RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3416
(455 letters)
>gnl|CDD|179143 PRK00855, PRK00855, argininosuccinate lyase; Provisional.
Length = 459
Score = 390 bits (1004), Expect = e-133
Identities = 138/249 (55%), Positives = 184/249 (73%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
AALAGTT I+R TA+LL F+ +ENSLD++SDRDF +EF+S L+++HLSR++EE I
Sbjct: 200 AALAGTTFPIDRERTAELLGFDGVTENSLDAVSDRDFALEFLSAASLLMVHLSRLAEELI 259
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
++ + +F F+ LP++F TGSSIMPQKKNPDV ELIRGKTGR+Y NL +LT MK LAY
Sbjct: 260 LWSSQEFGFVELPDAFSTGSSIMPQKKNPDVAELIRGKTGRVYGNLTGLLTVMKGLPLAY 319
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
N+DLQEDK PLFD VD + + L A ++E T N++ M E A KGFS +TD+ADYLV+K
Sbjct: 320 NRDLQEDKEPLFDAVDTLKLSLEAMAGMLETLTVNKERMREAAGKGFSTATDLADYLVRK 379
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
GVPFR +HEIVG ++ E+ DLSL EL+ F I++D+ ++L E S+ +N I
Sbjct: 380 GVPFREAHEIVGKAVREAEERGVDLADLSLEELQAFSPLITEDVYEVLTPEGSVAARNSI 439
Query: 424 GGTSPEQVK 432
GGT+PEQV+
Sbjct: 440 GGTAPEQVR 448
Score = 321 bits (825), Expect = e-105
Identities = 108/176 (61%), Positives = 138/176 (78%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+ TDLRLY R ID I ELLL + K L DL+++HA TIMPG+TH Q AQP++ GH+LLAY
Sbjct: 115 VATDLRLYLRDEIDEIAELLLELQKALLDLAEEHADTIMPGYTHLQRAQPVTFGHHLLAY 174
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A M RD+ RL D RKRVN SPLGSAALAGTT I+R TA+LL F+ +ENSLD++SDR
Sbjct: 175 AEMLARDLERLRDARKRVNRSPLGSAALAGTTFPIDRERTAELLGFDGVTENSLDAVSDR 234
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDV 177
DF +EF+S L+++HLSR++EE I++ + +F F+ LP++F TGSSIMPQKKNPDV
Sbjct: 235 DFALEFLSAASLLMVHLSRLAEELILWSSQEFGFVELPDAFSTGSSIMPQKKNPDV 290
>gnl|CDD|176463 cd01359, Argininosuccinate_lyase, Argininosuccinate lyase
(argininosuccinase, ASAL). This group contains ASAL and
related proteins. It is a member of the Lyase class I
family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASAL is a cytosolic enzyme which catalyzes the
reversible breakdown of argininosuccinate to arginine
and fumarate during arginine biosynthesis. In ureotelic
species ASAL also catalyzes a reaction involved in the
production of urea. Included in this group are the major
soluble avian eye lens proteins from duck, delta 1 and
delta 2 crystallin. Of these two isoforms only delta 2
has retained ASAL activity. These crystallins may have
evolved by, gene recruitment of ASAL followed by gene
duplication. In humans, mutations in ASAL result in the
autosomal recessive disorder argininosuccinic aciduria.
Length = 435
Score = 346 bits (891), Expect = e-116
Identities = 133/264 (50%), Positives = 178/264 (67%), Gaps = 9/264 (3%)
Query: 178 KDLRQR--------AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229
D +R ALAGTT I+R TA+LL F+ P+ENSLD++SDRDFV+EF+S
Sbjct: 162 ADAYKRVNVSPLGAGALAGTTFPIDRERTAELLGFDGPTENSLDAVSDRDFVLEFLSAAA 221
Query: 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANL 289
L+++HLSR++E+ I++ +F F+ LP+++ TGSSIMPQKKNPDVLELIRGK GR+ L
Sbjct: 222 LLMVHLSRLAEDLILWSTQEFGFVELPDAYSTGSSIMPQKKNPDVLELIRGKAGRVIGAL 281
Query: 290 INILTTMKCQTLAYNKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKG 349
+LTT+K LAYNKDLQEDK PLFD VD +I L +I T N + M E A G
Sbjct: 282 AGLLTTLKGLPLAYNKDLQEDKEPLFDAVDTLIASLRLLTGVISTLTVNPERMREAAEAG 341
Query: 350 FSISTDVADYLVK-KGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDII 408
FS +TD+ADYLV+ KGVPFR +H IVG ++ EK K DL+LAEL+ +D+
Sbjct: 342 FSTATDLADYLVREKGVPFREAHHIVGRAVRLAEEKGKDLSDLTLAELQAISPLFEEDVR 401
Query: 409 DILCIENSIKFKNHIGGTSPEQVK 432
+ L ENS++ + GGT+P +V+
Sbjct: 402 EALDPENSVERRTSYGGTAPAEVR 425
Score = 298 bits (765), Expect = 4e-97
Identities = 102/177 (57%), Positives = 138/177 (77%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
+ TDLRLY R + ++ELLL + + L D +++HA TIMPG+TH Q AQPI+ GHYLLA
Sbjct: 90 QVATDLRLYLRDALLELLELLLDLQRALLDRAEEHADTIMPGYTHLQRAQPITFGHYLLA 149
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISD 120
YA M +RD+ RL D KRVN+SPLG+ ALAGTT I+R TA+LL F+ P+ENSLD++SD
Sbjct: 150 YAEMLERDLERLADAYKRVNVSPLGAGALAGTTFPIDRERTAELLGFDGPTENSLDAVSD 209
Query: 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDV 177
RDFV+EF+S L+++HLSR++E+ I++ +F F+ LP+++ TGSSIMPQKKNPDV
Sbjct: 210 RDFVLEFLSAAALLMVHLSRLAEDLILWSTQEFGFVELPDAYSTGSSIMPQKKNPDV 266
>gnl|CDD|223243 COG0165, ArgH, Argininosuccinate lyase [Amino acid transport and
metabolism].
Length = 459
Score = 336 bits (865), Expect = e-112
Identities = 129/260 (49%), Positives = 179/260 (68%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
ALAGT I+R TA+LL F+ + NSLD++SDRDF++EF+S LI++HLSR++E+ I
Sbjct: 199 GALAGTPFPIDRERTAELLGFDAVTRNSLDAVSDRDFILEFLSAAALIMVHLSRLAEDLI 258
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
++ +P+F F+ LP+ F TGSSIMPQKKNPDVLELIRGK GR+ L +LT MK LAY
Sbjct: 259 LWSSPEFGFIELPDEFSTGSSIMPQKKNPDVLELIRGKAGRVIGALTGLLTIMKGLPLAY 318
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
N+DLQEDK PLFD+VD + L ++ T N++ M E A GFS +TD+ADYLV+K
Sbjct: 319 NRDLQEDKEPLFDSVDTLEDSLRVLAGMVSGLTVNKERMREAAEAGFSTATDLADYLVRK 378
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
GVPFR +HEIVG ++ E+ K DLSL EL++ I +D+ ++L E S+ +N
Sbjct: 379 GVPFREAHEIVGEAVRRAEERGKDLADLSLEELQSISPLIDEDVYEVLTPEESVAKRNSE 438
Query: 424 GGTSPEQVKITVQGFRFYIQ 443
GGT+PE+V+ + + +
Sbjct: 439 GGTAPEEVREAIARAKARLA 458
Score = 276 bits (708), Expect = 3e-88
Identities = 97/176 (55%), Positives = 135/176 (76%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+ TDLRL+ R + ++EL+ + K L DL+++HA+T+MPG+TH Q AQP++ H+LLAY
Sbjct: 114 VATDLRLWLRDKLLELLELIRILQKALLDLAEEHAETVMPGYTHLQRAQPVTFAHHLLAY 173
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A M RDI RL D KRVN+SPLG+ ALAGT I+R TA+LL F+ + NSLD++SDR
Sbjct: 174 AEMLARDIERLRDALKRVNVSPLGAGALAGTPFPIDRERTAELLGFDAVTRNSLDAVSDR 233
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDV 177
DF++EF+S LI++HLSR++E+ I++ +P+F F+ LP+ F TGSSIMPQKKNPDV
Sbjct: 234 DFILEFLSAAALIMVHLSRLAEDLILWSSPEFGFIELPDEFSTGSSIMPQKKNPDV 289
>gnl|CDD|129918 TIGR00838, argH, argininosuccinate lyase. This model describes
argininosuccinate lyase, but may include examples of
avian delta crystallins, in which argininosuccinate
lyase activity may or may not be present and the
biological role is to provide the optically clear
cellular protein of the eye lens [Amino acid
biosynthesis, Glutamate family].
Length = 455
Score = 320 bits (821), Expect = e-105
Identities = 118/249 (47%), Positives = 172/249 (69%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
ALAGT I+R A+LL F+ +ENSLD++SDRDF++E + LI++HLSR +E+ I
Sbjct: 196 GALAGTGFPIDREYLAELLGFDAVTENSLDAVSDRDFILELLFVAALIMVHLSRFAEDLI 255
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
++ +F F+ LP+ F +GSSIMPQKKNPDV ELIRGKTGR+ NL +L T+K LAY
Sbjct: 256 LWSTGEFGFVELPDEFSSGSSIMPQKKNPDVAELIRGKTGRVQGNLTGMLMTLKALPLAY 315
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
N+DLQEDK PLFD + + + L + +++ T N++ M E A GFS +T++ADYLV+K
Sbjct: 316 NRDLQEDKEPLFDALKTVELSLEMATGMLDTITVNKERMEEAASAGFSNATELADYLVRK 375
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
GVPFR +H IVG ++ E+ K ++L+L EL+ F +D+ + L E+S++ ++
Sbjct: 376 GVPFREAHHIVGELVATAIERGKGLEELTLEELQKFSPEFDEDVYEALDPESSVEKRDAK 435
Query: 424 GGTSPEQVK 432
GGT+PE+V
Sbjct: 436 GGTAPEEVL 444
Score = 260 bits (666), Expect = 3e-82
Identities = 97/179 (54%), Positives = 130/179 (72%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+ TDLRLY R H+ + E LL + L +L++KH +T+MPG+TH Q AQPI+L H+LLAY
Sbjct: 111 VATDLRLYLRDHVLELAEALLDLQDALIELAEKHVETLMPGYTHLQRAQPITLAHHLLAY 170
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A M RD RL D KRVN+SPLGS ALAGT I+R A+LL F+ +ENSLD++SDR
Sbjct: 171 AEMLLRDYERLQDALKRVNVSPLGSGALAGTGFPIDREYLAELLGFDAVTENSLDAVSDR 230
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL 180
DF++E + LI++HLSR +E+ I++ +F F+ LP+ F +GSSIMPQKKNPDV +L
Sbjct: 231 DFILELLFVAALIMVHLSRFAEDLILWSTGEFGFVELPDEFSSGSSIMPQKKNPDVAEL 289
>gnl|CDD|215348 PLN02646, PLN02646, argininosuccinate lyase.
