||+.+|+
T Consensus 298 ~~~e~gev~~~~-------------------------------------------------------------------- 309 (455)
T cd01362 298 PRCGLGELSLPE-------------------------------------------------------------------- 309 (455)
T ss_pred ccCCCceEECCC--------------------------------------------------------------------
Confidence 4677765543
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccc
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ 308 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 308 (455)
.++|||+|||||||+.+|+++++++.+.|...+++..+.+.+..+|.|.+
T Consensus 310 ------------------------------~~~GSS~MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~~~~~~~~ 359 (455)
T cd01362 310 ------------------------------NEPGSSIMPGKVNPTQCEALTMVAAQVMGNDAAITIAGSSGNFELNVFKP 359 (455)
T ss_pred ------------------------------CCCCCCCCCCCCCcHHHHHHHHHHHHHhhhHHHHHHHHhcCchhhhhcch
Confidence 34566666666677777777777788888888888888777878887777
Q ss_pred cccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCC
Q psy3416 309 EDKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKT 387 (455)
Q Consensus 309 ~~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~ 387 (455)
+....++..++.+..++..+. .++++|+||++||++|+..++.+++++++ |+||++||++ ++++.++|.+
T Consensus 360 ~~~~~~l~~~~~~~~~~~~~~~~~l~~L~v~~~rm~~~l~~~~~~~~~La~-----~ig~~~A~~l----~~~a~~~~~~ 430 (455)
T cd01362 360 VIIYNLLQSIRLLADACRSFADKCVAGIEPNRERIAELLERSLMLVTALNP-----HIGYDKAAKI----AKKAHKEGLT 430 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcchhHHHhcc-----ccCHHHHHHH----HHHHHHcCCC
Confidence 666667777777777777764 99999999999999999887777665554 5999999887 6777889999
Q ss_pred chhhhHHHHhhhhcCCc-hHHHHhcChhh
Q psy3416 388 FKDLSLAELKTFHSYIS-DDIIDILCIEN 415 (455)
Q Consensus 388 ~~e~~~~~~~~~~~~~~-~~l~~~ldp~~ 415 (455)
+.+++.++ ..+. +++..++||++
T Consensus 431 l~~~~~~~-----~~~~~~el~~~~dp~~ 454 (455)
T cd01362 431 LKEAALEL-----GYLTEEEFDRLVDPEK 454 (455)
T ss_pred HHHHHHhc-----CCCCHHHHHHhcCccc
Confidence 99988764 4444 56999999974
No 32
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=100.00 E-value=3.7e-54 Score=450.92 Aligned_cols=304 Identities=19% Similarity=0.305 Sum_probs=257.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|+|||||||||+++|+++|.|+++||.+++++++
T Consensus 142 ~v~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~TfG~~~~~~~~~l~r~~~RL~~~~~~~~ 221 (468)
T TIGR00839 142 AYPTGFRIAVYSSLIKLVDAINQLRDGFEQKAKEFADILKMGRTQLQDAVPMTLGQEFEAFSILLEEEVKNIKRTAELLL 221 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCccCccchHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHH-------HHhcCCCCC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q psy3416 81 ISPLGSAALAGTTHHINRYLT-------AKLLDFEKP-SENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN-- 150 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~-------a~~LG~~~~-~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~-- 150 (455)
.+||||+++ ||++++++++. +++|||+.+ ..|+++++++||+++|++++++.++.+++|||+|+++|++
T Consensus 222 ~~~lGg~Av-GT~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~da~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~~s~~ 300 (468)
T TIGR00839 222 EVNLGATAI-GTGLNTPPEYSPLVVKKLAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGP 300 (468)
T ss_pred hcCCCCcce-eCCCcCChhHHHHHHHHHHHHhCCCCCCCccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999776 99888886544 999999986 4688999999999999999999999999999999999984
Q ss_pred -CCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q psy3416 151 -PQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229 (455)
Q Consensus 151 -~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~ 229 (455)
+|++|+++|.
T Consensus 301 ~~~~~ev~~~~--------------------------------------------------------------------- 311 (468)
T TIGR00839 301 RAGLNEINLPE--------------------------------------------------------------------- 311 (468)
T ss_pred cCCceEEeCCC---------------------------------------------------------------------
Confidence 4566665552
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc
Q psy3416 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE 309 (455)
Q Consensus 230 ~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 309 (455)
+++|||+|||||||+.+|+++++++.+.|...+++.++++.+++++. ++.
T Consensus 312 -----------------------------~~~gSS~MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~~~~~-~e~ 361 (468)
T TIGR00839 312 -----------------------------LQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQLNV-MEP 361 (468)
T ss_pred -----------------------------CCCCCCCCCCCcCcHHHHHHHHHHHHHHhHHHHHHHHHhcCChHhhh-hhH
Confidence 45566666666777777777777888888888877777777766543 222
Q ss_pred -ccchHhHHHHHHHHHHHH-HHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCC
Q psy3416 310 -DKLPLFDTVDNIIMCLVA-SGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKT 387 (455)
Q Consensus 310 -~~~~l~~~~~~~~~~l~~-~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~ 387 (455)
....++++++.+..++.. +..++++|+||++||++|+..+..+++.|+ || .+|+.++++++.+.++|++
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~l~~L~vn~erm~~~l~~~~~~~~~La--------~~-~g~~~a~~~~~~a~~~g~~ 432 (468)
T TIGR00839 362 VIGQAMFESIHILTNACYNLTDKCVNGITANKEICEGYVFNSIGIVTYLN--------PF-IGHHNGDIVGKICAETGKS 432 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhHHHHHHHh--------hH-hhHHHHHHHHHHHHHhCCC
Confidence 245677888888888875 889999999999999999987766665553 44 3888888889999999999
Q ss_pred chhhhHHHHhhhhcCCc-hHHHHhcChhhhhh
Q psy3416 388 FKDLSLAELKTFHSYIS-DDIIDILCIENSIK 418 (455)
Q Consensus 388 ~~e~~~~~~~~~~~~~~-~~l~~~ldp~~~v~ 418 (455)
+.++..++ ..++ +++..++||++++.
T Consensus 433 l~e~~~~~-----~~l~~~~l~~~ldP~~~v~ 459 (468)
T TIGR00839 433 VREVVLEK-----GLLTEEELDDIFSVENLMH 459 (468)
T ss_pred HHHHHHhc-----CCCCHHHHHHHcCHHHHcC
Confidence 99988764 3444 57999999998765
No 33
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=100.00 E-value=4.2e-54 Score=450.78 Aligned_cols=305 Identities=21% Similarity=0.259 Sum_probs=257.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 150 ~v~Ta~~L~~~~~l~~l~~~L~~L~~~L~~~A~~~~~~vm~GrTHlQ~A~PiT~G~~~~~~a~~l~r~~~RL~~~~~~l~ 229 (479)
T PRK14515 150 AFPTAIHIATLNALEGLLQTMGYMHDVFELKAEQFDHVIKMGRTHLQDAVPIRLGQEFKAYSRVLERDMKRIQQSRQHLY 229 (479)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccchhccccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHH-------hcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAK-------LLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN-- 150 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~-------~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~-- 150 (455)
.+|||||++ ||++++++++.++ .+|+.. +..|.++++++||++++++++++.++.+++|||+|+++|++
T Consensus 230 ~~pLG~gAv-GT~~~~~~~~~~~~l~~la~~~gl~~~~~~n~~da~~~rd~~~e~~~~l~~la~~L~kiA~Dl~llsS~p 308 (479)
T PRK14515 230 EVNMGATAV-GTGLNADPEYIEAVVKHLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGP 308 (479)
T ss_pred hccCCCccc-cCCCCCChhHHHHHHHHHHHHhCCCCCCCcchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999998887 9999999865444 466553 23488999999999999999999999999988888888862
Q ss_pred -CCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q psy3416 151 -PQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229 (455)
Q Consensus 151 -~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~ 229 (455)
.|++|+.
T Consensus 309 ~~g~~Ei~------------------------------------------------------------------------ 316 (479)
T PRK14515 309 RVGLAEIM------------------------------------------------------------------------ 316 (479)
T ss_pred cCCeeEEe------------------------------------------------------------------------
Confidence 3555544
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc
Q psy3416 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE 309 (455)
Q Consensus 230 ~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 309 (455)
+|+ .++|||||||||||+++|+++++++++.|.+.+++....+.+..+|. ++.
T Consensus 317 -------------------------lp~-~~~GSSiMP~KrNP~~~E~i~~~a~~v~G~~~~~~~~~~~~~le~n~-~~p 369 (479)
T PRK14515 317 -------------------------LPA-RQPGSSIMPGKVNPVMPEVINQIAFQVIGNDHTICLASEAGQLELNV-MEP 369 (479)
T ss_pred -------------------------CCC-CCCCcCCCCcccCchHHHHHHHHHHHHHhHHHHHHHHHhcccHHHHH-hcc
Confidence 444 36777777777888888888888888888888888777666666654 222
Q ss_pred -ccchHhHHHHHHHHHHHHHHH-hHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCC
Q psy3416 310 -DKLPLFDTVDNIIMCLVASGK-LIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKT 387 (455)
Q Consensus 310 -~~~~l~~~~~~~~~~l~~~~~-~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~ 387 (455)
....++++++.+..+++.+.+ ++++|+||++||++|+..++.++++|++.+ .|+.|++++++|.++|++
T Consensus 370 ~i~~~l~~si~~l~~al~~~~~~~l~gl~vn~erm~~~l~~s~~l~t~La~~i---------G~~~v~~~a~~A~~~g~~ 440 (479)
T PRK14515 370 VLVFNLLQSISIMNNGFRAFTDNCLKGIEANEDRLKEYVEKSVGIITAVNPHI---------GYEAAARVAKEAIATGQS 440 (479)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCccHHHHhcchh---------cHHHHHHHHHHHHHhCCC
Confidence 233688899999999977775 999999999999999999888888887744 377799999999999999
Q ss_pred chhhhHHHHhhhhcCCc-hHHHHhcChhhhhhh
Q psy3416 388 FKDLSLAELKTFHSYIS-DDIIDILCIENSIKF 419 (455)
Q Consensus 388 ~~e~~~~~~~~~~~~~~-~~l~~~ldp~~~v~~ 419 (455)
+.|++.+. ..++ +++.+++||++++.+
T Consensus 441 l~e~~~~~-----~~l~~~el~~~ldP~~~~~~ 468 (479)
T PRK14515 441 VRELCVKN-----GVLSQEDLELILDPFEMTHP 468 (479)
T ss_pred HHHHHHhc-----CCCCHHHHHHhCCHHHcCCC
Confidence 99987653 3444 579999999998853
No 34
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=100.00 E-value=1.1e-53 Score=446.17 Aligned_cols=299 Identities=20% Similarity=0.247 Sum_probs=254.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++++||||||+|+|||||||||+++|+++|.|+.+||..++++++
T Consensus 139 ~v~t~~~L~lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 218 (450)
T cd01596 139 FPPAAHIAAALALLERLLPALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFSGYAAQLARDIARIEAALERLR 218 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCeeehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHH-------HHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh---
Q psy3416 81 ISPLGSAALAGTTHHINRYL-------TAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM--- 149 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~-------~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~--- 149 (455)
.+||||+++ |+++++++++ +|++|||+. +..|.++|+++||++++++++++.++++++|||+|+++|+
T Consensus 219 ~~plGg~A~-Gt~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~d~~~~rd~~~e~~~~la~~~~~l~ria~Dl~~~ss~~ 297 (450)
T cd01596 219 ELNLGGTAV-GTGLNAPPGYAEKVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSGP 297 (450)
T ss_pred HhCCCCcce-eCCCCCChhHHHHHHHHHHHHhCCCCccCcCHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999776 8988998754 699999995 6778899999999999999999999999999999988888
Q ss_pred cCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q psy3416 150 NPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229 (455)
Q Consensus 150 ~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~ 229 (455)
++||||+++|
T Consensus 298 ~~e~gev~~~---------------------------------------------------------------------- 307 (450)
T cd01596 298 RAGLGEINLP---------------------------------------------------------------------- 307 (450)
T ss_pred cCCCeeEECC----------------------------------------------------------------------
Confidence 4467666544
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc
Q psy3416 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE 309 (455)
Q Consensus 230 ~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 309 (455)
+ .++|||+|||||||+.+|+++++++.+.|...+++...++.|+.++.+...
T Consensus 308 ---------------------------~-~~~GSS~MPqKrNP~~~E~ir~~a~~~~g~~~~~~~~~~~~~~e~~~~~~~ 359 (450)
T cd01596 308 ---------------------------A-NQPGSSIMPGKVNPVIPEAVNMVAAQVIGNDTAITMAGSAGQLELNVFKPV 359 (450)
T ss_pred ---------------------------C-CCCCCCCCCCCCCCHHHHHHHHHHHHHhccHHHHHHHhhcCcccccchhhH
Confidence 4 456777777777777778888888888999888887777777776555433
Q ss_pred ccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCc
Q psy3416 310 DKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTF 388 (455)
Q Consensus 310 ~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~ 388 (455)
....+++.+..+..++..+. .++++|+||+++|++|+..++.+++++++.| +|+.++++++++.++|+++
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~l~~l~v~~~rm~~~l~~~~~~~t~LA~~l---------g~~~a~~~v~~a~~~g~~l 430 (450)
T cd01596 360 IAYNLLQSIRLLANACRSFRDKCVEGIEANEERCKEYVENSLMLVTALNPHI---------GYEKAAEIAKEALKEGRTL 430 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcchHHHHhHHH---------hHHHHHHHHHHHHHcCCCH
Confidence 23357777777888777777 9999999999999999998888889999887 4556666788888999999
Q ss_pred hhhhHHHHhhhhcCCch-HHHHhcC
Q psy3416 389 KDLSLAELKTFHSYISD-DIIDILC 412 (455)
Q Consensus 389 ~e~~~~~~~~~~~~~~~-~l~~~ld 412 (455)
.++..++ .++++ ++..++|
T Consensus 431 ~~~~~~~-----~~~~~~~l~~~~d 450 (450)
T cd01596 431 REAALEL-----GLLTEEELDEILD 450 (450)
T ss_pred HHHHHHh-----CCCCHHHHHHHhC
Confidence 9988764 45554 4666554
No 35
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=100.00 E-value=3e-52 Score=420.92 Aligned_cols=241 Identities=38% Similarity=0.589 Sum_probs=222.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|.+++++|.++|++|++|+||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 83 i~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 162 (325)
T cd01334 83 IVDTALRLALRDALDILLPALKALIDALAAKAEEHKDTVMPGRTHLQDAQPTTLGHELAAWAAELERDLERLEEALKRLN 162 (325)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeecccccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCc--CcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecc
Q psy3416 81 ISPLGSAALAGTTH--HINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTL 158 (455)
Q Consensus 81 ~~~lGga~~~G~~~--~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~ 158 (455)
.+|+|+|+++|+.. +++++++++.|||..+..|+++++++||+++|++++++.++.+++|||+|+++|+++|+||+.+
T Consensus 163 ~~~lG~gA~g~~~~~~~~~~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~~~e~gev~~ 242 (325)
T cd01334 163 VLPLGGGAVGTGANAPPIDRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSGEFGEVEL 242 (325)
T ss_pred hcCCcHhHHhCcCCCCcchHHHHHHHhcCcCcCcCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeEEC
Confidence 99999888778888 9999999999999778888888899999999999999999999999999998888888888766
Q ss_pred cCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy3416 159 PESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRI 238 (455)
Q Consensus 159 ~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~ 238 (455)
|+.
T Consensus 243 ~~~----------------------------------------------------------------------------- 245 (325)
T cd01334 243 PDA----------------------------------------------------------------------------- 245 (325)
T ss_pred CCC-----------------------------------------------------------------------------
Confidence 654
Q ss_pred HHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHH
Q psy3416 239 SEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTV 318 (455)
Q Consensus 239 ~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~ 318 (455)
+++|||+|||||||+.+|+++++++.+.|...+++..+.+.|..|++|+++.|..+++++
T Consensus 246 --------------------~~~gSS~MP~KrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 305 (325)
T cd01334 246 --------------------KQPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGPLEDNVDSPVEREALPDSF 305 (325)
T ss_pred --------------------CCCCcccCCCCCCCHHHHHHHHHHHHHhhHHHHHHHHHhcCchhhhcccHHHHHHHHHHH
Confidence 356666667777777777778888889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhcCC
Q psy3416 319 DNIIMCLVASGKLIEKATFN 338 (455)
Q Consensus 319 ~~~~~~l~~~~~~l~~l~v~ 338 (455)
..+..+++.+..++++|+||
T Consensus 306 ~~~~~~l~~~~~~~~~l~v~ 325 (325)
T cd01334 306 DLLDAALRLLTGVLEGLEVN 325 (325)
T ss_pred HHHHHHHHHHHHHhCcCEeC
Confidence 99999999999999999986
No 36
>PRK09285 adenylosuccinate lyase; Provisional
Probab=100.00 E-value=1.9e-51 Score=429.59 Aligned_cols=309 Identities=15% Similarity=0.140 Sum_probs=247.8
Q ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHIDI-IIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~-l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++|+++.. +.+.|..++++|.++|++|++|+|+||||+|||+|||||||+++|+++|.|+++||.++ .
T Consensus 126 i~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~TfG~~~a~~~~~l~r~~~rL~~~---~ 202 (456)
T PRK09285 126 INNLSHALMLKEAREEVLLPALRELIDALKELAHEYADVPMLSRTHGQPATPTTLGKEMANVAYRLERQLKQLEAV---E 202 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeceecCCCCeeehHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 6899999999999998 99999999999999999999999999999999999999999999999999999999998 4
Q ss_pred cccCCCccccCC-CCc---C------cchHHHHHhcCCCCCCCCchhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3416 80 NISPLGSAALAG-TTH---H------INRYLTAKLLDFEKPSENSLDS-ISDRDFVIEFISTCCLIVMHLSRISEEFIIF 148 (455)
Q Consensus 80 ~~~~lGga~~~G-~~~---~------~~~~~~a~~LG~~~~~~n~~~~-~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l 148 (455)
..+++||++++- ... + ++ +.+++.|||..+ +++| +.+||++++++++++.++++++|||+|+++|
T Consensus 203 ~~g~~~GAvGt~~a~~~~~~~~~~~~v~-~~~~~~LGL~~~---~~~~~v~~rD~~~e~~~~la~~a~~L~kia~Di~ll 278 (456)
T PRK09285 203 ILGKINGAVGNYNAHLAAYPEVDWHAFS-REFVESLGLTWN---PYTTQIEPHDYIAELFDAVARFNTILIDLDRDVWGY 278 (456)
T ss_pred HhhhcccccccHHHHhhhcCCccHHHHH-HHHHHHhCCCCC---CCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777775321 110 2 54 455669999964 3567 5999999999999999999999999999999
Q ss_pred hcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 149 MNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 149 ~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
++ ++|+..+.
T Consensus 279 ~~--~~e~~e~~-------------------------------------------------------------------- 288 (456)
T PRK09285 279 IS--LGYFKQKT-------------------------------------------------------------------- 288 (456)
T ss_pred hC--chhhhccC--------------------------------------------------------------------
Confidence 98 44442221
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcc-hhhccccc
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQ-TLAYNKDL 307 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~ 307 (455)
+..++|||+|||||||+.+|.++++++.+.+....++. ++ .++|+||+
T Consensus 289 ----------------------------~~~~~GSS~MPhKrNPv~~E~i~~~a~~~~~~~~~~~~---~~~~~~~eRD~ 337 (456)
T PRK09285 289 ----------------------------KAGEIGSSTMPHKVNPIDFENSEGNLGLANALLEHLAA---KLPISRWQRDL 337 (456)
T ss_pred ----------------------------CCCCCCCCCCCCCcCchHHHHHHHHHHHHHHHHHHHHh---hccHHhhCCcC
Confidence 11344555555555555555555555555555444433 34 57799998
Q ss_pred cc---ccchHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH
Q psy3416 308 QE---DKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCN 382 (455)
Q Consensus 308 ~~---~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~ 382 (455)
++ .|.. ++++..+..+++.+..++++|+||++||++|+. .| +++|.++..|++ +++.+||++|+++++.+.
T Consensus 338 ~~~~~e~~~-~~~~~~~~~~l~~~~~~l~~L~V~~~rm~~nl~~~~~-~~sE~~~~~l~~--~gr~~A~~~v~~~~~~~~ 413 (456)
T PRK09285 338 TDSTVLRNL-GVAFGYSLIAYDSLLKGLGKLEVNEARLAEDLDANWE-VLAEPIQTVMRR--YGIENPYEKLKELTRGKR 413 (456)
T ss_pred chhhhhcch-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhcCc-chHHHHHHHHHH--hChHhHHHHHHHHHHHHH
Confidence 65 4555 999999999999999999999999999999984 55 788888877776 777899999999999999
Q ss_pred HcCCCchhh---hHHHHhhhhcCCchHHHHhcChhhhhhhhccCCCCcHHHHHHH
Q psy3416 383 EKHKTFKDL---SLAELKTFHSYISDDIIDILCIENSIKFKNHIGGTSPEQVKIT 434 (455)
Q Consensus 383 ~~g~~~~e~---~~~~~~~~~~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~ 434 (455)
+++++|.++ +.++ +.+. +++ ..+||+ .|.|.+++.++++
T Consensus 414 ~~~~~~~e~~~~l~~~-~~~~----~~l-~~~~p~-------~ylg~a~~~~~~~ 455 (456)
T PRK09285 414 ITAEALREFIDGLDLP-EEAK----ARL-KALTPA-------NYIGLAAELADEI 455 (456)
T ss_pred hccCCHHHHHHHhcCC-HhHH----HHH-HcCCHH-------HHHhhHHHHHHhh
Confidence 999999998 6543 3332 678 999998 4999999988764
No 37
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=100.00 E-value=1.1e-48 Score=404.84 Aligned_cols=267 Identities=17% Similarity=0.174 Sum_probs=212.8
Q ss_pred ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHI-DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~-~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++|+++ ..+.+.|..++++|.++|++|++|+|+||||+|||+|||||||+++|+++|.|+++||.++.
T Consensus 104 i~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~~~~dt~m~GrTH~Q~A~P~TfG~~~a~w~~~L~r~~~RL~~~~--- 180 (425)
T cd01598 104 INNLAYALMIKEARNEVILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPTTLGKELAVFVYRLERQYKQLKQIE--- 180 (425)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCCccCeehhHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 68999999999999 56789999999999999999999999999999999999999999999999999999999983
Q ss_pred cccCCCccccCCCC---------cCcchHHHHHhcCCCCCCCCchhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3416 80 NISPLGSAALAGTT---------HHINRYLTAKLLDFEKPSENSLDS-ISDRDFVIEFISTCCLIVMHLSRISEEFIIFM 149 (455)
Q Consensus 80 ~~~~lGga~~~G~~---------~~~~~~~~a~~LG~~~~~~n~~~~-~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~ 149 (455)
..+++||++++-.. ++...+.+++.|||..+. .+| +++||+++|++++|+.++++++|||+|+++|+
T Consensus 181 ~~g~~gGavGt~~~~~~~~~~~~~~~~~~~~a~~LgL~~~~---~~~~v~~rD~~~e~~~~La~la~~L~kia~Di~ll~ 257 (425)
T cd01598 181 ILGKFNGAVGNFNAHLVAYPDVDWRKFSEFFVTSLGLTWNP---YTTQIEPHDYIAELFDALARINTILIDLCRDIWGYI 257 (425)
T ss_pred HhheeeCchhhhhhhhhccCcccHHHHHHHHHHHhCcCCCC---cccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45568887642110 123356899999999754 357 69999999999999999999999999999999
Q ss_pred cCCcceecc-cCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 150 NPQFNFLTL-PESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 150 ~~ei~el~~-~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
++|+ +.+ +...++|||+||||+||+.+|.
