Query psy3418
Match_columns 119
No_of_seqs 113 out of 989
Neff 5.6
Searched_HMMs 46136
Date Sat Aug 17 00:30:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3418.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3418hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2848|consensus 99.8 1.7E-19 3.8E-24 143.6 8.6 92 18-115 173-268 (276)
2 PRK15018 1-acyl-sn-glycerol-3- 99.6 1.8E-15 3.9E-20 118.9 5.2 86 19-112 150-239 (245)
3 PTZ00261 acyltransferase; Prov 99.3 2.7E-12 5.9E-17 106.4 3.6 83 18-106 225-318 (355)
4 PLN02901 1-acyl-sn-glycerol-3- 99.1 6.7E-11 1.5E-15 90.4 5.4 76 18-104 132-212 (214)
5 cd07991 LPLAT_LPCAT1-like Lyso 98.8 2.4E-08 5.2E-13 75.9 7.6 66 39-105 122-201 (211)
6 cd07986 LPLAT_ACT14924-like Ly 98.7 2E-09 4.3E-14 81.9 -1.3 66 26-97 126-208 (210)
7 cd07987 LPLAT_MGAT-like Lysoph 98.7 2.9E-08 6.3E-13 75.0 4.4 74 26-105 118-210 (212)
8 PRK08043 bifunctional acyl-[ac 98.6 6.3E-08 1.4E-12 84.4 5.9 83 19-107 108-202 (718)
9 cd07992 LPLAT_AAK14816-like Ly 98.6 6.3E-08 1.4E-12 73.0 4.3 77 19-102 121-202 (203)
10 PLN02783 diacylglycerol O-acyl 98.5 1.5E-07 3.2E-12 76.8 5.3 80 26-111 199-307 (315)
11 cd07985 LPLAT_GPAT Lysophospho 98.5 2.8E-07 6E-12 73.0 5.8 80 19-105 126-235 (235)
12 cd07983 LPLAT_DUF374-like Lyso 98.4 1.7E-07 3.7E-12 69.4 3.3 72 19-97 108-186 (189)
13 cd07988 LPLAT_ABO13168-like Ly 98.2 1.1E-06 2.3E-11 64.9 2.4 53 19-91 106-159 (163)
14 PRK08633 2-acyl-glycerophospho 98.1 4.7E-06 1E-10 74.9 5.7 72 19-100 522-605 (1146)
15 PRK06814 acylglycerophosphoeth 98.1 4.5E-06 9.8E-11 75.7 5.4 78 19-102 534-623 (1140)
16 COG0204 PlsC 1-acyl-sn-glycero 98.0 1.7E-05 3.7E-10 59.9 5.5 78 19-106 149-231 (255)
17 PLN02833 glycerol acyltransfer 97.9 2.7E-05 5.8E-10 65.2 6.3 77 19-103 248-338 (376)
18 TIGR03703 plsB glycerol-3-phos 97.9 4.8E-06 1E-10 75.5 1.4 77 18-95 381-485 (799)
19 PRK03355 glycerol-3-phosphate 97.7 2.5E-05 5.3E-10 70.8 2.5 65 18-82 356-449 (783)
20 PLN02177 glycerol-3-phosphate 97.7 5.6E-05 1.2E-09 65.3 4.5 62 42-103 393-468 (497)
21 cd06551 LPLAT Lysophospholipid 97.6 8.2E-05 1.8E-09 54.0 4.6 63 26-102 124-186 (187)
22 cd07989 LPLAT_AGPAT-like Lysop 97.6 5.6E-05 1.2E-09 54.9 3.6 62 26-93 119-182 (184)
23 cd07984 LPLAT_LABLAT-like Lyso 97.6 5.5E-05 1.2E-09 55.4 3.5 62 26-106 120-181 (192)
24 cd07993 LPLAT_DHAPAT-like Lyso 97.5 4.6E-06 9.9E-11 63.2 -3.6 63 19-81 112-202 (205)
25 PRK04974 glycerol-3-phosphate 97.4 7.1E-05 1.5E-09 68.2 2.2 74 18-92 391-492 (818)
26 COG2121 Uncharacterized protei 96.1 0.012 2.6E-07 46.3 5.2 42 38-80 142-188 (214)
27 PF03982 DAGAT: Diacylglycerol 95.2 0.055 1.2E-06 44.1 6.0 46 65-110 239-287 (297)
28 PRK08419 lipid A biosynthesis 94.9 0.036 7.8E-07 44.1 3.9 63 26-105 213-277 (298)
29 PLN02499 glycerol-3-phosphate 94.9 0.073 1.6E-06 46.5 6.0 78 19-103 363-455 (498)
30 KOG2847|consensus 94.0 0.045 9.8E-07 44.4 2.7 48 29-81 176-226 (286)
31 PRK07920 lipid A biosynthesis 93.3 0.1 2.2E-06 41.7 3.7 60 26-105 211-270 (298)
32 PLN02588 glycerol-3-phosphate 92.7 0.24 5.2E-06 43.6 5.3 62 43-104 421-501 (525)
33 PRK06553 lipid A biosynthesis 92.3 0.18 3.8E-06 40.6 3.8 63 26-105 232-296 (308)
34 PRK08706 lipid A biosynthesis 91.5 0.25 5.4E-06 39.2 3.7 61 26-105 207-267 (289)
35 TIGR02207 lipid_A_htrB lipid A 89.7 0.39 8.4E-06 38.3 3.4 62 26-105 219-280 (303)
36 PRK06946 lipid A biosynthesis 89.5 0.46 9.9E-06 37.9 3.6 62 26-105 210-271 (293)
37 PRK06628 lipid A biosynthesis 88.5 0.65 1.4E-05 37.0 3.9 63 26-105 213-277 (290)
38 PRK11915 glycerol-3-phosphate 88.0 0.36 7.8E-06 43.3 2.3 64 18-82 204-296 (621)
39 TIGR00530 AGP_acyltrn 1-acyl-s 87.9 0.15 3.2E-06 34.6 -0.1 27 19-51 100-130 (130)
40 PRK08733 lipid A biosynthesis 87.1 0.73 1.6E-05 37.0 3.4 60 26-105 224-283 (306)
41 PF03279 Lip_A_acyltrans: Bact 86.9 1.4 3E-05 34.7 4.9 63 26-106 221-283 (295)
42 PRK05646 lipid A biosynthesis 86.7 0.76 1.6E-05 36.9 3.3 60 26-104 223-283 (310)
43 PRK08905 lipid A biosynthesis 86.3 0.85 1.9E-05 36.3 3.4 61 26-105 201-261 (289)
44 PRK08943 lipid A biosynthesis 86.2 0.85 1.8E-05 36.7 3.4 62 26-105 231-292 (314)
45 PRK06860 lipid A biosynthesis 86.1 0.8 1.7E-05 36.7 3.2 64 23-105 222-286 (309)
46 PTZ00374 dihydroxyacetone phos 86.0 0.1 2.2E-06 49.2 -2.3 63 19-82 720-813 (1108)
47 PRK14014 putative acyltransfer 85.3 2 4.3E-05 34.9 5.1 47 26-74 206-253 (301)
48 TIGR02208 lipid_A_msbB lipid A 83.7 1.5 3.2E-05 35.1 3.7 62 26-105 222-283 (305)
49 KOG0831|consensus 83.1 1.4 3E-05 36.9 3.3 41 67-108 278-318 (334)
50 PRK08025 lipid A biosynthesis 78.7 2.6 5.6E-05 33.7 3.5 61 25-104 222-282 (305)
51 PRK05906 lipid A biosynthesis 78.4 2.5 5.3E-05 36.5 3.4 62 26-105 238-301 (454)
52 smart00563 PlsC Phosphate acyl 78.2 0.76 1.6E-05 30.0 0.2 21 26-52 97-117 (118)
53 PRK08734 lipid A biosynthesis 75.9 3.4 7.3E-05 33.2 3.4 62 26-105 213-274 (305)
54 PF01553 Acyltransferase: Acyl 75.8 0.16 3.4E-06 34.5 -3.7 20 26-51 113-132 (132)
55 COG1560 HtrB Lauroyl/myristoyl 69.5 5.4 0.00012 32.8 3.2 61 26-104 224-284 (308)
56 PRK05645 lipid A biosynthesis 58.9 23 0.0005 28.0 5.0 62 26-105 212-273 (295)
57 PRK13446 atpC F0F1 ATP synthas 56.2 55 0.0012 23.4 6.1 81 14-100 22-107 (136)
58 PRK02289 4-oxalocrotonate taut 52.5 44 0.00095 20.3 4.5 24 81-104 11-34 (60)
59 PRK15174 Vi polysaccharide exp 52.4 13 0.00029 32.9 2.9 63 26-104 574-636 (656)
60 CHL00063 atpE ATP synthase CF1 52.2 85 0.0018 22.4 6.6 81 14-100 20-105 (134)
61 PF08979 DUF1894: Domain of un 47.3 38 0.00082 23.3 3.8 40 26-73 36-77 (89)
62 PF01922 SRP19: SRP19 protein; 45.6 74 0.0016 21.6 5.2 54 39-100 39-93 (95)
63 PRK13452 atpC F0F1 ATP synthas 44.6 1.2E+02 0.0026 22.1 7.0 81 14-100 23-108 (145)
64 PRK13443 atpC F0F1 ATP synthas 43.4 1.3E+02 0.0027 21.9 6.4 82 14-101 22-108 (136)
65 TIGR00942 2a6301s05 Monovalent 40.6 48 0.001 24.0 3.8 42 63-104 97-141 (144)
66 COG4033 Uncharacterized protei 36.1 39 0.00084 23.7 2.6 38 19-59 26-66 (102)
67 TIGR00013 taut 4-oxalocrotonat 35.0 1E+02 0.0022 18.3 4.5 23 80-102 10-32 (63)
68 PRK12596 putative monovalent c 34.8 57 0.0012 24.4 3.5 45 63-107 113-160 (171)
69 PRK00571 atpC F0F1 ATP synthas 33.6 1.7E+02 0.0037 20.6 6.3 81 14-100 21-107 (135)
70 PRK00539 atpC F0F1 ATP synthas 32.8 1.9E+02 0.004 20.7 6.5 81 14-100 21-107 (133)
71 PRK13683 hypothetical protein; 32.3 21 0.00045 24.5 0.7 25 76-100 14-38 (87)
72 PRK13448 atpC F0F1 ATP synthas 31.5 2E+02 0.0043 20.6 6.8 81 14-100 21-106 (135)
73 PRK12654 putative monovalent c 30.9 75 0.0016 23.7 3.5 40 64-104 59-106 (151)
74 TIGR03544 DivI1A_domain DivIVA 29.3 53 0.0011 18.1 1.9 18 80-97 16-33 (34)
75 TIGR01216 ATP_synt_epsi ATP sy 28.7 2.1E+02 0.0045 20.1 6.3 36 65-100 70-105 (130)
76 PRK12651 putative monovalent c 28.7 75 0.0016 23.3 3.2 41 63-103 111-154 (158)
77 PRK06228 F0F1 ATP synthase sub 28.5 2.2E+02 0.0049 20.4 6.6 73 14-97 21-99 (131)
78 PF14727 PHTB1_N: PTHB1 N-term 28.1 1.7E+02 0.0036 25.2 5.6 63 40-104 323-398 (418)
79 KOG1359|consensus 27.8 51 0.0011 28.1 2.4 55 40-94 341-406 (417)
80 PRK13444 atpC F0F1 ATP synthas 27.1 2.3E+02 0.005 20.0 5.8 80 14-99 23-107 (127)
81 PRK14735 atpC F0F1 ATP synthas 26.9 2.4E+02 0.0053 20.2 6.6 81 14-100 20-105 (139)
82 PRK02220 4-oxalocrotonate taut 25.4 1.5E+02 0.0033 17.4 4.4 24 80-103 10-33 (61)
83 PRK13450 atpC F0F1 ATP synthas 25.1 2.5E+02 0.0055 19.9 6.6 79 14-98 21-105 (132)
84 PF06831 H2TH: Formamidopyrimi 25.0 76 0.0016 21.2 2.5 34 71-104 51-84 (92)
85 cd02011 TPP_PK Thiamine pyroph 23.4 70 0.0015 25.3 2.3 66 45-110 115-185 (227)
86 COG0355 AtpC F0F1-type ATP syn 22.9 3E+02 0.0065 19.9 7.9 75 14-101 21-109 (135)
87 PLN02955 8-amino-7-oxononanoat 22.7 78 0.0017 27.7 2.7 57 42-98 392-459 (476)
88 TIGR02744 TrbI_Ftype type-F co 22.4 1.4E+02 0.003 21.3 3.5 32 79-110 52-83 (112)
89 PRK13717 conjugal transfer pro 22.2 1.4E+02 0.0031 21.8 3.6 32 79-110 65-96 (128)
90 COG1029 FwdB Formylmethanofura 22.2 87 0.0019 27.1 2.8 48 45-96 379-427 (429)
91 PRK02048 4-hydroxy-3-methylbut 21.6 2.5E+02 0.0055 25.6 5.7 64 19-95 539-605 (611)
92 PRK00745 4-oxalocrotonate taut 21.1 1.6E+02 0.0035 17.4 3.2 23 81-103 11-33 (62)
93 PF13292 DXP_synthase_N: 1-deo 21.0 68 0.0015 26.2 1.9 30 73-102 4-33 (270)
94 PRK06733 hypothetical protein; 21.0 1.5E+02 0.0032 22.1 3.5 77 15-100 74-150 (151)
95 cd00491 4Oxalocrotonate_Tautom 21.0 1.7E+02 0.0037 16.8 3.3 23 81-103 10-32 (58)
96 COG1156 NtpB Archaeal/vacuolar 20.8 1.5E+02 0.0032 26.1 3.9 62 41-102 301-382 (463)
97 cd00591 HU_IHF Integration hos 20.7 1.5E+02 0.0033 18.7 3.2 24 81-104 14-37 (87)
98 PF12544 LAM_C: Lysine-2,3-ami 20.3 40 0.00087 24.6 0.4 17 6-22 24-40 (127)
No 1
>KOG2848|consensus
Probab=99.80 E-value=1.7e-19 Score=143.61 Aligned_cols=92 Identities=33% Similarity=0.550 Sum_probs=86.6
Q ss_pred EecCCCcc----ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHH
Q psy3418 18 VRSKNASV----PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDR 93 (119)
Q Consensus 18 ~~~~~~~~----~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~ 93 (119)
.||++|++ ||.|-|| .|+|+|||||+++++.++++.+..+|..|.+.|+|||||+|+|+|.+|+++|.++
T Consensus 173 TRn~~g~llPFKKGAF~lA------vqaqVPIVPvv~ssy~~f~~~~~k~f~sG~v~V~vL~pI~TeglT~ddv~~L~~~ 246 (276)
T KOG2848|consen 173 TRNKEGRLLPFKKGAFHLA------VQAQVPIVPVVFSSYGDFYSTKEKVFNSGNVIVRVLPPIPTEGLTKDDVDVLSDE 246 (276)
T ss_pred ccCCCCcccccccceeeee------hhcCCCEEEEEEecccccccCccceeecceEEEEEcCCCCccCCCcccHHHHHHH
Confidence 38999999 9999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcccCCCCCCC
Q psy3418 94 TYKAMSEEYEKITKENTPPGED 115 (119)
Q Consensus 94 vr~~m~~~L~~l~~~~~~~~~~ 115 (119)
||.+|.+.+.+++.+++..+.-
T Consensus 247 ~R~~M~~~~~ei~~~~~~~~~~ 268 (276)
T KOG2848|consen 247 CRSAMLETFKEISAEAAVRNAT 268 (276)
T ss_pred HHHHHHHHHHHhchhhhhCCCc
Confidence 9999999999999987766554
No 2
>PRK15018 1-acyl-sn-glycerol-3-phosphate acyltransferase; Provisional
Probab=99.58 E-value=1.8e-15 Score=118.90 Aligned_cols=86 Identities=21% Similarity=0.334 Sum_probs=76.2
Q ss_pred ecCCCcc----ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHH
Q psy3418 19 RSKNASV----PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRT 94 (119)
Q Consensus 19 ~~~~~~~----~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~v 94 (119)
||++|.+ +|.+++| .++|+||+||+++|+++.++. +.++||+++|+||+||++++++.+|.++|.+++
T Consensus 150 Rs~~g~l~~Fk~Ga~~lA------~~~~~PIvPv~i~g~~~~~~~--~~~~~g~i~v~~~~PI~~~~~~~~~~~~l~~~v 221 (245)
T PRK15018 150 RSRGRGLLPFKTGAFHAA------IAAGVPIIPVCVSTTSNKINL--NRLHNGLVIVEMLPPIDVSQYGKDQVRELAAHC 221 (245)
T ss_pred CCCCCCCCCccHHHHHHH------HHcCCCEEEEEEECccccccc--CCccCeeEEEEEcCCCcCCCCChhhHHHHHHHH
Confidence 8999987 7888998 679999999999999887764 356899999999999999999988999999999
Q ss_pred HHHHHHHHHhhcccCCCC
Q psy3418 95 YKAMSEEYEKITKENTPP 112 (119)
Q Consensus 95 r~~m~~~L~~l~~~~~~~ 112 (119)
++.|++.+.++..+....
T Consensus 222 ~~~i~~~~~~l~~~~~~~ 239 (245)
T PRK15018 222 RSIMEQKIAELDKEVAER 239 (245)
T ss_pred HHHHHHHHHHHHHHHHhh
Confidence 999999999998876443
No 3
>PTZ00261 acyltransferase; Provisional
Probab=99.26 E-value=2.7e-12 Score=106.35 Aligned_cols=83 Identities=10% Similarity=-0.017 Sum_probs=64.0
Q ss_pred EecCCCc-c----ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCc-ccceeEEEecC-cccCCCCChhh----
Q psy3418 18 VRSKNAS-V----PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKF-DSGRNVISILP-PIPTEGLTKDN---- 86 (119)
Q Consensus 18 ~~~~~~~-~----~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~-~PG~V~V~Ilp-PI~t~glt~ed---- 86 (119)
.||+++. + +|+|+++ .++|+||+|+++.|++++||.+..++ +||+++|+|++ ||++++++.++
T Consensus 225 TRS~~gg~L~pFK~GaF~LA------ieagvPIVPvai~Gs~~~wP~g~~l~~~pg~I~V~iG~~PI~~~~~~~~eL~~~ 298 (355)
T PTZ00261 225 AINKHPQVLQTFRYGTFATI------IKHRMEVYYMVSVGSEKTWPWWMMIGGLPADMHIRIGAYPIDYDRDSSKDVAVG 298 (355)
T ss_pred CCcCCCCcCCCCcHHHHHHH------HHcCCCEEEEEEeChhhcCCCCCccCCCCceEEEEECCCCCCCCCCCHHHHHHH
Confidence 4888754 5 6889999 56899999999999998888765444 69999999999 99998876654
Q ss_pred HHHHHHHHHHHHHHHHHhhc
Q psy3418 87 VNDLMDRTYKAMSEEYEKIT 106 (119)
Q Consensus 87 i~~L~e~vr~~m~~~L~~l~ 106 (119)
..++++++++.|.+++.++.
