Query psy3416
Match_columns 455
No_of_seqs 172 out of 1711
Neff 7.2
Searched_HMMs 29240
Date Sat Aug 17 00:28:26 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3416.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3416hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1tj7_A Argininosuccinate lyase 100.0 6.1E-74 2.1E-78 600.5 35.5 345 1-442 112-456 (457)
2 2e9f_A Argininosuccinate lyase 100.0 1.3E-73 4.3E-78 598.9 33.0 346 1-443 113-460 (462)
3 1k7w_A Delta 2 crystallin; eye 100.0 1.6E-73 5.4E-78 599.0 32.6 349 1-447 118-466 (468)
4 4eei_A Adenylosuccinate lyase; 100.0 7.5E-65 2.6E-69 528.5 25.1 327 1-440 97-435 (438)
5 1c3c_A Protein (adenylosuccina 100.0 3.6E-64 1.2E-68 523.5 28.7 326 1-435 96-428 (429)
6 1q5n_A 3-carboxy-CIS,CIS-mucon 100.0 2.8E-64 9.6E-69 527.8 27.7 330 1-441 113-452 (454)
7 2pfm_A Adenylosuccinate lyase; 100.0 1.2E-63 4.2E-68 521.1 31.3 325 1-434 108-439 (444)
8 1re5_A 3-carboxy-CIS,CIS-mucon 100.0 2.6E-63 8.9E-68 519.9 31.5 325 1-438 109-445 (450)
9 3c8t_A Fumarate lyase; structu 100.0 4.9E-63 1.7E-67 517.8 26.8 327 1-438 107-443 (451)
10 1dof_A Adenylosuccinate lyase; 100.0 2.4E-60 8.4E-65 490.6 21.5 289 1-396 99-398 (403)
11 1yis_A Adenylosuccinate lyase; 100.0 4E-58 1.4E-62 483.8 26.9 339 1-450 111-471 (478)
12 3r6q_A Aspartase; aspartate am 100.0 2.4E-57 8.3E-62 474.6 30.0 306 1-419 144-462 (468)
13 2j91_A Adenylosuccinate lyase; 100.0 8.4E-57 2.9E-61 475.4 29.2 340 1-450 137-499 (503)
14 1jsw_A L-aspartase, L-aspartat 100.0 7.1E-57 2.4E-61 473.5 27.1 303 1-418 147-464 (478)
15 1fur_A Fumarase C, FUMC; hydro 100.0 1E-56 3.4E-61 470.9 25.9 303 1-418 143-461 (467)
16 1vdk_A Fumarase C, fumarate hy 100.0 4.1E-57 1.4E-61 474.0 22.7 307 1-420 143-463 (466)
17 4adm_A Fumarase C, fumarate hy 100.0 1.6E-56 5.3E-61 470.2 25.8 308 1-417 164-486 (495)
18 1yfm_A Fumarase, YFUM; lyase, 100.0 3.1E-56 1.1E-60 468.0 23.4 304 1-417 168-485 (488)
19 3ocf_A Fumarate lyase:delta cr 100.0 2.6E-55 9E-60 459.1 25.6 302 1-415 164-477 (478)
20 2qga_B Adenylosuccinate lyase; 100.0 4.3E-55 1.5E-59 459.1 20.3 318 1-436 125-459 (465)
21 3e04_A Fumarase, fumarate hydr 100.0 6.3E-54 2.2E-58 448.1 24.4 300 1-415 170-485 (490)
22 3gtd_A Fumarase C, fumarate hy 100.0 1.1E-53 3.6E-58 446.1 24.9 300 1-415 164-479 (482)
23 2ptr_A Adenylosuccinate lyase; 100.0 5.8E-54 2E-58 450.2 19.1 314 1-434 126-455 (462)
24 4hgv_A Fumarase C, fumarate hy 100.0 2.6E-52 8.8E-57 439.0 25.5 308 1-427 175-495 (495)
25 3bhg_A Adenylosuccinate lyase; 100.0 9.7E-52 3.3E-56 433.0 20.2 313 1-434 129-458 (459)
26 2fel_A 3-carboxy-CIS,CIS-mucon 100.0 2E-50 6.9E-55 410.3 17.6 238 1-345 111-355 (359)
27 1tj7_A Argininosuccinate lyase 99.0 2.4E-10 8.4E-15 119.3 8.2 32 155-186 266-297 (457)
28 2e9f_A Argininosuccinate lyase 99.0 2.6E-10 9E-15 119.2 6.6 32 155-186 269-300 (462)
29 1k7w_A Delta 2 crystallin; eye 99.0 2.7E-10 9.1E-15 119.4 6.2 32 155-186 272-303 (468)
30 1fur_A Fumarase C, FUMC; hydro 98.9 3.8E-09 1.3E-13 110.5 10.4 162 41-253 136-309 (467)
31 1jsw_A L-aspartase, L-aspartat 98.9 6.6E-09 2.3E-13 109.0 11.9 158 41-249 140-305 (478)
32 1vdk_A Fumarase C, fumarate hy 98.9 4.4E-09 1.5E-13 110.0 9.9 161 41-252 136-308 (466)
33 1yfm_A Fumarase, YFUM; lyase, 98.9 5.5E-09 1.9E-13 109.6 9.9 165 38-253 158-334 (488)
34 3r6q_A Aspartase; aspartate am 98.8 1E-08 3.5E-13 107.1 10.4 158 41-249 137-302 (468)
35 1c3c_A Protein (adenylosuccina 98.8 2E-08 6.9E-13 104.1 12.4 186 21-262 69-257 (429)
36 4eei_A Adenylosuccinate lyase; 98.8 1.4E-08 4.9E-13 105.3 11.2 188 19-262 67-258 (438)
37 1re5_A 3-carboxy-CIS,CIS-mucon 98.8 4.8E-08 1.6E-12 101.9 14.5 183 23-262 80-272 (450)
38 1yis_A Adenylosuccinate lyase; 98.8 3.3E-08 1.1E-12 103.8 12.4 188 19-263 82-282 (478)
39 2pfm_A Adenylosuccinate lyase; 98.7 2.9E-08 1E-12 103.2 10.3 186 22-263 80-270 (444)
40 4adm_A Fumarase C, fumarate hy 98.7 4.2E-08 1.4E-12 103.0 10.5 158 41-249 157-324 (495)
41 2j91_A Adenylosuccinate lyase; 98.7 8.5E-08 2.9E-12 101.2 12.7 188 18-262 107-307 (503)
42 3ocf_A Fumarate lyase:delta cr 98.7 3.5E-08 1.2E-12 103.2 9.5 158 41-249 157-322 (478)
43 2ptr_A Adenylosuccinate lyase; 98.7 2.4E-08 8.3E-13 104.4 8.2 29 158-186 287-315 (462)
44 1q5n_A 3-carboxy-CIS,CIS-mucon 98.7 1.7E-07 5.9E-12 97.7 13.6 190 22-262 83-276 (454)
45 3e04_A Fumarase, fumarate hydr 98.6 8.4E-08 2.9E-12 100.3 9.7 157 40-249 162-329 (490)
46 3c8t_A Fumarate lyase; structu 98.6 3.7E-07 1.3E-11 95.1 13.8 183 23-262 82-270 (451)
47 3gtd_A Fumarase C, fumarate hy 98.6 1.1E-07 3.9E-12 99.2 9.6 160 39-249 155-323 (482)
48 2fel_A 3-carboxy-CIS,CIS-mucon 98.4 8.7E-07 3E-11 89.6 10.0 164 35-249 98-262 (359)
49 1dof_A Adenylosuccinate lyase; 98.3 3.8E-06 1.3E-10 86.2 13.4 177 23-251 76-253 (403)
50 4hgv_A Fumarase C, fumarate hy 98.2 4.6E-06 1.6E-10 87.6 10.2 163 37-250 164-335 (495)
51 2qga_B Adenylosuccinate lyase; 98.1 1.1E-05 3.8E-10 84.3 11.1 173 19-248 88-281 (465)
52 3bhg_A Adenylosuccinate lyase; 97.8 4.3E-05 1.5E-09 79.7 9.5 175 20-248 95-284 (459)
No 1
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=6.1e-74 Score=600.54 Aligned_cols=345 Identities=39% Similarity=0.665 Sum_probs=324.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|+++|||||||+|||+||||||++++|++.|.|+++||.+++++++
T Consensus 112 ~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 191 (457)
T 1tj7_A 112 QVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLD 191 (457)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCcCCeechHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
.+|+||++++|++++++++++++.|||+.+..|+++|+++||++++++++++.++++++|||+|+++|+++
T Consensus 192 ~~~lGgaA~aGt~~~~~~~~la~~LGl~~~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~s~--------- 262 (457)
T 1tj7_A 192 VSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTG--------- 262 (457)
T ss_dssp CBCTTCTTTTCCSSCCCHHHHHHHHTCSSBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---------
T ss_pred hcCccccccCCCCCCCCHHHHHHHcCCCCCCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------
Confidence 99999999989999999999999999999999999999999999999999998888777666666555554
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
T Consensus 263 -------------------------------------------------------------------------------- 262 (457)
T 1tj7_A 263 -------------------------------------------------------------------------------- 262 (457)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDN 320 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 320 (455)
|++|+++|+.+.+|||||||||||+.+|.++++++++.|++.+++.+++++|++||||+|++|..++++++.
T Consensus 263 --------e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~RDl~~~~~~l~~s~~~ 334 (457)
T 1tj7_A 263 --------EAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDT 334 (457)
T ss_dssp --------TTCCEECCGGGCBCCTTCTTCCBCHHHHHHHHTHHHHHHHHHHHHHHHTTCCSSCCGGGGGHHHHHHHHHHH
T ss_pred --------CCCceeccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHhhcchhhHHhHHHHHHHH
Confidence 445556666677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhh
Q psy3416 321 IIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFH 400 (455)
Q Consensus 321 ~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~ 400 (455)
+..+++.+..++++|+||+++|++|+.+|++++|+++++|+++|+|||+||+++++++++|.++|+++.|++.++.+.+.
T Consensus 335 ~~~~l~~~~~~l~gl~vn~~~m~~~l~~~~~~at~l~~~Lv~~G~~~r~Ay~~v~~~~~~a~~~g~~l~e~~~~~~~~~~ 414 (457)
T 1tj7_A 335 WLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFS 414 (457)
T ss_dssp HHHHHHHHHHHHTTCEECHHHHHHHHTSTTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTC
T ss_pred HHHHHHHHHHHHccCEECHHHHHHHHhcCCchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998766677
Q ss_pred cCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHH
Q psy3416 401 SYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYI 442 (455)
Q Consensus 401 ~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~ 442 (455)
+.+++++.+++||+++++.|.++||++|++|+++++.+++.+
T Consensus 415 ~~~~~~l~~~ldp~~~v~~r~~~gG~a~~~v~~~i~~~~~~l 456 (457)
T 1tj7_A 415 QVIDEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQARL 456 (457)
T ss_dssp TTCCTTHHHHTSHHHHHHTCCSTTCCSHHHHHHHHHHHHHHH
T ss_pred hhcHHHHHHhCCHHHHHhccCCCCCCCHHHHHHHHHHHHHhc
Confidence 777889999999999999999999999999999999988765
No 2
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=100.00 E-value=1.3e-73 Score=598.89 Aligned_cols=346 Identities=42% Similarity=0.735 Sum_probs=326.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc--ccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKT--IMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKR 78 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~t--vm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r 78 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|+++ |||||||+|||+||||||++++|++.|.|+++||.+++++
T Consensus 113 v~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~ 192 (462)
T 2e9f_A 113 QVATDLRLYLRGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFLAYYEMLKRDAGRLEDAKER 192 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcCccccCcccCccCeeccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred hcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecc
Q psy3416 79 VNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTL 158 (455)
Q Consensus 79 ~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~ 158 (455)
++.+|+||++++||+++++++++++.|||+.+..|+++|+++||++++++++++.++.+++|||+|+++|+++
T Consensus 193 ~~~~~lGgaA~aGt~~~~~~~~~a~~LG~~~~~~n~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~s~------- 265 (462)
T 2e9f_A 193 LNESPLGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVASRDFALEVLSALNIGMLHLSRMAEELILYSTE------- 265 (462)
T ss_dssp HCEECTTCCSSSCCSSCCCHHHHHHHTTCSEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-------
T ss_pred hcccCccccccccCCCCCCHHHHHHHhCCCCCCCCcHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-------
Confidence 9999999999999999999999999999999999999999999999999999998887776666655555554
Q ss_pred cCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy3416 159 PESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRI 238 (455)
Q Consensus 159 ~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~ 238 (455)
T Consensus 266 -------------------------------------------------------------------------------- 265 (462)
T 2e9f_A 266 -------------------------------------------------------------------------------- 265 (462)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHH
Q psy3416 239 SEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTV 318 (455)
Q Consensus 239 ~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~ 318 (455)
|++|+++|+.+.+|||||||||||+.+|.++++++++.|++.+++.+.+++|++||||+|++|..+++++
T Consensus 266 ----------e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~rDl~~~~~~l~~s~ 335 (462)
T 2e9f_A 266 ----------EFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAFVGLSAVVKGLPLAYNKDLQEDKEPLLDAL 335 (462)
T ss_dssp ----------TTCCEECCGGGCEECSSSSSCEECHHHHHHHHTHHHHHHHHHHHHHHHTTCCSSBCGGGGGGHHHHHHHH
T ss_pred ----------CCCcEEecCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHHHHhCCchHhhhchhhhHhHHHHHH
Confidence 4555566666778999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhh
Q psy3416 319 DNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKT 398 (455)
Q Consensus 319 ~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~ 398 (455)
+.+..+++.+..++++|+||+++|++|+.+|++++|+++++|+++|+|||+||+++++++++|.++|+++.|+..++.+.
T Consensus 336 ~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~~~~at~l~~~Lv~~G~~~r~ay~~v~~~~~~a~~~g~~l~e~~~~~~~~ 415 (462)
T 2e9f_A 336 ATYRDSLRLLAALLPGLKWRRERMWRAAEGGYTLATELADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQA 415 (462)
T ss_dssp HHHHHHHHHHHHHGGGCEECHHHHHHHHSCSSTTHHHHHHHHHHHTCCSHHHHHHHHHHHHHHHHTTCCGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcCEECHHHHHHHHhcCccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988778
Q ss_pred hhcCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHHH
Q psy3416 399 FHSYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYIQ 443 (455)
Q Consensus 399 ~~~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~~ 443 (455)
+.+.+++++.+++||+++++.|.++||++|++|+++++++++.++
T Consensus 416 ~~~~l~~~l~~~ldp~~~~~~r~~~gG~a~~~v~~~i~~~~~~l~ 460 (462)
T 2e9f_A 416 HHPLFAEDALPLLRLETAIHRRRSYGGTAPEAVRERLEEAKKEVG 460 (462)
T ss_dssp HCTTCCGGGGGGGSHHHHTTSCCSTTSSCHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHhCCHHHHHhcCcCCCCCCHHHHHHHHHHHHHHhh
Confidence 888888899999999999999999999999999999999988775
No 3
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=100.00 E-value=1.6e-73 Score=599.01 Aligned_cols=349 Identities=40% Similarity=0.665 Sum_probs=328.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|+++|||||||+|||+||||||++++|++.|.|+++||.+++++++
T Consensus 118 v~~Ta~~l~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 197 (468)
T 1k7w_A 118 QVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRIN 197 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccCcCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
.+||||++++||+.+++++++++.|||+.+..|+++|+.+||++++++++++.++.+|+|||+|+++|+++
T Consensus 198 ~~~lGgaA~aGt~~~~~~~~la~~LG~~~~~~n~~~~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~s~--------- 268 (468)
T 1k7w_A 198 VLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTS--------- 268 (468)
T ss_dssp EECTTCTTTTCCTTCCCHHHHHHHHTCSEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTST---------
T ss_pred hcCcccccccCCCCCCChHHHHHHcCCCCCCCChHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC---------
Confidence 99999999999999999999999999999999999999999999999999998887776666655555554
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
T Consensus 269 -------------------------------------------------------------------------------- 268 (468)
T 1k7w_A 269 -------------------------------------------------------------------------------- 268 (468)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDN 320 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 320 (455)
|++|+++|+.+.+|||||||||||+.+|.++++++++.|++.+++.+.+++|++||||+|++|..++++++.
T Consensus 269 --------e~g~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~p~~~~rDl~~~~~~l~~s~~~ 340 (468)
T 1k7w_A 269 --------EFGFLTLSDAFSTGASLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVDT 340 (468)
T ss_dssp --------TTCCEECCGGGCEEETTEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCGGGGGHHHHHHHHHHH
T ss_pred --------CCCceeccCCCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhCCchHhhhhhhhhHhHHHHHHHH
Confidence 455556667677899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhh
Q psy3416 321 IIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFH 400 (455)
Q Consensus 321 ~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~ 400 (455)
+..+++.+..++++|+||+++|++|+.++ +++|+++++|+++|+|||+||++|++++++|.++|+++.|++.++.+.+.
T Consensus 341 ~~~~l~~~~~~l~gl~vn~e~m~~~l~~~-~~at~l~~~Lv~~G~~~r~ay~~v~~~~~~a~~~g~~l~e~~~~~~~~~~ 419 (468)
T 1k7w_A 341 LTAVLQVATGVISTLQISKENMEKALTPE-MLATDLALYLVRKGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSIS 419 (468)
T ss_dssp HHHHHHHHHHHHHHCEECHHHHHHTCCGG-GGHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHTTTCCGGGCCHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCEECHHHHHHHhhCC-ChHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999998877888
Q ss_pred cCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHhc
Q psy3416 401 SYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYIQKITN 447 (455)
Q Consensus 401 ~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~~~~~~ 447 (455)
+.+++++.+++||+.+++.|.++||++|++|+++++.+++.++++..
T Consensus 420 ~~l~~~~~~~ldp~~~~~~r~~~GG~a~~~v~~~i~~~~~~l~~~~~ 466 (468)
T 1k7w_A 420 PQFSSDVSQVFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKKQKE 466 (468)
T ss_dssp TTCCGGGGGGSCHHHHHTTCCSTTSSSHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhHHHHHHhCCHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHhhhh
Confidence 88888999999999999999999999999999999999999987653
No 4
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=100.00 E-value=7.5e-65 Score=528.55 Aligned_cols=327 Identities=19% Similarity=0.175 Sum_probs=278.4
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|+++|||||||+|||+||||||++++|++.|.|+++||.+++++++
T Consensus 97 v~~Ta~~L~lr~~~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 176 (438)
T 4eei_A 97 IIDSALSLQIRDSMSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKDLKDFQKDGL 176 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEETHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCcccccccCccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcch---HHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceec
Q psy3416 81 ISPLGSAALAGTTHHINR---YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLT 157 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~---~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~ 157 (455)
.+||||++ ||+.++++ +++++.|||+.. .++ +|+.+||++++++++++.++++++|||+|+++|+++|++|+.
T Consensus 177 ~~~lgGAv--GT~~~~~~~~~~~~a~~LG~~~~-~~~-~~v~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~~~e~gel~ 252 (438)
T 4eei_A 177 TVQFSGAV--GNYCILTTEDEKKAADILGLPVE-EVS-TQVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFEVY 252 (438)
T ss_dssp CBCCCCTT--SCCSSSCHHHHHHHHHHHTCCBC-SSC-SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCSEE
T ss_pred HhcCccHh--hCcccccHHHHHHHHHHcCCCCC-Ccc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccceec
Confidence 99999864 78888887 789999999854 344 689999999999999999999999999999999999999886
Q ss_pred ccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q psy3416 158 LPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSR 237 (455)
Q Consensus 158 ~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~ 237 (455)
+|..
T Consensus 253 ~~f~---------------------------------------------------------------------------- 256 (438)
T 4eei_A 253 EGFS---------------------------------------------------------------------------- 256 (438)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred cccc----------------------------------------------------------------------------
Confidence 6521
Q ss_pred HHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccc---cchH
Q psy3416 238 ISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQED---KLPL 314 (455)
Q Consensus 238 ~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l 314 (455)
..++|||+|||||||+.+|.++++++++.|+..+ .++++|.+||||++++ |..+
T Consensus 257 --------------------~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~---~~~~~~~~~erdl~~~~~er~~l 313 (438)
T 4eei_A 257 --------------------KGQKGSSTMPHKKNPISTENLTGMARMLRSHVSI---ALENCVLWHERDISHSSAERFYL 313 (438)
T ss_dssp -------------------------------CCCCHHHHHHHHHHHHHHHHHHH---HHHTTCCCTTCCSHHHHHHHHHH
T ss_pred --------------------cCCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH---HHhccchhcCccchhhHHHHHHH
Confidence 1346777777777777788888888888888643 5678999999999887 7889
Q ss_pred hHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhh
Q psy3416 315 FDTVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLS 392 (455)
Q Consensus 315 ~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~ 392 (455)
++++..++.++..+..++++|+||+++|++|+. .|+++||+++++|+++|+|||+||++|++++++|.+ |+++.|++
T Consensus 314 ~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~~~~~~~a~~~a~~Lv~~g~~~~~Ah~~v~~~~~~a~~-g~~l~e~~ 392 (438)
T 4eei_A 314 PDNFGIMVYALRRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDCYKIVQQVAFDLKQ-GESFSKKL 392 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHCCTTHHHHHHHHHHHHSSCCHHHHHHHHHHC--------CCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-CCCHHHHH
Confidence 999999999999999999999999999999985 688999999999999999999999999999999999 99999999
Q ss_pred HHHHhhhhcCC----chHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHH
Q psy3416 393 LAELKTFHSYI----SDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRF 440 (455)
Q Consensus 393 ~~~~~~~~~~~----~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~ 440 (455)
.++.+.+.+.+ ++++..++| .|||++|+.|+++++.-.+
T Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~d---------~~gG~a~~~v~~~l~~~~~ 435 (438)
T 4eei_A 393 QKVMHDEHNIILDIPEMDFEGIKK---------TYLKEIDHVFDRSVKARGE 435 (438)
T ss_dssp HHHHHHTTCCCCCCCCCSHHHHHH---------HHTTTHHHHHHHHCSCC--
T ss_pred HHHHhhhhccccCCCHHHHHHHHH---------hcCCchHHHHHHHHHHhhc
Confidence 98877776654 457888887 3999999999998875443
No 5
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=100.00 E-value=3.6e-64 Score=523.55 Aligned_cols=326 Identities=19% Similarity=0.206 Sum_probs=289.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|+++|||||||+|||+||||||++++|++.|.|+++||.+++++++
T Consensus 96 ~~~Ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 175 (429)
T 1c3c_A 96 VLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVS 175 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecCcCCCcCcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCc-chHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeccc
Q psy3416 81 ISPLGSAALAGTTHHI-NRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP 159 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~-~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~ 159 (455)
.+|||||+++|.+++. +++++++.|||+.+..| ||+.+||+++++.++++.++.+++|||+|+++|+++|++|+.+|
T Consensus 176 ~~~lGgAvGt~~~~~~~~~~~~a~~LGl~~~~~~--d~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~~~e~~El~~p 253 (429)
T 1c3c_A 176 YGKISGAVGNYANVPPEVEEKALSYLGLKPEPVS--TQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEP 253 (429)
T ss_dssp EECCCCTTSSCSSSCHHHHHHHHHHTTCEECSSC--SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECC
T ss_pred cCCCchhhcCCccCCHHHHHHHHHHcCCCCCCCC--cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhccc
Confidence 9999998755544432 34899999999988766 68889999999999999999999999999999999999988766
Q ss_pred CCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy3416 160 ESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRIS 239 (455)
Q Consensus 160 e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~ 239 (455)
..