T Consensus 258 s~ge--~~e~~~~~~~GSS~MPhKrNPv~~E~------------------------------------------------ 287 (425)
T cd01598 258 SLGY--FKQKVKKGEVGSSTMPHKVNPIDFEN------------------------------------------------ 287 (425)
T ss_pred CCcc--eeecCCCCCCCcCCCCCCcCchHHHH------------------------------------------------
Confidence 8743 322 2334555555555555555554
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcc-hhhccccc
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQ-TLAYNKDL 307 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~ 307 (455)
++++++.+.+....++. ++ +++|+||+
T Consensus 288 -------------------------------------------------i~~~a~~a~~~~~~~~~---~~~~~~~eRD~ 315 (425)
T cd01598 288 -------------------------------------------------AEGNLGLSNALLNHLSA---KLPISRLQRDL 315 (425)
T ss_pred -------------------------------------------------HHHHHHHHHHHHHHHHh---hhhhhhhcccc
Confidence 44444444333333332 34 57899998
Q ss_pred cc---ccchHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q psy3416 308 QE---DKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIK 379 (455)
Q Consensus 308 ~~---~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~ 379 (455)
++ .|.. ++++..+..+++.+..++++|+||+++|++|+. .| +++|.++..|.. +++++||++|+++++
T Consensus 316 ~~~~~e~~~-~~~~~~~~~al~~~~~ll~~L~v~~~rm~~nl~~~~~-i~sE~~~~~l~~--~gr~~Ah~~V~~~~~ 388 (425)
T cd01598 316 TDSTVLRNI-GVAFGHSLIAYKSLLRGLDKLELNEARLLEDLDANWE-VLAEPIQTVMRR--YGIPNPYEKLKDLTR 388 (425)
T ss_pred cchhhhccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcC-HHHHHHHHHHHh--cChHhHHHHHHHHhC
Confidence 65 4444 999999999999999999999999999999984 44 667766666654 788999999999986
No 38
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=100.00 E-value=5.1e-48 Score=391.18 Aligned_cols=229 Identities=23% Similarity=0.224 Sum_probs=206.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.+..++++|.++|++|++++||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 102 ~~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~grTH~Q~A~P~T~G~~l~~~~~~l~r~~~rL~~~~~~~~ 181 (338)
T TIGR02426 102 VIDTSLMLQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLLQQAVPTTFGLKAAGWLAAVLRARDRLAALRTRAL 181 (338)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceecccCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCc-----CcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcce
Q psy3416 81 ISPLGSAALAGTTH-----HINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNF 155 (455)
Q Consensus 81 ~~~lGga~~~G~~~-----~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~e 155 (455)
.+|+||++++|++. ++ ++++++.|||+.|.. +|+++||+++|++++++.++.+++|||+|+++|+++|+||
T Consensus 182 ~~~lGgavGtg~~~~~~~~~v-~~~~a~~LGl~~~~~---~~~~~rd~~~e~~~~l~~la~~l~ria~Dl~l~s~~e~ge 257 (338)
T TIGR02426 182 PLQFGGAAGTLAALGTRGGAV-AAALAARLGLPLPAL---PWHTQRDRIAEFGSALALVAGALGKIAGDIALLSQTEVGE 257 (338)
T ss_pred hcCCcchhccCCCccchHHHH-HHHHHHHhCcCCCCC---cchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 99999998777663 34 689999999998764 3899999999999999999999999999999999999887
Q ss_pred ecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q psy3416 156 LTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHL 235 (455)
Q Consensus 156 l~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l 235 (455)
+.+ .
T Consensus 258 i~~--~-------------------------------------------------------------------------- 261 (338)
T TIGR02426 258 VFE--A-------------------------------------------------------------------------- 261 (338)
T ss_pred hhh--C--------------------------------------------------------------------------
Confidence 532 1
Q ss_pred HHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccc---cccccc
Q psy3416 236 SRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKD---LQEDKL 312 (455)
Q Consensus 236 ~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~ 312 (455)
+++|||+|||||||+.+|+++++++.+.|...+++.. ++.+++|| ++.+|.
T Consensus 262 -----------------------~~~GSSiMPqK~NP~~~E~i~~~a~~~~g~~~~~~~~---~~~~~Er~~~~~~~e~~ 315 (338)
T TIGR02426 262 -----------------------GGGGSSAMPHKRNPVGAALLAAAARRVPGLAATLHAA---LPQEHERSLGGWHAEWE 315 (338)
T ss_pred -----------------------CCCCcccCCCCCCcHHHHHHHHHHHHHHHHHHHHHHh---chHhhccCCCchHHHHH
Confidence 3467777778888888888888888888888777654 58999999 477899
Q ss_pred hHhHHHHHHHHHHHHHHHhHhhh
Q psy3416 313 PLFDTVDNIIMCLVASGKLIEKA 335 (455)
Q Consensus 313 ~l~~~~~~~~~~l~~~~~~l~~l 335 (455)
.+++++..++.+|+.+..++++|
T Consensus 316 ~lp~~~~~~~~~l~~~~~~l~~l 338 (338)
T TIGR02426 316 TLPELVRLTGGALRQAQVLAEGL 338 (338)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999875
No 39
>PLN02848 adenylosuccinate lyase
Probab=100.00 E-value=2.6e-47 Score=398.01 Aligned_cols=310 Identities=15% Similarity=0.152 Sum_probs=239.1
Q ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHIDI-IIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~-l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++|+++.. +.+.|..++++|.++|++|++++|+||||+|||+|||||||+++|+++|.|+.+||.++.
T Consensus 129 i~dTa~~L~lr~a~~~~l~~~L~~l~~aL~~lA~~~~dt~m~GRTH~Q~A~PiTfG~~~a~w~~~L~r~~~rL~~~~--- 205 (458)
T PLN02848 129 INNLSHALMLKEGVNSVVLPTMDEIIKAISSLAHEFAYVPMLSRTHGQPASPTTLGKEMANFAYRLSRQRKQLSEVK--- 205 (458)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 5899999999999999 999999999999999999999999999999999999999999999999999999998872
Q ss_pred cccCCCccccCCCC----cC-cch----HHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3416 80 NISPLGSAALAGTT----HH-INR----YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN 150 (455)
Q Consensus 80 ~~~~lGga~~~G~~----~~-~~~----~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~ 150 (455)
..+++||++++... ++ +++ +.+++.|||..... .+++.+||+++|++++++.++++++|||+|++.++
T Consensus 206 l~g~~~GAvGt~aa~~~~~~~~d~~~v~~~la~~LGL~~~~~--~~~v~~rD~~~e~~~~La~~a~~l~kia~Di~~~~- 282 (458)
T PLN02848 206 IKGKFAGAVGNYNAHMSAYPEVDWPAVAEEFVTSLGLTFNPY--VTQIEPHDYMAELFNAVSRFNNILIDFDRDIWSYI- 282 (458)
T ss_pred hccEeecccchhhhhhhccCCCCHHHHHHHHHHHhCCCCCCc--hhhHhccHHHHHHHHHHHHHHHHHHHHHHHHHhhh-
Confidence 34677777643222 23 443 34666799985222 23579999999999999999999999999988777
Q ss_pred CCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHH
Q psy3416 151 PQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCL 230 (455)
Q Consensus 151 ~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~ 230 (455)
|+||+.++.
T Consensus 283 -e~ge~~e~~---------------------------------------------------------------------- 291 (458)
T PLN02848 283 -SLGYFKQIT---------------------------------------------------------------------- 291 (458)
T ss_pred -hcCCccccc----------------------------------------------------------------------
Confidence 666653321
Q ss_pred HHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhc-chhhccccccc
Q psy3416 231 IVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKC-QTLAYNKDLQE 309 (455)
Q Consensus 231 ~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~ 309 (455)
...+.|||+|||||||+.+|.++++++.+.|....++ .+ .+.+++||+++
T Consensus 292 --------------------------~~~~~GSS~MP~KrNPv~~E~i~~~a~~~~~~~~~~~---~~~~~~~~eRD~~~ 342 (458)
T PLN02848 292 --------------------------KAGEVGSSTMPHKVNPIDFENSEGNLGLANAELSHLS---MKLPISRMQRDLTD 342 (458)
T ss_pred --------------------------CCCCCCcCCCCCCcCcHHHHHHHHHHHHHHHHHHHHH---hcCcchhhccccch
Confidence 1135677777777777777777777788888777665 45 44569999855
Q ss_pred ---ccchHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHc
Q psy3416 310 ---DKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEK 384 (455)
Q Consensus 310 ---~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~ 384 (455)
.|.. ++++..+..+++.+..++++|+||++||++|+. .|+ ++|.++..|++ +++.+||++|+++++.-.-.
T Consensus 343 s~~e~~~-~~~~~~~~~al~~~~~~l~~L~v~~~rm~~nl~~~~~~-~sE~~~~~l~~--~G~~~A~e~v~~~~~~~~~~ 418 (458)
T PLN02848 343 STVLRNM-GVGLGHSLLAYKSTLRGIGKLQVNEARLAEDLDQTWEV-LAEPIQTVMRR--YGVPEPYEKLKELTRGRAVT 418 (458)
T ss_pred hhhhccH-HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHccchh-HHHHHHHHHHH--hChHHHHHHHHHHHHHccCC
Confidence 4555 999999999999999999999999999999985 444 88888888887 56679999999999642111
Q ss_pred CCCchhhhHHHHhhhhcCCch---HHHHhcChhhhhhhhccCCCCcHHHHHH
Q psy3416 385 HKTFKDLSLAELKTFHSYISD---DIIDILCIENSIKFKNHIGGTSPEQVKI 433 (455)
Q Consensus 385 g~~~~e~~~~~~~~~~~~~~~---~l~~~ldp~~~v~~~~~~~G~a~~~v~~ 433 (455)
..++.+... .+ . +++ +-...|.|. .|+|.+++.+++
T Consensus 419 ~~~~~~~~~----~~-~-~~~~~~~~l~~~~~~-------~y~g~~~~~~~~ 457 (458)
T PLN02848 419 KESMREFIE----GL-E-LPEEAKDQLLKLTPH-------TYIGAAAALALN 457 (458)
T ss_pred HHHHHHHHH----Hc-C-CCHHHHHHHHhCCch-------hhhchHHHHHhh
Confidence 111222211 11 1 222 233457776 699999998864
No 40
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=100.00 E-value=2.4e-47 Score=387.36 Aligned_cols=230 Identities=22% Similarity=0.235 Sum_probs=200.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++|||+||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 111 i~dTa~~L~lr~~l~~l~~~L~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P~TfG~~~a~~~~~l~r~~~rL~~~~~~~~ 190 (351)
T PRK05975 111 VIDTSLMLRLKAASEILAARLGALIARLDALEATFGQNALMGHTRMQAAIPITVADRLASWRAPLLRHRDRLEALRADVF 190 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeeecccCCCcCeehhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccC----CCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee
Q psy3416 81 ISPLGSAALA----GTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 156 (455)
Q Consensus 81 ~~~lGga~~~----G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el 156 (455)
.+||||++++ |+..+.+++++|+.|||..+. +|+++||++++++++++.++++++|||+|+++|+++| +|+
T Consensus 191 ~~~lGGAvGt~~~~~~~~~~~~~~~a~~LGl~~~~----~~~~~rD~~~e~~~~la~la~~l~kiA~Di~ll~s~e-gev 265 (351)
T PRK05975 191 PLQFGGAAGTLEKLGGKAAAVRARLAKRLGLEDAP----QWHSQRDFIADFAHLLSLVTGSLGKFGQDIALMAQAG-DEI 265 (351)
T ss_pred hcCCccHhccCccCCCcHHHHHHHHHHHhCcCCCc----chhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-Ccc
Confidence 9999999866 333467789999999997543 5899999999999999999999999999999999999 998
Q ss_pred cccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q psy3416 157 TLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLS 236 (455)
Q Consensus 157 ~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~ 236 (455)
.+|. ++|||+||||+||+.+|.+.
T Consensus 266 ~~~~--~~GSS~MPhKrNPv~~E~i~------------------------------------------------------ 289 (351)
T PRK05975 266 SLSG--GGGSSAMPHKQNPVAAETLV------------------------------------------------------ 289 (351)
T ss_pred cCCC--CCccCCCCCCcCcHHHHHHH------------------------------------------------------
Confidence 7775 47777777777777777653
Q ss_pred HHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccc---cccccch
Q psy3416 237 RISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKD---LQEDKLP 313 (455)
Q Consensus 237 ~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d---~~~~~~~ 313 (455)
+.++.+.+...++ ..+++.+++|| |+.+|..
T Consensus 290 -------------------------------------------~~ar~~~~~~~~~---~~~~~~~~er~~~~~~~e~~~ 323 (351)
T PRK05975 290 -------------------------------------------TLARFNATQVSGL---HQALVHEQERSGAAWTLEWMI 323 (351)
T ss_pred -------------------------------------------HHHHHHHHHHHHH---HhcccchhccCCchHHHHHHH
Confidence 2222333333222 23568899999 4778999
Q ss_pred HhHHHHHHHHHHHHHHHhHhhhcC
Q psy3416 314 LFDTVDNIIMCLVASGKLIEKATF 337 (455)
Q Consensus 314 l~~~~~~~~~~l~~~~~~l~~l~v 337 (455)
+++++..+..++..+..++++|++
T Consensus 324 lp~~~~~~~~~l~~~~~ll~~l~~ 347 (351)
T PRK05975 324 LPQMVAATGAALRLALELAGNIRR 347 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhHh
Confidence 999999999999999999999974
No 41
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=100.00 E-value=1.1e-43 Score=356.70 Aligned_cols=185 Identities=38% Similarity=0.554 Sum_probs=174.7
Q ss_pred ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHI-DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~-~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++|+++ ..+.+.|..++++|.++|++|++|+||||||+|||+|||||||+++|+++|.|+++||.++++++
T Consensus 114 i~~Ta~~l~lr~~~~~~l~~~l~~l~~~L~~~a~~~~~t~~~grTh~Q~A~P~T~G~~~a~~~~~l~r~~~rL~~~~~~~ 193 (312)
T PF00206_consen 114 IVDTALRLQLRDALLELLLERLKALIDALAELAEEHKDTPMPGRTHGQPAQPTTFGHKLAAWADELARDLERLEEARKRL 193 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcCceeccccccccccceeHHHHHHHHHHHHHHHHHHHHHhHhHH
Confidence 57999999999999 66999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCcchH---HHHHhcC-CCC---CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy3416 80 NISPLGSAALAGTTHHINRY---LTAKLLD-FEK---PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 152 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~~~~---~~a~~LG-~~~---~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~e 152 (455)
+.+|||||++.|++++++++ ++++.|| |.. +..|..+|+++||++++++++++.++++++|||+|+++|+++|
T Consensus 194 ~~~~lgga~g~gt~~~~~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~rd~~~e~~~~l~~l~~~l~kia~Dl~~~~s~e 273 (312)
T PF00206_consen 194 NVSPLGGAVGAGTSLGIDREFQERVAEELGEFTGLGVPAPNWHDAVSSRDRLAELASALALLAGTLSKIAEDLRLLSSTE 273 (312)
T ss_dssp HEEETTTTTTTSSHTTSHHHHHHHHHHHHHHHHCSTEECSSHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred HHHhccCCCccccccccCcchhhhHHhhhhhhhhcccchhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 99999999999999999987 8899998 665 7788888999999999999999999999999999999999999
Q ss_pred cceecccCCCC-ccccccCCCCCcchHHHHHHHH
Q psy3416 153 FNFLTLPESFL-TGSSIMPQKKNPDVKDLRQRAA 185 (455)
Q Consensus 153 i~el~~~e~~~-~gSStMP~K~NP~~~e~~~~~~ 185 (455)
+|++++|.+.. +|||+||||+||+.+|.+.+.+
T Consensus 274 ~g~~~~~~~~~~~GSS~MP~K~NP~~~E~i~~~a 307 (312)
T PF00206_consen 274 IGEVEEPFPEGQVGSSIMPHKRNPVILENIRGLA 307 (312)
T ss_dssp TSSEEEEGGGSSSCSSSSTTCEETHHHHHHHHHH
T ss_pred eeeeecccccccCCCccCCCCCCCHHHHHHHHhh
Confidence 99999987764 5999999999999999886544
No 42
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.1e-41 Score=335.40 Aligned_cols=306 Identities=24% Similarity=0.310 Sum_probs=248.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
+.+|++++.+...+..+.+.+..|++++..++++|++.+++||||+|||.|+|+|+.|.+|+..|.||+.||.++.+++.
T Consensus 145 ~yPTa~ria~~~~l~~L~~al~~L~~af~~Ka~EF~~ilKmGRTqLQDAvPmtlGqEF~Afa~~l~ed~~ri~~~~~~l~ 224 (471)
T COG1027 145 AYPTAFRIAVYKSLRKLIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTLGQEFGAFAVALKEDIKRIYRAAELLL 224 (471)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcChhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcch-------HHHHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC
Q psy3416 81 ISPLGSAALAGTTHHINR-------YLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM-NP 151 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~-------~~~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~-~~ 151 (455)
.+.+||+++ ||+...++ +++++..|++- +..|.++++.+.+.++++.+.|..++..++|||+|+|+|+ +|
T Consensus 225 evNlGgTAi-GTGiNa~~~Y~~~vv~~l~evtg~~~~~A~~Lieatq~~~afv~vsg~lk~~Av~LsKI~NDlRLLsSGP 303 (471)
T COG1027 225 EVNLGGTAI-GTGINAPKGYIELVVKKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLLSSGP 303 (471)
T ss_pred hhcCCceee-ccCcCCChhHHHHHHHHHHHHhCCCCccchhHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhhhhhccCC
Confidence 999999997 88876654 45889999984 6788899999999999999999999999999999999997 34
Q ss_pred --CcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q psy3416 152 --QFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229 (455)
Q Consensus 152 --ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~ 229 (455)
|++|+.+|+. |.|||+||
T Consensus 304 r~Gl~EI~LP~~-Q~GSSIMP----------------------------------------------------------- 323 (471)
T COG1027 304 RAGLNEINLPAV-QAGSSIMP----------------------------------------------------------- 323 (471)
T ss_pred ccCcccccCCCC-CCCCCCCC-----------------------------------------------------------
Confidence 6777766653 44455555
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc
Q psy3416 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE 309 (455)
Q Consensus 230 ~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 309 (455)
.|+||+++|.+.+.|..+.|++.++-.+...-.+..|-=-..
T Consensus 324 --------------------------------------gKVNPVipEvvnQvcf~ViGnD~tit~AaeaGQLqLNvmePv 365 (471)
T COG1027 324 --------------------------------------GKVNPVIPEVVNQVCFKVIGNDTTITMAAEAGQLQLNVMEPV 365 (471)
T ss_pred --------------------------------------CCcCchhHHHHHHHHHHHhcchHHHHHHHHhcchhhhhhhHH
Confidence 455555555555555555555544433322211111000000
Q ss_pred ccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCc
Q psy3416 310 DKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTF 388 (455)
Q Consensus 310 ~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~ 388 (455)
--..++++++.+..++..++ +|+++|+.|+++|++++.++....|.|-.++ +|+.+.+++++|.+.|+++
T Consensus 366 I~~~l~~Si~iL~na~~~l~ekcI~gItaN~e~C~~~v~nSigivTaLnp~i---------Gy~~~~~iaK~a~~tgksv 436 (471)
T COG1027 366 IAYALFESISILTNACRNLREKCIDGITANEERCEEYVENSIGIVTALNPYI---------GYENAAIIAKEALETGKSV 436 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCHHHHHHHHHhhhHHHHhhcccc---------cchHHHHHHHHHHHcCCcH
Confidence 11268999999999999999 5999999999999999999988888877777 7889999999999999999
Q ss_pred hhhhHHHHhhhhcCCc-hHHHHhcChhhhhhh
Q psy3416 389 KDLSLAELKTFHSYIS-DDIIDILCIENSIKF 419 (455)
Q Consensus 389 ~e~~~~~~~~~~~~~~-~~l~~~ldp~~~v~~ 419 (455)
.|+.++. ..+. +++.++|+|+++..+
T Consensus 437 ~evvLe~-----g~Lteeel~~Il~~~~m~~p 463 (471)
T COG1027 437 REVVLER-----GLLTEEELDDILSPENMTKP 463 (471)
T ss_pred HHHHHHh-----CCCCHHHHHHHhChhhcCCc
Confidence 9999874 4454 689999999986653
No 43
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=100.00 E-value=1.4e-40 Score=328.39 Aligned_cols=295 Identities=20% Similarity=0.288 Sum_probs=245.0
Q ss_pred ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHI-DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~-~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
+++||+++..-.++ ..|++.|..|.++|.++|++|++.|.+||||+|||.|+|||+.|++|...|.+.++|+...++++
T Consensus 142 tfPTAmhIAa~~~v~~~LiPaL~~L~~~L~~Ka~~~~~iVKiGRTHLqDAtPlTlGQE~sGy~~ql~~~~~~i~~~l~~l 221 (462)
T COG0114 142 TFPTAMHIAAVLAVVNRLIPALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTLGQEFSGYAAQLEHALERIEASLPHL 221 (462)
T ss_pred chhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhhhcCcccccccCcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999977666 58999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCcch-------HHHHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c
Q psy3416 80 NISPLGSAALAGTTHHINR-------YLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM-N 150 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~~~-------~~~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~-~ 150 (455)
...++||+++ ||+....+ +.+++..|+.. +..|.|.+.++.|.++++...|..++..|.|||+|+|+|. +
T Consensus 222 ~eLAiGGTAV-GTGlNa~p~f~ekva~~i~~~TG~~F~~a~NkF~al~~hd~lv~~~Gal~~lA~~L~KIAnDiR~l~SG 300 (462)
T COG0114 222 YELAIGGTAV-GTGLNAHPEFGEKVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSG 300 (462)
T ss_pred HHHccCCccc-ccCcCCCccHHHHHHHHHHHHhCCCcccCCcHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999997 88876554 34677777774 4678899999999999999999999999999999999996 4
Q ss_pred C--CcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 151 P--QFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 151 ~--ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
| |+||+++||. .+|||+||.|.||+.||.+.
T Consensus 301 Pr~GLgEi~lPen-ePGSSIMPGKVNPtq~EA~t---------------------------------------------- 333 (462)
T COG0114 301 PRCGLGEIELPEN-EPGSSIMPGKVNPTQCEALT---------------------------------------------- 333 (462)
T ss_pred CCCCccccccCCC-CCCccCCCCCCCchhHHHHH----------------------------------------------
Confidence 4 8999988864 66777777777777766543
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHH----------HHhhhc
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINI----------LTTMKC 298 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~----------~~~~~~ 298 (455)
+.|.++.|++.++ ++.+++
T Consensus 334 ---------------------------------------------------mv~~QV~Gnd~ai~~ags~GnFELNv~~P 362 (462)
T COG0114 334 ---------------------------------------------------MVAAQVIGNDAAIAFAGSQGNFELNVFKP 362 (462)
T ss_pred ---------------------------------------------------HHHHHHHcchHHHHHhhccCceeeccccH
Confidence 3333333333322 222221
Q ss_pred chhhcccccccccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHH
Q psy3416 299 QTLAYNKDLQEDKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSI 377 (455)
Q Consensus 299 ~~~~~~~d~~~~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~ 377 (455)
+ ..| .+.+++.++.++++.|. .|+.+|++|+++|.+++.++.++.|.|...+ .|+...++
T Consensus 363 v-i~~---------N~LqS~~LLada~~~f~~~ci~gie~n~~~i~~~l~~SlmLVTaLnp~I---------GYdkAa~I 423 (462)
T COG0114 363 V-IAY---------NFLQSVRLLADAMRSFADHCIVGIEPNEERIKELLERSLMLVTALNPHI---------GYDKAAKI 423 (462)
T ss_pred H-HHH---------HHHHHHHHHHHHHHHHHHHHhhccccCHHHHHHHHhhCchHHHhccccc---------chHHHHHH
Confidence 1 233 57899999999999999 7999999999999999999999999877766 67788899
Q ss_pred HHHHHHcCCCchhhhHHHHhhhhcCC-chHHHHhcChhhhhh
Q psy3416 378 IKYCNEKHKTFKDLSLAELKTFHSYI-SDDIIDILCIENSIK 418 (455)
Q Consensus 378 ~~~a~~~g~~~~e~~~~~~~~~~~~~-~~~l~~~ldp~~~v~ 418 (455)
++.|.++|++++|...+. .++ ++++.+++||++++.
T Consensus 424 AK~A~keg~tlreaa~~~-----G~lte~efd~~v~Pe~mv~ 460 (462)
T COG0114 424 AKKAHKEGTTLREAALEL-----GLLSEEEFDKLVDPEKMVG 460 (462)
T ss_pred HHHHHHCCCcHHHHHHHc-----CCCCHHHHHHhcCHHHhcC
Confidence 999999999999987752 455 468999999998775
No 44
>KOG2700|consensus
Probab=100.00 E-value=8.6e-38 Score=312.24 Aligned_cols=326 Identities=18% Similarity=0.170 Sum_probs=261.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCC
Q psy3416 5 DLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPL 84 (455)
Q Consensus 5 a~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~l 84 (455)
+-...+|++.+.+.+.|..+++.+...+.+|++++|.||||+|+|+|+|||++.+-|..+|.++++++.+++.++....+
T Consensus 116 adli~~rd~~k~i~~~l~~vIdrls~~~~~~k~~~~~g~Th~q~A~l~tfgkr~~~~~qel~~~l~~f~~~~~~~~~~~~ 195 (481)
T KOG2700|consen 116 ADLIELRDASKLILPYLAGVIDRLSQFADKYKEKPTLGRTHLQPAQLTTFGKRMCLWIQELLRDLERFHRARTDVRFRGL 195 (481)
T ss_pred ccceechhHHHHHHHHHHHHHHHHHHHHHHhccceecccccCccchhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccc
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCc-----Ccch------HHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q psy3416 85 GSAALAGTTH-----HINR------YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQF 153 (455)
Q Consensus 85 Gga~~~G~~~-----~~~~------~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei 153 (455)
+|+.+.-.++ +... +.+++.+||..+..-+ +++.+|+.+.++.+.|+.++++..|+|.|++++++ +
T Consensus 196 kga~gtqasf~~l~~~~~~kv~~ld~Lv~k~~gf~~~~~~T-GQt~sr~~~~~~~~~la~lgat~~k~~Tdirll~~--~ 272 (481)
T KOG2700|consen 196 KGATGTQASFLSLFLGDMDKVEKLDSLVTKELGFVPMYIVT-GQTYSRKTDAEEVAPLASLGATAHKYATDIRLLAK--F 272 (481)
T ss_pred ccchhhHHHHHHhhcccHHHHHHHHHHHHHHhCCCcccccc-CCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 9986321111 1111 2577999999876543 78999999999999999999999999999999998 8
Q ss_pred ceecccCC-CCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHH
Q psy3416 154 NFLTLPES-FLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIV 232 (455)
Q Consensus 154 ~el~~~e~-~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~ 232 (455)
.|++.|.. .+.|||+||+||||+.||.+-..+. .+.++..
