Query psy3416
Match_columns 455
No_of_seqs 172 out of 1711
Neff 7.2
Searched_HMMs 13730
Date Sat Aug 17 00:28:35 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3416.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/3416hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1tj7a_ a.127.1.1 (A:) Arginin 100.0 2.7E-72 2E-76 587.1 35.6 345 1-442 110-454 (455)
2 d1k62b_ a.127.1.1 (B:) Arginin 100.0 3.7E-72 2.7E-76 586.5 34.5 348 1-446 111-458 (459)
3 d1tjva_ a.127.1.1 (A:) Arginin 100.0 1.5E-70 1.1E-74 573.3 34.1 350 1-448 100-449 (449)
4 d1q5na_ a.127.1.1 (A:) 3-carbo 100.0 7.9E-60 5.8E-64 491.3 27.0 329 1-437 108-443 (444)
5 d1re5a_ a.127.1.1 (A:) 3-carbo 100.0 4.7E-59 3.4E-63 485.9 32.1 331 1-442 107-447 (448)
6 d1f1oa_ a.127.1.1 (A:) Adenylo 100.0 3.9E-59 2.9E-63 480.7 29.3 312 1-414 89-407 (408)
7 d1c3ca_ a.127.1.1 (A:) Adenylo 100.0 1.2E-58 8.7E-63 480.2 29.1 323 1-433 96-426 (429)
8 d1j3ua_ a.127.1.1 (A:) L-aspar 100.0 6.3E-55 4.6E-59 455.2 22.5 309 1-418 140-457 (462)
9 d1jswa_ a.127.1.1 (A:) L-aspar 100.0 4.6E-53 3.3E-57 440.1 26.6 302 1-412 147-458 (459)
10 d1yfma_ a.127.1.1 (A:) Fumaras 100.0 2.1E-53 1.6E-57 442.0 23.9 303 1-416 142-458 (459)
11 d1vdka_ a.127.1.1 (A:) Fumaras 100.0 2.4E-53 1.8E-57 442.5 24.3 307 1-417 140-457 (460)
12 d1fuoa_ a.127.1.1 (A:) Fumaras 100.0 5.7E-53 4.1E-57 439.5 26.0 305 1-415 140-455 (456)
13 d1dofa_ a.127.1.1 (A:) Adenylo 100.0 1.2E-52 8.9E-57 431.5 21.0 289 1-395 98-395 (402)
14 d1k62b_ a.127.1.1 (B:) Arginin 98.9 6.5E-09 4.7E-13 106.2 14.1 175 25-249 88-262 (459)
15 d1tjva_ a.127.1.1 (A:) Arginin 98.9 6.8E-09 5E-13 105.7 14.3 176 24-249 76-251 (449)
16 d1tj7a_ a.127.1.1 (A:) Arginin 98.8 8.9E-09 6.5E-13 105.0 13.4 177 23-249 85-261 (455)
17 d1jswa_ a.127.1.1 (A:) L-aspar 98.7 3.5E-07 2.5E-11 93.0 18.4 177 37-257 136-313 (459)
18 d1f1oa_ a.127.1.1 (A:) Adenylo 98.6 9.9E-07 7.2E-11 88.3 18.5 182 20-257 61-245 (408)
19 d1j3ua_ a.127.1.1 (A:) L-aspar 98.5 6E-07 4.4E-11 91.3 16.0 182 24-252 103-301 (462)
20 d1vdka_ a.127.1.1 (A:) Fumaras 98.5 2.2E-06 1.6E-10 86.9 18.9 176 37-256 129-306 (460)
21 d1fuoa_ a.127.1.1 (A:) Fumaras 98.4 1.2E-05 8.6E-10 81.4 22.0 180 23-253 102-303 (456)
22 d1c3ca_ a.127.1.1 (A:) Adenylo 98.3 1.2E-06 9.1E-11 88.1 12.3 186 20-256 68-253 (429)
23 d1yfma_ a.127.1.1 (A:) Fumaras 98.2 2.3E-06 1.7E-10 86.7 11.3 169 37-250 131-302 (459)
24 d1q5na_ a.127.1.1 (A:) 3-carbo 98.2 2.5E-06 1.8E-10 86.2 10.4 170 34-253 94-264 (444)
25 d1dofa_ a.127.1.1 (A:) Adenylo 97.9 3.6E-05 2.6E-09 76.4 12.5 188 22-263 74-261 (402)
26 d1re5a_ a.127.1.1 (A:) 3-carbo 97.8 0.00013 9.8E-09 73.1 15.0 186 18-253 77-263 (448)
27 d1yqga1 a.100.1.10 (A:153-263) 27.8 1.1E+02 0.0081 22.7 9.1 28 352-379 22-49 (111)
28 d1gdta1 a.4.1.2 (A:141-183) ga 24.1 37 0.0027 21.4 3.4 37 336-376 5-41 (43)
29 d1ixca1 a.4.5.37 (A:1-89) LysR 22.1 1.1E+02 0.0084 21.4 6.6 50 29-79 36-85 (89)
No 1
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=2.7e-72 Score=587.13 Aligned_cols=345 Identities=39% Similarity=0.665 Sum_probs=326.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|++||||||||+|||+|||||||+++|+++|.|+.+||.+++++++
T Consensus 110 ~~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~A~~~~~~~m~GrTH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~ 189 (455)
T d1tj7a_ 110 QVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAYVEMLARDESRLQDALKRLD 189 (455)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHHhhhchhhhHHHHhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
.+|+||++++|++++.+++++++.|||..+..|+++|+++||+++++.+.++.++.+++|||+|+++|++++++++
T Consensus 190 ~~~lG~~a~~g~~~~~~~~~~a~~Lg~~~~~~n~~~~~~~rd~~~e~~~~l~~~~~~L~ria~Dl~l~~s~e~~~~---- 265 (455)
T d1tj7a_ 190 VSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFV---- 265 (455)
T ss_dssp CBCTTCTTTTCCSSCCCHHHHHHHHTCSSBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCE----
T ss_pred HHHhcccccccCcCcchHHHHHHHhCCCcccCCccchhhchHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhee----
Confidence 9999999999999999999999999999999999999999999999999999998888877777777776666554
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
T Consensus 266 -------------------------------------------------------------------------------- 265 (455)
T d1tj7a_ 266 -------------------------------------------------------------------------------- 265 (455)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDN 320 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 320 (455)
++|+.+++|||||||||||+.+|.++++++.+.|...+++.+++++|++||+|+++++..++++++.
T Consensus 266 -------------~~~~~~~~GSSiMP~KrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~~~ 332 (455)
T d1tj7a_ 266 -------------ELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDT 332 (455)
T ss_dssp -------------ECCGGGCBCCTTCTTCCBCHHHHHHHHTHHHHHHHHHHHHHHHTTCCSSCCGGGGGHHHHHHHHHHH
T ss_pred -------------eccccccccccccccccCchHHHHHHhHHHHHHhHHHHHHHHHhcccHHHHhhHHHHHHHHHHHHHH
Confidence 4455577888888888888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhh
Q psy3416 321 IIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFH 400 (455)
Q Consensus 321 ~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~ 400 (455)
+..++..+..++++++||+++|++++..|++++|+++++|+++|+|||+||++|++++++|.++|+++.|+.+++.+.+.
T Consensus 333 ~~~~l~~~~~~i~~l~vn~erm~~~~~~~~~~at~la~~Lv~kgi~freAh~~V~~~v~~A~~~g~~l~el~l~e~~~~~ 412 (455)
T d1tj7a_ 333 WLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFS 412 (455)
T ss_dssp HHHHHHHHHHHHTTCEECHHHHHHHHTSTTTTHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCGGGSCHHHHTTTC
T ss_pred HHHHHHHHHHhhhhhhhcchhHHHHhhcchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998887777
Q ss_pred cCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHH
Q psy3416 401 SYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYI 442 (455)
Q Consensus 401 ~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~ 442 (455)
..+++|+..+|||+++|++|.++||++|++|+++|+.++++|
T Consensus 413 ~~~~~di~~~ldp~~~v~~r~s~GG~ap~~V~~~i~~ar~~L 454 (455)
T d1tj7a_ 413 QVIDEDVYPILSLQSCLDKRAAKGGVSPQQVAQAIAFAQARL 454 (455)
T ss_dssp TTCCTTHHHHTSHHHHHHTCCSTTCCSHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHhCCHHHHHHhCcCCCCCCHHHHHHHHHHHHHhc
Confidence 888899999999999999999999999999999999999876
No 2
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00 E-value=3.7e-72 Score=586.51 Aligned_cols=348 Identities=37% Similarity=0.621 Sum_probs=328.5
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+|||||||||||+++|+++|.|+++||.+++++++
T Consensus 111 ~~~Ta~~L~~r~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~GrTH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~ 190 (459)
T d1k62b_ 111 QVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILSHAVALTRDSERLLEVRKRIN 190 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccceecceeecccCCCeeHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
.+|+||++++|+++++++++.++.|||..+..|+++|+++||++++++++++.++.+++|||+|+++|+++|++++
T Consensus 191 ~~~lGg~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~sRd~~~e~~~~l~~l~~~l~ria~Dl~l~~~~e~~~~---- 266 (459)
T d1k62b_ 191 VLPLGSGAIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFV---- 266 (459)
T ss_dssp CBCTTCTTTTCCTTCCCHHHHHHHTTCSCBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSE----
T ss_pred hhhcccccCCCCCcccchhhhhhHHhhccccccchhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHhccccccce----
Confidence 9999999999999999999999999999999999999999999999999999999988888887777777666554
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
T Consensus 267 -------------------------------------------------------------------------------- 266 (459)
T d1k62b_ 267 -------------------------------------------------------------------------------- 266 (459)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDN 320 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 320 (455)
.+|+.+++|||||||||||+.+|+++++++.+.|...+++..++++|++||+|++++|..+|++++.
T Consensus 267 -------------~~~~~~~~GSSiMPqKrNP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~rd~~~~~~~l~~~~~~ 333 (459)
T d1k62b_ 267 -------------QLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTYNKDLQEDKEAVFEVSDT 333 (459)
T ss_dssp -------------ECCGGGCEECSSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCGGGGGHHHHHHHHHHH
T ss_pred -------------eecccccccccccccccccHHHHHHHHHhhhhhhhhhhHHHHHhcChhhhcccchhcchhhhhhhHH
Confidence 4455567788888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhh
Q psy3416 321 IIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFH 400 (455)
Q Consensus 321 ~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~ 400 (455)
+..++..+..++++++||++||++|+.++ +++|+++++|+++|+|||+||++|+++|+.|.++|+++.++..++.+.+.
T Consensus 334 ~~~~l~~~~~vi~~l~vn~erm~~~l~~~-~~At~la~~Lv~~Gi~fr~AH~~V~~lv~~a~~~g~~l~~l~~~e~~~~~ 412 (459)
T d1k62b_ 334 MSAVLQVATGVISTLQIHQENMGQALSPD-MLATDLAYYLVRKGMPFRQAHEASGKAVFMAETKGVALNQLSLQELQTIS 412 (459)
T ss_dssp HHHHHHHHHHHHHHCEECHHHHHHTCCGG-GTHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTSCGGGSCHHHHHTTC
T ss_pred HHhhhhhhhhccceeEechhhHHHHHhhc-chHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHcCHHHHHHhc
Confidence 99999999999999999999999999765 58999999999999999999999999999999999999999998888888
Q ss_pred cCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHh
Q psy3416 401 SYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYIQKIT 446 (455)
Q Consensus 401 ~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~~~~~ 446 (455)
+.+++|+.++|||+++|+.|.++||++|++|+++|+.+|+.|++.+
T Consensus 413 ~~~~~dl~~~ldp~~~v~~r~~~GG~ap~~V~~~i~~~r~~L~~~~ 458 (459)
T d1k62b_ 413 PLFSGDVICVWDYRHSVEQYGALGGTARSSVDWQIRQVRALLQAQQ 458 (459)
T ss_dssp TTCCGGGGGTTCHHHHHTTCCSTTSSSHHHHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHhCCHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHhcc
Confidence 8888899999999999999999999999999999999999998865
No 3
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]}
Probab=100.00 E-value=1.5e-70 Score=573.27 Aligned_cols=350 Identities=40% Similarity=0.655 Sum_probs=329.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++||||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 100 ~~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~A~~~~~t~~~GrTH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~ 179 (449)
T d1tjva_ 100 QVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYDHLQKAQPIRWSQFLLSHAVALTRDSERLGEVKKRIN 179 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhhhccchhhhhhhhccCCccHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccC
Q psy3416 81 ISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 160 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e 160 (455)
.+|+||++++|++++++++++++.+||..+..|+++|+++||++++++++++.++.+++|||+|+++|+++|++.+
T Consensus 180 ~~~lGg~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~rd~~~e~~~~l~~la~~L~kia~Dl~l~~~~e~~~~---- 255 (449)
T d1tjva_ 180 VLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFL---- 255 (449)
T ss_dssp EECTTCTTTTCCTTCCCHHHHHHHHTCSEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSE----
T ss_pred hhcccccccccccchhhHHHHHHHHhhhcccCCccchhhccchHHHHHHHHHHHHHhHHHHHHHHHHHhcCchhhh----
Confidence 9999999999999999999999999999999999999999999999999999999988888887777777666543
Q ss_pred CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 161 SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 161 ~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
T Consensus 256 -------------------------------------------------------------------------------- 255 (449)
T d1tjva_ 256 -------------------------------------------------------------------------------- 255 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhHHHHH
Q psy3416 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDN 320 (455)
Q Consensus 241 d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 320 (455)
++++.+++|||+|||||||+.+|+++++++.+.|...+++.+++++|++||+|+++.|..++++++.
