RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3416
(455 letters)
>1tj7_A Argininosuccinate lyase; crystallin, E. coli, fumarase, ASPA lyase;
2.44A {Escherichia coli} SCOP: a.127.1.1
Length = 457
Score = 401 bits (1032), Expect = e-137
Identities = 108/263 (41%), Positives = 157/263 (59%), Gaps = 8/263 (3%)
Query: 178 KDLRQR--------AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229
+D +R ALAGT + I+R A L F + NSLDS+SDRD V+E +S
Sbjct: 184 QDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAA 243
Query: 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANL 289
+ ++HLSR +E+ I F + F+ L + +GSS+MPQKKNPD LELIRGK GR+ L
Sbjct: 244 IGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGAL 303
Query: 290 INILTTMKCQTLAYNKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKG 349
++ T+K LAYNKD+QEDK LFD +D + CL + +++ E A +G
Sbjct: 304 TGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQG 363
Query: 350 FSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIID 409
++ +T++ADYLV KGVPFR +H IVG + + K +DL L+EL+ F I +D+
Sbjct: 364 YANATELADYLVAKGVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYP 423
Query: 410 ILCIENSIKFKNHIGGTSPEQVK 432
IL +++ + + GG SP+QV
Sbjct: 424 ILSLQSCLDKRAAKGGVSPQQVA 446
Score = 310 bits (796), Expect = e-101
Identities = 73/179 (40%), Positives = 110/179 (61%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+ TDL+L+ + + ++ + L + + + +MPG+TH Q AQP++ H+ LAY
Sbjct: 113 VATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLAY 172
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
M RD +RL D KR+++SPLG ALAGT + I+R A L F + NSLDS+SDR
Sbjct: 173 VEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSDR 232
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL 180
D V+E +S + ++HLSR +E+ I F + F+ L + +GSS+MPQKKNPD +L
Sbjct: 233 DHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALEL 291
>2e9f_A Argininosuccinate lyase; alpha helix bundle; HET: ARG; 2.80A
{Thermus thermophilus}
Length = 462
Score = 401 bits (1032), Expect = e-137
Identities = 107/263 (40%), Positives = 167/263 (63%), Gaps = 8/263 (3%)
Query: 178 KDLRQR--------AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229
+D ++R AALAGT I+R+ TA+ L F+ P NSLD+++ RDF +E +S
Sbjct: 187 EDAKERLNESPLGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVASRDFALEVLSALN 246
Query: 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANL 289
+ ++HLSR++EE I++ +F F+ +P++F TGSSIMPQKKNPD+LELIR K GR+
Sbjct: 247 IGMLHLSRMAEELILYSTEEFGFVEVPDAFATGSSIMPQKKNPDILELIRAKAGRVLGAF 306
Query: 290 INILTTMKCQTLAYNKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKG 349
+ + +K LAYNKDLQEDK PL D + L L+ + + M+ A G
Sbjct: 307 VGLSAVVKGLPLAYNKDLQEDKEPLLDALATYRDSLRLLAALLPGLKWRRERMWRAAEGG 366
Query: 350 FSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIID 409
++++T++ADYL +KG+PFR +H +VG +++ E+ + KDL+L EL+ H ++D +
Sbjct: 367 YTLATELADYLAEKGLPFREAHHVVGRLVRRLVEEGRALKDLTLEELQAHHPLFAEDALP 426
Query: 410 ILCIENSIKFKNHIGGTSPEQVK 432
+L +E +I + GGT+PE V+
Sbjct: 427 LLRLETAIHRRRSYGGTAPEAVR 449
Score = 306 bits (785), Expect = e-100
Identities = 87/181 (48%), Positives = 127/181 (70%), Gaps = 2/181 (1%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKT--IMPGFTHFQIAQPISLGHYLL 59
+ TDLRLY R ID ++ LLL + + L ++KH ++PG+TH Q AQP+ L H+ L
Sbjct: 114 VATDLRLYLRGAIDELLALLLALRRVLVREAEKHLDPLYVLPGYTHLQRAQPVLLAHWFL 173
Query: 60 AYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSIS 119
AY M +RD RL D ++R+N SPLG+AALAGT I+R+ TA+ L F+ P NSLD+++
Sbjct: 174 AYYEMLKRDAGRLEDAKERLNESPLGAAALAGTGFPIDRHFTARELGFKAPMRNSLDAVA 233
Query: 120 DRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKD 179
RDF +E +S + ++HLSR++EE I++ +F F+ +P++F TGSSIMPQKKNPD+ +
Sbjct: 234 SRDFALEVLSALNIGMLHLSRMAEELILYSTEEFGFVEVPDAFATGSSIMPQKKNPDILE 293
Query: 180 L 180
L
Sbjct: 294 L 294
>1k7w_A Delta 2 crystallin; eye lens protein, argininosuccinate lyase,
enzyme mechanism; HET: AS1; 1.96A {Anas platyrhynchos}
SCOP: a.127.1.1 PDB: 1hy1_A 1tju_A 1auw_A 1tjv_A 1tjw_A*
1u16_A* 1u15_A* 1dcn_A* 1xwo_A 1hy0_A 1i0a_A 1aos_A
1k62_A
Length = 468
Score = 388 bits (999), Expect = e-132
Identities = 105/275 (38%), Positives = 159/275 (57%), Gaps = 9/275 (3%)
Query: 178 KDLRQR--------AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCC 229
++++R ALAG I+R + L+F S NS+D+IS+RDFV+EF+S
Sbjct: 190 GEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFAT 249
Query: 230 LIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANL 289
L+++HLS+++E+ II+ +F FLTL ++F TG+S+MPQKKNPD LELIR K GR++ L
Sbjct: 250 LLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGASLMPQKKNPDSLELIRSKAGRVFGRL 309
Query: 290 INILTTMKCQTLAYNKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKG 349
+IL +K YNKDLQEDK +FD VD + L + +I +++ M +
Sbjct: 310 ASILMVLKGLPSTYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKALTPE 369
Query: 350 FSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIID 409
+TD+A YLV+KGVPFR +H G + K T LSL +LK+ S D+
Sbjct: 370 ML-ATDLALYLVRKGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQ 428
Query: 410 ILCIENSIKFKNHIGGTSPEQVKITVQGFRFYIQK 444
+ NS++ +GGT+ V ++ R ++K
Sbjct: 429 VFNFVNSVEQYTALGGTAKSSVTTQIEQLRELMKK 463
Score = 307 bits (789), Expect = e-100
Identities = 82/179 (45%), Positives = 121/179 (67%)
Query: 2 IVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+VTDL+L+ + + II LL +IK L + + I+PG+TH Q AQPI +LL++
Sbjct: 119 VVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYTHLQKAQPIRWSQFLLSH 178
Query: 62 ASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDR 121
A RD RL + +KR+N+ PLGS ALAG I+R + L+F S NS+D+IS+R
Sbjct: 179 AVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISER 238
Query: 122 DFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL 180
DFV+EF+S L+++HLS+++E+ II+ +F FLTL ++F TG+S+MPQKKNPD +L
Sbjct: 239 DFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGASLMPQKKNPDSLEL 297
>2fel_A 3-carboxy-CIS,CIS-muconate lactonizing enzyme; biodegradation,