T Consensus 273 ~ev~epFea~q~gsSaMp~krNpm~~E~itslar-----~l~~~v~---------------------------------- 313 (481)
T KOG2700|consen 273 AEVEEPFEAHQIGSSAMPYKRNPMRCERITSLAR-----HLRPYVT---------------------------------- 313 (481)
T ss_pred HHhhccccccccccccCCCCCCCchhHHHhHHHH-----HHHHHHH----------------------------------
Confidence 88888754 5899999999999999998732221 1111000
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccc
Q psy3416 233 MHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKL 312 (455)
Q Consensus 233 ~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 312 (455)
..+. .+...|..+ ..++|.||++.||+..+..
T Consensus 314 ~al~---~~~~qw~Er-----------tl~dSa~~rivlP~~Fl~a---------------------------------- 345 (481)
T KOG2700|consen 314 QALN---TASVQWHER-----------TLDDSANRRIVLPDAFLTA---------------------------------- 345 (481)
T ss_pred HHhh---hHHHHHhhc-----------ccccccccceechHHHHHH----------------------------------
Confidence 0000 012234332 4578999999999776553
Q ss_pred hHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHh--ccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHH----HHcCC
Q psy3416 313 PLFDTVDNIIMCLVASGKLIEKATFNEQEMYETA--IKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYC----NEKHK 386 (455)
Q Consensus 313 ~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l--~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a----~~~g~ 386 (455)
+..|....++++++.|.|.+|.+|. +.+++..++++++|+++|.+|++||+.|++++.++ .++|+
T Consensus 346 ---------d~~L~~~~ni~~gl~v~p~~i~r~i~~e~~~~~~eni~mAL~~~g~srq~ahe~I~~L~~~a~~~v~~e~g 416 (481)
T KOG2700|consen 346 ---------DGNLGTLLNILEGLVVYPKVIERNIRDELPFMVLENIIMALVKAGLSRQEAHEGIRKLSHQAAQVVKQEGG 416 (481)
T ss_pred ---------HHHHHHHHHHHhhcccccHHHHHHHHhhhhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4567778889999999999999997 57999999999999999999999999999999988 77888
Q ss_pred CchhhhHHHHhhhhcCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHH
Q psy3416 387 TFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQ 436 (455)
Q Consensus 387 ~~~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~ 436 (455)
++..+.......-...+.+++...|||. .+.|.+++++++++.
T Consensus 417 ~~~~ie~~k~~~~~~~v~ee~~~ll~p~-------~f~gra~dQie~~v~ 459 (481)
T KOG2700|consen 417 DNDLIERAKEDPTFKPVKEELDSLLDPL-------NFTGRAVDQIEKFVP 459 (481)
T ss_pred CcHHHHHhcccccccchHHHHHhhccch-------hcccccHHHHHHHhh
Confidence 8665533221111112346889999998 599999999988776
No 45
>KOG1317|consensus
Probab=99.98 E-value=6.5e-32 Score=259.90 Aligned_cols=305 Identities=19% Similarity=0.243 Sum_probs=228.7
Q ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 2 IVTDLRLYTRKH-IDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 2 ~~ta~~L~lr~~-~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
.+|++.+..-.. ...+++.|..|.++|..++.+++|++.+||||.|+|.|.|+|+.|++|.+.+...++|+..+++|+.
T Consensus 168 FPtamHIa~~~ei~~~L~P~l~~L~~aL~aKs~EfkdIiKIGRTHtqDAvPLTLGQEFsgY~qQ~~ngl~Rv~~~lpr~y 247 (487)
T KOG1317|consen 168 FPTAMHIAAATEINSRLIPALTNLRDALEAKSKEFKDIIKIGRTHTQDAVPLTLGQEFSGYVQQVTNGLQRVAATLPRLY 247 (487)
T ss_pred cchHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhcccccccccccchhhhhhhHHHHHHHHHHHHHhhhhHHH
Confidence 357777765444 4689999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcc-------hHHHHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh-cC
Q psy3416 81 ISPLGSAALAGTTHHIN-------RYLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM-NP 151 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~-------~~~~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~-~~ 151 (455)
....||+++ ||+...- .++++++.||+. ...|-+.+.+.+|.++|+..+|+.++.++.||++|+|++. +|
T Consensus 248 ~LA~GGTAV-GTGLNTr~GFaeK~a~~va~ltgLpFvtApNkFEALAahDA~VE~~GalNt~A~SlmKianDIRfLGSGP 326 (487)
T KOG1317|consen 248 QLAQGGTAV-GTGLNTRKGFAEKIAARVAELTGLPFVTAPNKFEALAAHDAMVEVSGALNTIAVSLMKIANDIRFLGSGP 326 (487)
T ss_pred HHhcCCccc-cccccccccHHHHHHHHHHHHhCCCceecccHHHHHHhhhhHHHhcccHHHHHHHHHHHhhhhhhccCCC
Confidence 999999886 7765432 246888888885 3467789999999999999999999999999999999996 45
Q ss_pred --CcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q psy3416 152 --QFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229 (455)
Q Consensus 152 --ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~ 229 (455)
|+||+.+||. ..|||+||.|.||..||.+...+.-
T Consensus 327 RcGlgEL~LPEN-EPGSSIMPGKVNPTQcEamTmvcaQ------------------------------------------ 363 (487)
T KOG1317|consen 327 RCGLGELMLPEN-EPGSSIMPGKVNPTQCEAMTMVCAQ------------------------------------------ 363 (487)
T ss_pred CCCccccccCCC-CCCcccCCCCCCcHHHHHHHHHHHH------------------------------------------
Confidence 7999988875 6777777777777777765322210
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc
Q psy3416 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE 309 (455)
Q Consensus 230 ~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 309 (455)
+++ +-+.+ ..+||- ++. -++.|+++-
T Consensus 364 -VMG-----------------N~vAv---tvgGsn------------------GhF------ELNVFKP~i--------- 389 (487)
T KOG1317|consen 364 -VMG-----------------NHVAV---TVGGSN------------------GHF------ELNVFKPLI--------- 389 (487)
T ss_pred -Hhc-----------------CceEE---EecccC------------------cee------EEecchHHH---------
Confidence 000 00000 112221 000 012222221
Q ss_pred ccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCc
Q psy3416 310 DKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTF 388 (455)
Q Consensus 310 ~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~ 388 (455)
-..+..++.++.++.-.|+ .|+.+|+.|.+|+.+.+..++++-++|-..+ .|+-..++++.|.++|.++
T Consensus 390 -~~nvL~SirLl~D~~~sF~~nCV~GI~aN~erI~kll~eSLMLVTALNPhI---------GYD~aAkiAKtAhKng~TL 459 (487)
T KOG1317|consen 390 -ASNVLHSIRLLADASVSFTKNCVVGIEANKERIAKLLNESLMLVTALNPHI---------GYDNAAKIAKTAHKNGTTL 459 (487)
T ss_pred -HHHHHHHHHHhhhhhhhhhhhhhhcccCCHHHHHHHHHhhhhhhhccCCcc---------CchhHHHHHHHHhhcCCcH
Confidence 1246677777777777777 7999999999999998888877666543333 5666678888899999998
Q ss_pred hhhhHHHHhhhhcCCchHHHHhcChhhhhh
Q psy3416 389 KDLSLAELKTFHSYISDDIIDILCIENSIK 418 (455)
Q Consensus 389 ~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~ 418 (455)
++-..+. .-..++++.++..|+.++.
T Consensus 460 k~eal~l----G~lTeeqFdewV~Pe~Mlg 485 (487)
T KOG1317|consen 460 KEEALKL----GVLTEEQFDEWVVPEKMLG 485 (487)
T ss_pred HHHHHHh----cCCCHHHHHhhhCHHhccC
Confidence 8755532 2233568899999997553
No 46
>PRK08937 adenylosuccinate lyase; Provisional
Probab=99.97 E-value=3.8e-31 Score=252.39 Aligned_cols=186 Identities=21% Similarity=0.267 Sum_probs=169.8
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccc-cccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccc
Q psy3416 227 TCCLIVMHLSRISEEFIIFMNPQFNFLTLPE-SFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNK 305 (455)
Q Consensus 227 ~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~-~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (455)
+++.++.+++|+++|+.+|++.+++++.+|. .++.|||+|||||||+.+|.+++.++.+.|...+++..+ |.+|+|
T Consensus 22 ~l~~i~~~l~ria~Dl~~~~s~e~gei~~~~~~~~~gSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~---~~~~er 98 (216)
T PRK08937 22 VLALIATSLEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVLRSYLVTALENV---PLWHER 98 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccceeecccccCCCCCccCCCccCcHHHHHHHHHHHHHHHHHHHHHHHh---HHHhcc
Confidence 8999999999999999999999999999995 789999999999999999999999999999999988766 899999
Q ss_pred ccccc---cchHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHH
Q psy3416 306 DLQED---KLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKY 380 (455)
Q Consensus 306 d~~~~---~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~ 380 (455)
|.++. |..+++++..+..++..+..++++++||+++|++|+. .++++++++++.|+++|+|||+||++|+++++.
T Consensus 99 d~~~~~~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~rm~~~~~~~~~~~~a~~l~~~L~~~g~~~~~Ah~~v~~~~~~ 178 (216)
T PRK08937 99 DLSHSSAERIALPDAFLALDYILNRFVNILENLVVFPENIERNLDKTLGFIATERVLLELVEKGMGREEAHELIREKAME 178 (216)
T ss_pred CCchhHHHhhHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHHhcChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 98664 6789999999999999999999999999999999986 499999999999999999999999999999999
Q ss_pred HHHcCCCchhhhHHHHhhhhcCCc-hHHHHhcChhhh
Q psy3416 381 CNEKHKTFKDLSLAELKTFHSYIS-DDIIDILCIENS 416 (455)
Q Consensus 381 a~~~g~~~~e~~~~~~~~~~~~~~-~~l~~~ldp~~~ 416 (455)
+.++|+++.++..++ .++...+. +++..++||+++
T Consensus 179 ~~~~g~~~~~~~~~~-~~~~~~l~~~~l~~~ldp~~~ 214 (216)
T PRK08937 179 AWKNQKDLRELLEAD-ERFTKQLTKEELDELFDPEAF 214 (216)
T ss_pred HHHhCCCHHHHHHhC-hHhHhcCCHHHHHHHhCHHhh
Confidence 999999999988865 33333444 579999999863
No 47
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=99.96 E-value=3e-28 Score=233.91 Aligned_cols=184 Identities=36% Similarity=0.477 Sum_probs=165.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
+.+|+.++++|+++..+.+.+..+..++..+|++|++++||||||+|+|+|+||||++++|.+.|.|+.+||.++
T Consensus 46 ~~~t~~~~~~~~~l~~l~~~l~~~~~~l~~~a~~~~~~~~~~~th~q~A~p~t~g~~~~~~~~~l~~~~~rL~~~----- 120 (231)
T cd01594 46 IGTTALRLALRDALDDLLPLLKALIDALALKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQVLGRDLERLEEA----- 120 (231)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCEeecccccccCccccHHHHHHHHHHHHHHHHHHHHHH-----
Confidence 368999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
+++++++.++.++..++|+++|++.+++.+++++.+|
T Consensus 121 ------------------------------------------~~~~~~~~l~~~~~~l~r~a~d~~~~~~~~~~~~~~~- 157 (231)
T cd01594 121 ------------------------------------------AVAEALDALALAAAHLSKIAEDLRLLLSGEFGELGEP- 157 (231)
T ss_pred ------------------------------------------HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCc-
Confidence 6788888888888888888888887777766654322
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
T Consensus 158 -------------------------------------------------------------------------------- 157 (231)
T cd01594 158 -------------------------------------------------------------------------------- 157 (231)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhcccccccccccc-ccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPES-FLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVD 319 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~-~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~ 319 (455)
.. ...|||+||||+||+.+|+++..+..+.|....++....+.+..++.|++..+..+++.+.
T Consensus 158 ----------------~~~~~~gSS~mp~k~Np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 221 (231)
T cd01594 158 ----------------FLPGQPGSSIMPQKVNPVAAELVRGLAGLVIGNLVAVLTALKGGPERDNEDSPSMREILADSLL 221 (231)
T ss_pred ----------------cCCCCCCCcCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHhcccccccccCHHHHHHHHHHHH
Confidence 22 4689999999999999999999999999999999998888888999999999999999999
Q ss_pred HHHHHHHHH
Q psy3416 320 NIIMCLVAS 328 (455)
Q Consensus 320 ~~~~~l~~~ 328 (455)
.+.+++..+
T Consensus 222 ~~~~~l~~~ 230 (231)
T cd01594 222 LLIDALRLL 230 (231)
T ss_pred HHHHHHHHh
Confidence 888887765
No 48
>PF00206 Lyase_1: Lyase; InterPro: IPR022761 This entry represents the N-terminal region of lyase-1 family; PDB: 1DOF_C 1K62_B 1AOS_B 2VD6_D 2J91_B 1C3U_B 1C3C_A 3R6Y_C 3R6V_F 3R6Q_F ....
Probab=99.83 E-value=3.9e-20 Score=186.07 Aligned_cols=204 Identities=25% Similarity=0.295 Sum_probs=147.0
Q ss_pred HhcCcccccccccCccccchHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCC
Q psy3416 34 KHAKTIMPGFTHFQIAQPISLGHYLLAYA-SMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSE 112 (455)
Q Consensus 34 ~~~~tvm~grTh~Q~A~P~T~G~~la~~~-~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~ 112 (455)
+....+..|+| .||..+|.+..++.... ..|...+.+|.+.+..... .....++.|.++..+- .|.
T Consensus 100 ~~~~~vH~G~T-s~Di~~Ta~~l~lr~~~~~~l~~~l~~l~~~L~~~a~-~~~~t~~~grTh~Q~A----------~P~- 166 (312)
T PF00206_consen 100 EAGGWVHYGRT-SNDIVDTALRLQLRDALLELLLERLKALIDALAELAE-EHKDTPMPGRTHGQPA----------QPT- 166 (312)
T ss_dssp GGGGGTTTT---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTSEEEEEETTEEE----------EEE-
T ss_pred cccccccCCCc-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-hhcCceeccccccccc----------cce-
Confidence 77888999999 99999999999999877 6588888888777776654 4555555565544320 111
Q ss_pred CchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhccccc
Q psy3416 113 NSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHH 192 (455)
Q Consensus 113 n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~ 192 (455)
+++ ..++.+...+.-.+.|+.+-...+..- |- .+++..||+++
T Consensus 167 -T~G--------~~~a~~~~~l~r~~~rL~~~~~~~~~~-------~l---------------------gga~g~gt~~~ 209 (312)
T PF00206_consen 167 -TFG--------HKLAAWADELARDLERLEEARKRLNVS-------PL---------------------GGAVGAGTSLG 209 (312)
T ss_dssp -EHH--------HHHHHHHHHHHHHHHHHHHHHHHHHEE-------ET---------------------TTTTTTSSHTT
T ss_pred -eHH--------HHHHHHHHHHHHHHHHHHHhHhHHHHH-------hc---------------------cCCCccccccc
Confidence 111 122223333333344443322111110 10 02334556666
Q ss_pred chhh---HHHhhhc-CCC---CCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccc-cCc
Q psy3416 193 INRY---LTAKLLD-FEK---PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLT-GSS 264 (455)
Q Consensus 193 ~~~~---~~a~~l~-~~~---~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~-~SS 264 (455)
.++. .++..|+ |.. +..|+.+++++||++++++++++.++.+++|||+|+++|+++|++++++|..... |||
T Consensus 210 ~~~~~~~~~~~~L~~~~~l~~~~~~~~~~~~~rd~~~e~~~~l~~l~~~l~kia~Dl~~~~s~e~g~~~~~~~~~~~GSS 289 (312)
T PF00206_consen 210 IDREFQERVAEELGEFTGLGVPAPNWHDAVSSRDRLAELASALALLAGTLSKIAEDLRLLSSTEIGEVEEPFPEGQVGSS 289 (312)
T ss_dssp SHHHHHHHHHHHHHHHHCSTEECSSHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTSSEEEEGGGSSSCSS
T ss_pred cCcchhhhHHhhhhhhhhcccchhhcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCceeeeecccccccCCCc
Confidence 6665 5666666 555 8999999999999999999999999999999999999999999999999988877 999
Q ss_pred cCccccChhHHHHHHhhhhhhhh
Q psy3416 265 IMPQKKNPDVLELIRGKTGRIYA 287 (455)
Q Consensus 265 ~mp~K~np~~~e~~~~~~~~~~~ 287 (455)
+|||||||+.+|+++++++++.|
T Consensus 290 ~MP~K~NP~~~E~i~~~a~~v~G 312 (312)
T PF00206_consen 290 IMPHKRNPVILENIRGLARQVIG 312 (312)
T ss_dssp SSTTCEETHHHHHHHHHHHHHHH
T ss_pred cCCCCCCCHHHHHHHHhhhcCcC
Confidence 99999999999999999998875
No 49
>PF14698 ASL_C2: Argininosuccinate lyase C-terminal; PDB: 1XWO_A 2E9F_A 1TJW_C 1TJU_A 1DCN_B 1K7W_B 1HY1_C 1TJV_B 1AUW_A 1U15_B ....
Probab=99.45 E-value=1.5e-13 Score=107.64 Aligned_cols=69 Identities=41% Similarity=0.748 Sum_probs=59.9
Q ss_pred HhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhhcCCchHHHHhcChhhhhh
Q psy3416 350 FSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIK 418 (455)
Q Consensus 350 ~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~ 418 (455)
|+++|++|++|+++|+|||+||++|+++|+.|.+.|+++.++..++..++...+++++.++|||+++|+
T Consensus 1 f~~ATdlAD~LVr~GipFR~AH~iVg~~V~~a~~~~~~l~~l~~~~~~~~~~~~~~~~~~~l~~~~~V~ 69 (70)
T PF14698_consen 1 FSTATDLADYLVRKGIPFREAHHIVGRLVRLAEEEGKPLSELTLEELQEISPEFEEDVREALDPEASVE 69 (70)
T ss_dssp TGGHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHTTS-GGGS-HHHHHHH-TT--GGGGGGSSHHHHHT
T ss_pred CccHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCChhhCCHHHHHHHhHHhHHHHHHHCCHHHHhc
Confidence 578999999999999999999999999999999999999999999988888888899999999999886
No 50
>PRK08937 adenylosuccinate lyase; Provisional
Probab=99.29 E-value=8.5e-12 Score=119.06 Aligned_cols=57 Identities=25% Similarity=0.281 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHHHHHhhhcCCcceecccC-CCCccccccCCCCCcchHHHHHHHHh
Q psy3416 130 TCCLIVMHLSRISEEFIIFMNPQFNFLTLPE-SFLTGSSIMPQKKNPDVKDLRQRAAL 186 (455)
Q Consensus 130 ~l~~la~~l~kia~Dl~~l~~~ei~el~~~e-~~~~gSStMP~K~NP~~~e~~~~~~~ 186 (455)
+++.++.+++|+|+|+++|+++|+||+.+|. .+++|||+||||+||+.+|.+.+.+.
T Consensus 22 ~l~~i~~~l~ria~Dl~~~~s~e~gei~~~~~~~~~gSSiMP~K~NP~~~E~i~~~a~ 79 (216)
T PRK08937 22 VLALIATSLEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLAR 79 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccceeecccccCCCCCccCCCccCcHHHHHHHHHHH
Confidence 8999999999999999999999999999996 67899999999999999998875544
No 51
>COG0015 PurB Adenylosuccinate lyase [Nucleotide transport and metabolism]
Probab=99.26 E-value=2.4e-11 Score=125.71 Aligned_cols=222 Identities=17% Similarity=0.167 Sum_probs=146.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccc
Q psy3416 10 TRKHIDIIIELLLTMIKHLTDLSD-KHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAA 88 (455)
Q Consensus 10 lr~~~~~l~~~l~~l~~~L~~~A~-~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~ 88 (455)
+++.-....-++..+...|.+.+. +....|+-|-| .||-..|.+...+-.-.+.+..++.+|.+.+..+.. .....+
T Consensus 62 i~eie~~t~HdV~a~v~~l~e~~~~~~~~~VH~GaT-S~DI~Dta~~L~lk~a~~ii~~~l~~l~~~L~~~A~-~~k~t~ 139 (438)
T COG0015 62 IKEIEAETGHDVKALVRALAEKVGEEASEYVHFGAT-SQDIIDTALALQLKEALDLILPDLKRLIEALAELAL-EHKDTP 139 (438)
T ss_pred HHHHHHHhCCCcHHHHHHHHHhcCcccccceecccc-hHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCe
Confidence 344444555667788888888887 77788999999 999999999999999999999999999888887765 567777
Q ss_pred cCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccc
Q psy3416 89 LAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSI 168 (455)
Q Consensus 89 ~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSSt 168 (455)
+.|+++.+. ...-.+|++. +.|+..+.-.+.++.+-..... .+. +. +..|.-..
T Consensus 140 m~GRTHgq~--A~PtT~G~k~------------------A~w~~el~R~~~rL~~~~~~~~---~g~--i~-Ga~Gt~Aa 193 (438)
T COG0015 140 MLGRTHGQP--AEPTTFGKKF------------------ANWLAELLRHLERLEEAEERII---VGK--IG-GAVGTLAA 193 (438)
T ss_pred ecccccCCC--CccchHHHHH------------------HHHHHHHHHHHHHHHHHHhhhh---hhc--cc-cchhhHhh
Confidence 778877653 1112223321 1122222222222211000000 000 00 00011122
Q ss_pred cCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3416 169 MPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNP 248 (455)
Q Consensus 169 MP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~ 248 (455)
+|.+- .-...+++..|||...+.- .++.+||+..+|++.++++++.+.||+.|++++++.
T Consensus 194 ~~~~~------------------~~ve~~v~e~LGL~~~p~s--tq~~~RD~~ae~~~~La~i~~sl~k~a~dIr~l~~~ 253 (438)
T COG0015 194 LGDLG------------------AEVEERVAEKLGLKPAPIS--TQVSPRDRIAEFFSALALLAGSLEKFARDIRLLQRT 253 (438)
T ss_pred cCchh------------------HHHHHHHHHHcCCCCCCCC--cccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22221 1113456788999843332 299999999999999999999999999999999998
Q ss_pred cccccccc-ccccccCccCccccChhHHHHHH
Q psy3416 249 QFNFLTLP-ESFLTGSSIMPQKKNPDVLELIR 279 (455)
Q Consensus 249 ~~~~~~lp-~~~~~~SS~mp~K~np~~~e~~~ 279 (455)
++.++.=| ...+.|||+|||||||..+|.+.
T Consensus 254 e~~Ev~E~f~~gq~GSSaMPHKrNPi~~E~~~ 285 (438)
T COG0015 254 EVGEVEEPFAKGQVGSSAMPHKRNPIDSENVT 285 (438)
T ss_pred cccccccccCCCCCCCCCCCcccCcHHHHHHH
Confidence 76543211 13589999999999999999876
No 52
>PF10397 ADSL_C: Adenylosuccinate lyase C-terminus; InterPro: IPR019468 Adenylosuccinate lyase catalyses two steps in the synthesis of purine nucleotides: the conversion of succinylaminoimidazole-carboxamide ribotide into aminoimidazole-carboxamide ribotide (the fifth step of de novo IMP biosynthesis); the formation of adenosine monophosphate (AMP) from adenylosuccinate (the final step in the synthesis of AMP from IMP) []. This entry represents the C-terminal, seven alpha-helical, domain of adenylosuccinate lyase [].; PDB: 1YIS_A 1C3U_B 1C3C_A 3C8T_A 2PFM_B 1RE5_D 1Q5N_A 2VD6_D 2J91_B 2X75_A.
Probab=99.22 E-value=2.2e-11 Score=98.35 Aligned_cols=80 Identities=23% Similarity=0.331 Sum_probs=70.7
Q ss_pred cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhhcCCc-hHHHHhcChhhhhhhhccCCCC
Q psy3416 348 KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYIS-DDIIDILCIENSIKFKNHIGGT 426 (455)
Q Consensus 348 ~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~~~~~-~~l~~~ldp~~~v~~~~~~~G~ 426 (455)
+|+++||.++..|+++|+++++||++|.+++++|.++|.+|.|.+.++ +.+..+++ +++..+|||. .|.|.