T Consensus 299 lr~lmqe~~~~I~~el~~~~ 318 (355)
T PTZ00261 299 LQQRMQKVRDEIAAEVAAAE 318 (355)
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 35566666666666665543
No 4
>PLN02901 1-acyl-sn-glycerol-3-phosphate acyltransferase
Probab=99.14 E-value=6.7e-11 Score=90.43 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=63.6
Q ss_pred EecCCCcc----ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCC-CCcccceeEEEecCcccCCCCChhhHHHHHH
Q psy3418 18 VRSKNASV----PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKT-KKFDSGRNVISILPPIPTEGLTKDNVNDLMD 92 (119)
Q Consensus 18 ~~~~~~~~----~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~-~~~~PG~V~V~IlpPI~t~glt~edi~~L~e 92 (119)
.|++++.+ +|++++| .++++||+||++.|+++.++.+. +.+++|+++|.+++||++. +.++|.+
T Consensus 132 tr~~~~~~~~f~~G~~~lA------~~~~~pIvPv~i~g~~~~~~~~~~~~~~~~~i~v~~~~pi~~~-----~~~~l~~ 200 (214)
T PLN02901 132 TRSKDGKLAAFKKGAFSVA------AKTGVPVVPITLVGTGKIMPNGKEGILNPGSVKVVIHPPIEGS-----DADELCN 200 (214)
T ss_pred CCCCCCcccCchhhHHHHH------HHcCCCEEEEEEecchhhCcCCCcccccCCeEEEEECCCcCCC-----CHHHHHH
Confidence 36777766 6778877 57899999999999998888764 3468999999999999874 5678999
Q ss_pred HHHHHHHHHHHh
Q psy3418 93 RTYKAMSEEYEK 104 (119)
Q Consensus 93 ~vr~~m~~~L~~ 104 (119)
+++++|++.+.+
T Consensus 201 ~~~~~i~~~~~~ 212 (214)
T PLN02901 201 EARKVIAESLVQ 212 (214)
T ss_pred HHHHHHHHHhhh
Confidence 999999998765
No 5
>cd07991 LPLAT_LPCAT1-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LPCAT1-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lysophosphatidylcholine acyltransferase 1 (LPCAT-1), glycerol-3-phosphate acyltransferase 3 (GPAT3), and similar sequences.
Probab=98.79 E-value=2.4e-08 Score=75.89 Aligned_cols=66 Identities=11% Similarity=0.084 Sum_probs=50.1
Q ss_pred CCCCCcEEeEEEcCCccccc---CCCCC-----------cccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHh
Q psy3418 39 TPHVVATLPPILCTIPYFTN---DKTKK-----------FDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEK 104 (119)
Q Consensus 39 ~ka~vPIVPVvI~gt~~i~p---~k~~~-----------~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~ 104 (119)
.++++||+||++.++...++ ..... ..+++++|.+|+||+++ ...++.++|.+++++.|.+.|..
T Consensus 122 f~~~~pI~Pv~i~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~v~~l~pi~~~-~~~~~~~~l~~~v~~~i~~~l~~ 200 (211)
T cd07991 122 FEPGVPVQPVAIRYPNKFVDAFWNSSGYSSLMYLFRLLTQPANVLEVEFLPVYTPS-EEGEDPKEFANRVRLIMANKLGL 200 (211)
T ss_pred ccCCCeeEEEEEEecCccCCcccCCCCccHHHHHHHHhCCcceEEEEEECCCcccc-cCCCCHHHHHHHHHHHHHHhcCC
Confidence 35799999999998754322 21111 14689999999999986 55578889999999999998754
Q ss_pred h
Q psy3418 105 I 105 (119)
Q Consensus 105 l 105 (119)
.
T Consensus 201 ~ 201 (211)
T cd07991 201 P 201 (211)
T ss_pred C
Confidence 3
No 6
>cd07986 LPLAT_ACT14924-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ACT14924. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Pectobacterium carotovorum subsp. carotovorum PC1 locus ACT14924 putative acyltransferase, and similar proteins.
Probab=98.68 E-value=2e-09 Score=81.86 Aligned_cols=66 Identities=15% Similarity=0.153 Sum_probs=50.6
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCccccc----------------CCCCCcccceeEEEecCcccCCCCCh-hhHH
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTN----------------DKTKKFDSGRNVISILPPIPTEGLTK-DNVN 88 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p----------------~k~~~~~PG~V~V~IlpPI~t~glt~-edi~ 88 (119)
+|.++|+ .++++|||||++.|++..+. .+.+..++++++|+||+||++++++. ++.+
T Consensus 126 ~G~~~lA------~~~~~pIvPv~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~g~pI~~~~~~~~~~~~ 199 (210)
T cd07986 126 PFVARLA------RKAKAPVVPVYFSGRNSRLFYLAGLIHPTLRTLLLPRELLNKRGKTIRIRVGRPIPPEELARFEDAE 199 (210)
T ss_pred HHHHHHH------HHHCCCEEEEEEeeeCcHHHHHHHccCHHHHHHHHHHHHHHhCCCEEEEEeCCcCCHHHHhcCCCHH
Confidence 6888888 67999999999988753211 11112268999999999999998863 5788
Q ss_pred HHHHHHHHH
Q psy3418 89 DLMDRTYKA 97 (119)
Q Consensus 89 ~L~e~vr~~ 97 (119)
+|.+.+|+.
T Consensus 200 ~l~~~~~~~ 208 (210)
T cd07986 200 ELADFLRLH 208 (210)
T ss_pred HHHHHHHHh
Confidence 999999874
No 7
>cd07987 LPLAT_MGAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: MGAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this suubgroup are such LPLATs as 2-acylglycerol O-acyltransferase (MGAT), and similar proteins.
Probab=98.65 E-value=2.9e-08 Score=74.99 Aligned_cols=74 Identities=12% Similarity=-0.002 Sum_probs=57.9
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCC--------------CcccceeEEEecCcccCCC-----CChhh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTK--------------KFDSGRNVISILPPIPTEG-----LTKDN 86 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~--------------~~~PG~V~V~IlpPI~t~g-----lt~ed 86 (119)
+|-++|| .++++|||||++.|+...++.... ..+++++++.|++||++.. -+.++
T Consensus 118 ~G~~~lA------~~~~~pIvPv~~~G~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~i~v~~G~Pi~~~~~~~~~~~~~~ 191 (212)
T cd07987 118 KGFARLA------LRAGAPIVPVFTFGEEELFRVLGDPDGPVGKRLFRLLPLPRRLPLYPVFGEPIVVPRPPIPDPPDED 191 (212)
T ss_pred cCHHHHH------HHcCCCeEeEEEeCcHHHHhhhccCCCCceeehhceeccCCCCcceEEeCCCccCCCCCCCCcCHHH
Confidence 5667888 579999999999999888874321 1155799999999999765 46677
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q psy3418 87 VNDLMDRTYKAMSEEYEKI 105 (119)
Q Consensus 87 i~~L~e~vr~~m~~~L~~l 105 (119)
++++.+++.+.+++.+++.
T Consensus 192 ~~~~~~~~~~~l~~l~~~~ 210 (212)
T cd07987 192 VEELHQKYIAALRELIEKH 210 (212)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 8888888888888887664
No 8
>PRK08043 bifunctional acyl-[acyl carrier protein] synthetase/2-acylglycerophosphoethanolamine acyltransferase; Validated
Probab=98.61 E-value=6.3e-08 Score=84.37 Aligned_cols=83 Identities=13% Similarity=0.093 Sum_probs=64.5
Q ss_pred ecCCCcc----ccceeEeeccCCCCCCCCcEEeEEEcCCccc-ccCCC---CCcccceeEEEecCc----ccCCCCChhh
Q psy3418 19 RSKNASV----PASCKIVIEASPLTPHVVATLPPILCTIPYF-TNDKT---KKFDSGRNVISILPP----IPTEGLTKDN 86 (119)
Q Consensus 19 ~~~~~~~----~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i-~p~k~---~~~~PG~V~V~IlpP----I~t~glt~ed 86 (119)
||+++.+ +|.++|+ .++|+|||||+|.|+... ++... ..+.++++.+.||+| |++++++.++
T Consensus 108 r~~~~~~~~~k~G~~~~a------~~~~~pivPv~i~g~~~~~~~~~~~~~~~~~~~~i~~~~~~p~~~~~~~~~~~~~~ 181 (718)
T PRK08043 108 ITVTGSLMKIYDGAGFVA------AKSGATVIPVRIEGAELTHFSRLKGLVKRRLFPQITLHILPPTQLPMPDAPRARDR 181 (718)
T ss_pred cCCCCCccCcchHHHHHH------HHCCCCEEEEEEECCccCcccccCCccccccCCceEEEecCcccCCCCCCccHHHH
Confidence 7888876 7888888 578999999999988542 22111 123456899999998 6778888889
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q psy3418 87 VNDLMDRTYKAMSEEYEKITK 107 (119)
Q Consensus 87 i~~L~e~vr~~m~~~L~~l~~ 107 (119)
.+.|.+.+++.|.+.+.....
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~ 202 (718)
T PRK08043 182 RKLAGEMLHQIMMEARMAVRP 202 (718)
T ss_pred HHHHHHHHHHHHHHHHhhcCC
Confidence 999999999999999877543
No 9
>cd07992 LPLAT_AAK14816-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown AAK14816-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized glycerol-3-phosphate acyltransferases such as the Plasmodium falciparum locus AAK14816 putative acyltransferase, and similar proteins.
Probab=98.58 E-value=6.3e-08 Score=72.95 Aligned_cols=77 Identities=13% Similarity=0.168 Sum_probs=54.0
Q ss_pred ecCCCcc----ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCCh-hhHHHHHHH
Q psy3418 19 RSKNASV----PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTK-DNVNDLMDR 93 (119)
Q Consensus 19 ~~~~~~~----~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~-edi~~L~e~ 93 (119)
|+.++.+ +|.++||.+++.+.++++||+||++++.+. ...+++++|.|++||++.++.. |+..+-.+.
T Consensus 121 r~~~~~~~~fk~G~~~lA~~a~~~~~~~vpIvPv~i~~~~~-------~~~~~~i~i~~g~pi~~~~~~~~~~~~~~~~~ 193 (203)
T cd07992 121 SHDRPRLLPLKAGAARMALEALEAGQKDVKIVPVGLNYEDK-------SRFRSRVLVEFGKPISVSAFEEAEASRDVEKK 193 (203)
T ss_pred CCCCCCccCcCccHHHHHHHHHhcCCCCCeEEeeeEEeCCC-------CCCCCeEEEEECCCcccccccccccchhHHHH
Confidence 5666654 888999977666667999999999987642 1235899999999999887654 334444444
Q ss_pred HHHHHHHHH
Q psy3418 94 TYKAMSEEY 102 (119)
Q Consensus 94 vr~~m~~~L 102 (119)
+.+++.++|
T Consensus 194 ~~~~~~~~~ 202 (203)
T cd07992 194 LINQLEAEL 202 (203)
T ss_pred HHHHHHHhh
Confidence 444444443
No 10
>PLN02783 diacylglycerol O-acyltransferase
Probab=98.52 E-value=1.5e-07 Score=76.80 Aligned_cols=80 Identities=11% Similarity=0.084 Sum_probs=58.1
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccc---cCCCC-----------------------CcccceeEEEecCcccC
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFT---NDKTK-----------------------KFDSGRNVISILPPIPT 79 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~---p~k~~-----------------------~~~PG~V~V~IlpPI~t 79 (119)
+|.+||| .++|+|||||++.|..+.+ +.+.. ..++.++.+++++||+.
T Consensus 199 ~G~~~lA------~~~g~PIVPv~i~G~~~~~~~~~~~~~~~~~l~r~~~~~p~~~wg~~~~piP~~~~i~vvvG~PI~v 272 (315)
T PLN02783 199 KGFVKIA------METGAPLVPVFCFGQTRAYKWWKPGGPLVPKLSRAIGFTPIVFWGRYGSPIPHRTPMHVVVGKPIEV 272 (315)
T ss_pred CcHHHHH------HHcCCCEEEEEEECchhhhhhhcCCccHHHHHHHhcCcCceeeecccCcccCCCceEEEEecCCccC
Confidence 6888888 6799999999999854433 22110 11467999999999988
Q ss_pred CCC---ChhhHHHHHHHHHHHHHHHHHhhcccCCC
Q psy3418 80 EGL---TKDNVNDLMDRTYKAMSEEYEKITKENTP 111 (119)
Q Consensus 80 ~gl---t~edi~~L~e~vr~~m~~~L~~l~~~~~~ 111 (119)
+.. +.++++++.+++.+.|++.+++.....+-
T Consensus 273 ~~~~~~~~e~v~~~~~~~~~al~~L~~~~k~~~g~ 307 (315)
T PLN02783 273 KKNPQPSQEEVAEVLEQFVEALQDLFEKHKARAGY 307 (315)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 654 34667778888888888888777765543
No 11
>cd07985 LPLAT_GPAT Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT. Lysophospholipid acyltransferase (LPLAT) superfamily member: glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB). LPLATs are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. This subgroup includes glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB).
Probab=98.48 E-value=2.8e-07 Score=72.99 Aligned_cols=80 Identities=10% Similarity=0.126 Sum_probs=64.1
Q ss_pred ecC---CCcc-ccce---------eEeeccCCCCCCCCc--EEeEEEcCCcccccCCCC---------CcccceeEEEec
Q psy3418 19 RSK---NASV-PASC---------KIVIEASPLTPHVVA--TLPPILCTIPYFTNDKTK---------KFDSGRNVISIL 74 (119)
Q Consensus 19 ~~~---~~~~-~~~~---------k~~~~~~~~~ka~vP--IVPVvI~gt~~i~p~k~~---------~~~PG~V~V~Il 74 (119)
||+ +|.+ ||+| +|+ +++++| |+|++|. +|++||+... .++++.|.|.|+
T Consensus 126 R~r~~~~g~~~p~~Fd~~~~~~~~~La------~~s~~p~hi~Plai~-~ydi~Ppp~~v~~~ige~r~~~f~~v~i~vg 198 (235)
T cd07985 126 RDRPDANGEWYPDPFDPSAVEMMRLLA------QKSRVPTHLYPMALL-TYDIMPPPKQVEKEIGEKRAVAFTGVGLAVG 198 (235)
T ss_pred CCCCCCCCCccCCccchHHHHHHHHHH------HhcCCCceEEeeEEE-eecccCCCccccccccccccccccceEEEec
Confidence 775 5666 8777 455 699999 9999999 6689997433 347789999999
Q ss_pred CcccCCCC------ChhhHHHHHHHHHHHHHHHHHhh
Q psy3418 75 PPIPTEGL------TKDNVNDLMDRTYKAMSEEYEKI 105 (119)
Q Consensus 75 pPI~t~gl------t~edi~~L~e~vr~~m~~~L~~l 105 (119)
+||+.+++ ..+..+++.+.+++.+.+.|..+
T Consensus 199 ~~i~~~~~~~~~~d~~e~~~~~~~~i~~~v~~~y~~l 235 (235)
T cd07985 199 EEIDFSAIAATHKDPEEVREAFSKAAFDSVKRLYNVL 235 (235)
T ss_pred CCccchhhhcccCCcHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999876 35667789999999999998653
No 12
>cd07983 LPLAT_DUF374-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: DUF374. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are the uncharacterized DUF374 phospholipid/glycerol acyltransferases and similar proteins.
Probab=98.43 E-value=1.7e-07 Score=69.38 Aligned_cols=72 Identities=15% Similarity=0.110 Sum_probs=46.4
Q ss_pred ecCCCcc-ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCC---c-cc-ceeEEEecCcccCCCC-ChhhHHHHH
Q psy3418 19 RSKNASV-PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKK---F-DS-GRNVISILPPIPTEGL-TKDNVNDLM 91 (119)
Q Consensus 19 ~~~~~~~-~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~---~-~P-G~V~V~IlpPI~t~gl-t~edi~~L~ 91 (119)
|+..+.. +|.++|+ .++++|||||++.+++. ++.+.+. + +| |+++|.|++||++... +.++.+++.
T Consensus 108 r~~~~~~~~G~~~lA------~~~~~pIvPv~i~~~~~-~~~~~~~~~~~p~~~~~~~v~~~~pi~~~~~~~~~~~~~~~ 180 (189)
T cd07983 108 RGPRYKVKPGVILLA------RKSGAPIVPVAIAASRA-WRLKSWDRFIIPKPFSRVVIVFGEPIHVPPDADEEELEEYR 180 (189)
T ss_pred CCcceecchHHHHHH------HHhCCCEEEEEEEEEcc-EeccCccccccCCCCcceEEEEeCCEeeCCCCCHHHHHHHH
Confidence 3334445 6667887 68999999999998865 3333221 1 24 8999999999998643 334444444
Q ss_pred HHHHHH
Q psy3418 92 DRTYKA 97 (119)
Q Consensus 92 e~vr~~ 97 (119)
+.+.+.
T Consensus 181 ~~~~~~ 186 (189)
T cd07983 181 LELEAA 186 (189)
T ss_pred HHHHHH
Confidence 444443
No 13
>cd07988 LPLAT_ABO13168-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: Unknown ABO13168. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are uncharacterized phospholipid/glycerol acyltransferases such as the Acinetobacter baumannii ATCC 17978 locus ABO13168 putative acyltransferase, and similar proteins.
Probab=98.16 E-value=1.1e-06 Score=64.90 Aligned_cols=53 Identities=19% Similarity=0.108 Sum_probs=40.2
Q ss_pred ecCCCcc-ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHH
Q psy3418 19 RSKNASV-PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLM 91 (119)
Q Consensus 19 ~~~~~~~-~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~ 91 (119)
|++++.. +|.+++| .++|+||+||++.+++ ++|+|++||++++...++.++|.
T Consensus 106 R~~~~~fk~G~~~lA------~~~~~PIvPv~i~~~~--------------~~v~~g~pi~~~~~~~~~~~~l~ 159 (163)
T cd07988 106 RSKVDKWKTGFYHIA------RGAGVPILLVYLDYKR--------------KTVGIGPLFEPSGDIEADLAAIR 159 (163)
T ss_pred CCCCcChhhHHHHHH------HHcCCCEEEEEEecCc--------------EEEEECCcCcCCCCHHHHHHHHH
Confidence 6776666 5667777 5789999999998752 48999999999877655544443
No 14
>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated
Probab=98.11 E-value=4.7e-06 Score=74.89 Aligned_cols=72 Identities=11% Similarity=0.014 Sum_probs=49.1
Q ss_pred ecCCCcc----ccceeEeeccCCCCCCCCcEEeEEEcCCcc--------cccCCCCCcccceeEEEecCcccCCCCChhh
Q psy3418 19 RSKNASV----PASCKIVIEASPLTPHVVATLPPILCTIPY--------FTNDKTKKFDSGRNVISILPPIPTEGLTKDN 86 (119)
Q Consensus 19 ~~~~~~~----~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~--------i~p~k~~~~~PG~V~V~IlpPI~t~glt~ed 86 (119)
||+++++ +|.++|+ .++++||+||+|.|.+. .++.+.....+++|+|.|++||+++ ...+
T Consensus 522 ~~~~~~~~~~~~g~~~~a------~~~~~~i~pv~~~g~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~pi~~~-~~~~- 593 (1146)
T PRK08633 522 ITRNGQLNEFKRGFELIV------KGTDVPIIPFYIRGLWGSIFSRASGKFLWRWPTRIPYPVTVAFGKPMPAH-STAH- 593 (1146)
T ss_pred CCCCCCccchhHHHHHHH------HHCCCCEEEEEEecccccccccccccccccccCCCCceEEEEECCCcCcc-cCHH-
Confidence 8888877 6888888 56899999999987532 2332222336899999999999986 3333
Q ss_pred HHHHHHHHHHHHHH
Q psy3418 87 VNDLMDRTYKAMSE 100 (119)
Q Consensus 87 i~~L~e~vr~~m~~ 100 (119)
++.+.+++...+
T Consensus 594 --~~~~~~~~l~~~ 605 (1146)
T PRK08633 594 --EVKQAVFELSFD 605 (1146)
T ss_pred --HHHHHHHHHHHH
Confidence 344444444333
No 15
>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional
Probab=98.09 E-value=4.5e-06 Score=75.68 Aligned_cols=78 Identities=13% Similarity=0.125 Sum_probs=55.0
Q ss_pred ecCCCcc----ccceeEeeccCCCCCCCCcEEeEEEcCCcccccC----CCCCcccceeEEEecCcccCCCCC---h-hh
Q psy3418 19 RSKNASV----PASCKIVIEASPLTPHVVATLPPILCTIPYFTND----KTKKFDSGRNVISILPPIPTEGLT---K-DN 86 (119)
Q Consensus 19 ~~~~~~~----~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~----k~~~~~PG~V~V~IlpPI~t~glt---~-ed 86 (119)
|++++.+ +|.++|+ .++++||+||+|.|++..+.. +...+.++++++++++||+++... . +.
