RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3416
(455 letters)
>d1tj7a_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Escherichia coli [TaxId: 562]}
Length = 455
Score = 208 bits (530), Expect = 7e-63
Identities = 106/249 (42%), Positives = 153/249 (61%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
ALAGT + I+R A L F + NSLDS+SDRD V+E +S + ++HLSR +E+ I
Sbjct: 196 GALAGTAYEIDREQLAGWLGFASATRNSLDSVSDRDHVLELLSAAAIGMVHLSRFAEDLI 255
Query: 244 IFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAY 303
F + F+ L + +GSS+MPQKKNPD LELIRGK GR+ L ++ T+K LAY
Sbjct: 256 FFNTGEAGFVELSDRVTSGSSLMPQKKNPDALELIRGKCGRVQGALTGMMMTLKGLPLAY 315
Query: 304 NKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKK 363
NKD+QEDK LFD +D + CL + +++ E A +G++ +T++ADYLV K
Sbjct: 316 NKDMQEDKEGLFDALDTWLDCLHMAALVLDGIQVKRPRCQEAAQQGYANATELADYLVAK 375
Query: 364 GVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHI 423
GVPFR +H IVG + + K +DL L+EL+ F I +D+ IL +++ + +
Sbjct: 376 GVPFREAHHIVGEAVVEAIRQGKPLEDLPLSELQKFSQVIDEDVYPILSLQSCLDKRAAK 435
Query: 424 GGTSPEQVK 432
GG SP+QV
Sbjct: 436 GGVSPQQVA 444
Score = 111 bits (278), Expect = 3e-27
Identities = 81/262 (30%), Positives = 135/262 (51%), Gaps = 6/262 (2%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
+ TDL+L+ + + ++ + L + + + +MPG+TH Q AQP++ H+ LA
Sbjct: 110 QVATDLKLWCKDTVSELLTANRQLQSALVETAQNNQDAVMPGYTHLQRAQPVTFAHWCLA 169
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISD 120
Y M RD +RL D KR+++SPLG ALAGT + I+R A L F + NSLDS+SD
Sbjct: 170 YVEMLARDESRLQDALKRLDVSPLGCGALAGTAYEIDREQLAGWLGFASATRNSLDSVSD 229
Query: 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL 180
RD V+E +S + ++HLSR +E+ I F + F+ L + +GSS+MPQKKNPD +L
Sbjct: 230 RDHVLELLSAAAIGMVHLSRFAEDLIFFNTGEAGFVELSDRVTSGSSLMPQKKNPDALEL 289
Query: 181 RQRAALAGTTHHINRYLTAKLLDFEK-PSENSLDSISDRDFVIEFISTCCLIVMHLSRIS 239
+ G + LT ++ + P + D D++ + + + T + + +
Sbjct: 290 IR-----GKCGRVQGALTGMMMTLKGLPLAYNKDMQEDKEGLFDALDTWLDCLHMAALVL 344
Query: 240 EEFIIFMNPQFNFLTLPESFLT 261
+ + + T
Sbjct: 345 DGIQVKRPRCQEAAQQGYANAT 366
>d1tjva_ a.127.1.1 (A:) Argininosuccinate lyase/delta-crystallin
{Domestic duck (Anas platyrhynchos), delta-crystallin
[TaxId: 8839]}
Length = 449
Score = 180 bits (457), Expect = 2e-52
Identities = 104/268 (38%), Positives = 156/268 (58%), Gaps = 1/268 (0%)
Query: 181 RQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240
ALAG I+R + L+F S NS+D+IS+RDFV+EF+S L+++HLS+++E
Sbjct: 183 LGSGALAGNPLDIDREMLRSELEFASISLNSMDAISERDFVVEFLSFATLLMIHLSKMAE 242
Query: 241 EFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQT 300
+ II+ +F FLTL ++F TGSS+MPQKKNPD LELIR K GR++ L +IL +K
Sbjct: 243 DLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLELIRSKAGRVFGRLASILMVLKGLP 302
Query: 301 LAYNKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYL 360
YNKDLQEDK +FD VD + L + +I +++ M + + ++TD+A YL
Sbjct: 303 STYNKDLQEDKEAVFDVVDTLTAVLQVATGVISTLQISKENMEKA-LTPEMLATDLALYL 361
Query: 361 VKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFK 420
V+KGVPFR +H G + K T LSL +LK+ S D+ + NS++
Sbjct: 362 VRKGVPFRQAHTASGKAVHLAETKGITINKLSLEDLKSISPQFSSDVSQVFNFVNSVEQY 421
Query: 421 NHIGGTSPEQVKITVQGFRFYIQKITNK 448
+ GT+ V ++ R ++K +
Sbjct: 422 TALAGTAKSSVTTQIEQLRELMKKQKEQ 449