T Consensus 256 -------------e~~~~~~~GSSiMP~KrNP~~~E~i~~~a~~v~g~~~~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~ 322 (449)
T d1tjva_ 256 -------------TLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLPSTYNKDLQEDKEAVFDVVDT 322 (449)
T ss_dssp -------------ECCGGGSEECTTSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSBCGGGGGHHHHHHHHHHH
T ss_pred -------------cccccccccccccccccchHHHHHHHHHHHhHHHhhhhHHHHHhcCchhhhchHhhhhhhhhhHHHH
Confidence 4555577888888888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHHHHhhhh
Q psy3416 321 IIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFH 400 (455)
Q Consensus 321 ~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~~~~~~~ 400 (455)
+..++..+..++++++||+++|++++.+ +.++++++++|+++|+|||+||++|+++|+.|.++|+++.|+.+++.+.+.
T Consensus 323 ~~~~L~~~~~~l~~l~vn~e~m~~~l~~-~~~at~la~~Lv~kgipfr~Ah~~V~~~v~~A~~~g~~l~el~l~e~~~~~ 401 (449)
T d1tjva_ 323 LTAVLQVATGVISTLQISKENMEKALTP-EMLATDLALYLVRKGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSIS 401 (449)
T ss_dssp HHHHHHHHHHHHHHCEECHHHHHHTCCG-GGGHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTSCGGGSCHHHHHTTC
T ss_pred HHHHHHHhhhccchhhcccccchhhhhh-hchHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHhCHHHHHHhC
Confidence 9999999999999999999999998864 468999999999999999999999999999999999999999998888888
Q ss_pred cCCchHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHHHHHhch
Q psy3416 401 SYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYIQKITNK 448 (455)
Q Consensus 401 ~~~~~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~~~~~~~ 448 (455)
+.+++|+.++|||+++|+.|.++||++|++|+++|+.+++.+++.+++
T Consensus 402 ~~~~~di~~~ldp~~~v~~r~~~Gg~ap~~V~~~i~~~r~~l~~~~~~ 449 (449)
T d1tjva_ 402 PQFSSDVSQVFNFVNSVEQYTALAGTAKSSVTTQIEQLRELMKKQKEQ 449 (449)
T ss_dssp TTCCGGGGGGSCHHHHHTTCCSTTSSSHHHHHHHHHHHHHHHHHHHTC
T ss_pred ccchHHHHHHcCHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999999999999988753
No 4
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Probab=100.00 E-value=7.9e-60 Score=491.26 Aligned_cols=329 Identities=21% Similarity=0.264 Sum_probs=280.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.+..++++|.++|++|++|+||||||+|||+||||||||++|+++|.|+++||.+++++++
T Consensus 108 i~~ta~~l~~~~~~~~l~~~l~~l~~~l~~~a~~~~~~~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 187 (444)
T d1q5na_ 108 ILDTACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWASAFKRDLDRINAIKARVL 187 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhhhhhhHHHHhhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHH----HHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee
Q psy3416 81 ISPLGSAALAGTTHHINRYL----TAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 156 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~----~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el 156 (455)
.+|+||++++|++++.++.. ++..||+.. |..+|+++||+++|++++++.++++++|||+|+++|+++|++++
T Consensus 188 ~~~lgga~g~~~~~~~~~~~~~~~l~~~l~l~~---~~~~~~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~~~e~~~~ 264 (444)
T d1q5na_ 188 VAQLGGAVGSLASLQDQGSIVVEAYAKQLKLGQ---TACTWHGERDRIVEIASVLGIITGNVGKMARDWSLMMQTEIAEV 264 (444)
T ss_dssp BCCCCCTTSSCGGGTTCHHHHHHHHHHHHTCBC---CSSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCE
T ss_pred HhhccccccccccccchhHHHHHHhhhcccccc---cccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhcccccccc
Confidence 99999999888888776654 455566654 44679999999999999999999999999999999999999987
Q ss_pred cccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q psy3416 157 TLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLS 236 (455)
Q Consensus 157 ~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~ 236 (455)
.+|..
T Consensus 265 ~e~~~--------------------------------------------------------------------------- 269 (444)
T d1q5na_ 265 FEPTA--------------------------------------------------------------------------- 269 (444)
T ss_dssp ECCC----------------------------------------------------------------------------
T ss_pred ccccc---------------------------------------------------------------------------
Confidence 65532
Q ss_pred HHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccchHhH
Q psy3416 237 RISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFD 316 (455)
Q Consensus 237 ~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~l~~ 316 (455)
..++|||+|||||||+.+|.+++.++.+.|....+.....+.+..+..|++..+..+++
T Consensus 270 ---------------------~~~~GSSiMP~K~NP~~~E~i~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 328 (444)
T d1q5na_ 270 ---------------------KGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQSMVQEHERSLGAWHAEWLSLPE 328 (444)
T ss_dssp ---------------------------------CCCHHHHHHHHHHHHHHHHHHHHHHTTCCCTTSCSSHHHHHHHHHHH
T ss_pred ---------------------cccccchhhhhccCchhHHHHHHHHHhHHHHHHHHHHHhhcchhhcchhhhHHhhhhcc
Confidence 12456666666667777777777777788877777776666666677778888999999
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCHHHHHHHh--ccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHH
Q psy3416 317 TVDNIIMCLVASGKLIEKATFNEQEMYETA--IKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLA 394 (455)
Q Consensus 317 ~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l--~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~ 394 (455)
++..+..++..+..++++|+||+++|++|+ ..++++++.++..|++ ++|||+||++|+++++.|.++|+++.|+..+
T Consensus 329 ~~~~~~~~l~~~~~~l~~l~vn~erm~~nle~s~~~i~se~~~~~L~~-~ig~~~Ah~iV~~~~~~a~~~~~~l~el~~~ 407 (444)
T d1q5na_ 329 IFQLTAGALERTLDVLKGMEVNAENMHQNIECTHGLIMAEAVMMALAP-HMGRLNAHHVVEAACKTAVAEQKHLKDIISQ 407 (444)
T ss_dssp HHHHHHHHHHHHHHHHHHCEECHHHHHHHHHTTTTGGGHHHHHHHHHH-HHCHHHHHHHHHHHHHHHHHHTCCHHHHHTT
T ss_pred cchhhhhHHHHHHhHHHHhcchhhHHHHHHHhccChHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHh
Confidence 999999999999999999999999999998 4688899999999976 5899999999999999999999999999775
Q ss_pred HHhhhhcCCc-hHHHHhcChhhhhhhhccCCCCcHHHHHHHHHH
Q psy3416 395 ELKTFHSYIS-DDIIDILCIENSIKFKNHIGGTSPEQVKITVQG 437 (455)
Q Consensus 395 ~~~~~~~~~~-~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~ 437 (455)
. +++..+++ +++.++|||+ .|+|.++++|++++++
T Consensus 408 ~-~~~~~~L~~~el~~ildP~-------~yiG~a~~~v~~~l~~ 443 (444)
T d1q5na_ 408 V-DEVKQYFNPSQLDEIFKPE-------SYLGNIQDQIDAVLQE 443 (444)
T ss_dssp C-HHHHTTCCHHHHHHHTCGG-------GGCTTHHHHHHHHHHC
T ss_pred h-hHhhcCCCHHHHHHhcCHH-------HHcCcHHHHHHHHHhc
Confidence 4 55667676 5899999998 4999999999999975
No 5
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Probab=100.00 E-value=4.7e-59 Score=485.88 Aligned_cols=331 Identities=20% Similarity=0.234 Sum_probs=282.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.+..|+++|.++|++|++|+||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 107 i~~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~a~~~~~~~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 186 (448)
T d1re5a_ 107 AMDTGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLL 186 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHhhhHHHHHHHHHHhhhhhHHHHHHHHHHhhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcc----hHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee
Q psy3416 81 ISPLGSAALAGTTHHIN----RYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 156 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~----~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el 156 (455)
.+|+||+++++++++.+ .+.+++.|||..+. .+|+++||++++++++++.++.+++|||+|+++|++++++++
T Consensus 187 ~~~lgga~g~~~~~~~~~~~~~~~l~~~lgl~~~~---~~~~~~rd~~~e~~~~l~~~~~~l~kia~di~~l~~~~~~~~ 263 (448)
T d1re5a_ 187 VLQFGGASGSLAALGSKAMPVAEALAEQLKLTLPE---QPWHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEV 263 (448)
T ss_dssp BCCCCCTTSSCGGGGGGHHHHHHHHHHHHTCBCCS---SCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCE
T ss_pred hcccCcCccchhcccchhHHHHHHHHHHhCCCCCC---CcchHhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhh
Confidence 99999998766555443 35788889998654 369999999999999999999999999999999999988887
Q ss_pred cccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q psy3416 157 TLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLS 236 (455)
Q Consensus 157 ~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~ 236 (455)
.+|..
T Consensus 264 ~e~~~--------------------------------------------------------------------------- 268 (448)
T d1re5a_ 264 FEPSA--------------------------------------------------------------------------- 268 (448)
T ss_dssp ECCCC---------------------------------------------------------------------------
T ss_pred hcccc---------------------------------------------------------------------------
Confidence 55421
Q ss_pred HHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccc---ccccch
Q psy3416 237 RISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL---QEDKLP 313 (455)
Q Consensus 237 ~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~---~~~~~~ 313 (455)
.+++|||+|||||||+.+|.++++++.+.|...+++. +++.+|++|. +..|..
T Consensus 269 ---------------------~~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~~~~---~~~~~~erd~~~~~~~~~~ 324 (448)
T d1re5a_ 269 ---------------------PGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFA---AMPQEHERSLGLWHAEWET 324 (448)
T ss_dssp ---------------------C----------CCCCHHHHHHHHHHHHHHHHHHHHHH---TCCCCTTBCSSTTTTHHHH
T ss_pred ---------------------ccCCccchhhhccCcchHHHHHHHHHHHHHHHHHHhh---hcchhhHhhhhhhhhhhhh
Confidence 2356777777777888888888888888888877655 4567778886 556778
Q ss_pred HhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHh--ccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhh
Q psy3416 314 LFDTVDNIIMCLVASGKLIEKATFNEQEMYETA--IKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDL 391 (455)
Q Consensus 314 l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l--~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~ 391 (455)
+++++..+..++..+..++++|+||+++|++|+ ..+++++|++++.|++ |+|||+||++|+++++.|..+|+++.++
T Consensus 325 ~~~~~~~~~~~~~~~~~~l~~l~vn~~~m~~~l~~s~~~~~ae~~~~~L~~-~ig~~~Ah~iv~~~~~~a~~~~~~l~~~ 403 (448)
T d1re5a_ 325 LPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSIVLAQ-RLGRDRAHHLLEQCCQRAVAEQRHLRAV 403 (448)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTSTTGGGHHHHHHHHHH-HSCHHHHHHHHHHHHHHHHHTTCCHHHH
T ss_pred hhhhhHHHHHHHHhhhcccccCcccHHHHHHHHHhccCHHHHHHHHHHHhh-cCCHHHHHHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999999999999999999997 4678999999999986 5999999999999999999999999999
Q ss_pred hHHHHhhhhcCCc-hHHHHhcChhhhhhhhccCCCCcHHHHHHHHHHHHHHH
Q psy3416 392 SLAELKTFHSYIS-DDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYI 442 (455)
Q Consensus 392 ~~~~~~~~~~~~~-~~l~~~ldp~~~v~~~~~~~G~a~~~v~~~l~~~~~~~ 442 (455)
+.++ +.+...++ +++..+|||+ .|+|.++++|+++++++++.+
T Consensus 404 ~~~~-~~~~~~l~~~~l~~~ldP~-------~~iG~a~~~v~r~l~~~~~~~ 447 (448)
T d1re5a_ 404 LGDE-PQVSAELSGEELDRLLDPA-------HYLGQARVWVARAVSEHQRFT 447 (448)
T ss_dssp HHTC-HHHHHHSCHHHHHHHTCGG-------GCCTTHHHHHHHHHHHHHHHH
T ss_pred HHhh-HhhhCCCCHHHHHHhCCHH-------HhCCcHHHHHHHHHHHHHHhh
Confidence 8765 34444454 6899999998 499999999999999998764
No 6
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]}
Probab=100.00 E-value=3.9e-59 Score=480.73 Aligned_cols=312 Identities=19% Similarity=0.238 Sum_probs=273.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..++++|.++|++|++|+||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 89 ~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~~~~~t~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rL~~~~~~~~ 168 (408)
T d1f1oa_ 89 VVDTALSYLLKQANDILLKDLERFVDIIKEKAKEHKYTVMMGRTHGVHAEPTTFGLKLALWHEEMKRNLERFKQAKAGIE 168 (408)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCccccchHhcCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCc-CcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeccc
Q psy3416 81 ISPLGSAALAGTTH-HINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP 159 (455)
Q Consensus 81 ~~~lGga~~~G~~~-~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~ 159 (455)
.+|+||++++|... |.+++++++.|||..+..+ +|+++||+++|+.++++.++++++|||+|+++|++++++++..