T Consensus 254 ~~------------------------------------------------------------------------------ 255 (429)
T 1c3c_A 254 FR------------------------------------------------------------------------------ 255 (429)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 42
Q ss_pred HHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccc---cchHhH
Q psy3416 240 EEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQED---KLPLFD 316 (455)
Q Consensus 240 ~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~l~~ 316 (455)
..++|||||||||||+.+|.++++++++.|++.+++. ++|.+||+|+++. |..+++
T Consensus 256 ------------------~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~---~~~~~~erd~~~~~~~~~~l~~ 314 (429)
T 1c3c_A 256 ------------------KGQRGSSAMPHKKNPITCERLTGLSRMMRAYVDPSLE---NIALWHERDISHSSVERYVFPD 314 (429)
T ss_dssp ------------------C-----CCCTTCCCCHHHHHHHHHHHHHHHTHHHHHH---TTCCSTTCCSHHHHHHHHHHHH
T ss_pred ------------------cCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHh---cCCccccccccccHHHHHHHHH
Confidence 0346777777777777888888888999999887654 5689999999884 778899
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHH
Q psy3416 317 TVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLA 394 (455)
Q Consensus 317 ~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~ 394 (455)
+++.+..++..+..++++|+||+++|++|+. .|+++||+++++|+++|+||++||++|++++++|.++|+++.|++.+
T Consensus 315 ~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~a~~la~~L~~~gig~~~A~~iv~~~~~~a~~~g~~l~e~~~~ 394 (429)
T 1c3c_A 315 ATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLE 394 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHCcCeeCHHHHHHHHHhccChHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHhC
Confidence 9999999999999999999999999999985 88899999999999999999999999999999999999999999887
Q ss_pred HHhhhhcCCch-HHHHhcChhhhhhhhccCCCCcHHHHHHHH
Q psy3416 395 ELKTFHSYISD-DIIDILCIENSIKFKNHIGGTSPEQVKITV 435 (455)
Q Consensus 395 ~~~~~~~~~~~-~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l 435 (455)
+ +.+...+++ ++.+++||++ |.|.+++++++++
T Consensus 395 ~-~~~~~~l~~~~l~~~ldp~~-------~~~~a~~~~~~~~ 428 (429)
T 1c3c_A 395 D-EEVKKLVTKEELEELFDISY-------YLKHVDHIFERFE 428 (429)
T ss_dssp C-HHHHTTCCHHHHHHTTCTHH-------HHTTHHHHHHTTC
T ss_pred C-hhhhccCCHHHHHHhCCHHH-------HhhhHHHHHHHHh
Confidence 6 567677765 8999999985 7889999988754
No 6
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=100.00 E-value=2.8e-64 Score=527.82 Aligned_cols=330 Identities=21% Similarity=0.254 Sum_probs=289.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|+++|||||||+|||+||||||+|++|++.|.|+++||.+++++++
T Consensus 113 ~~~Ta~~L~~r~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 192 (454)
T 1q5n_A 113 ILDTACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVL 192 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCceeeccccCCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCc----CcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee
Q psy3416 81 ISPLGSAALAGTTH----HINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 156 (455)
Q Consensus 81 ~~~lGga~~~G~~~----~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el 156 (455)
.+|||||+++|.++ +.+++++++.|||+.+..| |+.+||+++++.++++.++.+++|||+|+++|+++||+|+
T Consensus 193 ~~~lGgAvGT~~~~~~~~~~~~~~~a~~LG~~~~~~~---~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl 269 (454)
T 1q5n_A 193 VAQLGGAVGSLASLQDQGSIVVEAYAKQLKLGQTACT---WHGERDRIVEIASVLGIITGNVGKMARDWSLMMQTEIAEV 269 (454)
T ss_dssp BCCCCCTTSSCGGGTTCHHHHHHHHHHHHTCBCCSSC---CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCE
T ss_pred ccCCchHhhcCcccccccHHHHHHHHHHhCcCCCCCC---CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchh
Confidence 99999988655554 6788999999999987764 6779999999999999999999999999999999999988
Q ss_pred cccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q psy3416 157 TLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLS 236 (455)
Q Consensus 157 ~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~ 236 (455)
.+|..
T Consensus 270 ~~p~~--------------------------------------------------------------------------- 274 (454)
T 1q5n_A 270 FEPTA--------------------------------------------------------------------------- 274 (454)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 66642
Q ss_pred HHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccc---cch
Q psy3416 237 RISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQED---KLP 313 (455)
Q Consensus 237 ~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~ 313 (455)
..++|||||||||||+.+|.+++++++++|++.+++. ++|.+||||+++. |..
T Consensus 275 ---------------------~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~---~~~~~~erd~~~~~~~~~~ 330 (454)
T 1q5n_A 275 ---------------------KGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQ---SMVQEHERSLGAWHAEWLS 330 (454)
T ss_dssp ---------------------------------CCCHHHHHHHHHHHHHHHHHHHHHH---TTCCCTTSCSSHHHHHHHH
T ss_pred ---------------------cCCCCCccCCCCCCCHHHHHHHHHHHHHHHHHHHHHH---hccchhcccccchHHHHHH
Confidence 0246777778888888888888899999999888663 6789999999874 678
Q ss_pred HhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhh
Q psy3416 314 LFDTVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDL 391 (455)
Q Consensus 314 l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~ 391 (455)
+|++++.+..++..+..++++|+||+++|++|+. .++++||+++++|+++ +|||+||++|+++++.|.++|+++.++
T Consensus 331 l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~l~~~L~~~-ig~~~A~~iv~~~~~~a~~~g~~l~e~ 409 (454)
T 1q5n_A 331 LPEIFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALAPH-MGRLNAHHVVEAACKTAVAEQKHLKDI 409 (454)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHTTTTGGGHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhCcChhHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 8999999999999999999999999999999984 8999999999999999 999999999999999999999999999
Q ss_pred hHHHHhhhhcCCc-hHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHH
Q psy3416 392 SLAELKTFHSYIS-DDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFY 441 (455)
Q Consensus 392 ~~~~~~~~~~~~~-~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~ 441 (455)
+.++ +.+...++ +++.+++||++ |.|++++.|+++++.+|+.
T Consensus 410 ~~~~-~~~~~~l~~~~l~~~ldp~~-------~~g~a~~~v~~~~~~~~~~ 452 (454)
T 1q5n_A 410 ISQV-DEVKQYFNPSQLDEIFKPES-------YLGNIQDQIDAVLQEAKGE 452 (454)
T ss_dssp HTTC-HHHHTTCCHHHHHHHTCGGG-------GCTTHHHHHHHHHHCC---
T ss_pred Hhcc-hhhhcCCCHHHHHHhCCHHH-------HcCcHHHHHHHHHHHHhhh
Confidence 8876 56777776 48999999984 8899999999999876653
No 7
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=100.00 E-value=1.2e-63 Score=521.13 Aligned_cols=325 Identities=21% Similarity=0.225 Sum_probs=292.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|+++|||||||+|||+||||||+|++|++.|.|+++||.+++++++
T Consensus 108 v~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 187 (444)
T 2pfm_A 108 VVDTALSYILKQANEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVERFKQAANTVR 187 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCc-chHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeccc
Q psy3416 81 ISPLGSAALAGTTHHI-NRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP 159 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~-~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~ 159 (455)
.+|||||+++|.+++. +++++++.|||+.+..| ||+.+||+++++.++++.++.+++|||+|+++|+++||+|+.+|
T Consensus 188 ~~~lGgAvGt~~~~~~~~~~~~a~~LGl~~~~~~--d~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl~~p 265 (444)
T 2pfm_A 188 VGKLSGAVGTYANIDPFVEKYVCENLGLEAAPIS--TQTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETREVEEA 265 (444)
T ss_dssp EECCCCTTSSCTTSCHHHHHHHHHHTTCEECSSC--SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECC
T ss_pred ccCCchhhccCCcCCHHHHHHHHHHhCCCCCCCC--cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 9999998755544432 34899999999988766 68889999999999999999999999999999999999988766
Q ss_pred CCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy3416 160 ESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRIS 239 (455)
Q Consensus 160 e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~ 239 (455)
..
T Consensus 266 ~~------------------------------------------------------------------------------ 267 (444)
T 2pfm_A 266 FA------------------------------------------------------------------------------ 267 (444)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cc------------------------------------------------------------------------------
Confidence 42
Q ss_pred HHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc---ccchHhH
Q psy3416 240 EEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE---DKLPLFD 316 (455)
Q Consensus 240 ~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~l~~ 316 (455)
..++|||||||||||+.+|.++++++++.|++.+++. ++|.+||+|+++ +|..+++
T Consensus 268 ------------------~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~---~~~~~~erd~~~~~~~~~~l~~ 326 (444)
T 2pfm_A 268 ------------------KGQKGSSAMPHKRNPIGSENMTGLARVIRGYMMTAYE---NVPLWHERDISHSSAERVILPD 326 (444)
T ss_dssp ------------------TTCCSCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHH---TSCCCTTCCSHHHHHHHHHHHH
T ss_pred ------------------cCCCcCccCCcccCCHHHHHHHHHHHHHHHHHHHHHH---hCcccccccccchHHHHHHHHH
Confidence 0246777777777777788888888999999887654 568999999988 4788999
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHH
Q psy3416 317 TVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLA 394 (455)
Q Consensus 317 ~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~ 394 (455)
++..+..++..+..++++|+||+++|++|+. .|+++||+++++|+++|+||++||++|++++++|.++|+++.|++.+
T Consensus 327 ~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~la~~L~~~gig~~~A~~iv~~~~~~a~~~g~~l~e~~~~ 406 (444)
T 2pfm_A 327 ATIALNYMLNRFGNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKGMVREEAYDIVQPKAMEAWETQVQFKELVEA 406 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHccCEECHHHHHHHHHhCcCchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHCCCHHHHHhc
Confidence 9999999999999999999999999999985 88899999999999999999999999999999999999999999887
Q ss_pred HHhhhhcCCc-hHHHHhcChhhhhhhhccCCCCcHHHHHHH
Q psy3416 395 ELKTFHSYIS-DDIIDILCIENSIKFKNHIGGTSPEQVKIT 434 (455)
Q Consensus 395 ~~~~~~~~~~-~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~ 434 (455)
+ +.+.+.++ +++.+++||+ .|.|.++++++++
T Consensus 407 ~-~~~~~~l~~~~l~~~ldp~-------~~~~~a~~~~~~~ 439 (444)
T 2pfm_A 407 D-ERITSKLTQEEINECFNYE-------HHMQHVDTIFERL 439 (444)
T ss_dssp C-HHHHTTSCHHHHHHHTCGG-------GGGTTHHHHHHHH
T ss_pred c-hhhhccCCHHHHHHhCCHH-------HHHhHHHHHHHHH
Confidence 6 56767776 5899999998 4889999999875
No 8
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=100.00 E-value=2.6e-63 Score=519.94 Aligned_cols=325 Identities=21% Similarity=0.247 Sum_probs=288.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|+++|||||||+|||+||||||+|++|++.|.|+++||.+++++++
T Consensus 109 ~~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 188 (450)
T 1re5_A 109 AMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLL 188 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCccCccCcHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcch------HHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcc
Q psy3416 81 ISPLGSAALAGTTHHINR------YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFN 154 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~------~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~ 154 (455)
.+|||||+ ||+.++++ +++++.|||+.+.. +|+++||++++++++++.++.+++|||+|+++|+++|++
T Consensus 189 ~~~lGGAv--Gt~~~~~~~~~~~~~~la~~LG~~~~~~---~~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~~ 263 (450)
T 1re5_A 189 VLQFGGAS--GSLAALGSKAMPVAEALAEQLKLTLPEQ---PWHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAG 263 (450)
T ss_dssp BCCCCCTT--SSCGGGGGGHHHHHHHHHHHHTCBCCSS---CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTC
T ss_pred hcCCcchh--cCCcccCcchHHHHHHHHHHhCcCCCCc---ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc
Confidence 99999864 67777777 89999999998765 489999999999999999999999999999999999999
Q ss_pred eecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHH
Q psy3416 155 FLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMH 234 (455)
Q Consensus 155 el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~ 234 (455)
|+.+|..
T Consensus 264 El~~p~~------------------------------------------------------------------------- 270 (450)
T 1re5_A 264 EVFEPSA------------------------------------------------------------------------- 270 (450)
T ss_dssp CEECCCC-------------------------------------------------------------------------
T ss_pred eeecccc-------------------------------------------------------------------------
Confidence 8866642
Q ss_pred HHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc---cc
Q psy3416 235 LSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE---DK 311 (455)
Q Consensus 235 l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~ 311 (455)
..++|||||||||||+.+|.++++++++.|++.+++ +++|.+||+|+++ +|
T Consensus 271 -----------------------~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~---~~~~~~~erd~~~~~~~~ 324 (450)
T 1re5_A 271 -----------------------PGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLF---AAMPQEHERSLGLWHAEW 324 (450)
T ss_dssp -----------------------C----------CCCCHHHHHHHHHHHHHHHHHHHHH---HTCCCCTTBCSSTTTTHH
T ss_pred -----------------------cCCCccccCCCCcCCHHHHHHHHHHHHHHHHHHHHH---HhChhhccccccchHHHH
Confidence 024677777777888888888888999999988776 4678999999987 68
Q ss_pred chHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCch
Q psy3416 312 LPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFK 389 (455)
Q Consensus 312 ~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~ 389 (455)
..+++++..+..++..+..++++|+||+++|++|+. .|+++||+++++|++ |+|||+||++|++++++|.++|+++.
T Consensus 325 ~~l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~~~Ae~l~~~L~~-gig~~~A~~~v~~~~~~a~~~g~~l~ 403 (450)
T 1re5_A 325 ETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQ-RLGRDRAHHLLEQCCQRAVAEQRHLR 403 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTSTTGGGHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhCcChhHHHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhCCCHH
Confidence 899999999999999999999999999999999985 899999999999999 99999999999999999999999999
Q ss_pred hhhHHHHhhhhcCCch-HHHHhcChhhhhhhhccCCCCcHHHHHHHHHHH
Q psy3416 390 DLSLAELKTFHSYISD-DIIDILCIENSIKFKNHIGGTSPEQVKITVQGF 438 (455)
Q Consensus 390 e~~~~~~~~~~~~~~~-~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~ 438 (455)
+++.++ +.+...+++ ++.+++||+ .+.|+++++++++++++
T Consensus 404 e~~~~~-~~~~~~l~~~~l~~~ldp~-------~~~~~a~~~~~~~~~~~ 445 (450)
T 1re5_A 404 AVLGDE-PQVSAELSGEELDRLLDPA-------HYLGQARVWVARAVSEH 445 (450)
T ss_dssp HHHHTC-HHHHHHSCHHHHHHHTCGG-------GCCTTHHHHHHHHHHHH
T ss_pred HHHHhC-hhhccCCCHHHHHHhcCHH-------HHhhhHHHHHHHHHhhc
Confidence 998876 556666654 899999998 49999999999988754
No 9
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=100.00 E-value=4.9e-63 Score=517.76 Aligned_cols=327 Identities=20% Similarity=0.188 Sum_probs=284.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|+++|||||||+|||+||||||+|++|++.|.|+++||.+++++++
T Consensus 107 v~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 186 (451)
T 3c8t_A 107 IMDTATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTHLQHALPVTFGYKAAVWLSAFDRHAARLEEISPRVL 186 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCceeecccCCCCceeehHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCc----CcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee
Q psy3416 81 ISPLGSAALAGTTH----HINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 156 (455)
Q Consensus 81 ~~~lGga~~~G~~~----~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el 156 (455)
.+|||||+++|.++ +.+++++++.|||+.+..| |+.+||+++++.++++.++.+|+|||+|+++|+++||+|+
T Consensus 187 ~~~lGgAvGT~~~~~~~~~~~~~~~a~~LGl~~~~~~---~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~gEl 263 (451)
T 3c8t_A 187 VVEFSGASGTLASLGTRGLDVQRELARELNLGVPSIT---WHSARDAVAETVQFLALVSGSLGKLAMDISIMMTTELGEV 263 (451)
T ss_dssp BCCCCCTTSSCGGGTTCHHHHHHHHHHHHTCBCCSSC---CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCE
T ss_pred ccCCchhhhcCcccccccHHHHHHHHHHhCCCCCCCC---CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 99999987444443 3378999999999987764 6779999999999999999999999999999999999988
Q ss_pred cccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q psy3416 157 TLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLS 236 (455)
Q Consensus 157 ~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~ 236 (455)
.+|..
T Consensus 264 ~~p~~--------------------------------------------------------------------------- 268 (451)
T 3c8t_A 264 AEPFV--------------------------------------------------------------------------- 268 (451)
T ss_dssp ECC-----------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 66642
Q ss_pred HHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccc---cch
Q psy3416 237 RISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQED---KLP 313 (455)
Q Consensus 237 ~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~~ 313 (455)
..++|||||||||||+.+|.+++++++++|++.+++. ++|.+||||+++. |..
T Consensus 269 ---------------------~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~---~~~~~~erd~~~~~~~~~~ 324 (451)
T 3c8t_A 269 ---------------------RHRGASSTMPQKQNPVSCELILAGARIVRNHATSMLD---AMIHDFERATGPWHLEWSA 324 (451)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHHHHHHHH---HTCCCTTCCHHHHHHHHHH
T ss_pred ---------------------cCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHHHHh---cCchhhcccccchHHHHHH
Confidence 0346777888888888888888899999999888764 5789999999874 678
Q ss_pred HhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhh
Q psy3416 314 LFDTVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDL 391 (455)
Q Consensus 314 l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~ 391 (455)
++++++.+..++..+..++++|+||+++|++|+. .|+++||+++++|+++ +||++||++|+++++.|.++|+++.++
T Consensus 325 l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~ae~l~~~L~~~-ig~~~A~~iv~~~~~~a~~~g~~l~e~ 403 (451)
T 3c8t_A 325 VPEGFAVASGILYQAEFMLGGLQVFPDRMRENLDHSRGLIVAEAVMMALAPH-TGRKEAHDIVYLGCRRAVEDKTGLFEV 403 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHTTTTTGGGHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHTTSCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCcCEECHHHHHHHHHhccChHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 8999999999999999999999999999999985 8999999999999999 999999999999999999999999999
Q ss_pred hHHHHhhhhcCCc-hHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHH
Q psy3416 392 SLAELKTFHSYIS-DDIIDILCIENSIKFKNHIGGTSPEQVKITVQGF 438 (455)
Q Consensus 392 ~~~~~~~~~~~~~-~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~ 438 (455)
+.++ +.+...++ +++.+++||+ .|.|+++++++++++..
T Consensus 404 ~~~~-~~~~~~l~~~~l~~~ldp~-------~~~~~~~~~~~~~~~~~ 443 (451)
T 3c8t_A 404 LRTM-PEVAKPLGEEALRDLTDPR-------NYLGSAGAMVDNVLGGR 443 (451)
T ss_dssp HTTC-HHHHHHHCHHHHHHHTCGG-------GCCTTHHHHHHHHHSCC
T ss_pred HhcC-hhhhccCCHHHHHHhCCHH-------HHhchHHHHHHHHHHhc
Confidence 8876 55666565 5899999998 49999999999987643
No 10
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=100.00 E-value=2.4e-60 Score=490.59 Aligned_cols=289 Identities=18% Similarity=0.165 Sum_probs=253.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|+++|||||||+|||+||||||+|++|++.|.|+ +||.+++++++
T Consensus 99 ~~~Ta~~l~~r~~l~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~-~rL~~~~~~~~ 177 (403)
T 1dof_A 99 IIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIA-CRQLALAEEFI 177 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHH-HHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccCcccccCcHHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred ccCCCccccCCCCc----CcchHHHHHhcCCCCCCCCchhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcce
Q psy3416 81 ISPLGSAALAGTTH----HINRYLTAKLLDFEKPSENSLDSIS-DRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNF 155 (455)
Q Consensus 81 ~~~lGga~~~G~~~----~~~~~~~a~~LG~~~~~~n~~~~~~-~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~e 155 (455)
.+|||||+++|.++ +.+++++++.|||+.+.. +|+. +||+++++.++++.++.+++|||+|+++|+++|++|
T Consensus 178 ~~~lGgAvGt~~~~~~~~~~~~~~~a~~lGl~~~~~---~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~~~e~~e 254 (403)
T 1dof_A 178 RAKIGGAVGTMASWGELGLEVRRRVAERLGLPHHVI---TTQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIGE 254 (403)
T ss_dssp CBCCCCTTSSCGGGGGGHHHHHHHHHHHTTCCBCSS---CSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCS
T ss_pred ccCccHHHhhCcccccccHHHHHHHHHHhCcCCCCC---cchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccCe
Confidence 99999988656555 668899999999998764 5788 999999999999999999998888888888888777
Q ss_pred ecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHH
Q psy3416 156 LTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHL 235 (455)
Q Consensus 156 l~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l 235 (455)
+++
T Consensus 255 i~l----------------------------------------------------------------------------- 257 (403)
T 1dof_A 255 VVE----------------------------------------------------------------------------- 257 (403)
T ss_dssp EES-----------------------------------------------------------------------------
T ss_pred EeC-----------------------------------------------------------------------------
Confidence 644
Q ss_pred HHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccc---cc
Q psy3416 236 SRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQED---KL 312 (455)
Q Consensus 236 ~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~---~~ 312 (455)
| . +||||||||+||+.+|.++++++++.|++.+++. ++|.+||||+++. |.
T Consensus 258 --------------------p--~-~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~---~~~~~~erd~~~~~~~~~ 311 (403)
T 1dof_A 258 --------------------G--G-GGSSAMPHKANPTASERIVSLARYVRALTHVAFE---NVALWHERDLTNSANERV 311 (403)
T ss_dssp --------------------C--C----------CCCHHHHHHHHHHHHHHHHHHHHHH---TTCCCTTCCGGGHHHHHH
T ss_pred --------------------C--C-CccCCCCCCCCchHHHHHHHHHHHHHHHHHHHHH---cCcccccccccchHHHHH
Confidence 4 2 5566666666666777777888888888877644 6789999999884 68
Q ss_pred hHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCC-Cch
Q psy3416 313 PLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHK-TFK 389 (455)
Q Consensus 313 ~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~-~~~ 389 (455)
.++++++.+..++..+..++++|+||+++|++|+. .++++||+++++|+++|+|||+||++|++++++|.++|+ ++.
T Consensus 312 ~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~s~~~~~a~~l~~~L~~~gig~~~A~~iv~~~~~~a~~~g~~~l~ 391 (403)
T 1dof_A 312 WIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVE 391 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHHHTTCCCCCCGGGGCCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHhccCHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHhCCcCHH
Confidence 89999999999999999999999999999999985 788999999999999999999999999999999999998 999
Q ss_pred hhhHHHH
Q psy3416 390 DLSLAEL 396 (455)
Q Consensus 390 e~~~~~~ 396 (455)
|++.+++
T Consensus 392 e~~~~~~ 398 (403)
T 1dof_A 392 RLIEDAL 398 (403)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 9888753
No 11
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=100.00 E-value=4e-58 Score=483.81 Aligned_cols=339 Identities=17% Similarity=0.190 Sum_probs=253.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
+++|+..|++|+++..+.+.|..|+++|.++|++|+++|||||||+|||+||||||++++|++.|.|+++||.++++++.