Score = 99.3 bits (246), Expect = 4e-23
Identities = 92/247 (37%), Positives = 142/247 (57%), Gaps = 4/247 (1%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
+VTDL+L+ + + II LL +IK L + + I+PG+ H Q AQPI +LL+
Sbjct: 100 QVVTDLKLFMKNSLSIISTHLLQLIKTLVERAAIEIDVILPGYDHLQKAQPIRWSQFLLS 159
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISD 120
+A RD RL + +KR+N+ PLGS ALAG I+R + L+F S NS+D+IS+
Sbjct: 160 HAVALTRDSERLGEVKKRINVLPLGSGALAGNPLDIDREMLRSELEFASISLNSMDAISE 219
Query: 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL 180
RDFV+EF+S L+++HLS+++E+ II+ +F FLTL ++F TGSS+MPQKKNPD +L
Sbjct: 220 RDFVVEFLSFATLLMIHLSKMAEDLIIYSTSEFGFLTLSDAFSTGSSLMPQKKNPDSLEL 279
Query: 181 RQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240
+ A + + K L PS + D D++ V + + T ++ + +
Sbjct: 280 IRSKAGRVFGRLASILMVLKGL----PSTYNKDLQEDKEAVFDVVDTLTAVLQVATGVIS 335
Query: 241 EFIIFMN 247
I
Sbjct: 336 TLQISKE 342
>d1k62b_ a.127.1.1 (B:) Argininosuccinate lyase/delta-crystallin
{Human (Homo sapiens) [TaxId: 9606]}
Length = 459
Score = 177 bits (448), Expect = 6e-51
Identities = 91/247 (36%), Positives = 142/247 (57%), Gaps = 1/247 (0%)
Query: 186 LAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIF 245
+AG ++R L L+F + NS+D+ S+RDFV EF+ L + HLSR++E+ I++
Sbjct: 199 IAGNPLGVDRELLRAELNFGAITLNSMDATSERDFVAEFLFWRSLCMTHLSRMAEDLILY 258
Query: 246 MNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNK 305
+F+F+ L +++ TGSS+MP+KKNPD LELIR K GR++ +L T+K YNK
Sbjct: 259 CTKEFSFVQLSDAYSTGSSLMPRKKNPDSLELIRSKAGRVFGRCAGLLMTLKGLPSTYNK 318
Query: 306 DLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGV 365
DLQEDK +F+ D + L + +I +++ M + ++TD+A YLV+KG+
Sbjct: 319 DLQEDKEAVFEVSDTMSAVLQVATGVISTLQIHQENMGQALSPDM-LATDLAYYLVRKGM 377
Query: 366 PFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIKFKNHIGG 425
PFR +HE G + K LSL EL+T S D+I + +S++ +GG
Sbjct: 378 PFRQAHEASGKAVFMAETKGVALNQLSLQELQTISPLFSGDVICVWDYRHSVEQYGALGG 437
Query: 426 TSPEQVK 432
T+ V
Sbjct: 438 TARSSVD 444
Score = 113 bits (283), Expect = 5e-28
Identities = 86/248 (34%), Positives = 138/248 (55%), Gaps = 4/248 (1%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
+VTDLRL+ R+ + LL +I+ + D ++ + PG+TH Q AQPI H++L+
Sbjct: 111 QVVTDLRLWMRQTCSTLSGLLWELIRTMVDRAEAERDVLFPGYTHLQRAQPIRWSHWILS 170
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISD 120
+A RD RL++ RKR+N+ PLGS A+AG ++R L L+F + NS+D+ S+
Sbjct: 171 HAVALTRDSERLLEVRKRINVLPLGSGAIAGNPLGVDRELLRAELNFGAITLNSMDATSE 230
Query: 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDL 180
RDFV EF+ L + HLSR++E+ I++ +F+F+ L +++ TGSS+MP+KKNPD +L
Sbjct: 231 RDFVAEFLFWRSLCMTHLSRMAEDLILYCTKEFSFVQLSDAYSTGSSLMPRKKNPDSLEL 290
Query: 181 RQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISE 240
+ A +T K L PS + D D++ V E T ++ + +
Sbjct: 291 IRSKAGRVFGRCAGLLMTLKGL----PSTYNKDLQEDKEAVFEVSDTMSAVLQVATGVIS 346
Query: 241 EFIIFMNP 248
I
Sbjct: 347 TLQIHQEN 354
>d1c3ca_ a.127.1.1 (A:) Adenylosuccinate lyase {Thermotoga maritima
[TaxId: 2336]}
Length = 429
Score = 131 bits (331), Expect = 1e-34
Identities = 44/248 (17%), Positives = 88/248 (35%), Gaps = 12/248 (4%)
Query: 183 RAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEF 242
A A KP S + RD ++ST ++ + RI+ E
Sbjct: 181 GAVGNYANVPPEVEEKALSYLGLKPEPVS-TQVVPRDRHAFYLSTLAIVAAGIERIAVEI 239