Length = 474
Score = 289 bits (741), Expect = 5e-93
Identities = 109/274 (39%), Positives = 169/274 (61%), Gaps = 8/274 (2%)
Query: 178 KDLRQRA--------ALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229
D R R ALAGT I+R++TAK L F P NS+D++SDRDFV+EF+
Sbjct: 198 VDCRPRVNFCPLGSCALAGTGLPIDRFMTAKDLGFTAPMRNSIDAVSDRDFVLEFLFANS 257
Query: 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANL 289
+ +HLSR+ EE++++ + +F F+T ++ TGSSIMPQKKNPD +EL+RGK+ R+ +L
Sbjct: 258 ITAIHLSRLGEEWVLWASEEFGFVTPSDAVSTGSSIMPQKKNPDPMELVRGKSARVIGDL 317
Query: 290 INILTTMKCQTLAYNKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKG 349
+ +L K AYN+DLQEDK PLFD+VD + L + + + TFN + + ++ G
Sbjct: 318 VTVLALCKGLPTAYNRDLQEDKEPLFDSVDTVSDMLEVATEFAQNITFNPERIKKSLPAG 377
Query: 350 FSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIID 409
+T +ADYLV+KGVPFR +H IVG+ + K DL+L +LK+ + +D+ +
Sbjct: 378 MLDATTLADYLVRKGVPFRETHHIVGAAVALAESKGCELSDLTLEDLKSINPVFEEDVYE 437
Query: 410 ILCIENSIKFKNHIGGTSPEQVKITVQGFRFYIQ 443
+L +ENS++ + G T V ++ +R ++
Sbjct: 438 VLGVENSVEKFDSYGSTGSRSVLEQLEKWRTKLE 471
Score = 227 bits (580), Expect = 3e-69
Identities = 85/179 (47%), Positives = 125/179 (69%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+ TD RL+ R ID+I + + T+ L +L++K+ ++PG+TH Q AQP+ L H+LL++
Sbjct: 127 VATDTRLWCRDAIDVIRKRIKTLQVALVELAEKNVDLVVPGYTHLQRAQPVLLSHWLLSH 186
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
+RD RL+DCR RVN PLGS ALAGT I+R++TAK L F P NS+D++SDR
Sbjct: 187 VEQLERDAGRLVDCRPRVNFCPLGSCALAGTGLPIDRFMTAKDLGFTAPMRNSIDAVSDR 246
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL 180
DFV+EF+ + +HLSR+ EE++++ + +F F+T ++ TGSSIMPQKKNPD +L
Sbjct: 247 DFVLEFLFANSITAIHLSRLGEEWVLWASEEFGFVTPSDAVSTGSSIMPQKKNPDPMEL 305
>gnl|CDD|179883 PRK04833, PRK04833, argininosuccinate lyase; Provisional.
Length = 455
Score = 285 bits (732), Expect = 5e-92
Identities = 110/248 (44%), Positives = 155/248 (62%)
Query: 185 ALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFII 244
ALAGT + I+R A L F + NSLDS+SDRD V+E +S + ++HLSR +E+ I
Sbjct: 199 ALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSDASISMVHLSRFAEDLIF 258
Query: 245 FMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYN 304
F + + F+ L + +GSS+MPQKKNPD LELIRGK GR+ L +L T+K LAYN
Sbjct: 259 FNSGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMLMTLKGLPLAYN 318
Query: 305 KDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKG 364
KD+QEDK LFD +D + CL + +++ E A +G++ +T++ADYLV KG
Sbjct: 319 KDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAKG 378
Query: 365 VPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIG 424
VPFR +H IVG + + K +DL LAEL+ F S I DD+ IL +++ + + G
Sbjct: 379 VPFREAHHIVGEAVVEAIRQGKPLEDLPLAELQKFSSVIGDDVYPILSLQSCLDKRAAKG 438
Query: 425 GTSPEQVK 432
G SP+QV
Sbjct: 439 GVSPQQVA 446
Score = 216 bits (551), Expect = 4e-65
Identities = 75/179 (41%), Positives = 114/179 (63%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+ TDL+L+ + + ++ L + L + ++ + +MPG+TH Q AQP++ H+ LAY
Sbjct: 113 VATDLKLWCKDQVAELLTALRQLQSALVETAENNQDAVMPGYTHLQRAQPVTFAHWCLAY 172
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
M RD +RL D KR+++SPLGS ALAGT + I+R A L F + NSLDS+SDR
Sbjct: 173 VEMLARDESRLQDALKRLDVSPLGSGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDR 232
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL 180
D V+E +S + ++HLSR +E+ I F + + F+ L + +GSS+MPQKKNPD +L
Sbjct: 233 DHVLELLSDASISMVHLSRFAEDLIFFNSGEAGFVELSDRVTSGSSLMPQKKNPDALEL 291
>gnl|CDD|183425 PRK12308, PRK12308, bifunctional argininosuccinate
lyase/N-acetylglutamate synthase; Provisional.
Length = 614
Score = 258 bits (661), Expect = 1e-79
Identities = 110/247 (44%), Positives = 159/247 (64%)
Query: 185 ALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFII 244
ALAGT + I+R A L F + + NSLDS+SDRD V+E +S + ++HLSR++E+ I
Sbjct: 199 ALAGTAYPIDREALAHNLGFRRATRNSLDSVSDRDHVMELMSVASISMLHLSRLAEDLIF 258
Query: 245 FMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYN 304
+ + + F+ L ++ +GSS+MPQKKNPD LELIRGKTGR+Y L ++ T+K LAYN
Sbjct: 259 YNSGESGFIELADTVTSGSSLMPQKKNPDALELIRGKTGRVYGALAGMMMTVKALPLAYN 318
Query: 305 KDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKG 364
KD+QEDK LFD +D C+ + + N + E A +G++ +T++ADYLV KG
Sbjct: 319 KDMQEDKEGLFDALDTWNDCMEMAALCFDGIKVNGERTLEAAKQGYANATELADYLVAKG 378
Query: 365 VPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIG 424
+PFR +H IVG + K ++LSL +LK F I DD+ IL IE+ ++ + +G
Sbjct: 379 IPFREAHHIVGVAVVGAIAKGCALEELSLEQLKEFSDVIEDDVYQILTIESCLEKRCALG 438
Query: 425 GTSPEQV 431
G SPEQV
Sbjct: 439 GVSPEQV 445
Score = 193 bits (491), Expect = 4e-55
Identities = 79/193 (40%), Positives = 125/193 (64%), Gaps = 6/193 (3%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+ TDL+L+ R+ ++ L + + + +++++H T++PG+TH Q AQP++ H+ LAY
Sbjct: 113 VATDLKLWCRQQGQQLLLALDQLQQQMVNVAERHQGTVLPGYTHLQRAQPVTFAHWCLAY 172
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
MF+RD +RL D R++ PLGS ALAGT + I+R A L F + + NSLDS+SDR
Sbjct: 173 VEMFERDYSRLEDALTRLDTCPLGSGALAGTAYPIDREALAHNLGFRRATRNSLDSVSDR 232
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL- 180
D V+E +S + ++HLSR++E+ I + + + F+ L ++ +GSS+MPQKKNPD +L
Sbjct: 233 DHVMELMSVASISMLHLSRLAEDLIFYNSGESGFIELADTVTSGSSLMPQKKNPDALELI 292
Query: 181 -----RQRAALAG 188
R ALAG
Sbjct: 293 RGKTGRVYGALAG 305
>gnl|CDD|176461 cd01334, Lyase_I, Lyase class I family; a group of proteins which
catalyze similar beta-elimination reactions. The Lyase
class I family contains class II fumarase, aspartase,
adenylosuccinate lyase (ASL), argininosuccinate lyase
(ASAL), prokaryotic-type 3-carboxy-cis,cis-muconate
cycloisomerase (pCMLE), and related proteins. It belongs
to the Lyase_I superfamily. Proteins of this family for
the most part catalyze similar beta-elimination
reactions in which a C-N or C-O bond is cleaved with the
release of fumarate as one of the products. These
proteins are active as tetramers. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits.
Length = 325
Score = 235 bits (602), Expect = 3e-74
Identities = 71/179 (39%), Positives = 110/179 (61%), Gaps = 2/179 (1%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
++ T LRL R +DI++ L +I L +++H T+MPG TH Q AQP +LGH L A
Sbjct: 83 IVDTALRLALRDALDILLPALKALIDALAAKAEEHKDTVMPGRTHLQDAQPTTLGHELAA 142
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSAALAGT--THHINRYLTAKLLDFEKPSENSLDSI 118
+A+ +RD+ RL + KR+N+ PLG A+ I+R A+LL F P+ NS ++
Sbjct: 143 WAAELERDLERLEEALKRLNVLPLGGGAVGTGANAPPIDRERVAELLGFFGPAPNSTQAV 202
Query: 119 SDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDV 177
SDRDF++E +S L+ + LS+I+ + + + +F + LP++ GSSIMPQK NP +
Sbjct: 203 SDRDFLVELLSALALLAVSLSKIANDLRLLSSGEFGEVELPDAKQPGSSIMPQKVNPVI 261
Score = 173 bits (441), Expect = 2e-50
Identities = 54/157 (34%), Positives = 85/157 (54%), Gaps = 2/157 (1%)
Query: 184 AALAGT--THHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEE 241
A+ I+R A+LL F P+ NS ++SDRDF++E +S L+ + LS+I+ +
Sbjct: 169 GAVGTGANAPPIDRERVAELLGFFGPAPNSTQAVSDRDFLVELLSALALLAVSLSKIAND 228
Query: 242 FIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTL 301
+ + +F + LP++ GSSIMPQK NP +LEL+RG GR+ NL +L +K L
Sbjct: 229 LRLLSSGEFGEVELPDAKQPGSSIMPQKVNPVILELVRGLAGRVIGNLAALLEALKGGPL 288
Query: 302 AYNKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFN 338
N D ++ L D+ D + L ++E N
Sbjct: 289 EDNVDSPVEREALPDSFDLLDAALRLLTGVLEGLEVN 325
>gnl|CDD|215787 pfam00206, Lyase_1, Lyase.
Length = 312
Score = 155 bits (395), Expect = 5e-44
Identities = 60/183 (32%), Positives = 88/183 (48%), Gaps = 9/183 (4%)
Query: 3 VTDLRLYTRKHIDIIIE-LLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
T LRL + + ++ L +I L + + + A + PG TH Q A P++LG L Y
Sbjct: 116 PTALRLALKLALSEVLLPALGQLIDALKEKAKEFADVVKPGRTHLQDATPVTLGQELSGY 175
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINR----YLTAKLLDFEK---PSENS 114
A RD+ RL R+ + PLG GT + + L +L F P+ NS
Sbjct: 176 AVALTRDLERLKQLLPRILVEPLGGGTAVGTGLNADPEFAELLAKELGFFTGLPVPAPNS 235
Query: 115 LDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLT-GSSIMPQKK 173
++ SDRD V+EF L+ HLS+ + + + + F F+ L GSSIMP K
Sbjct: 236 FEATSDRDAVVEFSGALALLATHLSKFANDLRLLSSGPFGFVELSLPEGEPGSSIMPGKV 295
Query: 174 NPD 176
NPD
Sbjct: 296 NPD 298
Score = 95.5 bits (238), Expect = 7e-22
Identities = 43/125 (34%), Positives = 60/125 (48%), Gaps = 16/125 (12%)
Query: 177 VKDLRQR--------AALAGTTHHINR----YLTAKLLDFEK---PSENSLDSISDRDFV 221
+K L R GT + + L +L F P+ NS ++ SDRD V
Sbjct: 186 LKQLLPRILVEPLGGGTAVGTGLNADPEFAELLAKELGFFTGLPVPAPNSFEATSDRDAV 245
Query: 222 IEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLT-GSSIMPQKKNPDVLELIRG 280
+EF L+ HLS+ + + + + F F+ L GSSIMP K NPD LEL+RG
Sbjct: 246 VEFSGALALLATHLSKFANDLRLLSSGPFGFVELSLPEGEPGSSIMPGKVNPDQLELLRG 305
Query: 281 KTGRI 285
K GR+
Sbjct: 306 KAGRV 310
>gnl|CDD|176466 cd01594, Lyase_I_like, Lyase class I_like superfamily: contains the
lyase class I family, histidine ammonia-lyase and
phenylalanine ammonia-lyase, which catalyze similar
beta-elimination reactions. Lyase class I_like
superfamily of enzymes that catalyze beta-elimination
reactions and are active as homotetramers. The four
active sites of the homotetrameric enzyme are each
formed by residues from three different subunits. This
superfamily contains the lyase class I family, histidine
ammonia-lyase and phenylalanine ammonia-lyase. The lyase
class I family comprises proteins similar to class II
fumarase, aspartase, adenylosuccinate lyase,
argininosuccinate lyase, and 3-carboxy-cis, cis-muconate
lactonizing enzyme which, for the most part catalyze
similar beta-elimination reactions in which a C-N or C-O
bond is cleaved with the release of fumarate as one of
the products. Histidine or phenylalanine ammonia-lyase
catalyze a beta-elimination of ammonia from histidine
and phenylalanine, respectively.