T Consensus 111 i~~ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~rL~~~~~~l~ 190 (478)
T 1yis_A 111 VQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVLWAQELLMAFQSLSEFRDKMR 190 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeeecccCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccCCCccccCCCC------cCcch-------HHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 81 ISPLGSAALAGTT------HHINR-------YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFII 147 (455)
Q Consensus 81 ~~~lGga~~~G~~------~~~~~-------~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~ 147 (455)
.+++||++ ||+ +|+|+ +++++.|||+.+..|+. |+++||+++|+.++++.++++|+|||+|+++
T Consensus 191 ~lg~gg~~--GT~a~~~~~f~~d~~~~~~v~~~~a~~LG~~~~~~~s~-~~~~rd~~~e~~~~l~~~a~~L~kia~Di~l 267 (478)
T 1yis_A 191 FRGIKGAT--GTQDSFLTLFAGDESKVEALDELVTKKANFSNRFLITG-QTYSRQQDSQLVFSLSLLGAAAKKVCTDIRV 267 (478)
T ss_dssp BCCSCTTT--SSCHHHHHHTTTCHHHHHHHHHHHHHHTTCSCBCSSCS-SSCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhcccchh--ccchhhhcccCcchhhHHHHHHHHHHHhCcCCCCCccc-cccCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888875 777 67776 78999999997766764 8999999999999999999999999998888
Q ss_pred hhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHH
Q psy3416 148 FMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFIST 227 (455)
Q Consensus 148 l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~ 227 (455)
|++ ++|+++|..
T Consensus 268 l~s--~~el~~p~~------------------------------------------------------------------ 279 (478)
T 1yis_A 268 LQA--FGELLEPFE------------------------------------------------------------------ 279 (478)
T ss_dssp HHH--TTSEECC--------------------------------------------------------------------
T ss_pred Hhh--hhheecccc------------------------------------------------------------------
Confidence 887 777655531
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccc
Q psy3416 228 CCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL 307 (455)
Q Consensus 228 ~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 307 (455)
..++|||||||||||+.+|.+++++++++|++.+++...+++++.+|.+.
T Consensus 280 ------------------------------~~q~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~er~~~~ 329 (478)
T 1yis_A 280 ------------------------------KDQIGSSAMPYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDD 329 (478)
T ss_dssp -----------------------------------------CCCCHHHHHHHHHHHHHHTSHHHHHHHHHTCCTTCCGGG
T ss_pred ------------------------------CCCCccccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHhccCCcccCcch
Confidence 12577888888888888888899999999999988888887765555554
Q ss_pred cc-ccchHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhcc--CHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHH--
Q psy3416 308 QE-DKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIK--GFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCN-- 382 (455)
Q Consensus 308 ~~-~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~--~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~-- 382 (455)
+. .+..+++++..++.++..+..++++|+||+++|++|+.. |++.++.++++|+++|+|||+||++|++++.++.
T Consensus 330 ~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~erm~~~l~~~~~~~~te~v~~~l~~~G~~~~~Ah~~v~~~a~~~~~~ 409 (478)
T 1yis_A 330 SAGRRMLIPDVLLTAEALLTTLQNIFEGLSVQTDNVKKIVEDEIAFLGLEKAMMMLTEEGVDRQQAHAVIRKTALEAKQL 409 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHHHHHHHHHC------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhCCChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 33 345788999999999999999999999999999999965 5666677899999999999999999999987664
Q ss_pred --HcCCCchhhhHHHHhhhhcCCchHHHHhc-ChhhhhhhhccCCCCcHHHHHHHH-HHHHHHHHHHhchhh
Q psy3416 383 --EKHKTFKDLSLAELKTFHSYISDDIIDIL-CIENSIKFKNHIGGTSPEQVKITV-QGFRFYIQKITNKLE 450 (455)
Q Consensus 383 --~~g~~~~e~~~~~~~~~~~~~~~~l~~~l-dp~~~v~~~~~~~G~a~~~v~~~l-~~~~~~~~~~~~~~~ 450 (455)
++|+++.++..+ +.+. ...+++.+++ ||+ .|+|+++++|++++ ..+++.++++...++
T Consensus 410 v~~~g~~~~~l~~~--~~~~-l~~~el~~~l~dp~-------~~~g~a~~~v~~~~~~~~~~~l~~~~~~~~ 471 (478)
T 1yis_A 410 QATQKVDIRQTMAD--PFFD-SVRDRVVGLVNNPI-------NFTGRCVSQTESFIAKELKPTIDKYLDKSA 471 (478)
T ss_dssp ---------CCCTT--TTST-TTHHHHHHHHHCGG-------GGSTTHHHHHHHHHHHTHHHHHGGGCC---
T ss_pred HHHcCCCHHHHhcC--CCCC-CCHHHHHHHHhCHH-------HHcCcHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 577775554321 1111 1245899999 998 58999999999999 578998888766544
No 12
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=100.00 E-value=2.4e-57 Score=474.61 Aligned_cols=306 Identities=21% Similarity=0.271 Sum_probs=266.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|++++||||||+|||+||||||+|++|++.|.|+++||.+++++++
T Consensus 144 v~~Ta~~L~~r~~l~~l~~~L~~L~~~L~~~A~~~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l~ 223 (468)
T 3r6q_A 144 AFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLY 223 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEEecCcCCccceeccHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHH-------HHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q psy3416 81 ISPLGSAALAGTTHHINRYL-------TAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN-- 150 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~-------~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~-- 150 (455)
.+||||+++ ||++++++++ +++.|||+. +..|+++|+++||+++++.++|+.++.+|+|||+|+++|++
T Consensus 224 ~~~lGgtAv-GT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~Kia~DlrllsS~p 302 (468)
T 3r6q_A 224 DINMGATAV-GTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGP 302 (468)
T ss_dssp EECTTCTTT-SSCTTCCHHHHHHHHHHHHHHHCSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBS
T ss_pred hcCCCCeec-CCCCCCChHHHHHHHHHHHHHhCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999776 8998888754 699999996 56799999999999999999999999999988888888873
Q ss_pred -CCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q psy3416 151 -PQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229 (455)
Q Consensus 151 -~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~ 229 (455)
+|++|+++
T Consensus 303 r~g~gei~l----------------------------------------------------------------------- 311 (468)
T 3r6q_A 303 RAGLSEIVL----------------------------------------------------------------------- 311 (468)
T ss_dssp SSSCCCEEC-----------------------------------------------------------------------
T ss_pred CCCeeEEEC-----------------------------------------------------------------------
Confidence 45666544
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc
Q psy3416 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE 309 (455)
Q Consensus 230 ~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 309 (455)
|+ .++|||||||||||+++|.+++++++++|++.+++.+....++..|--...
T Consensus 312 --------------------------p~-~~~GSSiMP~K~NP~~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p~ 364 (468)
T 3r6q_A 312 --------------------------PA-RQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPV 364 (468)
T ss_dssp --------------------------CC-CSCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHH
T ss_pred --------------------------CC-CCCCCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcCchhhhhhHHH
Confidence 43 367788888888888888888889999999888877765544433321222
Q ss_pred ccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCc
Q psy3416 310 DKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTF 388 (455)
Q Consensus 310 ~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~ 388 (455)
.+..++++++.+..+++.+. .++++|+||+++|++|+..++.++++|++++ +|+.+++++++|.++|+++
T Consensus 365 i~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~~~l~~s~~l~t~La~~l---------gy~~a~~ia~~a~~~g~~l 435 (468)
T 3r6q_A 365 LFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHV---------GYETAAKLAREAYLTGESI 435 (468)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHTCSTTHHHHHHHH---------HHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCCchHHhcchhh---------HHHHHHHHHHHHHHhCCCH
Confidence 34568999999999999999 9999999999999999999998999999888 7888899999999999999
Q ss_pred hhhhHHHHhhhhcCC-chHHHHhcChhhhhhh
Q psy3416 389 KDLSLAELKTFHSYI-SDDIIDILCIENSIKF 419 (455)
Q Consensus 389 ~e~~~~~~~~~~~~~-~~~l~~~ldp~~~v~~ 419 (455)
.|++.++ ..+ ++++.+++||++++.+
T Consensus 436 ~e~~~~~-----~~ls~eel~~~ldp~~~~~~ 462 (468)
T 3r6q_A 436 RELCIKY-----GVLTEEQLNEILNPYEMIHP 462 (468)
T ss_dssp HHHHHHH-----TSSCHHHHHHHSCHHHHTSC
T ss_pred HHHHHHc-----CCCCHHHHHHHcCHHHhcCC
Confidence 9998864 344 4689999999987753
No 13
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=100.00 E-value=8.4e-57 Score=475.36 Aligned_cols=340 Identities=17% Similarity=0.187 Sum_probs=273.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
+++|+..|++|+++..+.+.|..|+++|.++|++|+++|||||||+|||+||||||++++|+++|.|+++||.++++++.
T Consensus 137 i~dta~~L~lr~al~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~l~ 216 (503)
T 2j91_A 137 VGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCLWIQDLCMDLQNLKRVRDDLR 216 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCccceecchHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCC------cCcch-------HHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 81 ISPLGSAALAGTT------HHINR-------YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFII 147 (455)
Q Consensus 81 ~~~lGga~~~G~~------~~~~~-------~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~ 147 (455)
.+.+||++ ||+ +|+|+ +++++.|||+.+..|+. |+.+||+++++.++++.++++|+|||+|+++
T Consensus 217 ~lg~gG~~--GT~a~~~~~f~~D~~~~~~v~~~~a~~LGl~~~~~~s~-~~~~rd~~~e~~~~la~la~~L~kia~Dirl 293 (503)
T 2j91_A 217 FRGVKGTT--GTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG-QTYTRKVDIEVLSVLASLGASVHKICTDIRL 293 (503)
T ss_dssp BCCSCCTT--SSCHHHHHHTTTCHHHHHHHHHHHHHHTTCSCBCSCCS-SSCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccccc--cchhhhccccCCchHHHHHHHHHHHHHhCCCCCCCccc-ccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888875 676 67776 78999999997666664 8999999999999999999999999999998
Q ss_pred hhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHH
Q psy3416 148 FMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFIST 227 (455)
Q Consensus 148 l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~ 227 (455)
|++ ++|+++|...
T Consensus 294 l~s--~~ei~ep~~~----------------------------------------------------------------- 306 (503)
T 2j91_A 294 LAN--LKEMEEPFEK----------------------------------------------------------------- 306 (503)
T ss_dssp HHH--HTSEECCC-------------------------------------------------------------------
T ss_pred Hhc--cceeeccccC-----------------------------------------------------------------
Confidence 887 7777665321
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccc
Q psy3416 228 CCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL 307 (455)
Q Consensus 228 ~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 307 (455)
.++|||||||||||+.+|.+++++++++|++.+++...+++++.++.+.
T Consensus 307 -------------------------------~q~GSSiMP~K~NPv~~E~i~~~a~~v~g~~~~~~~~~~~~~~erd~~~ 355 (503)
T 2j91_A 307 -------------------------------QQIGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERTLDD 355 (503)
T ss_dssp ----------------------------------------CCCCCHHHHHHHHHHHHHHHTTHHHHHHHHTCCTTCCGGG
T ss_pred -------------------------------CCCCCCCCccccCcHHHHHHHHHHHHHHHHHHHHHHHHccCcccccccc
Confidence 2567777778888888888888899999999888887777654444443
Q ss_pred c-cccchHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhcc--CHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHH-
Q psy3416 308 Q-EDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIK--GFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNE- 383 (455)
Q Consensus 308 ~-~~~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~--~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~- 383 (455)
+ ..+..+++++..++.++..+..++++|+||+++|++|+.. |++.++.++++|+++|+||++||++|++.++++-+
T Consensus 356 s~~~~~~l~~~~~~~~~~l~~~~~~l~gL~vn~erm~~~l~~s~~~~ate~v~~~lv~~G~~~~~Ah~~v~~~a~~~g~~ 435 (503)
T 2j91_A 356 SANRRICLAEAFLTADTILNTLQNISEGLVVYPKVIERRIRQELPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASV 435 (503)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSCEECHHHHHHHHHHHHHHHSHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhHHHHHHHHHHHHHHHHHHHcCCEECHHHHHHHHHhccChHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHhhhH
Confidence 3 3445788999999999999999999999999999999965 56667889999999999999999999988876533
Q ss_pred ---c--CCCchhhhHHHHhhhhcCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHH-HHHHHHHHHhchhh
Q psy3416 384 ---K--HKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQ-GFRFYIQKITNKLE 450 (455)
Q Consensus 384 ---~--g~~~~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~-~~~~~~~~~~~~~~ 450 (455)
. +.++.+.+..+ +.+. ...+++..++||+ .|+|+++++|+++++ .+++.++++...+.
T Consensus 436 V~~~~~~~~l~e~l~~~-~~~~-l~~eel~~~ldp~-------~~~g~a~~~v~~~l~~~~~~~l~~~~~~~~ 499 (503)
T 2j91_A 436 VKQEGGDNDLIERIQVD-AYFS-PIHSQLDHLLDPS-------SFTGRASQQVQRFLEEEVYPLLKPYESVMK 499 (503)
T ss_dssp HHHSCCCCCHHHHHHHC-GGGH-HHHTTHHHHTCGG-------GGSTTHHHHHHHHHHHTHHHHHGGGCC---
T ss_pred HHHHHhcccHHHHHhcC-cccC-CCHHHHHHhcCHH-------HhCCcHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 2 23555443321 1111 1135789999998 489999999999996 78999988776544
No 14
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=100.00 E-value=7.1e-57 Score=473.54 Aligned_cols=303 Identities=18% Similarity=0.282 Sum_probs=261.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|++++||||||+|||+||||||+|++|++.|.|+++||.+++++++
T Consensus 147 v~~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~rd~~RL~~~~~~~~ 226 (478)
T 1jsw_A 147 AYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLL 226 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCeeeccccCccceeehHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHH-------HHHhcCCC-CCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q psy3416 81 ISPLGSAALAGTTHHINRYL-------TAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN-- 150 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~-------~a~~LG~~-~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~-- 150 (455)
.+||||+++ ||++++++.+ +++.|||+ .+..|+++++.+||+++|++++|+.++.+|+|||+|+++|++
T Consensus 227 ~~~lGg~Av-GT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~p 305 (478)
T 1jsw_A 227 EVNLGATAI-GTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGP 305 (478)
T ss_dssp EECCSCCSS-SSCSSCTTTHHHHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred cCCCCCccc-cCCccCCcchHHHHHHHHHHHcCCCCCcCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999887 9999998765 99999999 578889999999999999999999999999988888888873
Q ss_pred -CCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q psy3416 151 -PQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229 (455)
Q Consensus 151 -~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~ 229 (455)
+|++|+++
T Consensus 306 r~e~gei~l----------------------------------------------------------------------- 314 (478)
T 1jsw_A 306 RAGLNEINL----------------------------------------------------------------------- 314 (478)
T ss_dssp TTSCCCEEC-----------------------------------------------------------------------
T ss_pred ccCceeEEC-----------------------------------------------------------------------
Confidence 36666544
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccc--
Q psy3416 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL-- 307 (455)
Q Consensus 230 ~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-- 307 (455)
|+ .++|||||||||||+.+|.++++++++.|++.+++...++- .+++|.
T Consensus 315 --------------------------p~-~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~~--~~e~~~~~ 365 (478)
T 1jsw_A 315 --------------------------PE-LQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAG--QLQLNVME 365 (478)
T ss_dssp --------------------------CC-CSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTC--BTTBCTTH
T ss_pred --------------------------CC-CCCCCCCCCcccCCHHHHHHHHHHHHHHhHHHHHHHHHhcc--chhhcccc
Confidence 44 56677777777777778888888888999888887776642 233332
Q ss_pred ccccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCC
Q psy3416 308 QEDKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHK 386 (455)
Q Consensus 308 ~~~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~ 386 (455)
...+..++++++.+..++..+. .++++|+||+++|++|+..++.++++++..+ +|+.+++++++|.++|+
T Consensus 366 p~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l~t~La~~l---------g~~~a~~~v~~a~~~g~ 436 (478)
T 1jsw_A 366 PVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFI---------GHHNGDIVGKICAETGK 436 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCTTCGGGTHHHH---------CHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHccCeecHHHHHHHHHhCchHHHHHHHhh---------hHHHHHHHHHHHHHhCC
Confidence 2235579999999999999998 6999999999999999999998999999877 68889999999999999
Q ss_pred CchhhhHHHHhhhhcCC-chHHHHhcChhhhhh
Q psy3416 387 TFKDLSLAELKTFHSYI-SDDIIDILCIENSIK 418 (455)
Q Consensus 387 ~~~e~~~~~~~~~~~~~-~~~l~~~ldp~~~v~ 418 (455)
++.++..++ ..+ ++++.+++||++++.
T Consensus 437 ~l~e~~~~~-----~~l~~~~~~~~ldp~~~~~ 464 (478)
T 1jsw_A 437 SVREVVLER-----GLLTEAELDDIFSVQNLMH 464 (478)
T ss_dssp CHHHHHHHH-----TSSCSHHHHTSCCC-----
T ss_pred CHHHHHHhc-----CCCCHHHHHHhCCHHHHhC
Confidence 999998864 344 568999999997554
No 15
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=100.00 E-value=1e-56 Score=470.89 Aligned_cols=303 Identities=17% Similarity=0.188 Sum_probs=261.5
Q ss_pred ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHIDI-IIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~-l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++|+++.. +.+.|..|+++|.++|++|+++|||||||+|||+||||||+|++|++.|.|+++||.++++++
T Consensus 143 ~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~l 222 (467)
T 1fur_A 143 VFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHV 222 (467)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCccceeeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5799999999999997 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCcchHH-------HHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Q psy3416 80 NISPLGSAALAGTTHHINRYL-------TAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM-- 149 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~~~~~-------~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~-- 149 (455)
+.+||||+++ ||++++++.+ +++.|||+. +..|+++|+++||+++++.++|+.++.+|+|||+|+++|+
T Consensus 223 ~~~~lGgtAv-GT~~~~~~~~~~~v~~~la~~LGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~ 301 (467)
T 1fur_A 223 AELALGGTAV-GTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASG 301 (467)
T ss_dssp TEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhcCcCcchh-cCCccCChhHHHHHHHHHHHHhCCCCccCCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999877 9999998755 999999994 7789999999999999999999999999998888888888
Q ss_pred -cCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 150 -NPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 150 -~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
++|++|+++|
T Consensus 302 ~r~~~gei~lp--------------------------------------------------------------------- 312 (467)
T 1fur_A 302 PRCGIGEISIP--------------------------------------------------------------------- 312 (467)
T ss_dssp SSSSCCSEECC---------------------------------------------------------------------
T ss_pred CccCceeEECC---------------------------------------------------------------------
Confidence 4467666554
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccc-
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL- 307 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~- 307 (455)
+ .++|||||||||||+.+|.+++++++++|++.+++.+.+. .++++|.
T Consensus 313 ----------------------------~-~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~--g~~e~~~~ 361 (467)
T 1fur_A 313 ----------------------------E-NEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGAS--GNFELNVF 361 (467)
T ss_dssp ----------------------------C-CSCCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHT--CBTTBCCC
T ss_pred ----------------------------C-CCCCCCCCCcccCCHHHHHHHHHHHHHHHHHHHHHHHHhc--CCccccch
Confidence 3 2377788888888888888889999999999998887653 2344442
Q ss_pred -ccccchHhHHHHHHHHHHHHH-HHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcC
Q psy3416 308 -QEDKLPLFDTVDNIIMCLVAS-GKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKH 385 (455)
Q Consensus 308 -~~~~~~l~~~~~~~~~~l~~~-~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g 385 (455)
......++++++.+..++..+ ..++++|+||+++|++|+..++.++++|++++ +|+.+++++++|.++|
T Consensus 362 ~~~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l~t~La~~l---------g~~~a~~~~~~a~~~g 432 (467)
T 1fur_A 362 RPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNTHI---------GYDKAAEIAKKAHKEG 432 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSTTHHHHHTTS---------CHHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHccCeeCHHHHHHHHHhCccHHHHhHhhc---------cHHHHHHHHHHHHHcC
Confidence 212237889999999999999 56999999999999999998888888877655 5888888899999999
Q ss_pred CCchhhhHHHHhhhhcCC-chHHHHhcChhhhhh
Q psy3416 386 KTFKDLSLAELKTFHSYI-SDDIIDILCIENSIK 418 (455)
Q Consensus 386 ~~~~e~~~~~~~~~~~~~-~~~l~~~ldp~~~v~ 418 (455)
+++.++..++ ..+ ++++.+++||++++.
T Consensus 433 ~~l~e~~~~~-----~~l~~~e~~~~ldp~~~~~ 461 (467)
T 1fur_A 433 LTLKAAALAL-----GYLSEAEFDSWVRPEQMVG 461 (467)
T ss_dssp CCHHHHHHHT-----TSSCHHHHHHHCCGGGC--
T ss_pred CCHHHHHHhc-----CCCCHHHHHHhcCHHHHhC
Confidence 9999988864 345 468999999997554
No 16
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=100.00 E-value=4.1e-57 Score=474.00 Aligned_cols=307 Identities=17% Similarity=0.214 Sum_probs=262.2
Q ss_pred ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHID-IIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++|+++. .+.+.|..|+++|.++|++|+++|||||||+|||+||||||++++|++.|.|+++||.++++++
T Consensus 143 ~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~RL~~~~~~~ 222 (466)
T 1vdk_A 143 TFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGL 222 (466)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCccCCcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCcchHH-------HHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Q psy3416 80 NISPLGSAALAGTTHHINRYL-------TAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM-- 149 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~~~~~-------~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~-- 149 (455)
+.+||||+++ ||++++++.+ +++.|||+. +..|+++++++||++++++++++.++.+|+|||+|+++|+
T Consensus 223 ~~~~lGg~Av-GT~~~~~~~~~~~v~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~ 301 (466)
T 1vdk_A 223 YNLAIGGTAV-GTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASG 301 (466)
T ss_dssp GEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCB
T ss_pred hhcCCCcccc-CCCccCCchHHHHHHHHHHHHcCCCCCCCcchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999877 9999998754 799999995 7889999999999999999999999999998888888887
Q ss_pred -cCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 150 -NPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 150 -~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
++|++|+++|
T Consensus 302 ~r~~~gei~lp--------------------------------------------------------------------- 312 (466)
T 1vdk_A 302 PYAGIGEITIP--------------------------------------------------------------------- 312 (466)
T ss_dssp SSSSCCSEECC---------------------------------------------------------------------
T ss_pred CCCCceeEECC---------------------------------------------------------------------
Confidence 4466666554
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccc
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ 308 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 308 (455)
+. ++|||||||||||+.+|.+++++++++|++.+++....+-.+..|-+..