Query: 243 IIFMNPQFNFLTLPES-FLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTL 301
+ + P GSS MP KKNP E + G + + A + +++ L
Sbjct: 240 RHLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCERLTGLSRMMRAYVD---PSLENIAL 296
Query: 302 AYNKDLQEDKLPLFDTVDNIIMCL------VASGKLIEKATFNEQEMYETAIKGFSISTD 355
+ +D+ + + D + ++ ++ + KG S
Sbjct: 297 WHERDISHSSVERYVFPDATQTLYYMIVTATNVVRNMKVNEERMKKNID-LTKGLVFSQR 355
Query: 356 VADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIEN 415
V L++KG+ + +++IV K F + L + + +++ ++ I
Sbjct: 356 VLLKLIEKGLTRKEAYDIVQRNALKTWNSEKHFLEYLLEDEEVKKLVTKEELEELFDISY 415
Query: 416 SIKFKNHI 423
+K +HI
Sbjct: 416 YLKHVDHI 423
Score = 101 bits (253), Expect = 3e-24
Identities = 43/194 (22%), Positives = 75/194 (38%), Gaps = 3/194 (1%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
++ T L + I++E L L ++++++ T G TH A+P S G +L
Sbjct: 96 VLDTANSLALVEAGKILLESLKEFCDVLWEVANRYKHTPTIGRTHGVHAEPTSFGLKVLG 155
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSISD 120
+ S +R++ RL + V+ + A A KP S +
Sbjct: 156 WYSEMKRNVQRLERAIEEVSYGKISGAVGNYANVPPEVEEKALSYLGLKPEPVS-TQVVP 214
Query: 121 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPES-FLTGSSIMPQKKNPDV-K 178
RD ++ST ++ + RI+ E + + P GSS MP KKNP +
Sbjct: 215 RDRHAFYLSTLAIVAAGIERIAVEIRHLQRTEVLEVEEPFRKGQRGSSAMPHKKNPITCE 274
Query: 179 DLRQRAALAGTTHH 192
L + +
Sbjct: 275 RLTGLSRMMRAYVD 288
>gi|89101013|ref|ZP_01173856.1|(9-416:430) adenylosuccinate lyase
[Bacillus sp. NRRL B-14911] gi|89084274|gb|EAR63432.1|
adenylosuccinate lyase [Bacillus sp. NRRL B-14911] E=0
s/c=1.85 id=87% cov=100%
Length = 408
Score = 128 bits (323), Expect = 1e-33
Identities = 41/237 (17%), Positives = 81/237 (34%), Gaps = 4/237 (1%)
Query: 179 DLRQRAALAGTTHHINRYLTAKLLDFEKPSENSL-DSISDRDFVIEFISTCCLIVMHLSR 237
+ + + GT +IN ++ + + + + RD +++ LI + +
Sbjct: 168 EFGKMSGAVGTYANINPFVESYVCEKLGLQPAPISTQTLQRDRHAHYMAAISLIATSIEK 227
Query: 238 ISEEFIIFMN-PQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTM 296
+ E GSS MP K+NP E + G I +++ +
Sbjct: 228 FAVEIRGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGSENMTGLARVIRGHMLTAYENV 287
Query: 297 KCQTLAYNKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYET--AIKGFSIST 354
+++ L D + L G +++ T + M G S
Sbjct: 288 PLWHERDISHSSAERIILPDATIALNYMLNRFGNIVKNLTVFPENMKRNMDRTLGLIYSQ 347
Query: 355 DVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDIL 411
V L+ KG+ ++++V EK FK L A+ +++I D
Sbjct: 348 RVLLALIDKGMAREEAYDVVQPRAMEAWEKQVAFKSLVEADETISSRLSAEEIEDCF 404
Score = 92.2 bits (228), Expect = 7e-21
Identities = 39/208 (18%), Positives = 76/208 (36%), Gaps = 5/208 (2%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
++ T L ++ I+++ L ++ L + + +H T+M G TH A+P + G L
Sbjct: 89 VVDTALSYLIKQANSILLQDLENFVEILKNKAKEHKYTVMMGRTHGVHAEPTTFGLKLAL 148
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSL-DSIS 119
+ +R++ R V + A GT +IN ++ + + + +
Sbjct: 149 WYEEMKRNLERFKQAASGVEFGKMSGA--VGTYANINPFVESYVCEKLGLQPAPISTQTL 206
Query: 120 DRDFVIEFISTCCLIVMHLSRISEEFIIFMN-PQFNFLTLPESFLTGSSIMPQKKNPDVK 178
RD +++ LI + + + E GSS MP K+NP
Sbjct: 207 QRDRHAHYMAAISLIATSIEKFAVEIRGLQKSETREVEEFFAKGQKGSSAMPHKRNPIGS 266
Query: 179 DLRQRAALAGTTHHINRYLTAKLLDFEK 206
+ H+ L E+
Sbjct: 267 ENM-TGLARVIRGHMLTAYENVPLWHER 293