sulphonic acids, 3-sulphomuconate; 2.20A {Agrobacterium
tumefaciens} PDB: 2fen_A
Length = 359
Score = 99.3 bits (248), Expect = 4e-23
Identities = 41/188 (21%), Positives = 67/188 (35%), Gaps = 35/188 (18%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
T L L + +II L +I L DL+ + + G+T Q A I++ + +
Sbjct: 114 TSLMLRLKMAAEIIATRLGHLIDTLGDLASRDGHKPLTGYTRMQAAIGITVADRAAGWIA 173
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY------LTAKLLDFEKPSENSLDS 117
+R + RL + G A AGT + AK L +
Sbjct: 174 PLERHLLRLETFAQNGFALQFGGA--AGTLEKLGDNAGAVRADLAKRLGLADRPQ----W 227
Query: 118 ISDRDFVIEFISTCCLI----------VMHLSRISEEFIIFMNPQFNFLTLPESFLTGSS 167
+ RD + EF + L+ + ++ I E ++ GSS
Sbjct: 228 HNQRDGIAEFANLLSLVTGTLGKFGQDIALMAEIGSEI--RLSGG-----------GGSS 274
Query: 168 IMPQKKNP 175
MP K+NP
Sbjct: 275 AMPHKQNP 282
Score = 47.6 bits (114), Expect = 4e-06
Identities = 16/93 (17%), Positives = 31/93 (33%), Gaps = 23/93 (24%)
Query: 214 SISDRDFVIEFISTCCLI----------VMHLSRISEEFIIFMNPQFNFLTLPESFLTGS 263
+ RD + EF + L+ + ++ I E ++ GS
Sbjct: 227 WHNQRDGIAEFANLLSLVTGTLGKFGQDIALMAEIGSEI--RLSGG-----------GGS 273
Query: 264 SIMPQKKNPDVLELIRGKTGRIYANLINILTTM 296
S MP K+NP E + + + ++
Sbjct: 274 SAMPHKQNPVNAETLVTLARFNAVQISALHQSL 306
>1q5n_A 3-carboxy-CIS,CIS-muconate cycloisomerase; CMLE, aromatic
degradation; 2.30A {Acinetobacter calcoaceticus} SCOP:
a.127.1.1
Length = 454
Score = 100 bits (250), Expect = 5e-23
Identities = 46/181 (25%), Positives = 80/181 (44%), Gaps = 16/181 (8%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
T L R + I+ + + + + +M G T Q A PI+LGH L +AS
Sbjct: 116 TACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLARWAS 175
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGTTHHIN------RYLTAKLLDFEKPSENSLDS 117
F+RD++R+ + RV ++ LG A G+ + AK L + +
Sbjct: 176 AFKRDLDRINAIKARVLVAQLGGA--VGSLASLQDQGSIVVEAYAKQLKLGQT---ACTW 230
Query: 118 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLT---GSSIMPQKKN 174
+RD ++E S +I ++ +++ ++ + M Q + E GSS MP K+N
Sbjct: 231 HGERDRIVEIASVLGIITGNVGKMARDWSLMM--QTEIAEVFEPTAKGRGGSSTMPHKRN 288
Query: 175 P 175
P
Sbjct: 289 P 289
Score = 53.8 bits (130), Expect = 5e-08
Identities = 43/240 (17%), Positives = 91/240 (37%), Gaps = 25/240 (10%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
A+L + AK L + + +RD ++E S +I ++ +++ ++
Sbjct: 204 ASLQDQGSIVVEAY-AKQLKLGQTA---CTWHGERDRIVEIASVLGIITGNVGKMARDWS 259
Query: 244 IFMNPQFNFLTLPESFLT---GSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQT 300
+ M Q + E GSS MP K+NP + R+ A + +I +M
Sbjct: 260 LMM--QTEIAEVFEPTAKGRGGSSTMPHKRNPVAAASVLAAANRVPALMSSIYQSM---V 314
Query: 301 LAYNKDLQE-----DKLP-LFDTVDNIIMCLVASGKLIEKATFNEQEMYET--AIKGFSI 352
+ + L LP +F L + +++ N + M++ G +
Sbjct: 315 QEHERSLGAWHAEWLSLPEIFQLTAGA---LERTLDVLKGMEVNAENMHQNIECTHGLIM 371
Query: 353 STDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILC 412
+ V L + +H +V + K + K KD+ ++++ Y + +D +
Sbjct: 372 AEAVMMALAPH-MGRLNAHHVVEAACKTAVAEQKHLKDI-ISQVDEVKQYFNPSQLDEIF 429
>3c8t_A Fumarate lyase; structural genomics, PSI-2, protein structure
initiat YORK SGX research center for structural
genomics, nysgxrc; 2.20A {Mesorhizobium SP}
Length = 451
Score = 100 bits (250), Expect = 6e-23
Identities = 50/181 (27%), Positives = 77/181 (42%), Gaps = 16/181 (8%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
T L R + +I + ++ K L L+ H T M G TH Q A P++ G+ + S
Sbjct: 110 TATVLQIRDGLALISRRIESVRKALAALARNHRDTPMAGRTHLQHALPVTFGYKAAVWLS 169
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGTTHHIN------RYLTAKLLDFEKPSENSLDS 117
F R RL + RV + A +GT + + A+ L+ P S+
Sbjct: 170 AFDRHAARLEEISPRVLVVEFSGA--SGTLASLGTRGLDVQRELARELNLGVP---SITW 224
Query: 118 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLT---GSSIMPQKKN 174
S RD V E + L+ L +++ + I M + E F+ SS MPQK+N
Sbjct: 225 HSARDAVAETVQFLALVSGSLGKLAMDISIMM--TTELGEVAEPFVRHRGASSTMPQKQN 282
Query: 175 P 175
P
Sbjct: 283 P 283
Score = 52.7 bits (127), Expect = 1e-07
Identities = 48/240 (20%), Positives = 86/240 (35%), Gaps = 25/240 (10%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
A+L + R L A+ L+ PS + S RD V E + L+ L +++ +
Sbjct: 198 ASLGTRGLDVQREL-ARELNLGVPS---ITWHSARDAVAETVQFLALVSGSLGKLAMDIS 253
Query: 244 IFMNPQFNFLTLPESFLT---GSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQT 300
I M + E F+ SS MPQK+NP ELI + + ++L M
Sbjct: 254 IMM--TTELGEVAEPFVRHRGASSTMPQKQNPVSCELILAGARIVRNHATSMLDAM---I 308
Query: 301 LAYNKDLQ----EDK-LP-LFDTVDNIIMCLVASGKLIEKATFNEQEMYET--AIKGFSI 352
+ + E +P F I L + ++ M E +G +
Sbjct: 309 HDFERATGPWHLEWSAVPEGFAVASGI---LYQAEFMLGGLQVFPDRMRENLDHSRGLIV 365
Query: 353 STDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILC 412
+ V L + +H+IV + E ++ L + + ++ + L
Sbjct: 366 AEAVMMALAPH-TGRKEAHDIVYLGCRRAVEDKTGLFEV-LRTMPEVAKPLGEEALRDLT 423
>1re5_A 3-carboxy-CIS,CIS-muconate cycloisomerase; homotetramer, fumarase
class II cycloisomerase, molecular EV isomerase; HET:
CIT; 2.60A {Pseudomonas putida} SCOP: a.127.1.1
Length = 450
Score = 97.7 bits (244), Expect = 3e-22
Identities = 49/181 (27%), Positives = 73/181 (40%), Gaps = 16/181 (8%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
T L L R +D+I L + L+ + KHA T + G T Q A P++LG L
Sbjct: 112 TGLVLQLRDALDLIEADLGKLADTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLG 171
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGTTHHIN------RYLTAKLLDFEKPSENSLDS 117
R RL + R R+ + G A +G+ + A+ L P
Sbjct: 172 ALTRHRQRLQELRPRLLVLQFGGA--SGSLAALGSKAMPVAEALAEQLKLTLP---EQPW 226
Query: 118 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLT---GSSIMPQKKN 174
+ RD ++EF S L+ L + + + M Q + E GSS MP K+N
Sbjct: 227 HTQRDRLVEFASVLGLVAGSLGKFGRDISLLM--QTEAGEVFEPSAPGKGGSSTMPHKRN 284
Query: 175 P 175
P
Sbjct: 285 P 285
Score = 51.1 bits (123), Expect = 4e-07
Identities = 44/240 (18%), Positives = 86/240 (35%), Gaps = 25/240 (10%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
AAL + L A+ L P + RD ++EF S L+ L + +
Sbjct: 200 AALGSKAMPVAEAL-AEQLKLTLPE---QPWHTQRDRLVEFASVLGLVAGSLGKFGRDIS 255