T Consensus 1 ~Gli~SE~v~~~L~~~G~gR~~Ah~lv~~~a~~a~~~~~~l~e~l~~d-~~i~~~ls~~el~~l~dp~-------~ylg~ 72 (81)
T PF10397_consen 1 GGLIFSERVMLALAEKGLGRQEAHELVQEAAMEAWENGRDLREVLLAD-PEIAAYLSEEELEELFDPE-------SYLGN 72 (81)
T ss_dssp TTGGGHHHHHHHHHHTTH-HHHHHHHHHHHHHHHHHTTS-HHHHHCTT-HHHHTTSHHHHHHHHT-GG-------GGCTT
T ss_pred CcchHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHCCCHHHHHHCC-HHHHhHCCHHHHHhhcCHH-------HHHhh
Confidence 589999999999999999999999999999999999999999998865 67888887 5899999998 59999
Q ss_pred cHHHHHHHH
Q psy3416 427 SPEQVKITV 435 (455)
Q Consensus 427 a~~~v~~~l 435 (455)
+++++++++
T Consensus 73 ~~~i~~rv~ 81 (81)
T PF10397_consen 73 ADEIVDRVL 81 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHC
Confidence 999999875
No 53
>TIGR00838 argH argininosuccinate lyase. This model describes argininosuccinate lyase, but may include examples of avian delta crystallins, in which argininosuccinate lyase activity may or may not be present and the biological role is to provide the optically clear cellular protein of the eye lens.
Probab=99.14 E-value=7.1e-09 Score=109.71 Aligned_cols=167 Identities=26% Similarity=0.389 Sum_probs=117.6
Q ss_pred hcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCc
Q psy3416 35 HAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENS 114 (455)
Q Consensus 35 ~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~ 114 (455)
....++.||| .||..||.+-.++......+.+.+..|.+.+..... .....++.|.++..+- ..-.+|++
T Consensus 97 ~g~~iH~g~S-rnD~~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~-~~~~~~m~grTH~Q~A--~P~T~G~~------ 166 (455)
T TIGR00838 97 LGGKLHTGRS-RNDQVATDLRLYLRDHVLELAEALLDLQDALIELAE-KHVETLMPGYTHLQRA--QPITLAHH------ 166 (455)
T ss_pred ccCCccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCEeecccccccc--eeccHHHH------
Confidence 3446899999 999999999999998888899999998888877764 4556666676654431 10111111
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccch
Q psy3416 115 LDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHIN 194 (455)
Q Consensus 115 ~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~ 194 (455)
+..+...+.-.+.|+..=.. .+.. .| +.+++.+||+++++
T Consensus 167 ------------~~~~~~~L~r~~~rL~~~~~-----~~~~--~p---------------------lGg~a~aGt~~~~~ 206 (455)
T TIGR00838 167 ------------LLAYAEMLLRDYERLQDALK-----RVNV--SP---------------------LGSGALAGTGFPID 206 (455)
T ss_pred ------------HHHHHHHHHHHHHHHHHHHH-----Hhcc--CC---------------------cchhcccCCCCCCC
Confidence 11122222222222211110 0111 01 01235568888999
Q ss_pred hhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy3416 195 RYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFN 251 (455)
Q Consensus 195 ~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~ 251 (455)
+.+++..|||..+..|+++++++||++++++.+++.++.+|+|||+|+++|+++|++
T Consensus 207 r~~~a~~LG~~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~ria~Dl~l~ss~e~g 263 (455)
T TIGR00838 207 REYLAELLGFDAVTENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLILWSTGEFG 263 (455)
T ss_pred HHHHHHHcCCCCCcCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence 999999999999999999999999999999999999999999999999999998865
No 54
>PRK00855 argininosuccinate lyase; Provisional
Probab=99.07 E-value=3.3e-09 Score=112.28 Aligned_cols=178 Identities=28% Similarity=0.385 Sum_probs=124.8
Q ss_pred HHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhc
Q psy3416 26 KHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLL 105 (455)
Q Consensus 26 ~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~L 105 (455)
..|.++..+....++.||| .||..||.+-.++......+.+.+.+|.+.+..... ......+.|.++..+- ..-.+
T Consensus 92 ~~l~~~~g~~g~~iH~g~S-rnD~~~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~-~~~~t~m~GrTH~Q~A--~P~T~ 167 (459)
T PRK00855 92 ARLTERIGDVGGKLHTGRS-RNDQVATDLRLYLRDEIDEIAELLLELQKALLDLAE-EHADTIMPGYTHLQRA--QPVTF 167 (459)
T ss_pred HHHHHHhccccCcccCCCC-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCEeecCcCCccc--eeecH
Confidence 3344444444556999999 999999999999999889999999998888877765 4566676677654431 11111
Q ss_pred CCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHH
Q psy3416 106 DFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAA 185 (455)
Q Consensus 106 G~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~ 185 (455)
|++ +..+...+.-.+.|+..=...+. . .| +.+++
T Consensus 168 G~~------------------l~~~~~~L~r~~~rL~~~~~~~~-----~--~p---------------------lGgaa 201 (459)
T PRK00855 168 GHH------------------LLAYAEMLARDLERLRDARKRVN-----R--SP---------------------LGSAA 201 (459)
T ss_pred HHH------------------HHHHHHHHHHHHHHHHHHHHHHh-----h--cC---------------------cchhh
Confidence 111 11111112222222211111100 0 01 11234
Q ss_pred hhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3416 186 LAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 253 (455)
Q Consensus 186 ~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~ 253 (455)
.+||++++++.+++..|||..+..|+++++++||++.+++++++.++.+|+|||+|+++|++++++++
T Consensus 202 g~gt~~~~~r~~~a~~LG~~~~~~n~~~a~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~ss~e~gei 269 (459)
T PRK00855 202 LAGTTFPIDRERTAELLGFDGVTENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELILWSSQEFGFV 269 (459)
T ss_pred hcCCCCCcCHHHHHHHcCCCCCCCCHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCCCeE
Confidence 46889999999999999999999999999999999999999999999999999999999999987764
No 55
>cd01334 Lyase_I Lyase class I family; a group of proteins which catalyze similar beta-elimination reactions. The Lyase class I family contains class II fumarase, aspartase, adenylosuccinate lyase (ASL), argininosuccinate lyase (ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. It belongs to the Lyase_I superfamily. Proteins of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits.
Probab=99.04 E-value=1e-08 Score=104.02 Aligned_cols=183 Identities=21% Similarity=0.297 Sum_probs=127.0
Q ss_pred HHHHHHHHHHHHHHh-cCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchH
Q psy3416 21 LLTMIKHLTDLSDKH-AKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY 99 (455)
Q Consensus 21 l~~l~~~L~~~A~~~-~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~ 99 (455)
...+.+.|.++..+. .+.++.||| .||-.+|.+-.++......+...+.+|.+.+..... ......+.|.++..+
T Consensus 55 ~~~~e~~l~~~~g~~~~~~lH~G~S-~nDi~~ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~-~~~~t~m~grTH~Q~-- 130 (325)
T cd01334 55 VMAVEEVLAERAGELNGGYVHTGRS-SNDIVDTALRLALRDALDILLPALKALIDALAAKAE-EHKDTVMPGRTHLQD-- 130 (325)
T ss_pred HHHHHHHHHHHhccccCCCCccCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCcEeeccccccc--
Confidence 445566677777766 888999999 999999999999998888999999998877776654 356666667765443
Q ss_pred HHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHH
Q psy3416 100 LTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKD 179 (455)
Q Consensus 100 ~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e 179 (455)
...-.+|+. +..+...+...+.|+.+=...+-. .|-+
T Consensus 131 A~P~T~G~~------------------~~~~~~~l~r~~~rL~~~~~~~~~-------~~lG------------------ 167 (325)
T cd01334 131 AQPTTLGHE------------------LAAWAAELERDLERLEEALKRLNV-------LPLG------------------ 167 (325)
T ss_pred CccccHHHH------------------HHHHHHHHHHHHHHHHHHHHHhhh-------cCCc------------------
Confidence 111111211 111222222222222211111100 0111
Q ss_pred HHHHHHhhcccc--cchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3416 180 LRQRAALAGTTH--HINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 253 (455)
Q Consensus 180 ~~~~~~~~gt~~--~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~ 253 (455)
+++..|+.+ +.++.+++..|||.++.+|+.+++++||++.+++.+++.++.+++|||+|+++|++++++++
T Consensus 168 ---~gA~g~~~~~~~~~~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~~~e~gev 240 (325)
T cd01334 168 ---GGAVGTGANAPPIDRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIANDLRLLSSGEFGEV 240 (325)
T ss_pred ---HhHHhCcCCCCcchHHHHHHHhcCcCcCcCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeE
Confidence 123333345 67778889999998899999999999999999999999999999999999999999988865
No 56
>KOG1316|consensus
Probab=99.03 E-value=2.9e-10 Score=111.69 Aligned_cols=63 Identities=48% Similarity=0.873 Sum_probs=61.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHH
Q psy3416 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQR 183 (455)
Q Consensus 121 Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~ 183 (455)
||+++|+..|.++.+..++|+|+|+.+++..|+|.+++.+.+..|||+||||+||...|++.+
T Consensus 236 RDFVvef~fw~sm~m~HlSRlaEdlIiy~t~EF~Fv~lSDaySTGSSlMPQKKNpDslELlRg 298 (464)
T KOG1316|consen 236 RDFVVEFLFWASMVMTHLSRLAEDLIIYSTKEFGFVTLSDAYSTGSSLMPQKKNPDSLELLRG 298 (464)
T ss_pred chhHHHHHHHHHHHHHHHHHHhhHhheeeccccCceeeccccccCcccCCCCCCCCHHHHhcc
Confidence 999999999999999999999999999999999999999999999999999999999998864
No 57
>PRK02186 argininosuccinate lyase; Provisional
Probab=98.99 E-value=7.9e-09 Score=117.79 Aligned_cols=179 Identities=19% Similarity=0.160 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHHH-HhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchH
Q psy3416 21 LLTMIKHLTDLSD-KHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY 99 (455)
Q Consensus 21 l~~l~~~L~~~A~-~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~ 99 (455)
...+.+.|.++.. +....++.||| .||-.+|.+-.++......+.+.+.+|...+..... ......+.|.++...-
T Consensus 491 ~~~~e~~L~~~~g~~~~~~lH~grS-rnD~v~T~~~l~lr~~~~~l~~~l~~l~~~L~~~A~-~~~~~~m~g~TH~Q~A- 567 (887)
T PRK02186 491 YMLYEAYLIERLGEDVGGVLQTARS-RNDINATTTKLHLREATSRAFDALWRLRRALVFKAS-ANVDCALPIYSQYQPA- 567 (887)
T ss_pred HHHHHHHHHHHhChhhhcccCcccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCEeecCccCCcc-
Confidence 3455666777766 56788999999 999999999999999999999999998888877764 3455566676654431
Q ss_pred HHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHH
Q psy3416 100 LTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKD 179 (455)
Q Consensus 100 ~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e 179 (455)
..-.+|+. +..+...+.-.+.|+..=...+ ... |
T Consensus 568 -~P~T~G~~------------------~~~~~~~l~r~~~rl~~~~~r~-----~~~--p-------------------- 601 (887)
T PRK02186 568 -LPGSLGHY------------------LLAVDGALARETHALFALFEHI-----DVC--P-------------------- 601 (887)
T ss_pred -ccccHHHH------------------HHHHHHHHHHHHHHHHHHHHHh-----CcC--C--------------------
Confidence 11111111 1122222222222222111111 110 1
Q ss_pred HHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3416 180 LRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 249 (455)
Q Consensus 180 ~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~ 249 (455)
+.+++.+||++++++.+++..|||..+..|+++++++||++.++++.+++++.+|+|||+|+++|++.+
T Consensus 602 -lG~aag~gt~~~~~~~~~a~~LGf~~~~~n~~da~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~~~e 670 (887)
T PRK02186 602 -LGAGAGGGTTFPIDPEFVARLLGFEQPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQLWTTRE 670 (887)
T ss_pred -cccccccCCCCCCCHHHHHHHcCCCCCccCHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 113455788889999999999999999999999999999999999999999999999999999999854
No 58
>cd01359 Argininosuccinate_lyase Argininosuccinate lyase (argininosuccinase, ASAL). This group contains ASAL and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASAL is a cytosolic enzyme which catalyzes the reversible breakdown of argininosuccinate to arginine and fumarate during arginine biosynthesis. In ureotelic species ASAL also catalyzes a reaction involved in the production of urea. Included in this group are the major soluble avian eye lens proteins from duck, delta 1 and delta 2 crystallin. Of these two isoforms only delta 2 has retained ASAL activity. These crystallins may have evolved by, gene recruitment of ASAL followed by gene duplication.
Probab=98.98 E-value=1.5e-08 Score=106.61 Aligned_cols=183 Identities=28% Similarity=0.405 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHH
Q psy3416 24 MIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAK 103 (455)
Q Consensus 24 l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~ 103 (455)
+.+.|.++..+....++.|+| .||..||.+-.++......+.+.+.+|.+.+..... .....++.|.++..+ ...-
T Consensus 66 ~e~~l~~~~g~~~~~iH~G~S-snDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~-~~~~t~m~grTh~Q~--A~P~ 141 (435)
T cd01359 66 IERRLIERIGDVGGKLHTGRS-RNDQVATDLRLYLRDALLELLELLLDLQRALLDRAE-EHADTIMPGYTHLQR--AQPI 141 (435)
T ss_pred HHHHHHHHHHHHHhhhhccCC-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCEecCCCCCcc--ceec
Confidence 334444444444556999999 999999999999999999999999998888877764 455566666665443 1111
Q ss_pred hcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHH
Q psy3416 104 LLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQR 183 (455)
Q Consensus 104 ~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~ 183 (455)
.+|+. +..+...+...+.++..=...+-. .|- .+
T Consensus 142 T~G~~------------------~~~~~~~l~r~~~rL~~~~~~~~~-------~~l---------------------Gg 175 (435)
T cd01359 142 TFGHY------------------LLAYAEMLERDLERLADAYKRVNV-------SPL---------------------GA 175 (435)
T ss_pred cHHHH------------------HHHHHHHHHHHHHHHHHHHHHhCc-------CCc---------------------cc
Confidence 11111 122222222222222211111110 010 12
Q ss_pred HHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q psy3416 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP 256 (455)
Q Consensus 184 ~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp 256 (455)
++..||++++++.+++..|||..+..|+++++.+||++.+++++++.++.+++||++|+++|+++|++++.+|
T Consensus 176 aag~gt~~~~~~~~~a~~LG~~~~~~~~~~a~~~rd~~~e~~~~l~~~a~~l~ria~Dl~l~~~~e~gev~lp 248 (435)
T cd01359 176 GALAGTTFPIDRERTAELLGFDGPTENSLDAVSDRDFVLEFLSAAALLMVHLSRLAEDLILWSTQEFGFVELP 248 (435)
T ss_pred ccccCCCCCCCHHHHHHHcCCCCCccCHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCeeeCC
Confidence 3445778888999999999999999999999999999999999999999999999999999999999998877
No 59
>COG0165 ArgH Argininosuccinate lyase [Amino acid transport and metabolism]
Probab=98.96 E-value=3.2e-09 Score=109.93 Aligned_cols=47 Identities=57% Similarity=1.031 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHH
Q psy3416 137 HLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQR 183 (455)
Q Consensus 137 ~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~ 183 (455)
.|+|+|+|+.+|+++|+|.+++|..+..|||+||||+||+.+|++.+
T Consensus 249 ~LSRlaedlI~wss~EfgfI~l~D~~sTGSSIMPQKKNPD~~ELiRg 295 (459)
T COG0165 249 HLSRLAEDLILWSSPEFGFIELPDEFSTGSSIMPQKKNPDVLELIRG 295 (459)
T ss_pred HHHHHHHHHHHHccccCceEeCCcccccccccCCCCCCCcHHHHHHH
Confidence 36799999999999999999999999999999999999999999874
No 60
>PLN02646 argininosuccinate lyase
Probab=98.93 E-value=1.8e-09 Score=114.53 Aligned_cols=53 Identities=28% Similarity=0.205 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHh
Q psy3416 127 FISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAAL 186 (455)
Q Consensus 127 ~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~ 186 (455)
++..|.-++.-+--++..= -.++.+ |..+++|||+||||+||+.+|.+.+.+.
T Consensus 259 ia~~LsRia~Dl~l~ss~e----~g~v~~---~d~~~~GSSiMPqKrNP~~~E~ir~~a~ 311 (474)
T PLN02646 259 TAIHLSRLGEEWVLWASEE----FGFVTP---SDAVSTGSSIMPQKKNPDPMELVRGKSA 311 (474)
T ss_pred HHHHHHHHHHHHHHHcCCC----CCeeee---CCCCCCCcCCCCCCCCCHHHHHHHHHHH
Confidence 3444455555554444321 123344 3467899999999999999999876554
No 61
>PRK06705 argininosuccinate lyase; Provisional
Probab=98.89 E-value=2.8e-09 Score=113.79 Aligned_cols=56 Identities=18% Similarity=0.345 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHh
Q psy3416 124 VIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAAL 186 (455)
Q Consensus 124 ~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~ 186 (455)
+.-++..|.-++.-+- +|+++|+|.+++|+++.+|||+||||+||+.+|.+.+.+.
T Consensus 249 la~~~~~L~Ria~Dl~-------~~ss~e~g~iel~e~~~~gSSiMPqKrNP~~~E~ir~~a~ 304 (502)
T PRK06705 249 LMVMMTNTSRWIHDFL-------LLATKEYDGITVARPYVQISSIMPQKRNPVSIEHARAITS 304 (502)
T ss_pred HHHHHHHHHHHHHHHH-------HHcCCCCCeeeecCCCCCccCCCCCCcCCHHHHHHHHHHH
Confidence 3445556666666665 6789999988899999999999999999999999875544
No 62
>PRK04833 argininosuccinate lyase; Provisional
Probab=98.85 E-value=4.9e-09 Score=110.80 Aligned_cols=54 Identities=28% Similarity=0.319 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHh
Q psy3416 126 EFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAAL 186 (455)
Q Consensus 126 e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~ 186 (455)
-++..|.-++.-+.-++..= +|.+++|+.+++|||+||||+||+.+|.+.+.+.
T Consensus 244 ~~a~~L~ria~Dl~l~ss~e-------~g~~el~~~~~~gSSiMPqKrNP~~~E~ir~~a~ 297 (455)
T PRK04833 244 ISMVHLSRFAEDLIFFNSGE-------AGFVELSDRVTSGSSLMPQKKNPDALELIRGKCG 297 (455)
T ss_pred HHHHHHHHHHHHHHHHhCCC-------CCceeeCCCCCCCcccCCCCCCChHHHHHHHHHH
Confidence 33444555555554444321 4555678888999999999999999998875543
No 63
>PRK00485 fumC fumarate hydratase; Reviewed
Probab=98.84 E-value=5e-09 Score=110.96 Aligned_cols=132 Identities=11% Similarity=0.053 Sum_probs=102.2
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCC--CC----ccccccCCCCCcch--HHH----HHHHHhh
Q psy3416 121 RDFV-IEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPES--FL----TGSSIMPQKKNPDV--KDL----RQRAALA 187 (455)
Q Consensus 121 Rd~~-~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~--~~----~gSStMP~K~NP~~--~e~----~~~~~~~ 187 (455)
|+.+ ..+...+..+...|.++|++.....+++++|.+...+ |+ +....+-.-+.... .+. ..|++++
T Consensus 153 r~~l~~~l~~~l~~l~~~L~~~A~~~~dt~m~GrTH~Q~A~PiTfG~~~~~~~~~l~R~~~RL~~~~~r~~~~pLGg~Av 232 (464)
T PRK00485 153 VLAIVERLLPALEHLRDTLAAKAEEFADIVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERIEAALPHLYELALGGTAV 232 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeeeeecCcCceeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 7777 6888999999999999999999999999999977443 22 11111111111000 011 1144457
Q ss_pred cccccchhhH-------HHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---ccc
Q psy3416 188 GTTHHINRYL-------TAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ---FNF 252 (455)
Q Consensus 188 gt~~~~~~~~-------~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~---~~~ 252 (455)
||++++++.+ ++..|||. ++..|+++++++||+++++++++++++.+|+|||+|+++|+|+| +++
T Consensus 233 GT~~~~~~~~~~~v~~~~A~~LGl~~~~~~n~~da~~~rD~~~e~~~~la~la~~L~ria~Dl~l~ss~~~~e~ge 308 (464)
T PRK00485 233 GTGLNAHPGFAERVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLASGPRCGLGE 308 (464)
T ss_pred cCCccCChhHHHHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCCce
Confidence 9999999874 89999999 88999999999999999999999999999999999999999763 654
No 64
>PRK12308 bifunctional argininosuccinate lyase/N-acetylglutamate synthase; Provisional
Probab=98.81 E-value=7e-09 Score=113.69 Aligned_cols=30 Identities=43% Similarity=0.647 Sum_probs=25.2
Q ss_pred cccCCCCccccccCCCCCcchHHHHHHHHh
Q psy3416 157 TLPESFLTGSSIMPQKKNPDVKDLRQRAAL 186 (455)
Q Consensus 157 ~~~e~~~~gSStMP~K~NP~~~e~~~~~~~ 186 (455)
++++.+++|||+||||+||+.+|.+.+.+.
T Consensus 268 el~~~~~~gSSiMPqK~NP~~~E~i~~~a~ 297 (614)
T PRK12308 268 ELADTVTSGSSLMPQKKNPDALELIRGKTG 297 (614)
T ss_pred EeCccCCCccccCcCccCCcHHHHHHHHHH
Confidence 356778899999999999999998875544
No 65
>PRK06389 argininosuccinate lyase; Provisional
Probab=98.81 E-value=9.3e-09 Score=107.09 Aligned_cols=54 Identities=33% Similarity=0.559 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHh
Q psy3416 124 VIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAAL 186 (455)
Q Consensus 124 ~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~ 186 (455)
+.-++..|.-++.-+- +|+++ +++++|+.+++|||+||||+||+.+|.+.+.+.
T Consensus 237 la~la~~LsRiA~Dl~-------l~ss~--g~ielpd~~~~GSSiMPqKrNP~~~E~ir~~a~ 290 (434)
T PRK06389 237 ISSLAVDLSRICQDII-------IYYEN--GIITIPDEFTTGSSLMPNKRNPDYLELFQGIAA 290 (434)
T ss_pred HHHHHHHHHHHHHHHH-------HHcCC--CEEEecCCCCCCCCCCCCCcCcHHHHHHHHHHH
Confidence 4445556666666665 24444 777889999999999999999999999876554
No 66
>cd01595 Adenylsuccinate_lyase_like Adenylsuccinate lyase (ASL)_like. This group contains ASL, prokaryotic-type 3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and related proteins. These proteins are members of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). pCMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone, in the beta-ketoadipate pathway. ASL deficiency has been linked t
Probab=98.79 E-value=2.8e-07 Score=95.54 Aligned_cols=188 Identities=18% Similarity=0.208 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHH-hcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchH
Q psy3416 21 LLTMIKHLTDLSDK-HAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY 99 (455)
Q Consensus 21 l~~l~~~L~~~A~~-~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~ 99 (455)
+..+...|.++..+ ....++.||| .||-.+|.+-.++......+...+.+|.+.+..... ......+.|.++..+
T Consensus 64 v~~~e~~L~~~~g~~~~~~vH~g~S-~nDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~-~~~dt~m~grTH~Q~-- 139 (381)
T cd01595 64 VIAFVYALAEKCGEDAGEYVHFGAT-SQDINDTALALQLRDALDIILPDLDALIDALAKLAL-EHKDTPMLGRTHGQH-- 139 (381)
T ss_pred cHHHHHHHHHHhhhHhhhHeecCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHcCChHHhhcCCCC--
Confidence 35555666666665 5777999999 999999999999998888888888888877776654 334444555554332
Q ss_pred HHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHH
Q psy3416 100 LTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKD 179 (455)
Q Consensus 100 ~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e 179 (455)
...-.+|++ +..+...+.-.+.|+..=.. .+.. .|-+
T Consensus 140 A~P~T~G~~------------------~~~~~~~L~r~~~rL~~~~~-----~~~~--~~lG------------------ 176 (381)
T cd01595 140 ALPTTFGKK------------------FAVWAAELLRHLERLEEARE-----RVLV--GGIS------------------ 176 (381)
T ss_pred CcchhHHHH------------------HHHHHHHHHHHHHHHHHHHH-----hchh--hhcc------------------
Confidence 011111111 11122222222222211110 1111 0111
Q ss_pred HHHHHHhhcccc----cchhhHHHhhhcCCCCCCCcchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy3416 180 LRQRAALAGTTH----HINRYLTAKLLDFEKPSENSLDS-ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLT 254 (455)
Q Consensus 180 ~~~~~~~~gt~~----~~~~~~~a~~l~~~~~~~~s~~a-~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~ 254 (455)
++..+|+++ +.++.+++..|||.. |.+.+ +++||++++++.++++++.+++|||+|+++|++.+++++
T Consensus 177 ---ga~G~g~~~~~~~~~~~~~~a~~LGl~~---~~~~~~~~~rd~~~e~~~~l~~~~~~l~ria~Dl~~~~s~e~gev- 249 (381)
T cd01595 177 ---GAVGTHASLGPKGPEVEERVAEKLGLKV---PPITTQIEPRDRIAELLSALALIAGTLEKIATDIRLLQRTEIGEV- 249 (381)
T ss_pred ---cHhhhHhhcCCcHHHHHHHHHHHcCCCC---CCCCCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccce-
Confidence 111222222 566777899999954 23444 569999999999999999999999999999999988875
Q ss_pred ccccccccC
Q psy3416 255 LPESFLTGS 263 (455)
Q Consensus 255 lp~~~~~~S 263 (455)
.+++..|+
T Consensus 250 -~~~~~~~~ 257 (381)
T cd01595 250 -EEPFEKGQ 257 (381)
T ss_pred -eccccCCC
Confidence 55444444
No 67
>cd01357 Aspartase Aspartase. This subgroup contains Escherichia coli aspartase (L-aspartate ammonia-lyase), Bacillus aspartase and related proteins. It is a member of the Lyase class I family, which includes both aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid.