T Consensus 313 ----------------------------~~-~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~~~~~g~~e~~~~~~ 363 (466)
T 1vdk_A 313 ----------------------------AN-EPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKP 363 (466)
T ss_dssp ----------------------------CC-SCCSSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTBCSCHH
T ss_pred ----------------------------CC-CCcCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHccchhhhhhhH
Confidence 32 3777778888888888888888999999998888876532111111112
Q ss_pred cccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCC
Q psy3416 309 EDKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKT 387 (455)
Q Consensus 309 ~~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~ 387 (455)
..+..++++++.+..++..+. .++++|+||+++|++|+..++.++++|++++ +|+.+++++++|.++|++
T Consensus 364 ~~~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~~~~l~t~La~~l---------g~~~a~~~v~~a~~~g~~ 434 (466)
T 1vdk_A 364 VMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNKAI---------GYDKAAEIVKKALKEKKT 434 (466)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCGGGGHHHHHHH---------CSHHHHTTTTTSCC--CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCEEcHHHHHHHHHhcchHHHHHHHhc---------cHHHHHHHHHHHHHcCCC
Confidence 224479999999999999995 6999999999999999999999999999887 488888888888899999
Q ss_pred chhhhHHHHhhhhcCC-chHHHHhcChhhhhhhh
Q psy3416 388 FKDLSLAELKTFHSYI-SDDIIDILCIENSIKFK 420 (455)
Q Consensus 388 ~~e~~~~~~~~~~~~~-~~~l~~~ldp~~~v~~~ 420 (455)
+.++..++ ..+ ++++.+++||++++.++
T Consensus 435 l~e~~~~~-----~~l~~~~~~~~ldp~~~~~~~ 463 (466)
T 1vdk_A 435 LKQAALEL-----GYLTEEEFDRIVVPMRLAKPH 463 (466)
T ss_dssp HHHHHHHT-----SSSCHHHHHHHCCHHHHHCCC
T ss_pred HHHHHHhc-----CCCCHHHHHHHcCHHHhcCCC
Confidence 99998864 345 46899999999877643
No 17
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=100.00 E-value=1.6e-56 Score=470.20 Aligned_cols=308 Identities=19% Similarity=0.206 Sum_probs=254.3
Q ss_pred ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHID-IIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++|+++. .+.+.|..|+++|.++|++|++++||||||+|||+||||||+|++|++.|.|+++||.++++++
T Consensus 164 v~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~PiT~G~~~~~~a~~l~rd~~RL~~~~~~l 243 (495)
T 4adm_A 164 TFPTATHIAATEAAVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERVRACLPRL 243 (495)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCeeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 589999999999985 6999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCcch-------HHHHHhcCC--CCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q psy3416 80 NISPLGSAALAGTTHHINR-------YLTAKLLDF--EKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN 150 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~~~-------~~~a~~LG~--~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~ 150 (455)
+.+||||+++ ||++++++ +++++.||| ..+..|+++|+++||+++++.++|+.++.+|+|||+|+++|++
T Consensus 244 ~~~~LGgtAv-GT~~~~~~~~~~~v~~~la~~lG~~~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsS 322 (495)
T 4adm_A 244 GELAIGGTAV-GTGLNAPDDFGVRVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGS 322 (495)
T ss_dssp TEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHCCTTCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred hcCCCCCeee-cCCccCChhHHHHHHHHHHHHhCCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9999999776 88887776 348999999 4577899999999999999999999999999988888888875
Q ss_pred ---CCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHH
Q psy3416 151 ---PQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFIST 227 (455)
Q Consensus 151 ---~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~ 227 (455)
+|++|++
T Consensus 323 gpr~e~gei~---------------------------------------------------------------------- 332 (495)
T 4adm_A 323 GPLTGLAEIQ---------------------------------------------------------------------- 332 (495)
T ss_dssp BSTTSCCCEE----------------------------------------------------------------------
T ss_pred CCCCCcceEE----------------------------------------------------------------------
Confidence 5666654
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccc
Q psy3416 228 CCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL 307 (455)
Q Consensus 228 ~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 307 (455)
+|+ .++|||||||||||+++|.+++++++++|++.+++.+.++.++..|-..
T Consensus 333 ---------------------------lp~-~q~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~ 384 (495)
T 4adm_A 333 ---------------------------LPD-LQPGSSIMPGKVNPVLPEAVTQVAAQVIGNDAAIAWGGANGAFELNVYI 384 (495)
T ss_dssp ---------------------------CCC-C---------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCH
T ss_pred ---------------------------CCC-CCCCCCCCCCCCCcHHHHHHHHHHHHHHhHHHHHHHHHHcChHHhhhhH
Confidence 443 4677888888888888888899999999999988877766555544222
Q ss_pred ccccchHhHHHHHHHHHHHHH-HHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCC
Q psy3416 308 QEDKLPLFDTVDNIIMCLVAS-GKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHK 386 (455)
Q Consensus 308 ~~~~~~l~~~~~~~~~~l~~~-~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~ 386 (455)
......++++++.+.+++..+ ..++++|+||+++|++|+..++.++++|+.++ +|+.+.+++++|.++|+
T Consensus 385 p~i~~~l~~s~~~l~~~l~~~~~~~l~gl~vn~erm~~~l~~s~~l~t~La~~i---------gy~~a~~ia~~a~~~g~ 455 (495)
T 4adm_A 385 PMMARNILESFKLLTNVSRLFAQRCIAGLTANVEHLRRLAESSPSIVTPLNSAI---------GYEEAAAVAKQALKERK 455 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCGGGGGGGHHHH---------CHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhccccHHHHhhhhh---------hHHHHHHHHHHHHHhCC
Confidence 222335899999999999999 69999999999999999999998999888877 34455556788889999
Q ss_pred CchhhhHHHHhhhhcCC-chHHHHhcChhhhh
Q psy3416 387 TFKDLSLAELKTFHSYI-SDDIIDILCIENSI 417 (455)
Q Consensus 387 ~~~e~~~~~~~~~~~~~-~~~l~~~ldp~~~v 417 (455)
++.|+.+++ +.+...+ ++++.+++||++++
T Consensus 456 ~l~e~~~~~-~~~~~~ls~eel~~~ldp~~~~ 486 (495)
T 4adm_A 456 TIRQTVIDR-GLIGDRLSIEDLDRRLDVLAMA 486 (495)
T ss_dssp CHHHHHHHT-TCCBTTBCHHHHHHHTCHHHHT
T ss_pred CHHHHHHhC-cccccCCCHHHHHHHcCHHHhc
Confidence 999998875 3333334 46899999999744
No 18
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=100.00 E-value=3.1e-56 Score=468.00 Aligned_cols=304 Identities=19% Similarity=0.231 Sum_probs=261.1
Q ss_pred ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHID-IIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++|+++. .+.+.|..|+++|.++|++|+++|||||||+|||+||||||+|++|++.|.|+++||.++++++
T Consensus 168 v~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~A~e~~~~v~~GrTHlQ~A~PiT~G~~~~~~~~~l~rd~~RL~~~~~~l 247 (488)
T 1yfm_A 168 TFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTL 247 (488)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeceecCccceEeeHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 579999999999998 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCcchHH-------HHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--
Q psy3416 80 NISPLGSAALAGTTHHINRYL-------TAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM-- 149 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~~~~~-------~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~-- 149 (455)
+.+|+||+++ ||++++++.+ +++.|||+. +..|+++++++||+++++.++|+.++.+|+|||+|+++|+
T Consensus 248 ~~~~lGgtAv-GT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsS~ 326 (488)
T 1yfm_A 248 SFLAQGGTAV-GTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSG 326 (488)
T ss_dssp TEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhcCCCCccc-cCCccCChhHHHHHHHHHHHHhCCCCccCccHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999887 9999988753 799999994 6888999999999999999999999999999988888888
Q ss_pred -cCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 150 -NPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 150 -~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
++|++|+++|+.
T Consensus 327 pr~g~gei~lp~~------------------------------------------------------------------- 339 (488)
T 1yfm_A 327 PRCGYHELMLPEN------------------------------------------------------------------- 339 (488)
T ss_dssp SSSSCCCEECCCC-------------------------------------------------------------------
T ss_pred CcCCceeEECCCC-------------------------------------------------------------------
Confidence 446776655532
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccc
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ 308 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 308 (455)
++||||||||+||+++|.+++++++++|++.+++.+...-.+..|-+..
T Consensus 340 -------------------------------~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~g~~eln~~~p 388 (488)
T 1yfm_A 340 -------------------------------EPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKP 388 (488)
T ss_dssp -------------------------------SCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCSCHH
T ss_pred -------------------------------CCcCCCcccccCcHHHHHHHHHHHHHHhHHHHHHHHHhcccchhhhhhH
Confidence 3677778888888888888888999999998888876542122111112
Q ss_pred cccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCC
Q psy3416 309 EDKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKT 387 (455)
Q Consensus 309 ~~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~ 387 (455)
..+..++++++.+.+++..+. .++++|+||+++|++++..++.++++|+.++ +|+.+++++++|.++|++
T Consensus 389 ~~~~~l~~s~~~l~~~l~~~~~~~i~gl~vn~erm~~~l~~s~~l~t~La~~l---------g~~~a~~i~~~a~~~g~~ 459 (488)
T 1yfm_A 389 VMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKI---------GYDAASKVAKNAHKKGIT 459 (488)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGTTTGGGT---------CHHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHccCchHHHHHHHhc---------cHHHHHHHHHHHHHhCCC
Confidence 224478899999999999995 6999999999999999998888888877765 488888888899999999
Q ss_pred chhhhHHHHhhhhcCC-chHHHHhcChhhhh
Q psy3416 388 FKDLSLAELKTFHSYI-SDDIIDILCIENSI 417 (455)
Q Consensus 388 ~~e~~~~~~~~~~~~~-~~~l~~~ldp~~~v 417 (455)
+.|+..++ ..+ .+++.+++||++++
T Consensus 460 l~e~~~~~-----~~l~~eel~~~ldp~~~~ 485 (488)
T 1yfm_A 460 LKESALEL-----GVLTEKEFDEWVVPEHML 485 (488)
T ss_dssp HHHHHHHT-----TSCCHHHHHHHCCGGGCC
T ss_pred HHHHHHhc-----CCCCHHHHHHhcCHHHhc
Confidence 99998864 355 46899999999644
No 19
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=100.00 E-value=2.6e-55 Score=459.13 Aligned_cols=302 Identities=19% Similarity=0.214 Sum_probs=250.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
+++|+++|++|+++..+.+.|..|+++|.++|++|+++|||||||+|||+|+||||+|++|++.|.|+++||.+++++++
T Consensus 164 v~~Ta~~L~~~~~l~~L~~~L~~L~~~L~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l~ 243 (478)
T 3ocf_A 164 VYPTAVRLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLREDTARLEEVAALFR 243 (478)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeecccccccceeecHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcch-------HHHHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc--
Q psy3416 81 ISPLGSAALAGTTHHINR-------YLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN-- 150 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~-------~~~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~-- 150 (455)
.+|+||+++ ||++++++ +++++.|||+. +..|.++++++||+++++.++|+.++.+|+|||+|+++|++
T Consensus 244 ~~~lGgtAv-GTg~~~~~~~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgp 322 (478)
T 3ocf_A 244 EVNLGGTAI-GTRINASHAYAEQAIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGP 322 (478)
T ss_dssp EECTTC------------CHHHHHHHHHHHHHTSCCEECSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBS
T ss_pred HhCCCCeee-CCCcCCChhHHHHHHHHHHHhcCCCCccCCChhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999776 88877765 46799999994 67899999999999999999999999999999999988874
Q ss_pred -CCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q psy3416 151 -PQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229 (455)
Q Consensus 151 -~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~ 229 (455)
+|++|+++|
T Consensus 323 r~g~gEi~lp---------------------------------------------------------------------- 332 (478)
T 3ocf_A 323 RSGLGEIRLP---------------------------------------------------------------------- 332 (478)
T ss_dssp SSSCCCEECC----------------------------------------------------------------------
T ss_pred CCceeEEECC----------------------------------------------------------------------
Confidence 367766544
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc
Q psy3416 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE 309 (455)
Q Consensus 230 ~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 309 (455)
+ .++||||||||+||+++|.+++++++++|++.++..+..+.++..|-.-..
T Consensus 333 ---------------------------~-~q~GSSiMP~K~NPv~~E~i~~~a~~V~G~~~~i~~a~~~g~leln~~~p~ 384 (478)
T 3ocf_A 333 ---------------------------A-VQPGSSIMPGKVNPVIPESVNQVCYQVIGNDLTVTMAAESGQLQLNAFEPL 384 (478)
T ss_dssp ---------------------------C-CSCCBTTBTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHH
T ss_pred ---------------------------C-CCCcCCCCCcccCcHHHHHHHHHHHHHHhHHHHHHHHHhcCcchhcccchh
Confidence 2 466777777778888888888888899999888766655433322210011
Q ss_pred ccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCc
Q psy3416 310 DKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTF 388 (455)
Q Consensus 310 ~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~ 388 (455)
....++++++.+.+++..+. .|+++|+||+++|++|+..++.++++|+.++ +|+.+++++++|.++|+++
T Consensus 385 i~~~l~~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~lvtaLa~~i---------gy~~a~~ia~~A~~~g~~l 455 (478)
T 3ocf_A 385 IVYNILSSMRLLGRAMTNLAERCVDGIEANVERCRAGAEESISLATALVPVV---------GYARAAEIAKQALASGQTV 455 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHTCGGGGGGGHHHH---------HHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCCEECHHHHHHHHHhCccHHHHhhHHH---------HHHHHHHHHHHHHHhCCCH
Confidence 12258899999999999997 5899999999999999999999999999888 7888889999999999999
Q ss_pred hhhhHHHHhhhhcCCchHHHHhcChhh
Q psy3416 389 KDLSLAELKTFHSYISDDIIDILCIEN 415 (455)
Q Consensus 389 ~e~~~~~~~~~~~~~~~~l~~~ldp~~ 415 (455)
.|++++. .+.++++.+++||++
T Consensus 456 ~e~~~~~-----~~s~eel~~~ldp~~ 477 (478)
T 3ocf_A 456 MEVAISK-----GLDASALTIMLDPLR 477 (478)
T ss_dssp HHHHHHT-----TCCCHHHHHHTCSCC
T ss_pred HHHHHHc-----CCCHHHHHHhcCccc
Confidence 9998863 234568999999974
No 20
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=100.00 E-value=4.3e-55 Score=459.07 Aligned_cols=318 Identities=13% Similarity=0.143 Sum_probs=252.6
Q ss_pred ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHID-IIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++|+++. .+.+.|..|+++|.++|++|+++|||||||+|||+||||||++++|+++|.|+++||.+++
T Consensus 125 v~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~--- 201 (465)
T 2qga_B 125 INNVAYATCLKACLNDVVIPCLEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRRVK--- 201 (465)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHSC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 579999999999999 7999999999999999999999999999999999999999999999999999999998877
Q ss_pred cccCCCccccCCC------CcC------cchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 80 NISPLGSAALAGT------THH------INRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFII 147 (455)
Q Consensus 80 ~~~~lGga~~~G~------~~~------~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~ 147 (455)
.+++|||++ || .+| +++..+++.|||+.+.. + +++.+||++++++++++.++++++|||+|+++
T Consensus 202 -~~~~~~GAv-GT~~a~~~~~p~~d~~~~~~~~~~~~LGl~~~~~-~-~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~l 277 (465)
T 2qga_B 202 -VCAKFNGAV-GNFNAHKVASKDTDWVNTIGLFLKKHFNLTYSIY-C-TQIQDHDYICELCDGLARANGTLIDLCVDIWL 277 (465)
T ss_dssp -CEECCCCTT-SSCHHHHHHCTTCCHHHHHHHHHHHHHCCEECCC-C-SSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -Hhccccchh-cCccccccccCcccHHHHHHHHHHHHhCCCCCCC-c-cchhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455556565 77 224 55555666699997653 3 68899999999999999999999999999888
Q ss_pred hhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHH
Q psy3416 148 FMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFIST 227 (455)
Q Consensus 148 l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~ 227 (455)
|++.|+.+
T Consensus 278 l~s~~~~~------------------------------------------------------------------------ 285 (465)
T 2qga_B 278 YISNNLLK------------------------------------------------------------------------ 285 (465)
T ss_dssp HHHTTSEE------------------------------------------------------------------------
T ss_pred HhCCccee------------------------------------------------------------------------
Confidence 88866522
Q ss_pred HHHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccc
Q psy3416 228 CCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL 307 (455)
Q Consensus 228 ~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 307 (455)
+.++.+++|||+|||||||+.+|.++++++.+.+....++..+ .|++||||+
T Consensus 286 --------------------------e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~~~~~~~~~~~~~l--~~~~~erdl 337 (465)
T 2qga_B 286 --------------------------LKVKEKEVGSSTMPHKVNPIDFENAEGNLHIANAFFKLFSSKL--PTSRLQRDL 337 (465)
T ss_dssp --------------------------EC-------CCSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHT--TCCSTTBCT
T ss_pred --------------------------eeCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHHHhh--cchhhhhhh
Confidence 1222355667777777777777777777777777766666655 478999999
Q ss_pred ccc--cchHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhccCHhH-HHHHHHHHHHcCCChhHHHHHHHHHHHHHHHc
Q psy3416 308 QED--KLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSI-STDVADYLVKKGVPFRTSHEIVGSIIKYCNEK 384 (455)
Q Consensus 308 ~~~--~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~-a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~ 384 (455)
+++ +..++++++.+..+++.+..++++|+||+++|++|+..++.+ ||+++++|+++|+ ++||++|+++++.+..+
T Consensus 338 ~~s~~~r~l~~~~~~~~~~l~~~~~~l~~l~vn~~~m~~~l~~~~~~~ae~v~~~L~~~G~--~~A~~iv~~~~~~~~~~ 415 (465)
T 2qga_B 338 SDSTVLRNIGSSLAYCLIAYKSVLKGLNKIDIDRRNLEEELNQNWSTLAEPIQIVMKRHNY--VDAYEELKQFTRGKVID 415 (465)
T ss_dssp HHHHHHTTHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHHTCGGGGHHHHHHHHHHTTC--SCHHHHHHHHHTTSCCC
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCCChHHHHHHHHHHHhCh--HHHHHHHHHHHhhhhhc
Confidence 887 446899999999999999999999999999999999766644 8999999998755 79999999999733334
Q ss_pred CCCchhhhHHHHhh-hhcCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHH
Q psy3416 385 HKTFKDLSLAELKT-FHSYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQ 436 (455)
Q Consensus 385 g~~~~e~~~~~~~~-~~~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~ 436 (455)
+.++.++..++ +. +.+.+.+++. ++||+ .|.|.++++|++++.
T Consensus 416 ~~~l~~~~~~~-~~~~~~~~~~~l~-~ldp~-------~y~G~a~~~v~~~~~ 459 (465)
T 2qga_B 416 QKIMQEFIKTK-CAFLPQDVVDQLL-ELTPA-------TYTGYADYLAKNVER 459 (465)
T ss_dssp HHHHHHHHHHH-STTSCHHHHHHHH-HCCGG-------GCCTTHHHHHHTHHH
T ss_pred cCCHHHHHHhc-hhcCCcchHHHHH-hcCHH-------HhCCcHHHHHHHHHH
Confidence 44455555543 10 2221235677 99998 599999999998874
No 21
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=100.00 E-value=6.3e-54 Score=448.06 Aligned_cols=300 Identities=17% Similarity=0.222 Sum_probs=249.0
Q ss_pred ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHI-DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~-~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
+++|+++|++|+.+ ..+.+.|..|+++|.++|++|++++||||||+|+|+|+||||+|++|++.|.|+++||.++++++
T Consensus 170 ~~~Ta~~l~~~~~~~~~L~~~L~~L~~aL~~kA~e~~d~v~~GRTHlQ~A~PiTlG~~~~~~a~~l~rd~~RL~~~~~~l 249 (490)
T 3e04_A 170 TFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQVKYAMTRIKAAMPRI 249 (490)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTCTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCceeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999888 47999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCcchH-------HHHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q psy3416 80 NISPLGSAALAGTTHHINRY-------LTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN- 150 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~~~~-------~~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~- 150 (455)
+.+|+||+++ ||++++++. ++++.|||+. +..|.++++++||+++|+.++|+.++.+|+|||+|+++|++
T Consensus 250 ~~~~lGgtAv-GTg~~~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~ve~~~~L~~la~~L~Kia~DlrllsSg 328 (490)
T 3e04_A 250 YELAAGGTAV-GTGLNTRIGFAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSG 328 (490)
T ss_dssp SEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCccc-cCCCcCChhHHHHHHHHHHHHhCCCCcCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999986 898888764 4999999996 67899999999999999999999999999999999999884
Q ss_pred --CCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 151 --PQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 151 --~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
+|++|+++|+
T Consensus 329 pr~g~gEi~lp~-------------------------------------------------------------------- 340 (490)
T 3e04_A 329 PRSGLGELILPE-------------------------------------------------------------------- 340 (490)
T ss_dssp SSSSCCCEECCC--------------------------------------------------------------------
T ss_pred CCCCeeEEECCC--------------------------------------------------------------------
Confidence 4677765543
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccc
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ 308 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 308 (455)
.++||||||||+||+++|.+++++++++|++.++..... ...++.+..
T Consensus 341 ------------------------------~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~ai~~a~~--~g~~eln~~ 388 (490)
T 3e04_A 341 ------------------------------NEPGSSIMPGKVNPTQCEAMTMVAAQVMGNHVAVTVGGS--NGHFELNVF 388 (490)
T ss_dssp ------------------------------CSCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH--TCBTTBCCC
T ss_pred ------------------------------CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHh--ccccccccc
Confidence 356777777777777777788888888888777643322 112222210
Q ss_pred c--ccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcC
Q psy3416 309 E--DKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKH 385 (455)
Q Consensus 309 ~--~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g 385 (455)
. ....++++++.+.+++..+. .++++|+||+++|++++..++.++|+|+.++ +|+.+++++++|.++|
T Consensus 389 ~p~~~~~ll~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~lvTaLa~~i---------Gy~~a~~iak~A~~~g 459 (490)
T 3e04_A 389 KPMMIKNVLHSARLLGDASVSFTENCVVGIQANTERINKLMNESLMLVTALNPHI---------GYDKAAKIAKTAHKNG 459 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGGGGHHHH---------CHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhchHHHHHhhhHH---------HHHHHHHHHHHHHHHC
Confidence 0 01247788888888777776 7999999999999999999999999998887 7888889999999999
Q ss_pred CCchhhhHHHHhhhhcCCc-hHHHHhcChhh
Q psy3416 386 KTFKDLSLAELKTFHSYIS-DDIIDILCIEN 415 (455)
Q Consensus 386 ~~~~e~~~~~~~~~~~~~~-~~l~~~ldp~~ 415 (455)
+++.|++++. .+++ +++.+++||++
T Consensus 460 ~~l~e~~~~~-----~~ls~eeld~~ldP~~ 485 (490)
T 3e04_A 460 STLKETAIEL-----GYLTAEQFDEWVKPKD 485 (490)
T ss_dssp CCHHHHHHHH-----TSCCHHHHHHHCCGGG
T ss_pred CCHHHHHHHc-----CCCCHHHHHHHcCHHH
Confidence 9999988753 3555 58999999985
No 22
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=100.00 E-value=1.1e-53 Score=446.07 Aligned_cols=300 Identities=20% Similarity=0.235 Sum_probs=251.3
Q ss_pred ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHI-DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~-~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
+++|+++|++|+.+ ..+.+.|..|+++|.++|++|+++|||||||+|||+||||||+|++|++.|.|+++||.++++++
T Consensus 164 ~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~kA~e~~d~v~~GrTHlQ~A~P~TlG~~~~~~~~~l~rd~~RL~~~~~~l 243 (482)
T 3gtd_A 164 SFPTAMHIATVLATKQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQIEYALERIEDALKKV 243 (482)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTGGGCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCcEeeccccCccCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 47999999999988 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCcchH-------HHHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-
Q psy3416 80 NISPLGSAALAGTTHHINRY-------LTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN- 150 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~~~~-------~~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~- 150 (455)
+.+|+||+++ ||++++++. ++++.|||+. +..|.++++++||+++|+.++|+.++.+|+|||+|+++|++
T Consensus 244 ~~~~lGgtAv-GT~~~~~~~~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSg 322 (482)
T 3gtd_A 244 YLLAQGGTAV-GTGINSKIGFDIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSG 322 (482)
T ss_dssp TEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCccc-cCCCcCCchhHHHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 9999999886 898888764 6999999996 66889999999999999999999999999999999999884
Q ss_pred --CCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 151 --PQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 151 --~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
+|++|+++|+
T Consensus 323 pr~g~gEi~lp~-------------------------------------------------------------------- 334 (482)
T 3gtd_A 323 PRCGLGELHLPE-------------------------------------------------------------------- 334 (482)
T ss_dssp SSSSCCCEECCC--------------------------------------------------------------------
T ss_pred CccCeeEEECCC--------------------------------------------------------------------
Confidence 4677765543
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccc
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ 308 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 308 (455)
.++||||||||+||+++|.+++++++++|++.++...... ..++++..
