RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3418
(119 letters)
>gnl|CDD|143438 cd07120, ALDH_PsfA-ACA09737, Pseudomonas putida aldehyde
dehydrogenase PsfA (ACA09737)-like. Included in this CD
is the aldehyde dehydrogenase (PsfA, locus ACA09737) of
Pseudomonas putida involved in furoic acid metabolism.
Transcription of psfA was induced in response to
2-furoic acid, furfuryl alcohol, and furfural.
Length = 455
Score = 32.3 bits (74), Expect = 0.034
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 13 PTYILVRSKNASVPASCKIVIEASPLTPHVVATLPPILCTIPYF 56
P +LVRS ++ A C +V++ + T + A + IL IP
Sbjct: 130 PVVLLVRSLAPALAAGCTVVVKPAGQTAQINAAIIRILAEIPSL 173
>gnl|CDD|217846 pfam04017, DUF366, Domain of unknown function (DUF366). Archaeal
domain of unknown function.
Length = 182
Score = 31.5 bits (72), Expect = 0.053
Identities = 19/44 (43%), Positives = 24/44 (54%), Gaps = 3/44 (6%)
Query: 67 GRNVISILPPIPTEGLTK---DNVNDLMDRTYKAMSEEYEKITK 107
G NV S P+P GL D++ +LM+R A EE EKI K
Sbjct: 132 GINVKSEGTPVPAIGLEDLGIDDIKELMERIASAYVEEIEKIEK 175
>gnl|CDD|234516 TIGR04236, seadorna_VP2, seadornavirus VP2 protein. This protein
family occurs in the seadornavirus virus group, with the
designation VP2 in Banna virus, Kadipiro virus, and Liao
ning virus.
Length = 953
Score = 29.5 bits (66), Expect = 0.39
Identities = 17/65 (26%), Positives = 29/65 (44%), Gaps = 12/65 (18%)
Query: 46 LPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKI 105
+ P+ + DK K F++ PT+ LT N +++D+ A S +K+
Sbjct: 85 IAPVKLDLEKDKLDKAKLFET----------SPTDPLTVKNNQEVVDKLRAAQSSGIQKV 134
Query: 106 --TKE 108
TKE
Sbjct: 135 VPTKE 139
>gnl|CDD|184979 PRK15018, PRK15018, 1-acyl-sn-glycerol-3-phosphate acyltransferase;
Provisional.
Length = 245
Score = 26.9 bits (59), Expect = 2.6
Identities = 16/68 (23%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 42 VVATLPPILCTIPYFTND-KTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSE 100
+ A +P I + +N + +G ++ +LPPI KD V +L M +
Sbjct: 168 IAAGVPIIPVCVSTTSNKINLNRLHNGLVIVEMLPPIDVSQYGKDQVRELAAHCRSIMEQ 227
Query: 101 EYEKITKE 108
+ ++ KE
Sbjct: 228 KIAELDKE 235
>gnl|CDD|223282 COG0204, PlsC, 1-acyl-sn-glycerol-3-phosphate acyltransferase
[Lipid metabolism].
Length = 255
Score = 26.8 bits (59), Expect = 2.8
Identities = 7/43 (16%), Positives = 16/43 (37%)
Query: 63 KFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKI 105
G+ + I PPI L + + +L + + ++
Sbjct: 188 SLKKGKVKVRIGPPIDISALPEPLLPELAEAVEQLARPILLEL 230
>gnl|CDD|223131 COG0053, MMT1, Predicted Co/Zn/Cd cation transporters [Inorganic
ion transport and metabolism].
Length = 304
Score = 26.4 bits (59), Expect = 3.5
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 81 GLTKDNVNDLMDRTYKAMSEEYEKITKE 108
L K++VN+LMD E+ EKI
Sbjct: 198 RLFKESVNELMDA--ALDPEDLEKIRAI 223
>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 26.2 bits (59), Expect = 4.1
Identities = 8/52 (15%), Positives = 16/52 (30%), Gaps = 8/52 (15%)
Query: 74 LPPIPTEGLTKDNVNDLMDRTYK--------AMSEEYEKITKENTPPGEDKK 117
P LT +++L+ + + EE + E+K
Sbjct: 302 PKVFPISALTGQGLDELLYAVAELLEETPEFPLEEEEVEEEVYYKFEEEEKD 353
>gnl|CDD|224787 COG1875, COG1875, NYN ribonuclease and ATPase of PhoH family
domains [General function prediction only].
Length = 436
Score = 25.8 bits (57), Expect = 6.4
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 4/33 (12%)
Query: 14 TYILVRSKNASVPASCKIVIEASPLTPHVVATL 46
TYI RS +P S I+ EA LTPH + T+
Sbjct: 343 TYIRGRS----LPDSFIIIDEAQNLTPHELKTI 371
>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional.