Length = 231
Score = 125 bits (315), Expect = 3e-33
Identities = 51/175 (29%), Positives = 73/175 (41%), Gaps = 48/175 (27%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
T LRL R +D ++ LL +I L ++ H T+MPG TH Q AQP++LG+ L A+A
Sbjct: 49 TALRLALRDALDDLLPLLKALIDALALKAEAHKGTVMPGRTHLQDAQPVTLGYELRAWAQ 108
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDF 123
+ RD+ RL +
Sbjct: 109 VLGRDLERLEEA-----------------------------------------------A 121
Query: 124 VIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL-TGSSIMPQKKNPDV 177
V E + L HLS+I+E+ + ++ +F L P GSSIMPQK NP
Sbjct: 122 VAEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGSSIMPQKVNPVA 176
Score = 110 bits (276), Expect = 9e-28
Identities = 37/107 (34%), Positives = 55/107 (51%), Gaps = 1/107 (0%)
Query: 220 FVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL-TGSSIMPQKKNPDVLELI 278
V E + L HLS+I+E+ + ++ +F L P GSSIMPQK NP EL+
Sbjct: 121 AVAEALDALALAAAHLSKIAEDLRLLLSGEFGELGEPFLPGQPGSSIMPQKVNPVAAELV 180
Query: 279 RGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDNIIMCL 325
RG G + NL+ +LT +K N+D + L D++ +I L
Sbjct: 181 RGLAGLVIGNLVAVLTALKGGPERDNEDSPSMREILADSLLLLIDAL 227
>gnl|CDD|235010 PRK02186, PRK02186, argininosuccinate lyase; Provisional.
Length = 887
Score = 128 bits (322), Expect = 1e-31
Identities = 58/172 (33%), Positives = 99/172 (57%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
T +L+ R+ + L + + L + + +P ++ +Q A P SLGHYLLA
Sbjct: 522 TTTKLHLREATSRAFDALWRLRRALVFKASANVDCALPIYSQYQPALPGSLGHYLLAVDG 581
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDF 123
R+ + L + +++ PLG+ A GTT I+ A+LL FE+P+ NSLD+++ RD
Sbjct: 582 ALARETHALFALFEHIDVCPLGAGAGGGTTFPIDPEFVARLLGFEQPAPNSLDAVASRDG 641
Query: 124 VIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNP 175
V+ F+S I LSR++++ ++ +F ++LP++ GSS++PQKKNP
Sbjct: 642 VLHFLSAMAAISTVLSRLAQDLQLWTTREFALVSLPDALTGGSSMLPQKKNP 693
Score = 113 bits (284), Expect = 9e-27
Identities = 61/210 (29%), Positives = 102/210 (48%), Gaps = 30/210 (14%)
Query: 185 ALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFII 244
A GTT I+ A+LL FE+P+ NSLD+++ RD V+ F+S I LSR++++ +
Sbjct: 606 AGGGTTFPIDPEFVARLLGFEQPAPNSLDAVASRDGVLHFLSAMAAISTVLSRLAQDLQL 665
Query: 245 FMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRI---------------YANL 289
+ +F ++LP++ GSS++PQKKNP +LE ++G+ G + ++N
Sbjct: 666 WTTREFALVSLPDALTGGSSMLPQKKNPFLLEFVKGRAGVVAGALASASAALGKTPFSNS 725
Query: 290 INILTTMKCQTLAYNKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKG 349
+ M +A ED V LI+ ++ M G
Sbjct: 726 FEAGSPM-NGPIAQACAAIED------------AAAVLV-LLIDGLEADQARMRAHLEDG 771
Query: 350 FSISTDVADYLV-KKGVPFRTSHEIVGSII 378
+T VA+ LV ++ + FR++H VG I
Sbjct: 772 GVSATAVAESLVVRRSISFRSAHTQVGQAI 801
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 124 bits (313), Expect = 4e-31
Identities = 63/175 (36%), Positives = 104/175 (59%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
M VT R+ R+++ ++E L + + + L+ H +TIMP +TH Q AQP + GHY LA
Sbjct: 119 MGVTMYRMSLRRYVLRLMEHHLLLQESILQLAADHKETIMPAYTHTQPAQPTTFGHYTLA 178
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISD 120
QRD+ R+ K +N SP+G+AAL+ T+ I R A LL F ENS D+++
Sbjct: 179 IYDTMQRDLERMKKTYKLLNQSPMGAAALSTTSFPIKRERVADLLGFTNVIENSYDAVAG 238
Query: 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNP 175
D+++E S +++ + SR +F++ +++ +T+ ++ SSIMPQK+NP
Sbjct: 239 ADYLLEVSSLLMVMMTNTSRWIHDFLLLATKEYDGITVARPYVQISSIMPQKRNP 293
Score = 81.6 bits (201), Expect = 1e-16
Identities = 64/269 (23%), Positives = 118/269 (43%), Gaps = 8/269 (2%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
AAL+ T+ I R A LL F ENS D+++ D+++E S +++ + SR +F+
Sbjct: 205 AALSTTSFPIKRERVADLLGFTNVIENSYDAVAGADYLLEVSSLLMVMMTNTSRWIHDFL 264
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
+ +++ +T+ ++ SSIMPQK+NP +E R T + +
Sbjct: 265 LLATKEYDGITVARPYVQISSIMPQKRNPVSIEHARAITSSALGEAFTVFQMIHNTPFGD 324
Query: 304 NKDLQEDKLP-LFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVK 362
D ++D P L+ ++ I +I E + + K TD AD L K
Sbjct: 325 IVDTEDDLQPYLYKGIEKAIRVFCIMNAVIRTMKVEEDTLKRRSYKHAITITDFADVLTK 384
Query: 363 K-GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFH------SYISDDIIDILCIEN 415
G+PFR +H I E+ K +L ++ + + + +I+ E
Sbjct: 385 NYGIPFRHAHHAASVIANMSLEQKKELHELCFKDVNIYLQEKFKIQLLEKEWEEIISPEA 444
Query: 416 SIKFKNHIGGTSPEQVKITVQGFRFYIQK 444
I+ +N GG S ++++ + + +K
Sbjct: 445 FIQKRNVYGGPSKKEMERMINNRKELFRK 473
>gnl|CDD|176467 cd01595, Adenylsuccinate_lyase_like, Adenylsuccinate lyase
(ASL)_like. This group contains ASL, prokaryotic-type
3-carboxy-cis,cis-muconate cycloisomerase (pCMLE), and
related proteins. These proteins are members of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). pCMLE catalyzes the
cyclization of 3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone, in the beta-ketoadipate
pathway. ASL deficiency has been linked to several
pathologies including psychomotor retardation with
autistic features, epilepsy and muscle wasting.
Length = 381
Score = 106 bits (267), Expect = 3e-25
Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 11/169 (6%)
Query: 14 IDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLI 73
+DII+ L +I L L+ +H T M G TH Q A P + G +A+ R + RL
Sbjct: 105 LDIILPDLDALIDALAKLALEHKDTPMLGRTHGQHALPTTFGKKFAVWAAELLRHLERLE 164
Query: 74 DCRKRVNISPLGS-----AALAGTTHHINRYLTAKL-LDFEKPSENSLDSISDRDFVIEF 127
+ R+RV + + A+L + + KL L + I RD + E
Sbjct: 165 EARERVLVGGISGAVGTHASLGPKGPEVEERVAEKLGLKVPPITTQ----IEPRDRIAEL 220
Query: 128 ISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP-ESFLTGSSIMPQKKNP 175
+S LI L +I+ + + + + P E GSS MP K+NP
Sbjct: 221 LSALALIAGTLEKIATDIRLLQRTEIGEVEEPFEKGQVGSSTMPHKRNP 269
Score = 55.6 bits (135), Expect = 2e-08
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 1/83 (1%)
Query: 215 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP-ESFLTGSSIMPQKKNPD 273
I RD + E +S LI L +I+ + + + + P E GSS MP K+NP
Sbjct: 211 IEPRDRIAELLSALALIAGTLEKIATDIRLLQRTEIGEVEEPFEKGQVGSSTMPHKRNPI 270
Query: 274 VLELIRGKTGRIYANLINILTTM 296
E I G + A L +
Sbjct: 271 DSENIEGLARLVRALAAPALENL 293
>gnl|CDD|223094 COG0015, PurB, Adenylosuccinate lyase [Nucleotide transport and
metabolism].
Length = 438
Score = 88.4 bits (220), Expect = 5e-19
Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 19/173 (10%)
Query: 14 IDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLI 73
+D+I+ L +I+ L +L+ +H T M G TH Q A+P + G + + R + RL
Sbjct: 114 LDLILPDLKRLIEALAELALEHKDTPMLGRTHGQPAEPTTFGKKFANWLAELLRHLERLE 173
Query: 74 DCRKRVNISPLGSAALAGTTHH-------INRYLTAKL-LDFEKPSENSLDSISDRDFVI 125
+ +R+ + +G A GT + + KL L S +S RD +
Sbjct: 174 EAEERIIVGKIGGA--VGTLAALGDLGAEVEERVAEKLGLKPAPIS----TQVSPRDRIA 227
Query: 126 EFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL---TGSSIMPQKKNP 175
EF S L+ L + + + + + E F GSS MP K+NP
Sbjct: 228 EFFSALALLAGSLEKFARDIRLLQRT--EVGEVEEPFAKGQVGSSAMPHKRNP 278
Score = 64.2 bits (157), Expect = 5e-11
Identities = 54/221 (24%), Positives = 87/221 (39%), Gaps = 25/221 (11%)
Query: 215 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL---TGSSIMPQKKN 271
+S RD + EF S L+ L + + + + + E F GSS MP K+N
Sbjct: 220 VSPRDRIAEFFSALALLAGSLEKFARDIRLLQRT--EVGEVEEPFAKGQVGSSAMPHKRN 277
Query: 272 PDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDK-----LP-LFDTVDNIIMCL 325
P E + G A + +L + L + +DL + LP F D L
Sbjct: 278 PIDSENVTGLARVARALVSTLLENL---VLWHERDLTDSSVERVILPDAFIAADGA---L 331
Query: 326 VASGKLIEKATFNEQEMYET--AIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNE 383
++E N + M G S V L KKG+ +HE+V E
Sbjct: 332 NRLLNVLEGLEVNPERMRRNLDLTLGLIASERVMLALRKKGMGREEAHELVREKAMKAWE 391
Query: 384 KHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIG 424
+ K F +L LA+ + Y+S++ + L + N++G
Sbjct: 392 QGKEFLELLLADERVTK-YLSEEELLEL-----LDPANYLG 426
>gnl|CDD|176469 cd01597, pCLME, prokaryotic 3-carboxy-cis,cis-muconate
cycloisomerase (CMLE)_like. This subgroup contains
pCLME and related proteins, and belongs to the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. CMLE catalyzes the cyclization of
3-carboxy-cis,cis-muconate (3CM) to
4-carboxy-muconolactone in the beta-ketoadipate pathway.
This pathway is responsible for the catabolism of a
variety of aromatic compounds into intermediates of the
citric cycle in prokaryotic and eukaryotic
micro-organisms.