T Consensus 335 ------------------------------~~~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~--g~~eln~~ 382 (482)
T 3gtd_A 335 ------------------------------NEPGSSIMPGKVNPTQVEALTMVCTQVMGNHVTVTIAGSN--GHLELNVF 382 (482)
T ss_dssp ------------------------------CSCCCSSSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTC--CBTTBCCC
T ss_pred ------------------------------CCCCCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHhc--ccchhccc
Confidence 3567777777777777778888888888888776543322 22333321
Q ss_pred cc--cchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcC
Q psy3416 309 ED--KLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKH 385 (455)
Q Consensus 309 ~~--~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g 385 (455)
.- -..+++++..+.+++..+. .|+++|+||+++|++++..++.++++|+..+ +|+.+.+++++|.++|
T Consensus 383 ~pl~~~~~l~s~~ll~~~~~~~~~~~v~gl~vn~erm~~~l~~s~~lvTaLa~~i---------Gy~~a~~ia~~A~~~g 453 (482)
T 3gtd_A 383 KPVIIYNILQSIELLSDSVNSFVTHCVKGLEPNIARINTLRDKSLMLVTVLNPHI---------GYDNAAKIAKEAHKYG 453 (482)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEECHHHHHHHHHHCGGGHHHHHHHH---------CHHHHHHHHHHHHHHT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHhhhhHHHHHhhhHH---------HHHHHHHHHHHHHHhC
Confidence 10 0236677777777777665 7999999999999999999999999998887 6788888899999999
Q ss_pred CCchhhhHHHHhhhhcCCc-hHHHHhcChhh
Q psy3416 386 KTFKDLSLAELKTFHSYIS-DDIIDILCIEN 415 (455)
Q Consensus 386 ~~~~e~~~~~~~~~~~~~~-~~l~~~ldp~~ 415 (455)
+++.|++.+. .+++ +++.++|||++
T Consensus 454 ~~l~e~~~~~-----~~ls~eeld~~ldP~~ 479 (482)
T 3gtd_A 454 ITLKEAAKKL-----NFLSEEEFDKIVVPEK 479 (482)
T ss_dssp CCHHHHHHHT-----TSCCHHHHHHHHSCC-
T ss_pred CCHHHHHHHc-----CCCCHHHHHHHcCHHH
Confidence 9999988753 3454 58999999985
No 23
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=100.00 E-value=5.8e-54 Score=450.21 Aligned_cols=314 Identities=15% Similarity=0.144 Sum_probs=256.7
Q ss_pred ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHID-IIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++|+++. .+.+.|..|+++|.++|++|+++|||||||+|||+||||||++++|++.|.|+++||.+++
T Consensus 126 v~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~--- 202 (462)
T 2ptr_A 126 INNLSHALMLKTARDEVILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQVE--- 202 (462)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccCeeceechHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 579999999999999 5999999999999999999999999999999999999999999999999999999999987
Q ss_pred cccCCCccccCCC----CcC------cchHHHHHhcCCCCCCCCchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3416 80 NISPLGSAALAGT----THH------INRYLTAKLLDFEKPSENSLD-SISDRDFVIEFISTCCLIVMHLSRISEEFIIF 148 (455)
Q Consensus 80 ~~~~lGga~~~G~----~~~------~~~~~~a~~LG~~~~~~n~~~-~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l 148 (455)
..+++||++++|. .++ ++ +.+++.|||. .|+++ |+.+||++++++++++.++++++|||+|+++|
T Consensus 203 ~~~~~~GAvGT~~~~~~~~~~~~~~~v~-~~~~~~LGl~---~n~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll 278 (462)
T 2ptr_A 203 ILGKINGAVGNYNAHIAAYPEVDWHQFS-EEFVTSLGIQ---WNPYTTQIEPHDYIAELFDCVARFNTILIDFDRDVWGY 278 (462)
T ss_dssp CEECCCCTTSSCHHHHHHCTTSCHHHHH-HHHHHHTTCE---ECCCCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccCchhcchhhcccccCcccHHHHH-HHHHHHhCCC---CCchhhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4778888764332 222 44 4566679995 45677 58899999999999888888777777766666
Q ss_pred hcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 149 MNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 149 ~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
++.
T Consensus 279 ~s~----------------------------------------------------------------------------- 281 (462)
T 2ptr_A 279 IAL----------------------------------------------------------------------------- 281 (462)
T ss_dssp HHT-----------------------------------------------------------------------------
T ss_pred hCC-----------------------------------------------------------------------------
Confidence 643
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcch-hhccccc
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQT-LAYNKDL 307 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~d~ 307 (455)
++ +.++++.+++|||||||||||+.+|.++++++++.|....++. ++| .+|++|+
T Consensus 282 --------------------~~-~~E~~~~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~---~~~~~~~erd~ 337 (462)
T 2ptr_A 282 --------------------NH-FKQKTIAGEIGSSTMPHKVNPIDFENSEGNLGLSNAVLQHLAS---KLPVSRWQRDL 337 (462)
T ss_dssp --------------------TS-EEECCCTTCCSCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHH---HTTCCSTTCCT
T ss_pred --------------------cc-hhccCCCCCCcCCCCCCCCCcHHHHHHHHHHHHHHHHHHHHHH---hhhhhcccccc
Confidence 33 3345556789999999999999999999999999999888766 456 6899999
Q ss_pred ccccc--hHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHc-CCChhHHHHHHHHHHHHHHHc
Q psy3416 308 QEDKL--PLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK-GVPFRTSHEIVGSIIKYCNEK 384 (455)
Q Consensus 308 ~~~~~--~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~-g~~~r~Ah~~v~~~~~~a~~~ 384 (455)
++... .++++++.+..+++.+..++++|+||+++|++|+..++.++++.++.++.+ |++ +||++|+++++.+..+
T Consensus 338 ~~~~~~~~l~~~~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~~~~~te~~~~~l~~~G~~--~A~~iv~~~~~~~~~~ 415 (462)
T 2ptr_A 338 TDSTVLRNLGVGIGYALIAYQSTLKGVSKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIE--KPYEKLKELTRGKRVD 415 (462)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHHHHEEECHHHHHHHHTTCGGGGHHHHHHHHHHTTCS--SHHHHHHHC-----CC
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHcCCchHHHHHHHHHHhhChH--HHHHHHHHHHHHHHHc
Confidence 88655 699999999999999999999999999999999988776667766666655 776 9999999999988888
Q ss_pred CCCchhhhHHHHhhhhcCCchHHHHhcChhhhhhhhccCCCCcHHHHHHH
Q psy3416 385 HKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIGGTSPEQVKIT 434 (455)
Q Consensus 385 g~~~~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~ 434 (455)
|+++.|++.+. . +.+.+.+++. ++||+ .|.|.+++++++.
T Consensus 416 ~~~l~e~~~~~-~-~~~~~~~~l~-~ldp~-------~~~~~a~~~~~~~ 455 (462)
T 2ptr_A 416 AEGMKQFIDGL-A-LPEEEKARLK-AMTPA-------NYIGRAITMVDEL 455 (462)
T ss_dssp HHHHHHHHHTS-S-SCHHHHHHHH-TCCGG-------GCCTTHHHHHHHG
T ss_pred CCCHHHHHHhc-C-CCcccHHHHH-hCCHH-------HHhChHHHHHHHH
Confidence 88888887541 1 2222346788 99998 4999999988753
No 24
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=100.00 E-value=2.6e-52 Score=439.01 Aligned_cols=308 Identities=17% Similarity=0.195 Sum_probs=253.4
Q ss_pred ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHI-DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~-~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++||++|++++.+ +.|++.|..|+++|.++|++|++++|+||||+|||+||||||+|++|+++|.|+++||.++++++
T Consensus 175 v~~TA~~l~~~~~~~~~L~~~L~~L~~~L~~kA~~~~~~~~~GRTHlQ~A~P~TlG~~~~~~~~~l~r~~~RL~~~~~~~ 254 (495)
T 4hgv_A 175 TYPTAMHIACAERVIHDLLPALKHLHKALEEKVKAFDHIIKIGRTHTQDATPLTLGQEFSGYAAQVASSIKRIEMTLPGL 254 (495)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCeeecccCCCCceeecHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999876 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCcccc-CCCCcCcch-----HHHHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC-
Q psy3416 80 NISPLGSAAL-AGTTHHINR-----YLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNP- 151 (455)
Q Consensus 80 ~~~~lGga~~-~G~~~~~~~-----~~~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~- 151 (455)
..+++||+++ +|...+.+. +++++.+||.. +..|.++|+++||.++++.++|+.++.+|+|||+|+++|++.
T Consensus 255 ~~~~lGgtAvGtg~~~~~~~~~~v~~~la~~~gl~f~~a~n~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~S~~ 334 (495)
T 4hgv_A 255 CELAQGGTAVGTGLNAPVGFAEKVAEEIAAITGIGFTSAPNKFEALAAHDSMVFSHGAINATAAALFKIANDIRFLGSGP 334 (495)
T ss_dssp TEECTTCTTTSSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HhhcCCcchhhhcccCchhHHHHHHHHHHHHhCCCccccCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 9999999764 355555543 35777777763 556889999999999999999999999999999999999864
Q ss_pred --CcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHH
Q psy3416 152 --QFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229 (455)
Q Consensus 152 --ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~ 229 (455)
|++|+.
T Consensus 335 ~~g~~Ei~------------------------------------------------------------------------ 342 (495)
T 4hgv_A 335 RSGLGELS------------------------------------------------------------------------ 342 (495)
T ss_dssp SSSCCCEE------------------------------------------------------------------------
T ss_pred ceeeeEEe------------------------------------------------------------------------
Confidence 344432
Q ss_pred HHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc
Q psy3416 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE 309 (455)
Q Consensus 230 ~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 309 (455)
+|+ .++||||||||+||+++|.++++++++.|++.++.......++.+|.+.+.
T Consensus 343 -------------------------~p~-~q~GSSiMP~K~NPv~~E~i~~~a~~v~G~~~~i~~a~~~~~~e~n~~~~~ 396 (495)
T 4hgv_A 343 -------------------------LPE-NEPGSSIMPGKVNPTQCEALTQVCVQVFGNHAALTFAGSQGHFELNVYNPL 396 (495)
T ss_dssp -------------------------CCC-CSCCC-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHH
T ss_pred -------------------------cCc-CCcccccCccccChHHHHHHHHHHHHHHHHHHHHHHhcccccccccccchH
Confidence 332 567888888888888899999999999999999988888888889888877
Q ss_pred ccchHhHHHHHHHHHH-HHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCc
Q psy3416 310 DKLPLFDTVDNIIMCL-VASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTF 388 (455)
Q Consensus 310 ~~~~l~~~~~~~~~~l-~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~ 388 (455)
....+++++..+.+++ ..+..++++|+||+++|++++..++.++++|+..+ +|+.+.+++++|.++|+++
T Consensus 397 ~~~~ll~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~lvtaL~~~i---------Gy~~A~~iak~A~~~g~~l 467 (495)
T 4hgv_A 397 MAYNFLQSVQLLADAAISFTDNCVVGIEAREDNIKAALDRSLMLVTALAPKI---------GYDNAAKIAKTAHKNGTTL 467 (495)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGGGTHHHH---------CHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCEECHHHHHHHHhcChhHHHHhhHHH---------HHHHHHHHHHHHHHhCCCH
Confidence 7777777766665554 44558999999999999999998888888777665 4555566677788899999
Q ss_pred hhhhHHHHhhhhcCCc-hHHHHhcChhhhhhhhccCCCCc
Q psy3416 389 KDLSLAELKTFHSYIS-DDIIDILCIENSIKFKNHIGGTS 427 (455)
Q Consensus 389 ~e~~~~~~~~~~~~~~-~~l~~~ldp~~~v~~~~~~~G~a 427 (455)
+|+..+. .+++ +++.++|||++ |+|+|
T Consensus 468 re~~~~~-----~~ls~eeld~lldP~~-------~~gpA 495 (495)
T 4hgv_A 468 REEAVGG-----GYVTDEEFDAVVRPET-------MIGPA 495 (495)
T ss_dssp HHHHHTT-----TSSCHHHHHHHCCGGG-------SSSCC
T ss_pred HHHHHHc-----CCCCHHHHHHhCCHHH-------hcCCC
Confidence 9876642 3454 68999999984 77775
No 25
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=100.00 E-value=9.7e-52 Score=433.01 Aligned_cols=313 Identities=17% Similarity=0.177 Sum_probs=237.9
Q ss_pred ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHID-IIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
|++|+++|++|+++. .+.+.|..|+++|.++|++|+++|||||||+|||+||||||++++|++.|.|+++||.+++
T Consensus 129 v~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~~~~~~~m~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~--- 205 (459)
T 3bhg_A 129 INNLAYALMIKQAIAQVIQPTIAEIMGSITLLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAEVL--- 205 (459)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCEeeccccCccceechHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 579999999999999 6999999999999999999999999999999999999999999999999999999999887
Q ss_pred cccCCCccccCCC------CcC------cchHHHHHhcCCCCCCCCchh-hhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy3416 80 NISPLGSAALAGT------THH------INRYLTAKLLDFEKPSENSLD-SISDRDFVIEFISTCCLIVMHLSRISEEFI 146 (455)
Q Consensus 80 ~~~~lGga~~~G~------~~~------~~~~~~a~~LG~~~~~~n~~~-~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~ 146 (455)
..+.+|| ++ || .+| ++ +.+++.|||..+ +++ ++.+||++++++++++.++++++|||+|++
T Consensus 206 ~~~~~~G-Av-GT~~a~~~~~~~~~~~~~~-~~~~~~LGl~~~---~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~ 279 (459)
T 3bhg_A 206 IPAKFNG-AV-GNYNAHVAAYPEVDWRKHC-ANFVTSLGLSFN---AYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIW 279 (459)
T ss_dssp CEECCCC-SS-SSCHHHHHHCTTSCHHHHH-HHHHHHTTCEEC---SSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Hhhcccc-cc-ccccccccccCcccHHHHH-HHHHHHhCCCCC---ccccchhcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3434444 44 66 122 44 456666999854 345 688999999999999999999998888888
Q ss_pred hhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHH
Q psy3416 147 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFIS 226 (455)
Q Consensus 147 ~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~ 226 (455)
+|++.|+.+
T Consensus 280 ll~s~~~~~----------------------------------------------------------------------- 288 (459)
T 3bhg_A 280 SYISLGYFK----------------------------------------------------------------------- 288 (459)
T ss_dssp HHHHTTSEE-----------------------------------------------------------------------
T ss_pred HHhCCccee-----------------------------------------------------------------------
Confidence 888765522
Q ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccc
Q psy3416 227 TCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKD 306 (455)
Q Consensus 227 ~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d 306 (455)
++++.+++|||+|||||||+.+|.++++++.+.+....++..+ .+++||||
T Consensus 289 ---------------------------e~~~~~~~GSSiMP~K~NP~~~e~~~g~~~l~~~~~~~~~~~l--~~~~~~rd 339 (459)
T 3bhg_A 289 ---------------------------QKTIAEEVGSSTMPHKVNPIDFENAEGNLGLSNALFIHFANKL--TQSRMQRD 339 (459)
T ss_dssp ---------------------------ECC------CCSSCCCCCTHHHHHHHHHHHHHHHHHHHHHHHT--TCCSTTCC
T ss_pred ---------------------------hccCCCCCCCCCCCCCcChHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccc
Confidence 2233356667777777777777777777777766665554432 24799999
Q ss_pred cccccc--hHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHH-HHHHHcCCChhHHHHHHHHHHHHHHH
Q psy3416 307 LQEDKL--PLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVA-DYLVKKGVPFRTSHEIVGSIIKYCNE 383 (455)
Q Consensus 307 ~~~~~~--~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la-~~L~~~g~~~r~Ah~~v~~~~~~a~~ 383 (455)
+++++. .++++++.+..+++.+..++++|+||+++|++|+..++.++++.+ ..|+++|++ +||++|+++++....
T Consensus 340 l~~s~~~r~l~~~~~~~~~~l~~~~~~l~gl~vn~e~m~~~l~~~~~~~te~~~~~L~~~G~~--~A~~iv~~~~~~~~~ 417 (459)
T 3bhg_A 340 LSDSTVLRNLGVAFSYSLIAYHSVAKGNDKLQINKSALQKDLSENWEVLAEAIQTVMRRYNEP--NAYEQLKELTRGQMI 417 (459)
T ss_dssp THHHHHHTTHHHHHHHHHHHHHHHHHHHTTEEECHHHHHHHHHTCGGGGHHHHHHHHHHTTCT--THHHHHHHHHTTSCC
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHHCcCEECHHHHHHHHHcCCchHHHHHHHHHHHhChH--HHHHHHHHHHhhccc
Confidence 988754 589999999999999999999999999999999977665545554 566676776 999999999982212
Q ss_pred cCCCchhhhHHHHhhhhcCCchHHHHhcChhhhhhhhccCCCCcHHHHHHH
Q psy3416 384 KHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIGGTSPEQVKIT 434 (455)
Q Consensus 384 ~g~~~~e~~~~~~~~~~~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~ 434 (455)
++.++.+++.+. + +.+.+.+++. .+||. .|+|.++++++++
T Consensus 418 ~~~~l~~~l~~l-~-~~~~~~~~l~-~~dp~-------~y~g~a~~~~~~~ 458 (459)
T 3bhg_A 418 DAENLKKFIKTL-S-IPEEAKAELM-KLTPE-------TYTGLATQLVKAF 458 (459)
T ss_dssp CHHHHHHHHHTS-C-SCHHHHHHHH-HCCGG-------GCCTTHHHHHHHC
T ss_pred ccccHHHHHHhc-C-CCchhHHHHH-hCCHH-------HHhCcHHHHHHhc
Confidence 223455554330 0 0111224566 89998 5999999999863
No 26
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=100.00 E-value=2e-50 Score=410.34 Aligned_cols=238 Identities=20% Similarity=0.180 Sum_probs=201.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|+++|||||||+|||+||||||++++|+++|.|+++||.+++++++
T Consensus 111 v~~Ta~~l~lr~~l~~l~~~L~~l~~~L~~~A~~~~~~~~~GrTHlQ~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 190 (359)
T 2fel_A 111 VIDTSLMLRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAIGITVADRAAGWIAPLERHLLRLETFAQNGF 190 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcEeeccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcC----cchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee
Q psy3416 81 ISPLGSAALAGTTHH----INRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 156 (455)
Q Consensus 81 ~~~lGga~~~G~~~~----~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el 156 (455)
.+|+||+++++..++ .+++++++.|||+.+. +|+++||+++|+.++++.++++++|||+|+++|+++| +|+
T Consensus 191 ~~~lGgavGT~~~~~~~~~~~~~~~a~~LG~~~~~----~~~~~RD~~~e~~~~l~~~a~~L~kia~Dirll~s~e-~Ei 265 (359)
T 2fel_A 191 ALQFGGAAGTLEKLGDNAGAVRADLAKRLGLADRP----QWHNQRDGIAEFANLLSLVTGTLGKFGQDIALMAEIG-SEI 265 (359)
T ss_dssp BCCCCCTTSSCTTTGGGHHHHHHHHHHHHTCBCCC----CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TTE
T ss_pred hcCCcHHhccCccCcchHHHHHHHHHHHhCcCCCc----hHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-Cee
Confidence 999999987766654 6788999999999875 5899999999999999999999999999998888877 776
Q ss_pred cccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q psy3416 157 TLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLS 236 (455)
Q Consensus 157 ~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~ 236 (455)
.+|
T Consensus 266 ~~~----------------------------------------------------------------------------- 268 (359)
T 2fel_A 266 RLS----------------------------------------------------------------------------- 268 (359)
T ss_dssp EEC-----------------------------------------------------------------------------
T ss_pred cCC-----------------------------------------------------------------------------
Confidence 443
Q ss_pred HHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccc---ccccch
Q psy3416 237 RISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL---QEDKLP 313 (455)
Q Consensus 237 ~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~ 313 (455)
+.+|||+|||||||+.+|.++++++++.|...+.+.++ +.+++||+ +.+|..
T Consensus 269 ----------------------~~~GSS~MP~K~NP~~~E~i~~~a~~v~~~~~~~~~~~---~~~~er~~~~~~~e~~~ 323 (359)
T 2fel_A 269 ----------------------GGGGSSAMPHKQNPVNAETLVTLARFNAVQISALHQSL---VQEQERSGAGWMLEWLT 323 (359)
T ss_dssp ----------------------------------CCHHHHHHHHHHHHHHHHHHHHHHTT---CCCSSBCHHHHHHHHHH
T ss_pred ----------------------CCCCCccCCcccCCHHHHHHHHHHHHHHHHHHHHHHHh---hccCCCCCcccHHHHHH
Confidence 23677778888888888888888889988888877654 56778884 567889
Q ss_pred HhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHH
Q psy3416 314 LFDTVDNIIMCLVASGKLIEKATFNEQEMYET 345 (455)
Q Consensus 314 l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~ 345 (455)
+|+++..++.+|..+..++++|+||+++|..+
T Consensus 324 lp~~~~~~~~~L~~~~~v~~~l~v~~~~m~~~ 355 (359)
T 2fel_A 324 LPQMVTATGTSLLVAERLAAQIDRLGADESHH 355 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHEEEECC-----
T ss_pred HHHHHHHHHHHHHHHHHHHccCEECHHHhCcc
Confidence 99999999999999999999999999999864
No 27
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase; 2.44A {Escherichia coli} SCOP: a.127.1.1
Probab=99.04 E-value=2.4e-10 Score=119.30 Aligned_cols=32 Identities=44% Similarity=0.680 Sum_probs=27.2
Q ss_pred eecccCCCCccccccCCCCCcchHHHHHHHHh
Q psy3416 155 FLTLPESFLTGSSIMPQKKNPDVKDLRQRAAL 186 (455)
Q Consensus 155 el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~ 186 (455)
|+++|+.+.+|||+||||+||+.+|.+.+.+.