T Consensus 169 ~~~lGGA~Gt~~~~~~~~~~~~~~~lg~~~~~~~--~~~~~rd~~~e~~~~l~~la~~l~kia~Dl~~~~s~~~~~~~e- 245 (408)
T d1f1oa_ 169 VGKISGAVGTYANIDPFVEQYVCEKLGLKAAPIS--TQTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSETREVEE- 245 (408)
T ss_pred ccccchhhhcccCCChhHHHHHHHHhcCcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccceeee-
Confidence 99999987554443 5567789999999865544 6899999999999999999999999999999999988776532
Q ss_pred CCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHH
Q psy3416 160 ESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRIS 239 (455)
Q Consensus 160 e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~ 239 (455)
T Consensus 246 -------------------------------------------------------------------------------- 245 (408)
T d1f1oa_ 246 -------------------------------------------------------------------------------- 245 (408)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccc---cccchHhH
Q psy3416 240 EEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ---EDKLPLFD 316 (455)
Q Consensus 240 ~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~l~~ 316 (455)
+++..++|||||||||||+.+|.++++++.+.|....++ .++|.+|+||.+ ..|..+++
T Consensus 246 ---------------~~~~~~~GSSiMP~K~NP~~~E~v~~~~~~~~g~~~~~~---~~~~~~~erd~~~~~~~~~~l~~ 307 (408)
T d1f1oa_ 246 ---------------FFAKGQKGSSAMPHKRNPIGSENMTGMARVIRGYMMTAY---ENVPLWHERDISHSSAERIILPD 307 (408)
T ss_pred ---------------cccCCCCCcccccccccccHHHHHHHHhccchhhHHHHH---HhccchhhccchhhHHHhhcchh
Confidence 233355667777777777777777777777777765544 456889999976 45778999
Q ss_pred HHHHHHHHHHHHHHhHhhhcCCHHHHHHHh--ccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhHH
Q psy3416 317 TVDNIIMCLVASGKLIEKATFNEQEMYETA--IKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLA 394 (455)
Q Consensus 317 ~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l--~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~~ 394 (455)
++..+..++..+..++++|+||+++|++|+ ..|++++|++++.|+++|+|||+||++|++++++|.++|+++.|++.+
T Consensus 308 ~~~~~~~~l~~~~~~l~~l~vn~e~m~~nl~~~~~~~~a~~~~~~Lv~~gl~~~~Ah~~v~~~~~~a~~~~~~l~e~l~~ 387 (408)
T d1f1oa_ 308 ATIALNYMLNRFSNIVKNLTVFPENMKRNMDRTLGLIYSQRVLLALIDTGLTREEAYDTVQPKAMEAWEKQVPFRELVEA 387 (408)
T ss_pred HHHHHHHHHHHHHHHhhCCeeCHHHHHHHHHhhcCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHc
Confidence 999999999999999999999999999998 478999999999999999999999999999999999999999999886
Q ss_pred HHhhhhcCCc-hHHHHhcChh
Q psy3416 395 ELKTFHSYIS-DDIIDILCIE 414 (455)
Q Consensus 395 ~~~~~~~~~~-~~l~~~ldp~ 414 (455)
+ +++...++ +++.++|||.
T Consensus 388 ~-~~i~~~Ls~eel~~~lDp~ 407 (408)
T d1f1oa_ 388 E-EKITSRLSPEKIADCFDYN 407 (408)
T ss_pred c-HHhhcCCCHHHHHHhcCCC
Confidence 5 56666665 5899999994
No 7
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]}
Probab=100.00 E-value=1.2e-58 Score=480.21 Aligned_cols=323 Identities=20% Similarity=0.218 Sum_probs=272.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..+++.|.++|++|++|+|+||||+|||+||||||++++|+++|.|+++||..++++++
T Consensus 96 i~~ta~~l~~~~~~~~l~~~l~~l~~~l~~~a~~~~~t~m~grTh~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~~~~ 175 (429)
T d1c3ca_ 96 VLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLERAIEEVS 175 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCeeecchHhhcccCCchhHHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcchHH-HHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceeccc
Q psy3416 81 ISPLGSAALAGTTHHINRYL-TAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP 159 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~~~-~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~ 159 (455)
.+++||+++++...+.+... ....+|+.... + .+|+.+||++++++++|+.++++|+|||+|+++|+++|++|+.+|
T Consensus 176 ~~~~gga~g~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~rd~~~e~~~~l~~~~~~L~kia~Dl~~~~~~e~gev~e~ 253 (429)
T d1c3ca_ 176 YGKISGAVGNYANVPPEVEEKALSYLGLKPEP-V-STQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEP 253 (429)
T ss_dssp EECCCCTTSSCSSSCHHHHHHHHHHTTCEECS-S-CSSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECC
T ss_pred hcccccccccccccchhHHHHHHHhhcCCccc-c-chHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEeec
Confidence 99999998777766655443 45555554433 2 279999999999999999999999999999999999999998776
Q ss_pred C-CCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy3416 160 E-SFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRI 238 (455)
Q Consensus 160 e-~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~ 238 (455)
. ..++||
T Consensus 254 ~~~~~~GS------------------------------------------------------------------------ 261 (429)
T d1c3ca_ 254 FRKGQRGS------------------------------------------------------------------------ 261 (429)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred cccCCCCc------------------------------------------------------------------------
Confidence 3 234444
Q ss_pred HHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccc---ccchHh
Q psy3416 239 SEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQE---DKLPLF 315 (455)
Q Consensus 239 ~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~---~~~~l~ 315 (455)
|+||||+||+.+|.++++++.+.|...+++ .++|.+|+||+++ .|..++
T Consensus 262 -------------------------S~MP~K~NPv~~E~i~~~a~~~~g~~~~~~---~~~~~~~erd~~~~~~~~~~~~ 313 (429)
T d1c3ca_ 262 -------------------------SAMPHKKNPITCERLTGLSRMMRAYVDPSL---ENIALWHERDISHSSVERYVFP 313 (429)
T ss_dssp -------------------------CCCTTCCCCHHHHHHHHHHHHHHHTHHHHH---HTTCCSTTCCSHHHHHHHHHHH
T ss_pred -------------------------cccccccCCchHHHHHHHHHHhcccHHHHH---Hhcchhhcccchhhhccccccc
Confidence 555555555555555556666666655543 4568899999754 677889
Q ss_pred HHHHHHHHHHHHHHHhHhhhcCCHHHHHHHh--ccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhhH
Q psy3416 316 DTVDNIIMCLVASGKLIEKATFNEQEMYETA--IKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSL 393 (455)
Q Consensus 316 ~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l--~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~~ 393 (455)
+++..+..++..+..++++|+||+++|++|+ +.|+++||++++.|+++|+|||+||++|++++++|.++|+++.|++.
T Consensus 314 ~~~~~~~~~l~~~~~~i~~L~vn~erm~~nl~~s~g~i~Ae~~~~~Lv~~gl~~~~AheiV~~~a~~a~~~~~~l~d~l~ 393 (429)
T d1c3ca_ 314 DATQTLYYMIVTATNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLL 393 (429)
T ss_dssp HHHHHHHHHHHHHHHHHHHCEECHHHHHHHHTTTTTGGGHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTSSSCHHHHHH
T ss_pred hhHHHHHhHhhHHHHHhhccccchHHHHHHHHhhcCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCCHHHHHh
Confidence 9999999999999999999999999999998 46899999999999999999999999999999999999999999988
Q ss_pred HHHhhhhcCCc-hHHHHhcChhhhhhhhccCCCCcHHHHHH
Q psy3416 394 AELKTFHSYIS-DDIIDILCIENSIKFKNHIGGTSPEQVKI 433 (455)
Q Consensus 394 ~~~~~~~~~~~-~~l~~~ldp~~~v~~~~~~~G~a~~~v~~ 433 (455)
++ +++...++ +++.++|||++ |+|...+.++|
T Consensus 394 ~d-~~~~~~ls~eel~~lldP~~-------ylg~~~~i~~r 426 (429)
T d1c3ca_ 394 ED-EEVKKLVTKEELEELFDISY-------YLKHVDHIFER 426 (429)
T ss_dssp TC-HHHHTTCCHHHHHHTTCTHH-------HHTTHHHHHHT
T ss_pred cC-hhhhccCCHHHHHHHcCHHH-------HHhHHHHHHHH
Confidence 75 46666665 58999999995 77776665554
No 8
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]}
Probab=100.00 E-value=6.3e-55 Score=455.22 Aligned_cols=309 Identities=20% Similarity=0.251 Sum_probs=265.1
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.|..|+++|.++|++|++||||||||+|||+|||||||+++|+++|.|+++||.+++++++
T Consensus 140 i~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~~~~~tvm~GRTHlQ~A~PiTfG~~~~~~~~~l~r~~~RL~~~~~~l~ 219 (462)
T d1j3ua_ 140 AFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYARVIARDIERIANTRNNLY 219 (462)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHTTGGGS
T ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhccccchhHHhCccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcCcch------HHHHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCc
Q psy3416 81 ISPLGSAALAGTTHHINR------YLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQF 153 (455)
Q Consensus 81 ~~~lGga~~~G~~~~~~~------~~~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei 153 (455)
.+|+||+++++...+.+. ..+...+|+.. +..|.++|+++||+++|++++|+.++++++|||+|+++|++.|+
T Consensus 220 ~~~lGg~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Di~ll~s~e~ 299 (462)
T d1j3ua_ 220 DINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPR 299 (462)
T ss_dssp EECTTCTTTSSCTTCCHHHHHHHHHHHHHHHCSCCEECSSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCST
T ss_pred hhhccccccccccCCcchhhhhhhHhHhhhhccccccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence 999999987444333221 24556677664 66788999999999999999999999999999999999998887
Q ss_pred ceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHH
Q psy3416 154 NFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVM 233 (455)
Q Consensus 154 ~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~ 233 (455)
+++.++
T Consensus 300 ~~i~E~-------------------------------------------------------------------------- 305 (462)
T d1j3ua_ 300 AGLSEI-------------------------------------------------------------------------- 305 (462)
T ss_dssp TSCCCE--------------------------------------------------------------------------
T ss_pred cceeee--------------------------------------------------------------------------
Confidence 765321
Q ss_pred HHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccch
Q psy3416 234 HLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLP 313 (455)
Q Consensus 234 ~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~ 313 (455)
.+| ..++|||||||||||+++|.++++++++.|...+++......++.||.+.+..+..
T Consensus 306 --------------------~~~-~~~~GSSiMP~KrNP~~~E~v~~~a~~v~G~~~~~~~~~~~~~~e~~~~~~~~~~~ 364 (462)
T d1j3ua_ 306 --------------------VLP-ARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFN 364 (462)
T ss_dssp --------------------ECC-CCSCCCSSCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHHH
T ss_pred --------------------ccc-ccccchhhhccccCChhHhhhhhhHhcccCccchhhhhhhccchhhcccchhhhhh
Confidence 122 25788888999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhhh
Q psy3416 314 LFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLS 392 (455)
Q Consensus 314 l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~~ 392 (455)
+++++..+..++..+. .++++|+||+++|++|+..++.++++|+.++ ++++||+ ++++|.++|+++.|+.
T Consensus 365 ~~~~~~~l~~~~~~~~~~~l~gl~vn~erm~~~l~~s~~l~taLa~~i-----g~~~A~~----i~~~A~~~g~~l~e~~ 435 (462)
T d1j3ua_ 365 LIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHV-----GYETAAK----LAREAYLTGESIRELC 435 (462)
T ss_dssp HHHHHHHHHHHHHHHHHTTGGGCEECHHHHHHHHHTCTTGGGGTGGGS-----HHHHHHH----HHHTTTTSCCCHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcCccHHHHhhHHH-----HHHHHHH----HHHHHHHhCCCHHHHH
Confidence 9999999888888876 6999999999999999988888888766655 3345655 4567888999999987
Q ss_pred HHHHhhhhcCCc-hHHHHhcChhhhhh
Q psy3416 393 LAELKTFHSYIS-DDIIDILCIENSIK 418 (455)
Q Consensus 393 ~~~~~~~~~~~~-~~l~~~ldp~~~v~ 418 (455)
.+. ..++ +++.++|||++++.