Length = 437
Score = 86.5 bits (215), Expect = 3e-18
Identities = 51/177 (28%), Positives = 77/177 (43%), Gaps = 8/177 (4%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
T L L R +D++ L ++ L L+ H T M G TH Q A PI+ G + + S
Sbjct: 105 TALVLQLRDALDLLERDLDALLDALARLAATHRDTPMVGRTHLQHALPITFGLKVAVWLS 164
Query: 64 MFQRDINRLIDCRKRVNISPLGSAA--LAG-TTHHIN-RYLTAKLLDFEKPSENSLDSIS 119
R RL + R RV + G AA LA + + A L P ++ +
Sbjct: 165 ELLRHRERLDELRPRVLVVQFGGAAGTLASLGDQGLAVQEALAAELGLGVP---AIPWHT 221
Query: 120 DRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTG-SSIMPQKKNP 175
RD + E S L+ L +I+ + + M + + P + G SS MP K+NP
Sbjct: 222 ARDRIAELASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHKRNP 278
Score = 55.3 bits (134), Expect = 3e-08
Identities = 52/216 (24%), Positives = 86/216 (39%), Gaps = 37/216 (17%)
Query: 216 SDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTG-SSIMPQKKNPDV 274
+ RD + E S L+ L +I+ + + M + + P + G SS MP K+NP
Sbjct: 221 TARDRIAELASFLALLTGTLGKIARDVYLLMQTEIGEVAEPFAKGRGGSSTMPHKRNPVG 280
Query: 275 LELIRGKTGRIYANLINILTTMKCQTLAYNKD-----LQEDKLPLFDTVDNIIMCLVASG 329
ELI R+ +L M + +D + LP + L+ASG
Sbjct: 281 CELIVALARRVPGLAALLLDAMV---QEHERDAGAWHAEWIALPE--------IFLLASG 329
Query: 330 KLIEKATF-------NEQEMYET--AIKGFSISTDV----ADYLVKKGVPFRTSHEIVGS 376
L E+A F NE M G +S V A L ++ +H++V
Sbjct: 330 AL-EQAEFLLSGLEVNEDRMRANLDLTGGLILSEAVMMALAPKLGRQ-----EAHDLVYE 383
Query: 377 IIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILC 412
E+ + +++ L E +Y+SD+ +D L
Sbjct: 384 ACMRAVEEGRPLREV-LLEDPEVAAYLSDEELDALL 418
>gnl|CDD|235791 PRK06389, PRK06389, argininosuccinate lyase; Provisional.
Length = 434
Score = 77.2 bits (190), Expect = 3e-15
Identities = 56/180 (31%), Positives = 89/180 (49%), Gaps = 6/180 (3%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
DL L+ I I ++L +IK + + K +PG+THF+ A P+++ Y+ S
Sbjct: 112 ADLNLFIIDKIIEIEKILYEIIKVIPGFN---LKGRLPGYTHFRQAMPMTVNTYINYIKS 168
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDF 123
+ IN L + P G + G+ + ++LL EK +N + S S
Sbjct: 169 ILYHHINNLDSFLMDLREMPYGYGSGYGSPSSVKFNQMSELLGMEKNIKNPVYSSSLYIK 228
Query: 124 VIEFISTCCL-IVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQ 182
IE IS + + LSRI ++ II+ +T+P+ F TGSS+MP K+NPD +L Q
Sbjct: 229 TIENISYLISSLAVDLSRICQDIIIYYEN--GIITIPDEFTTGSSLMPNKRNPDYLELFQ 286
Score = 68.4 bits (167), Expect = 2e-12
Identities = 54/186 (29%), Positives = 88/186 (47%), Gaps = 5/186 (2%)
Query: 199 AKLLDFEKPSENSLDSISDRDFVIEFISTCCL-IVMHLSRISEEFIIFMNPQFNFLTLPE 257
++LL EK +N + S S IE IS + + LSRI ++ II+ +T+P+
Sbjct: 207 SELLGMEKNIKNPVYSSSLYIKTIENISYLISSLAVDLSRICQDIIIYYEN--GIITIPD 264
Query: 258 SFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDT 317
F TGSS+MP K+NPD LEL +G + L I + +T Y++D Q K
Sbjct: 265 EFTTGSSLMPNKRNPDYLELFQGIAAESISVLSFIAQSELNKTTGYHRDFQIVKDSTISF 324
Query: 318 VDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSI 377
++N L+ L+ F E IK +T A K G+ +++++ +G+
Sbjct: 325 INNFERILLGLPDLLYNIKFEITN--EKNIKNSVYATYNAWLAFKNGMDWKSAYAYIGNK 382
Query: 378 IKYCNE 383
I+
Sbjct: 383 IREGEV 388
>gnl|CDD|176464 cd01360, Adenylsuccinate_lyase_1, Adenylsuccinate lyase
(ASL)_subgroup 1. This subgroup contains bacterial and
archeal proteins similar to ASL, a member of the Lyase
class I family. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. ASL catalyzes two steps in the de novo purine
biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 387
Score = 76.4 bits (189), Expect = 4e-15
Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 12/178 (6%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
T L L R+ +DII++ L +++ L + +H T+M G TH A+P + G + +
Sbjct: 97 TALALQLREALDIILKDLKELLEVLKKKALEHKDTVMVGRTHGIHAEPTTFGLKFALWYA 156
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGTTHHIN---RYLTAKLLDFEKPSENSLDSISD 120
F+R + RL + R+R+ + + A GT ++ A+ L KP S +
Sbjct: 157 EFKRHLERLKEARERILVGKISGA--VGTYANLGPEVEERVAEKLGL-KPEPIS-TQVIQ 212
Query: 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL---TGSSIMPQKKNP 175
RD E++ST LI L +I+ E + + E F GSS MP K+NP
Sbjct: 213 RDRHAEYLSTLALIASTLEKIATEIRHLQRTEVLEVE--EPFSKGQKGSSAMPHKRNP 268
Score = 34.5 bits (80), Expect = 0.12
Identities = 43/173 (24%), Positives = 73/173 (42%), Gaps = 29/173 (16%)
Query: 218 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL---TGSSIMPQKKNPDV 274
RD E++ST LI L +I+ E + + E F GSS MP K+NP +
Sbjct: 213 RDRHAEYLSTLALIASTLEKIATEIRHLQRTEVLEVE--EPFSKGQKGSSAMPHKRNPIL 270
Query: 275 LELIRGKTGRIYANLI--NILTTMKCQTLAYNKDLQEDKLPLFDTVDNIIM---CLVAS- 328
E I G A +I N++ ++ L + +D+ +V+ +I+ ++
Sbjct: 271 SENICG-----LARVIRSNVIPALENVALWHERDISH------SSVERVILPDATILLDY 319
Query: 329 -----GKLIEKATFNEQEMYETA--IKGFSISTDVADYLVKKGVPFRTSHEIV 374
+++E + M KG S V LV+KG+ ++EIV
Sbjct: 320 ILRRMTRVLENLVVYPENMRRNLNLTKGLIFSQRVLLALVEKGMSREEAYEIV 372
>gnl|CDD|176462 cd01357, Aspartase, Aspartase. This subgroup contains Escherichia
coli aspartase (L-aspartate ammonia-lyase), Bacillus
aspartase and related proteins. It is a member of the
Lyase class I family, which includes both aspartase
(L-aspartate ammonia-lyase) and fumarase class II
enzymes. Members of this family for the most part
catalyze similar beta-elimination reactions in which a
C-N or C-O bond is cleaved with the release of fumarate
as one of the products. These proteins are active as
tetramers. The four active sites of the homotetrameric
enzyme are each formed by residues from three different
subunits. Aspartase catalyzes the reversible deamination
of aspartic acid.
Length = 450
Score = 70.2 bits (173), Expect = 5e-13
Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 26/180 (14%)
Query: 17 IIELLLTMIKHLTDL-------SDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDI 69
+I LL ++ L L + + A + G T Q A P++LG AYA+ +RD
Sbjct: 148 LILLLRKLLDALAALQEAFQAKAREFADVLKMGRTQLQDAVPMTLGQEFGAYATALKRDR 207
Query: 70 NRLIDCRKR---VNISPLGSA------ALAGTTHHINRYLTAKLLDFE-KPSENSLDSIS 119
R+ R+R VN+ G+A A G + L +++ K +EN +D+
Sbjct: 208 ARIYKARERLREVNLG--GTAIGTGINAPPGYIELVVEKL-SEITGLPLKRAENLIDATQ 264
Query: 120 DRDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQ--FNFLTLPESFLTGSSIMPQKKNP 175
+ D +E + + LS+I+ + + ++ P+ + LP GSSIMP K NP
Sbjct: 265 NTDAFVEVSGALKRLAVKLSKIAND-LRLLSSGPRAGLGEINLPA-VQPGSSIMPGKVNP 322
Score = 32.1 bits (74), Expect = 0.69
Identities = 48/208 (23%), Positives = 85/208 (40%), Gaps = 42/208 (20%)
Query: 206 KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQ--FNFLTLPESFLT 261
K +EN +D+ + D +E + + LS+I+ + + ++ P+ + LP
Sbjct: 254 KRAENLIDATQNTDAFVEVSGALKRLAVKLSKIAND-LRLLSSGPRAGLGEINLPA-VQP 311
Query: 262 GSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQT-----------LAYNKDLQED 310
GSSIMP K NP + E++ ++ N + I TM + +AYN
Sbjct: 312 GSSIMPGKVNPVIPEVVNQVAFQVIGNDLTI--TMAAEAGQLELNVFEPVIAYN------ 363
Query: 311 KLPLFDTVD---NIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPF 367
L +++D N + L + I+ T NE+ E I T + Y+
Sbjct: 364 ---LLESIDILTNAVRTLRE--RCIDGITANEERCREYVENSIGIVTALNPYI------- 411
Query: 368 RTSHEIVGSIIKYCNEKHKTFKDLSLAE 395
+E I K E ++ ++L L E
Sbjct: 412 --GYEAAAEIAKEALETGRSVRELVLEE 437
>gnl|CDD|176468 cd01596, Aspartase_like, aspartase (L-aspartate ammonia-lyase) and
fumarase class II enzymes. This group contains
aspartase (L-aspartate ammonia-lyase), fumarase class II
enzymes, and related proteins. It is a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. Aspartase catalyzes the
reversible deamination of aspartic acid. Fumarase
catalyzes the reversible hydration/dehydration of
fumarate to L-malate during the Krebs cycle.