T Consensus 534 r~~~~~~~~f~~g~~~~a------~~~~~~i~pv~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~e~ 607 (1140)
T PRK06814 534 ITVTGSLMKIYDGPGMIA------DKAGAMVVPVRIDGLQFTHFSRLKNQVRRKWFPKVTVTILPPVKLAVDPELKGRER 607 (1140)
T ss_pred CCCCCCccccchHHHHHH------HHCCCCEEEEEEcCcccccccccCCCcccccCCceEEEecCCcccCCCccccchhh
Confidence 8888888 7888887 478999999999998653221 112335688999999999876543 2 33
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3418 87 VNDLMDRTYKAMSEEY 102 (119)
Q Consensus 87 i~~L~e~vr~~m~~~L 102 (119)
.+.+.+.+++.|.+.+
T Consensus 608 r~~~~~~l~~~~~~~~ 623 (1140)
T PRK06814 608 RSAAGAALYDIMSDMM 623 (1140)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566777776654
No 16
>COG0204 PlsC 1-acyl-sn-glycerol-3-phosphate acyltransferase [Lipid metabolism]
Probab=97.96 E-value=1.7e-05 Score=59.88 Aligned_cols=78 Identities=14% Similarity=0.192 Sum_probs=57.6
Q ss_pred ecCCCc-c----ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHH
Q psy3418 19 RSKNAS-V----PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDR 93 (119)
Q Consensus 19 ~~~~~~-~----~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~ 93 (119)
|+.+|. + +|+++++ .++++||+||++.+++..++..... .+.+.+++||+...+..+....+.+.
T Consensus 149 r~~~~~~~~~~k~g~~~~a------~~~~~PivPv~i~g~~~~~~~~~~~----~~~~~~~~pi~~~~~~~~~~~~~~~~ 218 (255)
T COG0204 149 RSRGGEELLPFKRGAARLA------LEAGVPIVPVAIVGAEELFPSLKKG----KVKVRIGPPIDISALPEPLLPELAEA 218 (255)
T ss_pred cCCCccccCCCcchHHHHH------HHcCCCEEeEEEeCCcccccCCCce----eEEEEecCCcCccccchhhhhhHHHH
Confidence 666543 3 6777777 4688999999999998777753332 29999999999988877667777777
Q ss_pred HHHHHHHHHHhhc
Q psy3418 94 TYKAMSEEYEKIT 106 (119)
Q Consensus 94 vr~~m~~~L~~l~ 106 (119)
+.+.....+.+..
T Consensus 219 ~~~~~~~~~~~~~ 231 (255)
T COG0204 219 VEQLARPILLELL 231 (255)
T ss_pred HHHHHHHHHHHhh
Confidence 7776666666553
No 17
>PLN02833 glycerol acyltransferase family protein
Probab=97.90 E-value=2.7e-05 Score=65.21 Aligned_cols=77 Identities=9% Similarity=-0.107 Sum_probs=51.4
Q ss_pred ecCCCccccceeEeeccCCCCCCCCcEEeEEEcCCc---ccccC--CCCCc---------ccceeEEEecCcccCCCCCh
Q psy3418 19 RSKNASVPASCKIVIEASPLTPHVVATLPPILCTIP---YFTND--KTKKF---------DSGRNVISILPPIPTEGLTK 84 (119)
Q Consensus 19 ~~~~~~~~~~~k~~~~~~~~~ka~vPIVPVvI~gt~---~i~p~--k~~~~---------~PG~V~V~IlpPI~t~glt~ 84 (119)
|++++.+-. ||=- +.++|+||+||+|.... ..+|. +..++ .++.+.|.+||||+++ ..
T Consensus 248 rs~~~~l~~-FK~G-----af~~g~pI~PVaI~y~~~~~~~fW~s~~~s~~~~l~~ll~~~~~~v~V~~LpPi~~~--~~ 319 (376)
T PLN02833 248 CVNNEYTVM-FKKG-----AFELGCTVCPIAIKYNKIFVDAFWNSRKQSFTMHLLRLMTSWAVVCDVWYLEPQTLR--PG 319 (376)
T ss_pred ccCCCcccc-cchh-----hHhcCCeEEEEEEEecCcccccccCCCCccHHHhHHHHhCCCceEEEEEECCCcCCC--CC
Confidence 777777610 2211 13569999999997542 22332 11111 2568999999999875 23
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q psy3418 85 DNVNDLMDRTYKAMSEEYE 103 (119)
Q Consensus 85 edi~~L~e~vr~~m~~~L~ 103 (119)
++..++.++|++.|.+++.
T Consensus 320 e~~~efA~rv~~~Ia~~lg 338 (376)
T PLN02833 320 ETPIEFAERVRDMIAKRAG 338 (376)
T ss_pred CCHHHHHHHHHHHHHHhcC
Confidence 6788899999999999874
No 18
>TIGR03703 plsB glycerol-3-phosphate O-acyltransferase. Members of this protein family are PlsB, glycerol-3-phosphate O-acyltransferase, present in E. coli and numerous related species. In many bacteria, PlsB is not found, and appears to be replaced by a two enzyme system for 1-acyl-glycerol-3-phosphate biosynthesis, the PlsX/Y system.
Probab=97.87 E-value=4.8e-06 Score=75.47 Aligned_cols=77 Identities=13% Similarity=0.140 Sum_probs=54.6
Q ss_pred EecCCCcc----ccceeEeeccC-CCCCCCCcEEeEEEcCCcccccCC-----------------------CCCccccee
Q psy3418 18 VRSKNASV----PASCKIVIEAS-PLTPHVVATLPPILCTIPYFTNDK-----------------------TKKFDSGRN 69 (119)
Q Consensus 18 ~~~~~~~~----~~~~k~~~~~~-~~~ka~vPIVPVvI~gt~~i~p~k-----------------------~~~~~PG~V 69 (119)
.||++|.+ .|-++|+.|+. .-...+++||||+| ++.++++.+ +.+.+.|+|
T Consensus 381 tRSrtGkll~pK~G~l~~a~~a~~~~~~~~v~IVPVsI-~Yekv~E~~~y~~El~G~~K~kEsl~~~l~~~~~l~~~G~i 459 (799)
T TIGR03703 381 GRSRTGRLLPPKTGMLAMTLQAMLRGIRRPITLVPVYI-GYEHVMEVATYLKELRGKRKEKESVFGVLKTLRKLRNFGQG 459 (799)
T ss_pred CcCCCCCccchHHHHHHHHHHHhhccCCCCcEEEEEEE-ecccccchhHHHHHhcCCCccccCHHHHHHHHhccCCCceE
Confidence 49999988 67789998852 22345999999988 444554431 111358999
Q ss_pred EEEecCcccCCCCChhhHHHHHHHHH
Q psy3418 70 VISILPPIPTEGLTKDNVNDLMDRTY 95 (119)
Q Consensus 70 ~V~IlpPI~t~glt~edi~~L~e~vr 95 (119)
+|.|++||+..++..++...|.+.+.
T Consensus 460 ~V~FGePIsl~~~l~~~~~~~~~~~~ 485 (799)
T TIGR03703 460 YVNFGEPINLNDYLNKHVPNWRDDIN 485 (799)
T ss_pred EEEeCCCccHHHHhhhhhhhhhhhhc
Confidence 99999999998887666655555433
No 19
>PRK03355 glycerol-3-phosphate acyltransferase; Validated
Probab=97.66 E-value=2.5e-05 Score=70.81 Aligned_cols=65 Identities=14% Similarity=0.067 Sum_probs=45.8
Q ss_pred EecCCCcc----ccceeEeeccC-CCCCCCCcEEeEEEc-------CCcccccCCCCC-----------------cccce
Q psy3418 18 VRSKNASV----PASCKIVIEAS-PLTPHVVATLPPILC-------TIPYFTNDKTKK-----------------FDSGR 68 (119)
Q Consensus 18 ~~~~~~~~----~~~~k~~~~~~-~~~ka~vPIVPVvI~-------gt~~i~p~k~~~-----------------~~PG~ 68 (119)
.||++|.+ .|-+++++|+- .+...++|||||+|+ +++.....+... -+.|+
T Consensus 356 TRSrtGkLl~pK~Gll~~~~~a~~~~~~~~v~IVPV~I~Yd~v~E~~~y~~e~~G~~k~~esl~~~~~~~~~l~~~~~G~ 435 (783)
T PRK03355 356 TRSRTGKLLPPKLGLLSYVADAYLDGRSDDVLLQPVSISFDQLHEIGEYAAEARGGEKTPEGLRWLYNYIKAQGERNYGK 435 (783)
T ss_pred CCCCCCCCCcccccHHHHHHHHHHhcccCCCEEEEEEEEecccccchhHHHHhcCCCcccccHHHHHHHHHHhccCCcee
Confidence 59999998 57678887643 234689999999997 543222222110 13499
Q ss_pred eEEEecCcccCCCC
Q psy3418 69 NVISILPPIPTEGL 82 (119)
Q Consensus 69 V~V~IlpPI~t~gl 82 (119)
++|.|++||+.+++
T Consensus 436 i~V~fGePisl~~~ 449 (783)
T PRK03355 436 IYVRFGEPVSMRQY 449 (783)
T ss_pred EEEEECCCCCHHHh
Confidence 99999999999886
No 20
>PLN02177 glycerol-3-phosphate acyltransferase
Probab=97.65 E-value=5.6e-05 Score=65.30 Aligned_cols=62 Identities=11% Similarity=0.100 Sum_probs=48.3
Q ss_pred CCcEEeEEEcCCcccccCCC---C--------Ccccc-eeEEEecCcccCCC--CChhhHHHHHHHHHHHHHHHHH
Q psy3418 42 VVATLPPILCTIPYFTNDKT---K--------KFDSG-RNVISILPPIPTEG--LTKDNVNDLMDRTYKAMSEEYE 103 (119)
Q Consensus 42 ~vPIVPVvI~gt~~i~p~k~---~--------~~~PG-~V~V~IlpPI~t~g--lt~edi~~L~e~vr~~m~~~L~ 103 (119)
.+|||||+|++++.+|.... + +++|- .+.|++|+||+++. +..++-.++.++|++.|+++|.
T Consensus 393 ~~pIVPVAI~~~~~~f~~~t~~~~~~~d~~~~~~~p~~~y~V~fL~~l~~~~~~~~~~~~~evAn~Vq~~i~~~lg 468 (497)
T PLN02177 393 TDRIVPVAINTKQSMFHGTTVRGYKLLDPYFVFMNPRPTYEITFLNQLPKELTCKGGKSPIEVANYIQRVLAGTLG 468 (497)
T ss_pred CCcEEEEEEEcccccccccccccceecchhhhhcCCCceEEEEECCCCChhhcccCCCCHHHHHHHHHHHHHHhhC
Confidence 36999999999998887531 1 12665 59999999999874 4456667799999999998863
No 21
>cd06551 LPLAT Lysophospholipid acyltransferases (LPLATs) of glycerophospholipid biosynthesis. Lysophospholipid acyltransferase (LPLAT) superfamily members are acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis. These proteins catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this superfamily are LPLATs such as glycerol-3-phosphate 1-acyltransferase (GPAT, PlsB), 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), lysophosphatidylcholine acyltransferase 1 (LPCAT-1), lysophosphatidylethanolamine acyltransferase (LPEAT, also known as, MBOAT2, membrane-bound O-acyltransferase domain-containing protein 2), lipid A biosynthesis lauroyl/myristoyl acyltransferase, 2-acylglycerol O-acyltransferase (MGAT), dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-p
Probab=97.64 E-value=8.2e-05 Score=54.03 Aligned_cols=63 Identities=16% Similarity=0.131 Sum_probs=48.0
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHH
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEY 102 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L 102 (119)
+|-++|+ .++++|||||.+.+....+ ...+++++.+++||.++... +.+.+.++.++.|.+.+
T Consensus 124 ~g~~~la------~~~~~~IvPv~i~~~~~~~------~~~~~~~i~~~~pi~~~~~~--~~~~~~~~~~~~~~~~~ 186 (187)
T cd06551 124 PGVAHLA------EKAGVPIVPVALRYTFELF------EQFPEIFVRIGPPIPYAETA--LGEELAAELANRLTRLL 186 (187)
T ss_pred chHHHHH------HHcCCcEEEEEEecccccc------CCCCcEEEEECCCccccccc--cHHHHHHHHHHHHHHhc
Confidence 6777887 6789999999998874433 24468999999999988653 35667777777777654
No 22
>cd07989 LPLAT_AGPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.
Probab=97.63 E-value=5.6e-05 Score=54.90 Aligned_cols=62 Identities=21% Similarity=0.307 Sum_probs=43.8
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCC--ChhhHHHHHHH
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGL--TKDNVNDLMDR 93 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~gl--t~edi~~L~e~ 93 (119)
+|.+++| .++++||+||.+.+.+..++..........++|.+++||+.+.+ ..++-.++.++
T Consensus 119 ~g~~~lA------~~~~~~Vvpv~~~~~~~~~~~~~~~~~~~~~~i~~~~pi~~~~~~~~~~~~~~~~~~ 182 (184)
T cd07989 119 SGAFRLA------KEAGVPIVPVAISGTWGSLPKGKKLPRPGRVTVRIGEPIPPEGLELAEEDRKELREK 182 (184)
T ss_pred ccHHHHH------HHcCCCEEeEEEeChhhhCcCCCCcCCCCcEEEEEcCCcChhhhccchHHHHHHHHh
Confidence 7777888 56799999999999866665432223456899999999998873 33444444443
No 23
>cd07984 LPLAT_LABLAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: LABLAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as lipid A biosynthesis lauroyl/myristoyl (LABLAT, HtrB) acyltransferases and similar proteins.
Probab=97.62 E-value=5.5e-05 Score=55.41 Aligned_cols=62 Identities=13% Similarity=0.264 Sum_probs=50.3
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKI 105 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~l 105 (119)
+|.++|+ .++++||+|+.+..+ .+|+++|.|++||++.. .++.+++.+++.+.+++.+.+.
T Consensus 120 ~G~~~lA------~~~~~pivp~~~~~~-----------~~~~~~i~~~~~i~~~~--~~~~~~~~~~~~~~lE~~i~~~ 180 (192)
T cd07984 120 TGPARLA------LKTGAPVVPAFAYRL-----------PGGGYRIEFEPPLENPP--SEDVEEDTQRLNDALEAAIREH 180 (192)
T ss_pred HHHHHHH------HHHCCcEEEEEEEEc-----------CCCCEEEEEeCCCCCCC--CCCHHHHHHHHHHHHHHHHHhC
Confidence 6666777 679999999999764 16789999999998864 4678889999999988888765
Q ss_pred c
Q psy3418 106 T 106 (119)
Q Consensus 106 ~ 106 (119)
.
T Consensus 181 P 181 (192)
T cd07984 181 P 181 (192)
T ss_pred c
Confidence 4
No 24
>cd07993 LPLAT_DHAPAT-like Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: GPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as dihydroxyacetone phosphate acyltransferase (DHAPAT, also known as 1 glycerol-3-phosphate O-acyltransferase 1) and similar proteins.
Probab=97.52 E-value=4.6e-06 Score=63.18 Aligned_cols=63 Identities=17% Similarity=0.103 Sum_probs=42.2
Q ss_pred ecCCCcc----ccceeEeeccCC-CCCCCCcEEeEEEcCCc----------------------ccccCCCCCc-ccceeE
Q psy3418 19 RSKNASV----PASCKIVIEASP-LTPHVVATLPPILCTIP----------------------YFTNDKTKKF-DSGRNV 70 (119)
Q Consensus 19 ~~~~~~~----~~~~k~~~~~~~-~~ka~vPIVPVvI~gt~----------------------~i~p~k~~~~-~PG~V~ 70 (119)
||++|.+ +|.+++++|+.. -...++|||||+|+..+ .+.+....+. ++|+++
T Consensus 112 rs~~g~~~~~k~G~~~~a~~~~~~~~~~~v~IvPV~i~Y~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~g~v~ 191 (205)
T cd07993 112 RSRTGKLLPPKLGLLSVVVEAYLKGSVPDVLIVPVSISYDRVLEEELYAEELLGPPKPKESLSGLLGASKILRENFGRIR 191 (205)
T ss_pred CCCCCCccchHHHHHHHHHHHHhhCCCCCeEEEEeEEeeCcccchHHHHHHHcCCCCCCccHHHHHHHHHHhhccCCeEE
Confidence 8888887 788888876311 11359999999998332 1112111222 689999
Q ss_pred EEecCcccCCC
Q psy3418 71 ISILPPIPTEG 81 (119)
Q Consensus 71 V~IlpPI~t~g 81 (119)
|.+++||+.+.