Probab=98.78 E-value=5e-08 Score=102.95 Aligned_cols=164 Identities=12% Similarity=0.090 Sum_probs=113.5
Q ss_pred ccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhh
Q psy3416 39 IMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSI 118 (455)
Q Consensus 39 vm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~ 118 (455)
+..||| .||-.+|.+-.++..-...+.+.+.+|.+.+..... .....++.|.++..+ ...-.+|+..
T Consensus 130 vH~GrS-rnD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~-~~~~t~m~GrTH~Q~--A~P~TfG~~~--------- 196 (450)
T cd01357 130 VNMSQS-TNDVYPTALRLALILLLRKLLDALAALQEAFQAKAR-EFADVLKMGRTQLQD--AVPMTLGQEF--------- 196 (450)
T ss_pred ccCCCC-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCEeeccccCcc--cccchHHhHH---------
Confidence 789999 999999999999998888999999998888877765 456666777776543 1111222221
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhH-
Q psy3416 119 SDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYL- 197 (455)
Q Consensus 119 ~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~- 197 (455)
+.+...+...+.|+..=...+.. .| .|+++.||++++++.+
T Consensus 197 ---------~~~~~~l~r~~~rL~~~~~~~~~-------~p----------------------LGg~AvGt~~~~~~~~~ 238 (450)
T cd01357 197 ---------GAYATALKRDRARIYKARERLRE-------VN----------------------LGGTAIGTGINAPPGYI 238 (450)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHH-------hC----------------------CCCCceeCCCCCChhHH
Confidence 11222222222222211111110 01 1232347777777665
Q ss_pred ------HHhhhcCCC-CCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---cccc
Q psy3416 198 ------TAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ---FNFL 253 (455)
Q Consensus 198 ------~a~~l~~~~-~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~---~~~~ 253 (455)
++..|||.. +..|+++++++||++++++++++.++.+++|||+|+++|+|.| ++++
T Consensus 239 ~~v~~~~a~~LGl~~~~~~n~~~a~~~rd~~~e~~~~l~~~a~~L~riA~Di~l~ss~e~~~~gev 304 (450)
T cd01357 239 ELVVEKLSEITGLPLKRAENLIDATQNTDAFVEVSGALKRLAVKLSKIANDLRLLSSGPRAGLGEI 304 (450)
T ss_pred HHHHHHHHHHhCCCCccCcCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCceeE
Confidence 889999994 6779999999999999999999999999999999999999775 6543
No 68
>PLN00134 fumarate hydratase; Provisional
Probab=98.78 E-value=8.3e-08 Score=101.43 Aligned_cols=164 Identities=13% Similarity=0.154 Sum_probs=110.6
Q ss_pred ccccccccCccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhh
Q psy3416 39 IMPGFTHFQIAQPISLGHYLL-AYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDS 117 (455)
Q Consensus 39 vm~grTh~Q~A~P~T~G~~la-~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~ 117 (455)
|..||| .||..||.+-.++. .+...+.+.+.+|.+.+..... .+....+.|.++..+- ..-.+|++
T Consensus 126 vh~G~S-~nDiv~Ta~~L~~~~~~~~~l~~~l~~l~~~L~~~A~-~~~~t~m~grTH~Q~A--~P~T~G~~--------- 192 (458)
T PLN00134 126 VNRSQS-SNDTFPTAMHIAAATEIHSRLIPALKELHESLRAKSF-EFKDIVKIGRTHLQDA--VPLTLGQE--------- 192 (458)
T ss_pred cCCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCccccccccCCC--eeecHHHH---------
Confidence 339999 99999999999887 6677888888888887777654 4556666676654431 11111111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhH
Q psy3416 118 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYL 197 (455)
Q Consensus 118 ~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~ 197 (455)
+..+...+.-.+.|+..=...+. ....|++++||++++++.+
T Consensus 193 ---------~~~~~~~l~r~~~RL~~~~~~~~-----------------------------~~~lGg~AvGT~~~~~~~~ 234 (458)
T PLN00134 193 ---------FSGYATQVKYGLNRVQCTLPRLY-----------------------------ELAQGGTAVGTGLNTKKGF 234 (458)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHH-----------------------------HhCCCCeeecCCccCChhH
Confidence 11122222222222211111100 0111233457777777774
Q ss_pred -------HHhhhcCCCC-CCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccccc
Q psy3416 198 -------TAKLLDFEKP-SENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNP---QFNFL 253 (455)
Q Consensus 198 -------~a~~l~~~~~-~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~---~~~~~ 253 (455)
++..|||..+ ..|+++++++||++++++++++.++.+|+|||+|+++|+|+ +++++
T Consensus 235 ~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~llss~p~~e~gev 301 (458)
T PLN00134 235 DEKIAAAVAEETGLPFVTAPNKFEALAAHDAFVELSGALNTVAVSLMKIANDIRLLGSGPRCGLGEL 301 (458)
T ss_pred HHHHHHHHHHHhCCCCCCCccHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCcceE
Confidence 8999999975 78999999999999999999999999999999999999976 45544
No 69
>PRK12273 aspA aspartate ammonia-lyase; Provisional
Probab=98.76 E-value=1.1e-07 Score=100.95 Aligned_cols=158 Identities=14% Similarity=0.138 Sum_probs=108.7
Q ss_pred ccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhh
Q psy3416 41 PGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISD 120 (455)
Q Consensus 41 ~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~ 120 (455)
.||| .||..+|.+-.++......+...+.+|...+..... ....+++.|.++..+- ..-.+|+.
T Consensus 139 ~GrS-rnD~v~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~-~~~dt~m~GrTH~Q~A--qP~TfG~~------------ 202 (472)
T PRK12273 139 MSQS-TNDAYPTAIRIALLLSLRKLLDALEQLQEAFEAKAK-EFADILKMGRTQLQDA--VPMTLGQE------------ 202 (472)
T ss_pred CCCC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCEEeecccCccc--eeeeHHHH------------
Confidence 8999 999999999999999989999999998888877754 3556666676654431 11111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhH---
Q psy3416 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYL--- 197 (455)
Q Consensus 121 Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~--- 197 (455)
+..+...+.-.+.|+..=...+.. .| .|+++.||++++++.+
T Consensus 203 ------~a~~~~~l~r~~~RL~~~~~~~~~-------~p----------------------lGg~AvGT~~~i~~~~~~~ 247 (472)
T PRK12273 203 ------FGAYAVALAEDRKRLYRAAELLRE-------VN----------------------LGATAIGTGLNAPPGYIEL 247 (472)
T ss_pred ------HHHHHHHHHHHHHHHHHHHHHHhh-------cC----------------------CCccceeCCCCCChhHHHH
Confidence 111222222222222211111110 01 1233347777777765
Q ss_pred ----HHhhhcCCC-CCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3416 198 ----TAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 249 (455)
Q Consensus 198 ----~a~~l~~~~-~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~ 249 (455)
++..|||.. +..|+++++++||++.++++++++++.+|+|||+|+++|+|+|
T Consensus 248 v~~~~A~~LGf~~~~~~n~~da~~~rD~~~e~~~~la~la~~L~rlA~Di~llss~e 304 (472)
T PRK12273 248 VVEKLAEITGLPLVPAEDLIEATQDTGAFVEVSGALKRLAVKLSKICNDLRLLSSGP 304 (472)
T ss_pred HHHHHHHHcCCCcccCcCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 589999994 7779999999999999999999999999999999999999865
No 70
>PRK12425 fumarate hydratase; Provisional
Probab=98.75 E-value=1.7e-07 Score=99.17 Aligned_cols=162 Identities=11% Similarity=0.084 Sum_probs=109.3
Q ss_pred ccccccccCccccchHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhh
Q psy3416 39 IMPGFTHFQIAQPISLGHYLLAYA-SMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDS 117 (455)
Q Consensus 39 vm~grTh~Q~A~P~T~G~~la~~~-~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~ 117 (455)
|..||| .||..||.+-.++.... ..+...+.+|.+.+..... .+....+.|.++-.+ ...-.+|++
T Consensus 132 vh~g~S-~ND~~~Ta~~L~~r~~l~~~l~~~L~~l~~~L~~~A~-~~~~tim~GrTHlQ~--A~PiT~G~~--------- 198 (464)
T PRK12425 132 VNRSQS-SNDCFPTAMHIAAAQAVHEQLLPAIAELSGGLAEQSA-RHAKLVKTGRTHMMD--ATPITFGQE--------- 198 (464)
T ss_pred ccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCeeeccccccc--CccchHHHH---------
Confidence 889999 99999999999999888 6899999998888877654 455666667665443 111111111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhh-
Q psy3416 118 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRY- 196 (455)
Q Consensus 118 ~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~- 196 (455)
+..+...+.-.+.|+..-...+ ....+++++.||++++++.
T Consensus 199 ---------~~a~~~~l~rd~~RL~~~~~r~-----------------------------~~~plGggAvGT~~~~~~~~ 240 (464)
T PRK12425 199 ---------LSAFVAQLDYAERAIRAALPAV-----------------------------CELAQGGTAVGTGLNAPHGF 240 (464)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHH-----------------------------HHhcCCCchhcCcccCCccH
Confidence 1112222222222221111000 0111234445787777642
Q ss_pred ---H---HHhhhcCCCC-CCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-ccc
Q psy3416 197 ---L---TAKLLDFEKP-SENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNP-QFN 251 (455)
Q Consensus 197 ---~---~a~~l~~~~~-~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~-~~~ 251 (455)
. ++..|||+.+ .+|+++++++||++++++++++.++.+|+|||+|+++|+|+ +.+
T Consensus 241 ~~~~~~~La~~LG~~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~llsS~p~~g 303 (464)
T PRK12425 241 AEAIAAELAALSGLPFVTAPNKFAALAGHEPLVSLSGALKTLAVALMKIANDLRLLGSGPRAG 303 (464)
T ss_pred HHHHHHHHHHHhCCCCcccccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccCC
Confidence 2 3677899975 89999999999999999999999999999999999999987 444
No 71
>COG1027 AspA Aspartate ammonia-lyase [Amino acid transport and metabolism]
Probab=98.73 E-value=2.9e-08 Score=99.56 Aligned_cols=141 Identities=16% Similarity=0.183 Sum_probs=120.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecc------cCCCCccccccCCCCCcch------HHHHHHHHhhccc
Q psy3416 123 FVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTL------PESFLTGSSIMPQKKNPDV------KDLRQRAALAGTT 190 (455)
Q Consensus 123 ~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~------~e~~~~gSStMP~K~NP~~------~e~~~~~~~~gt~ 190 (455)
.+..+...+..+-.++.+.+++|.....+|.++++- ..+|..++-++-..+.... .|...|++++||+
T Consensus 157 ~l~~L~~al~~L~~af~~Ka~EF~~ilKmGRTqLQDAvPmtlGqEF~Afa~~l~ed~~ri~~~~~~l~evNlGgTAiGTG 236 (471)
T COG1027 157 SLRKLIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTLGQEFGAFAVALKEDIKRIYRAAELLLEVNLGGTAIGTG 236 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhcChhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceeeccC
Confidence 455666777778899999999999999999999843 3345566666665555443 3555689999999
Q ss_pred ccchhhH-------HHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---cccccccccc
Q psy3416 191 HHINRYL-------TAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ---FNFLTLPESF 259 (455)
Q Consensus 191 ~~~~~~~-------~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~---~~~~~lp~~~ 259 (455)
.++++.| ++..+|++ ++.+|.++++.+.|.++++++.+..++..|+|||+|+++++|+| ++++.||+ .
T Consensus 237 iNa~~~Y~~~vv~~l~evtg~~~~~A~~Lieatq~~~afv~vsg~lk~~Av~LsKI~NDlRLLsSGPr~Gl~EI~LP~-~ 315 (471)
T COG1027 237 INAPKGYIELVVKKLAEVTGLPLVPAENLIEATQDTGAFVMVSGALKRLAVKLSKICNDLRLLSSGPRAGLNEINLPA-V 315 (471)
T ss_pred cCCChhHHHHHHHHHHHHhCCCCccchhHHHHHhcccHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccCcccccCCC-C
Confidence 9999999 57889999 99999999999999999999999999999999999999999999 99999998 8
Q ss_pred cccCc
Q psy3416 260 LTGSS 264 (455)
Q Consensus 260 ~~~SS 264 (455)
+.|||
T Consensus 316 Q~GSS 320 (471)
T COG1027 316 QAGSS 320 (471)
T ss_pred CCCCC
Confidence 89987
No 72
>cd03302 Adenylsuccinate_lyase_2 Adenylsuccinate lyase (ASL)_subgroup 2. This subgroup contains mainly eukaryotic proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP). ASL deficiency has been linked to several pathologies including psychomotor retardation with autistic features, epilepsy and muscle wasting.
Probab=98.72 E-value=1.3e-07 Score=99.61 Aligned_cols=197 Identities=13% Similarity=0.048 Sum_probs=123.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcC
Q psy3416 16 IIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHH 95 (455)
Q Consensus 16 ~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~ 95 (455)
.....+..+...|.++..+....++.|+| .|+-+.|++..++......+...+.+|.+.+..... .....++.|.++.
T Consensus 67 ~~~hdv~a~~~~l~~~~~~~~~~vH~G~T-S~Di~dta~~L~lr~a~~~l~~~L~~l~~~L~~~A~-~~~dt~m~GrTH~ 144 (436)
T cd03302 67 KLRHDVMAHVHAFGLLCPAAAGIIHLGAT-SCFVTDNTDLIQIRDALDLILPKLAAVIDRLAEFAL-EYKDLPTLGFTHY 144 (436)
T ss_pred HhCcCchHHHHHHHHHhHhccCeeeeCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCeeeccccC
Confidence 34445566667777777788889999999 999999999999999999999999998888877764 4556666677665
Q ss_pred cchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCc
Q psy3416 96 INRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNP 175 (455)
Q Consensus 96 ~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP 175 (455)
.+ ...-.+|++-...- ..-...++++.++...+.. +.. ....|+.
T Consensus 145 Q~--A~P~TfG~~~a~~~-~~L~r~~~RL~~~~~~~~~----------------------~~~--~GavGt~-------- 189 (436)
T cd03302 145 QP--AQLTTVGKRACLWI-QDLLMDLRNLERLRDDLRF----------------------RGV--KGTTGTQ-------- 189 (436)
T ss_pred Cc--cccchHHHHHHHHH-HHHHHHHHHHHHHHHHHHh----------------------hcC--cChhhhh--------
Confidence 43 11112222210000 0001112222222111110 000 0001110
Q ss_pred chHHHHHHHHhhcccccchh-------hHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3416 176 DVKDLRQRAALAGTTHHINR-------YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNP 248 (455)
Q Consensus 176 ~~~e~~~~~~~~gt~~~~~~-------~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~ 248 (455)
+..|+.++.++ .+++..|||..+. +...++++||++++++.+++.++.+|+|||+|+++|++
T Consensus 190 ---------a~~~~~~~~dr~~~~~v~~~~a~~LGl~~~~-~~~~~v~~rD~~~e~~~~la~~a~~L~riA~Dl~l~~s- 258 (436)
T cd03302 190 ---------ASFLDLFEGDHDKVEALDELVTKKAGFKKVY-PVTGQTYSRKVDIDVLNALSSLGATAHKIATDIRLLAN- 258 (436)
T ss_pred ---------HHHHhcCCchHHHHHHHHHHHHHHcCCCCCC-CchhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-
Confidence 11122222222 4578889999874 44457899999999999999999999999999999998
Q ss_pred ccccccccccccccC
Q psy3416 249 QFNFLTLPESFLTGS 263 (455)
Q Consensus 249 ~~~~~~lp~~~~~~S 263 (455)
++ ++++.+..|.
T Consensus 259 -~~--el~e~~~~g~ 270 (436)
T cd03302 259 -LK--EVEEPFEKGQ 270 (436)
T ss_pred -Cc--eecccccCCC
Confidence 43 6666555554
No 73
>TIGR00839 aspA aspartate ammonia-lyase. Fumarate hydratase scores as high as 570 bits against this model.
Probab=98.71 E-value=2.2e-07 Score=98.44 Aligned_cols=159 Identities=14% Similarity=0.116 Sum_probs=109.2
Q ss_pred ccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhh
Q psy3416 41 PGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISD 120 (455)
Q Consensus 41 ~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~ 120 (455)
.||| .||..+|.+-.++......+.+++.+|.+.+..... ....+.+.|.++..+ ...-.+|+
T Consensus 135 ~G~S-~nD~v~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~-~~~~t~m~grTH~Q~--A~P~TfG~------------- 197 (468)
T TIGR00839 135 KSQS-TNDAYPTGFRIAVYSSLIKLVDAINQLRDGFEQKAK-EFADILKMGRTQLQD--AVPMTLGQ------------- 197 (468)
T ss_pred CCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCeeeccccCcc--CccchHHH-------------
Confidence 5999 999999999999999999999999998888877754 345556666665442 11111111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHH--
Q psy3416 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLT-- 198 (455)
Q Consensus 121 Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~-- 198 (455)
.++.+...+.-.+.|+..-...+... | .|++..||++++++.+.
T Consensus 198 -----~~~~~~~~l~r~~~RL~~~~~~~~~~-------~----------------------lGg~AvGT~~~~~~~~~~~ 243 (468)
T TIGR00839 198 -----EFEAFSILLEEEVKNIKRTAELLLEV-------N----------------------LGATAIGTGLNTPPEYSPL 243 (468)
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHhhhc-------C----------------------CCCcceeCCCcCChhHHHH
Confidence 12222333333333332211111110 1 12223477777776655
Q ss_pred -----HhhhcCCCC-CCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy3416 199 -----AKLLDFEKP-SENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQF 250 (455)
Q Consensus 199 -----a~~l~~~~~-~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~ 250 (455)
+..|||+.+ ..|+++++++||++++++++++.++.+|+|||+|+++|+|++.
T Consensus 244 v~~~~a~~LGl~~~~~~n~~da~~~rd~~~e~~~~l~~la~~L~ria~Dl~l~~s~~~ 301 (468)
T TIGR00839 244 VVKKLAEVTGLPCVPAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPR 301 (468)
T ss_pred HHHHHHHHhCCCCCCCccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence 899999976 5799999999999999999999999999999999999998753
No 74
>TIGR00979 fumC_II fumarate hydratase, class II. Putative fumarases from several species (Mycobacterium tuberculosis, Streptomyces coelicolor, Pseudomonas aeruginosa) branch deeply, although within the same branch of a phylogenetic tree rooted by aspartate ammonia-lyase sequences, and score between the trusted and noise cutoffs.
Probab=98.70 E-value=3.7e-07 Score=96.52 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=112.1
Q ss_pred Ccccc------cccccCccccchHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCC
Q psy3416 37 KTIMP------GFTHFQIAQPISLGHYLLAYA-SMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEK 109 (455)
Q Consensus 37 ~tvm~------grTh~Q~A~P~T~G~~la~~~-~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~ 109 (455)
..+++ ||| .||..||-+-.++..-. ..+.+.+.+|.+.+..... .+...++.|.++..+- ..-.+|++
T Consensus 123 ~~vH~~d~vn~G~S-~nDiv~Ta~~L~lr~~l~~~l~~~l~~l~~~L~~~A~-~~~dt~m~GrTH~Q~A--~P~TfG~~- 197 (458)
T TIGR00979 123 QPVHPNDHVNKSQS-SNDTFPTAMHIAAVLAIKNQLIPALENLKKTLDAKSK-EFAHIVKIGRTHLQDA--TPLTLGQE- 197 (458)
T ss_pred ceeCCCCCCCCCCC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCeeecccccccc--eeeeHHHH-
Confidence 34885 999 99999999999988666 6888888888888777754 4566666677665431 11111211
Q ss_pred CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcc
Q psy3416 110 PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGT 189 (455)
Q Consensus 110 ~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt 189 (455)
+..+...+.-.+.|+..=... +. ....|++++||
T Consensus 198 -----------------~~~~~~~l~r~~~RL~~~~~~-----~~------------------------~~~lGg~AvGT 231 (458)
T TIGR00979 198 -----------------FSGYVAQLEHGLERIAYSLPH-----LY------------------------ELAIGGTAVGT 231 (458)
T ss_pred -----------------HHHHHHHHHHHHHHHHHHHHH-----HH------------------------HhcCCCChhcC
Confidence 111222222222222110000 00 01112334588
Q ss_pred cccchhh-------HHHhhhcCCC-CCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccccc
Q psy3416 190 THHINRY-------LTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNP---QFNFL 253 (455)
Q Consensus 190 ~~~~~~~-------~~a~~l~~~~-~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~---~~~~~ 253 (455)
++++++. +++..|||.. +..|+++++++||++++++++++.++.+++|||+|+++|+|+ +++++
T Consensus 232 ~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~~~~~~rD~~~e~~~~La~la~~L~kia~Dl~llss~~~~e~gev 306 (458)
T TIGR00979 232 GLNTHPGFDEKVAEEIAKETGLPFVTAPNKFEALAAHDAIVEAHGALKTLAASLMKIANDIRWLGSGPRCGLGEL 306 (458)
T ss_pred CccCChhHHHHHHHHHHHHhCCCCeecCcHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCceeE
Confidence 8888876 4889999996 688999999999999999999999999999999999999976 46654
No 75
>PRK06390 adenylosuccinate lyase; Provisional
Probab=98.69 E-value=1.7e-07 Score=99.13 Aligned_cols=207 Identities=19% Similarity=0.201 Sum_probs=141.9
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchH
Q psy3416 20 LLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY 99 (455)
Q Consensus 20 ~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~ 99 (455)
.+..+.+.|.++..+....++.|+| .||..+|.+-.++......+.+.+.+|.+.+..... ....+++.|.++..+
T Consensus 77 dv~~~~~~L~~~~g~~~~~iH~G~S-snDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~lA~-~~~~t~m~grTH~Q~-- 152 (451)
T PRK06390 77 DVMALVEALSEQCSAGKNYVHFGVT-SNDINDTATALQIHDFVSIIKDDIKNLMETLIKLID-EYKDSPMMGRTHGQH-- 152 (451)
T ss_pred CcHHHHHHHHHHhhhhhhheecCcc-HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCchhhhhCCCc--
Confidence 3455666666666666788999999 999999999999998888999998888887776654 455666666665443
Q ss_pred HHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHH
Q psy3416 100 LTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKD 179 (455)
Q Consensus 100 ~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e 179 (455)
...-.+|++ ++.+...+.-.+.|+..=...+. .+.+ ....|+
T Consensus 153 A~P~T~G~~------------------~~~~~~~l~r~~~RL~~~~~r~~-----~~~~--~gavGt------------- 194 (451)
T PRK06390 153 ASPITFGLK------------------FAVYLDEMSRHLDRLTEMGDRAF-----AGKV--LGPVGT------------- 194 (451)
T ss_pred CeehhHHHH------------------HHHHHHHHHHHHHHHHHHHHHhh-----hhcc--CChhcC-------------
Confidence 111111211 12222222222222222111110 0000 001111
Q ss_pred HHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc--ccc
Q psy3416 180 LRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLT--LPE 257 (455)
Q Consensus 180 ~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~--lp~ 257 (455)
++..|+.+.....+++..|||+.+.. .+++++||++.+++..++.++.+++|||+|+++|++++++++. +++
T Consensus 195 ----~a~~g~~~~~~~~~~a~~LGl~~~~~--~~~~~~rD~~~e~~~~l~~la~~l~kia~Di~l~ss~e~g~v~E~~~~ 268 (451)
T PRK06390 195 ----GAALGKDALDIQNRVMEILGIYSEIG--STQIVNRDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEYFDE 268 (451)
T ss_pred ----hhhCCCcHHHHHHHHHHHcCCCCCCC--ccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhccccc
Confidence 22335556667788999999998644 4578999999999999999999999999999999999999984 777
Q ss_pred cccccCccCccccChhH
Q psy3416 258 SFLTGSSIMPQKKNPDV 274 (455)
Q Consensus 258 ~~~~~SS~mp~K~np~~ 274 (455)
.+++|||+|||||||+.