>d1yfma_ a.127.1.1 (A:) Fumarase {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 459
Score = 115 bits (288), Expect = 2e-28
Identities = 37/238 (15%), Positives = 81/238 (34%), Gaps = 18/238 (7%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFI 243
G I ++ + + + N ++++ D ++E + L +I+++
Sbjct: 236 NTKPGFDVKIAEQISKETGLKFQTAPNRFEALAAHDAIVECSGALNTLACSLFKIAQDIR 295
Query: 244 IFMN-PQFNFLTLP-ESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTL 301
+ P+ + L GSSIMP K NP E + ++ N I
Sbjct: 296 YLGSGPRCGYHELMLPENEPGSSIMPGKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQF 355
Query: 302 AYNKDLQEDKLPLFDTVDNII-MCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYL 360
N L +++ I +E NE ++E K + T + +
Sbjct: 356 ELNVFKPVMIANLLNSIRLITDAAYSFRVHCVEGIKANEPRIHELLTKSLMLVTALNPKI 415
Query: 361 VKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIID-ILCIENSI 417
++ + K ++K T K+ +L +++ D + E+ +
Sbjct: 416 ---------GYDAASKVAKNAHKKGITLKESALEL-----GVLTEKEFDEWVVPEHML 459
Score = 108 bits (270), Expect = 3e-26
Identities = 39/215 (18%), Positives = 76/215 (35%), Gaps = 10/215 (4%)
Query: 1 MIVTDLRLYTRKHI-DIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLL 59
T + + I + +I L + L S + + G TH Q A P++LG
Sbjct: 142 TFPTVMHIAASLQIQNELIPELTNLKNALEAKSKEFDHIVKIGRTHLQDATPLTLGQEFS 201
Query: 60 AYASMFQRDINRLIDCRKRVNISPLGSA-------ALAGTTHHINRYLTAKLLDFEKPSE 112
Y + I R+ K ++ G G I ++ + + +
Sbjct: 202 GYVQQVENGIQRVAHSLKTLSFLAQGGTAVGTGLNTKPGFDVKIAEQISKETGLKFQTAP 261
Query: 113 NSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN-PQFNFLTLP-ESFLTGSSIMP 170
N ++++ D ++E + L +I+++ + P+ + L GSSIMP
Sbjct: 262 NRFEALAAHDAIVECSGALNTLACSLFKIAQDIRYLGSGPRCGYHELMLPENEPGSSIMP 321
Query: 171 QKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFE 205
K NP + + + ++ FE
Sbjct: 322 GKVNPTQNEALTQVCVQVMGNNAAITFAGSQGQFE 356
>d1fuoa_ a.127.1.1 (A:) Fumarase {Escherichia coli [TaxId: 562]}
Length = 456
Score = 111 bits (278), Expect = 2e-27
Identities = 36/246 (14%), Positives = 78/246 (31%), Gaps = 25/246 (10%)
Query: 175 PDVKDLRQRAALAGTTHHINRYLTAKLLDFE--------KPSENSLDSISDRDFVIEFIS 226
P V +L GT + + ++ D + N ++++ D +++
Sbjct: 217 PHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKFEALATCDALVQAHG 276
Query: 227 TCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL--TGSSIMPQKKNPDVLELIRGKTGR 284
+ L +I+ + + + GSSIMP K NP E + +
Sbjct: 277 ALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKVNPTQCEALTMLCCQ 336
Query: 285 IYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDNII-MCLVASGKLIEKATFNEQEMY 343
+ N + I N +V + + N + +
Sbjct: 337 VMGNDVAINMGGASGNFELNVFRPMVIHNFLQSVRLLADGMESFNKHCAVGIEPNRERIN 396
Query: 344 ETAIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYI 403
+ + + T + ++ + + EI K +++ T K +LA Y+
Sbjct: 397 QLLNESLMLVTALNTHI-----GYDKAAEIA----KKAHKEGLTLKAAALAL-----GYL 442
Query: 404 SDDIID 409
S+ D
Sbjct: 443 SEAEFD 448
Score = 109 bits (274), Expect = 8e-27
Identities = 36/212 (16%), Positives = 74/212 (34%), Gaps = 10/212 (4%)
Query: 4 TDLRLYTRK-HIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYA 62
T + + +I L T+ + L + S A + G TH Q A P++LG + +
Sbjct: 143 TAMHVAALLALRKQLIPQLKTLTQTLNEKSRAFADIVKIGRTHLQDATPLTLGQEISGWV 202
Query: 63 SMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFE-------KPSENSL 115