T Consensus 192 v~~~~Pi~~~~ 202 (205)
T cd07993 192 VDFGEPISLRE 202 (205)
T ss_pred EECCCCcCHHH
Confidence 99999997653
No 25
>PRK04974 glycerol-3-phosphate acyltransferase; Validated
Probab=97.42 E-value=7.1e-05 Score=68.15 Aligned_cols=74 Identities=14% Similarity=0.231 Sum_probs=50.3
Q ss_pred EecCCCcc----ccceeEeeccCCC-CCCCCcEEeEEEcCCcccccCC-------------CCCc----------cccee
Q psy3418 18 VRSKNASV----PASCKIVIEASPL-TPHVVATLPPILCTIPYFTNDK-------------TKKF----------DSGRN 69 (119)
Q Consensus 18 ~~~~~~~~----~~~~k~~~~~~~~-~ka~vPIVPVvI~gt~~i~p~k-------------~~~~----------~PG~V 69 (119)
.||++|.+ .|-++|+.++..- ....++||||+| ++.++++.+ ...+ +.|+|
T Consensus 391 tRSRtGkllppK~G~l~~a~~a~~~~~~~dv~IVPVsI-sYekv~E~~~y~~el~G~~K~kEsl~~il~~i~~~~~~G~v 469 (818)
T PRK04974 391 GRSRTGRLLQPKTGMLAMTLQAMLRGSRRPITLVPVYI-GYEHVMEVGTYAKELRGAPKEKESLFQVLRGIRKLRNFGQG 469 (818)
T ss_pred CcCCCCCCcchhhhHHHHHHHHhhcccCCCcEEEEEEE-eccchhhhHHHHHHhcCCCCcCcCHHHHHHHHhhcCCCceE
Confidence 49999988 6888999885321 234699999988 443444431 1111 46999
Q ss_pred EEEecCcccCCCCChhhHHHHHH
Q psy3418 70 VISILPPIPTEGLTKDNVNDLMD 92 (119)
Q Consensus 70 ~V~IlpPI~t~glt~edi~~L~e 92 (119)
+|.|++||+..++..++...+.+
T Consensus 470 ~V~FGePisl~~~~~~~~~~~~~ 492 (818)
T PRK04974 470 YVNFGEPIPLNDYLNQHVPEWRE 492 (818)
T ss_pred EEEeCCCccHHHHhhhhchhhhh
Confidence 99999999987765555444443
No 26
>COG2121 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.14 E-value=0.012 Score=46.28 Aligned_cols=42 Identities=24% Similarity=0.122 Sum_probs=31.7
Q ss_pred CCCCCCcEEeEEEcCCcccccCCCC-Cc---cc-ceeEEEecCcccCC
Q psy3418 38 LTPHVVATLPPILCTIPYFTNDKTK-KF---DS-GRNVISILPPIPTE 80 (119)
Q Consensus 38 ~~ka~vPIVPVvI~gt~~i~p~k~~-~~---~P-G~V~V~IlpPI~t~ 80 (119)
|+++++||+||.+..++ .+-.++| .+ .| |++++.+++||..+
T Consensus 142 A~~sg~pi~pv~~~~sr-~~~lKsWDk~~IP~PFgk~~i~~gePi~~~ 188 (214)
T COG2121 142 AQKSGVPIIPVGVATSR-CWRLKTWDKTIIPLPFGKIKIVLGEPIEVD 188 (214)
T ss_pred hHhcCCCeEEEEEeeee-eeeecccccccccCccceeEEEecCceeec
Confidence 48999999999998886 3332322 22 45 99999999999875
No 27
>PF03982 DAGAT: Diacylglycerol acyltransferase ; InterPro: IPR007130 The terminal step of triacylglycerol (TAG) formation is catalysed by the enzyme diacylglycerol acyltransferase (DAGAT) [, ].; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups
Probab=95.24 E-value=0.055 Score=44.08 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=32.8
Q ss_pred ccceeEEEecCcccCCCC---ChhhHHHHHHHHHHHHHHHHHhhcccCC
Q psy3418 65 DSGRNVISILPPIPTEGL---TKDNVNDLMDRTYKAMSEEYEKITKENT 110 (119)
Q Consensus 65 ~PG~V~V~IlpPI~t~gl---t~edi~~L~e~vr~~m~~~L~~l~~~~~ 110 (119)
++.+|.++|++||+.... +.||++++.++--+.+++.+++.....+
T Consensus 239 ~r~pi~~VVG~PI~v~~~~~Pt~e~Vd~~H~~Y~~~L~~LFd~~K~~~g 287 (297)
T PF03982_consen 239 YRRPITTVVGKPIPVPKIENPTQEDVDKLHARYIEALRELFDKHKAKYG 287 (297)
T ss_pred cCCceEEEeeceecccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 446799999999988653 4466777777777777777766665544
No 28
>PRK08419 lipid A biosynthesis lauroyl acyltransferase; Reviewed
Probab=94.87 E-value=0.036 Score=44.08 Aligned_cols=63 Identities=14% Similarity=0.178 Sum_probs=42.5
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCC--hhhHHHHHHHHHHHHHHHHH
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLT--KDNVNDLMDRTYKAMSEEYE 103 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt--~edi~~L~e~vr~~m~~~L~ 103 (119)
+|-++|+ .++|+||+|+.+... ..+..+|+|.+||+..... +++..+..+.+-+.+++.+.
T Consensus 213 ~g~a~LA------~k~~apvvpv~~~~~-----------~~~~~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~lE~~Ir 275 (298)
T PRK08419 213 TIASILA------RRYNALIIPVFIFND-----------DYSHFTITFFPPIRSKITDDAEADILEATQAQASACEEMIR 275 (298)
T ss_pred hhHHHHH------HHHCCCEEEEEEEEC-----------CCCeEEEEEcCCccCCCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 5666777 789999999998432 1245778899999764332 24556666666666666665
Q ss_pred hh
Q psy3418 104 KI 105 (119)
Q Consensus 104 ~l 105 (119)
+.
T Consensus 276 ~~ 277 (298)
T PRK08419 276 KK 277 (298)
T ss_pred hC
Confidence 43
No 29
>PLN02499 glycerol-3-phosphate acyltransferase
Probab=94.86 E-value=0.073 Score=46.49 Aligned_cols=78 Identities=10% Similarity=0.107 Sum_probs=50.1
Q ss_pred ecCCCcc-ccceeEeeccCCCCCCCCcEEeEEEcCCcccc-----------cCCCCCcccc-eeEEEecCcccCCC--CC
Q psy3418 19 RSKNASV-PASCKIVIEASPLTPHVVATLPPILCTIPYFT-----------NDKTKKFDSG-RNVISILPPIPTEG--LT 83 (119)
Q Consensus 19 ~~~~~~~-~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~-----------p~k~~~~~PG-~V~V~IlpPI~t~g--lt 83 (119)
||+++.+ +.+. +++| ...|||||+++....+| ..=.++++|- ...|++|++++++. -.
T Consensus 363 rsreg~LlrFk~-l~ae------la~pVVPVAI~~~~~~f~gtta~g~k~~Dp~~f~mnP~p~y~v~fL~~~~~~~t~~~ 435 (498)
T PLN02499 363 TCREPFLLRFSA-LFAE------LTDRIVPVAMNYRVGFFHATTARGWKGLDPIFFFMNPRPVYEVTFLNQLPVEATCSS 435 (498)
T ss_pred CCCCCcccccch-hhhh------hcCceEeEEEEeccceEEEEcCCCCchhhhhhheecCCceEEEEEcCCCChhhccCC
Confidence 7777777 4333 6655 33899999986533222 1111233886 68899999999871 01
Q ss_pred hhhHHHHHHHHHHHHHHHHH
Q psy3418 84 KDNVNDLMDRTYKAMSEEYE 103 (119)
Q Consensus 84 ~edi~~L~e~vr~~m~~~L~ 103 (119)
.+.-.+...+|++.+.++|.
T Consensus 436 g~s~~evan~vQ~~la~~Lg 455 (498)
T PLN02499 436 GKSPHDVANYVQRILAATLG 455 (498)
T ss_pred CCChHHHHHHHHHHHHHHhC
Confidence 23445688888888888773
No 30
>KOG2847|consensus
Probab=94.03 E-value=0.045 Score=44.45 Aligned_cols=48 Identities=15% Similarity=0.155 Sum_probs=37.0
Q ss_pred eeEeeccCCCCCCCCc-EEeEEEcCCcccccCC-CCCcccc-eeEEEecCcccCCC
Q psy3418 29 CKIVIEASPLTPHVVA-TLPPILCTIPYFTNDK-TKKFDSG-RNVISILPPIPTEG 81 (119)
Q Consensus 29 ~k~~~~~~~~~ka~vP-IVPVvI~gt~~i~p~k-~~~~~PG-~V~V~IlpPI~t~g 81 (119)
..|++| ....| |+|+.+.|--++||.. ...-++| +|+|.|++||+-..
T Consensus 176 gRlI~e-----a~~~PIVlPi~h~Gmedi~P~~~p~vp~~Gk~vtV~IG~P~~~~d 226 (286)
T KOG2847|consen 176 GRLILE-----APKPPIVLPIWHTGMEDIMPEAPPYVPRFGKTVTVTIGDPINFDD 226 (286)
T ss_pred eeeeec-----CCCCCEEeehhhhhHHHhCccCCCccCCCCCEEEEEeCCCcchhH
Confidence 457877 55566 4699999999999976 4444777 89999999997543
No 31
>PRK07920 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=93.32 E-value=0.1 Score=41.65 Aligned_cols=60 Identities=15% Similarity=0.185 Sum_probs=43.8
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKI 105 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~l 105 (119)
+|-++|+ .++|+||||+.+.-.. .| .++.|.||++... .++..+..+.+.+.+++.+.+.
T Consensus 211 ~g~a~LA------~~~~apVvp~~~~r~~-----------~~-y~v~~~~~~~~~~--~~~~~~~t~~~~~~lE~~Ir~~ 270 (298)
T PRK07920 211 AGPAALA------LETGAALLPVHLWFEG-----------DG-WGFRVHPPLDVPS--AEDVAAMTQALADAFAANIAAH 270 (298)
T ss_pred CCHHHHH------HHHCCcEEEEEEEEeC-----------Ce-EEEEEeCCCCCCc--hhHHHHHHHHHHHHHHHHHHhC
Confidence 6777888 7899999999986531 13 5688899997542 4677777777777777776553
No 32
>PLN02588 glycerol-3-phosphate acyltransferase
Probab=92.71 E-value=0.24 Score=43.57 Aligned_cols=62 Identities=8% Similarity=0.087 Sum_probs=40.1
Q ss_pred CcEEeEEEcCCcccccC---------CCCCc--ccc-eeEEEecCcccCCC----C---ChhhHHHHHHHHHHHHHHHHH
Q psy3418 43 VATLPPILCTIPYFTND---------KTKKF--DSG-RNVISILPPIPTEG----L---TKDNVNDLMDRTYKAMSEEYE 103 (119)
Q Consensus 43 vPIVPVvI~gt~~i~p~---------k~~~~--~PG-~V~V~IlpPI~t~g----l---t~edi~~L~e~vr~~m~~~L~ 103 (119)
.|||||+|.....++-. +.++| +|- ...|++|++++... - +.+.-.+..++|+..|.+.|.
T Consensus 421 ~~IVPVAI~~~~~~f~gtt~~g~k~~D~~~fl~nP~p~y~V~fL~~v~~~~e~~~~~p~~g~s~~evAn~VQ~~iA~~LG 500 (525)
T PLN02588 421 DVIVPVAIDSHVTFFYGTTASGLKAFDPIFFLLNPFPSYTVQLLDPVSGSSSSTCQDPDNGKLKFEVANHVQHEIGNALG 500 (525)
T ss_pred CceeeEEEEEeccccceeecCCCcccceeEEEecCCceEEEEEcCcCCchhhhcccCcccCCChHHHHHHHHHHHHHhhC
Confidence 78999999763222111 11222 674 79999999998621 1 123445688999999988874
Q ss_pred h
Q psy3418 104 K 104 (119)
Q Consensus 104 ~ 104 (119)
-
T Consensus 501 ~ 501 (525)
T PLN02588 501 F 501 (525)
T ss_pred c
Confidence 3
No 33
>PRK06553 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=92.34 E-value=0.18 Score=40.55 Aligned_cols=63 Identities=10% Similarity=0.026 Sum_probs=42.6
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCC--ChhhHHHHHHHHHHHHHHHHH
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGL--TKDNVNDLMDRTYKAMSEEYE 103 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~gl--t~edi~~L~e~vr~~m~~~L~ 103 (119)
+|-++|+ .++++||||+.+.-. + .|..++.|.||++.... ..+|+.+..+++.+.+++.+.
T Consensus 232 ~~~a~LA------~~~~apVvp~~~~R~----~-------~g~y~i~~~~~~~~~~~~~~~~d~~~~t~~~n~~lE~~Ir 294 (308)
T PRK06553 232 PLLAKLA------RQYDCPVHGARCIRL----P-------GGRFRLELTERVELPRDADGQIDVQATMQALTDVVEGWVR 294 (308)
T ss_pred chHHHHH------HHHCCCEEEEEEEEc----C-------CCeEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHHH
Confidence 6667777 899999999987432 1 23577888999976432 224566667776666666665
Q ss_pred hh
Q psy3418 104 KI 105 (119)
Q Consensus 104 ~l 105 (119)
+.
T Consensus 295 ~~ 296 (308)
T PRK06553 295 EY 296 (308)
T ss_pred cC
Confidence 43
No 34
>PRK08706 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=91.48 E-value=0.25 Score=39.16 Aligned_cols=61 Identities=10% Similarity=0.137 Sum_probs=43.5
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKI 105 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~l 105 (119)
+|-++|+ .++++||+|+...-. + .|..++.|.+|++.. ..+|+.+..+.+-+.+++.+.+.
T Consensus 207 ~g~a~LA------~~~~apvvp~~~~R~----~-------~~~~~i~i~~~~~~~--~~~~~~~~t~~~~~~lE~~Ir~~ 267 (289)
T PRK08706 207 TGLSRIA------ALANAKVIPAIPVRE----A-------DNTVTLHFYPAWDSF--PSEDAQADAQRMNRFIEERVREH 267 (289)
T ss_pred hHHHHHH------HhcCCeEEEEEEEEc----C-------CCcEEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHcC
Confidence 6677888 899999999987542 1 134567778887652 34677788888888888777654
No 35
>TIGR02207 lipid_A_htrB lipid A biosynthesis lauroyl (or palmitoleoyl) acyltransferase. This model represents a narrow clade of acyltransferases, nearly all of which transfer a lauroyl group to KDO2-lipid IV-A, a lipid A precursor; these proteins are termed lipid A biosynthesis lauroyl acyltransferase, HtrB. An exception is a closely related paralog of E. coli HtrB, LpxP, which acts in cold shock conditions by transferring a palmitoleoyl rather than lauroyl group to the lipid A precursor. Members of this family are homologous to the family of acyltransferases responsible for the next step in lipid A biosynthesis.
Probab=89.69 E-value=0.39 Score=38.33 Aligned_cols=62 Identities=15% Similarity=0.138 Sum_probs=42.1
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKI 105 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~l 105 (119)
+|-++|| .++|+||+|+...-. +.+ +..++.+.||++. ...+|+.+..+.+-+.+++.+.+.
T Consensus 219 ~g~a~LA------~~~~apvip~~~~r~----~~~------~~~~i~~~~~~~~--~~~~~~~~~t~~~~~~lE~~Ir~~ 280 (303)
T TIGR02207 219 TGTSILA------RLSKCAVVPFTPRRN----EDG------SGYRLKIDPPLDD--FPGDDEIAAAARMNKIVEKMIMRA 280 (303)
T ss_pred HHHHHHH------HHhCCeEEEEEEEEe----CCC------CeEEEEEeCCCCC--CCCCCHHHHHHHHHHHHHHHHHcC
Confidence 4666777 789999999988432 111 2467888888865 233666777777777777766543
No 36
>PRK06946 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=89.46 E-value=0.46 Score=37.91 Aligned_cols=62 Identities=11% Similarity=0.099 Sum_probs=40.2
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKI 105 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~l 105 (119)
+|.++|+ .++|+||||+...-. +.+ ...++.+.||+++. ..+|..+..+.+.+.+++.+.+.
T Consensus 210 ~~~a~LA------~~~~a~vvp~~~~r~----~~~------~~~~~~~~~~~~~~--~~~~~~~~t~~~n~~lE~~Ir~~ 271 (293)
T PRK06946 210 TAVSRLA------RTGGAQVVPFITEVL----PDY------KGYRLRVFKPWENY--PTGDDDLDARRMNAFLEEQIRLM 271 (293)
T ss_pred HHHHHHH------HhcCCeEEEEEEEEe----CCC------CeEEEEEeCCCcCC--CCCCHHHHHHHHHHHHHHHHHcC
Confidence 7777888 899999999965321 111 12456788888752 33555566666666776666543
No 37
>PRK06628 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=88.46 E-value=0.65 Score=36.97 Aligned_cols=63 Identities=14% Similarity=0.131 Sum_probs=40.4
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCC--ChhhHHHHHHHHHHHHHHHHH
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGL--TKDNVNDLMDRTYKAMSEEYE 103 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~gl--t~edi~~L~e~vr~~m~~~L~ 103 (119)
+|.++|+ .++++||||+...-. + .|..++.+.||++.... ..+|+.+..+.+-+.+++.+.
T Consensus 213 ~~~a~LA------~~~~apvv~~~~~r~----~-------~~~~~i~~~~~~~~~~~~~~~~~~~~~t~~~n~~lE~~Ir 275 (290)
T PRK06628 213 SAIAKIA------LQYKYPIIPCQIIRT----K-------GSYFKVIVHPQLKFEQTGDNKADCYNIMLNINQMLGEWVK 275 (290)
T ss_pred hHHHHHH------HHHCCCEEEEEEEEC----C-------CCeEEEEEcCCCCCCCCCChhhhHHHHHHHHHHHHHHHHH
Confidence 6667887 899999999987432 1 13466788888865322 224555556666666666655
Q ss_pred hh
Q psy3418 104 KI 105 (119)
Q Consensus 104 ~l 105 (119)
+.
T Consensus 276 ~~ 277 (290)
T PRK06628 276 QN 277 (290)
T ss_pred cC
Confidence 43
No 38
>PRK11915 glycerol-3-phosphate acyltransferase; Reviewed
Probab=87.96 E-value=0.36 Score=43.32 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=42.5
Q ss_pred EecCCCcc-ccceeEe---eccCCC-CCCCCcEEeEEEcCCcccccCCC----------------CCc--------ccce
Q psy3418 18 VRSKNASV-PASCKIV---IEASPL-TPHVVATLPPILCTIPYFTNDKT----------------KKF--------DSGR 68 (119)
Q Consensus 18 ~~~~~~~~-~~~~k~~---~~~~~~-~ka~vPIVPVvI~gt~~i~p~k~----------------~~~--------~PG~ 68 (119)
.||.+|.+ |..+=|+ .|+.-- ....++||||+|+-- +++.... +.+ +-|.
T Consensus 204 ~RSRtGkll~Pk~GlLs~vv~~~~~~~~~dV~iVPVsI~YD-rV~E~~~y~~El~G~~K~~Esl~~l~~~~~~l~~~~G~ 282 (621)
T PRK11915 204 GRTRTGKLRPPVFGILRYITDAVDEIDGPEVYLVPTSIVYD-QLHEVEAMTTEAYGAVKRPEDLRFLVRLARQQGERLGR 282 (621)
T ss_pred CCCCCCCCCCCchhhHHHHHHHHhcCCCCCeEEEEEEEeec-ccccHHHHHHHhcCCCCCccHHHHHHHHHHHHhhcCce
Confidence 49999988 5444333 332211 367999999999753 4555421 111 3599
Q ss_pred eEEEecCcccCCCC
Q psy3418 69 NVISILPPIPTEGL 82 (119)
Q Consensus 69 V~V~IlpPI~t~gl 82 (119)
+.|.|++||+..++
T Consensus 283 i~V~FgePisL~~~ 296 (621)
T PRK11915 283 AYLDFGEPLPLRKR 296 (621)
T ss_pred EEEECCCCccHHHH
Confidence 99999999988765
No 39
>TIGR00530 AGP_acyltrn 1-acyl-sn-glycerol-3-phosphate acyltransferases. 1-acyl-sn-glycerol-3-phosphate acyltransferase is also called 1-AGP acyltransferase, lysophosphatidic acid acyltransferase, and LPA acyltransferase.
Probab=87.95 E-value=0.15 Score=34.58 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=19.7
Q ss_pred ecCCCcc----ccceeEeeccCCCCCCCCcEEeEEEc
Q psy3418 19 RSKNASV----PASCKIVIEASPLTPHVVATLPPILC 51 (119)
Q Consensus 19 ~~~~~~~----~~~~k~~~~~~~~~ka~vPIVPVvI~ 51 (119)
|++++.+ +|.++++ .++++||+||.++
T Consensus 100 ~~~~~~~~~f~~g~~~la------~~~~~pvvpv~~~ 130 (130)
T TIGR00530 100 RSRGRDILPFKKGAFHIA------IKAGVPILPVVLS 130 (130)
T ss_pred CCCCCCCCCcchhHHHHH------HHcCCCEEeEEeC
Confidence 4555554 5777777 5689999999875
No 40
>PRK08733 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=87.06 E-value=0.73 Score=36.95 Aligned_cols=60 Identities=22% Similarity=0.292 Sum_probs=41.9
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKI 105 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~l 105 (119)
+|-++|+ .++++||+|+...- . +|..++.|.||++.. ..+|+.+..+.+-+.+++.+.+.