T Consensus 269 ~~~~GSSiMP~KrNPv~ 285 (451)
T PRK06390 269 ESQVGSSSMPSKVNPIN 285 (451)
T ss_pred CCCCCccCCCCCCCcHH
Confidence 79999999999999965
No 76
>TIGR02426 protocat_pcaB 3-carboxy-cis,cis-muconate cycloisomerase. Members of this family are 3-carboxy-cis,cis-muconate cycloisomerase, the enzyme the catalyzes the second step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=98.68 E-value=6.9e-07 Score=91.08 Aligned_cols=181 Identities=16% Similarity=0.132 Sum_probs=114.7
Q ss_pred HHHHHHHHHHHH-HhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHH
Q psy3416 22 LTMIKHLTDLSD-KHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYL 100 (455)
Q Consensus 22 ~~l~~~L~~~A~-~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~ 100 (455)
..+.+.|.++.. +....++.||| .||..||.+-.++......+...+.+|.+.+..... .....++.|.++..+-
T Consensus 75 ~~~~~~l~~~~g~~~g~~vH~G~S-~nD~~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~-~~~~~~m~grTH~Q~A-- 150 (338)
T TIGR02426 75 IPLVKALRKAVAGEAARYVHRGAT-SQDVIDTSLMLQLRDALDLLLADLGRLADALADLAA-RHRDTPMTGRTLLQQA-- 150 (338)
T ss_pred HHHHHHHHHHhCccccCcccCCCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCceecccCCCcC--
Confidence 355666666663 46678999999 999999999999998889999999998888777654 4556666666654431
Q ss_pred HHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccc-cccCCCCCcchHH
Q psy3416 101 TAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGS-SIMPQKKNPDVKD 179 (455)
Q Consensus 101 ~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gS-StMP~K~NP~~~e 179 (455)
..-.+|++ +..+...+.-.+.|+..=...+ .. .|-+..+|+ +.+|...
T Consensus 151 ~P~T~G~~------------------l~~~~~~l~r~~~rL~~~~~~~-----~~--~~lGgavGtg~~~~~~~------ 199 (338)
T TIGR02426 151 VPTTFGLK------------------AAGWLAAVLRARDRLAALRTRA-----LP--LQFGGAAGTLAALGTRG------ 199 (338)
T ss_pred eehhHHHH------------------HHHHHHHHHHHHHHHHHHHHHh-----Hh--cCCcchhccCCCccchH------
Confidence 11111111 1111111112222221111111 00 111111121 2233211
Q ss_pred HHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy3416 180 LRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNF 252 (455)
Q Consensus 180 ~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~ 252 (455)
+.+ +.+++..|||..+..+ ++++||+++++++.++.++.+++|||+|+++|++.++++
T Consensus 200 -----------~~v-~~~~a~~LGl~~~~~~---~~~~rd~~~e~~~~l~~la~~l~ria~Dl~l~s~~e~ge 257 (338)
T TIGR02426 200 -----------GAV-AAALAARLGLPLPALP---WHTQRDRIAEFGSALALVAGALGKIAGDIALLSQTEVGE 257 (338)
T ss_pred -----------HHH-HHHHHHHhCcCCCCCc---chhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 122 4567899999987654 579999999999999999999999999999999988875
No 77
>PRK14515 aspartate ammonia-lyase; Provisional
Probab=98.66 E-value=3.2e-07 Score=97.31 Aligned_cols=163 Identities=13% Similarity=0.136 Sum_probs=110.4
Q ss_pred cccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhh
Q psy3416 38 TIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDS 117 (455)
Q Consensus 38 tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~ 117 (455)
-|..||+ .||..||-+-.++......|...+.+|.+.+..... .+...++.|.++..+ ...-.+|++
T Consensus 140 ~vn~grS-~ND~v~Ta~~L~~~~~l~~l~~~L~~L~~~L~~~A~-~~~~~vm~GrTHlQ~--A~PiT~G~~--------- 206 (479)
T PRK14515 140 HVNMAQS-TNDAFPTAIHIATLNALEGLLQTMGYMHDVFELKAE-QFDHVIKMGRTHLQD--AVPIRLGQE--------- 206 (479)
T ss_pred cCCCCCC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCcccchhcccc--ceeeeHHHH---------
Confidence 5668888 899999999999999989999999998888887765 456666667665443 111111111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhH
Q psy3416 118 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYL 197 (455)
Q Consensus 118 ~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~ 197 (455)
+..+...+.-.+.|+..=...+. ....|+++.||++++++.+
T Consensus 207 ---------~~~~a~~l~r~~~RL~~~~~~l~-----------------------------~~pLG~gAvGT~~~~~~~~ 248 (479)
T PRK14515 207 ---------FKAYSRVLERDMKRIQQSRQHLY-----------------------------EVNMGATAVGTGLNADPEY 248 (479)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHh-----------------------------hccCCCccccCCCCCChhH
Confidence 12222222222222221111111 0111334558888998887
Q ss_pred HHhhhcC-------C-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc-cc
Q psy3416 198 TAKLLDF-------E-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ-FN 251 (455)
Q Consensus 198 ~a~~l~~-------~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~-~~ 251 (455)
.+..++| + .+..|+++++++||++++++++++.++.+|+|||+|+++|+|+| ++
T Consensus 249 ~~~~l~~la~~~gl~~~~~~n~~da~~~rd~~~e~~~~l~~la~~L~kiA~Dl~llsS~p~~g 311 (479)
T PRK14515 249 IEAVVKHLAAISELPLVGAEDLVDATQNTDAYTEVSAALKVCMMNMSKIANDLRLMASGPRVG 311 (479)
T ss_pred HHHHHHHHHHHhCCCCCCCcchHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCC
Confidence 6655544 4 24459999999999999999999999999999999999999875 55
No 78
>cd01597 pCLME prokaryotic 3-carboxy-cis,cis-muconate cycloisomerase (CMLE)_like. This subgroup contains pCLME and related proteins, and belongs to the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. CMLE catalyzes the cyclization of 3-carboxy-cis,cis-muconate (3CM) to 4-carboxy-muconolactone in the beta-ketoadipate pathway. This pathway is responsible for the catabolism of a variety of aromatic compounds into intermediates of the citric cycle in prokaryotic and eukaryotic micro-organisms.
Probab=98.61 E-value=7.2e-07 Score=94.07 Aligned_cols=181 Identities=18% Similarity=0.177 Sum_probs=111.6
Q ss_pred HHHHHHHHHHH-HhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcc--hH
Q psy3416 23 TMIKHLTDLSD-KHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHIN--RY 99 (455)
Q Consensus 23 ~l~~~L~~~A~-~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~--~~ 99 (455)
.+.+.|.++.. +....++.||| .+|-.||.+-.++......+...+..|.+.+..... ......+.|.++..+ |.
T Consensus 76 a~e~~l~e~~g~~~g~~lH~grS-rnD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~-~~~~~~m~grTH~Q~A~P~ 153 (437)
T cd01597 76 PLVKQLTAACGDAAGEYVHWGAT-TQDIIDTALVLQLRDALDLLERDLDALLDALARLAA-THRDTPMVGRTHLQHALPI 153 (437)
T ss_pred HHHHHHHHHcCccccCeeecCcc-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCeeehhhcCccceec
Confidence 45555655554 34688999999 999999999999998888888888888777766643 344445555554332 11
Q ss_pred HHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCcc-ccccCCCCCcchH
Q psy3416 100 LTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTG-SSIMPQKKNPDVK 178 (455)
Q Consensus 100 ~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~g-SStMP~K~NP~~~ 178 (455)
.+... +..+...+...+.++..=. ..+.. .|-+...| .+++|...
T Consensus 154 T~G~~----------------------~~~~~~~l~r~~~rL~~~~-----~~~~~--~~lGga~Gtg~~~~~~~----- 199 (437)
T cd01597 154 TFGLK----------------------VAVWLSELLRHRERLDELR-----PRVLV--VQFGGAAGTLASLGDQG----- 199 (437)
T ss_pred hHHHH----------------------HHHHHHHHHHHHHHHHHHH-----Hhhhh--hccccccccccccCCcH-----
Confidence 11111 1111111112222221100 00111 11111111 11222210
Q ss_pred HHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q psy3416 179 DLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 257 (455)
Q Consensus 179 e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~ 257 (455)
..++.+++..|||..+..+ ++++||+++++++.++.++.+++|||+|+++|+++++++ +.+
T Consensus 200 -------------~~~~~~~a~~LGf~~~~~~---~~~~rd~~~e~~~~l~~~a~~l~rla~Dl~l~s~~e~ge--l~~ 260 (437)
T cd01597 200 -------------LAVQEALAAELGLGVPAIP---WHTARDRIAELASFLALLTGTLGKIARDVYLLMQTEIGE--VAE 260 (437)
T ss_pred -------------HHHHHHHHHHcCCCCCCCc---cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccce--eec
Confidence 0135678899999987654 479999999999999999999999999999999998874 454
No 79
>PRK13353 aspartate ammonia-lyase; Provisional
Probab=98.61 E-value=9.4e-07 Score=93.90 Aligned_cols=160 Identities=13% Similarity=0.104 Sum_probs=109.5
Q ss_pred cccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhh
Q psy3416 38 TIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDS 117 (455)
Q Consensus 38 tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~ 117 (455)
-+..||| .||-.||.+-.++......+...+.+|.+.+..... ......+.|.++..+ ...-.+|++
T Consensus 134 ~vH~GrS-rnD~v~Ta~~L~~r~~l~~l~~~L~~l~~~L~~~A~-~~~~~im~GrTH~Q~--A~P~T~G~~--------- 200 (473)
T PRK13353 134 HVNMAQS-TNDVFPTAIRIAALNLLEGLLAAMGALQDVFEEKAA-EFDHVIKMGRTQLQD--AVPITLGQE--------- 200 (473)
T ss_pred CccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCeeeccccCcc--ceeecHHHH---------
Confidence 3999999 999999999999998888999999998888877754 455666667665443 111111111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhH
Q psy3416 118 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYL 197 (455)
Q Consensus 118 ~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~ 197 (455)
++.+...+...+.|+..=...+ .. .| .|+++.||++++++.+
T Consensus 201 ---------~~~~~~~l~r~~~rL~~~~~~~-----~~--~p----------------------LGg~AvGT~~~~~~~~ 242 (473)
T PRK13353 201 ---------FSAYARALKRDRKRIQQAREHL-----YE--VN----------------------LGGTAVGTGLNADPEY 242 (473)
T ss_pred ---------HHHHHHHHHHHHHHHHHHHHHH-----hh--hC----------------------CCCccccCCccCChhH
Confidence 1122222222222221111111 00 01 1233447777777665
Q ss_pred -------HHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc
Q psy3416 198 -------TAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNP 248 (455)
Q Consensus 198 -------~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~ 248 (455)
++..|||. .+..|+++++++||+++++++.++.++.+++|||+|+++|+|+
T Consensus 243 ~~~~~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~la~la~~l~riA~Dl~llss~ 301 (473)
T PRK13353 243 IERVVKHLAAITGLPLVGAEDLVDATQNTDAFVEVSGALKVCAVNLSKIANDLRLLSSG 301 (473)
T ss_pred HHHHHHHHHHHhCCCCccccchHhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 45789999 5778999999999999999999999999999999999999986
No 80
>TIGR00928 purB adenylosuccinate lyase. This family consists of adenylosuccinate lyase, the enzyme that catalyzes step 8 in the purine biosynthesis pathway for de novo synthesis of IMP and also the final reaction in the two-step sequence from IMP to AMP.
Probab=98.59 E-value=3.6e-07 Score=96.32 Aligned_cols=190 Identities=15% Similarity=0.154 Sum_probs=125.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcc
Q psy3416 18 IELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHIN 97 (455)
Q Consensus 18 ~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~ 97 (455)
...+..+...|.++..+....+..|+| .||..||.+-.++......+.+.+.+|.+.+..... .....++.|.++..+
T Consensus 70 ~~~v~~~e~~l~~~~g~~~~~vh~g~S-snD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~-~~~~t~m~grTH~Q~ 147 (435)
T TIGR00928 70 RHDVKAVVYALKEKCGAEGEFIHFGAT-SNDIVDTALALLLRDALEIILPKLKQLIDRLKDLAV-EYKDTVMLGRTHGQH 147 (435)
T ss_pred CcChHHHHHHHHHHhhhhhhheeeccc-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccchHhHHhcCCC
Confidence 344556666677666667788999999 999999999999998888888888888877776654 344445555554332
Q ss_pred hHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcch
Q psy3416 98 RYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDV 177 (455)
Q Consensus 98 ~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~ 177 (455)
...-.+|++ +..+...+.-.+.|+..=... +.. .|
T Consensus 148 --A~P~T~G~~------------------~~~~~~~l~r~~~rL~~~~~~-----~~~--~~------------------ 182 (435)
T TIGR00928 148 --AEPTTLGKK------------------FALWADEMKRQLERLLQAKER-----IKV--GG------------------ 182 (435)
T ss_pred --CcchhHHHH------------------HHHHHHHHHHHHHHHHHHHHH-----hHh--hc------------------
Confidence 111111111 111222222222222110000 000 00
Q ss_pred HHHHHHHHhhcccccchh------hHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy3416 178 KDLRQRAALAGTTHHINR------YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFN 251 (455)
Q Consensus 178 ~e~~~~~~~~gt~~~~~~------~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~ 251 (455)
.++ .+||++++++ .+++..|||+.+..+. ++++||+++++++.++.++.+|+|||+|+++|++.++
T Consensus 183 ----lgG-a~Gt~~~~~~~~~~~~~~~a~~LGl~~~~~~~--~~~~rD~~~e~~~~l~~la~~L~ria~Dl~l~s~~~~- 254 (435)
T TIGR00928 183 ----ISG-AVGTHAAAYPLVEEVEERVTEFLGLKPVPIST--QIEPRDRHAELLDALALLATTLEKFAVDIRLLQRTEH- 254 (435)
T ss_pred ----ccc-hhhhHhhccccHHHHHHHHHHhcCCCCCCCCc--cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-
Confidence 012 3677777776 6789999999887554 7899999999999999999999999999999998855
Q ss_pred cccccccccccC
Q psy3416 252 FLTLPESFLTGS 263 (455)
Q Consensus 252 ~~~lp~~~~~~S 263 (455)
.++++++..|.
T Consensus 255 -~el~~~~~~~~ 265 (435)
T TIGR00928 255 -FEVEEPFGKGQ 265 (435)
T ss_pred -cceecccCCCC
Confidence 67777666654
No 81
>PRK07492 adenylosuccinate lyase; Provisional
Probab=98.59 E-value=6.7e-07 Score=94.05 Aligned_cols=189 Identities=17% Similarity=0.206 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcch
Q psy3416 19 ELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINR 98 (455)
Q Consensus 19 ~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~ 98 (455)
..+..+.+.|.++..+....++.|+| .||-.+|.+..++......+.+++.+|.+.+..... ......+.|.++..+
T Consensus 71 h~v~a~~~~L~~~~g~~~~~vH~G~T-s~Di~dTa~~L~lr~~~~~l~~~l~~l~~~L~~~A~-~~~~t~m~grTH~Q~- 147 (435)
T PRK07492 71 HDVIAFLTHLAEFVGPDARFVHQGMT-SSDVLDTCLNVQLVRAADLLLADLDRVLAALKKRAF-EHKDTPTIGRSHGIH- 147 (435)
T ss_pred CChHHHHHHHHHHhhHhhhhhcCCCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCEEeeccCCcc-
Confidence 34556666666666666888999999 999999999999999999999999998888877765 455666667766543
Q ss_pred HHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchH
Q psy3416 99 YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVK 178 (455)
Q Consensus 99 ~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~ 178 (455)
...-.+|++ ++.+...+.-.+.|+..=... +... |-
T Consensus 148 -A~P~TfG~~------------------~a~~~~~l~r~~~rL~~~~~~-----~~~~--~l------------------ 183 (435)
T PRK07492 148 -AEPTTFGLK------------------LARFYAEFARNRERLVAAREE-----IATC--AI------------------ 183 (435)
T ss_pred -ceehhHHHH------------------HHHHHHHHHHHHHHHHHHHHh-----hhhc--cC------------------
Confidence 111122222 111222222222222111000 0000 10
Q ss_pred HHHHHHHhhcccccchh---hHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy3416 179 DLRQRAALAGTTHHINR---YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTL 255 (455)
Q Consensus 179 e~~~~~~~~gt~~~~~~---~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~l 255 (455)
+ +.+||.+++++ .+++..|||..+.. ..++++||+++++++++++++++|+|||+|+++|+++++ .++
T Consensus 184 ----g-GAvGT~~~~~~~~~~~~a~~LGl~~~~~--~~~v~~RD~~~e~~~~la~~~~~L~ria~Di~~l~~~e~--~El 254 (435)
T PRK07492 184 ----S-GAVGTFANIDPRVEEHVAKKLGLKPEPV--STQVIPRDRHAMFFATLGVIASSIERLAIEIRHLQRTEV--LEA 254 (435)
T ss_pred ----c-ccccCCccCChHHHHHHHHHhCCCCCCc--cccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--chh
Confidence 1 12455555555 56788999987433 235799999999999999999999999999999999877 567
Q ss_pred cccccccC
Q psy3416 256 PESFLTGS 263 (455)
Q Consensus 256 p~~~~~~S 263 (455)
++.+..|.
T Consensus 255 ~e~~~~g~ 262 (435)
T PRK07492 255 EEFFSPGQ 262 (435)
T ss_pred ccccCCCC
Confidence 77666653
No 82
>cd01360 Adenylsuccinate_lyase_1 Adenylsuccinate lyase (ASL)_subgroup 1. This subgroup contains bacterial and archeal proteins similar to ASL, a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two steps in the de novo purine biosynthesis: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and, the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=98.58 E-value=1.8e-06 Score=89.61 Aligned_cols=189 Identities=18% Similarity=0.207 Sum_probs=123.2
Q ss_pred HHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHH
Q psy3416 21 LLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYL 100 (455)
Q Consensus 21 l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~ 100 (455)
+..+.+.|.++..+..+.++.||| .||-.+|.+-.++..+...+...+.+|.+....... .....++.|.++..+ .
T Consensus 67 v~~~e~~L~~~~g~~~~~lH~G~S-~nDi~~ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~-~~~~t~m~grTH~Q~--A 142 (387)
T cd01360 67 VIAFVTAIAEYCGEAGRYIHFGLT-SSDVVDTALALQLREALDIILKDLKELLEVLKKKAL-EHKDTVMVGRTHGIH--A 142 (387)
T ss_pred hHHHHHHHHHHHHHhhhheeCCCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCeeehhhcCCc--c
Confidence 345666677777777888999999 999999999999999999999999998888777754 345556666655432 0
Q ss_pred HHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHH
Q psy3416 101 TAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL 180 (455)
Q Consensus 101 ~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~ 180 (455)
..-.+|+. ++.+...+.-.+.|+..=... +.. .|-+
T Consensus 143 ~P~TfG~~------------------l~~~~~~L~r~~~rL~~~~~~-----~~~--~~lg------------------- 178 (387)
T cd01360 143 EPTTFGLK------------------FALWYAEFKRHLERLKEARER-----ILV--GKIS------------------- 178 (387)
T ss_pred eeehHHHH------------------HHHHHHHHHHHHHHHHHHHHH-----hHh--hccc-------------------
Confidence 00111111 111111111222222111100 000 0111
Q ss_pred HHHHHhhccccc-chhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Q psy3416 181 RQRAALAGTTHH-INRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESF 259 (455)
Q Consensus 181 ~~~~~~~gt~~~-~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~ 259 (455)
+++..|++++ .++.+++..|||..+..++ ++++||++++++.++++++.+|+|||+|+.+|++++++ ++++.+
T Consensus 179 --ga~Gt~~~~~~~~~~~~a~~LG~~~~~~~~--~~~~rD~~~e~~~~la~~~~~L~ria~Dl~~~s~~e~g--el~e~~ 252 (387)
T cd01360 179 --GAVGTYANLGPEVEERVAEKLGLKPEPIST--QVIQRDRHAEYLSTLALIASTLEKIATEIRHLQRTEVL--EVEEPF 252 (387)
T ss_pred --hHhhcCccCCHHHHHHHHHHcCCCCCCCCC--cccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--ceecCC
Confidence 1122222333 3466788999999876553 68999999999999999999999999999999999886 677766
Q ss_pred cccC
Q psy3416 260 LTGS 263 (455)
Q Consensus 260 ~~~S 263 (455)
..|.
T Consensus 253 ~~~~ 256 (387)
T cd01360 253 SKGQ 256 (387)
T ss_pred CCCC
Confidence 6654
No 83
>KOG2700|consensus
Probab=98.53 E-value=8.1e-07 Score=90.62 Aligned_cols=123 Identities=19% Similarity=0.180 Sum_probs=92.8
Q ss_pred cccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3416 167 SIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM 246 (455)
Q Consensus 167 StMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~ 246 (455)
-..+.+.+|...+...- -.+.+..+||..+...+ -...+|+...+..+.+++..+...|+|.|+++..
T Consensus 203 asf~~l~~~~~~kv~~l-----------d~Lv~k~~gf~~~~~~T-GQt~sr~~~~~~~~~la~lgat~~k~~Tdirll~ 270 (481)
T KOG2700|consen 203 ASFLSLFLGDMDKVEKL-----------DSLVTKELGFVPMYIVT-GQTYSRKTDAEEVAPLASLGATAHKYATDIRLLA 270 (481)
T ss_pred HHHHHhhcccHHHHHHH-----------HHHHHHHhCCCcccccc-CCcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677766554321 12356788888765554 5778899999999999999999999999999998
Q ss_pred ccccccccccccc---cccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccc
Q psy3416 247 NPQFNFLTLPESF---LTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL 307 (455)
Q Consensus 247 s~~~~~~~lp~~~---~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 307 (455)
. +.++-++| +.|||.||+||||..+|.+.++++.+..+....++. ....+++|++
T Consensus 271 ~----~~ev~epFea~q~gsSaMp~krNpm~~E~itslar~l~~~v~~al~~--~~~qw~Ertl 328 (481)
T KOG2700|consen 271 K----FAEVEEPFEAHQIGSSAMPYKRNPMRCERITSLARHLRPYVTQALNT--ASVQWHERTL 328 (481)
T ss_pred H----HHHhhccccccccccccCCCCCCCchhHHHhHHHHHHHHHHHHHhhh--HHHHHhhccc
Confidence 6 33344444 889999999999999999999999999887666542 1125666665
No 84
>cd01596 Aspartase_like aspartase (L-aspartate ammonia-lyase) and fumarase class II enzymes. This group contains aspartase (L-aspartate ammonia-lyase), fumarase class II enzymes, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Aspartase catalyzes the reversible deamination of aspartic acid. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=98.52 E-value=2e-07 Score=98.42 Aligned_cols=128 Identities=13% Similarity=0.108 Sum_probs=101.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHH-------------H----H
Q psy3416 120 DRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL-------------R----Q 182 (455)
Q Consensus 120 ~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~-------------~----~ 182 (455)
-|+.+..+...+..+...|.++|++.....++++++.+...+ +|+-||..-...++ + .
T Consensus 148 lr~~l~~l~~~l~~l~~~L~~lA~~~~~t~m~grTH~Q~A~P-----~T~G~~~~~~~~~l~r~~~rL~~~~~~~~~~pl 222 (450)
T cd01596 148 ALALLERLLPALEQLQDALDAKAEEFADIVKIGRTHLQDAVP-----LTLGQEFSGYAAQLARDIARIEAALERLRELNL 222 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCee-----ehHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 377788888899999999999999999999999999877443 22223332222111 1 1
Q ss_pred HHHhhcccccchhhH-------HHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccc
Q psy3416 183 RAALAGTTHHINRYL-------TAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNP---QFN 251 (455)
Q Consensus 183 ~~~~~gt~~~~~~~~-------~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~---~~~ 251 (455)
|++++||++++++.+ ++..|||. .+..|+++++++||++.+++.++++++.+++|||+|+++|+|+ +++
T Consensus 223 Gg~A~Gt~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~d~~~~rd~~~e~~~~la~~~~~l~ria~Dl~~~ss~~~~e~g 302 (450)
T cd01596 223 GGTAVGTGLNAPPGYAEKVAAELAELTGLPFVTAPNLFEATAAHDALVEVSGALKTLAVSLSKIANDLRLLSSGPRAGLG 302 (450)
T ss_pred CCcceeCCCCCChhHHHHHHHHHHHHhCCCCccCcCHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCCe
Confidence 344568999999876 58999999 5789999999999999999999999999999999999999975 355
Q ss_pred c
Q psy3416 252 F 252 (455)
Q Consensus 252 ~ 252 (455)
+
T Consensus 303 e 303 (450)
T cd01596 303 E 303 (450)
T ss_pred e
Confidence 4
No 85
>cd01362 Fumarase_classII Class II fumarases. This subgroup contains Escherichia coli fumarase C, human mitochondrial fumarase, and related proteins. It is a member of the Lyase class I family. Members of this family for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. These proteins are active as tetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. Fumarase catalyzes the reversible hydration/dehydration of fumarate to L-malate during the Krebs cycle.