+M + ++ + V LG A+ + Y + + N
Sbjct: 203 AMLEHNLKHIEYSLPHVAELALGGTAVGTGLNTHPEYARRVADELAVITCAPFVTAPNKF 262
Query: 116 DSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL--TGSSIMPQKK 173
++++ D +++ + L +I+ + + + GSSIMP K
Sbjct: 263 EALATCDALVQAHGALKGLAASLMKIANDVRWLASGPRCGIGEISIPENEPGSSIMPGKV 322
Query: 174 NPDVKDLRQRAALAGTTHHINRYLTAKLLDFE 205
NP + + + + +FE
Sbjct: 323 NPTQCEALTMLCCQVMGNDVAINMGGASGNFE 354
>d1vdka_ a.127.1.1 (A:) Fumarase {Thermus thermophilus [TaxId: 274]}
Length = 460
Score = 105 bits (262), Expect = 3e-25
Identities = 37/225 (16%), Positives = 80/225 (35%), Gaps = 17/225 (7%)
Query: 191 HHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQF 250
+ +YL + + +EN +++ D ++ + + L +I + + +
Sbjct: 241 ELVAKYLAEETGLPFRVAENRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPY 300
Query: 251 NFLTLPESFL--TGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDLQ 308
+ GSSIMP K NP +E + R+Y N + N
Sbjct: 301 AGIGEITIPANEPGSSIMPGKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQLNVYKP 360
Query: 309 EDKLPLFDTVDNII-MCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVPF 367
++++ + L + N + + E K ++T + K + +
Sbjct: 361 VMAYSTLESINLLADAVASFDAHLAQGIEPNLERIEEYLQKNPMLATALN-----KAIGY 415
Query: 368 RTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILC 412
+ EIV K ++ KT K +L Y++++ D +
Sbjct: 416 DKAAEIV----KKALKEKKTLKQAALEL-----GYLTEEEFDRIV 451
Score = 93.3 bits (231), Expect = 4e-21
Identities = 32/215 (14%), Positives = 76/215 (35%), Gaps = 10/215 (4%)
Query: 1 MIVTDLRLYTRKHID-IIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLL 59
T + + + + + +I+ T + + + G TH A PI+LG +
Sbjct: 140 TFPTAMYVAVALALHQRLYPAVEGLIRTFTAKAQAFDQIVKVGRTHLMDAVPITLGQEIG 199
Query: 60 AYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRY------LTAKLLDFE-KPSE 112
++A+ + + + + K + +G A+ + R+ A+ + +E
Sbjct: 200 SWAAQLKTTLAAVKEMEKGLYNLAIGGTAVGTGLNAHPRFGELVAKYLAEETGLPFRVAE 259
Query: 113 NSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFL--TGSSIMP 170
N +++ D ++ + + L +I + + + + GSSIMP
Sbjct: 260 NRFAALAAHDELVNVMGAIRTLAGALMKIGNDVRWLASGPYAGIGEITIPANEPGSSIMP 319
Query: 171 QKKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFE 205
K NP + + + +F+
Sbjct: 320 GKVNPTQVEALTMVVVRVYGNDHTVAFAGSQGNFQ 354
>d1dofa_ a.127.1.1 (A:) Adenylosuccinate lyase {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 402
Score = 103 bits (257), Expect = 9e-25
Identities = 24/218 (11%), Positives = 74/218 (33%), Gaps = 6/218 (2%)
Query: 184 AALAGTTHHINRYLTAKLLDFEKPSENSLDSI-SDRDFVIEFISTCCLIVMHLSRISEEF 242
+ + + ++ + + + + + R+ S L+ R++ E
Sbjct: 184 VGTMASWGELGLEVRRRVAERLGLPHHVITTQVAPRESFAVLASALALMAAVFERLAVEI 243
Query: 243 IIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLA 302
P+ + GSS MP K NP E I + A +
Sbjct: 244 RELSRPEIGEV---VEGGGGSSAMPHKANPTASERIVSLARYVRALTHVAFENVALWHER 300
Query: 303 YNKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYET--AIKGFSISTDVADYL 360
+ +++ + + + + L ++ ++++ +E+ + E + ++ + +
Sbjct: 301 DLTNSANERVWIPEALLALDEILTSALRVLKNVYIDEERITENLQKALPYILTEFHMNRM 360
Query: 361 VKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKT 398
+K+G +++ + E K + + + +
Sbjct: 361 IKEGASRAEAYKKAKEVKALTFEYQKWPVERLIEDALS 398
Score = 61.6 bits (148), Expect = 6e-11