T Consensus 224 ~g~a~LA------~~~~apvvp~~~~r-----~-------~~~y~i~i~~~~~~~--~~~~i~~~t~~~~~~lE~~Ir~~ 283 (306)
T PRK08733 224 TATHQLA------RLTGCAVVPYFHRR-----E-------GGRYVLKIAPPLADF--PSDDVIADTTRVNAAIEDMVREA 283 (306)
T ss_pred HHHHHHH------HHhCCeEEEEEEEE-----e-------CCeEEEEEECCCCCC--CCCCHHHHHHHHHHHHHHHHHcC
Confidence 5666777 79999999998721 1 134667788888642 34677777777777777776654
No 41
>PF03279 Lip_A_acyltrans: Bacterial lipid A biosynthesis acyltransferase; InterPro: IPR004960 Bacterial lipopolysachharides (LPS) are glycolipids that make up the outer monolayer of the outer membranes of most Gram-negative bacteria. Though LPS moleculesare variable, they all show the same general features: an outer polysaccharide which is attached to the lipid component, termed lipid A []. The polysaccharide component consists of a variable repeat-structure polysaccharide known as the O-antigen, and a highly conserved short core oligosaccharide which connects the O-antigen to lipid A. Lipid A is a glucosamine-based phospholipid that makes up the membrane anchor region of LPS []. The structure of lipid A is relatively invariant between species, presumably reflecting its fundamental role in membrane integrity. Recognition of lipid A by the innate immune system can lead to a response even at picomolar levels. In some genera, such as Neisseria and Haemophilus, lipooligosaccharides (LOS) are the predominant glycolipids []. These are analogous to LPS except that they lack O-antigens, with the LOS oligosaccharide structures limited to 10 saccharide units. The bacterial lipid A biosynthesis protein, or lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase 2.3.1 from EC, transfers myristate or laurate, activated on ACP, to the lipid IVA moiety of (KDO)2-(lauroyl)-lipid IVA during lipopolysaccharide core biosynthesis.; GO: 0016746 transferase activity, transferring acyl groups, 0009244 lipopolysaccharide core region biosynthetic process, 0016021 integral to membrane
Probab=86.89 E-value=1.4 Score=34.70 Aligned_cols=63 Identities=14% Similarity=0.246 Sum_probs=44.5
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKI 105 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~l 105 (119)
.|-++|+ .++++||+|+...-. +.+ ...++.+.||++... .+++.++.+++.+.+++.+.+.
T Consensus 221 ~g~a~lA------~~~~apvvp~~~~r~----~~~------~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~lE~~Ir~~ 282 (295)
T PF03279_consen 221 TGPARLA------RKTGAPVVPVFAYRE----PDG------SHYRIEIEPPLDFPS--SEDIEELTQRYNDRLEEWIREH 282 (295)
T ss_pred cHHHHHH------HHhCCcEEEEEEEEe----CCC------CEEEEEEeecccCCc--cchHHHHHHHHHHHHHHHHHcC
Confidence 4556666 689999999997543 111 356788899886643 2377788888888888877654
Q ss_pred c
Q psy3418 106 T 106 (119)
Q Consensus 106 ~ 106 (119)
.
T Consensus 283 P 283 (295)
T PF03279_consen 283 P 283 (295)
T ss_pred h
Confidence 3
No 42
>PRK05646 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=86.75 E-value=0.76 Score=36.88 Aligned_cols=60 Identities=13% Similarity=0.109 Sum_probs=38.3
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccc-eeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSG-RNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEK 104 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG-~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~ 104 (119)
+|-++|+ .++++||||+...-. ..| ..++.+.||++.. ..++..+..+.+-+.+++.+.+
T Consensus 223 ~g~a~LA------~~~~apvvp~~~~r~-----------~~g~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~lE~~Ir~ 283 (310)
T PRK05646 223 TATTKFA------RLGRARVIPFTQKRL-----------ADGSGYRLVIHPPLEDF--PGESEEADCLRINQWVERVVRE 283 (310)
T ss_pred hHHHHHH------HhhCCcEEEEEEEEe-----------CCCCeEEEEEeCCCcCC--CCCCHHHHHHHHHHHHHHHHHc
Confidence 6667888 799999999988432 112 3667888888642 2245545555555555555544
No 43
>PRK08905 lipid A biosynthesis lauroyl acyltransferase; Validated
Probab=86.35 E-value=0.85 Score=36.28 Aligned_cols=61 Identities=3% Similarity=-0.078 Sum_probs=40.7
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKI 105 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~l 105 (119)
+|-++|+ .++++||+|+.+.-. +. .+..++.+.+|+++. .+++.+..+.+-+.+++.+.+.
T Consensus 201 ~gpa~lA------~~~~apvvp~~~~R~----~~------~~~y~~~~~~~~~~~---~~~~~~~t~~~~~~lE~~Ir~~ 261 (289)
T PRK08905 201 TLVARLA------EVTGVPVIFVAGERL----PR------GRGYRLHLRPVQEPL---PGDKAADAAVINAEIERLIRRF 261 (289)
T ss_pred HHHHHHH------HhhCCcEEEEEEEEc----CC------CCcEEEEEecCCCCC---CCCHHHHHHHHHHHHHHHHHcC
Confidence 6677888 899999999987432 11 113557777888753 2566667777777777666543
No 44
>PRK08943 lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase; Validated
Probab=86.20 E-value=0.85 Score=36.72 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=42.2
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKI 105 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~l 105 (119)
+|-++|| .++|+||||+.+.-. + ..+..++.|.+|++.. ..+|..+..+.+-+.+++.+.+.
T Consensus 231 ~g~a~LA------~k~~apvvp~~~~R~----~------~~~~~~i~~~~~~~~~--~~~d~~~~t~~~~~~lE~~Ir~~ 292 (314)
T PRK08943 231 PGIGRLA------KVCRARVVPLFPVYN----G------KTHRLDIEIRPPMDDL--LSADDETIARRMNEEVEQFVGPH 292 (314)
T ss_pred HHHHHHH------HHhCCeEEEEEEEEe----C------CCCeEEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHcC
Confidence 7777888 799999999987421 1 1134667788888642 22566677777777777766553
No 45
>PRK06860 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=86.15 E-value=0.8 Score=36.72 Aligned_cols=64 Identities=16% Similarity=0.151 Sum_probs=43.0
Q ss_pred CccccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccc-eeEEEecCcccCCCCChhhHHHHHHHHHHHHHHH
Q psy3418 23 ASVPASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSG-RNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEE 101 (119)
Q Consensus 23 ~~~~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG-~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~ 101 (119)
...+|-++|| .++++||+|+.+.-. ..| ..++.+.+|++.. ..+|..+..+.+.+.+++.
T Consensus 222 ~t~~g~a~LA------~~~~apvvp~~~~R~-----------~~~~~~~i~~~~~~~~~--~~~d~~~~t~~~n~~lE~~ 282 (309)
T PRK06860 222 ATTTGTWMLA------RMSKAAVIPFVPRRK-----------PDGKGYELIILPPEDSP--PLDDAEATAAWMNKVVEKC 282 (309)
T ss_pred hhHHHHHHHH------HHhCCeEEEEEEEEe-----------CCCCeEEEEEecCCCCC--CCCCHHHHHHHHHHHHHHH
Confidence 3346677887 799999999988432 123 3678888888753 2356666777777676666
Q ss_pred HHhh
Q psy3418 102 YEKI 105 (119)
Q Consensus 102 L~~l 105 (119)
+.+.
T Consensus 283 Ir~~ 286 (309)
T PRK06860 283 ILMA 286 (309)
T ss_pred HHcC
Confidence 6543
No 46
>PTZ00374 dihydroxyacetone phosphate acyltransferase; Provisional
Probab=86.05 E-value=0.1 Score=49.21 Aligned_cols=63 Identities=14% Similarity=0.129 Sum_probs=44.0
Q ss_pred ecCCCcc----ccceeEeeccCCCC---CCCCcEEeEEEcCCcccccCCC----------------CC------c--ccc
Q psy3418 19 RSKNASV----PASCKIVIEASPLT---PHVVATLPPILCTIPYFTNDKT----------------KK------F--DSG 67 (119)
Q Consensus 19 ~~~~~~~----~~~~k~~~~~~~~~---ka~vPIVPVvI~gt~~i~p~k~----------------~~------~--~PG 67 (119)
||++|.+ .|-+||+.|+.--. --+++||||+|+-= +++.... +. + +-|
T Consensus 720 RSRTGKLLpPK~GlLkmalda~l~g~~~v~dV~IVPVSIsYE-rVlE~elyakEl~G~kK~kEsl~~llk~ir~L~~~~G 798 (1108)
T PTZ00374 720 RSRTGKTMAPKLGLLKFICDTFYEGQQELDDVLIIPVSLSYD-ELLETTLYAKEQLGVSKPKENPGNLLRARSLLKRRHG 798 (1108)
T ss_pred cCCCCCcccchhhHHHHHHHHHhhcccCCCCCEEEEEEEehh-hhhhHHHHHHHhcCCCCCCCCHHHHHHHHHHHhccCc
Confidence 9999988 59999998742111 14999999999753 3333210 00 1 359
Q ss_pred eeEEEecCcccCCCC
Q psy3418 68 RNVISILPPIPTEGL 82 (119)
Q Consensus 68 ~V~V~IlpPI~t~gl 82 (119)
+|+|.|++||+..++
T Consensus 799 rV~V~FGEPISLrey 813 (1108)
T PTZ00374 799 KIHVHIGEPVSLRSF 813 (1108)
T ss_pred eEEEECCCCccHHHH
Confidence 999999999987664
No 47
>PRK14014 putative acyltransferase; Provisional
Probab=85.35 E-value=2 Score=34.89 Aligned_cols=47 Identities=6% Similarity=-0.114 Sum_probs=28.2
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCc-ccceeEEEec
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKF-DSGRNVISIL 74 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~-~PG~V~V~Il 74 (119)
.||++++.++. ...-.+|+||+|.......+...... ++++|+|.|.
T Consensus 206 ~ggf~~a~~~~--~~~~~~I~dvti~y~~~~~~~~~~~~g~~~~v~v~i~ 253 (301)
T PRK14014 206 AGGIAFALNAM--GEQFDGLLDVTIVYPDGRPSFWDLLSGRVKKIVVHVR 253 (301)
T ss_pred CccHHHHHHhh--hccCCEEEEEEEEeCCCCCCHHHhhcCCccEEEEEEE
Confidence 79999996643 24458999999987643322111111 5566655544
No 48
>TIGR02208 lipid_A_msbB lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase. This family consists of MsbB in E. coli and closely related proteins in other species. MsbB is homologous to HtrB (TIGR02207) and acts immediately after it in the biosynthesis of KDO-2 lipid A (also called Re LPS and Re endotoxin). These two enzymes act after creation of KDO-2 lipid IV-A by addition of the KDO sugars.
Probab=83.67 E-value=1.5 Score=35.14 Aligned_cols=62 Identities=11% Similarity=0.112 Sum_probs=42.0
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKI 105 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~l 105 (119)
+|-++|+ .++++||+|+...-. +.+ +..++.+.+|++.. ..+|+.++.+.+-+.+++.+.+.
T Consensus 222 ~~~a~LA------~~~~apvv~~~~~r~----~~~------~~~~i~~~~~~~~~--~~~~~~~~t~~~n~~lE~~Ir~~ 283 (305)
T TIGR02208 222 PVVGRLA------KAGNAQVVPVFPGYN----QVT------GKFELTVRPAMATE--LSVDPEQEARAMNKEVEQFILPY 283 (305)
T ss_pred HHHHHHH------HhcCCeEEEEEEEEE----CCC------CeEEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHcC
Confidence 6777787 899999999987421 111 24567788888642 23577777777777777766553
No 49
>KOG0831|consensus
Probab=83.06 E-value=1.4 Score=36.91 Aligned_cols=41 Identities=17% Similarity=0.236 Sum_probs=27.9
Q ss_pred ceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHhhccc
Q psy3418 67 GRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKITKE 108 (119)
Q Consensus 67 G~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~l~~~ 108 (119)
-.|.+.+++||+... +....++..++.++...++|.++=.+
T Consensus 278 ~pi~~VVG~Pi~v~k-~~~Pt~e~id~~H~~y~~~L~~LF~~ 318 (334)
T KOG0831|consen 278 RPITTVVGEPIPVPK-TENPTQEQIDKYHGLYIDALRKLFDE 318 (334)
T ss_pred CcceeEecCccCCcc-CcCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 468999999999876 33444556666666666666665443
No 50
>PRK08025 lipid A biosynthesis palmitoleoyl acyltransferase; Reviewed
Probab=78.68 E-value=2.6 Score=33.67 Aligned_cols=61 Identities=13% Similarity=0.079 Sum_probs=36.5
Q ss_pred cccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHh
Q psy3418 25 VPASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEK 104 (119)
Q Consensus 25 ~~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~ 104 (119)
.+|-++|+ .++++||+|+...-. +.+ ...++.|.+|++.. . +|..+..+.+.+.+++.+.+
T Consensus 222 ~~g~~~LA------~~~~apvvp~~~~R~----~~~------~~~~i~~~~~~~~~--~-~~~~~~~~~~n~~lE~~Ir~ 282 (305)
T PRK08025 222 TNGTYVLS------RLSGAAMLTVTMVRK----ADY------SGYRLFITPEMEGY--P-TDENQAAAYMNKIIEKEIMR 282 (305)
T ss_pred HHHHHHHH------HhhCCeEEEEEEEEe----CCC------CeEEEEEeCCccCC--C-CCHHHHHHHHHHHHHHHHHc
Confidence 36667787 899999999987432 111 12356778887542 2 45545555555555555543
No 51
>PRK05906 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=78.37 E-value=2.5 Score=36.54 Aligned_cols=62 Identities=10% Similarity=0.111 Sum_probs=40.1
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCC-C-CChhhHHHHHHHHHHHHHHHHH
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTE-G-LTKDNVNDLMDRTYKAMSEEYE 103 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~-g-lt~edi~~L~e~vr~~m~~~L~ 103 (119)
+|-++|+ .++++||||+.+.-. +. | .++.+.+|+.+. . -..++..++++++-+.+++.+.
T Consensus 238 tgpA~LA------~rtgApVVpv~~~R~----~~-------g-y~v~i~~~l~~~~~~~~~~d~~~~tq~~n~~LE~~IR 299 (454)
T PRK05906 238 TSPALLA------YKTGKPVIAVAIYRK----PN-------G-YLVVPSKKFYANKSLPIKESTEQLMDRLMRFLEKGIA 299 (454)
T ss_pred hHHHHHH------HHhCCeEEEEEEEEe----CC-------e-EEEEEEcCccCcccCCcchHHHHHHHHHHHHHHHHHH
Confidence 6777888 899999999887432 11 3 456677777432 2 2235666777776677776665
Q ss_pred hh
Q psy3418 104 KI 105 (119)
Q Consensus 104 ~l 105 (119)
+.
T Consensus 300 ~~ 301 (454)
T PRK05906 300 CK 301 (454)
T ss_pred hC
Confidence 43
No 52
>smart00563 PlsC Phosphate acyltransferases. Function in phospholipid biosynthesis and have either glycerolphosphate, 1-acylglycerolphosphate, or 2-acylglycerolphosphoethanolamine acyltransferase activities. Tafazzin, the product of the gene mutated in patients with Barth syndrome, is a member of this family.
Probab=78.22 E-value=0.76 Score=30.04 Aligned_cols=21 Identities=10% Similarity=0.170 Sum_probs=17.2
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcC
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCT 52 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~g 52 (119)
+|.++++ .++++||+||++.+
T Consensus 97 ~g~~~la------~~~~~~v~Pv~~~~ 117 (118)
T smart00563 97 KGAARLA------LEAGVPIVPVAIRG 117 (118)
T ss_pred ccHHHHH------HHcCCCEEeEEEec
Confidence 7777888 46789999999875
No 53
>PRK08734 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=75.91 E-value=3.4 Score=33.17 Aligned_cols=62 Identities=6% Similarity=-0.039 Sum_probs=40.7
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKI 105 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~l 105 (119)
+|-++|+ .++++||+|+.+.-. +. .+..++.+.+|++.. ..+|..+..+.+-+.+++.+.+.
T Consensus 213 ~g~a~LA------~~~~apVvp~~~~R~----~~------~~~y~~~~~~~~~~~--~~~~~~~~~~~~n~~lE~~Ir~~ 274 (305)
T PRK08734 213 TLVNRLA------ERTGATVLYGWCERI----GP------DLEFALHVQPADPAV--ADPDPLRAATALNAGIERIARRD 274 (305)
T ss_pred hHHHHHH------HHhCCeEEEEEEEEc----CC------CCcEEEEEecCCCCC--CCCCHHHHHHHHHHHHHHHHHcC
Confidence 6667888 899999999887432 11 134677787776532 23566667677777776666543
No 54
>PF01553 Acyltransferase: Acyltransferase; InterPro: IPR002123 This family contains acyltransferases involved in phospholipid biosynthesis and other proteins of unknown function []. This domain is found in tafazzins, defects in which are the cause of Barth syndrome; a severe inherited disorder which is often fatal in childhood and is characterised by cardiac and skeletal abnormalities. Phospholipid/glycerol acyltransferase is not found in the viruses or the archaea and is under represented in the bacteria. Bacterial glycerol-phosphate acyltransferases are involved in membrane biogenesis since they use fatty acid chains to form the first membrane phospholipids [].; GO: 0016746 transferase activity, transferring acyl groups, 0008152 metabolic process; PDB: 1IUQ_A 1K30_A.
Probab=75.78 E-value=0.16 Score=34.50 Aligned_cols=20 Identities=15% Similarity=0.321 Sum_probs=7.5
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEc
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILC 51 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~ 51 (119)
+|.+.++.+ +++|||||+|+
T Consensus 113 ~G~~~~a~~------~~~~ivPv~i~ 132 (132)
T PF01553_consen 113 KGAFHIALK------AKVPIVPVAIS 132 (132)
T ss_dssp HHHHHHHHH------H----------
T ss_pred HHHHHHHHH------cCCccccccCC
Confidence 788888855 59999999985
No 55
>COG1560 HtrB Lauroyl/myristoyl acyltransferase [Cell envelope biogenesis, outer membrane]
Probab=69.50 E-value=5.4 Score=32.76 Aligned_cols=61 Identities=15% Similarity=0.179 Sum_probs=41.0
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEK 104 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~ 104 (119)
+|-+||+ .+++++|+|+...-. + .-+..++.|+||.. +...+|+.+..+..-+.|++.+..
T Consensus 224 t~~~~LA------~~~~a~vip~~~~r~----~------~g~~y~l~i~p~~~--~~~~~D~~~~a~~mn~~~E~~I~~ 284 (308)
T COG1560 224 TGPAKLA------RLTGAAVVPVFPVRN----P------DGSGYTLHIHPPMT--DDPSEDVEADAQRMNDFVEKWIRA 284 (308)
T ss_pred chHHHHH------HHhCCCEEEEEEEEe----C------CCCeEEEEEecccc--CCCCCCHHHHHHHHHHHHHHHHHc
Confidence 7888888 679999999976431 1 12367899999653 444567666666666666665543
No 56
>PRK05645 lipid A biosynthesis lauroyl acyltransferase; Provisional
Probab=58.88 E-value=23 Score=27.99 Aligned_cols=62 Identities=5% Similarity=-0.085 Sum_probs=37.9
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHhh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKI 105 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~l 105 (119)
++.+.++ .++++||||+.+.-. +.+ ...++.+.++++. ...+++.+..+.+.+.+++.+.+.