Query: 244 IFMNPQFNFLTLPESFLT---GSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQT 300
+ M Q + E GSS MP K+NP ++ G R+ L + M
Sbjct: 256 LLM--QTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAAM---P 310
Query: 301 LAYNKDLQE-----DKLP-LFDTVDNIIMCLVASGKLIEKATFNEQEMYE--TAIKGFSI 352
+ + L + LP + V L + + E + M +G +
Sbjct: 311 QEHERSLGLWHAEWETLPDICCLVSGA---LRQAQVIAEGMEVDAARMRRNLDLTQGLVL 367
Query: 353 STDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILC 412
+ V+ L ++ + +H ++ + + + + + L + + +S + +D L
Sbjct: 368 AEAVSIVLAQR-LGRDRAHHLLEQCCQRAVAEQRHLRAV-LGDEPQVSAELSGEELDRLL 425
>1c3c_A Protein (adenylosuccinate lyase); purine biosynthesis; 1.80A
{Thermotoga maritima} SCOP: a.127.1.1 PDB: 1c3u_A
Length = 429
Score = 93.1 bits (232), Expect = 8e-21
Identities = 43/168 (25%), Positives = 71/168 (42%), Gaps = 12/168 (7%)
Query: 14 IDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLI 73
I++E L L ++++++ T G TH A+P S G +L + S +R++ RL
Sbjct: 109 GKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLGWYSEMKRNVQRLE 168
Query: 74 DCRKRVNISPLGSAALAGTTHHIN---RYLTAKLLDFEKPSENSLDSISDRDFVIEFIST 130
+ V+ + A G ++ L KP S + RD ++ST
Sbjct: 169 RAIEEVSYGKISGA--VGNYANVPPEVEEKALSYLGL-KPEPVSTQVVP-RDRHAFYLST 224
Query: 131 CCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL---TGSSIMPQKKNP 175
++ + RI+ E + L + E F GSS MP KKNP
Sbjct: 225 LAIVAAGIERIAVEIRHLQRTE--VLEVEEPFRKGQRGSSAMPHKKNP 270
Score = 59.2 bits (144), Expect = 1e-09
Identities = 45/218 (20%), Positives = 85/218 (38%), Gaps = 25/218 (11%)
Query: 218 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL---TGSSIMPQKKNPDV 274
RD ++ST ++ + RI+ E + L + E F GSS MP KKNP
Sbjct: 215 RDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEV--LEVEEPFRKGQRGSSAMPHKKNPIT 272
Query: 275 LELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDK-----LP-LFDTVDNIIMCLVAS 328
E + G + + A + L + L + +D+ P T+ + +V +
Sbjct: 273 CERLTGLSRMMRAYVDPSLENI---ALWHERDISHSSVERYVFPDATQTLYYM---IVTA 326
Query: 329 GKLIEKATFNEQEMYET--AIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHK 386
++ NE+ M + KG S V L++KG+ + +++IV K
Sbjct: 327 TNVVRNMKVNEERMKKNIDLTKGLVFSQRVLLKLIEKGLTRKEAYDIVQRNALKTWNSEK 386
Query: 387 TFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIG 424
F + L E + ++ + ++ L ++
Sbjct: 387 HFLEY-LLEDEEVKKLVTKEELEELF-----DISYYLK 418
>2pfm_A Adenylosuccinate lyase; PURB, purine biosynthesis, B anthracis;
2.00A {Bacillus anthracis} PDB: 1f1o_A 2x75_A*
Length = 444
Score = 92.4 bits (230), Expect = 2e-20
Identities = 42/171 (24%), Positives = 75/171 (43%), Gaps = 12/171 (7%)
Query: 11 RKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDIN 70
++ +II++ L + L + + +H TIM G TH A+P + G L + +R++
Sbjct: 118 KQANEIILKDLENFVSILANKAKEHKYTIMMGRTHGVHAEPTTFGLKLGLWYEEMKRNVE 177
Query: 71 RLIDCRKRVNISPLGSAALAGTTHHIN---RYLTAKLLDFEKPSENSLDSISDRDFVIEF 127
R V + L A GT +I+ + L + + S ++ RD +
Sbjct: 178 RFKQAANTVRVGKLSGA--VGTYANIDPFVEKYVCENLGL-EAAPISTQTLQ-RDRHAHY 233
Query: 128 ISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL---TGSSIMPQKKNP 175
+ST LI + +++ E + + E+F GSS MP K+NP
Sbjct: 234 MSTLALIATSIEKMAVEIRGLQKSE--TREVEEAFAKGQKGSSAMPHKRNP 282
Score = 58.1 bits (141), Expect = 2e-09
Identities = 43/218 (19%), Positives = 83/218 (38%), Gaps = 25/218 (11%)
Query: 218 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL---TGSSIMPQKKNPDV 274
RD ++ST LI + +++ E + + E+F GSS MP K+NP
Sbjct: 227 RDRHAHYMSTLALIATSIEKMAVEIRGLQKSET--REVEEAFAKGQKGSSAMPHKRNPIG 284
Query: 275 LELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDK-----LP-LFDTVDNIIMCLVAS 328
E + G I ++ + L + +D+ LP ++ + L
Sbjct: 285 SENMTGLARVIRGYMMTAYENV---PLWHERDISHSSAERVILPDATIALNYM---LNRF 338
Query: 329 GKLIEKATFNEQEMYET--AIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHK 386
G +++ T + M G S V L+ KG+ +++IV E
Sbjct: 339 GNIVKNLTVYPENMKRNMTRTYGLIYSQRVMLTLIDKGMVREEAYDIVQPKAMEAWETQV 398
Query: 387 TFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIG 424
FK+L + + S ++ + I+ +++H+
Sbjct: 399 QFKEL-VEADERITSKLTQEEINECF-----NYEHHMQ 430
>4eei_A Adenylosuccinate lyase; structural genomics, niaid, national
institute of allergy AN infectious diseases; HET: AMP;
1.92A {Francisella tularensis subsp}
Length = 438
Score = 89.7 bits (223), Expect = 1e-19
Identities = 42/168 (25%), Positives = 64/168 (38%), Gaps = 12/168 (7%)
Query: 14 IDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLI 73
+ +I+ L + L +++ + I G +H A+P+S G L F+R + L
Sbjct: 110 MSYVIKDLEALCDSLLTKAEETKEIITMGRSHGMFAEPMSFGQKFLGAYVEFKRRLKDLK 169
Query: 74 DCRKRVNISPLGSAALAGTTHHIN---RYLTAKLLDFEKPSENSLDSISDRDFVIEFIST 130
D +K A G + A +L E S I RD + + IS
Sbjct: 170 DFQKDGLTVQFSGA--VGNYCILTTEDEKKAADILGL-PVEEVSTQVIP-RDRIAKLISI 225
Query: 131 CCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL---TGSSIMPQKKNP 175
LI + R++ E + E F GSS MP KKNP
Sbjct: 226 HGLIASAIERLAVEIRHLHRSD--VFEVYEGFSKGQKGSSTMPHKKNP 271
Score = 53.5 bits (129), Expect = 7e-08
Identities = 37/221 (16%), Positives = 69/221 (31%), Gaps = 24/221 (10%)
Query: 215 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL---TGSSIMPQKKN 271
+ RD + + IS LI + R++ E + E F GSS MP KKN
Sbjct: 213 VIPRDRIAKLISIHGLIASAIERLAVEIRHLHRSDV--FEVYEGFSKGQKGSSTMPHKKN 270
Query: 272 PDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDK-----LP-LFDTVDNIIMCL 325
P E + G + +++ L L + +D+ LP F + L
Sbjct: 271 PISTENLTGMARMLRSHVSIALENC---VLWHERDISHSSAERFYLPDNFGIMVYA---L 324
Query: 326 VASGKLIEKATFNEQEMYET--AIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNE 383
I+ + + + + S + + ++IV + +
Sbjct: 325 RRMKNTIDNLVVQRDIIEDRVRSTSAYLSSFYLHFLVANTPFMREDCYKIVQQVAFDLKQ 384
Query: 384 KHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIG 424
K L + + +D I K ++
Sbjct: 385 GESFSKKLQKVMHDEHNIILDIPEMDFEGI-----KKTYLK 420
>1dof_A Adenylosuccinate lyase; purine biosynthesis; 2.10A {Pyrobaculum
aerophilum} SCOP: a.127.1.1
Length = 403
Score = 88.9 bits (221), Expect = 2e-19