Identities = 34/178 (19%), Positives = 64/178 (35%), Gaps = 4/178 (2%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
+I T L R+ + + E + L ++ K+ M G TH Q A+PI+LG
Sbjct: 98 IIDTAWALLIRRALAAVKEKARAVGDQLASMARKYKTLEMVGRTHGQWAEPITLGFKFAN 157
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDSI-S 119
Y +L + + G+ + + + ++ + + + + +
Sbjct: 158 YYYELYIACRQLALAEEFIRAKIGGAVGTMASWGELGLEVRRRVAERLGLPHHVITTQVA 217
Query: 120 DRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDV 177
R+ S L+ R++ E P+ + GSS MP K NP
Sbjct: 218 PRESFAVLASALALMAAVFERLAVEIRELSRPEIGEV---VEGGGGSSAMPHKANPTA 272
>d1j3ua_ a.127.1.1 (A:) L-aspartate ammonia lyase {Bacillus sp.,
ym55-1 [TaxId: 1409]}
Length = 462
Score = 99.6 bits (247), Expect = 3e-23
Identities = 34/233 (14%), Positives = 90/233 (38%), Gaps = 18/233 (7%)
Query: 190 THHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQ 249
+ +L + +++ +D+ + D E S + ++++S+I+ + + +
Sbjct: 239 ISIVTEHLAKFSGHPLRSAQHLVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGP 298
Query: 250 FNFLT--LPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNKDL 307
L+ + + GSSIMP K NP + E++ +++ N + I + + N
Sbjct: 299 RAGLSEIVLPARQPGSSIMPGKVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVME 358
Query: 308 QEDKLPLFDTVDNIIMCLVA-SGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKGVP 366
L ++ + + + ++ NE+ M E K I T + ++
Sbjct: 359 PVLFFNLIQSISIMTNVFKSFTENCLKGIKANEERMKEYVEKSIGIITAINPHVG----- 413
Query: 367 FRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIID-ILCIENSIK 418
+E + + ++ ++L + ++++ ++ IL I
Sbjct: 414 ----YETAAKLAREAYLTGESIRELCIKY-----GVLTEEQLNEILNPYEMIH 457
Score = 93.8 bits (232), Expect = 3e-21
Identities = 48/242 (19%), Positives = 95/242 (39%), Gaps = 11/242 (4%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
T + ++ +IE M + +D+ A I G TH Q A PI LG A
Sbjct: 140 AFPTATHIAVLSLLNQLIETTKYMQQEFMKKADEFAGVIKMGRTHLQDAVPILLGQEFEA 199
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYL-------TAKLLDFEKPSEN 113
YA + RDI R+ + R + +G+ A+ + Y+ + +++
Sbjct: 200 YARVIARDIERIANTRNNLYDINMGATAVGTGLNADPEYISIVTEHLAKFSGHPLRSAQH 259
Query: 114 SLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLT--LPESFLTGSSIMPQ 171
+D+ + D E S + ++++S+I+ + + + L+ + + GSSIMP
Sbjct: 260 LVDATQNTDCYTEVSSALKVCMINMSKIANDLRLMASGPRAGLSEIVLPARQPGSSIMPG 319
Query: 172 KKNPDVKDLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLI 231
K NP + ++ + A + + ++ FE + + + I T
Sbjct: 320 KVNPVMPEVMNQVAFQVFGNDLTITSASEAGQFELNVMEPVLFFNLIQSI--SIMTNVFK 377
Query: 232 VM 233
Sbjct: 378 SF 379
>d1re5a_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Pseudomonas putida, strain KT2440 [TaxId: 303]}
Length = 448
Score = 94.7 bits (234), Expect = 1e-21
Identities = 38/314 (12%), Positives = 96/314 (30%), Gaps = 12/314 (3%)
Query: 123 FVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPESFLTGSSIMPQKKNPDVKDLRQ 182
+ + + R + + + + + + + +
Sbjct: 132 DTLSQQALKHADTPLVGRTWLQHATPVTLGMKLAGVLGALTRHRQRLQELRPRLLVLQFG 191
Query: 183 RAALAGTTHHINRYLTAKLLDFE-KPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEE 241
A+ + A+ L + K + + RD ++EF S L+ L + +
Sbjct: 192 GASGSLAALGSKAMPVAEALAEQLKLTLPEQPWHTQRDRLVEFASVLGLVAGSLGKFGRD 251
Query: 242 FIIFMNPQFN-FLTLPESFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQT 300
+ M + GSS MP K+NP ++ G R+ L + M +