T Consensus 436 ~~~-----~~Ls~eeld~lldP~~~~~ 457 (462)
T d1j3ua_ 436 IKY-----GVLTEEQLNEILNPYEMIH 457 (462)
T ss_dssp HTT-----CSSCHHHHHHHSCTTGGGS
T ss_pred HHc-----CCCCHHHHHHhcCHHHhcC
Confidence 752 3444 58999999998765
No 9
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=4.6e-53 Score=440.08 Aligned_cols=302 Identities=19% Similarity=0.272 Sum_probs=260.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+++.|..|+++|.++|++|++|+|+||||+|||+||||||+|++|+++|.|+++||.+++++++
T Consensus 147 i~~Ta~~L~~~~~l~~L~~~L~~L~~~L~~~A~~~~~tvm~GRTHlQ~A~PiTfG~~~~~~~~~l~r~~~rl~~~~~~l~ 226 (459)
T d1jswa_ 147 AYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLKEEVKNIQRTAELLL 226 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCEEECCGGGSCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeeecHhhcccCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCCCCcC-------cchHHHHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Q psy3416 81 ISPLGSAALAGTTHH-------INRYLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 152 (455)
Q Consensus 81 ~~~lGga~~~G~~~~-------~~~~~~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~e 152 (455)
.+|+||+++ |++.. .+...+++.+|+.. +..|.++|+++||++++++++|+.++.+|+|||+|+++|++.+
T Consensus 227 ~~~lGg~A~-gt~~~~~~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dlrll~s~e 305 (459)
T d1jswa_ 227 EVNLGATAI-GTGLNTPKEYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGP 305 (459)
T ss_dssp EECCSCCSS-SSCSSCTTTHHHHHHHHHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCST
T ss_pred hcccccccc-ccccccccchhHHHHHHHHHhccccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999987 33332 22356888999884 5667789999999999999999999999999999999999887
Q ss_pred cceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHH
Q psy3416 153 FNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIV 232 (455)
Q Consensus 153 i~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~ 232 (455)
++++.+
T Consensus 306 ~~~l~E-------------------------------------------------------------------------- 311 (459)
T d1jswa_ 306 RAGLNE-------------------------------------------------------------------------- 311 (459)
T ss_dssp TTSCCC--------------------------------------------------------------------------
T ss_pred eeccee--------------------------------------------------------------------------
Confidence 766522
Q ss_pred HHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccccccc
Q psy3416 233 MHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKL 312 (455)
Q Consensus 233 ~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 312 (455)
+.+|+ .++||||||||+||+++|.++++++++.|...++....+..++.+|.+.+..+.
T Consensus 312 --------------------~~lp~-~q~GSSiMP~K~NPv~~E~v~~~~~~v~g~~~~i~~~~~~~~~e~n~~~~~~~~ 370 (459)
T d1jswa_ 312 --------------------INLPE-LQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNVMEPVIGQ 370 (459)
T ss_dssp --------------------EECCC-CSCCCSSCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCTTHHHHHH
T ss_pred --------------------ccchh-hccccHHHHHHHhhhhHhhHHHhhccccccccchhhhhhccCccchhhHHHHHH
Confidence 22332 578888888889999999999999999999999999999999999999988888
Q ss_pred hHhHHHHHHH-HHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhh
Q psy3416 313 PLFDTVDNII-MCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDL 391 (455)
Q Consensus 313 ~l~~~~~~~~-~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~ 391 (455)
.+++++..+. .++..+..++++|+||+++|++|+..+..+++.|+..+ .|+.+.++++.|.++|++++|+
T Consensus 371 ~ll~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~LataL~p~i---------G~~~a~~iak~A~~~g~~l~e~ 441 (459)
T d1jswa_ 371 AMFESVHILTNACYNLLEKCINGITANKEVCEGYVYNSIGIVTYLNPFI---------GHHNGDIVGKICAETGKSVREV 441 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCTTCGGGTHHHH---------CHHHHHHHHHHHHTTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhhHHHHHHhcchh---------hhHHHHHHHHHHHHhCCcHHHH
Confidence 8888888765 55666778999999999999999999888888776544 2444566778899999999999
Q ss_pred hHHHHhhhhcCC-chHHHHhcC
Q psy3416 392 SLAELKTFHSYI-SDDIIDILC 412 (455)
Q Consensus 392 ~~~~~~~~~~~~-~~~l~~~ld 412 (455)
.++. ..+ ++++.++||
T Consensus 442 ~le~-----~~ls~~eld~ild 458 (459)
T d1jswa_ 442 VLER-----GLLTEAELDDIFS 458 (459)
T ss_dssp HHHH-----TSSCSHHHHTSCC
T ss_pred HHHc-----CCCCHHHHHHhhC
Confidence 8864 234 467888887
No 10
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=100.00 E-value=2.1e-53 Score=442.01 Aligned_cols=303 Identities=19% Similarity=0.228 Sum_probs=253.8
Q ss_pred ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHI-DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~-~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
+++|+++|+++..+ ..+.+.|..|+++|.++|++|++|+||||||+|||+||||||||++|+++|.|+++||.++++++
T Consensus 142 ~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~kA~e~~~~im~GRTHlQ~A~PiT~G~~~~~~~~~l~r~~~RL~~~~~~l 221 (459)
T d1yfma_ 142 TFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQVENGIQRVAHSLKTL 221 (459)
T ss_dssp HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeehhHhhCCcCCCeeHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 47999999997776 57999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCC--cCcc-----hHHHHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy3416 80 NISPLGSAALAGTT--HHIN-----RYLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNP 151 (455)
Q Consensus 80 ~~~~lGga~~~G~~--~~~~-----~~~~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ 151 (455)
+.+|+||+++ |++ .+-+ .+.+++.||+.. +..|.++|+++||+++|++++|+.++.+|+|||+|+++|++.
T Consensus 222 ~~~~lGgta~-gtg~~a~~~~~~~v~~~l~~~lgl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dlrll~s~ 300 (459)
T d1yfma_ 222 SFLAQGGTAV-GTGLNTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSG 300 (459)
T ss_dssp TEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred hhhhcccchh-hccccCCCcchHHHHHHHHHHcCCCCcccCchHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 9999999886 333 2222 136788899985 456889999999999999999999999999999999888764
Q ss_pred C---cceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHH
Q psy3416 152 Q---FNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228 (455)
Q Consensus 152 e---i~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~ 228 (455)
+ ++|+.
T Consensus 301 ~~~g~~El~----------------------------------------------------------------------- 309 (459)
T d1yfma_ 301 PRCGYHELM----------------------------------------------------------------------- 309 (459)
T ss_dssp SSSSCCCEE-----------------------------------------------------------------------
T ss_pred eeeeEEeee-----------------------------------------------------------------------
Confidence 2 22221
Q ss_pred HHHHHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccc
Q psy3416 229 CLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ 308 (455)
Q Consensus 229 ~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~ 308 (455)
+| ..++||||||||+||+++|.++++++++.|...++....+..++.+|.+.+
T Consensus 310 --------------------------~~-~~~~GSSiMP~K~NPv~~E~v~~~~~~v~G~~~~i~~~~~~~~~e~n~~~~ 362 (459)
T d1yfma_ 310 --------------------------LP-ENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFELNVFKP 362 (459)
T ss_dssp --------------------------CC-CCSCCCTTSTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCBTTBCSCHH
T ss_pred --------------------------cc-cccccCcccccccChhhHHHHHHHHHHhccHhhHHHHHHhcCcccccchhh
Confidence 22 257888888888999999999999999999999998888889999999988
Q ss_pred cccchHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCC
Q psy3416 309 EDKLPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKT 387 (455)
Q Consensus 309 ~~~~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~ 387 (455)
.....+++++..+.+++..+. .++++|+||+++|++|+.++++++|+|+.. ++|+.||+ ++++|.++|++
T Consensus 363 ~~~~~~l~s~~~l~~~~~~~~~~~i~gl~vn~erm~~~l~~s~~l~taL~~~-----iGy~~A~~----ia~~a~~~g~~ 433 (459)
T d1yfma_ 363 VMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPK-----IGYDAASK----VAKNAHKKGIT 433 (459)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHHHCSGGGTTTGGG-----TCHHHHHH----HHHHHHHHTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCEECHHHHHHHHHhCccHHHHhcch-----hhHHHHHH----HHHHHHHhCCC
Confidence 888888888888777666665 699999999999999999998888765543 34555555 55566678999
Q ss_pred chhhhHHHHhhhhcCCc-hHHHHhcChhhh
Q psy3416 388 FKDLSLAELKTFHSYIS-DDIIDILCIENS 416 (455)
Q Consensus 388 ~~e~~~~~~~~~~~~~~-~~l~~~ldp~~~ 416 (455)
++|+..+. ..++ +++.+++||+++
T Consensus 434 lre~~~~~-----~~Ls~~eld~lldP~~~ 458 (459)
T d1yfma_ 434 LKESALEL-----GVLTEKEFDEWVVPEHM 458 (459)
T ss_dssp HHHHHHHT-----TSCCHHHHHHHCCGGGC
T ss_pred HHHHHHHh-----CCCCHHHHHHHcCHHHh
Confidence 99987753 3444 689999999863
No 11
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Probab=100.00 E-value=2.4e-53 Score=442.54 Aligned_cols=307 Identities=18% Similarity=0.183 Sum_probs=247.0
Q ss_pred ChHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHID-IIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~-~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
+++|+++|++++++. .+.+.|..|+++|.++|++|++|+|+||||+|||+||||||+|++|+++|.|+++||.++++++
T Consensus 140 ~~~Ta~~l~~~~~l~~~l~~~L~~L~~~L~~~A~~~~~t~m~GRTHlQ~A~PiT~G~~~a~~~~~l~r~~~RL~~~~~~l 219 (460)
T d1vdka_ 140 TFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQLKTTLAAVKEMEKGL 219 (460)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCeeehhhhhcccccCccHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 479999999999986 6899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCc-------chHHHHHhcCCCC-CCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy3416 80 NISPLGSAALAGTTHHI-------NRYLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNP 151 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~-------~~~~~a~~LG~~~-~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ 151 (455)
+.+++||+++ |++... ..+++++.|||+. +..|.++|+++||++++++++++.++++|+|||+|+++|++.
T Consensus 220 ~~~~lGGaAv-Gt~~~~~~~~~~~~~~~la~~lGl~~~~~~n~~~~~~~rD~~~e~~~~l~~la~~L~Kia~Dir~l~s~ 298 (460)
T d1vdka_ 220 YNLAIGGTAV-GTGLNAHPRFGELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASG 298 (460)
T ss_dssp GEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHSSCCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCB
T ss_pred hhhcCCCccc-cccccccchhHHHHHHHHHHHhCcCccccCCchhheecchhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999875 443322 2357899999985 457889999999999999999999999999999999999998
Q ss_pred CcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHH
Q psy3416 152 QFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLI 231 (455)
Q Consensus 152 ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~ 231 (455)
+++++.++
T Consensus 299 e~~~i~E~------------------------------------------------------------------------ 306 (460)
T d1vdka_ 299 PYAGIGEI------------------------------------------------------------------------ 306 (460)
T ss_dssp SSSSCCSE------------------------------------------------------------------------
T ss_pred hhceehhh------------------------------------------------------------------------
Confidence 87765332
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccc-cc
Q psy3416 232 VMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ-ED 310 (455)
Q Consensus 232 ~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~-~~ 310 (455)
.+|. .+.|||+|||||||+.+|.++++++++.|...++.......++.+|.+.. ..
T Consensus 307 ----------------------~~~~-~q~GSSiMP~K~NPv~~E~v~~~~~~v~g~~~~i~~~~~~~~~e~n~~~~~~~ 363 (460)
T d1vdka_ 307 ----------------------TIPA-NEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKPVMA 363 (460)
T ss_dssp ----------------------ECCC-CSCCSSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCBTTBCSCHHHHH
T ss_pred ----------------------hccc-ccCCCccccccCCCcHHHHHhhhhHHHHHHHHHHHHHHcCCCccccccchHHH
Confidence 1221 45677777777777777778888888888888776665544444444433 34
Q ss_pred cchHhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchh
Q psy3416 311 KLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKD 390 (455)
Q Consensus 311 ~~~l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e 390 (455)
|..++.....++.++.....++++|+||+++|++|+.+++++++.|+. +++|++||++|++ |.++|+++.|
T Consensus 364 ~~~l~~~~~l~~~~~~~~~~~~~gl~vn~~rm~~~l~~s~~l~taLa~-----~ig~~~A~eiv~~----A~~~~~~l~e 434 (460)
T d1vdka_ 364 YSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALNK-----AIGYDKAAEIVKK----ALKEKKTLKQ 434 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCGGGGHHHHH-----HHCSHHHHTTTTT----SCC--CCHHH
T ss_pred HhhhhHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHcChhHHHHHhc-----CCCHHHHHHHHHH----HHHhCCCHHH
Confidence 545555555555555556689999999999999999999888876654 4688999987664 6778999998
Q ss_pred hhHHHHhhhhcCCc-hHHHHhcChhhhh
Q psy3416 391 LSLAELKTFHSYIS-DDIIDILCIENSI 417 (455)
Q Consensus 391 ~~~~~~~~~~~~~~-~~l~~~ldp~~~v 417 (455)
+..+. .+++ +++.++|||++++
T Consensus 435 ~~~~~-----~~ls~eeld~~ldP~~~~ 457 (460)
T d1vdka_ 435 AALEL-----GYLTEEEFDRIVVPMRLA 457 (460)
T ss_dssp HHHHT-----SSSCHHHHHHHCCHHHHH
T ss_pred HHHHc-----CCCCHHHHHHhCCHHHhC
Confidence 87752 4455 5899999999754
No 12
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Probab=100.00 E-value=5.7e-53 Score=439.51 Aligned_cols=305 Identities=18% Similarity=0.191 Sum_probs=255.6
Q ss_pred ChHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 1 MIVTDLRLYTRKHI-DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 1 ~~~ta~~L~lr~~~-~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
+++|+++++.+..+ +.+.+.|..|+++|.++|++|++||||||||+|||+||||||||++|+++|.|+++||.++++++
T Consensus 140 ~~~ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~GrTHlQ~A~PiTfG~~~~~~~~~l~R~~~RL~~~~~r~ 219 (456)
T d1fuoa_ 140 VFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWVAMLEHNLKHIEYSLPHV 219 (456)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTTTCEECCEETTEECCCEEHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcCceeccHHhcCCCCCEehHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 36889888765555 67999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCccccCCCCcCcchH-------HHHHhcCCC-CCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC
Q psy3416 80 NISPLGSAALAGTTHHINRY-------LTAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNP 151 (455)
Q Consensus 80 ~~~~lGga~~~G~~~~~~~~-------~~a~~LG~~-~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ 151 (455)
+.+|+||+++ |++.+.++. .++..++++ .+..|+++|+++||+++|++++++.++++++|||+|+++|+++
T Consensus 220 ~~~~lGGaa~-Gt~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~~~~~~rD~~~e~~~~la~la~~L~kia~Di~ll~s~ 298 (456)
T d1fuoa_ 220 AELALGGTAV-GTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIANDVRWLASG 298 (456)
T ss_dssp TEECTTCTTT-SSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC
T ss_pred HHhCCCCCcc-cCccccChHHHHHHHHHhhhcccCCceeccCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 9999999876 666665542 345555655 3568899999999999999999999999999999999999987
Q ss_pred CcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHH
Q psy3416 152 QFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLI 231 (455)
Q Consensus 152 ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~ 231 (455)
+++|+..