Identities = 37/166 (22%), Positives = 60/166 (36%), Gaps = 10/166 (6%)
Query: 14 IDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLI 73
+ + E + L ++ K+ M G TH Q A+PI+LG Y +L
Sbjct: 112 LAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFANYYYELYIACRQLA 171
Query: 74 DCRK--RVNIS-PLGS-AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFIS 129
+ R I +G+ A+ + R + A+ L + R+ S
Sbjct: 172 LAEEFIRAKIGGAVGTMASWGELGLEVRRRV-AERLGL-PHHVITTQVAP-RESFAVLAS 228
Query: 130 TCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNP 175
L+ R++ E P+ + E GSS MP K NP
Sbjct: 229 ALALMAAVFERLAVEIRELSRPE--IGEVVEGG-GGSSAMPHKANP 271
Score = 49.2 bits (118), Expect = 1e-06
Identities = 31/186 (16%), Positives = 66/186 (35%), Gaps = 17/186 (9%)
Query: 218 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLEL 277
R+ S L+ R++ E P+ + E GSS MP K NP E
Sbjct: 220 RESFAVLASALALMAAVFERLAVEIRELSRPEI--GEVVEGG-GGSSAMPHKANPTASER 276
Query: 278 IRGKTGRIYANLINILTTMKCQTLAYNKDLQEDK-----LP-LFDTVDNIIMCLVASGKL 331
I + A + L + +DL +P +D I L ++ ++
Sbjct: 277 IVSLARYVRALTHVAFENV---ALWHERDLTNSANERVWIPEALLALDEI---LTSALRV 330
Query: 332 IEKATFNEQEMYE--TAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFK 389
++ +E+ + E + ++ + ++K+G +++ + E K
Sbjct: 331 LKNVYIDEERITENLQKALPYILTEFHMNRMIKEGASRAEAYKKAKEVKALTFEYQKWPV 390
Query: 390 DLSLAE 395
+ + +
Sbjct: 391 ERLIED 396
>2j91_A Adenylosuccinate lyase; disease mutation, adenylosuccinase, succino
AMP-lyase, purin biosynthesis, adenylosuccinase DEFI
AMP, ADSL, saicar, purine; HET: AMP; 1.8A {Homo sapiens}
PDB: 2vd6_A*
Length = 503
Score = 78.1 bits (193), Expect = 1e-15
Identities = 44/198 (22%), Positives = 70/198 (35%), Gaps = 39/198 (19%)
Query: 3 VTD--LRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
V D + R +D+++ L +I L D + + A GFTHFQ AQ ++G
Sbjct: 137 VGDNTDLIILRNALDLLLPKLARVISRLADFAKERASLPTLGFTHFQPAQLTTVGKRCCL 196
Query: 61 YASMFQRDINRLIDCRKRVN---IS-PLGSAA----LAGTTHHINRYL---TAKLLDFEK 109
+ D+ L R + + G+ A L H L + F++
Sbjct: 197 WIQDLCMDLQNLKRVRDDLRFRGVKGTTGTQASFLQLFEGDDHKVEQLDKMVTEKAGFKR 256
Query: 110 PSENSLDSISDRDFVIEFISTCCLIVMHLSRIS------------EEFIIFMNPQFNFLT 157
+ + + R IE +S + + +I EE F Q
Sbjct: 257 AFIITGQTYT-RKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEP--FEKQQ----- 308
Query: 158 LPESFLTGSSIMPQKKNP 175
GSS MP K+NP
Sbjct: 309 ------IGSSAMPYKRNP 320
Score = 28.8 bits (65), Expect = 4.2
Identities = 45/268 (16%), Positives = 88/268 (32%), Gaps = 66/268 (24%)
Query: 197 LTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRIS------------EEFII 244
+ + F++ + + + R IE +S + + +I EE
Sbjct: 247 MVTEKAGFKRAFIITGQTYT-RKVDIEVLSVLASLGASVHKICTDIRLLANLKEMEEP-- 303
Query: 245 FMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQ----- 299
F Q GSS MP K+NP E + +++ L T Q
Sbjct: 304 FEKQQ-----------IGSSAMPYKRNPMRSERCCSLARHLMTLVMDPLQTASVQWFERT 352
Query: 300 --------------TLAYNKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYET 345
L + + +T+ NI LV K+IE+ + +
Sbjct: 353 LDDSANRRICLAEAFLTADT--------ILNTLQNISEGLVVYPKVIER------RIRQE 398
Query: 346 AIKGFSISTDVADYLVKKGVPFRTSHEIVGSI-IKYCNEKHKTFKDLSLAELKTFHSYIS 404
F + ++ +VK G + HE + + + + + D L E +Y S
Sbjct: 399 --LPFMATENIIMAMVKAGGSRQDCHEKIRVLSQQAASVVKQEGGDNDLIERIQVDAYFS 456
Query: 405 DDIIDILCIENSIKFKNHIGGTSPEQVK 432
+++ + + G + +QV+
Sbjct: 457 PIHSQ---LDHLLDPSSFT-GRASQQVQ 480
>1yis_A Adenylosuccinate lyase; structural genomics, PSI, P structure
initiative, southeast collaboratory for structura
genomics, secsg; 2.40A {Caenorhabditis elegans}
Length = 478
Score = 76.2 bits (188), Expect = 4e-15
Identities = 45/189 (23%), Positives = 74/189 (39%), Gaps = 21/189 (11%)
Query: 3 VTD--LRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
V D + R ID I++ T+I L S K+ + + G TH+Q A +++G +
Sbjct: 111 VQDNADLIAYRDSIDHILKRFATVIDRLAAFSLKNKEVVTVGRTHYQTASLVTVGKRGVL 170
Query: 61 YASMFQRDINRLIDCRKRVN---IS-PLGSAA-----LAGTTHHINRY--LTAKLLDFEK 109
+A L + R ++ I G+ AG + L K +F
Sbjct: 171 WAQELLMAFQSLSEFRDKMRFRGIKGATGTQDSFLTLFAGDESKVEALDELVTKKANFSN 230
Query: 110 PSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL---TGS 166
+ + S R + + + L+ ++ + I + Q F L E F GS
Sbjct: 231 RFLITGQTYS-RQQDSQLVFSLSLLGAAAKKVCTD-IRVL--Q-AFGELLEPFEKDQIGS 285
Query: 167 SIMPQKKNP 175
S MP KKNP
Sbjct: 286 SAMPYKKNP 294
Score = 38.4 bits (90), Expect = 0.004
Identities = 44/259 (16%), Positives = 78/259 (30%), Gaps = 52/259 (20%)
Query: 197 LTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLP 256
L K +F + + S R + + + L+ ++ + I + Q F L
Sbjct: 221 LVTKKANFSNRFLITGQTYS-RQQDSQLVFSLSLLGAAAKKVCTD-IRVL--Q-AFGELL 275
Query: 257 ESFL---TGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQ-------------- 299
E F GSS MP KKNP E + ++ LT + Q
Sbjct: 276 EPFEKDQIGSSAMPYKKNPMKSERCCALSRKLINAPQEALTILADQGLERTLDDSAGRRM 335
Query: 300 -----TLAYNKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSIST 354
L L T+ NI L ++K + + F
Sbjct: 336 LIPDVLLTAEA--------LLTTLQNIFEGLSVQTDNVKK------IVEDE--IAFLGLE 379
Query: 355 DVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKT--FHSYISDDIIDILC 412
L ++GV + +H ++ + T K + + F + D ++ ++
Sbjct: 380 KAMMMLTEEGVDRQQAHAVIRKTALEAKQLQATQKVD-IRQTMADPFFDSVRDRVVGLV- 437
Query: 413 IENSIKFKNHIGGTSPEQV 431
N G Q
Sbjct: 438 ----NNPINFT-GRCVSQT 451
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 73.5 bits (180), Expect = 7e-14
Identities = 91/508 (17%), Positives = 154/508 (30%), Gaps = 153/508 (30%)
Query: 18 IELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLIDCRK 77
EL+ + +++ L + Q+ + L + Y + DI+ L
Sbjct: 58 AELVGKFLGYVSSLVEPSKVG-----QFDQVLN-LCLTEFENCY--LEGNDIHALA---- 105
Query: 78 RVNISPLGSAALAGTTHHINRYLTAKLLD---FEKPSENSL-DSISD------------- 120
+ L T I Y+TA+++ F+K S ++L ++ +
Sbjct: 106 -AKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQG 164
Query: 121 ----------------RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNF---LTLPES 161
V + I + L R + + N L P +
Sbjct: 165 NTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN 224