T Consensus 266 ~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~ 297 (457)
T 1tj7_A 266 FVELSDRVTSGSSLMPQKKNPDALELIRGKCG 297 (457)
T ss_dssp CEECCGGGCBCCTTCTTCCBCHHHHHHHHTHH
T ss_pred ceeccCCCCCCCCCCCCCCCcHHHHHHHHHHH
Confidence 45678888899999999999999999875553
No 28
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A {Thermus thermophilus}
Probab=99.00 E-value=2.6e-10 Score=119.23 Aligned_cols=32 Identities=56% Similarity=0.896 Sum_probs=27.1
Q ss_pred eecccCCCCccccccCCCCCcchHHHHHHHHh
Q psy3416 155 FLTLPESFLTGSSIMPQKKNPDVKDLRQRAAL 186 (455)
Q Consensus 155 el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~ 186 (455)
|+++|+.+.+|||+||||+||+.+|.+.+.+.
T Consensus 269 ~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~ 300 (462)
T 2e9f_A 269 FVEVPDAFATGSSIMPQKKNPDILELIRAKAG 300 (462)
T ss_dssp CEECCGGGCEECSSSSSCEECHHHHHHHHTHH
T ss_pred cEEecCCCCCCCCCCCCCcCCHHHHHHHHHHH
Confidence 45678888899999999999999999875543
No 29
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase, enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos} SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A* 1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A 1k62_A
Probab=98.99 E-value=2.7e-10 Score=119.36 Aligned_cols=32 Identities=56% Similarity=0.823 Sum_probs=27.3
Q ss_pred eecccCCCCccccccCCCCCcchHHHHHHHHh
Q psy3416 155 FLTLPESFLTGSSIMPQKKNPDVKDLRQRAAL 186 (455)
Q Consensus 155 el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~ 186 (455)
|+++|+.+.+|||+||||+||+.+|.+.+.+.
T Consensus 272 ~iel~e~~~~GSSiMP~K~NP~~~E~i~~~a~ 303 (468)
T 1k7w_A 272 FLTLSDAFSTGASLMPQKKNPDSLELIRSKAG 303 (468)
T ss_dssp CEECCGGGCEEETTEEEEEECHHHHHHHHHHH
T ss_pred ceeccCCCCCCCCCCCCCCCcHHHHHHHHHHH
Confidence 45688888899999999999999999876554
No 30
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP: a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A* 2fus_A* 3tv2_A
Probab=98.89 E-value=3.8e-09 Score=110.53 Aligned_cols=162 Identities=11% Similarity=0.077 Sum_probs=114.3
Q ss_pred ccccccCccccchHHHHHHHHHHH-HHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhh
Q psy3416 41 PGFTHFQIAQPISLGHYLLAYASM-FQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSIS 119 (455)
Q Consensus 41 ~grTh~Q~A~P~T~G~~la~~~~~-L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~ 119 (455)
.|+| .||..||.+-.++...... |...+.+|.+.+..... .+...++.|.++..+. .|. +++
T Consensus 136 ~g~S-snD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~~A~-~~~~~~~~GrTHlQ~A----------~P~--T~G--- 198 (467)
T 1fur_A 136 KSQS-SNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSR-AFADIVKIGRTNLQDA----------TPL--TLG--- 198 (467)
T ss_dssp TTCC-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE----------EEE--EHH---
T ss_pred cCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcEeeccccCccc----------eee--eHH---
Confidence 8999 9999999999999988887 99999998888877754 4555565566654431 111 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhH--
Q psy3416 120 DRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYL-- 197 (455)
Q Consensus 120 ~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~-- 197 (455)
.+++.+...+.-.+.|+..=...+ ..+. .|++++||++++++.+
T Consensus 199 -----~~~~~~~~~l~r~~~rL~~~~~~l-----~~~~------------------------lGgtAvGT~~~~~~~~~~ 244 (467)
T 1fur_A 199 -----QEISGWVAMLEHNLKHIEYSLPHV-----AELA------------------------LGGTAVGTGLNTHPEYAR 244 (467)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHHH-----TEEC------------------------TTCTTTSSCTTSCTTHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHH-----hhcC------------------------cCcchhcCCccCChhHHH
Confidence 122223333333333332211111 1111 1234558888888876
Q ss_pred -----HHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---cccc
Q psy3416 198 -----TAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ---FNFL 253 (455)
Q Consensus 198 -----~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~---~~~~ 253 (455)
++..|||+ .+..|+++++++||++++++++++.++.+|+|||+|+++|+|+| ++|+
T Consensus 245 ~v~~~la~~LGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~gei 309 (467)
T 1fur_A 245 RVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEI 309 (467)
T ss_dssp HHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCSE
T ss_pred HHHHHHHHHhCCCCccCCCHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccCceeE
Confidence 89999999 68899999999999999999999999999999999999999876 6653
No 31
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase; HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Probab=98.89 E-value=6.6e-09 Score=109.02 Aligned_cols=158 Identities=16% Similarity=0.182 Sum_probs=112.4
Q ss_pred ccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhh
Q psy3416 41 PGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISD 120 (455)
Q Consensus 41 ~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~ 120 (455)
.||| .||-.||.+..++......|...+.+|.+.+..... .+...++.|.++..+ ..|. +++
T Consensus 140 ~g~S-snDv~~Ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~-~~~~~~m~GrTHlQ~----------A~P~--T~G---- 201 (478)
T 1jsw_A 140 KCQS-TNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAV-EFQDILKMGRTQLQD----------AVPM--TLG---- 201 (478)
T ss_dssp CSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HGGGCEEECCGGGSC----------CCEE--EHH----
T ss_pred CCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCeeeccccCcc----------ceee--hHH----
Confidence 6999 999999999999998889999999998888877754 355566667765443 1121 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhH---
Q psy3416 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYL--- 197 (455)
Q Consensus 121 Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~--- 197 (455)
.+++.+...+.-.+.|+..=... +....+ |++++||++++++.+
T Consensus 202 ----~~~~~~~~~l~rd~~RL~~~~~~-----~~~~~l------------------------Gg~AvGT~~~~~~~~~~~ 248 (478)
T 1jsw_A 202 ----QEFRAFSILLKEEVKNIQRTAEL-----LLEVNL------------------------GATAIGTGLNTPKEYSPL 248 (478)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHH-----TTEECC------------------------SCCSSSSCSSCTTTHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHHH-----hccCCC------------------------CCccccCCccCCcchHHH
Confidence 12223333333333333221111 111111 233447777887766
Q ss_pred ----HHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3416 198 ----TAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 249 (455)
Q Consensus 198 ----~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~ 249 (455)
++..|||+ .+..|+++++++||++++++++++.++.+|+|||+|+++|+|+|
T Consensus 249 v~~~la~~LGl~~~~~~n~~da~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~p 305 (478)
T 1jsw_A 249 AVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGP 305 (478)
T ss_dssp HHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHcCCCCCcCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 89999999 78999999999999999999999999999999999999999874
No 32
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken structural genomics/proteomics in RSGI, structural genomics, lyase; 1.80A {Thermus thermophilus} SCOP: a.127.1.1
Probab=98.87 E-value=4.4e-09 Score=110.01 Aligned_cols=161 Identities=14% Similarity=0.137 Sum_probs=113.9
Q ss_pred ccccccCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhh
Q psy3416 41 PGFTHFQIAQPISLGHYLLAYAS-MFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSIS 119 (455)
Q Consensus 41 ~grTh~Q~A~P~T~G~~la~~~~-~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~ 119 (455)
.||| .||-.||.+..++..... .|...+.+|.+.+..... .+...++.|.++..+- .|. +++
T Consensus 136 ~g~S-snD~~~Ta~~L~lr~~l~~~l~~~l~~L~~~L~~~A~-~~~~~~~~GrTHlQ~A----------~P~--T~G--- 198 (466)
T 1vdk_A 136 RGQS-SNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQ-AFDQIVKVGRTHLMDA----------VPI--TLG--- 198 (466)
T ss_dssp TTCC-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE----------EEE--EHH---
T ss_pred CCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCeeeccccCccC----------Ccc--cHH---
Confidence 8999 999999999999998887 899999998888877755 4556666666654431 111 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhH--
Q psy3416 120 DRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYL-- 197 (455)
Q Consensus 120 ~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~-- 197 (455)
.+++.+...+.-.+.|+..= ...+..+.+ |++++||++++++.+
T Consensus 199 -----~~~~~~~~~l~r~~~RL~~~-----~~~~~~~~l------------------------Gg~AvGT~~~~~~~~~~ 244 (466)
T 1vdk_A 199 -----QEIGSWAAQLKTTLAAVKEM-----EKGLYNLAI------------------------GGTAVGTGLNAHPRFGE 244 (466)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHH-----HGGGGEECT------------------------TCTTTSSCTTSCTTHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHH-----HHHHhhcCC------------------------CccccCCCccCCchHHH
Confidence 12222333333333333221 112222211 233458888887765
Q ss_pred -----HHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---ccc
Q psy3416 198 -----TAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ---FNF 252 (455)
Q Consensus 198 -----~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~---~~~ 252 (455)
++..|||+ .+..|+++++++||++++++++++.++.+|+|||+|+++|+|+| ++|
T Consensus 245 ~v~~~la~~LG~~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~S~~r~~~ge 308 (466)
T 1vdk_A 245 LVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGE 308 (466)
T ss_dssp HHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCS
T ss_pred HHHHHHHHHcCCCCCCCcchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcee
Confidence 68999999 58999999999999999999999999999999999999999876 665
No 33
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase, subunit active site; 2.60A {Saccharomyces cerevisiae} SCOP: a.127.1.1
Probab=98.85 E-value=5.5e-09 Score=109.64 Aligned_cols=165 Identities=13% Similarity=0.169 Sum_probs=116.8
Q ss_pred cccccccccCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchh
Q psy3416 38 TIMPGFTHFQIAQPISLGHYLLAYAS-MFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLD 116 (455)
Q Consensus 38 tvm~grTh~Q~A~P~T~G~~la~~~~-~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~ 116 (455)
-|..|+| .||..||.+-.++..... .|...+.+|.+.+..... .+...++.|.++-.+. .|. +++
T Consensus 158 ~Vn~g~S-sNDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~~A~-e~~~~v~~GrTHlQ~A----------~Pi--T~G 223 (488)
T 1yfm_A 158 HCNQSQS-SNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSK-EFDHIVKIGRTHLQDA----------TPL--TLG 223 (488)
T ss_dssp CCTTTCC-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE----------EEE--EHH
T ss_pred CcCCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcEeeceecCccc----------eEe--eHH
Confidence 3448999 999999999999998887 899999999888877755 4556666676654431 111 111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhh
Q psy3416 117 SISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRY 196 (455)
Q Consensus 117 ~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~ 196 (455)
.++..+...+.-.+.|+..=...+ .++. .|++++||++++++.
T Consensus 224 --------~~~~~~~~~l~rd~~RL~~~~~~l-----~~~~------------------------lGgtAvGT~~~~~~~ 266 (488)
T 1yfm_A 224 --------QEFSGYVQQVENGIQRVAHSLKTL-----SFLA------------------------QGGTAVGTGLNTKPG 266 (488)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHHHH-----TEEC------------------------TTCTTTSSCTTSCTT
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHH-----hhcC------------------------CCCccccCCccCChh
Confidence 122333333333333332221111 1111 124455888888876
Q ss_pred H-------HHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc---cccc
Q psy3416 197 L-------TAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ---FNFL 253 (455)
Q Consensus 197 ~-------~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~---~~~~ 253 (455)
+ ++..|||+ .+.+|+++++++||++++++++++.++.+|+|||+|+++|+|+| ++|+
T Consensus 267 ~~~~v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsS~pr~g~gei 334 (488)
T 1yfm_A 267 FDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHEL 334 (488)
T ss_dssp HHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSSCCCE
T ss_pred HHHHHHHHHHHHhCCCCccCccHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCceeE
Confidence 5 68999999 57999999999999999999999999999999999999999886 7665
No 34
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} SCOP: a.127.1.1 PDB: 1j3u_A 3r6v_A 3r6y_A
Probab=98.82 E-value=1e-08 Score=107.09 Aligned_cols=158 Identities=15% Similarity=0.143 Sum_probs=111.3
Q ss_pred ccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhh
Q psy3416 41 PGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISD 120 (455)
Q Consensus 41 ~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~ 120 (455)
.|+| .||..||.+-.++......|...+.+|.+.+..... .+...++.|.++..+. .|. +++
T Consensus 137 ~g~S-snDv~~Ta~~L~~r~~l~~l~~~L~~L~~~L~~~A~-~~~~~v~~GrTHlQ~A----------~Pi--T~G---- 198 (468)
T 3r6q_A 137 MSQS-TNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKAD-EFAGVIKMGRTHLQDA----------VPI--LLG---- 198 (468)
T ss_dssp TTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE----------EEE--EHH----
T ss_pred CCCC-hHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCcEEecCcCCccc----------eec--cHH----
Confidence 4999 999999999999998888999999999888877754 4556666666654431 111 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhH---
Q psy3416 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYL--- 197 (455)
Q Consensus 121 Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~--- 197 (455)
.+++.+...+.-.+.|+..-.. .+.++. .|++++||++++++.+
T Consensus 199 ----~~~~~~~~~l~rd~~RL~~~~~-----~l~~~~------------------------lGgtAvGT~~~~~~~~~~~ 245 (468)
T 3r6q_A 199 ----QEFEAYARVIARDIERIANTRN-----NLYDIN------------------------MGATAVGTGLNADPEYISI 245 (468)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHTHH-----HHTEEC------------------------TTCTTTSSCTTCCHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHH-----HHhhcC------------------------CCCeecCCCCCCChHHHHH
Confidence 1222233333333333321111 111111 1234568888888776
Q ss_pred ----HHhhhcCCC-CCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3416 198 ----TAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 249 (455)
Q Consensus 198 ----~a~~l~~~~-~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~ 249 (455)
++..|||+. +..|+++++++||++++++++++.++.+|+|||+|+++|+|+|
T Consensus 246 v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~l~~la~~L~Kia~DlrllsS~p 302 (468)
T 3r6q_A 246 VTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGP 302 (468)
T ss_dssp HHHHHHHHHCSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCBS
T ss_pred HHHHHHHHhCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 588899995 6889999999999999999999999999999999999999976
No 35
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A {Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Probab=98.81 E-value=2e-08 Score=104.06 Aligned_cols=186 Identities=12% Similarity=0.202 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHH
Q psy3416 21 LLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYL 100 (455)
Q Consensus 21 l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~ 100 (455)
+..+...|.++..+....++.|+| .||-.||.+..++......|...+.+|.+.+..... .+...++.|.++..+-
T Consensus 69 Via~~~~l~e~~g~~g~~vH~g~S-snD~~~Ta~~l~lr~~~~~l~~~l~~l~~~L~~~A~-~~~~~~~~GrTHlQ~A-- 144 (429)
T 1c3c_A 69 VVAFVEGIGSMIGEDSRFFHYGLT-SSDVLDTANSLALVEAGKILLESLKEFCDVLWEVAN-RYKHTPTIGRTHGVHA-- 144 (429)
T ss_dssp HHHHHHHHHHHHGGGGGGTTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE--
T ss_pred hHHHHHHHHHHcCcccccccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCeeecCcCCCcC--
Confidence 445555555555455677999999 999999999999998888999999999888877765 4556666666654431
Q ss_pred HHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHH
Q psy3416 101 TAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL 180 (455)
Q Consensus 101 ~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~ 180 (455)
.|. +++ .+++.+...+.-.+.|+..=... +....+.
T Consensus 145 --------~P~--T~G--------~~~~~~~~~l~r~~~rL~~~~~~-----~~~~~lG--------------------- 180 (429)
T 1c3c_A 145 --------EPT--SFG--------LKVLGWYSEMKRNVQRLERAIEE-----VSYGKIS--------------------- 180 (429)
T ss_dssp --------EEE--EHH--------HHHHHHHHHHHHHHHHHHHHHHH-----TCEECCC---------------------
T ss_pred --------cCC--cHH--------HHHHHHHHHHHHHHHHHHHHHHH-----hccCCCc---------------------
Confidence 111 111 12222333333333333221111 2222111
Q ss_pred HHHHHhhcccccchh---hHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q psy3416 181 RQRAALAGTTHHINR---YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 257 (455)
Q Consensus 181 ~~~~~~~gt~~~~~~---~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~ 257 (455)
+.+||+.++++ .+++..|||+.+..| +++.+||++++++++++.++.+|+|||+|+++|++.+++ ++.+
T Consensus 181 ----gAvGt~~~~~~~~~~~~a~~LGl~~~~~~--d~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~~~e~~--El~~ 252 (429)
T 1c3c_A 181 ----GAVGNYANVPPEVEEKALSYLGLKPEPVS--TQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVL--EVEE 252 (429)
T ss_dssp ----CTTSSCSSSCHHHHHHHHHHTTCEECSSC--SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTC--SEEC
T ss_pred ----hhhcCCccCCHHHHHHHHHHcCCCCCCCC--cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--hhcc
Confidence 13455555444 678899999977666 677799999999999999999999999999999998887 6677
Q ss_pred ccccc
Q psy3416 258 SFLTG 262 (455)
Q Consensus 258 ~~~~~ 262 (455)
++..+
T Consensus 253 p~~~~ 257 (429)
T 1c3c_A 253 PFRKG 257 (429)
T ss_dssp CCCC-
T ss_pred ccccC
Confidence 55444
No 36
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: AMP; 1.92A {Francisella tularensis subsp}
Probab=98.81 E-value=1.4e-08 Score=105.32 Aligned_cols=188 Identities=16% Similarity=0.142 Sum_probs=125.1
Q ss_pred HHHHHHHHHHHHHHHHh-cCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcc
Q psy3416 19 ELLLTMIKHLTDLSDKH-AKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHIN 97 (455)
Q Consensus 19 ~~l~~l~~~L~~~A~~~-~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~ 97 (455)
.++..+.+.|.++..+. ...++.|+| .||..||.+..++......|...+.+|.+.+..... .+...++.|.++..+
T Consensus 67 hdV~a~~~~l~e~~g~~~~~~iH~G~S-snDv~~Ta~~L~lr~~~~~l~~~L~~l~~~L~~~A~-~~~~~~m~GrTHlQ~ 144 (438)
T 4eei_A 67 HDIIAFCTSIAEQFTAETGKFFHFGVT-SSDIIDSALSLQIRDSMSYVIKDLEALCDSLLTKAE-ETKEIITMGRSHGMF 144 (438)
T ss_dssp CHHHHHHHHHHTTSCTTTTTTTTCSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTCEEEEEETTEE
T ss_pred CCHHHHHHHHHHHcCHHhhcccCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCCcccccccCcc
Confidence 35667777777777555 888999999 999999999999998888899999988887776654 344555556555443
Q ss_pred hHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcch
Q psy3416 98 RYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDV 177 (455)
Q Consensus 98 ~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~ 177 (455)
- .|. +++ .+++.+...+.-.+.++..-.. .+....+
T Consensus 145 A----------~P~--T~G--------~~~~~~~~~l~r~~~rL~~~~~-----~~~~~~l------------------- 180 (438)
T 4eei_A 145 A----------EPM--SFG--------QKFLGAYVEFKRRLKDLKDFQK-----DGLTVQF------------------- 180 (438)
T ss_dssp E----------EEE--ETH--------HHHHHHHHHHHHHHHHHHHHHH-----TTCCBCC-------------------
T ss_pred C----------Cch--hHH--------HHHHHHHHHHHHHHHHHHHHHH-----HHhHhcC-------------------
Confidence 1 111 111 1222233333333333321111 1111111
Q ss_pred HHHHHHHHhhcccccchh---hHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccc
Q psy3416 178 KDLRQRAALAGTTHHINR---YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLT 254 (455)
Q Consensus 178 ~e~~~~~~~~gt~~~~~~---~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~ 254 (455)
+ +++||+.++++ .+++..|||+. ..++ .++++||++++++++++.++.+|+|||+|+++|++.++++
T Consensus 181 -----g-GAvGT~~~~~~~~~~~~a~~LG~~~-~~~~-~~v~~rD~~~e~~~~l~~~a~~L~kia~Di~ll~~~e~ge-- 250 (438)
T 4eei_A 181 -----S-GAVGNYCILTTEDEKKAADILGLPV-EEVS-TQVIPRDRIAKLISIHGLIASAIERLAVEIRHLHRSDVFE-- 250 (438)
T ss_dssp -----C-CTTSCCSSSCHHHHHHHHHHHTCCB-CSSC-SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTCS--
T ss_pred -----c-cHhhCcccccHHHHHHHHHHcCCCC-CCcc-ccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccce--
Confidence 1 23577777776 66888999974 3455 6889999999999999999999999999999999988874
Q ss_pred cccccccc
Q psy3416 255 LPESFLTG 262 (455)
Q Consensus 255 lp~~~~~~ 262 (455)
+.++|..+
T Consensus 251 l~~~f~~~ 258 (438)
T 4eei_A 251 VYEGFSKG 258 (438)
T ss_dssp EECCC---
T ss_pred eccccccC
Confidence 45655443
No 37
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase class II cycloisomerase, molecular EV isomerase; HET: CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Probab=98.79 E-value=4.8e-08 Score=101.85 Aligned_cols=183 Identities=19% Similarity=0.246 Sum_probs=123.0
Q ss_pred HHHHHHHHHHH---Hh-cCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcch
Q psy3416 23 TMIKHLTDLSD---KH-AKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINR 98 (455)
Q Consensus 23 ~l~~~L~~~A~---~~-~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~ 98 (455)
.+...|.++.. +. .+.+..|+| .||..||.+..++......|...+.+|.+.+..... .+...++.|.++..+-
T Consensus 80 a~~~~l~e~~g~~~~~~~~~vh~g~S-snD~~~Ta~~l~lr~~l~~l~~~l~~L~~~L~~~A~-~~~~~~~~GrTHlQ~A 157 (450)
T 1re5_A 80 PLVKALGKVIATGVPEAERYVHLGAT-SQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQAL-KHADTPLVGRTWLQHA 157 (450)
T ss_dssp HHHHHHHHHHHHHCGGGGGGTTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE
T ss_pred HHHHHHHHHhCCCCCcccccccCCCC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCeeeccccCccC
Confidence 44444444443 33 678999999 999999999999998888999999999888877754 4555666666654431
Q ss_pred HHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchH
Q psy3416 99 YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVK 178 (455)
Q Consensus 99 ~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~ 178 (455)
.|. +++ .+++.+...+.-.+.|+..=...+. +..+
T Consensus 158 ----------~P~--T~G--------~~~~~~~~~l~r~~~rL~~~~~~~~-----~~~l-------------------- 192 (450)
T 1re5_A 158 ----------TPV--TLG--------MKLAGVLGALTRHRQRLQELRPRLL-----VLQF-------------------- 192 (450)
T ss_dssp ----------EEE--EHH--------HHHHHHHHHHHHHHHHHHHHHHHHS-----BCCC--------------------
T ss_pred ----------ccC--cHH--------HHHHHHHHHHHHHHHHHHHHHHhhh-----hcCC--------------------
Confidence 111 111 1222233333333333322221111 1111
Q ss_pred HHHHHHHhhcccccchh------hHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Q psy3416 179 DLRQRAALAGTTHHINR------YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNF 252 (455)
Q Consensus 179 e~~~~~~~~gt~~~~~~------~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~ 252 (455)
| +++||+.++++ .+++..|||+.+..+ ++++||++++++++++.++.+|+|||+|+++|++.+++
T Consensus 193 ----G-GAvGt~~~~~~~~~~~~~~la~~LG~~~~~~~---~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~~- 263 (450)
T 1re5_A 193 ----G-GASGSLAALGSKAMPVAEALAEQLKLTLPEQP---WHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAG- 263 (450)
T ss_dssp ----C-CTTSSCGGGGGGHHHHHHHHHHHHTCBCCSSC---CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTC-
T ss_pred ----c-chhcCCcccCcchHHHHHHHHHHhCcCCCCcc---cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcc-
Confidence 1 23566666666 788999999987654 78999999999999999999999999999999998887
Q ss_pred cccccccccc
Q psy3416 253 LTLPESFLTG 262 (455)
Q Consensus 253 ~~lp~~~~~~ 262 (455)
++.+++..+
T Consensus 264 -El~~p~~~~ 272 (450)
T 1re5_A 264 -EVFEPSAPG 272 (450)
T ss_dssp -CEECCCCC-
T ss_pred -eeecccccC
Confidence 566655444
No 38
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure initiative, southeast collaboratory for structura genomics, secsg; 2.40A {Caenorhabditis elegans}
Probab=98.77 E-value=3.3e-08 Score=103.81 Aligned_cols=188 Identities=14% Similarity=0.052 Sum_probs=124.3
Q ss_pred HHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcch
Q psy3416 19 ELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINR 98 (455)
Q Consensus 19 ~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~ 98 (455)
.++..+++.|.++..+....++.||| .|+-++++...++..-...|...+.+|.+.+..... .+...++.|.++..+-
T Consensus 82 ~DV~a~v~~l~e~~g~~~~~iH~G~T-S~Di~~ta~~L~lr~~l~~l~~~L~~L~~~L~~~A~-~~~~~~m~GrTHlQ~A 159 (478)
T 1yis_A 82 HDVMAHNHAFGKLCPTAAGIIHLGAT-SCFVQDNADLIAYRDSIDHILKRFATVIDRLAAFSL-KNKEVVTVGRTHYQTA 159 (478)
T ss_dssp CHHHHHHHHHHHHCTTTGGGTTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE
T ss_pred CcHHHHHHHHHHhhhhchhheeCCCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HcCCCeeecccCCccc
Confidence 35666666777776677888999999 999999999999998888999999998888877755 4555666666654431
Q ss_pred HHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchH
Q psy3416 99 YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVK 178 (455)
Q Consensus 99 ~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~ 178 (455)
.|. +++ .+++.+...+.-.+.|+..=...+ ..+ +-
T Consensus 160 ----------~P~--T~G--------~~~~~~~~~l~rd~~rL~~~~~~l-----~~l--g~------------------ 194 (478)
T 1yis_A 160 ----------SLV--TVG--------KRGVLWAQELLMAFQSLSEFRDKM-----RFR--GI------------------ 194 (478)
T ss_dssp ----------EEE--EHH--------HHHHHHHHHHHHHHHHHHHHHHHC-----CBC--CS------------------
T ss_pred ----------eec--cHH--------HHHHHHHHHHHHHHHHHHHHHHHH-----HHh--cc------------------
Confidence 111 111 122223333333333332211111 111 10
Q ss_pred HHHHHHHhhccc------ccchh-------hHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy3416 179 DLRQRAALAGTT------HHINR-------YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIF 245 (455)
Q Consensus 179 e~~~~~~~~gt~------~~~~~-------~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~ 245 (455)
++.+||+ ++.++ .+++..|||+.+..|+. ++++||+.++++++++.++.+|+|||+|+++|
T Consensus 195 -----gg~~GT~a~~~~~f~~d~~~~~~v~~~~a~~LG~~~~~~~s~-~~~~rd~~~e~~~~l~~~a~~L~kia~Di~ll 268 (478)
T 1yis_A 195 -----KGATGTQDSFLTLFAGDESKVEALDELVTKKANFSNRFLITG-QTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVL 268 (478)
T ss_dssp -----CTTTSSCHHHHHHTTTCHHHHHHHHHHHHHHTTCSCBCSSCS-SSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cchhccchhhhcccCcchhhHHHHHHHHHHHhCcCCCCCccc-cccCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1224554 43333 67899999998888886 89999999999999999999999999999999
Q ss_pred hccccccccccccccccC
Q psy3416 246 MNPQFNFLTLPESFLTGS 263 (455)
Q Consensus 246 ~s~~~~~~~lp~~~~~~S 263 (455)
+| +.++.+++..+.