T Consensus 299 ~~~e~~e------------------------------------------------------------------------- 305 (456)
T d1fuoa_ 299 PRCGIGE------------------------------------------------------------------------- 305 (456)
T ss_dssp SSSSCCC-------------------------------------------------------------------------
T ss_pred hhcchhh-------------------------------------------------------------------------
Confidence 7665421
Q ss_pred HHHHHHHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhccccccccc
Q psy3416 232 VMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDK 311 (455)
Q Consensus 232 ~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~ 311 (455)
+.+|+ .++|||||||||||+.+|.++++++++.|++.++.......++.+|.+.+...
T Consensus 306 ---------------------~~~~~-~~~GSSiMP~K~NP~~~E~i~~~a~~v~g~~~~i~~~~~~~~~e~n~~~~~~~ 363 (456)
T d1fuoa_ 306 ---------------------ISIPE-NEPGSSIMPGKVNPTQCEALTMLCCQVMGNDVAINMGGASGNFELNVFRPMVI 363 (456)
T ss_dssp ---------------------EECCC-CSCCCTTCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCBTTBCCCHHHHH
T ss_pred ---------------------hcccc-ccccchhcccccCchhHHHHHHHHHHhcchhhHHHHHHhcCchhhcccchHHH
Confidence 12232 46788888888888889999999999999999988888888889998888877
Q ss_pred chHhHHHHHHHHHHHHHH-HhHhhhcCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchh
Q psy3416 312 LPLFDTVDNIIMCLVASG-KLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKD 390 (455)
Q Consensus 312 ~~l~~~~~~~~~~l~~~~-~~l~~l~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e 390 (455)
..++++++.+.+++..+. .++++|+||+++|++|+.++++++++|+. .++|++||+++.+ |.++|++++|
T Consensus 364 ~~~l~~~~~l~~~~~~~~~~~i~~l~vn~e~m~~~l~~s~~l~taLa~-----~iG~~~A~eia~~----a~~~g~~lre 434 (456)
T d1fuoa_ 364 HNFLQSVRLLADGMESFNKHCAVGIEPNRERINQLLNESLMLVTALNT-----HIGYDKAAEIAKK----AHKEGLTLKA 434 (456)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTGGGCEECHHHHHHHHTTCSTTHHHHHT-----TSCHHHHHHHHHH----HHHHTCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCEECHHHHHHHHHhchhHHHHhcc-----cccHHHHHHHHHH----HHHhCCCHHH
Confidence 778888888777777665 69999999999999999999888886543 4688899987655 5567999998
Q ss_pred hhHHHHhhhhcCCc-hHHHHhcChhh
Q psy3416 391 LSLAELKTFHSYIS-DDIIDILCIEN 415 (455)
Q Consensus 391 ~~~~~~~~~~~~~~-~~l~~~ldp~~ 415 (455)
+..+ ..+++ +++.+++||++
T Consensus 435 ~~~~-----~~~ls~eeld~~ldP~~ 455 (456)
T d1fuoa_ 435 AALA-----LGYLSEAEFDSWVRPEQ 455 (456)
T ss_dssp HHHH-----TTSSCHHHHHHHCCGGG
T ss_pred HHHH-----hCCCCHHHHHHhCChhh
Confidence 8664 23454 68999999986
No 13
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=100.00 E-value=1.2e-52 Score=431.50 Aligned_cols=289 Identities=17% Similarity=0.162 Sum_probs=237.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3416 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80 (455)
Q Consensus 1 ~~~ta~~L~lr~~~~~l~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~ 80 (455)
|++|+++|++|+++..+.+.+..++++|.++|++|++|+||||||+|||+||||||++++|+++|.|+++||....+ +.
T Consensus 98 i~~ta~~l~~r~~~~~l~~~l~~l~~~L~~~a~~~~~t~m~grTH~Q~A~P~T~G~~~~~~~~~l~r~~~rl~~~~~-~~ 176 (402)
T d1dofa_ 98 IIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIACRQLALAEE-FI 176 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEEEEETTEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHH-HC
T ss_pred hhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhcccchhhHhhccccccchHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999977655 55
Q ss_pred ccCCCccccCCCCc-Ccch---HHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCccee
Q psy3416 81 ISPLGSAALAGTTH-HINR---YLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 156 (455)
Q Consensus 81 ~~~lGga~~~G~~~-~~~~---~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el 156 (455)
.+++||+++++.++ +.++ ..++..+|+..+.. .+|+++||++++++++|+.++++++|||+|+++|+++|+||+
T Consensus 177 ~~~~gGa~g~~~~~~~~~~~~~~~l~~~lgl~~~~~--~~~~~~rd~~~e~~~~L~~~a~~L~kia~Di~~~s~~e~ge~ 254 (402)
T d1dofa_ 177 RAKIGGAVGTMASWGELGLEVRRRVAERLGLPHHVI--TTQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIGEV 254 (402)
T ss_dssp CBCCCCTTSSCGGGGGGHHHHHHHHHHHTTCCBCSS--CSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSE
T ss_pred hhcccccccccccccchhhHHHHHHHHHhcccccch--hhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccc
Confidence 67888887654443 3333 35777788875443 368999999999999999999999999999999999999986
Q ss_pred cccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHH
Q psy3416 157 TLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLS 236 (455)
Q Consensus 157 ~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~ 236 (455)
.. .++|||+|
T Consensus 255 ~e---~~~GSS~M------------------------------------------------------------------- 264 (402)
T d1dofa_ 255 VE---GGGGSSAM------------------------------------------------------------------- 264 (402)
T ss_dssp ES---CC-------------------------------------------------------------------------
T ss_pred cc---ccCccccc-------------------------------------------------------------------
Confidence 32 23445555
Q ss_pred HHHHHHHhhhccccccccccccccccCccCccccChhHHHHHHhhhhhhhhhhHHHHHhhhcchhhcccccc---cccch
Q psy3416 237 RISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ---EDKLP 313 (455)
Q Consensus 237 ~~~~d~~~~~s~~~~~~~lp~~~~~~SS~mp~K~np~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~~ 313 (455)
|||+||+.+|.++++++.+.|..... +..++..|+||++ ..|..
T Consensus 265 ------------------------------P~K~NP~~~E~i~~~a~~~~g~~~~~---~~~~~~~~erd~~~~~~~~~~ 311 (402)
T d1dofa_ 265 ------------------------------PHKANPTASERIVSLARYVRALTHVA---FENVALWHERDLTNSANERVW 311 (402)
T ss_dssp ---------------------------------CCCHHHHHHHHHHHHHHHHHHHH---HHTTCCCTTCCGGGHHHHHHH
T ss_pred ------------------------------cCCCCchHHHHHhchHHHHHHHHHHH---HHhhcccccccchhhhhhhhc
Confidence 55555555555555555666654332 3355678888864 45678
Q ss_pred HhHHHHHHHHHHHHHHHhHhhhcCCHHHHHHHhc--cCHhHHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCCchhh
Q psy3416 314 LFDTVDNIIMCLVASGKLIEKATFNEQEMYETAI--KGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDL 391 (455)
Q Consensus 314 l~~~~~~~~~~l~~~~~~l~~l~v~~~~m~~~l~--~~~~~a~~la~~L~~~g~~~r~Ah~~v~~~~~~a~~~g~~~~e~ 391 (455)
+++++..+..++..+..++++|+||+++|++|+. .|+++++.+++.|+++|+|||+||++|+++++.+.++|+++.|.
T Consensus 312 l~~~~~~~~~~l~~~~~~l~~l~vn~erm~~~l~~s~~~i~ae~~~~~L~~~gl~~~~Ah~~v~~~~~~a~e~~k~~~e~ 391 (402)
T d1dofa_ 312 IPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPVER 391 (402)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCEECHHHHHHHHHHHHHHHCHHHHHHHHHHTTCCHHHHHHHHTTCCCCCCGGGGCCHHH
T ss_pred cchhHHHHHHHHHHHHHHHccCEECHHHHHHHHHhhcChhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCChHHH
Confidence 9999999999999999999999999999999984 57899999999999999999999999999999999999999998
Q ss_pred hHHH
Q psy3416 392 SLAE 395 (455)
Q Consensus 392 ~~~~ 395 (455)
+.++
T Consensus 392 l~~d 395 (402)
T d1dofa_ 392 LIED 395 (402)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 8765
No 14
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin {Human (Homo sapiens) [TaxId: 9606]}
Probab=98.88 E-value=6.5e-09 Score=106.22 Aligned_cols=175 Identities=23% Similarity=0.256 Sum_probs=123.4
Q ss_pred HHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHh
Q psy3416 25 IKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKL 104 (455)
Q Consensus 25 ~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~ 104 (455)
...+.+...+..+.++.||| .||..||.+-.++......+...+..|...+..... .....++.|.++..+-
T Consensus 88 e~~l~~~~g~~~~~vH~G~S-~nD~~~Ta~~L~~r~~l~~l~~~l~~l~~~L~~~A~-~~~~t~m~GrTH~Q~A------ 159 (459)
T d1k62b_ 88 ERRLKELIGATAGKLHTGRS-RNDQVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAE-AERDVLFPGYTHLQRA------ 159 (459)
T ss_dssp HHHHHHTTSSGGGGTTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE------
T ss_pred HHHHHHhhhhcccccCCCCC-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ccccceecceeecccC------
Confidence 34455666667788999999 999999999999999999999999998888877754 4566666676654431
Q ss_pred cCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHH
Q psy3416 105 LDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRA 184 (455)
Q Consensus 105 LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~ 184 (455)
.|. +++ ..+..+...+.-.+.|+.+-...+... |-+ ++
T Consensus 160 ----~P~--T~G--------~~~~~~~~~l~r~~~rl~~~~~~~~~~-------~lG---------------------g~ 197 (459)
T d1k62b_ 160 ----QPI--RWS--------HWILSHAVALTRDSERLLEVRKRINVL-------PLG---------------------SG 197 (459)
T ss_dssp ----EEE--EHH--------HHHHHHHHHHHHHHHHHHHHHHHHSCB-------CTT---------------------CT
T ss_pred ----CCe--eHH--------HHHHHHHHHHHHHHHHHHHHHHHhhhh-------hcc---------------------cc
Confidence 011 110 111222222222233332211111111 110 23
Q ss_pred HhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3416 185 ALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 249 (455)
Q Consensus 185 ~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~ 249 (455)
+..|+++++++.+.+..++|.++..|+++++++||++.+++.++++++.+|+|||+|+++|++++
T Consensus 198 a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~sRd~~~e~~~~l~~l~~~l~ria~Dl~l~~~~e 262 (459)
T d1k62b_ 198 AIAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILYCTKE 262 (459)
T ss_dssp TTTCCTTCCCHHHHHHHTTCSCBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred cCCCCCcccchhhhhhHHhhccccccchhhhhcchHHHHHHHHHhHHHHHHHHHHHHHHHhcccc
Confidence 44566778888889999999999999999999999999999999999999999999999998864
No 15
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Domestic duck (Anas platyrhynchos), delta-crystallin [TaxId: 8839]}
Probab=98.88 E-value=6.8e-09 Score=105.73 Aligned_cols=176 Identities=26% Similarity=0.338 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHH
Q psy3416 24 MIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAK 103 (455)
Q Consensus 24 l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~ 103 (455)
+...|.++.-+..+.+..||| .||-.||.+-.++......+...+.+|.+.+..... .....++.|.++..+-
T Consensus 76 ie~~l~e~~G~~~~~vh~G~S-~nD~~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~A~-~~~~t~~~GrTH~Q~A----- 148 (449)
T d1tjva_ 76 NERRLKELIGDIAGKLHTGRS-RNDQVVTDLKLFMKNSLSIISTHLLQLIKTLVERAA-IEIDVILPGYDHLQKA----- 148 (449)
T ss_dssp HHHHHHHHHCGGGGGGGTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE-----
T ss_pred HHHHHHHHhChhhhhcCcCCC-ccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHH-hhhccchhhhhhhhcc-----
Confidence 456677777788899999999 999999999999999999999999998888877655 4556666676654431
Q ss_pred hcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHH
Q psy3416 104 LLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQR 183 (455)
Q Consensus 104 ~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~ 183 (455)
.|. +++ ..+..+...+.-.+.|+..-...+. .. |-+ +
T Consensus 149 -----~P~--T~G--------~~~~~~~~~l~r~~~rl~~~~~~~~-----~~--~lG---------------------g 185 (449)
T d1tjva_ 149 -----QPI--RWS--------QFLLSHAVALTRDSERLGEVKKRIN-----VL--PLG---------------------S 185 (449)
T ss_dssp -----EEE--EHH--------HHHHHHHHHHHHHHHHHHHHHHHHS-----EE--CTT---------------------C
T ss_pred -----CCc--cHH--------HHHHHHHHHHHHHHHHHHHHHHHhh-----hh--ccc---------------------c
Confidence 011 111 1222233333333333322111111 11 111 1
Q ss_pred HHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3416 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 249 (455)
Q Consensus 184 ~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~ 249 (455)
++..|+.++.++.+++..++|.++..|+++++++||++.++++++++++.+|+|||+|+++|++++
T Consensus 186 ~a~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~rd~~~e~~~~l~~la~~L~kia~Dl~l~~~~e 251 (449)
T d1tjva_ 186 GALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAEDLIIYSTSE 251 (449)
T ss_dssp TTTTCCTTCCCHHHHHHHHTCSEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred cccccccchhhHHHHHHHHhhhcccCCccchhhccchHHHHHHHHHHHHHhHHHHHHHHHHHhcCc
Confidence 233456677778888999999999999999999999999999999999999999999999998864
No 16
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin {Escherichia coli [TaxId: 562]}
Probab=98.84 E-value=8.9e-09 Score=105.03 Aligned_cols=177 Identities=25% Similarity=0.291 Sum_probs=126.2
Q ss_pred HHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHH
Q psy3416 23 TMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTA 102 (455)
Q Consensus 23 ~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a 102 (455)
.+...|.++..+..+.+..||| .||-.||.+-.++......+.+.+..|...+..... ....+++.|.++..+.