Query: 162 -----FLTGSSI-MP-----Q-----------KKNPDVKDLRQRAALAGTTHHINRYLTA 199
+L I P Q P +LR L G T H +TA
Sbjct: 225 TPDKDYLLSIPISCPLIGVIQLAHYVVTAKLLGFTP--GELRSY--LKGATGHSQGLVTA 280
Query: 200 KLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESF 259
+ E S S + + F R E + P +LP S
Sbjct: 281 VAIA-ETDSWESFFVSVRKAITVLFFIGV--------RCYEAY-----PN---TSLPPSI 323
Query: 260 LTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTL--AYNKDLQEDK---LPL 314
L S+ + P + I LT + Q N L K + L
Sbjct: 324 LE-DSLENNEGVPSPMLSISN------------LTQEQVQDYVNKTNSHLPAGKQVEISL 370
Query: 315 FDTVDNIIMC-----LVASGKLIEKA---TFNEQ---EMYETAIKGFSISTDVADYL-VK 362
+ N+++ L + KA + +Q E +K FS +L V
Sbjct: 371 VNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLK-FSNR-----FLPV- 423
Query: 363 KGVPFRTSH--EIVGSIIKYCNEKHKTF--KDLSL--------AELKTFHSYISDDIIDI 410
PF + I K + + +F KD+ + ++L+ IS+ I+D
Sbjct: 424 -ASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERIVDC 482
Query: 411 LCI-----ENSIKFK-NHI-----GGTS 427
+ E + +FK HI GG S
Sbjct: 483 IIRLPVKWETTTQFKATHILDFGPGGAS 510
Score = 72.0 bits (176), Expect = 2e-13
Identities = 76/430 (17%), Positives = 136/430 (31%), Gaps = 159/430 (36%)
Query: 5 DLR-LYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTH-FQIAQ------------ 50
+LR LY H ++ +L+ + L++L FT I +
Sbjct: 172 ELRDLYQTYH-VLVGDLIKFSAETLSELIRTTLDAE-KVFTQGLNILEWLENPSNTPDKD 229
Query: 51 -----PIS--------LGHYLLAYASMFQRDINRLIDCRKRVNISPLGS--AALAGTTHH 95
PIS L HY+ + + + +P G + L G T H
Sbjct: 230 YLLSIPISCPLIGVIQLAHYV--------------VTAKL-LGFTP-GELRSYLKGATGH 273
Query: 96 INRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNF 155
+TA + E S S + + F R E + P
Sbjct: 274 SQGLVTAVAIA-ETDSWESFFVSVRKAITVLFFIGV--------RCYEAY-----PN--- 316
Query: 156 LTLPESFLTGSSIMPQKKNPD----VKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENS 211
+LP S L S+ + P + +L + + + N +L P+
Sbjct: 317 TSLPPSILE-DSLENNEGVPSPMLSISNLT-QEQVQDYVNKTNSHL---------PAGKQ 365
Query: 212 LDSIS----DRDFVIE-FISTCCLIVMHL-----------SRI--SEEFIIFMNPQFNFL 253
+ IS ++ V+ + + + L SRI SE + F N FL
Sbjct: 366 V-EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN---RFL 421
Query: 254 --TLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYN-KDLQED 310
P F S ++ +LI + +++N KD+
Sbjct: 422 PVASP--F--HSHLLV-----PASDLI--------------NKDLVKNNVSFNAKDI--- 455
Query: 311 KLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGV----- 365
++P++DT D G + + + SIS + D +++ V
Sbjct: 456 QIPVYDTFD---------GS-------DLRVLSG------SISERIVDCIIRLPVKWETT 493
Query: 366 -PFRTSHEIV 374
F+ +H I+
Sbjct: 494 TQFKATH-IL 502
Score = 55.1 bits (132), Expect = 4e-08
Identities = 80/481 (16%), Positives = 134/481 (27%), Gaps = 182/481 (37%)
Query: 115 LDSISDRDFVIEFIS-TCCLIV-----MHLSRISEEFI-IFMNPQFNF---------LTL 158
+D+ S R + S L+V S++ E+F I P F L
Sbjct: 1 MDAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAEL 60
Query: 159 PESFL--TGSSIMPQKKNPDVKDLR------QRAALAGTTHH------------------ 192
FL S + P K + L + L G H
Sbjct: 61 VGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTK 120
Query: 193 --INRYLTAKLLD---FEKPSENSL-DSISD----------------------------- 217
I Y+TA+++ F+K S ++L ++ +
Sbjct: 121 ELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEELRDLYQTY 180
Query: 218 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNF---LTLPES-----FLTGSSI-MP- 267
V + I + L R + + N L P + +L I P
Sbjct: 181 HVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPL 240
Query: 268 ----Q-----------KKNP-DVLELIRGKTGRI------------------YANLINIL 293
Q P ++ ++G TG + ++ +
Sbjct: 241 IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAI 300
Query: 294 TTM-----KCQTLAYNKDLQEDKLPLFDTVDNII-----MCLVASG-------KLIEKAT 336
T + +C N L L D+++N M L S + K
Sbjct: 301 TVLFFIGVRCYEAYPNTSLPPSILE--DSLENNEGVPSPM-LSISNLTQEQVQDYVNK-- 355
Query: 337 FNEQEMYETAIKGFSIS-TDVADYLVKKGVP---------FRTSHEIVG---SIIKYCNE 383
N + IS + A LV G P R + G S I +
Sbjct: 356 TNSHLPAGKQV---EISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER 412
Query: 384 K---HKTFKDLSLAELKT---FHS-YISD--DIIDILCIENSIKFKNHIGGTSPEQVKIT 434
K F L FHS + D+I+ ++N++ F + ++I
Sbjct: 413 KLKFSNRF-------LPVASPFHSHLLVPASDLINKDLVKNNVSFN-------AKDIQIP 458
Query: 435 V 435
V
Sbjct: 459 V 459
Score = 31.9 bits (72), Expect = 0.56
Identities = 16/68 (23%), Positives = 24/68 (35%), Gaps = 5/68 (7%)
Query: 334 KATFNEQEMYETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIK--YCNEKHKTFKDL 391
+ +N + + GFSI V + V + F G I+ Y +T D
Sbjct: 1643 QDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK---GKRIRENYSAMIFETIVDG 1699
Query: 392 SLAELKTF 399
L K F
Sbjct: 1700 KLKTEKIF 1707
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 70.7 bits (172), Expect = 4e-13
Identities = 63/375 (16%), Positives = 113/375 (30%), Gaps = 104/375 (27%)
Query: 20 LLLTMIKHLTD-LSDKHAKTI-----MPGFTHFQIAQPISLGHYLLA-YASMFQRDINRL 72
LL T K +TD LS I T + LL Y +D+ R
Sbjct: 269 LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-----VKS--LLLKYLDCRPQDLPRE 321
Query: 73 IDCRKRVNISPLG----SAALAGTTHHINRYLTAKLLDFEKPSENSLDSISD-------R 121
+ + +P + ++ + + E+SL+ +
Sbjct: 322 V-----LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 122 DFVIEF-----ISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKN-- 174
+ F I T L ++ I + ++ +N S + Q K
Sbjct: 377 RLSV-FPPSAHIPTILLSLIWFDVIKSDVMVVVN----------KLHKYSLVEKQPKEST 425
Query: 175 ---PDVK-DLRQRAALAGTTHH--INRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTC 228
P + +L+ + H ++ Y K D + LD +
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLD-----QYFYSH---- 476
Query: 229 CLIVMHLSRI--SEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIR--GKTGR 284
I HL I E +F +F FL ++K IR
Sbjct: 477 --IGHHLKNIEHPERMTLFRMVFLDF-----RFL-------EQK-------IRHDSTAWN 515
Query: 285 IYANLINILTTMKCQTLAYNKDLQEDKLPLFDT-VDNIIMCLVASGK---------LIEK 334
+++N L +K Y + ++ P ++ V+ I+ L + L+
Sbjct: 516 ASGSILNTLQQLK----FYKPYICDND-PKYERLVNAILDFLPKIEENLICSKYTDLLRI 570
Query: 335 ATFNEQE-MYETAIK 348
A E E ++E A K
Sbjct: 571 ALMAEDEAIFEEAHK 585