Sbjct: 252 ISLLMQTEAGEVFEPSAPGKGGSSTMPHKRNPVGAAVLIGAATRVPGLLSTLFAAMPQEH 311
Query: 301 LAYNKDLQEDKLPLFDTVDNIIMCLVASGKLIEKATFNEQEMYET--AIKGFSISTDVAD 358
+ L D + L + + E + M +G ++ V+
Sbjct: 312 ERSLGLWHAEWETLPDICCLVSGALRQAQVIAEGMEVDAARMRRNLDLTQGLVLAEAVSI 371
Query: 359 YLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDILCIENSIK 418
L ++ + +H ++ + + + + + E + +++ +L + +
Sbjct: 372 VLAQR-LGRDRAHHLLEQCCQRAVAEQRHLRAVLGDEPQVSAELSGEELDRLLDPAHYL- 429
Query: 419 FKNHIGGTSPEQVK 432
G + V
Sbjct: 430 ------GQARVWVA 437
>d1jswa_ a.127.1.1 (A:) L-aspartate ammonia lyase {Escherichia coli
[TaxId: 562]}
Length = 459
Score = 89.9 bits (222), Expect = 5e-20
Identities = 31/186 (16%), Positives = 71/186 (38%), Gaps = 9/186 (4%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
T R+ + +++ + + + + + + G T Q A P++LG A
Sbjct: 147 AYPTGFRIAVYSSLIKLVDAINQLREGFERKAVEFQDILKMGRTQLQDAVPMTLGQEFRA 206
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEK-------PSEN 113
++ + + ++ + + + LG+ A+ + Y + + P+E+
Sbjct: 207 FSILLKEEVKNIQRTAELLLEVNLGATAIGTGLNTPKEYSPLAVKKLAEVTGFPCVPAED 266
Query: 114 SLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE--SFLTGSSIMPQ 171
+++ SD + + + +S+I + + + L GSSIMP
Sbjct: 267 LIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSSGPRAGLNEINLPELQAGSSIMPA 326
Query: 172 KKNPDV 177
K NP V
Sbjct: 327 KVNPVV 332
Score = 88.8 bits (219), Expect = 1e-19
Identities = 44/226 (19%), Positives = 78/226 (34%), Gaps = 13/226 (5%)
Query: 188 GTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFMN 247
+ + L P+E+ +++ SD + + + +S+I + + +
Sbjct: 244 EYSPLAVKKLAEVTGFPCVPAEDLIEATSDCGAYVMVHGALKRLAVKMSKICNDLRLLSS 303
Query: 248 PQFNFLTLPE--SFLTGSSIMPQKKNPDVLELIRGKTGRIYANLINILTTMKCQTLAYNK 305
L GSSIMP K NP V E++ ++ N + + L N
Sbjct: 304 GPRAGLNEINLPELQAGSSIMPAKVNPVVPEVVNQVCFKVIGNDTTVTMAAEAGQLQLNV 363
Query: 306 DLQEDKLPLFDTVDNII-MCLVASGKLIEKATFNEQEMYETAIKGFSISTDVADYLVKKG 364
+F++V + C K I T N++ S + YL
Sbjct: 364 MEPVIGQAMFESVHILTNACYNLLEKCINGITANKEVCEGYVYN----SIGIVTYL---- 415
Query: 365 VPFRTSHEIVGSIIKYCNEKHKTFKDLSLAELKTFHSYISDDIIDI 410
PF H + K C E K+ +++ L E DDI +
Sbjct: 416 NPFIGHHN-GDIVGKICAETGKSVREVVL-ERGLLTEAELDDIFSV 459
>d1q5na_ a.127.1.1 (A:) 3-carboxy-cis,cis-muconate cycloisomerase
(CMLE) {Acinetobacter calcoaceticus [TaxId: 471]}
Length = 444
Score = 89.8 bits (221), Expect = 5e-20
Identities = 38/218 (17%), Positives = 88/218 (40%), Gaps = 11/218 (5%)
Query: 218 RDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE-SFLTGSSIMPQKKNPDVLE 276
RD ++E S +I ++ +++ ++ + M + + P GSS MP K+NP
Sbjct: 229 RDRIVEIASVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAAA 288
Query: 277 LIRGKTGRIYANLINILTTMKCQTLAYNKDLQEDKLPLFDTVDNIIMCLVASGKLIEKAT 336
+ R+ A + +I +M + + L L + L + +++
Sbjct: 289 SVLAAANRVPALMSSIYQSMVQEHERSLGAWHAEWLSLPEIFQLTAGALERTLDVLKGME 348
Query: 337 FNEQEMYET--AIKGFSISTDVADYLVKKGVPFRTSHEIVGSIIKYCNEKHKTFKDLSLA 394
N + M++ G ++ V L + +H +V + K + K KD+ ++
Sbjct: 349 VNAENMHQNIECTHGLIMAEAVMMALAP-HMGRLNAHHVVEAACKTAVAEQKHLKDI-IS 406
Query: 395 ELKTFHSYISDDIIDILCIENSIKFKNHIGGTSPEQVK 432
++ Y + +D + K ++++ G +Q+
Sbjct: 407 QVDEVKQYFNPSQLDEI-----FKPESYL-GNIQDQID 438
Score = 51.6 bits (122), Expect = 1e-07