T Consensus 85 ~ie~~l~~~~g~~~~~vH~G~S-~nD~~~Ta~~l~~r~~l~~l~~~l~~l~~~L~~~A~-~~~~~~m~GrTH~Q~A---- 158 (455)
T d1tj7a_ 85 WVEGKLIDKVGQLGKKLHTGRS-RNDQVATDLKLWCKDTVSELLTANRQLQSALVETAQ-NNQDAVMPGYTHLQRA---- 158 (455)
T ss_dssp HHHHHHHHHHGGGGGGTTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTTCEEEEEETTEEE----
T ss_pred HHHHHHHhhcCcchhhccCCcc-chhHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHH-hhhchhhhHHHHhhhc----
Confidence 3456778888888999999999 999999999999999999999999998888877654 4566666676654431
Q ss_pred HhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHH
Q psy3416 103 KLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQ 182 (455)
Q Consensus 103 ~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~ 182 (455)
.|. +++ ..+..+...+.-.+.|+.+=...+... |-+
T Consensus 159 ------~P~--T~G--------~~~~~~~~~l~r~~~rl~~~~~~~~~~-------~lG--------------------- 194 (455)
T d1tj7a_ 159 ------QPV--TFA--------HWCLAYVEMLARDESRLQDALKRLDVS-------PLG--------------------- 194 (455)
T ss_dssp ------EEE--EHH--------HHHHHHHHHHHHHHHHHHHHHHHHCCB-------CTT---------------------
T ss_pred ------cch--HHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHH-------Hhc---------------------
Confidence 011 000 111112222222222222111111110 100
Q ss_pred HHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Q psy3416 183 RAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 249 (455)
Q Consensus 183 ~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~ 249 (455)
+++..|+.++.++.+++..|||..+..|+++++++||++.++++.+++++.+|+|||+|+++|++++
T Consensus 195 ~~a~~g~~~~~~~~~~a~~Lg~~~~~~n~~~~~~~rd~~~e~~~~l~~~~~~L~ria~Dl~l~~s~e 261 (455)
T d1tj7a_ 195 CGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLIFFNTGE 261 (455)
T ss_dssp CTTTTCCSSCCCHHHHHHHHTCSSBCSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTT
T ss_pred ccccccCcCcchHHHHHHHhCCCcccCCccchhhchHHHHHHHHHHHHHHhHHHHHHHHHHHhhhhh
Confidence 1344567788888899999999999999999999999999999999999999999999999999864
No 17
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli [TaxId: 562]}
Probab=98.66 E-value=3.5e-07 Score=93.00 Aligned_cols=177 Identities=15% Similarity=0.139 Sum_probs=117.8
Q ss_pred CcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCchh
Q psy3416 37 KTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLD 116 (455)
Q Consensus 37 ~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~~ 116 (455)
+.|..|+| .||..||.+-.++......|..++.+|.+.+..... .+...++.|.++..+ ..|. +++
T Consensus 136 ~~Vh~G~S-snDi~~Ta~~L~~~~~l~~L~~~L~~L~~~L~~~A~-~~~~tvm~GRTHlQ~----------A~Pi--TfG 201 (459)
T d1jswa_ 136 DHVNKCQS-TNDAYPTGFRIAVYSSLIKLVDAINQLREGFERKAV-EFQDILKMGRTQLQD----------AVPM--TLG 201 (459)
T ss_dssp CCCSCSCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HGGGCEEECCGGGSC----------CCEE--EHH
T ss_pred hhhhccCc-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCeeeecHhhccc----------CcCc--chH
Confidence 56899999 999999999999999999999999999888887754 455666667776554 1121 111
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchhh
Q psy3416 117 SISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINRY 196 (455)
Q Consensus 117 ~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~~ 196 (455)
.++..+...+.-.+.|+-.=.. .+.++.+... .+|+.+.+++.-.... ..
T Consensus 202 --------~~~~~~~~~l~r~~~rl~~~~~-----~l~~~~lGg~-A~gt~~~~~~~~~~~~----------------~~ 251 (459)
T d1jswa_ 202 --------QEFRAFSILLKEEVKNIQRTAE-----LLLEVNLGAT-AIGTGLNTPKEYSPLA----------------VK 251 (459)
T ss_dssp --------HHHHHHHHHHHHHHHHHHHHHH-----HTTEECCSCC-SSSSCSSCTTTHHHHH----------------HH
T ss_pred --------HHHHHHHHHHHHHHHHHHHHHH-----HHHhcccccc-ccccccccccchhHHH----------------HH
Confidence 1223333333333333322111 1222222111 2344444444322111 12
Q ss_pred HHHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccc
Q psy3416 197 LTAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE 257 (455)
Q Consensus 197 ~~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~ 257 (455)
..+..+++. .+..|.++++++||+++++++.++.++.+|+|||+|+++|+++|+.++..++
T Consensus 252 ~l~~~~g~~~~~~~~~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Dlrll~s~e~~~l~E~~ 313 (459)
T d1jswa_ 252 KLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEIN 313 (459)
T ss_dssp HHHHHHCCCCEECSCSSSBTTBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSTTTSCCCEE
T ss_pred HHHHhccccccccchhhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCeecceecc
Confidence 345677777 6688899999999999999999999999999999999999999988765543
No 18
>d1f1oa_ a.127.1.1 (A:) Adenylosuccinate lyase {Bacillus subtilis [TaxId: 1423]}
Probab=98.57 E-value=9.9e-07 Score=88.29 Aligned_cols=182 Identities=15% Similarity=0.197 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchH
Q psy3416 20 LLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY 99 (455)
Q Consensus 20 ~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~ 99 (455)
.+..+.+.|.++..+..+.+..||| .||..||.+..++......+.+.+.+|...+..... ......+.|.++..+
T Consensus 61 ~v~a~~~~L~e~~g~~~~~vH~G~S-snD~~~Ta~~l~lr~~l~~l~~~l~~l~~~L~~~A~-~~~~t~m~grTh~Q~-- 136 (408)
T d1f1oa_ 61 DVVAFTRAVSESLGEERKWVHYGLT-STDVVDTALSYLLKQANDILLKDLERFVDIIKEKAK-EHKYTVMMGRTHGVH-- 136 (408)
T ss_pred cHHHHHHHHHHHcCchhhhhcCCCC-HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH-HhCCccccchHhcCC--
Confidence 4456677777777666778999999 999999999999999999999999998888877654 344555555554332
Q ss_pred HHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHH
Q psy3416 100 LTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKD 179 (455)
Q Consensus 100 ~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e 179 (455)
..|. +++ ..+..+...+.-.+.++..=. ..+.. .|-+
T Consensus 137 --------A~P~--T~G--------~~~~~~~~~l~r~~~rL~~~~-----~~~~~--~~lG------------------ 173 (408)
T d1f1oa_ 137 --------AEPT--TFG--------LKLALWHEEMKRNLERFKQAK-----AGIEV--GKIS------------------ 173 (408)
T ss_pred --------CCCc--cHH--------HHHHHHHHHHHHHHHHHHHHH-----Hhhhc--cccc------------------
Confidence 0111 111 111122222222222221100 00111 0111
Q ss_pred HHHHHHhhcccccch---hhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q psy3416 180 LRQRAALAGTTHHIN---RYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP 256 (455)
Q Consensus 180 ~~~~~~~~gt~~~~~---~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp 256 (455)
+.+||+..++ +...+..+||..+.. ..++++||+.+++...+++++.+++||++|+++|++++++ .+-
T Consensus 174 -----GA~Gt~~~~~~~~~~~~~~~lg~~~~~~--~~~~~~rd~~~e~~~~l~~la~~l~kia~Dl~~~~s~~~~--~~~ 244 (408)
T d1f1oa_ 174 -----GAVGTYANIDPFVEQYVCEKLGLKAAPI--STQTLQRDRHADYMATLALIATSIEKFAVEIRGLQKSETR--EVE 244 (408)
T ss_pred -----hhhhcccCCChhHHHHHHHHhcCcCCCc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--eee
Confidence 1233333333 334667788875543 3578899999999999999999999999999999998654 344
Q ss_pred c
Q psy3416 257 E 257 (455)
Q Consensus 257 ~ 257 (455)
|
T Consensus 245 e 245 (408)
T d1f1oa_ 245 E 245 (408)
T ss_pred e
Confidence 4
No 19
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp., ym55-1 [TaxId: 1409]}
Probab=98.53 E-value=6e-07 Score=91.34 Aligned_cols=182 Identities=11% Similarity=0.082 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHhcC-------------cccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccC
Q psy3416 24 MIKHLTDLSDKHAK-------------TIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALA 90 (455)
Q Consensus 24 l~~~L~~~A~~~~~-------------tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~ 90 (455)
+.+.+.+++.+... .|..||| .||-.||.+-.++......+.+.+.+|.+.+..... .+-..++.
T Consensus 103 ~~e~i~~~~~~~~g~~~g~~~~~~p~~~vH~G~S-snDi~~Ta~~L~lr~~l~~l~~~l~~l~~~L~~~A~-~~~~tvm~ 180 (462)
T d1j3ua_ 103 ANEVIANRALELMGEEKGNYSKISPNSHVNMSQS-TNDAFPTATHIAVLSLLNQLIETTKYMQQEFMKKAD-EFAGVIKM 180 (462)
T ss_dssp HHHHHHHHHHHHTTCCTTCTTTSCCCCCCTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEE
T ss_pred hhhhhHHHHHHhcCCcCCCccccccchhhhhccc-hhhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHH-hhccccch
Confidence 45556666665533 5999999 999999999999999999999999999888877654 34555566
Q ss_pred CCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh--cCCcceecccCCC-Ccccc
Q psy3416 91 GTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM--NPQFNFLTLPESF-LTGSS 167 (455)
Q Consensus 91 G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~--~~ei~el~~~e~~-~~gSS 167 (455)
|.++..+- .|. +++ .+++.+... +.+|+..+. ...+..+ |-+. .+|.+
T Consensus 181 GRTHlQ~A----------~Pi--TfG--------~~~~~~~~~-------l~r~~~RL~~~~~~l~~~--~lGg~a~g~~ 231 (462)
T d1j3ua_ 181 GRTHLQDA----------VPI--LLG--------QEFEAYARV-------IARDIERIANTRNNLYDI--NMGATAVGTG 231 (462)
T ss_dssp EEETTEEE----------EEE--EHH--------HHHHHHHHH-------HHHHHHHHHHTTGGGSEE--CTTCTTTSSC
T ss_pred hHHhCccc----------cce--eHH--------HHHHHHHHH-------HHHHHHHHHHHHHHHHhh--hccccccccc
Confidence 66654431 111 111 122223332 333443332 2233332 2221 23444
Q ss_pred ccCCCCCcchHHHHHHHHhhcccccchhhHHHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy3416 168 IMPQKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM 246 (455)
Q Consensus 168 tMP~K~NP~~~e~~~~~~~~gt~~~~~~~~~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~ 246 (455)
..+++....... ......+++. .+..|+++++++||+++++++++++++.+|+|||+|+++|+
T Consensus 232 ~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~rD~~~e~~~~L~~la~~L~Kia~Di~ll~ 295 (462)
T d1j3ua_ 232 LNADPEYISIVT----------------EHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMA 295 (462)
T ss_dssp TTCCHHHHHHHH----------------HHHHHHHCSCCEECSSHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCcchhhhhhh----------------HhHhhhhccccccccchHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455443222211 1233455665 67889999999999999999999999999999999999999
Q ss_pred cccccc
Q psy3416 247 NPQFNF 252 (455)
Q Consensus 247 s~~~~~ 252 (455)
++|+.+
T Consensus 296 s~e~~~ 301 (462)
T d1j3ua_ 296 SGPRAG 301 (462)
T ss_dssp CCSTTS
T ss_pred CCcccc
Confidence 998764
No 20
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Probab=98.49 E-value=2.2e-06 Score=86.92 Aligned_cols=176 Identities=13% Similarity=0.130 Sum_probs=113.4
Q ss_pred CcccccccccCccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCch
Q psy3416 37 KTIMPGFTHFQIAQPISLGHYLL-AYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSL 115 (455)
Q Consensus 37 ~tvm~grTh~Q~A~P~T~G~~la-~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~ 115 (455)
+.|..|+| .||..||-+-..+. .+...|...+++|.+.+..... .+....+.|.++..+. .|. ++
T Consensus 129 ~~vh~g~S-snD~~~Ta~~l~~~~~l~~~l~~~L~~L~~~L~~~A~-~~~~t~m~GRTHlQ~A----------~Pi--T~ 194 (460)
T d1vdka_ 129 DHVNRGQS-SNDTFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQ-AFDQIVKVGRTHLMDA----------VPI--TL 194 (460)
T ss_dssp CCCTTTCC-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE----------EEE--EH
T ss_pred hHHHhccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HccCeeehhhhhcccc----------cCc--cH
Confidence 45667999 99999998887776 4445688888888877776654 4555566676655431 111 11
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHHHHHHhhcccccchh
Q psy3416 116 DSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRAALAGTTHHINR 195 (455)
Q Consensus 116 ~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~~ 195 (455)
+ .+++.+...+.-.+.|+.+= ...+..+.+.. ..+|+.+.+++..+... .