Score = 62.2 bits (150), Expect = 2e-10
Identities = 69/505 (13%), Positives = 155/505 (30%), Gaps = 148/505 (29%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTI----MPGF------------THFQ 47
D +++ + ++ + + L + + L +L + AK + + G Q
Sbjct: 121 NDNQVFAKYNVSRL-QPYLKLRQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177
Query: 48 IAQP-----ISLGHY-----LLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHIN 97
++L + +L M Q + ID S+ + H I
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLE---MLQ-KLLYQID--PNWTSRSDHSSNIKLRIHSIQ 231
Query: 98 RYLTAKLLDFEKPSENSL---DSISDRDFVIEFISTCCLIVMHLSR---------ISEEF 145
L + L KP EN L ++ + F +C +++ +R +
Sbjct: 232 AEL--RRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL--TTRFKQVTDFLSAATTT 287
Query: 146 IIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQRA--------ALAGT-----THH 192
I ++ LT E S++ + + +DL + ++
Sbjct: 288 HISLDHHSMTLTPDEVK----SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT 343
Query: 193 INRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNF 252
+ + E+SL+ + ++ F + +F
Sbjct: 344 WDNWKHVNCDKLTTIIESSLNVLEPAEYRKMF---------------DRLSVF------- 381
Query: 253 LTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKL 312
P S + I +L LI I ++++ ++ + +L K +E +
Sbjct: 382 ---PPS----AHIPTI-----LLSLIWFDV--IKSDVMVVVNKLHKYSLV-EKQPKESTI 426
Query: 313 PLFDTVDNIIMCLVASG--------KLIEKATFNEQEMYETAIKGFSISTDVAD-YLVKK 363
+ I + L +++ +N + ++ + D Y
Sbjct: 427 SIPS----IYLELKVKLENEYALHRSIVDH--YNIPKTFD----SDDLIPPYLDQYF--- 473
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
+ SH I + H K++ E T + +D +E I+ +
Sbjct: 474 ---Y--SH------IGH----H--LKNIEHPERMTLFRMV---FLDFRFLEQKIR-HDST 512
Query: 424 GGTSPEQVKITVQGFRFYIQKITNK 448
+ + T+Q +FY I +
Sbjct: 513 AWNASGSILNTLQQLKFYKPYICDN 537
Score = 28.7 bits (63), Expect = 5.6
Identities = 22/140 (15%), Positives = 49/140 (35%), Gaps = 32/140 (22%)
Query: 273 DVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDNIIMCLVASGKLI 332
DV ++ + +IL+ + + +KD L LF L++ + +
Sbjct: 37 DVQDMPK-----------SILSKEEIDHIIMSKDAVSGTLRLFW-------TLLSKQEEM 78
Query: 333 EKATFNE--QEMYE---TAIKGFSI--STDVADYLVKKGVPFRTSHEIVGSIIKYCNEKH 385
+ E + Y+ + IK S Y+ ++ + + KY +
Sbjct: 79 VQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQ----VFAKYNVSRL 134
Query: 386 KTFKDL--SLAELKTFHSYI 403
+ + L +L EL+ +
Sbjct: 135 QPYLKLRQALLELRP-AKNV 153
>2qga_B Adenylosuccinate lyase; malaria, PV003765, SGC, structural G
consortium; HET: AMP; 2.01A {Plasmodium vivax} PDB:
2hvg_A
Length = 465
Score = 59.5 bits (144), Expect = 8e-10
Identities = 27/166 (16%), Positives = 60/166 (36%), Gaps = 6/166 (3%)
Query: 15 DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLID 74
D++I L ++ L DL+ +++ + TH Q A + G + + + + +
Sbjct: 140 DVVIPCLEKIMLKLKDLAVEYSHVPLLSRTHGQPASSTTFGKEMANFYARIHHHVGVIRR 199
Query: 75 CRKRVNIS-PLGSAA---LAGTTHHINRYLTAKLLDFEKPSENSLDS-ISDRDFVIEFIS 129
+ + +G+ +A + L + + + I D D++ E
Sbjct: 200 VKVCAKFNGAVGNFNAHKVASKDTDWVNTIGLFLKKHFNLTYSIYCTQIQDHDYICELCD 259
Query: 130 TCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNP 175
L + + ++++ + GSS MP K NP
Sbjct: 260 GLARANGTLIDLCVDIWLYISNNL-LKLKVKEKEVGSSTMPHKVNP 304
Score = 34.9 bits (80), Expect = 0.046
Identities = 32/239 (13%), Positives = 82/239 (34%), Gaps = 24/239 (10%)
Query: 215 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDV 274
I D D++ E L + + ++++ + GSS MP K NP
Sbjct: 248 IQDHDYICELCDGLARANGTLIDLCVDIWLYISNNL-LKLKVKEKEVGSSTMPHKVNPID 306
Query: 275 LELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLP--LFDTVDNIIMCLVASGKLI 332
E G A K T +DL + + + ++ ++ + K +
Sbjct: 307 FENAEGNLHIANAFFKLFS--SKLPTSRLQRDLSDSTVLRNIGSSLAYCLIAYKSVLKGL 364
Query: 333 EKATFNEQEMYET-AIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDL 391
K + + + E +++ + + + ++E + + K ++
Sbjct: 365 NKIDIDRRNLEEELNQNWSTLAEPIQIVMKRHNYV--DAYEELKQFTRGKVIDQKIMQEF 422
Query: 392 SLAELKTFHSYISDDIIDILCIENSIKFKNHIGGTSPEQVKITVQGFRFYIQKITNKLE 450
+KT +++ D++D L + + G + K +++++ + +
Sbjct: 423 ----IKTKCAFLPQDVVDQL---LELTPATYT-GYADYLAK--------NVERLSGERD 465
>3bhg_A Adenylosuccinate lyase; structural G PSI-2, protein structure
initiative, midwest center for STR genomics, MCSG; 1.90A
{Legionella pneumophila subsp}
Length = 459
Score = 59.6 bits (144), Expect = 9e-10
Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 13/169 (7%)
Query: 15 DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLID 74
+I + ++ +T L +HA M TH Q A P ++G L+ + + +R +L +
Sbjct: 144 QVIQPTIAEIMGSITLLGKQHADVAMLSRTHGQPATPTTMGKELVNFVARLKRPQQQLAE 203
Query: 75 CRKRVNIS-PLGSAALAGTTH-------HINRYLTAKLLDFEKPSENSLDSISDRDFVIE 126
+ +G+ + H ++T+ L F + I D + E
Sbjct: 204 VLIPAKFNGAVGNYNAHVAAYPEVDWRKHCANFVTSLGLSFNAYTTQ----IEPHDGIAE 259
Query: 127 FISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNP 175
I L +++ +++ + F + GSS MP K NP
Sbjct: 260 VSQIMVRINNILLDYTQDIWSYISLGY-FKQKTIAEEVGSSTMPHKVNP 307
Score = 31.9 bits (72), Expect = 0.42
Identities = 39/244 (15%), Positives = 83/244 (34%), Gaps = 22/244 (9%)
Query: 192 HINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFN 251
H ++T+ L F + I D + E I L +++ +++ +
Sbjct: 232 HCANFVTSLGLSFNAYTTQ----IEPHDGIAEVSQIMVRINNILLDYTQDIWSYISLGY- 286
Query: 252 FLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDK 311
F + GSS MP K NP E G G A I+ K +DL +
Sbjct: 287 FKQKTIAEEVGSSTMPHKVNPIDFENAEGNLGLSNALFIHFA--NKLTQSRMQRDLSDST 344
Query: 312 LP--LFDTVDNIIMCLVASGKLIEKATFNEQEMYET-AIKGFSISTDVADYLVKKGVPFR 368
+ L ++ + K +K N+ + + + ++ + + + P
Sbjct: 345 VLRNLGVAFSYSLIAYHSVAKGNDKLQINKSALQKDLSENWEVLAEAIQTVMRRYNEP-- 402
Query: 369 TSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIGGTSP 428
++E + + + + K + L I ++ L + + + G +
Sbjct: 403 NAYEQLKELTRGQMIDAENLKKF-IKTLS-----IPEEAKAEL---MKLTPETYT-GLAT 452
Query: 429 EQVK 432
+ VK
Sbjct: 453 QLVK 456
>2ptr_A Adenylosuccinate lyase; mutant-substrate complex; HET: 2SA; 1.85A
{Escherichia coli} PDB: 2ptq_A* 2pts_A 3gzh_A
Length = 462
Score = 54.2 bits (130), Expect = 4e-08