Length = 450
Score = 69.0 bits (170), Expect = 1e-12
Identities = 49/177 (27%), Positives = 83/177 (46%), Gaps = 23/177 (12%)
Query: 17 IIELLLTMIKHLTD----LSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRL 72
++E LL ++ L D +++ A + G TH Q A P++LG YA+ RDI R+
Sbjct: 151 LLERLLPALEQLQDALDAKAEEFADIVKIGRTHLQDAVPLTLGQEFSGYAAQLARDIARI 210
Query: 73 IDCRKRVNISPLGSAALAGT---TH-----HINRYLTAKL--LDFEKPSENSLDSISDRD 122
+R+ LG A+ GT + L A+L L F + N ++ + D
Sbjct: 211 EAALERLRELNLGGTAV-GTGLNAPPGYAEKVAAEL-AELTGLPF-VTAPNLFEATAAHD 267
Query: 123 FVIEFISTCCLIVMHLSRISEEFIIFMN--PQ--FNFLTLPESFLTGSSIMPQKKNP 175
++E + + LS+I+ + + ++ P+ + LP + GSSIMP K NP
Sbjct: 268 ALVEVSGALKTLAVSLSKIAND-LRLLSSGPRAGLGEINLPAN-QPGSSIMPGKVNP 322
Score = 30.1 bits (69), Expect = 2.6
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 7/75 (9%)
Query: 202 LDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQ--FNFLTLPE 257
L F + N ++ + D ++E + + LS+I+ + + ++ P+ + LP
Sbjct: 251 LPF-VTAPNLFEATAAHDALVEVSGALKTLAVSLSKIAND-LRLLSSGPRAGLGEINLPA 308
Query: 258 SFLTGSSIMPQKKNP 272
+ GSSIMP K NP
Sbjct: 309 N-QPGSSIMPGKVNP 322
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 67.0 bits (164), Expect = 5e-12
Identities = 48/179 (26%), Positives = 77/179 (43%), Gaps = 11/179 (6%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
T L L R ++II+ L +I L DL+ ++ T+M G TH Q A+P +LG +A
Sbjct: 103 TALALLLRDALEIILPKLKQLIDRLKDLAVEYKDTVMLGRTHGQHAEPTTLGKKFALWAD 162
Query: 64 MFQRDINRLIDCRKRVNIS----PLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSIS 119
+R + RL+ ++R+ + +G+ A A + L KP S
Sbjct: 163 EMKRQLERLLQAKERIKVGGISGAVGTHAAAYPLVEEVEERVTEFLGL-KPVPISTQIEP 221
Query: 120 DRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLT---GSSIMPQKKNP 175
RD E + L+ L + + + + + E F GSS MP K+NP
Sbjct: 222 -RDRHAELLDALALLATTLEKFAVDIRLLQR--TEHFEVEEPFGKGQVGSSAMPHKRNP 277
Score = 37.3 bits (87), Expect = 0.016
Identities = 45/226 (19%), Positives = 86/226 (38%), Gaps = 25/226 (11%)
Query: 218 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLT---GSSIMPQKKNPDV 274
RD E + L+ L + + + + + E F GSS MP K+NP
Sbjct: 222 RDRHAELLDALALLATTLEKFAVDIRLLQR--TEHFEVEEPFGKGQVGSSAMPHKRNPID 279
Query: 275 LELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDNIIMCLVA---SGKL 331
E + G I + L L + L + +DL + + D+ I+ + + K+
Sbjct: 280 FENVCGLARVIRSVLSPALENV---PLWHERDLTDSSVERIILPDSFILADIMLKTTLKV 336
Query: 332 IEKATFN----EQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIV-GSIIKYCNEKHK 386
++K N + + T G S V LV++G+ ++EIV +
Sbjct: 337 VKKLVVNPENILRNLELT--LGLIASERVLIALVERGMGREEAYEIVRELAMGAAEVDEP 394
Query: 387 TFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIGGTSPEQVK 432
+ L + Y+ ++ + L + + +I G + E V+
Sbjct: 395 DLLEF-LLADERITKYLKEEELAEL-----LDPETYI-GNAREIVE 433
>gnl|CDD|183992 PRK13353, PRK13353, aspartate ammonia-lyase; Provisional.
Length = 473
Score = 64.2 bits (157), Expect = 4e-11
Identities = 44/188 (23%), Positives = 79/188 (42%), Gaps = 23/188 (12%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
T +R+ ++ ++ + + + + + I G T Q A PI+LG AYA
Sbjct: 147 TAIRIAALNLLEGLLAAMGALQDVFEEKAAEFDHVIKMGRTQLQDAVPITLGQEFSAYAR 206
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGT---THHINRYLTAKLLDFEK-------PSEN 113
+RD R+ R+ + LG A+ GT Y+ + +E+
Sbjct: 207 ALKRDRKRIQQAREHLYEVNLGGTAV-GTGLNADP--EYIERVVKHLAAITGLPLVGAED 263
Query: 114 SLDSISDRDFVIEF---ISTCCLIVMHLSRISEEF-IIFMNPQ--FNFLTLPESFLTGSS 167
+D+ + D +E + C ++LS+I+ + ++ P+ + LP GSS
Sbjct: 264 LVDATQNTDAFVEVSGALKVC---AVNLSKIANDLRLLSSGPRTGLGEINLPA-VQPGSS 319
Query: 168 IMPQKKNP 175
IMP K NP
Sbjct: 320 IMPGKVNP 327
Score = 31.9 bits (73), Expect = 0.65
Identities = 21/78 (26%), Positives = 40/78 (51%), Gaps = 10/78 (12%)
Query: 207 PSENSLDSISDRDFVIEF---ISTCCLIVMHLSRISEEF-IIFMNPQ--FNFLTLPESFL 260
+E+ +D+ + D +E + C ++LS+I+ + ++ P+ + LP
Sbjct: 260 GAEDLVDATQNTDAFVEVSGALKVC---AVNLSKIANDLRLLSSGPRTGLGEINLPA-VQ 315
Query: 261 TGSSIMPQKKNPDVLELI 278
GSSIMP K NP + E++
Sbjct: 316 PGSSIMPGKVNPVMPEVV 333
>gnl|CDD|237031 PRK12273, aspA, aspartate ammonia-lyase; Provisional.
Length = 472
Score = 61.7 bits (151), Expect = 3e-10
Identities = 47/182 (25%), Positives = 75/182 (41%), Gaps = 30/182 (16%)
Query: 17 IIELLLTMIKHLTDLSDK-HAK------TIMPGFTHFQIAQPISLGHYLLAYASMFQRDI 69
++ L ++ L L + AK + G T Q A P++LG AYA D
Sbjct: 155 LLLSLRKLLDALEQLQEAFEAKAKEFADILKMGRTQLQDAVPMTLGQEFGAYAVALAEDR 214
Query: 70 NRLIDCRKR---VNISPLGSAALAGT--------THHINRYLTAKLLDFE-KPSENSLDS 117
RL + VN LG+ A GT + L A++ P+E+ +++
Sbjct: 215 KRLYRAAELLREVN---LGATA-IGTGLNAPPGYIELVVEKL-AEITGLPLVPAEDLIEA 269
Query: 118 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQ--FNFLTLPESFLTGSSIMPQKK 173
D +E + + LS+I + + ++ P+ N + LP GSSIMP K
Sbjct: 270 TQDTGAFVEVSGALKRLAVKLSKICND-LRLLSSGPRAGLNEINLPA-VQAGSSIMPGKV 327
Query: 174 NP 175
NP
Sbjct: 328 NP 329
Score = 30.5 bits (70), Expect = 1.9
Identities = 44/179 (24%), Positives = 65/179 (36%), Gaps = 56/179 (31%)
Query: 262 GSSIMPQKKNPDVLELIRGKTGRIYANLI------NILT-TMKCQ-----------TLAY 303
GSSIMP K NP + E N + N T TM + +AY
Sbjct: 319 GSSIMPGKVNPVIPE---------VVNQVCFQVIGNDTTVTMAAEAGQLELNVMEPVIAY 369
Query: 304 NKDLQEDKLPLFDTVDNIIM---CLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYL 360
N LF+++ I+ C K I+ T NE+ E I T + Y+
Sbjct: 370 N---------LFESIS--ILTNACRTLREKCIDGITANEERCREYVENSIGIVTALNPYI 418
Query: 361 VKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIID-ILCIENSIK 418
G +E I K E K+ ++L L ++++ +D IL EN
Sbjct: 419 ---G------YENAAEIAKEALETGKSVRELVLE-----RGLLTEEELDDILSPENMTH 463
>gnl|CDD|236283 PRK08540, PRK08540, adenylosuccinate lyase; Reviewed.
Length = 449
Score = 61.5 bits (150), Expect = 3e-10
Identities = 49/182 (26%), Positives = 76/182 (41%), Gaps = 11/182 (6%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
+I T L + ++I+ E L + L +++H T+ G TH Q A P + G
Sbjct: 106 IIDTATALQLKDSLEILEEKLKKLRGVLLKKAEEHKNTVCIGRTHGQHAVPTTYGMRFAI 165
Query: 61 YASMFQRDINRLIDCRKRVNISPL----GSAALAGTTHHINRYLTAKLLDFEKPSENSLD 116
+AS QR + RL + RV + + G+ A G + ++L KP S +
Sbjct: 166 WASEIQRHLERLEQLKPRVCVGQMTGAVGTQAAFGEKGIEIQKRVMEILGL-KPVLIS-N 223
Query: 117 SISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESF---LTGSSIMPQKK 173
+ RD EF+ I L +I E + + E F GSS MP K+
Sbjct: 224 QVIQRDRHAEFMMFLANIATTLDKIGLEIRNLQRTE--IGEVEEEFGKKQVGSSTMPHKR 281
Query: 174 NP 175
NP
Sbjct: 282 NP 283
Score = 47.6 bits (114), Expect = 7e-06
Identities = 54/232 (23%), Positives = 94/232 (40%), Gaps = 32/232 (13%)
Query: 218 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESF---LTGSSIMPQKKNPDV 274
RD EF+ I L +I E + + E F GSS MP K+NP
Sbjct: 228 RDRHAEFMMFLANIATTLDKIGLEIRNLQRTEI--GEVEEEFGKKQVGSSTMPHKRNPIT 285
Query: 275 LELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDNIIM---------CL 325
E I G + +N+ L L +DL + + II L
Sbjct: 286 SEQICGLARVVRSNVEPALLNN---PLWDERDLTNS------SCERIIFPESCVLTDHIL 336
Query: 326 VASGKLIEKATFNEQEMYE--TAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNE 383
K++E FN + + KG ++ V L K+G+ + +HE+V +E
Sbjct: 337 KLMIKVLEGLRFNPENIRRNLELTKGLIMAEAVMIELAKRGMGRQEAHELVRQAAMKAHE 396
Query: 384 KHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIGGTSPEQVKITV 435
+ + K++ L E + Y++++ ++ L + + +I GT+PE V+ +
Sbjct: 397 EGRHLKEV-LLEDEEVMKYLTEEELEEL-----LDPETYI-GTAPEIVENVI 441
>gnl|CDD|223958 COG1027, AspA, Aspartate ammonia-lyase [Amino acid transport and
metabolism].
Length = 471
Score = 60.0 bits (146), Expect = 9e-10
Identities = 45/179 (25%), Positives = 76/179 (42%), Gaps = 24/179 (13%)
Query: 17 IIELLLTMIKHLTDLSDK-------HAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDI 69
+ + L +I L DL + A + G T Q A P++LG A+A + DI
Sbjct: 154 VYKSLRKLIDALEDLIEAFERKAKEFADILKMGRTQLQDAVPMTLGQEFGAFAVALKEDI 213
Query: 70 NRLIDCRKRVNISPLGSAALAGT---THH-----INRYLTAKLLDFE-KPSENSLDSISD 120
R+ + + LG A+ GT + + L A++ P+EN +++ D
Sbjct: 214 KRIYRAAELLLEVNLGGTAI-GTGINAPKGYIELVVKKL-AEVTGLPLVPAENLIEATQD 271
Query: 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQ--FNFLTLPESFLTGSSIMPQKKNP 175
+ + + LS+I + + ++ P+ N + LP GSSIMP K NP
Sbjct: 272 TGAFVMVSGALKRLAVKLSKICND-LRLLSSGPRAGLNEINLPA-VQAGSSIMPGKVNP 328
Score = 37.7 bits (88), Expect = 0.010
Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 42/208 (20%)
Query: 206 KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQ--FNFLTLPESFLT 261
P+EN +++ D + + + LS+I + + ++ P+ N + LP
Sbjct: 260 VPAENLIEATQDTGAFVMVSGALKRLAVKLSKICND-LRLLSSGPRAGLNEINLPA-VQA 317
Query: 262 GSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQT-----------LAYNKDLQED 310
GSSIMP K NP + E++ ++ N I TM + +AY
Sbjct: 318 GSSIMPGKVNPVIPEVVNQVCFKVIGNDTTI--TMAAEAGQLQLNVMEPVIAYA------ 369
Query: 311 KLPLFDTVDNIIM---CLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPF 367
LF+++ I+ C K I+ T NE+ E I T + Y+
Sbjct: 370 ---LFESIS--ILTNACRNLREKCIDGITANEERCEEYVENSIGIVTALNPYI------- 417
Query: 368 RTSHEIVGSIIKYCNEKHKTFKDLSLAE 395
+E I K E K+ +++ L
Sbjct: 418 --GYENAAIIAKEALETGKSVREVVLER 443
>gnl|CDD|233863 TIGR02426, protocat_pcaB, 3-carboxy-cis,cis-muconate
cycloisomerase. Members of this family are
3-carboxy-cis,cis-muconate cycloisomerase, the enzyme
the catalyzes the second step in the protocatechuate
degradation to beta-ketoadipate and then to succinyl-CoA
and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate,
and vanillate all can be converted in one step to
protocatechuate. All members of the seed alignment for
this model were chosen from within protocatechuate
degradation operons of at least three genes of the
pathway, from genomes with the complete pathway through
beta-ketoadipate [Energy metabolism, Other].