Probab=98.49 E-value=2.3e-07 Score=98.04 Aligned_cols=128 Identities=13% Similarity=0.115 Sum_probs=98.7
Q ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHH-----------------HH
Q psy3416 121 RDFVIE-FISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL-----------------RQ 182 (455)
Q Consensus 121 Rd~~~e-~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~-----------------~~ 182 (455)
|+.+.+ +...+..+...+.++|.+.....++++++.+...+. |+=||..-...++ ..
T Consensus 149 r~~l~~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~-----TfG~~~~~~~~~l~r~~~rL~~~~~r~~~~~l 223 (455)
T cd01362 149 ALALQERLLPALKHLIDALDAKADEFKDIVKIGRTHLQDATPL-----TLGQEFSGYAAQLEHAIARIEAALPRLYELAL 223 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCCCCeee-----cHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc
Confidence 666655 777888899999999999999999999998774431 1112221111110 11
Q ss_pred HHHhhcccccchhh-------HHHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcc---ccc
Q psy3416 183 RAALAGTTHHINRY-------LTAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNP---QFN 251 (455)
Q Consensus 183 ~~~~~gt~~~~~~~-------~~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~---~~~ 251 (455)
|++++||.+.+++. +++..|||. .+..|+++++++||++.+++.+++.++.+++|||+|+++|+|. +++
T Consensus 224 Gg~A~Gt~~~~~~~~~~~v~~~~a~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~l~ria~Dl~~~~s~~~~e~g 303 (455)
T cd01362 224 GGTAVGTGLNAHPGFAEKVAAELAELTGLPFVTAPNKFEALAAHDALVEASGALKTLAVSLMKIANDIRWLGSGPRCGLG 303 (455)
T ss_pred CCeeccCCccCChhHHHHHHHHHHHHhCCCCccCCCHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccCCCc
Confidence 44357999999986 568999999 5789999999999999999999999999999999999999975 465
Q ss_pred cc
Q psy3416 252 FL 253 (455)
Q Consensus 252 ~~ 253 (455)
++
T Consensus 304 ev 305 (455)
T cd01362 304 EL 305 (455)
T ss_pred eE
Confidence 54
No 86
>PRK07380 adenylosuccinate lyase; Provisional
Probab=98.48 E-value=2.4e-06 Score=89.87 Aligned_cols=192 Identities=15% Similarity=0.194 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcC
Q psy3416 16 IIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHH 95 (455)
Q Consensus 16 ~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~ 95 (455)
.....+..+.+.|.+...+....++.|+| .||-.+|.+...+......+..++.+|.+.+..+.. .....++.|.++.
T Consensus 65 ~~~h~v~a~v~~l~~~~g~~~~~vH~G~T-s~Di~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~-~~~~t~m~grTH~ 142 (431)
T PRK07380 65 EVRHDVIAFLTNVNEYVGDAGRYIHLGMT-SSDVLDTGLALQLVASLDLLLEELEDLIQAIRYQAR-EHRNTVMIGRSHG 142 (431)
T ss_pred HhCCChHHHHHHHHHHHHHhhccccCCCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCeeechhcC
Confidence 33344555666676666677888999999 999999999999999999999999998888887765 4566666676654
Q ss_pred cchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCc
Q psy3416 96 INRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNP 175 (455)
Q Consensus 96 ~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP 175 (455)
.+ ...-.+|++ ++.++..+.-.+.|+..=...+. .. |
T Consensus 143 Q~--A~P~TfG~~------------------~a~~~~~l~r~~~RL~~~~~~~~-----~~--~---------------- 179 (431)
T PRK07380 143 IH--AEPITFGFK------------------LAGWLAETLRNRERLVRLREDIA-----VG--Q---------------- 179 (431)
T ss_pred cc--ceechHHHH------------------HHHHHHHHHHHHHHHHHHHHHHh-----cc--C----------------
Confidence 43 111122222 11122222222222211100000 00 0
Q ss_pred chHHHHHHHHhhcccccchhh---HHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy3416 176 DVKDLRQRAALAGTTHHINRY---LTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNF 252 (455)
Q Consensus 176 ~~~e~~~~~~~~gt~~~~~~~---~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~ 252 (455)
+ .+.+||.+++++. +++..|||..+..+ .++++||++.+++.+++.++++++|||+|+++|++ .++
T Consensus 180 -----l--~GAvGt~~~~~~~~~~~~a~~LGl~~~~~~--~~v~~rd~~~e~~~~la~~a~~L~kia~Di~~l~~--~~~ 248 (431)
T PRK07380 180 -----I--SGAVGTYANTDPRVEAITCQKLGLKPDTAS--TQVISRDRHAEYVQTLALVGASLERFATEIRNLQR--TDV 248 (431)
T ss_pred -----c--chhhcCcccCChhHHHHHHHHcCCCCCCCC--CCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--cCc
Confidence 0 1223666666665 57888999976543 36799999999999999999999999999999986 567
Q ss_pred ccccccccccC
Q psy3416 253 LTLPESFLTGS 263 (455)
Q Consensus 253 ~~lp~~~~~~S 263 (455)
.+++|.+..|.
T Consensus 249 ~el~e~~~~g~ 259 (431)
T PRK07380 249 LEVEEYFAKGQ 259 (431)
T ss_pred eeecccCCCCC
Confidence 78888776664
No 87
>PRK09053 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=98.46 E-value=9.4e-07 Score=93.57 Aligned_cols=170 Identities=18% Similarity=0.183 Sum_probs=108.7
Q ss_pred HhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCC
Q psy3416 34 KHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSEN 113 (455)
Q Consensus 34 ~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n 113 (455)
+..+.|..|+| .||..||.+-..+......+...+.+|.+.+..... .+...++.|.++..+ ...-.+|++
T Consensus 97 ~~~~~vH~G~S-snDi~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~-~~~~t~~~GrTH~Q~--A~P~T~G~~----- 167 (452)
T PRK09053 97 EAARYVHWGAT-SQDIIDTGLVLQLRDALDLLEPDLDRLCDALATLAA-RHRATPMVGRTWLQQ--ALPVTLGLK----- 167 (452)
T ss_pred chhccccCCCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCeeehhccCCc--ceechHHHH-----
Confidence 44678999999 999999999999999999999999998888877654 456666667766543 111112222
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCcc-ccccCCCCCcchHHHHHHHHhhccccc
Q psy3416 114 SLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTG-SSIMPQKKNPDVKDLRQRAALAGTTHH 192 (455)
Q Consensus 114 ~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~g-SStMP~K~NP~~~e~~~~~~~~gt~~~ 192 (455)
++.+...+.-.+.|+..= ...+..+ |-+..+| .+++|++ ++.
T Consensus 168 -------------~~~~~~~l~r~~~RL~~~-----~~~~~~~--~lGgavGt~~~~~~~-----------------~~~ 210 (452)
T PRK09053 168 -------------FAGWLDALLRHRQRLAAL-----RPRALVL--QFGGAAGTLASLGEQ-----------------ALP 210 (452)
T ss_pred -------------HHHHHHHHHHHHHHHHHH-----Hhhhhhc--cccchhhcccccccc-----------------hHH
Confidence 111111111111111110 0111111 1111122 2333322 222
Q ss_pred chhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3416 193 INRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 253 (455)
Q Consensus 193 ~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~ 253 (455)
+ ..+++..|||+.+..+ +.++||++++++++++.++.+|+|||+|+++|++++++++
T Consensus 211 v-~~~~a~~LGl~~~~~~---~~~~rD~~~e~~~~la~la~~L~kia~Di~ll~~~e~gev 267 (452)
T PRK09053 211 V-AQALAAELQLALPALP---WHTQRDRIAEFASALGLLAGTLGKIARDVSLLMQTEVGEV 267 (452)
T ss_pred H-HHHHHHHcCCCCCCCC---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 3 2457889999976654 4589999999999999999999999999999999887753
No 88
>PRK05975 3-carboxy-cis,cis-muconate cycloisomerase; Provisional
Probab=98.45 E-value=2.6e-06 Score=87.20 Aligned_cols=201 Identities=22% Similarity=0.221 Sum_probs=134.4
Q ss_pred HHHHHHHHHHH-HHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHH
Q psy3416 22 LTMIKHLTDLS-DKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYL 100 (455)
Q Consensus 22 ~~l~~~L~~~A-~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~ 100 (455)
..+.+.|.+.. .+..+.++.|+| .||-.||.+-..+......+..++.+|.+.+..... .....++.|.++..+ .
T Consensus 84 ~~~v~~l~~~~g~~~~~~vH~G~T-snDi~dTa~~L~lr~~l~~l~~~L~~l~~~L~~lA~-~~~~t~m~grTH~Q~--A 159 (351)
T PRK05975 84 PALVRQLRAAVGEEAAAHVHFGAT-SQDVIDTSLMLRLKAASEILAARLGALIARLDALEA-TFGQNALMGHTRMQA--A 159 (351)
T ss_pred HHHHHHHHHHhCchhhCcccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCeeecccCCCc--C
Confidence 34555555555 345678999999 999999999999998889999999998887777654 455666667666543 1
Q ss_pred HHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccc-cccCCCCCcchHH
Q psy3416 101 TAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGS-SIMPQKKNPDVKD 179 (455)
Q Consensus 101 ~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gS-StMP~K~NP~~~e 179 (455)
..-.+|++ ++.+...+.-.+.|+..=... +.. .|-+..+|. +.+
T Consensus 160 ~P~TfG~~------------------~a~~~~~l~r~~~rL~~~~~~-----~~~--~~lGGAvGt~~~~---------- 204 (351)
T PRK05975 160 IPITVADR------------------LASWRAPLLRHRDRLEALRAD-----VFP--LQFGGAAGTLEKL---------- 204 (351)
T ss_pred eehhHHHH------------------HHHHHHHHHHHHHHHHHHHHH-----hhh--cCCccHhccCccC----------
Confidence 11122222 112222222222222211110 000 111111121 111
Q ss_pred HHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccc
Q psy3416 180 LRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESF 259 (455)
Q Consensus 180 ~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~ 259 (455)
|+.++.++.+++..|||..+. .++++||+++++++.++.++.+++|||+|+++|++.+ +++.+|.
T Consensus 205 --------~~~~~~~~~~~a~~LGl~~~~----~~~~~rD~~~e~~~~la~la~~l~kiA~Di~ll~s~e-gev~~~~-- 269 (351)
T PRK05975 205 --------GGKAAAVRARLAKRLGLEDAP----QWHSQRDFIADFAHLLSLVTGSLGKFGQDIALMAQAG-DEISLSG-- 269 (351)
T ss_pred --------CCcHHHHHHHHHHHhCcCCCc----chhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CcccCCC--
Confidence 122345567788999997442 4689999999999999999999999999999999999 9999997
Q ss_pred cccCccCccccChhHHH
Q psy3416 260 LTGSSIMPQKKNPDVLE 276 (455)
Q Consensus 260 ~~~SS~mp~K~np~~~e 276 (455)
.+|||+|||||||+.+|
T Consensus 270 ~~GSS~MPhKrNPv~~E 286 (351)
T PRK05975 270 GGGSSAMPHKQNPVAAE 286 (351)
T ss_pred CCccCCCCCCcCcHHHH
Confidence 69999999999997743
No 89
>PRK08540 adenylosuccinate lyase; Reviewed
Probab=98.39 E-value=3.2e-06 Score=89.51 Aligned_cols=195 Identities=14% Similarity=0.110 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHH-HHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCc
Q psy3416 18 IELLLTMIKHLTDLS-DKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHI 96 (455)
Q Consensus 18 ~~~l~~l~~~L~~~A-~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~ 96 (455)
...+..+.+.|.++. .+....++.|+| .||..||.+-..+......+.+.+.+|.+.+..... .+....+.|.++..
T Consensus 75 ~~~v~~~e~~L~~~~~~~~~~~vH~g~S-~nDi~~Ta~~L~lr~~l~~l~~~L~~l~~~L~~~A~-~~~~~~m~grTH~Q 152 (449)
T PRK08540 75 HHDIMAVVKALSEVCEGDAGEYVHFGAT-SNDIIDTATALQLKDSLEILEEKLKKLRGVLLKKAE-EHKNTVCIGRTHGQ 152 (449)
T ss_pred CCCcHHHHHHHHHHhhhhhhcceecCcc-HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCchhhhcCCC
Confidence 344556777777777 578899999999 999999999999988888888888888887776654 34455555665544
Q ss_pred chHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccc-cccCCCCCc
Q psy3416 97 NRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGS-SIMPQKKNP 175 (455)
Q Consensus 97 ~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gS-StMP~K~NP 175 (455)
+ ...-.+|++ +..+...+.-.+.|+..=... +.. .|-+...|+ .++++
T Consensus 153 ~--A~P~T~G~~------------------~~~~~~~l~r~~~rL~~~~~~-----~~~--~~lGgavGt~~a~~~---- 201 (449)
T PRK08540 153 H--AVPTTYGMR------------------FAIWASEIQRHLERLEQLKPR-----VCV--GQMTGAVGTQAAFGE---- 201 (449)
T ss_pred c--CeehhHHHH------------------HHHHHHHHHHHHHHHHHHHHh-----hhe--ccccccccchhhCCC----
Confidence 3 111111111 111122222222222111111 111 111112222 13333
Q ss_pred chHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccc
Q psy3416 176 DVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTL 255 (455)
Q Consensus 176 ~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~l 255 (455)
+++.++ ..++..|||+.+..|. ++++||+++++++.++.++.+++|||+|+++|++.++++ +
T Consensus 202 -------------~~~~i~-~~~a~~LGl~~~~~~~--~~~~rd~~~e~~~~l~~~a~~l~kia~Dl~l~s~~e~ge--i 263 (449)
T PRK08540 202 -------------KGIEIQ-KRVMEILGLKPVLISN--QVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQRTEIGE--V 263 (449)
T ss_pred -------------ccHHHH-HHHHHHcCCCCCCCcC--CccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh--h
Confidence 334444 3578899999887664 579999999999999999999999999999999987764 4
Q ss_pred cccccccC
Q psy3416 256 PESFLTGS 263 (455)
Q Consensus 256 p~~~~~~S 263 (455)
++.+..+.
T Consensus 264 ~e~~~~~~ 271 (449)
T PRK08540 264 EEEFGKKQ 271 (449)
T ss_pred hcccCCCC
Confidence 66555443
No 90
>PRK08470 adenylosuccinate lyase; Provisional
Probab=98.35 E-value=1.1e-05 Score=85.13 Aligned_cols=189 Identities=14% Similarity=0.187 Sum_probs=121.0
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchH
Q psy3416 20 LLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY 99 (455)
Q Consensus 20 ~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~ 99 (455)
.+..+...|.++..+....++.|+| .||-.+|.+...+......+..++.+|.+.+..+.. .....++.|.++...
T Consensus 69 dv~~~v~~L~e~~g~~~~~vH~G~T-snDi~dTa~~L~lr~~l~~l~~~l~~l~~~L~~lA~-~~~~t~m~grTH~Q~-- 144 (442)
T PRK08470 69 DLIAFLTSVSESLGEESRFVHYGMT-SSDCIDTAVALQMRDSLKLIIEDVKNLMEAIKKRAL-EHKDTLMVGRSHGIH-- 144 (442)
T ss_pred ChHHHHHHHHHHccccccceecCCC-hhchHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhCCCeeecccCCCc--
Confidence 3344555666666666788999999 999999999999998889999999998888877765 455666667766543
Q ss_pred HHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccc-cccCCCCCcchH
Q psy3416 100 LTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGS-SIMPQKKNPDVK 178 (455)
Q Consensus 100 ~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gS-StMP~K~NP~~~ 178 (455)
...-.+|++ ++.++..+.-.+.|+..=... +... |-+..+|. +..|
T Consensus 145 A~P~TfG~~------------------~a~~~~~l~r~~~RL~~~~~~-----~~~~--~lgGAvGt~a~~~-------- 191 (442)
T PRK08470 145 GEPITFGLV------------------LAIWYDEIKRHLKALEHTMEV-----ISVG--KISGAMGNFAHAP-------- 191 (442)
T ss_pred CeehhHHHH------------------HHHHHHHHHHHHHHHHHHHHH-----hhhh--cCcchhcccccCC--------
Confidence 111122222 111222222222222211000 0000 10111111 1111
Q ss_pred HHHHHHHhhcccccchhhHHHhhhcCCC-CCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q psy3416 179 DLRQRAALAGTTHHINRYLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 257 (455)
Q Consensus 179 e~~~~~~~~gt~~~~~~~~~a~~l~~~~-~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~ 257 (455)
..+ +.+++..|||.. +..| ++++||+++++++++++++++++|||+|+++|+++++ .+++|
T Consensus 192 ------------~~v-~~~~a~~LGl~~~~~~~---~v~~RD~~~e~~~~La~~a~~L~ria~Di~~l~~~E~--~ev~e 253 (442)
T PRK08470 192 ------------LEL-EELVCEELGLKPAPVSN---QVIQRDRYARLASALALLASSCEKIAVAIRHLQRTEV--YEAEE 253 (442)
T ss_pred ------------hHH-HHHHHHHcCCCCCCCCC---CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ceecc
Confidence 111 346788899995 4444 6799999999999999999999999999999999876 67888
Q ss_pred cccccC
Q psy3416 258 SFLTGS 263 (455)
Q Consensus 258 ~~~~~S 263 (455)
.+..|.
T Consensus 254 ~~~~g~ 259 (442)
T PRK08470 254 YFSKGQ 259 (442)
T ss_pred cCCCCC
Confidence 777665
No 91
>cd01594 Lyase_I_like Lyase class I_like superfamily: contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase, which catalyze similar beta-elimination reactions. Lyase class I_like superfamily of enzymes that catalyze beta-elimination reactions and are active as homotetramers. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. This superfamily contains the lyase class I family, histidine ammonia-lyase and phenylalanine ammonia-lyase. The lyase class I family comprises proteins similar to class II fumarase, aspartase, adenylosuccinate lyase, argininosuccinate lyase, and 3-carboxy-cis, cis-muconate lactonizing enzyme which, for the most part catalyze similar beta-elimination reactions in which a C-N or C-O bond is cleaved with the release of fumarate as one of the products. Histidine or phenylalanine ammonia-lyase catalyze a beta-elimination of ammonia from histidine and phenylalanine, respective
Probab=98.32 E-value=1.5e-06 Score=83.36 Aligned_cols=27 Identities=44% Similarity=0.373 Sum_probs=22.3
Q ss_pred CCccccccCCCCCcchHHHHHHHHhhc
Q psy3416 162 FLTGSSIMPQKKNPDVKDLRQRAALAG 188 (455)
Q Consensus 162 ~~~gSStMP~K~NP~~~e~~~~~~~~g 188 (455)
.++|||+||||+||+.+|.+...+...
T Consensus 161 ~~~gSS~mp~k~Np~~~e~~~~~~~~~ 187 (231)
T cd01594 161 GQPGSSIMPQKVNPVAAELVRGLAGLV 187 (231)
T ss_pred CCCCCcCCCCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999887655443
No 92
>COG0114 FumC Fumarase [Energy production and conversion]
Probab=98.15 E-value=2.8e-06 Score=85.86 Aligned_cols=152 Identities=21% Similarity=0.264 Sum_probs=131.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecc------cCCCCccccccCCCCC------cchHHHHHHHHhhcccc
Q psy3416 124 VIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTL------PESFLTGSSIMPQKKN------PDVKDLRQRAALAGTTH 191 (455)
Q Consensus 124 ~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~------~e~~~~gSStMP~K~N------P~~~e~~~~~~~~gt~~ 191 (455)
.-++...|..+-.+|.+.++++......|.+|++- ..+|.++.+..-|-.. |.+.|+.+|+++.||+.
T Consensus 156 ~~~LiPaL~~L~~~L~~Ka~~~~~iVKiGRTHLqDAtPlTlGQE~sGy~~ql~~~~~~i~~~l~~l~eLAiGGTAVGTGl 235 (462)
T COG0114 156 VNRLIPALKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTLGQEFSGYAAQLEHALERIEASLPHLYELAIGGTAVGTGL 235 (462)
T ss_pred HHHhHHHHHHHHHHHHHHHHHHhhhhhcCcccccccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCcccccCc
Confidence 34566778889999999999999999999999854 3334456655544433 44578888999999999
Q ss_pred cchhhH-------HHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---ccccccccccc
Q psy3416 192 HINRYL-------TAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ---FNFLTLPESFL 260 (455)
Q Consensus 192 ~~~~~~-------~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~---~~~~~lp~~~~ 260 (455)
++.+.+ .+.++|++ .+.+|-+++.+.+|.++++.+.++-++..|-|||+|++.+.|+| ++++.+|+ ..
T Consensus 236 Na~p~f~ekva~~i~~~TG~~F~~a~NkF~al~~hd~lv~~~Gal~~lA~~L~KIAnDiR~l~SGPr~GLgEi~lPe-ne 314 (462)
T COG0114 236 NAHPEFGEKVAEELAELTGLPFVTAPNKFEALAAHDALVEASGALRTLAVSLMKIANDIRWLGSGPRCGLGEIELPE-NE 314 (462)
T ss_pred CCCccHHHHHHHHHHHHhCCCcccCCcHHHHHhcchHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCC-CC
Confidence 999988 56889998 88999999999999999999999999999999999999999999 89999997 99
Q ss_pred ccCccCccccChhHHH
Q psy3416 261 TGSSIMPQKKNPDVLE 276 (455)
Q Consensus 261 ~~SS~mp~K~np~~~e 276 (455)
.||||||.|+||..+|
T Consensus 315 PGSSIMPGKVNPtq~E 330 (462)
T COG0114 315 PGSSIMPGKVNPTQCE 330 (462)
T ss_pred CCccCCCCCCCchhHH
Confidence 9999999999998876
No 93
>PRK09285 adenylosuccinate lyase; Provisional
Probab=97.97 E-value=9.2e-05 Score=78.42 Aligned_cols=175 Identities=14% Similarity=0.141 Sum_probs=105.8
Q ss_pred HHHHHHHHHHHHH------HhcCcccccccccCccccchHHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCCccccCCCC
Q psy3416 21 LLTMIKHLTDLSD------KHAKTIMPGFTHFQIAQPISLGHYLLAYASM-FQRDINRLIDCRKRVNISPLGSAALAGTT 93 (455)
Q Consensus 21 l~~l~~~L~~~A~------~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~-L~r~~~rL~~~~~r~~~~~lGga~~~G~~ 93 (455)
+..+...|.++.. +....++.|+| .||-.+|.+..++...... +..++.+|.+.+..+.. .....++.|.+
T Consensus 93 v~a~~~~l~~~~~~~~~~~~~~~~vH~G~T-s~Di~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~-~~~~t~m~grT 170 (456)
T PRK09285 93 VKAVEYFLKEKLAGLPELEAVSEFIHFACT-SEDINNLSHALMLKEAREEVLLPALRELIDALKELAH-EYADVPMLSRT 170 (456)
T ss_pred hHHHHHHHHHHhcccCcchhHHhHccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCeeecee
Confidence 3455555665553 45677999999 9999999999999988887 89999998888887765 46667777777
Q ss_pred cCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccc--ccc--
Q psy3416 94 HHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGS--SIM-- 169 (455)
Q Consensus 94 ~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gS--StM-- 169 (455)
+..+- ..-.+|++ ++.+...+.-.+.|+..= . .++.+ ...+|+ +.+
T Consensus 171 H~Q~A--~P~TfG~~------------------~a~~~~~l~r~~~rL~~~-~-----~~g~~----~GAvGt~~a~~~~ 220 (456)
T PRK09285 171 HGQPA--TPTTLGKE------------------MANVAYRLERQLKQLEAV-E-----ILGKI----NGAVGNYNAHLAA 220 (456)
T ss_pred cCCCC--eeehHHHH------------------HHHHHHHHHHHHHHHHHH-H-----Hhhhc----ccccccHHHHhhh
Confidence 65431 11112221 111111111111111110 0 00000 001111 111
Q ss_pred -CCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3416 170 -PQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDS-ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN 247 (455)
Q Consensus 170 -P~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a-~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s 247 (455)
|+.--|. +.+.+ +..|||.. |...+ +.+||++.++++++++++.+++|||+|+++|++
T Consensus 221 ~~~~~~~~----------------v~~~~-~~~LGL~~---~~~~~~v~~rD~~~e~~~~la~~a~~L~kia~Di~ll~~ 280 (456)
T PRK09285 221 YPEVDWHA----------------FSREF-VESLGLTW---NPYTTQIEPHDYIAELFDAVARFNTILIDLDRDVWGYIS 280 (456)
T ss_pred cCCccHHH----------------HHHHH-HHHhCCCC---CCCccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 2211011 22223 33788775 34554 799999999999999999999999999999987
No 94
>cd01598 PurB PurB_like adenylosuccinases (adenylsuccinate lyase, ASL). This subgroup contains EcASL, the product of the purB gene in Escherichia coli, and related proteins. It is a member of the Lyase class I family of the Lyase_I superfamily. Members of the Lyase class I family function as homotetramers to catalyze similar beta-elimination reactions in which a Calpha-N or Calpha-O bond is cleaved with the subsequent release of fumarate as one of the products. The four active sites of the homotetrameric enzyme are each formed by residues from three different subunits. ASL catalyzes two non-sequential steps in the de novo purine biosynthesis pathway: the conversion of 5-aminoimidazole-(N-succinylocarboxamide) ribotide (SAICAR) into 5-aminoimidazole-4-carboxamide ribotide (AICAR) and; the conversion of adenylsuccinate (SAMP) into adenosine monophosphate (AMP).
