BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3418
         (119 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3LCR|A Chain A, Thioesterase From Tautomycetin Biosynthhetic Pathway
 pdb|3LCR|B Chain B, Thioesterase From Tautomycetin Biosynthhetic Pathway
          Length = 319

 Score = 29.3 bits (64), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 38  LTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPP 76
           L P ++   P ++ T P   +   ++ D+GR V +++PP
Sbjct: 80  LGPQLILVCPTVMTTGPQVYSRLAEELDAGRRVSALVPP 118


>pdb|2DDZ|A Chain A, Protein Of Unknown Function From Pyrococcus Horikoshi
 pdb|2DDZ|B Chain B, Protein Of Unknown Function From Pyrococcus Horikoshi
 pdb|2DDZ|C Chain C, Protein Of Unknown Function From Pyrococcus Horikoshi
 pdb|2DDZ|D Chain D, Protein Of Unknown Function From Pyrococcus Horikoshi
 pdb|2DDZ|E Chain E, Protein Of Unknown Function From Pyrococcus Horikoshi
 pdb|2DDZ|F Chain F, Protein Of Unknown Function From Pyrococcus Horikoshi
          Length = 190

 Score = 27.7 bits (60), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 11/69 (15%)

Query: 43  VATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVN--DLMDRTYKAMSE 100
           +AT+ P+   I    N KT         + + P +   GL +  ++  + M+R+ KA+ E
Sbjct: 124 IATVSPVSIKIHIGLNVKT---------VGVPPGVDAIGLEELGIDPTEFMERSAKALVE 174

Query: 101 EYEKITKEN 109
           E EK+ K++
Sbjct: 175 EIEKVRKDS 183


>pdb|4H7N|A Chain A, The Structure Of Putative Aldehyde Dehydrogenase Puta From
           Anabaena Variabilis.
 pdb|4H7N|B Chain B, The Structure Of Putative Aldehyde Dehydrogenase Puta From
           Anabaena Variabilis.
 pdb|4H7N|C Chain C, The Structure Of Putative Aldehyde Dehydrogenase Puta From
           Anabaena Variabilis.
 pdb|4H7N|D Chain D, The Structure Of Putative Aldehyde Dehydrogenase Puta From
           Anabaena Variabilis
          Length = 474

 Score = 25.4 bits (54), Expect = 8.1,   Method: Composition-based stats.
 Identities = 11/28 (39%), Positives = 16/28 (57%)

Query: 27  ASCKIVIEASPLTPHVVATLPPILCTIP 54
           A C +V++ S + P  VA L   L T+P
Sbjct: 153 AGCAVVVKPSEIAPRFVAPLLXALNTVP 180


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.311    0.131    0.376 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,719,086
Number of Sequences: 62578
Number of extensions: 138497
Number of successful extensions: 248
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 5
length of query: 119
length of database: 14,973,337
effective HSP length: 81
effective length of query: 38
effective length of database: 9,904,519
effective search space: 376371722
effective search space used: 376371722
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 45 (21.9 bits)