RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy3418
         (119 letters)



>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
           GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
          Length = 461

 Score = 28.8 bits (63), Expect = 0.15
 Identities = 3/35 (8%), Positives = 11/35 (31%), Gaps = 3/35 (8%)

Query: 66  SGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSE 100
            G   I   P +        + +  ++     +++
Sbjct: 429 CGDKSIRFRPTLV---FRDHHAHLFLNIFSDILAD 460


>d1k8kg_ a.118.13.1 (G:) Arp2/3 complex 16 kDa subunit ARPC5 {Cow
           (Bos taurus) [TaxId: 9913]}
          Length = 143

 Score = 26.6 bits (59), Expect = 0.57
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 7/69 (10%)

Query: 43  VATLPPILCTIPYFTNDKTKKFDSGRNVISILPPIPT-------EGLTKDNVNDLMDRTY 95
            A L   L   P  T  +  K  +G  V+ +L            + L K+ V+ LM   Y
Sbjct: 44  TAALQAALKNPPINTKSQAVKDRAGSIVLKVLISFKANDIEKAVQSLDKNGVDLLMKYIY 103

Query: 96  KAMSEEYEK 104
           K      + 
Sbjct: 104 KGFESPSDN 112


>d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and
           middle domains {Thermotoga maritima [TaxId: 2336]}
          Length = 171

 Score = 25.1 bits (53), Expect = 2.4
 Identities = 6/27 (22%), Positives = 13/27 (48%)

Query: 75  PPIPTEGLTKDNVNDLMDRTYKAMSEE 101
            PIP       N++ +++   K + E+
Sbjct: 140 EPIPVSAEHNINLDTMLETIIKKLEEK 166


>d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit,
           N-terminal (G) domain {Archaeon Pyrococcus abyssi
           [TaxId: 29292]}
          Length = 195

 Score = 24.6 bits (52), Expect = 3.5
 Identities = 6/18 (33%), Positives = 9/18 (50%)

Query: 75  PPIPTEGLTKDNVNDLMD 92
           P IP   L   N++ L+ 
Sbjct: 170 PIIPISALHGANIDVLVK 187


>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
           (G) domain {Archaeon Methanobacterium
           thermoautotrophicum [TaxId: 145262]}
          Length = 227

 Score = 24.3 bits (51), Expect = 4.2
 Identities = 8/40 (20%), Positives = 20/40 (50%), Gaps = 1/40 (2%)

Query: 63  KFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEEY 102
           +FD   +  S +  IP   +T + + +L+      ++++Y
Sbjct: 181 RFDRVTDFASQVSIIPISAITGEGIPELLT-MLMGLAQQY 219


>d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus
           horikoshii [TaxId: 53953]}
          Length = 184

 Score = 23.9 bits (50), Expect = 6.3
 Identities = 7/26 (26%), Positives = 12/26 (46%)

Query: 75  PPIPTEGLTKDNVNDLMDRTYKAMSE 100
             IP      DN+  L +R ++ + E
Sbjct: 158 VFIPISAKFGDNIERLKNRIFEVIRE 183


>d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit,
           N-terminal (G) domain {Sulfolobus solfataricus [TaxId:
           2287]}
          Length = 205

 Score = 23.8 bits (50), Expect = 6.4
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 75  PPIPTEGLTKDNVNDLMD 92
           P IP   L K N++ L++
Sbjct: 178 PIIPVSALHKINIDSLIE 195


>d2ddza1 d.104.1.4 (A:3-190) Uncharacterized protein PH0223
           {Pyrococcus horikoshii [TaxId: 53953]}
          Length = 188

 Score = 23.6 bits (51), Expect = 7.6
 Identities = 12/38 (31%), Positives = 21/38 (55%), Gaps = 2/38 (5%)

Query: 75  PPIPTEGL--TKDNVNDLMDRTYKAMSEEYEKITKENT 110
           P +   GL     +  + M+R+ KA+ EE EK+ K++ 
Sbjct: 145 PGVDAIGLEELGIDPTEFMERSAKALVEEIEKVRKDSL 182


>d3brja1 a.285.1.1 (A:6-172) Mannitol operon repressor MtlR {Vibrio
           parahaemolyticus [TaxId: 670]}
          Length = 167

 Score = 23.2 bits (50), Expect = 7.9
 Identities = 7/53 (13%), Positives = 22/53 (41%), Gaps = 4/53 (7%)

Query: 56  FTNDKTKKFDSGRNVISILPPIPTEGLTKDNVNDLMDRTYKAMSEE-YEKITK 107
           FT+    +     +++  +  +  E    +  +D +D  +  +  +  ++I K
Sbjct: 102 FTDPNILEPIKKLHLVKKMGMVQLE---VNEPDDDIDLEFYQLQLQRQQQIIK 151


>d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release
           factor ERF2, G domain {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 245

 Score = 23.3 bits (49), Expect = 9.2
 Identities = 8/28 (28%), Positives = 13/28 (46%)

Query: 67  GRNVISILPPIPTEGLTKDNVNDLMDRT 94
           G N  + +  +P    T  NV D +D +
Sbjct: 200 GYNSKTDVKYMPVSAYTGQNVKDRVDSS 227


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.311    0.131    0.376 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 422,883
Number of extensions: 17440
Number of successful extensions: 39
Number of sequences better than 10.0: 1
Number of HSP's gapped: 39
Number of HSP's successfully gapped: 15
Length of query: 119
Length of database: 2,407,596
Length adjustment: 74
Effective length of query: 45
Effective length of database: 1,391,576
Effective search space: 62620920
Effective search space used: 62620920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 47 (22.1 bits)