T Consensus 195 G--------~~~a~~~~~l~r~~~RL~~~-----~~~l~~~~lGG-aAvGt~~~~~~~~~~~~----------------~ 244 (460)
T d1vdka_ 195 G--------QEIGSWAAQLKTTLAAVKEM-----EKGLYNLAIGG-TAVGTGLNAHPRFGELV----------------A 244 (460)
T ss_dssp H--------HHHHHHHHHHHHHHHHHHHH-----HGGGGEECTTC-TTTSSCTTSCTTHHHHH----------------H
T ss_pred H--------HHHHHHHHHHHHHHHHHHHH-----HhhhhhhcCCC-ccccccccccchhHHHH----------------H
Confidence 1 12233333333333333211 12222222221 12455555555433221 2
Q ss_pred hHHHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q psy3416 196 YLTAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP 256 (455)
Q Consensus 196 ~~~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp 256 (455)
.+++..+||+ .+..|.++++++||++++++++++.++.+|+||++|+++|+++|+.++..+
T Consensus 245 ~~la~~lGl~~~~~~n~~~~~~~rD~~~e~~~~l~~la~~L~Kia~Dir~l~s~e~~~i~E~ 306 (460)
T d1vdka_ 245 KYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEI 306 (460)
T ss_dssp HHHHHHHSSCCEECSCTTHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCBSSSSCCSE
T ss_pred HHHHHHhCcCccccCCchhheecchhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhceehhh
Confidence 3467889998 667899999999999999999999999999999999999999988765544
No 21
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Probab=98.41 E-value=1.2e-05 Score=81.39 Aligned_cols=180 Identities=13% Similarity=0.107 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHhc-------------CcccccccccCccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCCccc
Q psy3416 23 TMIKHLTDLSDKHA-------------KTIMPGFTHFQIAQPISLGHYLL-AYASMFQRDINRLIDCRKRVNISPLGSAA 88 (455)
Q Consensus 23 ~l~~~L~~~A~~~~-------------~tvm~grTh~Q~A~P~T~G~~la-~~~~~L~r~~~rL~~~~~r~~~~~lGga~ 88 (455)
.+.+.+.+.+.+.- +-+..|+| .|+..||..-.... .+.+.+..++.+|.+.+..... .+...+
T Consensus 102 ~v~~vi~~~~~e~~g~~~~~~~~~~~~~~v~~~~s-~~d~~~ta~~l~~~~~~~~~l~~~l~~l~~~L~~~A~-~~~~tv 179 (456)
T d1fuoa_ 102 NMNEVLANRASELLGGVRGMERKVHPNDDVNKSQS-SNDVFPTAMHVAALLALRKQLIPQLKTLTQTLNEKSR-AFADIV 179 (456)
T ss_dssp HHHHHHHHHHHHHTTCCSSTTCSSCCCCCCTTTCC-HHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHH-HTTTCE
T ss_pred hhHHHHHHHHHHHhCcccccccccchhhHHHHhhh-hhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HhcCce
Confidence 55566666666542 33445555 67778877766553 5556778888888777776654 455666
Q ss_pred cCCCCcCcchHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccc
Q psy3416 89 LAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSI 168 (455)
Q Consensus 89 ~~G~~~~~~~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSSt 168 (455)
+.|.++..+ ..|. +++ .+++.++..+.-.+.|+..=.. .+.++.+.
T Consensus 180 m~GrTHlQ~----------A~Pi--TfG--------~~~~~~~~~l~R~~~RL~~~~~-----r~~~~~lG--------- 225 (456)
T d1fuoa_ 180 KIGRTHLQD----------ATPL--TLG--------QEISGWVAMLEHNLKHIEYSLP-----HVAELALG--------- 225 (456)
T ss_dssp ECCEETTEE----------CCCE--EHH--------HHHHHHHHHHHHHHHHHHHHHH-----HHTEECTT---------
T ss_pred eccHHhcCC----------CCCE--ehH--------HHHHHHHHHHHHhHHHHHHHHH-----HHHHhCCC---------
Confidence 667665443 1111 111 1222233333333333322111 11221111
Q ss_pred cCCCCCcchHHHHHHHHhhcccccchhhH-------HHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy3416 169 MPQKKNPDVKDLRQRAALAGTTHHINRYL-------TAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240 (455)
Q Consensus 169 MP~K~NP~~~e~~~~~~~~gt~~~~~~~~-------~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~ 240 (455)
++++||+...++.+ .+..++++ ++..|+++++++||+++++++++++++.+|+|||+
T Consensus 226 ---------------Gaa~Gt~~~~~~~~~~~~~~~l~~~~~~~~~~~~n~~~~~~~rD~~~e~~~~la~la~~L~kia~ 290 (456)
T d1fuoa_ 226 ---------------GTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHGALKGLAASLMKIAN 290 (456)
T ss_dssp ---------------CTTTSSCTTSCTTHHHHHHHHHHHHHTSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---------------CCcccCccccChHHHHHHHHHhhhcccCCceeccCHHHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 12223333333332 23445555 66799999999999999999999999999999999
Q ss_pred HHHhhhccccccc
Q psy3416 241 EFIIFMNPQFNFL 253 (455)
Q Consensus 241 d~~~~~s~~~~~~ 253 (455)
|+++|+|++..++
T Consensus 291 Di~ll~s~~~~e~ 303 (456)
T d1fuoa_ 291 DVRWLASGPRCGI 303 (456)
T ss_dssp HHHHHTCCSSSSC
T ss_pred HHHHHHhHhhcch
Confidence 9999999877654
No 22
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima [TaxId: 2336]}
Probab=98.33 E-value=1.2e-06 Score=88.10 Aligned_cols=186 Identities=14% Similarity=0.187 Sum_probs=114.2
Q ss_pred HHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchH
Q psy3416 20 LLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY 99 (455)
Q Consensus 20 ~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~ 99 (455)
.+..+.+.|.++..+..+.++.|+| .||-.||.+...+......+...+.+|.+.+..... ......+.|.++..+-
T Consensus 68 dV~a~v~~l~~~~g~~~~~vH~G~T-s~Di~~ta~~l~~~~~~~~l~~~l~~l~~~l~~~a~-~~~~t~m~grTh~Q~A- 144 (429)
T d1c3ca_ 68 DVVAFVEGIGSMIGEDSRFFHYGLT-SSDVLDTANSLALVEAGKILLESLKEFCDVLWEVAN-RYKHTPTIGRTHGVHA- 144 (429)
T ss_dssp HHHHHHHHHHHHHGGGGGGTTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE-
T ss_pred CcHHHHHHHHHHcchhhccccCCCC-hHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH-hccCeeecchHhhccc-
Confidence 4566777788888888899999999 999999999999998888999999888877776654 3555555566654431
Q ss_pred HHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHH
Q psy3416 100 LTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKD 179 (455)
Q Consensus 100 ~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e 179 (455)
.|. +++ .++..+...+.-.+.++..-... +... |-+...|+.+.. .|...+
T Consensus 145 ---------~P~--T~G--------~~~~~~~~~l~r~~~rl~~~~~~-----~~~~--~~gga~g~~~~~---~~~~~~ 195 (429)
T d1c3ca_ 145 ---------EPT--SFG--------LKVLGWYSEMKRNVQRLERAIEE-----VSYG--KISGAVGNYANV---PPEVEE 195 (429)
T ss_dssp ---------EEE--EHH--------HHHHHHHHHHHHHHHHHHHHHHH-----TCEE--CCCCTTSSCSSS---CHHHHH
T ss_pred ---------CCc--hhH--------HHHHHHHHHHHHHHHHHHHhhhh-----hhhc--cccccccccccc---chhHHH
Confidence 011 111 11222222222222222211111 1111 111111211110 011111
Q ss_pred HHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccc
Q psy3416 180 LRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP 256 (455)
Q Consensus 180 ~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp 256 (455)
. ....+++ .+..+ ..++.+||++.+++..++.++.+|+|||+|+++|++++++++..|
T Consensus 196 ~-----------------~~~~~~~-~~~~~-~~~~~~rd~~~e~~~~l~~~~~~L~kia~Dl~~~~~~e~gev~e~ 253 (429)
T d1c3ca_ 196 K-----------------ALSYLGL-KPEPV-STQVVPRDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEP 253 (429)
T ss_dssp H-----------------HHHHTTC-EECSS-CSSSCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSEECC
T ss_pred H-----------------HHHhhcC-Ccccc-chHhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEeec
Confidence 0 1122222 22222 368899999999999999999999999999999999999887766
No 23
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=98.22 E-value=2.3e-06 Score=86.70 Aligned_cols=169 Identities=12% Similarity=0.126 Sum_probs=103.6
Q ss_pred CcccccccccCccccchHHHHHH-HHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCCch
Q psy3416 37 KTIMPGFTHFQIAQPISLGHYLL-AYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSL 115 (455)
Q Consensus 37 ~tvm~grTh~Q~A~P~T~G~~la-~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n~~ 115 (455)
+.|..|+| .||..||.+-.++. .+.+.|...+++|.+.+..... .+....+.|.++..+- .|. ++
T Consensus 131 d~v~~gqS-snD~~~Ta~~l~~~~~~~~~L~~~L~~L~~~L~~kA~-e~~~~im~GRTHlQ~A----------~Pi--T~ 196 (459)
T d1yfma_ 131 NHCNQSQS-SNDTFPTVMHIAASLQIQNELIPELTNLKNALEAKSK-EFDHIVKIGRTHLQDA----------TPL--TL 196 (459)
T ss_dssp CCCTTTCC-HHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE----------EEE--EH
T ss_pred hhhhhccc-hHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCeeehhHhhCCcC----------CCe--eH
Confidence 45778899 99999999888874 5566788889888877776654 3555666676654431 111 11
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCC-CCccccccCCCCCcchHHHHHHHHhhcccccch
Q psy3416 116 DSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPES-FLTGSSIMPQKKNPDVKDLRQRAALAGTTHHIN 194 (455)
Q Consensus 116 ~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~-~~~gSStMP~K~NP~~~e~~~~~~~~gt~~~~~ 194 (455)
+ .++..+...+.-.+.|+.+=...+ .++.+... .+.|.++.|.....+.
T Consensus 197 G--------~~~~~~~~~l~r~~~RL~~~~~~l-----~~~~lGgta~gtg~~a~~~~~~~v~----------------- 246 (459)
T d1yfma_ 197 G--------QEFSGYVQQVENGIQRVAHSLKTL-----SFLAQGGTAVGTGLNTKPGFDVKIA----------------- 246 (459)
T ss_dssp H--------HHHHHHHHHHHHHHHHHHHHHHHH-----TEECTTCTTTSSCTTSCTTHHHHHH-----------------
T ss_pred H--------HHHHHHHHHHHHHHHHHHHHHHhh-----hhhhcccchhhccccCCCcchHHHH-----------------
Confidence 1 122223333333333332222111 11111111 0112233332221111
Q ss_pred hhHHHhhhcCC-CCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccc
Q psy3416 195 RYLTAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQF 250 (455)
Q Consensus 195 ~~~~a~~l~~~-~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~ 250 (455)
..++..+|+. .+.+|+++++++||+++++++++++++.+|+|||+|+++|+|++.
T Consensus 247 -~~l~~~lgl~~~~~~n~~~a~~~rD~~~e~~~~L~~la~~L~Kia~Dlrll~s~~~ 302 (459)
T d1yfma_ 247 -EQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPR 302 (459)
T ss_dssp -HHHHHHHSSCCEECSCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCSS
T ss_pred -HHHHHHcCCCCcccCchHHHHcCChhHHHHHHHHHHHHHHHHHHHHHHHHhcccee
Confidence 1245667777 667899999999999999999999999999999999999988754
No 24
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Probab=98.17 E-value=2.5e-06 Score=86.17 Aligned_cols=170 Identities=13% Similarity=0.093 Sum_probs=102.8
Q ss_pred HhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHHHHhcCCCCCCCC
Q psy3416 34 KHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSEN 113 (455)
Q Consensus 34 ~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~a~~LG~~~~~~n 113 (455)
+..+.++.|+| .||..||.+..++......+...+.+|.+.+..... ......+.|.++..+- .|.