T Consensus 269 ~s----~~el~~p~~~~q 282 (478)
T 1yis_A 269 QA----FGELLEPFEKDQ 282 (478)
T ss_dssp HH----TTSEECC-----
T ss_pred hh----hhheeccccCCC
Confidence 98 345666555443
No 39
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis; 2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Probab=98.73 E-value=2.9e-08 Score=103.23 Aligned_cols=186 Identities=15% Similarity=0.200 Sum_probs=122.5
Q ss_pred HHHHHHHHHHH--HHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchH
Q psy3416 22 LTMIKHLTDLS--DKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY 99 (455)
Q Consensus 22 ~~l~~~L~~~A--~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~ 99 (455)
..+...|.++. .+....++.|+| .||..||.+..++......|...+.+|.+.+..... .+...++.|.++..+-
T Consensus 80 ia~~~~l~e~~g~g~~g~~vH~g~S-snDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~-~~~~~~~~GrTHlQ~A- 156 (444)
T 2pfm_A 80 VAFTRAVSETPALGEERKWVHYGLT-STDVVDTALSYILKQANEIILKDLENFVSILANKAK-EHKYTIMMGRTHGVHA- 156 (444)
T ss_dssp HHHHHHHHTCTTCCGGGGGTTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE-
T ss_pred HHHHHHHHHHcCCCcccccccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCeeecccCCccc-
Confidence 34444444444 333456899999 999999999999998888999999998888877754 4555565566654431
Q ss_pred HHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHH
Q psy3416 100 LTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKD 179 (455)
Q Consensus 100 ~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e 179 (455)
.|. +++ .++..+...+.-.+.|+..=... +....+.
T Consensus 157 ---------~P~--T~G--------~~~~~~~~~l~r~~~rL~~~~~~-----~~~~~lG-------------------- 192 (444)
T 2pfm_A 157 ---------EPT--TFG--------LKLGLWYEEMKRNVERFKQAANT-----VRVGKLS-------------------- 192 (444)
T ss_dssp ---------EEE--EHH--------HHHHHHHHHHHHHHHHHHHHHHH-----TCEECCC--------------------
T ss_pred ---------eec--cHH--------HHHHHHHHHHHHHHHHHHHHHHH-----hcccCCc--------------------
Confidence 111 111 12222333333333333221111 2222111
Q ss_pred HHHHHHhhcccccchh---hHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q psy3416 180 LRQRAALAGTTHHINR---YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP 256 (455)
Q Consensus 180 ~~~~~~~~gt~~~~~~---~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp 256 (455)
+.+||+.++++ .+++..|||+.+..+ +++.+||++++++++++.++.+|+|||+|+++|++.+++ +++
T Consensus 193 -----gAvGt~~~~~~~~~~~~a~~LGl~~~~~~--d~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~g--El~ 263 (444)
T 2pfm_A 193 -----GAVGTYANIDPFVEKYVCENLGLEAAPIS--TQTLQRDRHAHYMSTLALIATSIEKMAVEIRGLQKSETR--EVE 263 (444)
T ss_dssp -----CTTSSCTTSCHHHHHHHHHHTTCEECSSC--SSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTC--SEE
T ss_pred -----hhhccCCcCCHHHHHHHHHHhCCCCCCCC--cCccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--ccc
Confidence 13455444444 678899999977666 677799999999999999999999999999999998877 677
Q ss_pred ccccccC
Q psy3416 257 ESFLTGS 263 (455)
Q Consensus 257 ~~~~~~S 263 (455)
+++..+.
T Consensus 264 ~p~~~~q 270 (444)
T 2pfm_A 264 EAFAKGQ 270 (444)
T ss_dssp CCCCTTC
T ss_pred cccccCC
Confidence 7555443
No 40
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB: 4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Probab=98.70 E-value=4.2e-08 Score=103.03 Aligned_cols=158 Identities=15% Similarity=0.146 Sum_probs=107.3
Q ss_pred ccccccCccccchHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhh
Q psy3416 41 PGFTHFQIAQPISLGHYLLAYA-SMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSIS 119 (455)
Q Consensus 41 ~grTh~Q~A~P~T~G~~la~~~-~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~ 119 (455)
.||| .||..||.+-.++..-. +.|...+.+|.+.+..... .+...++.|.++..+. .|. +++
T Consensus 157 ~g~S-sNDv~~Ta~~L~lr~~l~~~l~~~L~~L~~~L~~kA~-e~~d~v~~GrTHlQ~A----------~Pi--T~G--- 219 (495)
T 4adm_A 157 MSQS-SNDTFPTATHIAATEAAVAHLIPALQQLHDALAAKAL-DWHTVVKSGRTHLMDA----------VPV--TLG--- 219 (495)
T ss_dssp TTCC-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE----------EEE--EHH---
T ss_pred CCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCeeeccccCccc----------ccc--hHH---
Confidence 3899 99999999999998666 4688888888888777654 3555565566654431 111 111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhH--
Q psy3416 120 DRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYL-- 197 (455)
Q Consensus 120 ~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~-- 197 (455)
.++..+...+.-.+.|+..-... +.++.+ |++++||++++++.+
T Consensus 220 -----~~~~~~a~~l~rd~~RL~~~~~~-----l~~~~L------------------------GgtAvGT~~~~~~~~~~ 265 (495)
T 4adm_A 220 -----QEFSGYARQIEAGIERVRACLPR-----LGELAI------------------------GGTAVGTGLNAPDDFGV 265 (495)
T ss_dssp -----HHHHHHHHHHHHHHHHHHHHHHH-----HTEECT------------------------TCTTTSSCTTSCTTHHH
T ss_pred -----HHHHHHHHHHHHHHHHHHHHHHH-----HhcCCC------------------------CCeeecCCccCChhHHH
Confidence 12222333333333333221111 111111 233457777766654
Q ss_pred -----HHhhhcC--CCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3416 198 -----TAKLLDF--EKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 249 (455)
Q Consensus 198 -----~a~~l~~--~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~ 249 (455)
++..||| ..+..|+++++++||++++++++++.++.+|+|||+|+++|+|+|
T Consensus 266 ~v~~~la~~lG~~~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgp 324 (495)
T 4adm_A 266 RVVAVLVAQTGLSELRTAANSFEAQAARDGLVEASGALRTIAVSLTKIANDIRWMGSGP 324 (495)
T ss_dssp HHHHHHHHHHCCTTCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHHHhCCCCCccccchHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 7889999 478999999999999999999999999999999999999999965
No 41
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino AMP-lyase, purin biosynthesis, adenylosuccinase DEFI AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens} PDB: 2vd6_A*
Probab=98.69 E-value=8.5e-08 Score=101.16 Aligned_cols=188 Identities=14% Similarity=0.078 Sum_probs=123.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcc
Q psy3416 18 IELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHIN 97 (455)
Q Consensus 18 ~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~ 97 (455)
..++..+++.|.++..+....++.||| .|+-++++...++..-...|...+.+|.+.+..... .+...++.|.++..+
T Consensus 107 ~hDV~a~v~~l~e~~g~~~~~iH~G~T-S~Di~dta~~L~lr~al~~l~~~L~~L~~~L~~~A~-~~~~~~m~GrTHlQ~ 184 (503)
T 2j91_A 107 RHDVMAHVHTFGHCCPKAAGIIHLGAT-SCYVGDNTDLIILRNALDLLLPKLARVISRLADFAK-ERASLPTLGFTHFQP 184 (503)
T ss_dssp SCHHHHHHHHHHHHCTTTGGGTTTTCC-THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEE
T ss_pred CCcHHHHHHHHHHHhccccccccCCCC-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcEeeccccCcc
Confidence 345666666777776677888999999 999999999999998888999999998888877755 455666666665443
Q ss_pred hHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcch
Q psy3416 98 RYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDV 177 (455)
Q Consensus 98 ~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~ 177 (455)
. .|. +++ .+++.+...+.-.+.|+..=...+ ..+..
T Consensus 185 A----------~P~--T~G--------~~~~~~~~~l~rd~~RL~~~~~~l-----~~lg~------------------- 220 (503)
T 2j91_A 185 A----------QLT--TVG--------KRCCLWIQDLCMDLQNLKRVRDDL-----RFRGV------------------- 220 (503)
T ss_dssp E----------EEE--EHH--------HHHHHHHHHHHHHHHHHHHHHHHC-----CBCCS-------------------
T ss_pred c----------eec--chH--------HHHHHHHHHHHHHHHHHHHHHHhh-----ccccc-------------------
Confidence 1 111 111 122223333333333332211111 11101
Q ss_pred HHHHHHHHhhccc------ccchh-------hHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 178 KDLRQRAALAGTT------HHINR-------YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFII 244 (455)
Q Consensus 178 ~e~~~~~~~~gt~------~~~~~-------~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~ 244 (455)
++.+||+ ++.++ .+++..|||+.+..|+. ++++||+.++++++++.++.+|+|||+|+++
T Consensus 221 ------gG~~GT~a~~~~~f~~D~~~~~~v~~~~a~~LGl~~~~~~s~-~~~~rd~~~e~~~~la~la~~L~kia~Dirl 293 (503)
T 2j91_A 221 ------KGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKRAFIITG-QTYTRKVDIEVLSVLASLGASVHKICTDIRL 293 (503)
T ss_dssp ------CCTTSSCHHHHHHTTTCHHHHHHHHHHHHHHTTCSCBCSCCS-SSCCTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------cccccchhhhccccCCchHHHHHHHHHHHHHhCCCCCCCccc-ccccChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1123443 33322 67889999998878886 7999999999999999999999999999999
Q ss_pred hhcccccccccccccccc
Q psy3416 245 FMNPQFNFLTLPESFLTG 262 (455)
Q Consensus 245 ~~s~~~~~~~lp~~~~~~ 262 (455)
|+| ++++..| +..+
T Consensus 294 l~s--~~ei~ep--~~~~ 307 (503)
T 2j91_A 294 LAN--LKEMEEP--FEKQ 307 (503)
T ss_dssp HHH--HTSEECC--C---
T ss_pred Hhc--cceeecc--ccCC
Confidence 998 5554443 4444
No 42
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis, epididymiti mastitis, dehydration of fumarate to malate, KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Probab=98.69 E-value=3.5e-08 Score=103.16 Aligned_cols=158 Identities=18% Similarity=0.204 Sum_probs=103.4
Q ss_pred ccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhh
Q psy3416 41 PGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISD 120 (455)
Q Consensus 41 ~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~ 120 (455)
.|+| .||..||.+-.++......|...+.+|.+.+..... .+...++.|.++-.+. .|. +++
T Consensus 157 ~g~S-sNDv~~Ta~~L~~~~~l~~L~~~L~~L~~~L~~kA~-e~~d~v~~GRTHlQ~A----------~Pi--TlG---- 218 (478)
T 3ocf_A 157 MSQS-TNDVYPTAVRLALLLSQNQVQTALHRLIAAFEAKGR-EFATVIKIGRTQLQDA----------VPI--TLG---- 218 (478)
T ss_dssp TTCC-HHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE----------EEE--EHH----
T ss_pred CCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCcEeecccccccc----------eee--cHH----
Confidence 6999 999999999999998888999999998888877654 3555565566654431 111 111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhH---
Q psy3416 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYL--- 197 (455)
Q Consensus 121 Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~--- 197 (455)
.++..+...+.-.+.|+..-.. .+.++.+ |++++||++++++.+
T Consensus 219 ----~~~~~~a~~l~rd~~RL~~~~~-----~l~~~~l------------------------GgtAvGTg~~~~~~~~~~ 265 (478)
T 3ocf_A 219 ----QEFEAFAATLREDTARLEEVAA-----LFREVNL------------------------GGTAIGTRINASHAYAEQ 265 (478)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHH-----GGGEECT------------------------TC-----------CHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHHHHHH-----HHhHhCC------------------------CCeeeCCCcCCChhHHHH
Confidence 1223333333333333322111 1222211 234457777766643
Q ss_pred ----HHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3416 198 ----TAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 249 (455)
Q Consensus 198 ----~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~ 249 (455)
++..+||+ .+.+|+++++++||++++++++++.++.+|+|||+|+++|+|+|
T Consensus 266 v~~~la~~lGl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgp 322 (478)
T 3ocf_A 266 AIVELSQISGIELKATGNLVEASWDTGAFVTFSGILRRIAVKLSKIANDLRLLSSGP 322 (478)
T ss_dssp HHHHHHHHHTSCCEECSCHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBS
T ss_pred HHHHHHHhcCCCCccCCChhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 57889999 67899999999999999999999999999999999999999974
No 43
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A {Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Probab=98.68 E-value=2.4e-08 Score=104.38 Aligned_cols=29 Identities=28% Similarity=0.100 Sum_probs=24.1
Q ss_pred ccCCCCccccccCCCCCcchHHHHHHHHh
Q psy3416 158 LPESFLTGSSIMPQKKNPDVKDLRQRAAL 186 (455)
Q Consensus 158 ~~e~~~~gSStMP~K~NP~~~e~~~~~~~ 186 (455)
.++.+++|||+||||+||+.+|.+.+.+.
T Consensus 287 ~~~~~~~GSSiMP~K~NP~~~E~i~~~a~ 315 (462)
T 2ptr_A 287 KTIAGEIGSSTMPHKVNPIDFENSEGNLG 315 (462)
T ss_dssp CCCTTCCSCSSCTTCCCCHHHHHHHHHHH
T ss_pred cCCCCCCcCCCCCCCCCcHHHHHHHHHHH
Confidence 45567999999999999999998876553
No 44
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic degradation; 2.30A {Acinetobacter calcoaceticus} SCOP: a.127.1.1
Probab=98.66 E-value=1.7e-07 Score=97.74 Aligned_cols=190 Identities=15% Similarity=0.137 Sum_probs=119.8
Q ss_pred HHHHHHHHHHH----HHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcc
Q psy3416 22 LTMIKHLTDLS----DKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHIN 97 (455)
Q Consensus 22 ~~l~~~L~~~A----~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~ 97 (455)
..+...|.++. .+..+.++.|+| .||..||.+-.++......|...+.+|.+.+..... .+...++.|.++..+
T Consensus 83 ia~~~~l~e~~g~~~g~~~~~vH~g~S-snD~~~Ta~~L~~r~~l~~l~~~l~~L~~~L~~~A~-~~~~~~~~GrTHlQ~ 160 (454)
T 1q5n_A 83 IPFVKQLTAIVKDADEDAARYVHWGAT-SQDILDTACILQCRDALAIVQNQVQQCYETALSQAQ-TYRHQVMMGRTWLQQ 160 (454)
T ss_dssp HHHHHHHHHHHHTTCTTGGGGTTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEE
T ss_pred HHHHHHHHHHhccccCCccccccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCceeeccccCCc
Confidence 34444555555 344577999999 999999999999998888999999998888877754 455666666665443
Q ss_pred hHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcch
Q psy3416 98 RYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDV 177 (455)
Q Consensus 98 ~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~ 177 (455)
- .|. +++ .+++.+...+.-.+.|+..=...+ .++.+....+.|.+ .|. ..
T Consensus 161 A----------~P~--T~G--------~~~~~~~~~l~r~~~rL~~~~~~~-----~~~~lGgAvGT~~~-~~~-~~--- 210 (454)
T 1q5n_A 161 A----------LPI--TLG--------HKLARWASAFKRDLDRINAIKARV-----LVAQLGGAVGSLAS-LQD-QG--- 210 (454)
T ss_dssp E----------EEE--EHH--------HHHHHHHHHHHHHHHHHHHHHHHH-----SBCCCCCTTSSCGG-GTT-CH---
T ss_pred C----------ccc--HHH--------HHHHHHHHHHHHHHHHHHHHHHhh-----cccCCchHhhcCcc-ccc-cc---
Confidence 1 111 111 122223333333333333222111 11111111111222 111 11
Q ss_pred HHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q psy3416 178 KDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 257 (455)
Q Consensus 178 ~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~ 257 (455)
+..+.+++..|||+.+..+ ++.+||++++++++++.++.+|+|||+|+++|++.+++ ++++
T Consensus 211 --------------~~~~~~~a~~LG~~~~~~~---~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~g--El~~ 271 (454)
T 1q5n_A 211 --------------SIVVEAYAKQLKLGQTACT---WHGERDRIVEIASVLGIITGNVGKMARDWSLMMQTEIA--EVFE 271 (454)
T ss_dssp --------------HHHHHHHHHHHTCBCCSSC---CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTC--CEEC
T ss_pred --------------HHHHHHHHHHhCcCCCCCC---CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--hhcc
Confidence 2345678899999977665 35599999999999999999999999999999998887 6677
Q ss_pred ccccc
Q psy3416 258 SFLTG 262 (455)
Q Consensus 258 ~~~~~ 262 (455)
++..+
T Consensus 272 p~~~~ 276 (454)
T 1q5n_A 272 PTAKG 276 (454)
T ss_dssp CC---
T ss_pred ccccC
Confidence 55444
No 45
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics consortium, alterna initiation, anti-oncogene, cell cycle, disease mutation; 1.95A {Homo sapiens}
Probab=98.61 E-value=8.4e-08 Score=100.31 Aligned_cols=157 Identities=13% Similarity=0.140 Sum_probs=107.4
Q ss_pred cccccccCccccchHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhh
Q psy3416 40 MPGFTHFQIAQPISLGHYLLAYA-SMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSI 118 (455)
Q Consensus 40 m~grTh~Q~A~P~T~G~~la~~~-~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~ 118 (455)
..||| .+|..||.+-.++..-. +.|...+.+|.+.+..... .+...++.|.++-.+. .|. +++
T Consensus 162 n~gqS-sND~~~Ta~~l~~~~~~~~~L~~~L~~L~~aL~~kA~-e~~d~v~~GRTHlQ~A----------~Pi--TlG-- 225 (490)
T 3e04_A 162 NKSQS-SNDTFPTAMHIAAAIEVHEVLLPGLQKLHDALDAKSK-EFAQIIKIGRTHTQDA----------VPL--TLG-- 225 (490)
T ss_dssp TTTCC-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE----------EEE--EHH--
T ss_pred CCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhCceeeccccCccC----------CCC--cHH--
Confidence 33899 89999999988886444 5688888888777776654 3455555566554431 111 111
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhh
Q psy3416 119 SDRDFVIEFISTCCLIVMHLSRISEEFIIFM--NPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRY 196 (455)
Q Consensus 119 ~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~--~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~ 196 (455)
.++..+.. .+.+|+..+. .+.+.++.+ |++++||++++++.