Identities = 29/169 (17%), Positives = 57/169 (33%), Gaps = 13/169 (7%)
Query: 15 DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRLID 74
++I+ +I L DL+ ++ + T Q A P ++G + A +R +L
Sbjct: 141 EVILPYWRQLIDGLKDLAVQYRDIPLLSRTAGQPATPSTIGKEMANVAYRMERQYRQLNQ 200
Query: 75 CRKRVNIS-PLGSAALAGTT-------HHINRYLTAKLLDFEKPSENSLDSISDRDFVIE 126
I+ +G+ ++T+ + + + I D++ E
Sbjct: 201 VEILGKINGAVGNYNAHIAAYPEVDWHQFSEEFVTSLGIQWNPYTTQ----IEPHDYIAE 256
Query: 127 FISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNP 175
L + ++ F + GSS MP K NP
Sbjct: 257 LFDCVARFNTILIDFDRDVWGYIALNH-FKQKTIAGEIGSSTMPHKVNP 304
Score = 30.3 bits (68), Expect = 1.2
Identities = 34/221 (15%), Positives = 73/221 (33%), Gaps = 18/221 (8%)
Query: 215 ISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDV 274
I D++ E L + ++ F + GSS MP K NP
Sbjct: 248 IEPHDYIAELFDCVARFNTILIDFDRDVWGYIALNH-FKQKTIAGEIGSSTMPHKVNPID 306
Query: 275 LELIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLP--LFDTVDNIIMCLVASGKLI 332
E G G A L ++ K + +DL + + L + ++ ++ K +
Sbjct: 307 FENSEGNLGLSNAVLQHL--ASKLPVSRWQRDLTDSTVLRNLGVGIGYALIAYQSTLKGV 364
Query: 333 EKATFNEQEMYET-AIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDL 391
K N + + ++ + + + G+ +E + + + + K
Sbjct: 365 SKLEVNRDHLLDELDHNWEVLAEPIQTVMRRYGIE--KPYEKLKELTRGKRVDAEGMKQF 422
Query: 392 SLAELKTFHSYISDDIIDILCIENSIKFKNHIGGTSPEQVK 432
+ L + ++ L ++ N+I G + V
Sbjct: 423 -IDGLA-----LPEEEKARL---KAMTPANYI-GRAITMVD 453
>1jsw_A L-aspartase, L-aspartate ammonia-lyase; amino acid ammonia-lyase;
HET: BGC; 2.70A {Escherichia coli} SCOP: a.127.1.1
Length = 478
Score = 52.9 bits (128), Expect = 1e-07
Identities = 42/183 (22%), Positives = 78/183 (42%), Gaps = 25/183 (13%)
Query: 13 HIDIIIEL--LLTMIKHLTD-LSDK---HAKTIMPGFTHFQIAQPISLGHYLLAYASMFQ 66
I + L L+ I L + K + G T Q A P++LG A++ + +
Sbjct: 153 RIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRAFSILLK 212
Query: 67 RDINRLIDCRKRVNISPLGSAALAGT---THH-----INRYLTAKL--LDFEKPSENSLD 116
++ + + + LG+ A+ GT T + L A++ P+E+ ++
Sbjct: 213 EEVKNIQRTAELLLEVNLGATAI-GTGLNTPKEYSPLAVKKL-AEVTGFPC-VPAEDLIE 269
Query: 117 SISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQ--FNFLTLPESFLTGSSIMPQK 172
+ SD + + + +S+I + + ++ P+ N + LPE GSSIMP K
Sbjct: 270 ATSDCGAYVMVHGALKRLAVKMSKICND-LRLLSSGPRAGLNEINLPEL-QAGSSIMPAK 327
Query: 173 KNP 175
NP
Sbjct: 328 VNP 330
Score = 29.0 bits (66), Expect = 3.3
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 262 GSSIMPQKKNP 272
GSSIMP K NP
Sbjct: 320 GSSIMPAKVNP 330
>3ocf_A Fumarate lyase:delta crystallin; fumarase, brucellosis, orchitis,
epididymiti mastitis, dehydration of fumarate to malate,
KREB'S cycle; 2.10A {Brucella melitensis} PDB: 3oce_A
Length = 478
Score = 52.1 bits (126), Expect = 2e-07
Identities = 45/183 (24%), Positives = 76/183 (41%), Gaps = 25/183 (13%)
Query: 13 HIDIIIEL--LLTMIKHLTD-LSDK---HAKTIMPGFTHFQIAQPISLGHYLLAYASMFQ 66
+ +++ + T + L K A I G T Q A PI+LG A+A+ +
Sbjct: 170 RLALLLSQNQVQTALHRLIAAFEAKGREFATVIKIGRTQLQDAVPITLGQEFEAFAATLR 229
Query: 67 RDINRLIDCRKRVNISPLGSAALAGT---THH-----INRYLTAKL--LDFEKPSENSLD 116
D RL + LG A+ GT H L +++ ++ K + N ++
Sbjct: 230 EDTARLEEVAALFREVNLGGTAI-GTRINASHAYAEQAIVEL-SQISGIEL-KATGNLVE 286
Query: 117 SISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQ--FNFLTLPESFLTGSSIMPQK 172
+ D + F I + LS+I+ + + ++ P+ + LP GSSIMP K
Sbjct: 287 ASWDTGAFVTFSGILRRIAVKLSKIAND-LRLLSSGPRSGLGEIRLPAV-QPGSSIMPGK 344
Query: 173 KNP 175
NP
Sbjct: 345 VNP 347
Score = 29.0 bits (66), Expect = 3.2
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 262 GSSIMPQKKNP 272
GSSIMP K NP
Sbjct: 337 GSSIMPGKVNP 347
>3r6q_A Aspartase; aspartate ammonia lyase, lyase; 2.40A {Bacillus SP} PDB:
1j3u_A 3r6v_A 3r6y_A
Length = 468
Score = 52.1 bits (126), Expect = 2e-07
Identities = 50/186 (26%), Positives = 85/186 (45%), Gaps = 19/186 (10%)
Query: 4 TDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
T + ++ +IE M + +D+ A I G TH Q A PI LG AYA
Sbjct: 147 TATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEAYAR 206
Query: 64 MFQRDINRLIDCRKRVNISPLGSAALAGT---TH-----HINRYLTAKL--LDFEKPSEN 113
+ RDI R+ + R + +G+ A+ GT + +L AK + +++
Sbjct: 207 VIARDIERIANTRNNLYDINMGATAV-GTGLNADPEYISIVTEHL-AKFSGHPL-RSAQH 263
Query: 114 SLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQ--FNFLTLPESFLTGSSIM 169
+D+ + D E S + ++++S+I+ + + M P+ + + LP GSSIM
Sbjct: 264 LVDATQNTDCYTEVSSALKVCMINMSKIAND-LRLMASGPRAGLSEIVLPAR-QPGSSIM 321
Query: 170 PQKKNP 175
P K NP
Sbjct: 322 PGKVNP 327
Score = 29.0 bits (66), Expect = 3.4
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 262 GSSIMPQKKNP 272
GSSIMP K NP
Sbjct: 317 GSSIMPGKVNP 327
>3e04_A Fumarase, fumarate hydratase; TCA cycle, structural genomics
consortium, alterna initiation, anti-oncogene, cell
cycle, disease mutation; 1.95A {Homo sapiens}
Length = 490
Score = 49.9 bits (120), Expect = 1e-06
Identities = 50/184 (27%), Positives = 76/184 (41%), Gaps = 26/184 (14%)
Query: 13 HIDIIIEL-------LLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMF 65
HI IE+ L + L S + A+ I G TH Q A P++LG Y
Sbjct: 176 HIAAAIEVHEVLLPGLQKLHDALDAKSKEFAQIIKIGRTHTQDAVPLTLGQEFSGYVQQV 235
Query: 66 QRDINRLIDCRKRVNISPLGSAALAGT---TH-----HINRYLTAKL--LDFEKPSENSL 115
+ + R+ R+ G A+ GT T + + A L L F + N
Sbjct: 236 KYAMTRIKAAMPRIYELAAGGTAV-GTGLNTRIGFAEKVAAKV-AALTGLPF-VTAPNKF 292
Query: 116 DSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQFNF--LTLPESFLTGSSIMPQ 171
++++ D ++E L +I+ + I F+ P+ L LPE+ GSSIMP
Sbjct: 293 EALAAHDALVELSGAMNTTACSLMKIAND-IRFLGSGPRSGLGELILPENEP-GSSIMPG 350
Query: 172 KKNP 175
K NP
Sbjct: 351 KVNP 354
Score = 29.1 bits (66), Expect = 3.1
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 253 LTLPESFLTGSSIMPQKKNP 272
L LPE+ GSSIMP K NP
Sbjct: 336 LILPENEP-GSSIMPGKVNP 354
>3gtd_A Fumarase C, fumarate hydratase class II; structural genomics,
ssgcid, lyase, tricarboxylic acid cycle; 2.40A
{Rickettsia prowazekii}
Length = 482
Score = 49.1 bits (118), Expect = 2e-06