Length = 338
Score = 59.4 bits (144), Expect = 1e-09
Identities = 56/212 (26%), Positives = 80/212 (37%), Gaps = 40/212 (18%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
I T L L R +D+++ L + L DL+ +H T M G T Q A P + G +
Sbjct: 103 IDTSLMLQLRDALDLLLADLGRLADALADLAARHRDTPMTGRTLLQQAVPTTFGLKAAGW 162
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAA--LAGTTHH---INRYLTAKLLDFEKPSENSLD 116
+ R +RL R R G AA LA + L A L P +L
Sbjct: 163 LAAVLRARDRLAALRTRALPLQFGGAAGTLAALGTRGGAVAAAL-AARLGLPLP---ALP 218
Query: 117 SISDRDFVIEF---ISTCC---------LIVMHLSRISEEFIIFMNPQFNFLTLPESFLT 164
+ RD + EF ++ + ++ + + E F E+
Sbjct: 219 WHTQRDRIAEFGSALALVAGALGKIAGDIALLSQTEVGEVF--------------EAGGG 264
Query: 165 GSSIMPQKKNPDVKDLRQRAA-----LAGTTH 191
GSS MP K+NP L AA LA T H
Sbjct: 265 GSSAMPHKRNPVGAALLAAAARRVPGLAATLH 296
Score = 34.3 bits (79), Expect = 0.12
Identities = 17/96 (17%), Positives = 33/96 (34%), Gaps = 26/96 (27%)
Query: 216 SDRDFVIEF---ISTCC---------LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGS 263
+ RD + EF ++ + ++ + + E F E+ GS
Sbjct: 221 TQRDRIAEFGSALALVAGALGKIAGDIALLSQTEVGEVF--------------EAGGGGS 266
Query: 264 SIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQ 299
S MP K+NP L+ R+ + + +
Sbjct: 267 SAMPHKRNPVGAALLAAAARRVPGLAATLHAALPQE 302
>gnl|CDD|235792 PRK06390, PRK06390, adenylosuccinate lyase; Provisional.
Length = 451
Score = 58.4 bits (141), Expect = 3e-09
Identities = 47/174 (27%), Positives = 73/174 (41%), Gaps = 24/174 (13%)
Query: 16 IIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDC 75
II + + +++ L L D++ + M G TH Q A PI+ G Y R ++RL +
Sbjct: 120 IIKDDIKNLMETLIKLIDEYKDSPMMGRTHGQHASPITFGLKFAVYLDEMSRHLDRLTEM 179
Query: 76 RKRVN----ISPLGSAALAGTTHHINRYLTAKLLDFEK--------PSENSLDSISDRDF 123
R + P+G+ A G LD + SE I +RD
Sbjct: 180 GDRAFAGKVLGPVGTGAALG----------KDALDIQNRVMEILGIYSEIGSTQIVNRDR 229
Query: 124 VIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLT--LPESFLTGSSIMPQKKNP 175
IE++S I + L +I+ E P+ + ++ E GSS MP K NP
Sbjct: 230 YIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEYFDEESQVGSSSMPSKVNP 283
Score = 35.7 bits (82), Expect = 0.054
Identities = 48/208 (23%), Positives = 77/208 (37%), Gaps = 11/208 (5%)
Query: 208 SENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLT--LPESFLTGSSI 265
SE I +RD IE++S I + L +I+ E P+ + ++ E GSS
Sbjct: 217 SEIGSTQIVNRDRYIEYLSVINGISVTLEKIATEIRNLQRPEIDEVSEYFDEESQVGSSS 276
Query: 266 MPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDNIIM-- 323
MP K NP E + + R +L I+ + + +DL L F I+
Sbjct: 277 MPSKVNPINSENVVSLS-RFIRSL--IIPEYEAGVTWHERDLTNSALERFTIPYASILID 333
Query: 324 -CLVASGKLIEKATFNEQEMYETAIKGFSI-STDVADYLVKKGVPFRTSHEIVGSIIKYC 381
L ++ E E+ SI S + L G+P + +HE V
Sbjct: 334 YVLYNMNDVLSHLIIKEDEIRRNLESDDSIMSESIVRALTLSGMPRQDAHEFVRRASMEA 393
Query: 382 NEKHKTFKDLSLAELKTFHSYISDDIID 409
K+ K + YI + +D
Sbjct: 394 RSNGKSLKSSLIEAGIL--KYIDEKTLD 419
>gnl|CDD|180954 PRK07380, PRK07380, adenylosuccinate lyase; Provisional.
Length = 431
Score = 58.5 bits (142), Expect = 3e-09
Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 14/179 (7%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
T L L +D+++E L +I+ + + +H T+M G +H A+PI+ G L + +
Sbjct: 100 TGLALQLVASLDLLLEELEDLIQAIRYQAREHRNTVMIGRSHGIHAEPITFGFKLAGWLA 159
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGTTHHIN---RYLTAKLLDFEKPSENSLDSISD 120
R+ RL+ R+ + + + A GT + + +T + L + P S IS
Sbjct: 160 ETLRNRERLVRLREDIAVGQISGA--VGTYANTDPRVEAITCQKLGLK-PDTASTQVIS- 215
Query: 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ-FNFLTLPESFLT---GSSIMPQKKNP 175
RD E++ T L+ L R + E N Q + L + E F GSS MP K+NP
Sbjct: 216 RDRHAEYVQTLALVGASLERFATE---IRNLQRTDVLEVEEYFAKGQKGSSAMPHKRNP 271
Score = 30.8 bits (70), Expect = 1.5
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 9/88 (10%)
Query: 197 LTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ-FNFLTL 255
+T + L + P S IS RD E++ T L+ L R + E N Q + L +
Sbjct: 197 ITCQKLGLK-PDTASTQVIS-RDRHAEYVQTLALVGASLERFATEI---RNLQRTDVLEV 251
Query: 256 PESFLTG---SSIMPQKKNPDVLELIRG 280
E F G SS MP K+NP E + G
Sbjct: 252 EEYFAKGQKGSSAMPHKRNPIRSERLSG 279
>gnl|CDD|213564 TIGR00839, aspA, aspartate ammonia-lyase. This enzyme, aspartate
ammonia-lyase, shows local homology to a number of other
lyases, as modeled by Pfam model pfam00206. Fumarate
hydratase scores as high as 570 bits against this model
[Energy metabolism, Amino acids and amines].
Length = 468
Score = 56.4 bits (136), Expect = 1e-08
Identities = 45/178 (25%), Positives = 79/178 (44%), Gaps = 17/178 (9%)
Query: 18 IELLLTMIKHLTDLSDKHAK----TIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLI 73
+ L+ I L D ++ AK + G T Q A P++LG A++ + + ++ +
Sbjct: 155 LIKLVDAINQLRDGFEQKAKEFADILKMGRTQLQDAVPMTLGQEFEAFSILLEEEVKNIK 214
Query: 74 DCRKRVNISPLGSAALAGT---THHINRYLTAKLLDFEK-----PSENSLDSISDRDFVI 125
+ + LG+ A+ GT T L K L P+EN +++ SD +
Sbjct: 215 RTAELLLEVNLGATAI-GTGLNTPPEYSPLVVKKLAEVTGLPCVPAENLIEATSDCGAYV 273
Query: 126 EFISTCCLIVMHLSRISEEF-IIFMNPQ--FNFLTLPESFLTGSSIMPQKKNPDVKDL 180
+ + +S+I + ++ P+ N + LPE GSSIMP K NP V ++
Sbjct: 274 MVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPE-LQAGSSIMPAKVNPVVPEV 330
Score = 34.8 bits (80), Expect = 0.078
Identities = 46/227 (20%), Positives = 91/227 (40%), Gaps = 28/227 (12%)
Query: 207 PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEF-IIFMNPQ--FNFLTLPESFLTGS 263
P+EN +++ SD + + + +S+I + ++ P+ N + LPE GS
Sbjct: 258 PAENLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPE-LQAGS 316
Query: 264 SIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDNIIM 323
SIMP K NP V E++ ++ N + + L N +F+++ I+
Sbjct: 317 SIMPAKVNPVVPEVVNQVCFKVIGNDTTVTLAAEAGQLQLNVMEPVIGQAMFESIH--IL 374
Query: 324 ---CLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKY 380
C + K + T N++ I T + ++ H + K
Sbjct: 375 TNACYNLTDKCVNGITANKEICEGYVFNSIGIVTYLNPFI---------GHHNGDIVGKI 425
Query: 381 CNEKHKTFKDLSLAELKTFHSYISDDIID-ILCIEN----SIKFKNH 422
C E K+ +++ L ++++ +D I +EN + K K +
Sbjct: 426 CAETGKSVREVVLE-----KGLLTEEELDDIFSVENLMHPAYKAKRY 467
>gnl|CDD|223192 COG0114, FumC, Fumarase [Energy production and conversion].
Length = 462
Score = 53.8 bits (130), Expect = 9e-08
Identities = 44/171 (25%), Positives = 75/171 (43%), Gaps = 23/171 (13%)
Query: 21 LLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVN 80
L +IK L +++ A + G TH Q A P++LG YA+ + + R+ +
Sbjct: 163 LKHLIKTLAAKAEEFADVVKIGRTHLQDATPLTLGQEFSGYAAQLEHALERIEASLPHLY 222
Query: 81 ISPLGSAALAGT---TH---------HINRYLTAKLLDFEKPSENSLDSISDRDFVIEFI 128
+G A GT H + LT L F + N ++++ D ++E
Sbjct: 223 ELAIGGTA-VGTGLNAHPEFGEKVAEELAE-LTG--LPF-VTAPNKFEALAAHDALVEAS 277
Query: 129 STCCLIVMHLSRISEEFIIFMN--PQ--FNFLTLPESFLTGSSIMPQKKNP 175
+ + L +I+ + I ++ P+ + LPE+ GSSIMP K NP
Sbjct: 278 GALRTLAVSLMKIAND-IRWLGSGPRCGLGEIELPEN-EPGSSIMPGKVNP 326
Score = 29.9 bits (68), Expect = 2.8
Identities = 13/24 (54%), Positives = 15/24 (62%), Gaps = 1/24 (4%)
Query: 253 LTLPESFLTGSSIMPQKKNPDVLE 276
+ LPE+ GSSIMP K NP E
Sbjct: 308 IELPEN-EPGSSIMPGKVNPTQCE 330
>gnl|CDD|176465 cd01362, Fumarase_classII, Class II fumarases. This subgroup
contains Escherichia coli fumarase C, human
mitochondrial fumarase, and related proteins. It is a
member of the Lyase class I family. Members of this
family for the most part catalyze similar
beta-elimination reactions in which a C-N or C-O bond is
cleaved with the release of fumarate as one of the
products. These proteins are active as tetramers. The
four active sites of the homotetrameric enzyme are each
formed by residues from three different subunits.
Fumarase catalyzes the reversible hydration/dehydration
of fumarate to L-malate during the Krebs cycle.
Length = 455
Score = 53.7 bits (130), Expect = 1e-07
Identities = 51/188 (27%), Positives = 78/188 (41%), Gaps = 45/188 (23%)
Query: 17 IIELLLTMIKHLTDL----SDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRL 72
+ E LL +KHL D +D+ + G TH Q A P++LG YA+ + I R+
Sbjct: 152 LQERLLPALKHLIDALDAKADEFKDIVKIGRTHLQDATPLTLGQEFSGYAAQLEHAIARI 211
Query: 73 IDCRKRVNISPLGSAALAGT---TH---------HINRYLTAKLLDFEKPSENSLDSISD 120
R+ LG A+ GT H + LT L F + N ++++
Sbjct: 212 EAALPRLYELALGGTAV-GTGLNAHPGFAEKVAAELAE-LTG--LPF-VTAPNKFEALAA 266
Query: 121 RDFVIEFISTCCLIVMH---------LSRISEEFIIFMN--PQ--FNFLTLPESFLTGSS 167
D L+ L +I+ + I ++ P+ L+LPE+ GSS
Sbjct: 267 HD---------ALVEASGALKTLAVSLMKIAND-IRWLGSGPRCGLGELSLPENEP-GSS 315
Query: 168 IMPQKKNP 175
IMP K NP
Sbjct: 316 IMPGKVNP 323
Score = 29.0 bits (66), Expect = 6.2
Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 253 LTLPESFLTGSSIMPQKKNP 272
L+LPE+ GSSIMP K NP
Sbjct: 305 LSLPENEP-GSSIMPGKVNP 323
>gnl|CDD|237743 PRK14515, PRK14515, aspartate ammonia-lyase; Provisional.