T Consensus 212 ~~~~~la------~~~~~pvv~~~~~r~----~~~------~~y~i~~~~~~~~--~~~~~~~~~t~~~~~~lE~~Ir~~ 273 (295)
T PRK05645 212 KFVPNML------AGGKAVGVFLHALRL----PDG------SGYKVILEAAPED--MYSTDVEVSAAAMSKVVERYVRAY 273 (295)
T ss_pred hHHHHHH------HhhCCeEEEEEEEEc----CCC------CeEEEEEecCCcC--CCCCCHHHHHHHHHHHHHHHHHcC
Confidence 3455555 568999999987432 111 1355666666542 233667777777777777776553
No 57
>PRK13446 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=56.24 E-value=55 Score=23.42 Aligned_cols=81 Identities=5% Similarity=0.011 Sum_probs=50.3
Q ss_pred eEEEEecCCCcc---ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCc--ccceeEEEecCcccCCCCChhhHH
Q psy3418 14 TYILVRSKNASV---PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKF--DSGRNVISILPPIPTEGLTKDNVN 88 (119)
Q Consensus 14 ~~~~~~~~~~~~---~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~--~PG~V~V~IlpPI~t~glt~edi~ 88 (119)
.++.+++.+|.+ ||=+-+++. ...=++=+...+....|--..+++ .+..|.|-.-..+..++++.+..+
T Consensus 22 ~~V~lpt~~G~~gILp~H~p~it~------L~~G~l~i~~~~~~~~~~v~gG~~~v~~~~v~Il~~~a~~~~~iD~~~a~ 95 (136)
T PRK13446 22 DEVGAPGVLGEFGVLPGHAPFLTA------LKIGELTYKKGGKTHYVAVNGGFAEVSNNKVTVLAETAERAEEIDVERAR 95 (136)
T ss_pred EEEEEEcCccCeEEcCCCcceEEE------eeccEEEEEeCCcEEEEEEcCEEEEEECCEEEEEeeeEEEhhhCCHHHHH
Confidence 467788899988 877777744 222222222233322121122233 777888888888888888877777
Q ss_pred HHHHHHHHHHHH
Q psy3418 89 DLMDRTYKAMSE 100 (119)
Q Consensus 89 ~L~e~vr~~m~~ 100 (119)
+..++..+.+.+
T Consensus 96 ~~~~~A~~~l~~ 107 (136)
T PRK13446 96 AALERAEQRLKK 107 (136)
T ss_pred HHHHHHHHHHHh
Confidence 777777776654
No 58
>PRK02289 4-oxalocrotonate tautomerase; Provisional
Probab=52.50 E-value=44 Score=20.29 Aligned_cols=24 Identities=17% Similarity=0.217 Sum_probs=21.2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHh
Q psy3418 81 GLTKDNVNDLMDRTYKAMSEEYEK 104 (119)
Q Consensus 81 glt~edi~~L~e~vr~~m~~~L~~ 104 (119)
|.+.++.++|.+.+.+.+.+.+..
T Consensus 11 Grs~EqK~~L~~~it~a~~~~~~~ 34 (60)
T PRK02289 11 GRSQEQKNALAREVTEVVSRIAKA 34 (60)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCc
Confidence 778899999999999999988754
No 59
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=52.45 E-value=13 Score=32.93 Aligned_cols=63 Identities=5% Similarity=-0.093 Sum_probs=34.5
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHHHHHh
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEK 104 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~ 104 (119)
+|-++|+ .++++||||+...- . +. -...++++.||+.-++-..++...+.+...+.++..+.+
T Consensus 574 ~g~~~lA------~~~~~pvv~~~~~~--~--~~------~~~y~l~~~~~~~~~~~~~~~~~~~~~~y~~~l~~~~~~ 636 (656)
T PRK15174 574 TFCSRLA------WKMHLPTVFSVPIW--K--NR------HIHFVLERMVDPLKFESQLSFTERWKENYLQCVTRILQS 636 (656)
T ss_pred cHHHHHH------HHHCCCEEEeEEEE--e--cC------ceeEEEEecCCCccchhHHHHHHHHHHHHHHHHHHHHhc
Confidence 5667888 78999999988721 1 11 123667777775331112233444444444444444443
No 60
>CHL00063 atpE ATP synthase CF1 epsilon subunit
Probab=52.17 E-value=85 Score=22.42 Aligned_cols=81 Identities=7% Similarity=0.018 Sum_probs=49.5
Q ss_pred eEEEEecCCCcc---ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCc--ccceeEEEecCcccCCCCChhhHH
Q psy3418 14 TYILVRSKNASV---PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKF--DSGRNVISILPPIPTEGLTKDNVN 88 (119)
Q Consensus 14 ~~~~~~~~~~~~---~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~--~PG~V~V~IlpPI~t~glt~edi~ 88 (119)
.++.+++.+|.+ ||=+-+++. ...=++=+...|.+..|--..+++ .+..|.|-.-..+..++.+.+..+
T Consensus 20 ~~V~~p~~~G~~gIL~~H~p~it~------L~~G~l~i~~~~~~~~~~v~gG~~~v~~~~v~Il~~~a~~~~dID~~~a~ 93 (134)
T CHL00063 20 EEIILPTNSGQIGVLPNHAPIATA------LDIGVLRIRLNDQWLTMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQ 93 (134)
T ss_pred EEEEEEcCccCceecCCCcceEeE------ecceEEEEEECCeEEEEEEcceEEEEECCEEEEEECeeEchhhCCHHHHH
Confidence 457788888887 666666632 222222222233222222222333 777888888888888888888777
Q ss_pred HHHHHHHHHHHH
Q psy3418 89 DLMDRTYKAMSE 100 (119)
Q Consensus 89 ~L~e~vr~~m~~ 100 (119)
+..++..+.+.+
T Consensus 94 ~~~~~A~~~l~~ 105 (134)
T CHL00063 94 QTLEIAEANLEK 105 (134)
T ss_pred HHHHHHHHHHHh
Confidence 777777777654
No 61
>PF08979 DUF1894: Domain of unknown function (DUF1894); InterPro: IPR012031 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.; PDB: 1Z9V_A.
Probab=47.27 E-value=38 Score=23.26 Aligned_cols=40 Identities=18% Similarity=0.146 Sum_probs=18.8
Q ss_pred ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCccc--ceeEEEe
Q psy3418 26 PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDS--GRNVISI 73 (119)
Q Consensus 26 ~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~P--G~V~V~I 73 (119)
|+|+|+. + +.=-|+|=+||.+.+.+-+||. .+| |+.-+++
T Consensus 36 ~pG~~i~-g---v~iiG~ppipVgi~~~~iifpy----tKPC~Gtfvl~i 77 (89)
T PF08979_consen 36 PPGYKIL-G---VRIIGIPPIPVGIDGDNIIFPY----TKPCYGTFVLRI 77 (89)
T ss_dssp S--EEES-S---S---SS----EEEE-TS-EEEE-------SS-EEEEE-
T ss_pred CCCcEEE-e---eEEcCCCCEEEEEcCCEEEEEe----cCCccceEEEEe
Confidence 8999998 4 3456999999999998777774 355 6666666
No 62
>PF01922 SRP19: SRP19 protein; InterPro: IPR002778 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the SRP19 subunit. The SRP19 protein is unstructured but forms a compact core domain and two extended RNA-binding loops upon binding the signal recognition particle (SRP) RNA [].; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle; PDB: 3DLU_A 3DLV_B 2J37_B 1MFQ_B 3KTV_D 1RY1_B 1JID_A 1KVV_A 1KVN_A 3KTW_B ....
Probab=45.65 E-value=74 Score=21.60 Aligned_cols=54 Identities=7% Similarity=0.033 Sum_probs=33.8
Q ss_pred CCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCc-ccCCCCChhhHHHHHHHHHHHHHH
Q psy3418 39 TPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPP-IPTEGLTKDNVNDLMDRTYKAMSE 100 (119)
Q Consensus 39 ~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpP-I~t~glt~edi~~L~e~vr~~m~~ 100 (119)
.+.|++.+ +... +.+|.. +++.+|+|+|..-.. +.++ .....+|+..+-+.|.+
T Consensus 39 ~~Lgl~~~---~E~~-K~yPr~-~~~~~GRV~V~~~~~~~~~~---~~~K~~Ll~~Ia~~i~~ 93 (95)
T PF01922_consen 39 KKLGLPCV---VEPD-KRYPRD-WWENPGRVRVQLKNDPVNPE---IKSKKELLKKIAEKIKK 93 (95)
T ss_dssp HHTTSEEE---EETT-ECTTCG-STSCTTEEEEE-CSTBSSTT---SSSHHHHHHHHHHHHHH
T ss_pred HHcCCCEE---Eccc-cCcChh-hcccCceEEEEeCCCcccCC---CCCHHHHHHHHHHHHHH
Confidence 46677766 4433 567854 567999999998874 3332 23455677777666654
No 63
>PRK13452 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=44.64 E-value=1.2e+02 Score=22.07 Aligned_cols=81 Identities=7% Similarity=-0.002 Sum_probs=48.0
Q ss_pred eEEEEecCCCcc---ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCc--ccceeEEEecCcccCCCCChhhHH
Q psy3418 14 TYILVRSKNASV---PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKF--DSGRNVISILPPIPTEGLTKDNVN 88 (119)
Q Consensus 14 ~~~~~~~~~~~~---~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~--~PG~V~V~IlpPI~t~glt~edi~ 88 (119)
.++.+++.+|.+ ||=+-+++. ...=++=+...+.+..+--..+++ .+..|.|-.......++.+.+..+
T Consensus 23 ~~V~lp~~~G~~GILp~H~plit~------L~~G~l~i~~~~~~~~~~v~gGf~eV~~n~v~Ilad~ae~~~eID~~~ae 96 (145)
T PRK13452 23 DMVSLRGSAGEMGIAYGHTELLST------LPAGVVNVRKDQHTDVLYVSGGIVEVTPTRVTIMVDDMERAENLNQAEAE 96 (145)
T ss_pred EEEEEEcCccCeEecCCCcceEee------ecceEEEEEECCcEEEEEEcceEEEEECCEEEEEeCeeeccccCCHHHHH
Confidence 467788888888 777777733 222222222233322222222333 777888888888888888777666
Q ss_pred HHHHHHHHHHHH
Q psy3418 89 DLMDRTYKAMSE 100 (119)
Q Consensus 89 ~L~e~vr~~m~~ 100 (119)
+-.++..+.+.+
T Consensus 97 ~a~~~Ae~~L~~ 108 (145)
T PRK13452 97 KARARAKEVLKN 108 (145)
T ss_pred HHHHHHHHHHHh
Confidence 666666665544
No 64
>PRK13443 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=43.42 E-value=1.3e+02 Score=21.89 Aligned_cols=82 Identities=10% Similarity=-0.001 Sum_probs=47.3
Q ss_pred eEEEEecCCCcc---ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCc--ccceeEEEecCcccCCCCChhhHH
Q psy3418 14 TYILVRSKNASV---PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKF--DSGRNVISILPPIPTEGLTKDNVN 88 (119)
Q Consensus 14 ~~~~~~~~~~~~---~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~--~PG~V~V~IlpPI~t~glt~edi~ 88 (119)
.++.+++.+|.+ |+=+-++.. .+.=++=|...+....+--..+++ .+..|+|-....+..++.+.+..+
T Consensus 22 ~~V~lpt~~Ge~GILp~H~Plit~------L~pG~v~i~~~~~~~~~avsgGf~eV~~n~V~Ilad~a~~~edID~~~a~ 95 (136)
T PRK13443 22 TAVQIPGADGDMTAMEGHAPTITT------LRPGILRAHGPSGTQEYAVTGGFAEINATSISVLAEKAIPVEELTGAVLD 95 (136)
T ss_pred EEEEEecCccCeeEcCCCcceEEE------ecceEEEEEECCCeEEEEEcceEEEEECCEEEEEeCeeEEhhhCCHHHHH
Confidence 467788888887 666666522 221222222222111111122233 777888888888888888777766
Q ss_pred HHHHHHHHHHHHH
Q psy3418 89 DLMDRTYKAMSEE 101 (119)
Q Consensus 89 ~L~e~vr~~m~~~ 101 (119)
+..++.++.+.+.
T Consensus 96 ~a~~~Ae~~l~~~ 108 (136)
T PRK13443 96 EFIAEARELASVA 108 (136)
T ss_pred HHHHHHHHHHHhc
Confidence 6777776665543
No 65
>TIGR00942 2a6301s05 Monovalent Cation (K+ or Na+):Proton Antiporter-3 (CPA3) subfamily.
Probab=40.58 E-value=48 Score=24.01 Aligned_cols=42 Identities=10% Similarity=0.067 Sum_probs=29.4
Q ss_pred CcccceeEEEecCc---ccCCCCChhhHHHHHHHHHHHHHHHHHh
Q psy3418 63 KFDSGRNVISILPP---IPTEGLTKDNVNDLMDRTYKAMSEEYEK 104 (119)
Q Consensus 63 ~~~PG~V~V~IlpP---I~t~glt~edi~~L~e~vr~~m~~~L~~ 104 (119)
-+-||++.+.+.+- +....++.++.+++.+.+++.++..+.+
T Consensus 97 TLtPGTl~vdv~~~~~~l~vH~ld~~~~e~~~~~i~~~~E~~l~~ 141 (144)
T TIGR00942 97 TLTPGTAWLEYDRDRKIILFHVLDISNEELWRETITRSYEKDLKE 141 (144)
T ss_pred hcCCCEEEEEEeCCCCEEEEEEccCCCHHHHHHHHHHHHHHHHHH
Confidence 34899999998875 4455666667667777777766666554
No 66
>COG4033 Uncharacterized protein conserved in archaea [Function unknown]
Probab=36.14 E-value=39 Score=23.74 Aligned_cols=38 Identities=13% Similarity=0.085 Sum_probs=27.2
Q ss_pred ecCCCcc---ccceeEeeccCCCCCCCCcEEeEEEcCCcccccC
Q psy3418 19 RSKNASV---PASCKIVIEASPLTPHVVATLPPILCTIPYFTND 59 (119)
Q Consensus 19 ~~~~~~~---~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~ 59 (119)
++|-..| ++|-||.-. +.--|+|=|||.+.+.+-+||.
T Consensus 26 ekn~~~V~~v~pGy~I~~g---~~lIG~ppIpvg~~~~~iifpy 66 (102)
T COG4033 26 EKNAEEVYLVPPGYKILPG---IFLIGIPPIPVGYSGEAIIFPY 66 (102)
T ss_pred HhccccEEEcCCcceeccC---eeEeccCCcceeecCCEEEEEe
Confidence 3444455 777777622 3445999999999999888885
No 67
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=34.97 E-value=1e+02 Score=18.33 Aligned_cols=23 Identities=30% Similarity=0.475 Sum_probs=19.9
Q ss_pred CCCChhhHHHHHHHHHHHHHHHH
Q psy3418 80 EGLTKDNVNDLMDRTYKAMSEEY 102 (119)
Q Consensus 80 ~glt~edi~~L~e~vr~~m~~~L 102 (119)
+|.+.+...+|.+.+.+.+.+.+
T Consensus 10 ~grt~eqK~~l~~~it~~l~~~l 32 (63)
T TIGR00013 10 EGRTDEQKRQLIEGVTEAMAETL 32 (63)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHh
Confidence 56788899999999999998887
No 68
>PRK12596 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=34.80 E-value=57 Score=24.37 Aligned_cols=45 Identities=7% Similarity=0.023 Sum_probs=29.3
Q ss_pred CcccceeEEEecCc---ccCCCCChhhHHHHHHHHHHHHHHHHHhhcc
Q psy3418 63 KFDSGRNVISILPP---IPTEGLTKDNVNDLMDRTYKAMSEEYEKITK 107 (119)
Q Consensus 63 ~~~PG~V~V~IlpP---I~t~glt~edi~~L~e~vr~~m~~~L~~l~~ 107 (119)
-+-||++.+.+.+- +....++.+|.++..+.+++.+++.+.+.-.
T Consensus 113 TLTPGTltvdv~~d~~~L~VH~Ld~~~~e~~~~~i~~~~E~~l~~if~ 160 (171)
T PRK12596 113 TASPGTAWVDYNAARGILTIHVLDLEDAETWRHLIKERYERPLIEIFG 160 (171)
T ss_pred ccCCCEEEEEEECCCCEEEEEEeeCCCHHHHHHHHHHHHHHHHHHHhC
Confidence 34899999998754 5555566566666666666666665555443
No 69
>PRK00571 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=33.57 E-value=1.7e+02 Score=20.62 Aligned_cols=81 Identities=5% Similarity=0.038 Sum_probs=47.8
Q ss_pred eEEEEecCCCcc---ccceeEeeccCCCCCCCCcEEeEEE-cCCcccccCCCCCc--ccceeEEEecCcccCCCCChhhH
Q psy3418 14 TYILVRSKNASV---PASCKIVIEASPLTPHVVATLPPIL-CTIPYFTNDKTKKF--DSGRNVISILPPIPTEGLTKDNV 87 (119)
Q Consensus 14 ~~~~~~~~~~~~---~~~~k~~~~~~~~~ka~vPIVPVvI-~gt~~i~p~k~~~~--~PG~V~V~IlpPI~t~glt~edi 87 (119)
.++.++..+|.+ |+=+-+++. ...-++=+.. .|..+.+--..+++ .+..|.|-.-..+..++++.+..
T Consensus 21 ~~v~~~~~~G~~gILp~H~p~it~------L~~G~l~i~~~~~~~~~~~v~gG~~~v~~n~v~Ila~~a~~~~~id~~~a 94 (135)
T PRK00571 21 EEVVVPGTEGELGILPGHAPLLTA------LKPGVVRIKKDDGEEEVIAVSGGFLEVQPDKVTVLADSAERADDIDEARA 94 (135)
T ss_pred EEEEEEcCccCeeecCCCcceEEE------eeceEEEEEECCCcEEEEEEccEEEEEECCEEEEEEeeEEEhhhCCHHHH
Confidence 456788888887 666666633 2222333333 12211111112222 67778888888888888887777
Q ss_pred HHHHHHHHHHHHH
Q psy3418 88 NDLMDRTYKAMSE 100 (119)
Q Consensus 88 ~~L~e~vr~~m~~ 100 (119)
++..++..+.+.+
T Consensus 95 ~~~~~~ae~~l~~ 107 (135)
T PRK00571 95 EEAKERAEEALEN 107 (135)
T ss_pred HHHHHHHHHHHhh
Confidence 7777777776654
No 70
>PRK00539 atpC F0F1 ATP synthase subunit epsilon; Validated
Probab=32.81 E-value=1.9e+02 Score=20.75 Aligned_cols=81 Identities=5% Similarity=-0.085 Sum_probs=50.1
Q ss_pred eEEEEecCCCcc---ccceeEeeccCCCCCCCCcEEeEEE-cCCcccccCCCCCc--ccceeEEEecCcccCCCCChhhH
Q psy3418 14 TYILVRSKNASV---PASCKIVIEASPLTPHVVATLPPIL-CTIPYFTNDKTKKF--DSGRNVISILPPIPTEGLTKDNV 87 (119)
Q Consensus 14 ~~~~~~~~~~~~---~~~~k~~~~~~~~~ka~vPIVPVvI-~gt~~i~p~k~~~~--~PG~V~V~IlpPI~t~glt~edi 87 (119)
.++.++..+|.+ |+-+-|+ +..+.-++=+.. .+.+..+--..+|+ .+..|+|-.-.....++.+.+..