T Consensus 94 ~~~~~vh~g~t-s~Di~~ta~~l~~~~~~~~l~~~l~~l~~~l~~~a~-~~~~~~m~grTH~Q~A----------~P~-- 159 (444)
T d1q5na_ 94 DAARYVHWGAT-SQDILDTACILQCRDALAIVQNQVQQCYETALSQAQ-TYRHQVMMGRTWLQQA----------LPI-- 159 (444)
T ss_dssp TGGGGTTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE----------EEE--
T ss_pred chHHHhcCCCC-chhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHh-hhhhhhhhHHHHhhcc----------CCc--
Confidence 34567999999 999999999999998888888888887777666654 3555555566654431 111
Q ss_pred chhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCC-ccccccCCCCCcchHHHHHHHHhhccccc
Q psy3416 114 SLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL-TGSSIMPQKKNPDVKDLRQRAALAGTTHH 192 (455)
Q Consensus 114 ~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~-~gSStMP~K~NP~~~e~~~~~~~~gt~~~ 192 (455)
+++ .++..+...+.-.+.++-+=.. .+.. .|-+.. ++.+..|.+ .+...+
T Consensus 160 T~G--------~~~~~~~~~l~r~~~rL~~~~~-----~~~~--~~lgga~g~~~~~~~~-~~~~~~------------- 210 (444)
T d1q5na_ 160 TLG--------HKLARWASAFKRDLDRINAIKA-----RVLV--AQLGGAVGSLASLQDQ-GSIVVE------------- 210 (444)
T ss_dssp EHH--------HHHHHHHHHHHHHHHHHHHHHH-----HHSB--CCCCCTTSSCGGGTTC-HHHHHH-------------
T ss_pred HHH--------HHHHHHHHHHHHHHHHHHHHHH-----HHHH--hhccccccccccccch-hHHHHH-------------
Confidence 111 1222222222222222211111 1111 122222 223333322 122222
Q ss_pred chhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3416 193 INRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 253 (455)
Q Consensus 193 ~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~ 253 (455)
.++..+|+ ..|...++++||++.+++..++.++.+|+|||+|+++|++++++++
T Consensus 211 ----~l~~~l~l---~~~~~~~~~~rd~~~e~~~~l~~~~~~L~kia~Dl~l~~~~e~~~~ 264 (444)
T d1q5na_ 211 ----AYAKQLKL---GQTACTWHGERDRIVEIASVLGIITGNVGKMARDWSLMMQTEIAEV 264 (444)
T ss_dssp ----HHHHHHTC---BCCSSCCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCE
T ss_pred ----Hhhhcccc---cccccchhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHhcccccccc
Confidence 12333444 4556788899999999999999999999999999999999887753
No 25
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}
Probab=97.89 E-value=3.6e-05 Score=76.39 Aligned_cols=188 Identities=14% Similarity=0.102 Sum_probs=111.9
Q ss_pred HHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcchHHH
Q psy3416 22 LTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLT 101 (455)
Q Consensus 22 ~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~~~~~ 101 (455)
..+...|.++. ..+.++.|+| .||-.||.+..++......+...+.+|...+..... .....++.|.++..+-
T Consensus 74 ~a~~~~l~~~~--~~~~vH~G~T-snDi~~ta~~l~~r~~~~~l~~~l~~l~~~L~~~a~-~~~~t~m~grTH~Q~A--- 146 (402)
T d1dofa_ 74 LSLVLLLEQKS--GCRYVHYGAT-SNDIIDTAWALLIRRALAAVKEKARAVGDQLASMAR-KYKTLEMVGRTHGQWA--- 146 (402)
T ss_dssp HHHHHHHHHHH--CCSCTTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEEE---
T ss_pred hHHHHHHhhhh--HHHHhhccCc-hHHhhhhHHHHHHHhhhhHHHHHHHHHHHHHHHHHH-hhcccchhhHhhcccc---
Confidence 34444554432 3567999999 999999999999999999999999998888877655 4566666666654431
Q ss_pred HHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCCCccccccCCCCCcchHHHH
Q psy3416 102 AKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLR 181 (455)
Q Consensus 102 a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~~~gSStMP~K~NP~~~e~~ 181 (455)
.|. +++ .++..+...+.-.+.++.. ...+.. .+-...+|+..-.....|....
T Consensus 147 -------~P~--T~G--------~~~~~~~~~l~r~~~rl~~-~~~~~~-------~~~gGa~g~~~~~~~~~~~~~~-- 199 (402)
T d1dofa_ 147 -------EPI--TLG--------FKFANYYYELYIACRQLAL-AEEFIR-------AKIGGAVGTMASWGELGLEVRR-- 199 (402)
T ss_dssp -------EEE--EHH--------HHHHHHHHHHHHHHHHHHH-HHHHCC-------BCCCCTTSSCGGGGGGHHHHHH--
T ss_pred -------ccc--hHH--------HHHHHHHHHHHHHHHHHHH-HHHHHh-------hcccccccccccccchhhHHHH--
Confidence 111 111 1222233333333334321 111111 1111122222111111121111
Q ss_pred HHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccccc
Q psy3416 182 QRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLT 261 (455)
Q Consensus 182 ~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~~lp~~~~~ 261 (455)
.++..+|++ ..+...++++||++.+++..++.++.+|+|||+|+++|++++++++ ++ .++
T Consensus 200 ---------------~l~~~lgl~--~~~~~~~~~~rd~~~e~~~~L~~~a~~L~kia~Di~~~s~~e~ge~--~e-~~~ 259 (402)
T d1dofa_ 200 ---------------RVAERLGLP--HHVITTQVAPRESFAVLASALALMAAVFERLAVEIRELSRPEIGEV--VE-GGG 259 (402)
T ss_dssp ---------------HHHHHTTCC--BCSSCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCSE--ES-CC-
T ss_pred ---------------HHHHHhccc--ccchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhCCccccc--cc-ccC
Confidence 122334443 3445678899999999999999999999999999999999998876 33 345
Q ss_pred cC
Q psy3416 262 GS 263 (455)
Q Consensus 262 ~S 263 (455)
||
T Consensus 260 GS 261 (402)
T d1dofa_ 260 GS 261 (402)
T ss_dssp --
T ss_pred cc
Confidence 54
No 26
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase (CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Probab=97.79 E-value=0.00013 Score=73.14 Aligned_cols=186 Identities=18% Similarity=0.165 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCccccCCCCcCcc
Q psy3416 18 IELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHIN 97 (455)
Q Consensus 18 ~~~l~~l~~~L~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~~~~~lGga~~~G~~~~~~ 97 (455)
...+..+.+.+.+...+..+.++.|+| .||-.||.+-.++..-...+...+.+|...+..... ......+.|.++..+
T Consensus 77 ~~~v~~~~~~~~~~~g~~~~~vH~G~T-snDi~~Ta~~L~lr~~~~~l~~~l~~l~~~L~~~a~-~~~~~~m~grTH~Q~ 154 (448)
T d1re5a_ 77 IPLVKALGKVIATGVPEAERYVHLGAT-SQDAMDTGLVLQLRDALDLIEADLGKLADTLSQQAL-KHADTPLVGRTWLQH 154 (448)
T ss_dssp HHHHHHHHHHHHHHCGGGGGGTTTTCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTTCEEEEEETTEE
T ss_pred HHHHHHHHHHHhhcCcchHhHccCCCC-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhhhhhhhHHHHHHH
Confidence 344455555555554566778999999 999999999999998888888888888777776654 355555556655443
Q ss_pred hHHHHHhcCCCCCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCcceecccCCC-CccccccCCCCCcc
Q psy3416 98 RYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESF-LTGSSIMPQKKNPD 176 (455)
Q Consensus 98 ~~~~a~~LG~~~~~~n~~~~~~~Rd~~~e~~~~l~~la~~l~kia~Dl~~l~~~ei~el~~~e~~-~~gSStMP~K~NP~ 176 (455)
- .|. +++ .++..+...+.-.+.|+.+=.. .+.. .|-+. .+|.+.++.+..|+
T Consensus 155 A----------~P~--T~G--------~~~~~~~~~l~r~~~rL~~~~~-----~~~~--~~lgga~g~~~~~~~~~~~~ 207 (448)
T d1re5a_ 155 A----------TPV--TLG--------MKLAGVLGALTRHRQRLQELRP-----RLLV--LQFGGASGSLAALGSKAMPV 207 (448)
T ss_dssp E----------EEE--EHH--------HHHHHHHHHHHHHHHHHHHHHH-----HHSB--CCCCCTTSSCGGGGGGHHHH
T ss_pred H----------hhh--HHH--------HHHHHHHhhhhhHHHHHHHHHH-----hhhh--cccCcCccchhcccchhHHH
Confidence 1 111 111 1122222222222222211111 1111 12222 22333344333222
Q ss_pred hHHHHHHHHhhcccccchhhHHHhhhcCCCCCCCcchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccc
Q psy3416 177 VKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFL 253 (455)
Q Consensus 177 ~~e~~~~~~~~gt~~~~~~~~~a~~l~~~~~~~~s~~a~~~rd~~~~~~~~~~~~~~~l~~~~~d~~~~~s~~~~~~ 253 (455)
. ..++..+||.. ++..++++||++.+++..++.++.+++||++|+++|++++++++
T Consensus 208 ~------------------~~l~~~lgl~~---~~~~~~~~rd~~~e~~~~l~~~~~~l~kia~di~~l~~~~~~~~ 263 (448)
T d1re5a_ 208 A------------------EALAEQLKLTL---PEQPWHTQRDRLVEFASVLGLVAGSLGKFGRDISLLMQTEAGEV 263 (448)
T ss_dssp H------------------HHHHHHHTCBC---CSSCCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTTCCE
T ss_pred H------------------HHHHHHhCCCC---CCCcchHhhhHHHHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhh
Confidence 1 23455677764 34467889999999999999999999999999999999887653
No 27
>d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}
Probab=27.83 E-value=1.1e+02 Score=22.68 Aligned_cols=28 Identities=7% Similarity=0.226 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHcCCChhHHHHHHHHHHH
Q psy3416 352 ISTDVADYLVKKGVPFRTSHEIVGSIIK 379 (455)
Q Consensus 352 ~a~~la~~L~~~g~~~r~Ah~~v~~~~~ 379 (455)
+.+.+.+..++.|+++++|..++.+...
T Consensus 22 ~~ea~~~~~~~~Gl~~~~a~~lv~~~~~ 49 (111)
T d1yqga1 22 LLDALQNAAIRQGFDMAEARALSLATFK 49 (111)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 4555666667679999999999988765
No 28
>d1gdta1 a.4.1.2 (A:141-183) gamma,delta resolvase (C-terminal domain) {Escherichia coli [TaxId: 562]}
Probab=24.10 E-value=37 Score=21.37 Aligned_cols=37 Identities=5% Similarity=0.208 Sum_probs=27.0
Q ss_pred cCCHHHHHHHhccCHhHHHHHHHHHHHcCCChhHHHHHHHH
Q psy3416 336 TFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGS 376 (455)
Q Consensus 336 ~v~~~~m~~~l~~~~~~a~~la~~L~~~g~~~r~Ah~~v~~ 376 (455)
.||.+++.+.-..|+ .++++|..| |+++..-|.++.+
T Consensus 5 ~Id~~~V~~L~~~G~-gat~IAk~l---gI~R~SVYR~L~~ 41 (43)
T d1gdta1 5 KIDRDAVLNMWQQGL-GASHISKTM---NIARSTVYKVINE 41 (43)
T ss_dssp CSCHHHHHHHHHTTC-CHHHHHHHH---TCCHHHHHHHHHS
T ss_pred ccCHHHHHHHHHcCC-CHHHHHHHH---CCCHHHHHHHHhh
Confidence 478888887767774 667777766 8888887777653
No 29
>d1ixca1 a.4.5.37 (A:1-89) LysR-type regulatory protein CbnR {Ralstonia eutropha [TaxId: 106590]}
Probab=22.14 E-value=1.1e+02 Score=21.37 Aligned_cols=50 Identities=12% Similarity=0.038 Sum_probs=35.0
Q ss_pred HHHHHHhcCcccccccccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy3416 29 TDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRV 79 (455)
Q Consensus 29 ~~~A~~~~~tvm~grTh~Q~A~P~T~G~~la~~~~~L~r~~~rL~~~~~r~ 79 (455)
++.-++.-++...-|+ .....||..|..+..++..+....+++.+.....
T Consensus 36 i~~LE~~lg~~Lf~R~-~~~~~lT~~G~~l~~~a~~il~~~~~~~~~~~~~ 85 (89)
T d1ixca1 36 MQALEADLGVVLLERS-HRGIELTAAGHAFLEDARRILELAGRSGDRSRAA 85 (89)
T ss_dssp HHHHHHHHTSCCBC------CCBCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCceeeEec-CCccCccHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556677888898 5778999999999999999998888877655443
Done!