Identities = 46/268 (17%), Positives = 100/268 (37%), Gaps = 6/268 (2%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSDKHAKTIMPGFTHFQIAQPISLGHYLLA 60
++ T L R + I+ + + + + +M G T Q A PI+LGH L
Sbjct: 108 ILDTACILQCRDALAIVQNQVQQCYETALSQAQTYRHQVMMGRTWLQQALPITLGHKLAR 167
Query: 61 YASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLLDFEKPSENSLDS-IS 119
+AS F+RD++R+ + RV ++ LG A + + + + + + +
Sbjct: 168 WASAFKRDLDRINAIKARVLVAQLGGAVGSLASLQDQGSIVVEAYAKQLKLGQTACTWHG 227
Query: 120 DRDFVIEFISTCCLIVMHLSRISEEFIIFMNPQFNFLTLPE-SFLTGSSIMPQKKNPDVK 178
+RD ++E S +I ++ +++ ++ + M + + P GSS MP K+NP
Sbjct: 228 ERDRIVEIASVLGIITGNVGKMARDWSLMMQTEIAEVFEPTAKGRGGSSTMPHKRNPVAA 287
Query: 179 DLRQRAALAGTTHHINRYLTAKLLDFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRI 238
AA + Y + + ++ + E + +
Sbjct: 288 ASVLAAANRVPALMSSIYQSMVQEHE----RSLGAWHAEWLSLPEIFQLTAGALERTLDV 343
Query: 239 SEEFIIFMNPQFNFLTLPESFLTGSSIM 266
+ + + + ++M
Sbjct: 344 LKGMEVNAENMHQNIECTHGLIMAEAVM 371
>d1jhda2 c.26.1.5 (A:174-396) ATP sulfurylase catalytic domain
{Sulfur-oxidizing endosymbiont of Riftia pachyptila
[TaxId: 35843]}
Length = 223
Score = 31.8 bits (71), Expect = 0.13
Identities = 14/104 (13%), Positives = 32/104 (30%), Gaps = 8/104 (7%)
Query: 46 FQIAQPISLGHYLLAYASMFQRDINRLIDCRKRVNISPLGSAALAGTTHHINRYLTAKLL 105
FQ P+ H L +M D + ++ + L G R + +
Sbjct: 25 FQTRNPMHRAHEELCRMAMESLDADGVV-------VHMLLGKLKKGDIPAPVRDAAIRTM 77
Query: 106 DFEKPSENSLDSISDRDFVIEFISTCCLIVMHLSRISEEFIIFM 149
N++ ++ F + + ++ R + F+
Sbjct: 78 AEVYFPPNTV-MVTGYGFDMLYAGPREAVLHAYFRQNMGATHFI 120
>d1outa_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Trout (Oncorhynchus
mykiss) [TaxId: 8022]}
Length = 142
Score = 25.8 bits (56), Expect = 6.5
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 12/58 (20%)
Query: 11 RKHIDIIIELLLTMIKHLTD-------LSDKHAKTIMPGFTHFQIAQPISLGHYLLAY 61
+KH II+ + + + D LSD HA + +F+I L H +L
Sbjct: 57 KKHGGIIMGAIGKAVGLMDDLVGGMSALSDLHAFKLRVDPGNFKI-----LSHNILVT 109
>d1wmua_ a.1.1.2 (A:) Hemoglobin, alpha-chain {Aldabra giant
tortoise (Geochelone gigantea) [TaxId: 167804]}
Length = 141
Score = 25.4 bits (55), Expect = 8.3
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 12/65 (18%)
Query: 11 RKHIDIIIELLLTMIKHL-------TDLSDKHAKTIMPGFTHFQIAQPISLGHYLLAYAS 63
R H ++ L +KH+ ++LS+ HA + +F++ L H
Sbjct: 56 RHHGKKVVGALGDAVKHIDNLSATLSELSNLHAYNLRVDPVNFKL-----LSHCFQVVLG 110
Query: 64 MFQRD 68
Sbjct: 111 AHLGR 115
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 26.4 bits (57), Expect = 8.4
Identities = 10/47 (21%), Positives = 21/47 (44%), Gaps = 3/47 (6%)
Query: 1 MIVTDLRLYTRKHIDIIIELLLTMIKHLTDLSD---KHAKTIMPGFT 44
+ R+YT H+D I + L+ + + L ++ ++ FT
Sbjct: 413 RLTIARRVYTNDHMDYIADALIGLKEKFATLKGLEFEYEPPVLRHFT 459
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.324 0.139 0.399
Gapped
Lambda K H
0.267 0.0499 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,696,071
Number of extensions: 79928
Number of successful extensions: 259
Number of sequences better than 10.0: 1
Number of HSP's gapped: 226
Number of HSP's successfully gapped: 34
Length of query: 455
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 367
Effective length of database: 1,199,356
Effective search space: 440163652
Effective search space used: 440163652
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 54 (25.1 bits)