T Consensus 21 ~~V~l~t~~G~~gIL~~Hapli------t~L~~G~~~i~~~~~~~~~~~v~gGf~ev~~n~v~Ilad~ae~~eeID~~~a 94 (133)
T PRK00539 21 ISAQVKTTEGYAGLNRNRAPLI------AAIQSHVCKITFADKTKRSAIIGAGLLLIKKTEAKIFTENFVFADELDYDET 94 (133)
T ss_pred EEEEEecCccCceecCCCcceE------eEecceEEEEEECCCcEEEEEEeeeEEEEECCEEEEEECeEEchhhCCHHHH
Confidence 356778888887 7777777 222333333333 33322222222333 77888888888888888887777
Q ss_pred HHHHHHHHHHHHH
Q psy3418 88 NDLMDRTYKAMSE 100 (119)
Q Consensus 88 ~~L~e~vr~~m~~ 100 (119)
++-.++..+.+.+
T Consensus 95 ~~a~erAe~~L~~ 107 (133)
T PRK00539 95 LKRKKELERKIKH 107 (133)
T ss_pred HHHHHHHHHHHHh
Confidence 7777777777654
No 71
>PRK13683 hypothetical protein; Provisional
Probab=32.26 E-value=21 Score=24.51 Aligned_cols=25 Identities=20% Similarity=0.371 Sum_probs=16.9
Q ss_pred cccCCCCChhhHHHHHHHHHHHHHH
Q psy3418 76 PIPTEGLTKDNVNDLMDRTYKAMSE 100 (119)
Q Consensus 76 PI~t~glt~edi~~L~e~vr~~m~~ 100 (119)
||+.+....+|.+.|-+++++.|++
T Consensus 14 P~SVQRKe~edA~alYq~I~~am~s 38 (87)
T PRK13683 14 PISVQRKEAEDAEALYQQIRQAMRS 38 (87)
T ss_pred ceEEEeccHHHHHHHHHHHHHHHhc
Confidence 4666666667777777777777755
No 72
>PRK13448 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=31.53 E-value=2e+02 Score=20.64 Aligned_cols=81 Identities=4% Similarity=-0.127 Sum_probs=47.3
Q ss_pred eEEEEecCCCcc---ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCC--cccceeEEEecCcccCCCCChhhHH
Q psy3418 14 TYILVRSKNASV---PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKK--FDSGRNVISILPPIPTEGLTKDNVN 88 (119)
Q Consensus 14 ~~~~~~~~~~~~---~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~--~~PG~V~V~IlpPI~t~glt~edi~ 88 (119)
.++.+|+.+|.+ |+=+-++. ..+.-++=+...+..+.+--..++ +.+..+.|-.-.....++.+.+..+
T Consensus 21 ~~V~~p~~~G~~gILp~H~p~it------~L~pG~v~i~~~~~~~~~~v~gGf~eV~~~~v~Ila~~a~~~~dID~~~a~ 94 (135)
T PRK13448 21 DQVDIPGVEGDFGVLAGHAPVVA------VIRPGILTVTAGGNQQKIVVLGGLAEVSEKGLTVLADVATSVADLDLAQFA 94 (135)
T ss_pred EEEEEEcCccCeEEcCCCcceEe------EeccEEEEEEECCcEEEEEEeccEEEEECCEEEEEEeeeEEcccCCHHHHH
Confidence 467788888887 66666662 222223333222322111112233 3677788888888888888777766
Q ss_pred HHHHHHHHHHHH
Q psy3418 89 DLMDRTYKAMSE 100 (119)
Q Consensus 89 ~L~e~vr~~m~~ 100 (119)
+-.++.++.+.+
T Consensus 95 ~~~~~Ae~~l~~ 106 (135)
T PRK13448 95 ATIAEMEAQLAG 106 (135)
T ss_pred HHHHHHHHHHhh
Confidence 666666666554
No 73
>PRK12654 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=30.86 E-value=75 Score=23.72 Aligned_cols=40 Identities=10% Similarity=0.180 Sum_probs=28.5
Q ss_pred cccceeEEEecCc--------ccCCCCChhhHHHHHHHHHHHHHHHHHh
Q psy3418 64 FDSGRNVISILPP--------IPTEGLTKDNVNDLMDRTYKAMSEEYEK 104 (119)
Q Consensus 64 ~~PG~V~V~IlpP--------I~t~glt~edi~~L~e~vr~~m~~~L~~ 104 (119)
+-||++.+.+.+. +....+..+|.+++.+.+++ |++.+..
T Consensus 59 LTPGTlsldv~~d~~~~~~~~LlVHaLd~~d~e~~~~~Ik~-~E~~L~~ 106 (151)
T PRK12654 59 ATPGTLSLGLREPRKPGDPRILLVQAVFGSDPVSVLADIAD-MEERLAP 106 (151)
T ss_pred cCCCeEEEEecCCCCcCcCceEEEEeccCCCHHHHHHHHHH-HHHHHHH
Confidence 3899999999874 55566666777777777777 6665543
No 74
>TIGR03544 DivI1A_domain DivIVA domain. This model describes a domain found in Bacillus subtilis cell division initiation protein DivIVA, and homologs, toward the N-terminus. It is also found as a repeated domain in certain other proteins, including family TIGR03543.
Probab=29.28 E-value=53 Score=18.05 Aligned_cols=18 Identities=22% Similarity=0.458 Sum_probs=15.8
Q ss_pred CCCChhhHHHHHHHHHHH
Q psy3418 80 EGLTKDNVNDLMDRTYKA 97 (119)
Q Consensus 80 ~glt~edi~~L~e~vr~~ 97 (119)
.||..++++.+.++|.+.
T Consensus 16 rGY~~~eVD~fLd~v~~~ 33 (34)
T TIGR03544 16 RGYDAAEVDAFLDRVADD 33 (34)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 799999999999998764
No 75
>TIGR01216 ATP_synt_epsi ATP synthase, F1 epsilon subunit (delta in mitochondria). This model describes one of the five types of subunits in the F1 part of F1/F0 ATP synthases. Members of this family are designated epsilon in bacterial and chloroplast systems but designated delta in mitochondria, where the counterpart of the bacterial delta subunit is designated OSCP. In a few cases (Propionigenium modestum, Acetobacterium woodii) scoring above the trusted cutoff and designated here as exceptions, Na+ replaces H+ for translocation.
Probab=28.74 E-value=2.1e+02 Score=20.09 Aligned_cols=36 Identities=6% Similarity=0.125 Sum_probs=27.9
Q ss_pred ccceeEEEecCcccCCCCChhhHHHHHHHHHHHHHH
Q psy3418 65 DSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSE 100 (119)
Q Consensus 65 ~PG~V~V~IlpPI~t~glt~edi~~L~e~vr~~m~~ 100 (119)
.++.|.|-....+..++++.+...+..++.++.+.+
T Consensus 70 ~~~~v~Il~~~a~~~~~id~~~a~~~~~~ae~~l~~ 105 (130)
T TIGR01216 70 QPDKVTILADGAVFADDIDEAEAEKALEAAEKLLES 105 (130)
T ss_pred ECCEEEEEEeEEEEcccCCHHHHHHHHHHHHHHHhh
Confidence 667888888888888888877777777777776654
No 76
>PRK12651 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=28.66 E-value=75 Score=23.26 Aligned_cols=41 Identities=2% Similarity=0.089 Sum_probs=26.1
Q ss_pred CcccceeEEEecCc---ccCCCCChhhHHHHHHHHHHHHHHHHH
Q psy3418 63 KFDSGRNVISILPP---IPTEGLTKDNVNDLMDRTYKAMSEEYE 103 (119)
Q Consensus 63 ~~~PG~V~V~IlpP---I~t~glt~edi~~L~e~vr~~m~~~L~ 103 (119)
-+-||++.+.+.+. +....++.+|.++..+++++.++..+.
T Consensus 111 TLtPGTl~vdv~~~~~~l~VH~l~~~~~~~~~~~i~~~~E~~l~ 154 (158)
T PRK12651 111 TLTPGTLTLDVSDDRKKLYIHAIDVKDKEEEIREIKDSFEKILL 154 (158)
T ss_pred cCCCCeEEEEEeCCCCEEEEEEeeCCCHHHHHHHHHHHHHHHHH
Confidence 34899999998664 444555555655666666655555444
No 77
>PRK06228 F0F1 ATP synthase subunit epsilon; Validated
Probab=28.49 E-value=2.2e+02 Score=20.36 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=38.9
Q ss_pred eEEEEecCCCcc---ccceeEeeccCCCCCCCCcEEeEEE-cCCcccccCCCCCc--ccceeEEEecCcccCCCCChhhH
Q psy3418 14 TYILVRSKNASV---PASCKIVIEASPLTPHVVATLPPIL-CTIPYFTNDKTKKF--DSGRNVISILPPIPTEGLTKDNV 87 (119)
Q Consensus 14 ~~~~~~~~~~~~---~~~~k~~~~~~~~~ka~vPIVPVvI-~gt~~i~p~k~~~~--~PG~V~V~IlpPI~t~glt~edi 87 (119)
.++.+++.+|++ |+=+-+++. ...-++=+.- .+..+.+--..+++ .+..|.|-.-..... +|+
T Consensus 21 ~~V~lpt~~G~~GILp~H~p~it~------L~~G~l~i~~~~~~~~~~av~gGf~ev~~n~V~Ilad~ae~~-----edi 89 (131)
T PRK06228 21 TRIVAETREGSFGLLPHRLDCVAA------LVPGILVYETEAEGEVYVAVDEGILVKTGPDVLVSVRNAIGG-----TDL 89 (131)
T ss_pred EEEEEEcCccCeEECCCCcceEee------ecceEEEEEECCCcEEEEEEcceEEEEECCEEEEEEceeEch-----hhH
Confidence 577888899888 777777722 2222222222 22222222222333 667777777666544 455
Q ss_pred HHHHHHHHHH
Q psy3418 88 NDLMDRTYKA 97 (119)
Q Consensus 88 ~~L~e~vr~~ 97 (119)
+++.+.+++.
T Consensus 90 d~~~~~l~~~ 99 (131)
T PRK06228 90 GELREAVEQE 99 (131)
T ss_pred HHHHHHHHHH
Confidence 5555555555
No 78
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=28.10 E-value=1.7e+02 Score=25.17 Aligned_cols=63 Identities=17% Similarity=0.305 Sum_probs=40.8
Q ss_pred CCCCcEEeEEEcCCcccccCCCCCc----ccceeEEEec---------CcccCCCCChhhHHHHHHHHHHHHHHHHHh
Q psy3418 40 PHVVATLPPILCTIPYFTNDKTKKF----DSGRNVISIL---------PPIPTEGLTKDNVNDLMDRTYKAMSEEYEK 104 (119)
Q Consensus 40 ka~vPIVPVvI~gt~~i~p~k~~~~----~PG~V~V~Il---------pPI~t~glt~edi~~L~e~vr~~m~~~L~~ 104 (119)
.++++.+||++.-.. |..-.+.+ .-|.+.|.+| ||..+.+.+.+++++-+.++++.|.+.-..
T Consensus 323 sA~l~~~PVal~v~~--~~~~~G~IV~Ls~~G~L~v~YLGTdPs~~~~p~~~~r~~~y~~~~~E~~~l~~~Ir~~~~~ 398 (418)
T PF14727_consen 323 SAQLPHVPVALSVAN--FNGLKGLIVSLSDEGQLSVSYLGTDPSLFQVPPLESREIDYEELEEELKELEKEIRESQSS 398 (418)
T ss_pred ecCCCCCCEEEEecc--cCCCCceEEEEcCCCcEEEEEeCCCCccccCCCcccccCCHHHHHHHHHHHHHHHHhhhcc
Confidence 477899999997652 23222333 4688887775 455556677777777777777777665433
No 79
>KOG1359|consensus
Probab=27.79 E-value=51 Score=28.06 Aligned_cols=55 Identities=15% Similarity=0.211 Sum_probs=27.8
Q ss_pred CCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCC-----------CCChhhHHHHHHHH
Q psy3418 40 PHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTE-----------GLTKDNVNDLMDRT 94 (119)
Q Consensus 40 ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~-----------glt~edi~~L~e~v 94 (119)
-+.-||.||.+-+.+.........+..|--.+-|.+|+=++ ..+++|++.+.+..
T Consensus 341 g~~hPI~pv~lGda~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af 406 (417)
T KOG1359|consen 341 GASHPICPVMLGDARLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAF 406 (417)
T ss_pred CCCCCccceecccHHHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHH
Confidence 34579999998876544333222223333333333333222 23556776666544
No 80
>PRK13444 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=27.07 E-value=2.3e+02 Score=19.96 Aligned_cols=80 Identities=10% Similarity=-0.007 Sum_probs=44.8
Q ss_pred eEEEEecCCCcc---ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCc--ccceeEEEecCcccCCCCChhhHH
Q psy3418 14 TYILVRSKNASV---PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKF--DSGRNVISILPPIPTEGLTKDNVN 88 (119)
Q Consensus 14 ~~~~~~~~~~~~---~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~--~PG~V~V~IlpPI~t~glt~edi~ 88 (119)
.++.+++.+|.+ |+=+-+++- .+.=++=+...+....+--..+++ .+..|.|-.-.....++++.+...
T Consensus 23 ~~V~~p~~~G~~gILp~H~p~it~------L~~G~l~i~~~~~~~~~~v~gG~~~v~~~~v~Il~~~a~~~~diD~~~a~ 96 (127)
T PRK13444 23 DSLIVPGSEGFFGILPNHAPLVAT------LGIGLLEIRKGEKLKRISVEGGFCEVKDNQISILTDHGALKEDIDHEHEK 96 (127)
T ss_pred EEEEEECCccCeEecCCCcCeEeE------eccEEEEEEECCeEEEEEEeceEEEEECCEEEEEEeEEEehhhCCHHHHH
Confidence 457788888887 666666632 122222222223211121112233 667788888888888888776666
Q ss_pred HHHHHHHHHHH
Q psy3418 89 DLMDRTYKAMS 99 (119)
Q Consensus 89 ~L~e~vr~~m~ 99 (119)
+-.++..+.+.
T Consensus 97 ~~~~~Ae~~l~ 107 (127)
T PRK13444 97 KLLAEAEKLPP 107 (127)
T ss_pred HHHHHHHHHHh
Confidence 66666666664
No 81
>PRK14735 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=26.88 E-value=2.4e+02 Score=20.22 Aligned_cols=81 Identities=10% Similarity=-0.010 Sum_probs=46.4
Q ss_pred eEEEEecCCCcc---ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCc--ccceeEEEecCcccCCCCChhhHH
Q psy3418 14 TYILVRSKNASV---PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKF--DSGRNVISILPPIPTEGLTKDNVN 88 (119)
Q Consensus 14 ~~~~~~~~~~~~---~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~--~PG~V~V~IlpPI~t~glt~edi~ 88 (119)
.++.++..+|.+ |+=.-+++- ...-++=+...|.+..+--..+++ .+..|.|-.-..+..++++.+...
T Consensus 20 ~~V~~p~~~G~~gILp~H~P~it~------L~~G~v~i~~~g~~~~~~v~gGf~ev~~~~v~Ila~~a~~~edID~~~a~ 93 (139)
T PRK14735 20 DMISAPTKDGRVGILPRHAPLLTI------LEPGELDIVKNGVRTPFAISGGFMEVLPHRVTILADTAERADEIDEARAE 93 (139)
T ss_pred EEEEEecCccCeeEcCCCcceEEE------ecceEEEEEECCeEEEEEEcccEEEEeCCEEEEEeeeEEEcccCCHHHHH
Confidence 457778888887 555555522 111122222223222121122233 777888888888888888877777
Q ss_pred HHHHHHHHHHHH
Q psy3418 89 DLMDRTYKAMSE 100 (119)
Q Consensus 89 ~L~e~vr~~m~~ 100 (119)
+..++..+.+.+
T Consensus 94 ~a~e~Ae~~l~~ 105 (139)
T PRK14735 94 QARAEAEQRRRE 105 (139)
T ss_pred HHHHHHHHHHHh
Confidence 777777666644
No 82
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=25.40 E-value=1.5e+02 Score=17.41 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=19.8
Q ss_pred CCCChhhHHHHHHHHHHHHHHHHH
Q psy3418 80 EGLTKDNVNDLMDRTYKAMSEEYE 103 (119)
Q Consensus 80 ~glt~edi~~L~e~vr~~m~~~L~ 103 (119)
+|.+.+...+|.+.+.+.+.+.+.
T Consensus 10 ~Grs~eqk~~l~~~it~~l~~~~~ 33 (61)
T PRK02220 10 EGRTEEQLKALVKDVTAAVSKNTG 33 (61)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHhC
Confidence 367888899999999998888764
No 83
>PRK13450 atpC F0F1 ATP synthase subunit epsilon; Provisional
Probab=25.13 E-value=2.5e+02 Score=19.85 Aligned_cols=79 Identities=6% Similarity=-0.017 Sum_probs=46.4
Q ss_pred eEEEEecCCCcc---ccceeEeeccCCCCCCCCcEEeEEE-cCCcccccCCCCCc--ccceeEEEecCcccCCCCChhhH
Q psy3418 14 TYILVRSKNASV---PASCKIVIEASPLTPHVVATLPPIL-CTIPYFTNDKTKKF--DSGRNVISILPPIPTEGLTKDNV 87 (119)
Q Consensus 14 ~~~~~~~~~~~~---~~~~k~~~~~~~~~ka~vPIVPVvI-~gt~~i~p~k~~~~--~PG~V~V~IlpPI~t~glt~edi 87 (119)
.++.++..+|.+ ||-+-+++. .+.-++=+.. ++....+--..+++ .+..|.|-.-..+..++.+.+..