Length = 479
Score = 52.3 bits (125), Expect = 3e-07
Identities = 48/192 (25%), Positives = 88/192 (45%), Gaps = 17/192 (8%)
Query: 18 IELLLTMIKHLTDLSDKHAK----TIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLI 73
+E LL + ++ D+ + A+ I G TH Q A PI LG AY+ + +RD+ R+
Sbjct: 163 LEGLLQTMGYMHDVFELKAEQFDHVIKMGRTHLQDAVPIRLGQEFKAYSRVLERDMKRIQ 222
Query: 74 DCRKRVNISPLGSAALAGTTHHINRYL---TAKLLDFE----KPSENSLDSISDRDFVIE 126
R+ + +G+ A+ + Y+ L +E+ +D+ + D E
Sbjct: 223 QSRQHLYEVNMGATAVGTGLNADPEYIEAVVKHLAAISELPLVGAEDLVDATQNTDAYTE 282
Query: 127 FISTCCLIVMHLSRISEEF-IIFMNPQFNF--LTLPESFLTGSSIMPQKKNPDVKDLRQR 183
+ + +M++S+I+ + ++ P+ + LP GSSIMP K NP + ++ +
Sbjct: 283 VSAALKVCMMNMSKIANDLRLMASGPRVGLAEIMLPAR-QPGSSIMPGKVNPVMPEVINQ 341
Query: 184 AALA--GTTHHI 193
A G H I
Sbjct: 342 IAFQVIGNDHTI 353
>gnl|CDD|181627 PRK09053, PRK09053, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 452
Score = 51.9 bits (125), Expect = 3e-07
Identities = 52/190 (27%), Positives = 76/190 (40%), Gaps = 30/190 (15%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
I T L L R +D++ L + L L+ +H T M G T Q A P++LG +
Sbjct: 112 IDTGLVLQLRDALDLLEPDLDRLCDALATLAARHRATPMVGRTWLQQALPVTLGLKFAGW 171
Query: 62 ASMFQRDINRLIDCRKRV----------NISPLGSAALAGTTHHINRYLTAKLLDFEKPS 111
R RL R R ++ LG AL + + L A L P
Sbjct: 172 LDALLRHRQRLAALRPRALVLQFGGAAGTLASLGEQALP-----VAQAL-AAELQLALP- 224
Query: 112 ENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLT------G 165
+L + RD + EF S L+ L +I+ + + M + + E F G
Sbjct: 225 --ALPWHTQRDRIAEFASALGLLAGTLGKIARDVSLLMQTE-----VGEVFEPAAAGKGG 277
Query: 166 SSIMPQKKNP 175
SS MP K+NP
Sbjct: 278 SSTMPHKRNP 287
>gnl|CDD|234779 PRK00485, fumC, fumarate hydratase; Reviewed.
Length = 464
Score = 50.9 bits (123), Expect = 7e-07
Identities = 51/179 (28%), Positives = 81/179 (45%), Gaps = 27/179 (15%)
Query: 17 IIELLLTMIKHLTD-LSDK---HAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRL 72
I+E LL ++HL D L+ K A + G TH Q A P++LG YA+ + I R+
Sbjct: 156 IVERLLPALEHLRDTLAAKAEEFADIVKIGRTHLQDATPLTLGQEFSGYAAQLEHGIERI 215
Query: 73 IDCRKRVNISPLGSAALAGT---TH---------HINRYLTAKLLDFEKPSENSLDSISD 120
+ LG A GT H + LT L F + N ++++
Sbjct: 216 EAALPHLYELALGGTA-VGTGLNAHPGFAERVAEELAE-LTG--LPF-VTAPNKFEALAA 270
Query: 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQ--FNFLTLPESFLTGSSIMPQKKNP 175
D ++E + + L +I+ + I ++ P+ ++LPE+ GSSIMP K NP
Sbjct: 271 HDALVEASGALKTLAVSLMKIAND-IRWLASGPRCGLGEISLPENEP-GSSIMPGKVNP 327
Score = 29.7 bits (68), Expect = 3.3
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 262 GSSIMPQKKNP 272
GSSIMP K NP
Sbjct: 317 GSSIMPGKVNP 327
>gnl|CDD|176471 cd03302, Adenylsuccinate_lyase_2, Adenylsuccinate lyase
(ASL)_subgroup 2. This subgroup contains mainly
eukaryotic proteins similar to ASL, a member of the
Lyase class I family. Members of this family for the
most part catalyze similar beta-elimination reactions in
which a C-N or C-O bond is cleaved with the release of
fumarate as one of the products. These proteins are
active as tetramers. The four active sites of the
homotetrameric enzyme are each formed by residues from
three different subunits. ASL catalyzes two steps in the
de novo purine biosynthesis: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and, the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP). ASL deficiency has
been linked to several pathologies including psychomotor
retardation with autistic features, epilepsy and muscle
wasting.
Length = 436
Score = 49.6 bits (119), Expect = 2e-06
Identities = 43/191 (22%), Positives = 70/191 (36%), Gaps = 30/191 (15%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
TDL + R +D+I+ L +I L + + ++ GFTH+Q AQ ++G +
Sbjct: 103 TDL-IQIRDALDLILPKLAAVIDRLAEFALEYKDLPTLGFTHYQPAQLTTVGKRACLWIQ 161
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLT----------------AKLLDF 107
D+ L R L + GTT +L K F
Sbjct: 162 DLLMDLRNLERLRDD-----LRFRGVKGTTGTQASFLDLFEGDHDKVEALDELVTKKAGF 216
Query: 108 EKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESF---LT 164
+K R I+ ++ + +I+ + I + N + E F
Sbjct: 217 KK-VYPVTGQTYSRKVDIDVLNALSSLGATAHKIATD-IRLLA---NLKEVEEPFEKGQI 271
Query: 165 GSSIMPQKKNP 175
GSS MP K+NP
Sbjct: 272 GSSAMPYKRNP 282
>gnl|CDD|176470 cd01598, PurB, PurB_like adenylosuccinases (adenylsuccinate lyase,
ASL). This subgroup contains EcASL, the product of the
purB gene in Escherichia coli, and related proteins. It
is a member of the Lyase class I family of the Lyase_I
superfamily. Members of the Lyase class I family
function as homotetramers to catalyze similar
beta-elimination reactions in which a Calpha-N or
Calpha-O bond is cleaved with the subsequent release of
fumarate as one of the products. The four active sites
of the homotetrameric enzyme are each formed by residues
from three different subunits. ASL catalyzes two
non-sequential steps in the de novo purine biosynthesis
pathway: the conversion of
5-aminoimidazole-(N-succinylocarboxamide) ribotide
(SAICAR) into 5-aminoimidazole-4-carboxamide ribotide
(AICAR) and; the conversion of adenylsuccinate (SAMP)
into adenosine monophosphate (AMP).
Length = 425
Score = 49.2 bits (118), Expect = 3e-06
Identities = 43/176 (24%), Positives = 67/176 (38%), Gaps = 27/176 (15%)
Query: 15 DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLID 74
++I+ LL +I L L+ ++A M TH Q A P +LG L + +R +L
Sbjct: 119 EVILPLLKEIIDSLKKLAKEYADVPMLSRTHGQPATPTTLGKELAVFVYRLERQYKQLK- 177
Query: 75 CRKRVNISPLGSAALAGTTHHINRYLTA-KLLDFEKPSENSLDS-----------ISDRD 122
I LG G + N +L A +D+ K SE + S I D
Sbjct: 178 -----QIEILG--KFNGAVGNFNAHLVAYPDVDWRKFSEFFVTSLGLTWNPYTTQIEPHD 230
Query: 123 FVIEFISTCCLIVMHLSRISEEFI--IFMNPQFNFLTL-PESFLTGSSIMPQKKNP 175
++ E ++ I + I+ + + GSS MP K NP
Sbjct: 231 YIAELFDALA----RINTILIDLCRDIWGYISLGYFKQKVKKGEVGSSTMPHKVNP 282
>gnl|CDD|168324 PRK05975, PRK05975, 3-carboxy-cis,cis-muconate cycloisomerase;
Provisional.
Length = 351
Score = 46.6 bits (111), Expect = 1e-05
Identities = 50/181 (27%), Positives = 74/181 (40%), Gaps = 17/181 (9%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
I T L L + +I+ L +I L L + + G T Q A PI++ L ++
Sbjct: 112 IDTSLMLRLKAASEILAARLGALIARLDALEATFGQNALMGHTRMQAAIPITVADRLASW 171
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHIN------RYLTAKLLDFE-KPSENS 114
+ R +RL R V G A AGT + R AK L E P +
Sbjct: 172 RAPLLRHRDRLEALRADVFPLQFGGA--AGTLEKLGGKAAAVRARLAKRLGLEDAPQWH- 228
Query: 115 LDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKN 174
S RDF+ +F L+ L + ++ I M + ++L GSS MP K+N
Sbjct: 229 ----SQRDFIADFAHLLSLVTGSLGKFGQD-IALMAQAGDEISLSGG--GGSSAMPHKQN 281
Query: 175 P 175
P
Sbjct: 282 P 282
Score = 29.3 bits (66), Expect = 4.1
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 216 SDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNP 272
S RDF+ +F L+ L + ++ I M + ++L GSS MP K+NP
Sbjct: 229 SQRDFIADFAHLLSLVTGSLGKFGQD-IALMAQAGDEISLSGG--GGSSAMPHKQNP 282
>gnl|CDD|130052 TIGR00979, fumC_II, fumarate hydratase, class II. Putative
fumarases from several species (Mycobacterium
tuberculosis, Streptomyces coelicolor, Pseudomonas
aeruginosa) branch deeply, although within the same
branch of a phylogenetic tree rooted by aspartate
ammonia-lyase sequences, and score between the trusted
and noise cutoffs [Energy metabolism, TCA cycle].
Length = 458
Score = 45.1 bits (107), Expect = 5e-05
Identities = 43/172 (25%), Positives = 74/172 (43%), Gaps = 17/172 (9%)
Query: 17 IIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCR 76
+I L + K L S + A + G TH Q A P++LG Y + + + R+
Sbjct: 157 LIPALENLKKTLDAKSKEFAHIVKIGRTHLQDATPLTLGQEFSGYVAQLEHGLERIAYSL 216
Query: 77 KRVNISPLGSAALAGT---TH-----HINRYLTAKLLDFE-KPSENSLDSISDRDFVIEF 127
+ +G A+ GT TH + + AK + N ++++ D ++E
Sbjct: 217 PHLYELAIGGTAV-GTGLNTHPGFDEKVAEEI-AKETGLPFVTAPNKFEALAAHDAIVEA 274
Query: 128 ISTCCLIVMHLSRISEEFIIFM--NPQFNF--LTLPESFLTGSSIMPQKKNP 175
+ L +I+ + I ++ P+ L +PE+ GSSIMP K NP
Sbjct: 275 HGALKTLAASLMKIAND-IRWLGSGPRCGLGELFIPEN-EPGSSIMPGKVNP 324
>gnl|CDD|236352 PRK08937, PRK08937, adenylosuccinate lyase; Provisional.