Identities = 51/184 (27%), Positives = 82/184 (44%), Gaps = 26/184 (14%)
Query: 13 HIDIIIEL-------LLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMF 65
HI ++ L ++ +L D S K I G TH Q A P++L Y +
Sbjct: 170 HIATVLATKQQLIPALNNLLTYLQDKSKDWDKIIKIGRTHLQDATPLTLKQEFSGYITQI 229
Query: 66 QRDINRLIDCRKRVNISPLGSAALAGT---TH-----HINRYLTAKL--LDFEKPSENSL 115
+ + R+ D K+V + G A+ GT + + + A+ F K + N
Sbjct: 230 EYALERIEDALKKVYLLAQGGTAV-GTGINSKIGFDIKFAQKV-AEFTQQPF-KTAPNKF 286
Query: 116 DSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQFNF--LTLPESFLTGSSIMPQ 171
+S++ D ++EF T I + L +I+ + I + P+ L LPE+ GSSIMP
Sbjct: 287 ESLAAHDALVEFSGTLNTIAVSLMKIAND-IRLLGSGPRCGLGELHLPENEP-GSSIMPG 344
Query: 172 KKNP 175
K NP
Sbjct: 345 KVNP 348
Score = 29.1 bits (66), Expect = 3.3
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 262 GSSIMPQKKNP 272
GSSIMP K NP
Sbjct: 338 GSSIMPGKVNP 348
>1fur_A Fumarase C, FUMC; hydrolyase, carbon oxygen lyase, KREB'S cycle
enzyme, fumara hydratase; 1.95A {Escherichia coli} SCOP:
a.127.1.1 PDB: 1fuo_A* 1yfe_A 1kq7_A* 1fuq_A* 1fup_A*
2fus_A* 3tv2_A
Length = 467
Score = 49.1 bits (118), Expect = 2e-06
Identities = 43/184 (23%), Positives = 82/184 (44%), Gaps = 26/184 (14%)
Query: 13 HIDIIIEL---LLTMIKHLTD----LSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMF 65
H+ ++ L L+ +K LT S A + G T+ Q A P++LG + + +M
Sbjct: 149 HVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTNLQDATPLTLGQEISGWVAML 208
Query: 66 QRDINRLIDCRKRVNISPLGSAALAGT---TH-----HINRYLTAKL--LDFEKPSENSL 115
+ ++ + V LG A+ GT TH + L A + F + N
Sbjct: 209 EHNLKHIEYSLPHVAELALGGTAV-GTGLNTHPEYARRVADEL-AVITCAPF-VTAPNKF 265
Query: 116 DSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQFNF--LTLPESFLTGSSIMPQ 171
++++ D +++ + L +I+ + + ++ P+ +++PE+ GSSIMP
Sbjct: 266 EALATCDALVQAHGALKGLAASLMKIAND-VRWLASGPRCGIGEISIPENEP-GSSIMPG 323
Query: 172 KKNP 175
K NP
Sbjct: 324 KVNP 327
Score = 29.0 bits (66), Expect = 3.3
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 262 GSSIMPQKKNP 272
GSSIMP K NP
Sbjct: 317 GSSIMPGKVNP 327
>1yfm_A Fumarase, YFUM; lyase, krebs cycle, active site water, hydratase,
subunit active site; 2.60A {Saccharomyces cerevisiae}
SCOP: a.127.1.1
Length = 488
Score = 48.7 bits (117), Expect = 2e-06
Identities = 46/184 (25%), Positives = 79/184 (42%), Gaps = 26/184 (14%)
Query: 13 HIDIIIEL-------LLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMF 65
HI +++ L + L S + + G TH Q A P++LG Y
Sbjct: 174 HIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFSGYVQQV 233
Query: 66 QRDINRLIDCRKRVNISPLGSAALAGT---TH-----HINRYLTAKL--LDFEKPSENSL 115
+ I R+ K ++ G A+ GT T I + +K L F + + N
Sbjct: 234 ENGIQRVAHSLKTLSFLAQGGTAV-GTGLNTKPGFDVKIAEQI-SKETGLKF-QTAPNRF 290
Query: 116 DSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQFNF--LTLPESFLTGSSIMPQ 171
++++ D ++E + L +I+++ I ++ P+ + L LPE+ GSSIMP
Sbjct: 291 EALAAHDAIVECSGALNTLACSLFKIAQD-IRYLGSGPRCGYHELMLPENEP-GSSIMPG 348
Query: 172 KKNP 175
K NP
Sbjct: 349 KVNP 352
Score = 29.1 bits (66), Expect = 3.2
Identities = 13/20 (65%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 253 LTLPESFLTGSSIMPQKKNP 272
L LPE+ GSSIMP K NP
Sbjct: 334 LMLPENEP-GSSIMPGKVNP 352
>1vdk_A Fumarase C, fumarate hydratase class II; TCA cycle, riken
structural genomics/proteomics in RSGI, structural
genomics, lyase; 1.80A {Thermus thermophilus} SCOP:
a.127.1.1
Length = 466
Score = 48.3 bits (116), Expect = 3e-06
Identities = 40/184 (21%), Positives = 82/184 (44%), Gaps = 26/184 (14%)
Query: 13 HIDIIIEL-------LLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYASMF 65
++ + + L + +I+ T + + + G TH A PI+LG + ++A+
Sbjct: 149 YVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIGSWAAQL 208
Query: 66 QRDINRLIDCRKRVNISPLGSAALAGT---TH-----HINRYLTAKL--LDFEKPSENSL 115
+ + + + K + +G A+ GT H + +YL A+ L F + +EN
Sbjct: 209 KTTLAAVKEMEKGLYNLAIGGTAV-GTGLNAHPRFGELVAKYL-AEETGLPF-RVAENRF 265
Query: 116 DSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN--PQFNF--LTLPESFLTGSSIMPQ 171
+++ D ++ + + L +I + + ++ P +T+P + GSSIMP
Sbjct: 266 AALAAHDELVNVMGAIRTLAGALMKIGND-VRWLASGPYAGIGEITIPANEP-GSSIMPG 323
Query: 172 KKNP 175
K NP
Sbjct: 324 KVNP 327
Score = 29.1 bits (66), Expect = 3.0
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 253 LTLPESFLTGSSIMPQKKNP 272
+T+P + GSSIMP K NP
Sbjct: 309 ITIPANEP-GSSIMPGKVNP 327
>4adm_A Fumarase C, fumarate hydratase class II; lyase, tricarboxylic acid
cycle; HET: SRT; 1.65A {Mycobacterium tuberculosis} PDB:
4adl_A* 3no9_A 4apa_A 4apb_A 3qbp_A 3rd8_A 3rrp_A
Length = 495
Score = 46.4 bits (111), Expect = 1e-05
Identities = 47/177 (26%), Positives = 77/177 (43%), Gaps = 22/177 (12%)
Query: 17 IIELLLTMIKHLTD-LSDK---HAKTIMPGFTHFQIAQPISLGHYLLAYASMFQRDINRL 72
+ L+ ++ L D L+ K + G TH A P++LG YA + I R+
Sbjct: 177 AVAHLIPALQQLHDALAAKALDWHTVVKSGRTHLMDAVPVTLGQEFSGYARQIEAGIERV 236
Query: 73 IDCRKRVNISPLGSAALAGT---TH-----HINRYLTA--KLLDFEKPSENSLDSISDRD 122
C R+ +G A+ GT + L A L + + + NS ++ + RD
Sbjct: 237 RACLPRLGELAIGGTAV-GTGLNAPDDFGVRVVAVLVAQTGLSEL-RTAANSFEAQAARD 294
Query: 123 FVIEFISTCCLIVMHLSRISEEFIIFMN--PQFNF--LTLPESFLTGSSIMPQKKNP 175
++E I + L++I+ + I +M P + LP+ GSSIMP K NP
Sbjct: 295 GLVEASGALRTIAVSLTKIAND-IRWMGSGPLTGLAEIQLPDL-QPGSSIMPGKVNP 349
Score = 29.1 bits (66), Expect = 3.1
Identities = 9/11 (81%), Positives = 9/11 (81%)
Query: 262 GSSIMPQKKNP 272
GSSIMP K NP
Sbjct: 339 GSSIMPGKVNP 349
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.324 0.139 0.399
Gapped
Lambda K H
0.267 0.0727 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,962,153
Number of extensions: 422661
Number of successful extensions: 1209
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1154
Number of HSP's successfully gapped: 73
Length of query: 455
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 358
Effective length of database: 3,993,456
Effective search space: 1429657248
Effective search space used: 1429657248
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 59 (26.5 bits)