T Consensus 21 ~~V~~p~~~G~~GILp~H~p~it~------L~~G~l~i~~~~~~~~~~~v~gGf~~v~~~~v~Il~~~a~~~~~ID~~~a 94 (132)
T PRK13450 21 KEVITEGLDGDIAILPNHVPLITY------LKPTITKIIDENGEKKKIFTSSGVLKVENNEVYILCDASEWPEEIDIKRA 94 (132)
T ss_pred EEEEEECCccCceecCCCcccEeE------EccEEEEEEECCCcEEEEEEcCeEEEEECCEEEEEehhhcccccCCHHHH
Confidence 467788888888 776666633 2222332322 22222222122333 67778888888888888877666
Q ss_pred HHHHHHHHHHH
Q psy3418 88 NDLMDRTYKAM 98 (119)
Q Consensus 88 ~~L~e~vr~~m 98 (119)
++..++..+.+
T Consensus 95 ~~~~~~A~~~l 105 (132)
T PRK13450 95 ENAKKRAEERL 105 (132)
T ss_pred HHHHHHHHHHH
Confidence 66666666655
No 84
>PF06831 H2TH: Formamidopyrimidine-DNA glycosylase H2TH domain; InterPro: IPR015886 This entry represents a helix-2turn-helix DNA-binding domain found in DNA glycosylase/AP lyase enzymes, which are involved in base excision repair of DNA damaged by oxidation or by mutagenic agents. Most damage to bases in DNA is repaired by the base excision repair pathway []. These enzymes are primarily from bacteria, and have both DNA glycosylase activity (3.2.2 from EC) and AP lyase activity (4.2.99.18 from EC). Examples include formamidopyrimidine-DNA glycosylases (Fpg; MutM) and endonuclease VIII (Nei). Formamidopyrimidine-DNA glycosylases (Fpg, MutM) is a trifunctional DNA base excision repair enzyme that removes a wide range of oxidation-damaged bases (N-glycosylase activity; 3.2.2.23 from EC) and cleaves both the 3'- and 5'-phosphodiester bonds of the resulting apurinic/apyrimidinic site (AP lyase activity; 4.2.99.18 from EC). Fpg has a preference for oxidised purines, excising oxidized purine bases such as 7,8-dihydro-8-oxoguanine (8-oxoG). ITs AP (apurinic/apyrimidinic) lyase activity introduces nicks in the DNA strand, cleaving the DNA backbone by beta-delta elimination to generate a single-strand break at the site of the removed base with both 3'- and 5'-phosphates. Fpg is a monomer composed of 2 domains connected by a flexible hinge []. The two DNA-binding motifs (a zinc finger and the helix-two-turns-helix motifs) suggest that the oxidized base is flipped out from double-stranded DNA in the binding mode and excised by a catalytic mechanism similar to that of bifunctional base excision repair enzymes []. Fpg binds one ion of zinc at the C terminus, which contains four conserved and essential cysteines [, ]. Endonuclease VIII (Nei) has the same enzyme activities as Fpg above (3.2.2 from EC, 4.2.99.18 from EC), but with a preference for oxidized pyrimidines, such as thymine glycol, 5,6-dihydrouracil and 5,6-dihydrothymine []. These protein contains three structural domains: an N-terminal catalytic core domain, a central helix-two turn-helix (H2TH) module and a C-terminal zinc finger []. The N-terminal catalytic domain and the C-terminal zinc finger straddle the DNA with the long axis of the protein oriented roughly orthogonal to the helical axis of the DNA. Residues that contact DNA are located in the catalytic domain and in a beta-hairpin loop formed by the zinc finger []. This entry represents the central domain containing the DNA-binding helix-two turn-helix domain [].; GO: 0003684 damaged DNA binding, 0003906 DNA-(apurinic or apyrimidinic site) lyase activity, 0008270 zinc ion binding, 0016799 hydrolase activity, hydrolyzing N-glycosyl compounds, 0006289 nucleotide-excision repair; PDB: 3GQ3_A 3JR5_A 3SAT_A 3GPX_A 2F5Q_A 3SBJ_A 3U6S_A 3SAU_A 3SAR_A 2F5P_A ....
Probab=24.98 E-value=76 Score=21.22 Aligned_cols=34 Identities=21% Similarity=0.389 Sum_probs=27.9
Q ss_pred EEecCcccCCCCChhhHHHHHHHHHHHHHHHHHh
Q psy3418 71 ISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEK 104 (119)
Q Consensus 71 V~IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~ 104 (119)
..+||--....++.++...|.+.++..+..+++.
T Consensus 51 a~i~P~~~~~~L~~~~~~~l~~~~~~vl~~ai~~ 84 (92)
T PF06831_consen 51 AGIHPERPASSLSEEELRRLHEAIKRVLREAIEV 84 (92)
T ss_dssp TTB-TTSBGGGSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCCccCccccCCHHHHHHHHHHHHHHHHHHHHc
Confidence 3467777778899999999999999999998864
No 85
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=23.36 E-value=70 Score=25.29 Aligned_cols=66 Identities=18% Similarity=0.098 Sum_probs=30.4
Q ss_pred EEeEEEcCCcccccCCCCC-cccceeEEE----ecCcccCCCCChhhHHHHHHHHHHHHHHHHHhhcccCC
Q psy3418 45 TLPPILCTIPYFTNDKTKK-FDSGRNVIS----ILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKITKENT 110 (119)
Q Consensus 45 IVPVvI~gt~~i~p~k~~~-~~PG~V~V~----IlpPI~t~glt~edi~~L~e~vr~~m~~~L~~l~~~~~ 110 (119)
++||..+|.+.+-.+-..- .....+.-+ =.+++..+|-+.+++.+.+.++.+...+.+..++..++
T Consensus 115 vLpIld~Ng~~i~~pt~~~~~~~e~l~~~~~~yG~~~~~VDG~D~~av~~~~a~a~~~~~~~i~~~~~~~~ 185 (227)
T cd02011 115 VLPILHLNGYKISNPTILARISHEELEALFRGYGYEPYFVEGDDPETMHQAMAATLDWAIEEIKAIQKRAR 185 (227)
T ss_pred eEEEEEcCCCcccCCccccccCchhHHHHHHhCCCceEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788887766554432211 101111100 02344456665555555555555555555555554433
No 86
>COG0355 AtpC F0F1-type ATP synthase, epsilon subunit (mitochondrial delta subunit) [Energy production and conversion]
Probab=22.86 E-value=3e+02 Score=19.87 Aligned_cols=75 Identities=11% Similarity=0.133 Sum_probs=50.7
Q ss_pred eEEEEecCCCcc--------------ccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccC
Q psy3418 14 TYILVRSKNASV--------------PASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPT 79 (119)
Q Consensus 14 ~~~~~~~~~~~~--------------~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t 79 (119)
+++.+|...|.+ ||-+++.-+ ..+-. ..++++|. ++. +.|..|.|-.-..+..
T Consensus 21 ~~V~~~t~eGe~GILp~H~Plit~Lk~g~v~i~~~-----~~~~~-~~i~VsgG--fle-----V~~~~vtIlad~A~~~ 87 (135)
T COG0355 21 KSVVVPTTEGELGILPGHAPLITALKPGVVRIKTE-----DGDKE-EKIAVSGG--FLE-----VQPNEVTILADSAERA 87 (135)
T ss_pred EEEEEecCCeeeecCCCCccceeeecCcEEEEEEc-----CCCce-EEEEEecc--EEE-----EeCCEEEEEEceeEec
Confidence 577888888887 566666522 11222 56666664 222 3788888888888988
Q ss_pred CCCChhhHHHHHHHHHHHHHHH
Q psy3418 80 EGLTKDNVNDLMDRTYKAMSEE 101 (119)
Q Consensus 80 ~glt~edi~~L~e~vr~~m~~~ 101 (119)
++++.+...+..++....+.+.
T Consensus 88 ~did~~~a~~~~~~ae~~l~~~ 109 (135)
T COG0355 88 DDIDEARAEEAKERAEKELESA 109 (135)
T ss_pred ccCCHHHHHHHHHHHHHHHHhc
Confidence 8898877777777777766543
No 87
>PLN02955 8-amino-7-oxononanoate synthase
Probab=22.70 E-value=78 Score=27.69 Aligned_cols=57 Identities=16% Similarity=0.229 Sum_probs=30.9
Q ss_pred CCcEEeEEEcCCcccccCCCCCcccceeEEEecCcc-----------cCCCCChhhHHHHHHHHHHHH
Q psy3418 42 VVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPI-----------PTEGLTKDNVNDLMDRTYKAM 98 (119)
Q Consensus 42 ~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI-----------~t~glt~edi~~L~e~vr~~m 98 (119)
.-||+||.+.+....+......+..|-...-|.+|- -+...+.+|++.|.+.+.+.+
T Consensus 392 ~sPI~pI~ig~~~~a~~~~~~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~ 459 (476)
T PLN02955 392 SSPIISLVVGNQEKALKASRYLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCL 459 (476)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHH
Confidence 489999999875443321111112232222222221 134567788888888876654
No 88
>TIGR02744 TrbI_Ftype type-F conjugative transfer system protein TrbI. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=22.38 E-value=1.4e+02 Score=21.28 Aligned_cols=32 Identities=13% Similarity=0.220 Sum_probs=28.0
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhhcccCC
Q psy3418 79 TEGLTKDNVNDLMDRTYKAMSEEYEKITKENT 110 (119)
Q Consensus 79 t~glt~edi~~L~e~vr~~m~~~L~~l~~~~~ 110 (119)
-+++++++.+.+.++..+.+.+.|.+++.++.
T Consensus 52 ~~~lte~q~~~~~~rF~~~L~~~L~~yq~~H~ 83 (112)
T TIGR02744 52 QKKLSEAQQKALLGRFNALLEAELQAWQAQHH 83 (112)
T ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 36789999999999999999999999987754
No 89
>PRK13717 conjugal transfer protein TrbI; Provisional
Probab=22.21 E-value=1.4e+02 Score=21.79 Aligned_cols=32 Identities=13% Similarity=0.200 Sum_probs=27.9
Q ss_pred CCCCChhhHHHHHHHHHHHHHHHHHhhcccCC
Q psy3418 79 TEGLTKDNVNDLMDRTYKAMSEEYEKITKENT 110 (119)
Q Consensus 79 t~glt~edi~~L~e~vr~~m~~~L~~l~~~~~ 110 (119)
-.++++++.++|.++..+.+.+.|.++..++.
T Consensus 65 ~~~lte~q~e~lt~rF~~aL~~~L~~yq~~H~ 96 (128)
T PRK13717 65 QKQLSEAQSKALSARFNTALEASLQAWQQKHH 96 (128)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 35788899999999999999999999987654
No 90
>COG1029 FwdB Formylmethanofuran dehydrogenase subunit B [Energy production and conversion]
Probab=22.15 E-value=87 Score=27.10 Aligned_cols=48 Identities=8% Similarity=0.308 Sum_probs=31.6
Q ss_pred EEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhh-HHHHHHHHHH
Q psy3418 45 TLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDN-VNDLMDRTYK 96 (119)
Q Consensus 45 IVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~ed-i~~L~e~vr~ 96 (119)
|+|-+|.| |....-+.+---|.|++-|-+++.-++.++ +++|.+++++
T Consensus 379 viP~aI~g----mE~~GTayRmD~V~v~~k~~~es~~~sde~iLk~l~ekv~e 427 (429)
T COG1029 379 VIPSAIDG----MEAEGTAYRMDGVPVRMKPVVESKTLSDEEILKKLLEKVKE 427 (429)
T ss_pred ecccceee----eeccceEEeecCceEeeEecccccccChHHHHHHHHHHHhh
Confidence 55666665 344444456677889998999987776644 5556666654
No 91
>PRK02048 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Provisional
Probab=21.60 E-value=2.5e+02 Score=25.58 Aligned_cols=64 Identities=9% Similarity=0.092 Sum_probs=40.5
Q ss_pred ecCCCccccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCc--ccceeEEEecCcccCCCCChhh-HHHHHHHHH
Q psy3418 19 RSKNASVPASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKF--DSGRNVISILPPIPTEGLTKDN-VNDLMDRTY 95 (119)
Q Consensus 19 ~~~~~~~~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~--~PG~V~V~IlpPI~t~glt~ed-i~~L~e~vr 95 (119)
|.+++-+|| .||+ |.=..+||-.++-..+.++. .||+|.+.++.-.=-++...++ +++|.+.++
T Consensus 539 k~~t~HLkG-lkI~------------IMGCIVNGPGEMADADfGYVG~gpgkI~LY~gke~V~~nIp~e~Avd~Li~LIk 605 (611)
T PRK02048 539 KEATSHLKG-LKIG------------IMGCIVNGPGEMADADYGYVGAGRGKISLYKQKECVEKNIPEEEAVERLIELIK 605 (611)
T ss_pred HHHhCCCCC-ceEE------------EEEeEecCCchhhhcccceecCCCCeEEEEeccEEEecCCCHHHHHHHHHHHHH
Confidence 555666676 7777 44445577655444444555 7899999999886556666544 444554443
No 92
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=21.12 E-value=1.6e+02 Score=17.39 Aligned_cols=23 Identities=17% Similarity=0.260 Sum_probs=18.7
Q ss_pred CCChhhHHHHHHHHHHHHHHHHH
Q psy3418 81 GLTKDNVNDLMDRTYKAMSEEYE 103 (119)
Q Consensus 81 glt~edi~~L~e~vr~~m~~~L~ 103 (119)
|.+.+...+|.+.+.+.+.+.+.
T Consensus 11 grs~eqk~~l~~~it~~l~~~~~ 33 (62)
T PRK00745 11 GRTVEQKRKLVEEITRVTVETLG 33 (62)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcC
Confidence 56778888899999988888764
No 93
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=21.01 E-value=68 Score=26.22 Aligned_cols=30 Identities=17% Similarity=0.215 Sum_probs=24.4
Q ss_pred ecCcccCCCCChhhHHHHHHHHHHHHHHHH
Q psy3418 73 ILPPIPTEGLTKDNVNDLMDRTYKAMSEEY 102 (119)
Q Consensus 73 IlpPI~t~glt~edi~~L~e~vr~~m~~~L 102 (119)
|..|-+.+.++.+++++|.+++|+.+.+..
T Consensus 4 I~~p~dlk~ls~~eL~~La~eiR~~ii~~v 33 (270)
T PF13292_consen 4 INSPEDLKKLSIEELEQLAQEIREFIIETV 33 (270)
T ss_dssp -SSHHHHTTS-GGGHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHcCCHHHHHHHHHHHHHHHHHHH
Confidence 556778889999999999999999988764
No 94
>PRK06733 hypothetical protein; Provisional
Probab=20.99 E-value=1.5e+02 Score=22.14 Aligned_cols=77 Identities=14% Similarity=0.162 Sum_probs=44.1
Q ss_pred EEEEecCCCccccceeEeeccCCCCCCCCcEEeEEEcCCcccccCCCCCcccceeEEEecCcccCCCCChhhHHHHHHHH
Q psy3418 15 YILVRSKNASVPASCKIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRT 94 (119)
Q Consensus 15 ~~~~~~~~~~~~~~~k~~~~~~~~~ka~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~IlpPI~t~glt~edi~~L~e~v 94 (119)
++..-...=+|+|.+++.-| +-.++| +++++..- ++=.-+...|+-++|. --|++ .+-++.+-..+|-++|
T Consensus 74 ~~~~~~~~yqIkG~a~i~~e----~ie~vp-lk~s~vei-~I~eVrdv~FyGa~i~--~~p~~-~ktyd~~~a~~LD~~v 144 (151)
T PRK06733 74 TIIANESVYSISGAAEILTD----RMEGVP-LKLALIEV-NVEEVRDVMFYGAKIA--TEPTY-EKTYDLRAAAKLDNQV 144 (151)
T ss_pred EEEeCCcEEEEEEEEEEEee----eccccc-ceEEEEEE-EEEEEEEeeeccceec--cCCce-eeccCHHHHHHHHHHH
Confidence 34433333677999999977 445666 44554333 2333334455555643 33444 3556666666777777
Q ss_pred HHHHHH
Q psy3418 95 YKAMSE 100 (119)
Q Consensus 95 r~~m~~ 100 (119)
.+.|.+
T Consensus 145 ~~alk~ 150 (151)
T PRK06733 145 LVALKE 150 (151)
T ss_pred HHHHhc
Confidence 777654
No 95
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=20.98 E-value=1.7e+02 Score=16.85 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=18.2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHH
Q psy3418 81 GLTKDNVNDLMDRTYKAMSEEYE 103 (119)
Q Consensus 81 glt~edi~~L~e~vr~~m~~~L~ 103 (119)
|.+.+...+|.+.+.+.+.+.+.
T Consensus 10 grt~eqk~~l~~~i~~~l~~~~g 32 (58)
T cd00491 10 GRTDEQKRELIERVTEAVSEILG 32 (58)
T ss_pred CCCHHHHHHHHHHHHHHHHHHhC
Confidence 45668888899999988888763
No 96
>COG1156 NtpB Archaeal/vacuolar-type H+-ATPase subunit B [Energy production and conversion]
Probab=20.83 E-value=1.5e+02 Score=26.11 Aligned_cols=62 Identities=29% Similarity=0.345 Sum_probs=46.1
Q ss_pred CCCcEEeEEEcCCcccccCCCCCcccceeEEE-------ecCcccC-------------CCCChhhHHHHHHHHHHHHHH
Q psy3418 41 HVVATLPPILCTIPYFTNDKTKKFDSGRNVIS-------ILPPIPT-------------EGLTKDNVNDLMDRTYKAMSE 100 (119)
Q Consensus 41 a~vPIVPVvI~gt~~i~p~k~~~~~PG~V~V~-------IlpPI~t-------------~glt~edi~~L~e~vr~~m~~ 100 (119)
+|+||+=+=-.+..+-.|.....+.-|.|.+. |-|||+. +|.+++|...++++.+....+
T Consensus 301 TqipIlTMP~DDITHPIPDlTGYITEGQivl~r~l~~~gIyPpi~vlpSLSRL~~~giG~g~TReDH~~~snql~a~YA~ 380 (463)
T COG1156 301 TQIPILTMPGDDITHPIPDLTGYITEGQIVLSRDLHRKGIYPPINVLPSLSRLMKDGIGEGKTREDHGDVSNQLYAAYAE 380 (463)
T ss_pred EEEEeeecCCCCcCCCCCcccceeccceEEEEhhcccCCcCCCccccccHHHHhhcccCCCccccccHHHHHHHHHHHhc
Confidence 56778777777777778887888888888887 5566643 566888888888888877665
Q ss_pred HH
Q psy3418 101 EY 102 (119)
Q Consensus 101 ~L 102 (119)
..
T Consensus 381 g~ 382 (463)
T COG1156 381 GR 382 (463)
T ss_pred ch
Confidence 43
No 97
>cd00591 HU_IHF Integration host factor (IHF) and HU are small heterodimeric members of the DNABII protein family that bind and bend DNA, functioning as architectural factors in many cellular processes including transcription, site-specific recombination, and higher-order nucleoprotein complex assembly. The dimer subunits associate to form a compact globular core from which two beta ribbon arms (one from each subunit) protrude. The beta arms track and bind the DNA minor groove. Despite sequence and structural similarity, IHF and HU can be distinguished by their different DNA substrate preferences.
Probab=20.70 E-value=1.5e+02 Score=18.68 Aligned_cols=24 Identities=25% Similarity=0.451 Sum_probs=21.2
Q ss_pred CCChhhHHHHHHHHHHHHHHHHHh
Q psy3418 81 GLTKDNVNDLMDRTYKAMSEEYEK 104 (119)
Q Consensus 81 glt~edi~~L~e~vr~~m~~~L~~ 104 (119)
+++.+|+..+.+.+.+.|.++|.+
T Consensus 14 ~~~~~~v~~vl~~~~~~i~~~L~~ 37 (87)
T cd00591 14 GLSKKDAEAAVDAFLDVITEALAK 37 (87)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHhC
Confidence 678899999999999999999865
No 98
>PF12544 LAM_C: Lysine-2,3-aminomutase ; PDB: 2A5H_D.
Probab=20.27 E-value=40 Score=24.65 Aligned_cols=17 Identities=35% Similarity=0.899 Sum_probs=6.9
Q ss_pred CCCCCCcceEEEEecCC
Q psy3418 6 GTKIPTIPTYILVRSKN 22 (119)
Q Consensus 6 ~~~~~~~~~~~~~~~~~ 22 (119)
|-|||..|-|++.++.+
T Consensus 24 gGKvPl~P~Yli~~~~~ 40 (127)
T PF12544_consen 24 GGKVPLMPNYLISQSGD 40 (127)
T ss_dssp TEEEE-----EEEEESS
T ss_pred CCCcccCCceEEecCCC
Confidence 45666666666666544
Done!