Length = 216
Score = 42.3 bits (100), Expect = 2e-04
Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 31/204 (15%)
Query: 235 LSRISEEFIIFMNPQFNFLTLP-ESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINIL 293
L + + E + + + P GSS MP K+NP E I G + + L+ L
Sbjct: 30 LEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNPIGSERITGLARVLRSYLVTAL 89
Query: 294 TTMKCQTLAYNKDLQEDK-----LP--------LFDTVDNIIMCLVASGKLIEKATFNEQ 340
+ L + +DL LP + + NI+ LV + IE+
Sbjct: 90 ENV---PLWHERDLSHSSAERIALPDAFLALDYILNRFVNILENLVVFPENIERN----- 141
Query: 341 EMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFH 400
GF + V LV+KG+ +HE++ + K ++L A+ + F
Sbjct: 142 ---LDKTLGFIATERVLLELVEKGMGREEAHELIREKAMEAWKNQKDLRELLEAD-ERFT 197
Query: 401 SYISDDIIDILCIENSIKFKNHIG 424
++ + +D L + +G
Sbjct: 198 KQLTKEELDELF-----DPEAFVG 216
Score = 28.8 bits (65), Expect = 4.6
Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)
Query: 138 LSRISEEFIIFMNPQFNFLTLP-ESFLTGSSIMPQKKNP 175
L + + E + + + P GSS MP K+NP
Sbjct: 30 LEKFANEIRLLQRSEIREVEEPFAKGQKGSSAMPHKRNP 68
>gnl|CDD|215069 PLN00134, PLN00134, fumarate hydratase; Provisional.
Length = 458
Score = 43.1 bits (102), Expect = 2e-04
Identities = 43/176 (24%), Positives = 72/176 (40%), Gaps = 25/176 (14%)
Query: 17 IIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCR 76
+I L + + L S + + G TH Q A P++LG YA+ + +NR+
Sbjct: 152 LIPALKELHESLRAKSFEFKDIVKIGRTHLQDAVPLTLGQEFSGYATQVKYGLNRV---- 207
Query: 77 KRVNISPLGSAALAGTT------------HHINRYLTAKL--LDFEKPSENSLDSISDRD 122
+ + L A GT I + A+ L F N ++++ D
Sbjct: 208 -QCTLPRLYELAQGGTAVGTGLNTKKGFDEKIAAAV-AEETGLPFVTA-PNKFEALAAHD 264
Query: 123 FVIEFISTCCLIVMHLSRISEEF-IIFMNPQ--FNFLTLPESFLTGSSIMPQKKNP 175
+E + + L +I+ + ++ P+ L LPE+ GSSIMP K NP
Sbjct: 265 AFVELSGALNTVAVSLMKIANDIRLLGSGPRCGLGELNLPEN-EPGSSIMPGKVNP 319
Score = 30.4 bits (69), Expect = 2.3
Identities = 14/27 (51%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 250 FNFLTLPESFLTGSSIMPQKKNPDVLE 276
L LPE+ GSSIMP K NP E
Sbjct: 298 LGELNLPEN-EPGSSIMPGKVNPTQCE 323
>gnl|CDD|181000 PRK07492, PRK07492, adenylosuccinate lyase; Provisional.
Length = 435
Score = 38.0 bits (89), Expect = 0.008
Identities = 47/161 (29%), Positives = 64/161 (39%), Gaps = 40/161 (24%)
Query: 35 HAKTIMPGFTHFQIAQPISLGHYL-LAYASMFQRDINRLIDCRKRVNISPLGSAALAGTT 93
H T G +H A+P + G L YA F R+ RL+ R+ + + A GT
Sbjct: 134 HKDTPTIGRSHGIHAEPTTFGLKLARFYAE-FARNRERLVAAREEIATCAISGAV--GTF 190
Query: 94 HHIN----RYLTAKL-LDFEKPSENSLDSISDRDFVIEFISTCCLI----------VMHL 138
+I+ ++ KL L KP S I RD F +T +I + HL
Sbjct: 191 ANIDPRVEEHVAKKLGL---KPEPVSTQVIP-RDRHAMFFATLGVIASSIERLAIEIRHL 246
Query: 139 SRI----SEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNP 175
R +EEF F Q GSS MP K+NP
Sbjct: 247 QRTEVLEAEEF--FSPGQ-----------KGSSAMPHKRNP 274
>gnl|CDD|198066 smart00998, ADSL_C, Adenylosuccinate lyase C-terminus.
Adenylosuccinate lyase catalyses two steps in the
synthesis of purine nucleotides: the conversion of
succinylaminoimidazole-carboxamide ribotide into
aminoimidazole-carboxamide ribotide (the fifth step of
de novo IMP biosynthesis); the formation of adenosine
monophosphate (AMP) from adenylosuccinate (the final
step in the synthesis of AMP from IMP). This entry
represents the C-terminal, seven alpha-helical, domain
of adenylosuccinate lyase.
Length = 81
Score = 32.8 bits (76), Expect = 0.053
Identities = 15/73 (20%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 360 LVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKF 419
LV+KG+ ++E+V E+ K ++L L +Y+S++ ++ L
Sbjct: 13 LVEKGLGREEAYELVQRAAMKAWEEGKDLREL-LLADPEVTAYLSEEELEELF-----DP 66
Query: 420 KNHIGGTSPEQVK 432
+ ++ G + V
Sbjct: 67 EYYL-GHADAIVD 78
>gnl|CDD|236452 PRK09285, PRK09285, adenylosuccinate lyase; Provisional.
Length = 456
Score = 34.0 bits (79), Expect = 0.14
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 15 DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLID 74
++++ L +I L +L+ ++A M TH Q A P +LG + A +R + +L
Sbjct: 141 EVLLPALRELIDALKELAHEYADVPMLSRTHGQPATPTTLGKEMANVAYRLERQLKQLEA 200
Query: 75 C 75
Sbjct: 201 V 201
>gnl|CDD|181437 PRK08470, PRK08470, adenylosuccinate lyase; Provisional.
Length = 442
Score = 33.2 bits (76), Expect = 0.26
Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 32/190 (16%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
I T + L R + +IIE + +++ + + +H T+M G +H +PI+ G L +
Sbjct: 98 IDTAVALQMRDSLKLIIEDVKNLMEAIKKRALEHKDTLMVGRSHGIHGEPITFGLVLAIW 157
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY--LTAKLLDFEKPSENSLDSIS 119
+R + L + +++ + S A+ H L + L KP+ S + +
Sbjct: 158 YDEIKRHLKALEHTMEVISVGKI-SGAMGNFAHAPLELEELVCEELGL-KPAPVS-NQVI 214
Query: 120 DRDFVIEFISTCCLI----------VMHLSRI----SEEFIIFMNPQFNFLTLPESFLTG 165
RD S L+ + HL R +EE+ F Q G
Sbjct: 215 QRDRYARLASALALLASSCEKIAVAIRHLQRTEVYEAEEY--FSKGQ-----------KG 261
Query: 166 SSIMPQKKNP 175
SS MP K+NP
Sbjct: 262 SSAMPHKRNP 271
>gnl|CDD|171490 PRK12425, PRK12425, fumarate hydratase; Provisional.
Length = 464
Score = 31.8 bits (72), Expect = 0.76
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 28 LTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
L + S +HAK + G TH A PI+ G L A+
Sbjct: 169 LAEQSARHAKLVKTGRTHMMDATPITFGQELSAF 202
>gnl|CDD|152473 pfam12038, DUF3524, Domain of unknown function (DUF3524). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is about 170 amino acids in length. This domain is found
associated with pfam00534. This domain has two conserved
sequence motifs: HENQ and FNS. This domain has a single
completely conserved residue S that may be functionally
important.
Length = 168
Score = 30.2 bits (69), Expect = 1.2
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 8/42 (19%)
Query: 244 IFMNPQFNFLTLPESFLTGSS----IMPQKKNPDVLELIRGK 281
+ N FN +SFL G MP ++E I K
Sbjct: 123 VVFNSAFNR----DSFLDGLRTFLRRMPDAVPKGLVERIAEK 160
>gnl|CDD|216742 pfam01855, POR_N, Pyruvate flavodoxin/ferredoxin oxidoreductase,
thiamine diP-bdg. This family includes the N terminal
structural domain of the pyruvate ferredoxin
oxidoreductase. This domain binds thiamine diphosphate,
and along with domains II and IV, is involved in inter
subunit contacts. The family also includes pyruvate
flavodoxin oxidoreductase as encoded by the nifJ gene in
cyanobacterium which is required for growth on molecular
nitrogen when iron is limited.
Length = 230
Score = 30.3 bits (69), Expect = 1.4
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 15/77 (19%)
Query: 338 NEQEMYETAIKGFSISTDVADYLVKKGVP-------FRTSHEIVGSIIKYCNEKHKTFKD 390
N QE ++ A+ F+++ V P FRTSHE + +E K D
Sbjct: 126 NVQEAFDLALVAFNLAEKV-------RTPVIHLFDGFRTSHEY-EKVELPPDEDLKDLVD 177
Query: 391 LSLAELKTFHSYISDDI 407
L K + ++
Sbjct: 178 EFLPPYKRARYALDPEM 194
>gnl|CDD|173547 PTZ00354, PTZ00354, alcohol dehydrogenase; Provisional.
Length = 334
Score = 30.4 bits (69), Expect = 1.7
Identities = 13/61 (21%), Positives = 30/61 (49%), Gaps = 15/61 (24%)
Query: 259 FLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL----QEDKLPL 314
F+ G+ + + ++L L+R + A++I +T++ ++ Y DL + + LP
Sbjct: 241 FMGGAKV----EKFNLLPLLRKR-----ASIIF--STLRSRSDEYKADLVASFEREVLPY 289
Query: 315 F 315
Sbjct: 290 M 290
>gnl|CDD|237599 PRK14058, PRK14058, acetylglutamate/acetylaminoadipate kinase;
Provisional.
Length = 268
Score = 29.1 bits (66), Expect = 4.0
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 307 LQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGF 350
L+ + L L V ++ G LIE+ T E E A G
Sbjct: 181 LKAEALVLLSDVPGLLRDPPDEGSLIERITPEEAEELSKAAGGG 224
>gnl|CDD|234384 TIGR03896, cyc_nuc_ocin, bacteriocin-type transport-associated
protein. Members of this protein family are
uncharacterized and contain two copies of the cyclic
nucleotide-binding domain pfam00027. Members are
restricted to select cyanobacteria but are found
regularly in association with a transport operon that,
in turn, is associated with the production of putative
bacteriocins. The models describing the transport operon
are TIGR03794, TIGR03796, and TIGR03797.
Length = 317
Score = 28.3 bits (63), Expect = 8.1
Identities = 19/61 (31%), Positives = 26/61 (42%), Gaps = 8/61 (13%)
Query: 59 LAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSI 118
+ +AS F R I L+ R R +S G A YL L E+ N+LD +
Sbjct: 252 VGFASRFYRVIASLLSQRSRDQVSSRGYARRV--------YLREGLEYDEELDLNTLDRM 303
Query: 119 S 119
S
Sbjct: 304 S 304
>gnl|CDD|183550 PRK12480, PRK12480, D-lactate dehydrogenase; Provisional.
Length = 330
Score = 28.3 bits (63), Expect = 9.2
Identities = 16/78 (20%), Positives = 34/78 (43%)
Query: 77 KRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVM 136
K + ++ +G+ + T I A + ++ LD ++ +D V E I +I +
Sbjct: 145 KNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYPNKDLDFLTYKDSVKEAIKDADIISL 204
Query: 137 HLSRISEEFIIFMNPQFN 154
H+ E + +F F+
Sbjct: 205 HVPANKESYHLFDKAMFD 222
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.324 0.139 0.399
Gapped
Lambda K H
0.267 0.0865 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,525,310
Number of extensions: 2345870
Number of successful extensions: 2681
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2637
Number of HSP's successfully gapped: 111
Length of query: 455
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 355
Effective length of database: 6,502,202
Effective search space: 2308281710
Effective search space used: 2308281710
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (27.0 bits)