Probab=97.86 E-value=0.001 Score=69.97 Aligned_cols=209 Identities=15% Similarity=0.110 Sum_probs=126.7
Q ss_pred HHHHHHHHHHHHHHHH------HhcCcccccccccCccccchHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCccccC
Q psy3416 18 IELLLTMIKHLTDLSD------KHAKTIMPGFTHFQIAQPISLGHYLLAYA-SMFQRDINRLIDCRKRVNISPLGSAALA 90 (455)
Q Consensus 18 ~~~l~~l~~~L~~~A~------~~~~tvm~grTh~Q~A~P~T~G~~la~~~-~~L~r~~~rL~~~~~r~~~~~lGga~~~ 90 (455)
-..+..+.+.|.++.. +....++.|+| .||..+|.+...+..-. +.+...+.+|.+.+..... .....++.
T Consensus 68 ~hdv~al~~~l~~~~g~~~~~~~~~~~vH~G~T-snDi~dTa~~L~lr~~l~~~l~~~L~~l~~~L~~lA~-~~~dt~m~ 145 (425)
T cd01598 68 NHDVKAVEYFLKEKFETLGLLKKIKEFIHFACT-SEDINNLAYALMIKEARNEVILPLLKEIIDSLKKLAK-EYADVPML 145 (425)
T ss_pred CCCcHHHHHHHHHHhcccccchhhhhHhccCCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCeee
Confidence 3344555566666654 35568999999 99999999999988665 5667888887777776654 45666666
Q ss_pred CCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccC
Q psy3416 91 GTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMP 170 (455)
Q Consensus 91 G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP 170 (455)
|.++..+ ...-.+|++ +..+...+...+.|+..= . ..+. + +..+|+-..+
T Consensus 146 GrTH~Q~--A~P~TfG~~------------------~a~w~~~L~r~~~RL~~~-~-----~~g~--~--gGavGt~~~~ 195 (425)
T cd01598 146 SRTHGQP--ATPTTLGKE------------------LAVFVYRLERQYKQLKQI-E-----ILGK--F--NGAVGNFNAH 195 (425)
T ss_pred cccCCcc--CeehhHHHH------------------HHHHHHHHHHHHHHHHHH-H-----Hhhe--e--eCchhhhhhh
Confidence 7765443 111112222 111222222222222110 0 0000 0 0011111111
Q ss_pred CCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3416 171 QKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDS-ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 249 (455)
Q Consensus 171 ~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a-~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~ 249 (455)
....|.. .+......++..|||..+. ..+ +.+||++.++++++++++.+++|||+|+++|++..
T Consensus 196 ~~~~~~~------------~~~~~~~~~a~~LgL~~~~---~~~~v~~rD~~~e~~~~La~la~~L~kia~Di~ll~s~g 260 (425)
T cd01598 196 LVAYPDV------------DWRKFSEFFVTSLGLTWNP---YTTQIEPHDYIAELFDALARINTILIDLCRDIWGYISLG 260 (425)
T ss_pred hhccCcc------------cHHHHHHHHHHHhCcCCCC---cccchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence 0000000 0112233456778887642 234 79999999999999999999999999999999974
Q ss_pred cccccccccccccCccCccccChhH
Q psy3416 250 FNFLTLPESFLTGSSIMPQKKNPDV 274 (455)
Q Consensus 250 ~~~~~lp~~~~~~SS~mp~K~np~~ 274 (455)
+ ..++++..++|||+|||||||+.
T Consensus 261 e-~~e~~~~~~~GSS~MPhKrNPv~ 284 (425)
T cd01598 261 Y-FKQKVKKGEVGSSTMPHKVNPID 284 (425)
T ss_pred c-eeecCCCCCCCcCCCCCCcCchH
Confidence 3 45567778999999999999954
No 95
>PLN02848 adenylosuccinate lyase
Probab=97.63 E-value=0.0024 Score=67.75 Aligned_cols=176 Identities=11% Similarity=0.078 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHHHH---H---hcCcccccccccCccccchHHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCCccccCC
Q psy3416 19 ELLLTMIKHLTDLSD---K---HAKTIMPGFTHFQIAQPISLGHYLLAYASM-FQRDINRLIDCRKRVNISPLGSAALAG 91 (455)
Q Consensus 19 ~~l~~l~~~L~~~A~---~---~~~tvm~grTh~Q~A~P~T~G~~la~~~~~-L~r~~~rL~~~~~r~~~~~lGga~~~G 91 (455)
..+..+...+.++.. + +...++.|+| .||-..|.+..++...... +..++.+|.+.+..+.. .++..++.|
T Consensus 94 hdv~a~~~~l~~~~~~~~~~~~~~~~vH~G~T-sqDi~dTa~~L~lr~a~~~~l~~~L~~l~~aL~~lA~-~~~dt~m~G 171 (458)
T PLN02848 94 HDVKAVEYFLKQKCKSHPELAKVLEFFHFACT-SEDINNLSHALMLKEGVNSVVLPTMDEIIKAISSLAH-EFAYVPMLS 171 (458)
T ss_pred CCcHHHHHHHHHHhccccchhhhhCcccCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCeeec
Confidence 344555566666663 2 5578999999 9999999999999988888 99999998888887765 466667677
Q ss_pred CCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCcccc-cc-
Q psy3416 92 TTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSS-IM- 169 (455)
Q Consensus 92 ~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSS-tM- 169 (455)
.++..+ ...-.+|++. +.+...+...+.++- ++. +. +. . ...+|.- .+
T Consensus 172 RTH~Q~--A~PiTfG~~~------------------a~w~~~L~r~~~rL~-~~~-l~----g~--~--~GAvGt~aa~~ 221 (458)
T PLN02848 172 RTHGQP--ASPTTLGKEM------------------ANFAYRLSRQRKQLS-EVK-IK----GK--F--AGAVGNYNAHM 221 (458)
T ss_pred cccCcc--ceeehHHHHH------------------HHHHHHHHHHHHHHH-HHH-hc----cE--e--ecccchhhhhh
Confidence 776543 1111122211 111111111122211 010 00 00 0 0111211 11
Q ss_pred ---CCCCC-cchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3416 170 ---PQKKN-PDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIF 245 (455)
Q Consensus 170 ---P~K~N-P~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~ 245 (455)
|+ .| +... ..++..|||...+. ...+++||++++++++++.++.++.||++|+..+
T Consensus 222 ~~~~~-~d~~~v~-----------------~~la~~LGL~~~~~--~~~v~~rD~~~e~~~~La~~a~~l~kia~Di~~~ 281 (458)
T PLN02848 222 SAYPE-VDWPAVA-----------------EEFVTSLGLTFNPY--VTQIEPHDYMAELFNAVSRFNNILIDFDRDIWSY 281 (458)
T ss_pred hccCC-CCHHHHH-----------------HHHHHHhCCCCCCc--hhhHhccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 21 12 2221 23456788873111 2357999999999999999999999999996555
Q ss_pred h
Q psy3416 246 M 246 (455)
Q Consensus 246 ~ 246 (455)
+
T Consensus 282 ~ 282 (458)
T PLN02848 282 I 282 (458)
T ss_pred h
Confidence 4
No 96
>PF08328 ASL_C: Adenylosuccinate lyase C-terminal; InterPro: IPR013539 This domain is found at the C terminus of adenylosuccinate lyase(ASL; PurB in Escherichia coli). It has been identified in bacteria, eukaryotes and archaea and is found together with the lyase domain IPR000362 from INTERPRO. ASL catalyses the cleavage of succinylaminoimidazole carboxamide ribotide to aminoimidazole carboxamide ribotide and fumarate and the cleavage of adenylosuccinate to adenylate and fumarate []. ; GO: 0004018 N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity, 0006188 IMP biosynthetic process; PDB: 2HVG_A 2QGA_C 2PTS_A 2PTR_A 2PTQ_B 3BHG_A 3GZH_A.
Probab=96.08 E-value=0.023 Score=48.43 Aligned_cols=74 Identities=14% Similarity=0.223 Sum_probs=56.0
Q ss_pred ccccccc--cchHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhccCH-hHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q psy3416 304 NKDLQED--KLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGF-SISTDVADYLVKKGVPFRTSHEIVGSIIK 379 (455)
Q Consensus 304 ~~d~~~~--~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~-~~a~~la~~L~~~g~~~r~Ah~~v~~~~~ 379 (455)
.||++++ ...+.-++....-++..+.+.+++|+||+++|.+.+...| ++||.+-..|-+.|++ ++|+.++++.+
T Consensus 4 QRDLtDSTvlRNiGva~~~sliA~~s~lkGl~Kl~vn~~~l~~dL~~nWeVlaEpIQTvmRr~g~~--~pYE~LK~lTR 80 (115)
T PF08328_consen 4 QRDLTDSTVLRNIGVAFGHSLIAYKSLLKGLGKLEVNEERLAEDLDENWEVLAEPIQTVMRRYGIP--NPYEKLKELTR 80 (115)
T ss_dssp TB-THHHHHHTTHHHHHHHHHHHHHHHHHHHHTEEE-HHHHHHHHCT-GGGGHHHHHHHHHHTT-S--SHHHHHHHHHT
T ss_pred cccchHHHHHHhhhHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHCHHHHHHHHHHHHHHcCCC--CHHHHHHHHHc
Confidence 3555443 3356666667777888889999999999999999997666 7888888888776887 89999999886
No 97
>PF10415 FumaraseC_C: Fumarase C C-terminus; InterPro: IPR018951 Fumarase C catalyses the stereo-specific interconversion of fumarate to L-malate as part of the Krebs cycle. The full-length protein forms a tetramer with visible globular shape. FumaraseC_C is the C-terminal 65 residues referred to as domain 3. The core of the molecule consists of a bundle of 20 alpha-helices from the five-helix bundle of domain 2. The projections from the core of the tetramer are generated from domains 1 and 3 of each subunit []. This entry does not appear to be part of either the active site or the activation site but is helical in structure forming a little bundle. ; GO: 0016829 lyase activity, 0006099 tricarboxylic acid cycle; PDB: 3RRP_A 3OCE_D 3OCF_D 3E04_B 3GTD_A 3R6V_F 3R6Q_F 1J3U_B 1FUR_A 1YFE_A ....
Probab=95.85 E-value=0.011 Score=44.06 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHcCCCchhhhHHHHhhhhcCCc-hHHHHhcChhhhhh
Q psy3416 370 SHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYIS-DDIIDILCIENSIK 418 (455)
Q Consensus 370 Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~~~~~-~~l~~~ldp~~~v~ 418 (455)
+|+...+++++|.++|++++|+..+. ..++ +++.++|||++++.
T Consensus 10 GYe~aa~iAk~A~~~g~svre~v~~~-----g~lt~ee~d~ll~p~~mt~ 54 (55)
T PF10415_consen 10 GYEKAAEIAKEALAEGRSVREVVLEE-----GLLTEEELDELLDPERMTN 54 (55)
T ss_dssp HHHHHHHHHHHHHHHT--HHHHHHHT-----TSS-HHHHHHHTSHHHHTT
T ss_pred ccHHHHHHHHHHHHcCCCHHHHHHHc-----CCCCHHHHHHHcCHHHcCC
Confidence 79999999999999999999998863 4454 58999999998764
No 98
>KOG1317|consensus
Probab=95.38 E-value=0.033 Score=55.36 Aligned_cols=170 Identities=20% Similarity=0.226 Sum_probs=135.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecc------cCCCCccccccCCCC------CcchHHHHHHHHhhc
Q psy3416 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTL------PESFLTGSSIMPQKK------NPDVKDLRQRAALAG 188 (455)
Q Consensus 121 Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~------~e~~~~gSStMP~K~------NP~~~e~~~~~~~~g 188 (455)
++.--++...+..+-.+|...+.++......|.++.+- ..+|.++-.-.-.-. -|.+-++.+++++.|
T Consensus 178 ~ei~~~L~P~l~~L~~aL~aKs~EfkdIiKIGRTHtqDAvPLTLGQEFsgY~qQ~~ngl~Rv~~~lpr~y~LA~GGTAVG 257 (487)
T KOG1317|consen 178 TEINSRLIPALTNLRDALEAKSKEFKDIIKIGRTHTQDAVPLTLGQEFSGYVQQVTNGLQRVAATLPRLYQLAQGGTAVG 257 (487)
T ss_pred HHHHHhhhHHHHHHHHHHHhhhHHHHHHHHhcccccccccccchhhhhhhHHHHHHHHHHHHHhhhhHHHHHhcCCcccc
Confidence 34445666777778888988999998888777776633 233322221111111 144456777889999
Q ss_pred ccccchhhH-------HHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---cccccccc
Q psy3416 189 TTHHINRYL-------TAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ---FNFLTLPE 257 (455)
Q Consensus 189 t~~~~~~~~-------~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~---~~~~~lp~ 257 (455)
|+.+..+.. .+.+.|++ ...+|-+++++-+|..+++.+.+-.++.+|-||++|++.+.|++ ++++.|||
T Consensus 258 TGLNTr~GFaeK~a~~va~ltgLpFvtApNkFEALAahDA~VE~~GalNt~A~SlmKianDIRfLGSGPRcGlgEL~LPE 337 (487)
T KOG1317|consen 258 TGLNTRKGFAEKIAARVAELTGLPFVTAPNKFEALAAHDAMVEVSGALNTIAVSLMKIANDIRFLGSGPRCGLGELMLPE 337 (487)
T ss_pred ccccccccHHHHHHHHHHHHhCCCceecccHHHHHHhhhhHHHhcccHHHHHHHHHHHhhhhhhccCCCCCCccccccCC
Confidence 998887765 56788888 67889999999999999999999999999999999999999998 88899998
Q ss_pred cccccCccCccccChhHHHHHHhhhhhhhhhhHH
Q psy3416 258 SFLTGSSIMPQKKNPDVLELIRGKTGRIYANLIN 291 (455)
Q Consensus 258 ~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~ 291 (455)
...||||||.|+||..||.+...+.++.|+..+
T Consensus 338 -NEPGSSIMPGKVNPTQcEamTmvcaQVMGN~vA 370 (487)
T KOG1317|consen 338 -NEPGSSIMPGKVNPTQCEAMTMVCAQVMGNHVA 370 (487)
T ss_pred -CCCCcccCCCCCCcHHHHHHHHHHHHHhcCceE
Confidence 899999999999999999999999999998654
No 99
>COG3937 Uncharacterized conserved protein [Function unknown]
Probab=52.08 E-value=1.2e+02 Score=25.63 Aligned_cols=81 Identities=19% Similarity=0.314 Sum_probs=48.4
Q ss_pred HHHHHHHHHHcC-CChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhhcCCchHHHHhcChhhhhhhhccCCCCcHHHH
Q psy3416 353 STDVADYLVKKG-VPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIGGTSPEQV 431 (455)
Q Consensus 353 a~~la~~L~~~g-~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v 431 (455)
...|.+.||++| ++-++|...|.++.+++..+...+.+- ....+..+++-.. |.+ -.--+..
T Consensus 26 ~~klvDelVkkGeln~eEak~~vddl~~q~k~~~~e~e~K-----------~~r~i~~ml~~~~-~~r-----~~~~~~l 88 (108)
T COG3937 26 VQKLVDELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEK-----------IPRKIEEMLSDLE-VAR-----QSEMDEL 88 (108)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHhhhHHHh-----------hhHHHHHHHhhcc-ccc-----cchHHHH
Confidence 456889999996 999999999999999887554433221 2223344443221 111 1111334
Q ss_pred HHHHHHHHHHHHHHhchhh
Q psy3416 432 KITVQGFRFYIQKITNKLE 450 (455)
Q Consensus 432 ~~~l~~~~~~~~~~~~~~~ 450 (455)
..-+.+.+.++.++.+++.
T Consensus 89 ~~rvd~Lerqv~~Lenk~k 107 (108)
T COG3937 89 TERVDALERQVADLENKLK 107 (108)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4456677777777776654
No 100
>PF14748 P5CR_dimer: Pyrroline-5-carboxylate reductase dimerisation; PDB: 2RCY_D 3TRI_A 2IZZ_B 2GR9_B 2GRA_B 2GER_C 1YQG_A 2AG8_A 3GT0_A 2AMF_E ....
Probab=30.71 E-value=1.3e+02 Score=25.24 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=22.1
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q psy3416 351 SISTDVADYLVKKGVPFRTSHEIVGSIIK 379 (455)
Q Consensus 351 ~~a~~la~~L~~~g~~~r~Ah~~v~~~~~ 379 (455)
.+.+.+.+..++.|+++++|.+++.+.+.
T Consensus 22 ~~~eal~~a~v~~Gl~~~~A~~lv~~t~~ 50 (107)
T PF14748_consen 22 LFIEALADAAVAQGLPREEARKLVAQTFI 50 (107)
T ss_dssp HHHHHHHHHHHHTT--HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 45677777888889999999999998865
No 101
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=23.00 E-value=4.2e+02 Score=25.94 Aligned_cols=45 Identities=13% Similarity=0.138 Sum_probs=28.9
Q ss_pred hcCCHHHHHHH--h-ccCHh----HHHHHHHHHHHc-CCChhHHHHHHHHHHH
Q psy3416 335 ATFNEQEMYET--A-IKGFS----ISTDVADYLVKK-GVPFRTSHEIVGSIIK 379 (455)
Q Consensus 335 l~v~~~~m~~~--l-~~~~~----~a~~la~~L~~~-g~~~r~Ah~~v~~~~~ 379 (455)
..|+++.|... + ..|.. +.+.+++.-++. |+++++|.+++.+.+.
T Consensus 158 ~~v~E~~~d~~tal~gsgPA~~~~~~~al~~a~~~~ggl~~~~a~~l~~~~~~ 210 (277)
T PRK06928 158 MTIREENMDIASNLTSSSPGFIAAIFEEFAEAAVRNSSLSDEEAFQFLNFALA 210 (277)
T ss_pred EEEchhhCceeeeeecCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 35666555433 1 23333 355566666666 7999999999998875
No 102
>PF12643 MazG-like: MazG-like family
Probab=22.64 E-value=3e+02 Score=22.93 Aligned_cols=55 Identities=20% Similarity=0.181 Sum_probs=37.8
Q ss_pred HHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q psy3416 322 IMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIK 379 (455)
Q Consensus 322 ~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~ 379 (455)
+..+..|....++-.++.+.|.+.+.+-.+++--+++.| |++|++--++|.+-..
T Consensus 17 ~el~elfq~~~~~~~~~~e~i~deLAdvii~~ylLa~rL---Gid~~~lD~~i~~KL~ 71 (98)
T PF12643_consen 17 SELLELFQWLTSGSEVAQEAIKDELADVIIYCYLLADRL---GIDFRELDEIIKEKLK 71 (98)
T ss_pred HHHHHHHhhcccCcchHHHHHHHHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHH
Confidence 456677777777766778888888776666665445444 9998876666665544
No 103
>PF01978 TrmB: Sugar-specific transcriptional regulator TrmB; InterPro: IPR002831 TrmB, is a protein of 38,800 apparent molecular weight, that is involved in the maltose-specific regulation of the trehalose/maltose ABC transport operon in Thermococcus litoralis. TrmB has been shown to be a maltose-specific repressor, and this inhibition is counteracted by maltose and trehalose. TrmB binds maltose and trehalose half-maximally at 20 uM and 0.5 mM sugar concentration, respectively []. Other members of this family are annotated as either transcriptional regulators or hypothetical proteins. ; PDB: 2D1H_A 3QPH_A 1SFX_A.
Probab=22.48 E-value=88 Score=23.54 Aligned_cols=39 Identities=23% Similarity=0.338 Sum_probs=29.1
Q ss_pred CHHHHHHHh-ccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHH
Q psy3416 338 NEQEMYETA-IKGFSISTDVADYLVKKGVPFRTSHEIVGSIIK 379 (455)
Q Consensus 338 ~~~~m~~~l-~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~ 379 (455)
++.+....+ ..|...+.+++..+ |+|+.+++..+.++..
T Consensus 9 ~E~~vy~~Ll~~~~~t~~eIa~~l---~i~~~~v~~~L~~L~~ 48 (68)
T PF01978_consen 9 NEAKVYLALLKNGPATAEEIAEEL---GISRSTVYRALKSLEE 48 (68)
T ss_dssp HHHHHHHHHHHHCHEEHHHHHHHH---TSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHH---CcCHHHHHHHHHHHHH
Confidence 334444443 56777888777777 8999999999999886
No 104
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=21.38 E-value=2.9e+02 Score=26.08 Aligned_cols=31 Identities=16% Similarity=0.132 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHcCCChhHHHHHHHHHHHHH
Q psy3416 351 SISTDVADYLVKKGVPFRTSHEIVGSIIKYC 381 (455)
Q Consensus 351 ~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a 381 (455)
.+.+.+.+.+++.|+++++|.+++.....-+
T Consensus 183 ~~~~a~~~~~~~~Gl~~~~a~~~~~~~~~g~ 213 (245)
T PRK07634 183 YFAESLIEATKSYGVDEETAKHLVIQMISGS 213 (245)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 4566677777777999999999999988744
No 105
>CHL00180 rbcR LysR transcriptional regulator; Provisional
Probab=21.35 E-value=2.6e+02 Score=27.37 Aligned_cols=54 Identities=11% Similarity=0.006 Sum_probs=45.1
Q ss_pred HHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Q psy3416 29 TDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISP 83 (455)
Q Consensus 29 ~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~ 83 (455)
+..-|+.-++...=|| +....||..|..+..++..+....+++.+........+
T Consensus 40 i~~LE~~lg~~Lf~R~-~r~~~lT~~G~~l~~~a~~ll~~~~~~~~~~~~~~~~~ 93 (305)
T CHL00180 40 IKNLEKQLNIPLFDRS-KNKASLTEAGELLLRYGNRILALCEETCRALEDLKNLQ 93 (305)
T ss_pred HHHHHHHhCCEEEEec-CCCceECHhHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 4455667788888898 77899999999999999999999999988887776443
No 106
>TIGR02890 spore_yteA sporulation protein, yteA family. Members of this predicted regulatory protein are found only in endospore-forming members of the Firmicutes group of bacteria, and in nearly every such species; Clostridium perfringens seems to be an exception. The member from Bacillus subtilis, the model system for the study of the sporulation program, has been designated both yteA and yzwB. Some (but not all) members of this family show a strong sequence match to PFAM family pfam01258 the C4-type zinc finger protein, DksA/TraR family, but only one of the four key Cys residues is conserved. All members of this protein family share an additional C-terminal domain. The function of proteins in this family is unknown. YteA was detected in mature spores of Bacillus subtilis by Kuwana, et al., and appears to be expressed under control of sigma-K.
Probab=21.02 E-value=6.3e+02 Score=22.91 Aligned_cols=42 Identities=12% Similarity=0.202 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHH
Q psy3416 59 LAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTA 102 (455)
Q Consensus 59 a~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a 102 (455)
......-.+.+.++..++.|+..+.+|-+...|. +|+..++.
T Consensus 61 ~~l~~~~~~~L~~Ie~AL~Ri~~G~YG~Ce~CGe--~I~~~RL~ 102 (159)
T TIGR02890 61 IALREHEERELREIEHALQKIENGTYGICEVCGK--PIPYERLE 102 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCCCCeecccCC--cccHHHHh
Confidence 3556666777888999999999999988876555 45544543
No 107
>PF03861 ANTAR: ANTAR domain; InterPro: IPR005561 ANTAR (AmiR and NasR transcription antitermination regulators) is an RNA-binding domain found in bacterial transcription antitermination regulatory proteins []. This domain has been detected in various response regulators of two-component systems, which are structured around two proteins, a histidine kinase and a response regulator. This domain is also found in one-component sensory regulators from a variety of bacteria. Most response regulators interact with DNA, however ANTAR-containing regulators interact with RNA. The majority of the domain consists of a coiled-coil.; PDB: 4AKK_A 1SD5_A 1S8N_A 1QO0_E.
Probab=20.62 E-value=1.7e+02 Score=21.30 Aligned_cols=31 Identities=6% Similarity=0.226 Sum_probs=20.0
Q ss_pred HHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhH
Q psy3416 360 LVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSL 393 (455)
Q Consensus 360 L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~ 393 (455)
..+.|++-.+||+.+.+.++ ..+.++.++..
T Consensus 23 m~~~g~~e~~A~~~Lr~~Am---~~~~~l~~vA~ 53 (56)
T PF03861_consen 23 MARYGLSEDEAYRLLRRQAM---RRRRSLADVAE 53 (56)
T ss_dssp HHHHT--HHHHHHHHHHHHH---HCTS-HHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHH---HcCCCHHHHHH
Confidence 33349999999999988776 46777666543
Done!