T Consensus 226 ------~~~~~~a~-------~l~rd~~RL~~~~~~l~~~~l------------------------GgtAvGTg~~~~~~ 268 (490)
T 3e04_A 226 ------QEFSGYVQ-------QVKYAMTRIKAAMPRIYELAA------------------------GGTAVGTGLNTRIG 268 (490)
T ss_dssp ------HHHHHHHH-------HHHHHHHHHHHTCTTTSEECT------------------------TCTTTSSCTTSCTT
T ss_pred ------HHHHHHHH-------HHHHHHHHHHHHHHHHHHhCC------------------------CCccccCCCcCChh
Confidence 12222222 2333443332 223333322 23445777777765
Q ss_pred H-------HHhhhcCCC-CCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3416 197 L-------TAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 249 (455)
Q Consensus 197 ~-------~a~~l~~~~-~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~ 249 (455)
+ ++..+||+. +.+|+++++++||++++++++++.++.+|+|||+|+++|+|+|
T Consensus 269 ~~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~ve~~~~L~~la~~L~Kia~DlrllsSgp 329 (490)
T 3e04_A 269 FAEKVAAKVAALTGLPFVTAPNKFEALAAHDALVELSGAMNTTACSLMKIANDIRFLGSGP 329 (490)
T ss_dssp HHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHHhCCCCcCCCCHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 5 889999995 7899999999999999999999999999999999999999864
No 46
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure initiat YORK SGX research center for structural genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Probab=98.59 E-value=3.7e-07 Score=95.13 Aligned_cols=183 Identities=17% Similarity=0.176 Sum_probs=118.5
Q ss_pred HHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHH
Q psy3416 23 TMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTA 102 (455)
Q Consensus 23 ~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a 102 (455)
.+...|.++..+....++.|+| .||..||.+-.++......|...+.+|.+.+..... .+...++.|.++..+-
T Consensus 82 a~~~~l~e~~g~~g~~vH~g~S-snDv~~Ta~~L~lr~~l~~l~~~l~~L~~~L~~~A~-~~~~~~~~GrTHlQ~A---- 155 (451)
T 3c8t_A 82 PLVEQLSAHAGEAGKYLHWGAT-TQDIMDTATVLQIRDGLALISRRIESVRKALAALAR-NHRDTPMAGRTHLQHA---- 155 (451)
T ss_dssp HHHHHHHHHHGGGGGGSSSSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE----
T ss_pred HHHHHHHHHcccccccccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCceeecccCCCCc----
Confidence 4444455555445677999999 999999999999998888999999998888877754 4556666666654431
Q ss_pred HhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHH
Q psy3416 103 KLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQ 182 (455)
Q Consensus 103 ~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~ 182 (455)
.|. +++ .+++.+...+.-.+.|+..=...+ ..+.+.
T Consensus 156 ------~P~--T~G--------~~~~~~~~~l~r~~~rL~~~~~~~-----~~~~lG----------------------- 191 (451)
T 3c8t_A 156 ------LPV--TFG--------YKAAVWLSAFDRHAARLEEISPRV-----LVVEFS----------------------- 191 (451)
T ss_dssp ------EEE--EHH--------HHHHHHHHHHHHHHHHHHHHHHHH-----CBCCCC-----------------------
T ss_pred ------eee--hHH--------HHHHHHHHHHHHHHHHHHHHHHhh-----cccCCc-----------------------
Confidence 111 111 122223333333333332222111 111111
Q ss_pred HHHhhcccccc------hhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q psy3416 183 RAALAGTTHHI------NRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP 256 (455)
Q Consensus 183 ~~~~~gt~~~~------~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp 256 (455)
+.+||+.++ .+.+++..|||+.+..+ ++.+||++++++++++.++.+|+|||+|+++|++.+++ +++
T Consensus 192 --gAvGT~~~~~~~~~~~~~~~a~~LGl~~~~~~---~~~~rD~~~e~~~~l~~la~~L~kia~Dl~ll~~~e~g--El~ 264 (451)
T 3c8t_A 192 --GASGTLASLGTRGLDVQRELARELNLGVPSIT---WHSARDAVAETVQFLALVSGSLGKLAMDISIMMTTELG--EVA 264 (451)
T ss_dssp --CTTSSCGGGTTCHHHHHHHHHHHHTCBCCSSC---CSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTC--CEE
T ss_pred --hhhhcCcccccccHHHHHHHHHHhCCCCCCCC---CccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc--ccc
Confidence 123443333 56678899999977665 35599999999999999999999999999999998887 567
Q ss_pred cccccc
Q psy3416 257 ESFLTG 262 (455)
Q Consensus 257 ~~~~~~ 262 (455)
+++..+
T Consensus 265 ~p~~~~ 270 (451)
T 3c8t_A 265 EPFVRH 270 (451)
T ss_dssp CC----
T ss_pred cccccC
Confidence 655444
No 47
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics, ssgcid, lyase, tricarboxylic acid cycle; 2.40A {Rickettsia prowazekii}
Probab=98.58 E-value=1.1e-07 Score=99.18 Aligned_cols=160 Identities=18% Similarity=0.193 Sum_probs=107.9
Q ss_pred ccccccccCccccchHHHHHHHHH-HHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhh
Q psy3416 39 IMPGFTHFQIAQPISLGHYLLAYA-SMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDS 117 (455)
Q Consensus 39 vm~grTh~Q~A~P~T~G~~la~~~-~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~ 117 (455)
|..|+| .+|..||.+-.++..-. +.|...+.+|.+.+..... .+...++.|.++-.+. .|. +++
T Consensus 155 Vn~gqS-sND~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~kA~-e~~d~v~~GrTHlQ~A----------~P~--TlG- 219 (482)
T 3gtd_A 155 VNKGQS-SNDSFPTAMHIATVLATKQQLIPALNNLLTYLQDKSK-DWDKIIKIGRTHLQDA----------TPL--TLK- 219 (482)
T ss_dssp CTTTCC-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHT-TGGGCEEEEEETTEEE----------EEE--EHH-
T ss_pred CCCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCcEeeccccCccC----------CCC--cHH-
Confidence 444888 89999999988887554 5788888888887776654 4555555566554431 111 111
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhh-
Q psy3416 118 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRY- 196 (455)
Q Consensus 118 ~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~- 196 (455)
.++..+...+.-.+.|+..- .+.+.++.+ |++++||++++++.
T Consensus 220 -------~~~~~~~~~l~rd~~RL~~~-----~~~l~~~~l------------------------GgtAvGT~~~~~~~~ 263 (482)
T 3gtd_A 220 -------QEFSGYITQIEYALERIEDA-----LKKVYLLAQ------------------------GGTAVGTGINSKIGF 263 (482)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHH-----HTTTTEECT------------------------TCTTTSSCTTSCTTH
T ss_pred -------HHHHHHHHHHHHHHHHHHHH-----HHHHHHhCC------------------------CCccccCCCcCCchh
Confidence 12223333333333333211 122332221 23345777777765
Q ss_pred ------HHHhhhcCCC-CCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3416 197 ------LTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 249 (455)
Q Consensus 197 ------~~a~~l~~~~-~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~ 249 (455)
+++..+||+. +.+|+++++++||++++++++++.++.+|+|||+|+++|+|+|
T Consensus 264 ~~~v~~~la~~lGl~~~~~~n~~da~~~rD~~~e~~~~L~~la~~L~Kia~DlrllsSgp 323 (482)
T 3gtd_A 264 DIKFAQKVAEFTQQPFKTAPNKFESLAAHDALVEFSGTLNTIAVSLMKIANDIRLLGSGP 323 (482)
T ss_dssp HHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCS
T ss_pred HHHHHHHHHHHhCCCCccccchhhhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 4889999995 6899999999999999999999999999999999999999864
No 48
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation, sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium tumefaciens} PDB: 2fen_A
Probab=98.39 E-value=8.7e-07 Score=89.61 Aligned_cols=164 Identities=18% Similarity=0.073 Sum_probs=105.8
Q ss_pred hcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCc
Q psy3416 35 HAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENS 114 (455)
Q Consensus 35 ~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~ 114 (455)
..+.+..|+| .||-.||.+..++..-...|...+.+|.+.+..... .+...++.|.++..+. .|. +
T Consensus 98 ~~~~vH~G~S-snDv~~Ta~~l~lr~~l~~l~~~L~~l~~~L~~~A~-~~~~~~~~GrTHlQ~A----------~P~--T 163 (359)
T 2fel_A 98 AADKVHFGAT-SQDVIDTSLMLRLKMAAEIIATRLGHLIDTLGDLAS-RDGHKPLTGYTRMQAA----------IGI--T 163 (359)
T ss_dssp GGGGTTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHTTSEEEEEETTEEE----------EEE--E
T ss_pred ccchhcCCCC-HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcEeeccccCccc----------ccc--h
Confidence 4677999999 999999999999998888999999998888776654 3445555566554431 111 1
Q ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCcccc-ccCCCCCcchHHHHHHHHhhcccccc
Q psy3416 115 LDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSS-IMPQKKNPDVKDLRQRAALAGTTHHI 193 (455)
Q Consensus 115 ~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSS-tMP~K~NP~~~e~~~~~~~~gt~~~~ 193 (455)
++ .+++.+...+.-.+.|+..=... +..+ |-+...|.. ..|. -++.
T Consensus 164 ~G--------~~~~~~~~~l~r~~~rL~~~~~~-----~~~~--~lGgavGT~~~~~~------------------~~~~ 210 (359)
T 2fel_A 164 VA--------DRAAGWIAPLERHLLRLETFAQN-----GFAL--QFGGAAGTLEKLGD------------------NAGA 210 (359)
T ss_dssp HH--------HHHHHHHHHHHHHHHHHHHHHHH-----CSBC--CCCCTTSSCTTTGG------------------GHHH
T ss_pred HH--------HHHHHHHHHHHHHHHHHHHHHHH-----Hhhc--CCcHHhccCccCcc------------------hHHH
Confidence 11 12222333333333333221111 1111 111112221 1110 0124
Q ss_pred hhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3416 194 NRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 249 (455)
Q Consensus 194 ~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~ 249 (455)
.+.+++..|||+.+. +++++||++++++++++.++.+|+|||+|+++|++.+
T Consensus 211 ~~~~~a~~LG~~~~~----~~~~~RD~~~e~~~~l~~~a~~L~kia~Dirll~s~e 262 (359)
T 2fel_A 211 VRADLAKRLGLADRP----QWHNQRDGIAEFANLLSLVTGTLGKFGQDIALMAEIG 262 (359)
T ss_dssp HHHHHHHHHTCBCCC----CCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHhCcCCCc----hHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 566789999999875 4788999999999999999999999999999999965
No 49
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum aerophilum} SCOP: a.127.1.1
Probab=98.33 E-value=3.8e-06 Score=86.24 Aligned_cols=177 Identities=14% Similarity=0.064 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHH
Q psy3416 23 TMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTA 102 (455)
Q Consensus 23 ~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a 102 (455)
.+...|.++.. ...++.|+| .||..||.+-.++......|...+.+|.+.+..... .+...++.|.++..+-
T Consensus 76 a~~~~l~e~~G--g~~vH~g~S-snD~~~Ta~~l~~r~~l~~l~~~l~~L~~~L~~~A~-~~~~~~~~GrTHlQ~A---- 147 (403)
T 1dof_A 76 SLVLLLEQKSG--CRYVHYGAT-SNDIIDTAWALLIRRALAAVKEKARAVGDQLASMAR-KYKTLEMVGRTHGQWA---- 147 (403)
T ss_dssp HHHHHHHHHHC--CSCTTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE----
T ss_pred HHHHHHHHHcC--CCcccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCeeeccccCccc----
Confidence 34444444443 567899999 999999999999998888999999999888877755 4556666666654431
Q ss_pred HhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHH
Q psy3416 103 KLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQ 182 (455)
Q Consensus 103 ~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~ 182 (455)
.|. +++ .++..+...+.-. .|+..=... +.++.+....+.|+++-| ..
T Consensus 148 ------~P~--T~G--------~~~~~~~~~l~r~-~rL~~~~~~-----~~~~~lGgAvGt~~~~~~--~~-------- 195 (403)
T 1dof_A 148 ------EPI--TLG--------FKFANYYYELYIA-CRQLALAEE-----FIRAKIGGAVGTMASWGE--LG-------- 195 (403)
T ss_dssp ------EEE--EHH--------HHHHHHHHHHHHH-HHHHHHHHH-----HCCBCCCCTTSSCGGGGG--GH--------
T ss_pred ------ccC--cHH--------HHHHHHHHHHHHH-HHHHHHHHH-----hcccCccHHHhhCccccc--cc--------
Confidence 111 111 1122222222222 222211111 111111111112222211 11
Q ss_pred HHHhhcccccchhhHHHhhhcCCCCCCCcchhhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Q psy3416 183 RAALAGTTHHINRYLTAKLLDFEKPSENSLDSIS-DRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFN 251 (455)
Q Consensus 183 ~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~-~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~ 251 (455)
+..+.+++..|||+.+.. .++. +||++++++++++.++.+|+|||+|+++|++.+++
T Consensus 196 ---------~~~~~~~a~~lGl~~~~~---~~~~~~rD~~~e~~~~l~~~a~~L~kia~Dl~ll~~~e~~ 253 (403)
T 1dof_A 196 ---------LEVRRRVAERLGLPHHVI---TTQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIG 253 (403)
T ss_dssp ---------HHHHHHHHHHTTCCBCSS---CSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTC
T ss_pred ---------HHHHHHHHHHhCcCCCCC---cchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence 224566789999996654 3566 99999999999999999999999999999988776
No 50
>4hgv_A Fumarase C, fumarate hydratase class II; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium; 2.09A {Sinorhizobium meliloti}
Probab=98.18 E-value=4.6e-06 Score=87.60 Aligned_cols=163 Identities=12% Similarity=0.079 Sum_probs=101.0
Q ss_pred CcccccccccCccccchHHHHHHH-HHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCch
Q psy3416 37 KTIMPGFTHFQIAQPISLGHYLLA-YASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSL 115 (455)
Q Consensus 37 ~tvm~grTh~Q~A~P~T~G~~la~-~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~ 115 (455)
|-|..|+| .||..||.+-.++.. ..+.|...+++|.+.+..... .+...++.|.++..+. .|. ++
T Consensus 164 d~Vh~gqS-snDv~~TA~~l~~~~~~~~~L~~~L~~L~~~L~~kA~-~~~~~~~~GRTHlQ~A----------~P~--Tl 229 (495)
T 4hgv_A 164 DHVNMSQS-SNDTYPTAMHIACAERVIHDLLPALKHLHKALEEKVK-AFDHIIKIGRTHTQDA----------TPL--TL 229 (495)
T ss_dssp CCCTTTCC-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-HHTTCEEEEEETTEEE----------EEE--EH
T ss_pred HhccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCCeeecccCCCCc----------eee--cH
Confidence 45788999 999999999888874 446788888888777766544 3444555566554431 111 11
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchh
Q psy3416 116 DSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINR 195 (455)
Q Consensus 116 ~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~ 195 (455)
+ .++..+...+.-.+.|+-.-... +.++ +- +++++||+..+++
T Consensus 230 G--------~~~~~~~~~l~r~~~RL~~~~~~-----~~~~--~l----------------------GgtAvGtg~~~~~ 272 (495)
T 4hgv_A 230 G--------QEFSGYAAQVASSIKRIEMTLPG-----LCEL--AQ----------------------GGTAVGTGLNAPV 272 (495)
T ss_dssp H--------HHHHHHHHHHHHHHHHHHHTHHH-----HTEE--CT----------------------TCTTTSSCTTSCT
T ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHH-----HHhh--cC----------------------CcchhhhcccCch
Confidence 1 12223333333333333221111 1111 11 1122233222222
Q ss_pred h-------HHHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy3416 196 Y-------LTAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQF 250 (455)
Q Consensus 196 ~-------~~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~ 250 (455)
. .++..+|+. .+.+|+++++++||+++++++.++.++.+|+|||+|+++|+|+|.
T Consensus 273 ~~~~~v~~~la~~~gl~f~~a~n~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dirll~S~~~ 335 (495)
T 4hgv_A 273 GFAEKVAEEIAAITGIGFTSAPNKFEALAAHDSMVFSHGAINATAAALFKIANDIRFLGSGPR 335 (495)
T ss_dssp THHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSS
T ss_pred hHHHHHHHHHHHHhCCCccccCCHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 2 245666776 667899999999999999999999999999999999999998764
No 51
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB: 2hvg_A
Probab=98.10 E-value=1.1e-05 Score=84.25 Aligned_cols=173 Identities=11% Similarity=0.101 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHH--------HhcCcccccccccCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCCcccc
Q psy3416 19 ELLLTMIKHLTDLSD--------KHAKTIMPGFTHFQIAQPISLGHYLLAYAS-MFQRDINRLIDCRKRVNISPLGSAAL 89 (455)
Q Consensus 19 ~~l~~l~~~L~~~A~--------~~~~tvm~grTh~Q~A~P~T~G~~la~~~~-~L~r~~~rL~~~~~r~~~~~lGga~~ 89 (455)
.++..+...|.++.. +....++.|+| .||-.||.+..++..-.. .|...+.+|.+.+..... .+...++
T Consensus 88 hDV~a~e~~l~e~~g~~~~~~~~~~~~~iH~g~S-snDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~-~~~~~~m 165 (465)
T 2qga_B 88 HDVKAVEYFVKEKLKNSKREDLLKIKEYVHYLCT-SEDINNVAYATCLKACLNDVVIPCLEKIMLKLKDLAV-EYSHVPL 165 (465)
T ss_dssp CHHHHHHHHHHHHHHTSCCHHHHHHGGGTTTTCC-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-HTTTCEE
T ss_pred CChHHHHHHHHHHhcccccccchhhhhhccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCcEe
Confidence 445666666777664 56788999999 999999999999998888 799999998888877755 4555566
Q ss_pred CCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCcccccc
Q psy3416 90 AGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIM 169 (455)
Q Consensus 90 ~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStM 169 (455)
.|.++..+. .|. +++ .+++.+...+.-.+.|+ .... ..+..
T Consensus 166 ~GrTHlQ~A----------~P~--T~G--------~~~~~~~~~l~r~~~rL-------~~~~----~~~~~-------- 206 (465)
T 2qga_B 166 LSRTHGQPA----------SST--TFG--------KEMANFYARIHHHVGVI-------RRVK----VCAKF-------- 206 (465)
T ss_dssp EEEETTEEE----------EEE--EHH--------HHHHHHHHHHHHHHHHH-------HHSC----CEECC--------
T ss_pred eccccCccc----------ccc--hHH--------HHHHHHHHHHHHHHHHH-------HHHH----Hhccc--------
Confidence 666654431 111 111 12223333333333333 2111 01110
Q ss_pred CCCCCcchHHHHHHHHhhcc------ccc------chhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHH
Q psy3416 170 PQKKNPDVKDLRQRAALAGT------THH------INRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSR 237 (455)
Q Consensus 170 P~K~NP~~~e~~~~~~~~gt------~~~------~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~ 237 (455)
++++|| .++ +.+.+.+..|||+.+. ++ +++++||++++++++++.++.+|+|
T Consensus 207 --------------~GAvGT~~a~~~~~p~~d~~~~~~~~~~~~LGl~~~~-~~-~~~~~rD~~~e~~~~l~~~a~~L~k 270 (465)
T 2qga_B 207 --------------NGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTYSI-YC-TQIQDHDYICELCDGLARANGTLID 270 (465)
T ss_dssp --------------CCTTSSCHHHHHHCTTCCHHHHHHHHHHHHHCCEECC-CC-SSSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred --------------cchhcCccccccccCcccHHHHHHHHHHHHhCCCCCC-Cc-cchhccHHHHHHHHHHHHHHHHHHH
Confidence 111232 111 3344456679998654 33 7899999999999999999999999
Q ss_pred HHHHHHhhhcc
Q psy3416 238 ISEEFIIFMNP 248 (455)
Q Consensus 238 ~~~d~~~~~s~ 248 (455)
||+|+++|+|.
T Consensus 271 ia~Di~ll~s~ 281 (465)
T 2qga_B 271 LCVDIWLYISN 281 (465)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHhCC
Confidence 99999999874
No 52
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 1.90A {Legionella pneumophila subsp}
Probab=97.83 E-value=4.3e-05 Score=79.71 Aligned_cols=175 Identities=11% Similarity=0.083 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHHHH------HhcCcccccccccCccccchHHHHHHHHHH-HHHHHHHHHHHHHHHhcccCCCccccCCC
Q psy3416 20 LLLTMIKHLTDLSD------KHAKTIMPGFTHFQIAQPISLGHYLLAYAS-MFQRDINRLIDCRKRVNISPLGSAALAGT 92 (455)
Q Consensus 20 ~l~~l~~~L~~~A~------~~~~tvm~grTh~Q~A~P~T~G~~la~~~~-~L~r~~~rL~~~~~r~~~~~lGga~~~G~ 92 (455)
++..+...|.++.. +....++.|+| .||..||.+..++..... .|...+.+|.+.+..... .+...++.|.
T Consensus 95 Dv~a~e~~l~e~~g~~~~~~~~~~~iH~g~S-snDv~~Ta~~L~lr~~l~~~l~~~L~~l~~~L~~~A~-~~~~~~m~Gr 172 (459)
T 3bhg_A 95 DVKAVEYYLQDKFQENEQLKSCVAFIHFACT-SEDINNLAYALMIKQAIAQVIQPTIAEIMGSITLLGK-QHADVAMLSR 172 (459)
T ss_dssp HHHHHHHHHHHHHTTSTTGGGGGGGTTTTCC-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-HTTTCEEEEE
T ss_pred ChHHHHHHHHHHhcccccCchhhhhhcCCCC-HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCCEeecc
Confidence 55666667777664 35678999999 999999999999998888 699999998888877754 4555566666
Q ss_pred CcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCC-CCccc-----
Q psy3416 93 THHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPES-FLTGS----- 166 (455)
Q Consensus 93 ~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~-~~~gS----- 166 (455)
++..+. .|. +++ .+++.+...+.-.+.|+ .... . .+.. ...|.
T Consensus 173 THlQ~A----------~P~--T~G--------~~~~~~~~~l~r~~~rL-------~~~~--~--~~~~~GAvGT~~a~~ 221 (459)
T 3bhg_A 173 THGQPA----------TPT--TMG--------KELVNFVARLKRPQQQL-------AEVL--I--PAKFNGAVGNYNAHV 221 (459)
T ss_dssp ETTEEE----------EEE--EHH--------HHHHHHHHHHHHHHHHH-------HHCC--C--EECCCCSSSSCHHHH
T ss_pred ccCccc----------eec--hHH--------HHHHHHHHHHHHHHHHH-------HHHH--H--hhccccccccccccc
Confidence 654431 111 111 12223333333333333 2111 0 1110 01111
Q ss_pred cccCCCCCcchHHHHHHHHhhccccc-chhhHHHhhhcCCCCCCCcch-hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 167 SIMPQKKNPDVKDLRQRAALAGTTHH-INRYLTAKLLDFEKPSENSLD-SISDRDFVIEFISTCCLIVMHLSRISEEFII 244 (455)
Q Consensus 167 StMP~K~NP~~~e~~~~~~~~gt~~~-~~~~~~a~~l~~~~~~~~s~~-a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~ 244 (455)
...|. .+ |+ +++.+ +..|||.. |+.+ ++++||++++++++++.++.+|+|||+|+++
T Consensus 222 ~~~~~-~~----------------~~~~~~~~-~~~LGl~~---~~~~~~~~~rD~~~e~~~~l~~~a~~L~kia~Di~l 280 (459)
T 3bhg_A 222 AAYPE-VD----------------WRKHCANF-VTSLGLSF---NAYTTQIEPHDGIAEVSQIMVRINNILLDYTQDIWS 280 (459)
T ss_dssp HHCTT-SC----------------HHHHHHHH-HHHTTCEE---CSSCSSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCc-cc----------------HHHHHHHH-HHHhCCCC---CccccchhcCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 01110 00 11 22223 33388873 3444 6899999999999999999999999999999
Q ss_pred hhcc
Q psy3416 245 FMNP 248 (455)
Q Consensus 245 ~~s~ 248 (455)
|+|.
T Consensus 281 l~s~ 284 (459)
T 3bhg_A 281 YISL 284 (459)
T ss_dssp HHHT
T ss_pred HhCC
Confidence 9874
Done!