Length = 389
Score = 25.6 bits (57), Expect = 7.4
Identities = 9/35 (25%), Positives = 22/35 (62%), Gaps = 3/35 (8%)
Query: 66 SGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSE 100
+G NV+ +LPP+ +T++ +++ ++R +A
Sbjct: 357 AGDNVVRLLPPLI---ITEEEIDEALERLERAAES 388
>gnl|CDD|173091 PRK14628, PRK14628, hypothetical protein; Provisional.
Length = 118
Score = 25.0 bits (54), Expect = 7.5
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 87 VNDLMDRTYKAMSEEYEKITKENTPPG 113
+N++M++ K EE KIT++ PG
Sbjct: 90 MNEVMEKIEKRREEEMSKITQQFGIPG 116
>gnl|CDD|153251 cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases
(LPLATs) of Glycerophospholipid Biosynthesis:
AGPAT-like. Lysophospholipid acyltransferase (LPLAT)
superfamily member: acyltransferases of de novo and
remodeling pathways of glycerophospholipid biosynthesis
which catalyze the incorporation of an acyl group from
either acylCoAs or acyl-acyl carrier proteins (acylACPs)
into acceptors such as glycerol 3-phosphate,
dihydroxyacetone phosphate or lyso-phosphatidic acid.
Included in this subgroup are such LPLATs as
1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT,
PlsC), Tafazzin (product of Barth syndrome gene), and
similar proteins.
Length = 184
Score = 25.3 bits (56), Expect = 8.4
Identities = 12/39 (30%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 60 KTKKFDSGRNV-ISILPPIPTEGL--TKDNVNDLMDRTY 95
K KK V + I PIP EGL +++ +L ++
Sbjct: 146 KGKKLPRPGRVTVRIGEPIPPEGLELAEEDRKELREKVR 184
>gnl|CDD|220691 pfam10323, 7TM_GPCR_Srv, Serpentine type 7TM GPCR chemoreceptor
Srv. Chemoreception is mediated in Caenorhabditis
elegans by members of the seven-transmembrane
G-protein-coupled receptor class (7TM GPCRs) of proteins
which are of the serpentine type. Srv is a member of the
Srg superfamily of chemoreceptors. Chemoperception is
one of the central senses of soil nematodes like C.
elegans which are otherwise 'blind' and 'deaf'.
Length = 283
Score = 25.3 bits (56), Expect = 8.6
Identities = 10/55 (18%), Positives = 20/55 (36%), Gaps = 1/55 (1%)
Query: 30 KIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPTEGLTK 84
KI A ++ LP +L ++ N +D+ N+ + + T
Sbjct: 113 KIWQSARLWKIILIYWLPGLLISLVVLKNT-DIYYDNEENMPVVADKDVIQRFTL 166
>gnl|CDD|239557 cd03475, Rieske_SoxF_SoxL, SoxF and SoxL family, Rieske domain; The
Rieske domain is a [2Fe-2S] cluster binding domain
involved in electron transfer. SoxF is a subunit of the
terminal oxidase supercomplex SoxM in the plasma
membrane of Sulfolobus acidocaldarius that combines
features of a cytochrome bc(1) complex and a cytochrome.
The Rieske domain of SoxF has a 12 residue insertion
which is not found in eukaryotic and bacterial Rieske
proteins and is thought to influence the redox
properties of the iron-sulfur cluster. SoxL is a Rieske
protein which may be part of an archaeal bc-complex
homologue whose physiological function is still unknown.
SoxL has two features not seen in other Rieske proteins;
(i) a significantly greater distance between the two
cluster-binding sites and (ii) an unexpected Pro -> Asp
substitution at one of the cluster binding sites. SoxF
and SoxL are found in archaea and in bacteria.
Length = 171
Score = 25.2 bits (55), Expect = 8.7
Identities = 12/43 (27%), Positives = 18/43 (41%)
Query: 30 KIVIEASPLTPHVVATLPPILCTIPYFTNDKTKKFDSGRNVIS 72
K ++ S + H+ PPI+ Y+ DK S VI
Sbjct: 75 KSIVAFSAICQHLGCQPPPIVSYPSYYPPDKAPGLASKGAVIH 117
>gnl|CDD|227338 COG5005, COG5005, Mu-like prophage protein gpG [General function
prediction only].
Length = 140
Score = 24.8 bits (54), Expect = 9.5
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Query: 66 SGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEYEKITKE 108
+GR +P P GLT D+ ++MD + + + ++ +E
Sbjct: 102 TGRPRKVAIPARPFLGLTPDDEQEIMD----DIQDYFSELIQE 140
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.311 0.131 0.376
Gapped
Lambda K H
0.267 0.0644 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,918,257
Number of extensions: 492411
Number of successful extensions: 393
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 23
Length of query: 119
Length of database: 10,937,602
Length adjustment: 82
Effective length of query: 37
Effective length of database: 7,300,574
Effective search space: 270121238
Effective search space used: 270121238
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 53 (24.4 bits)