Query psy3426
Match_columns 360
No_of_seqs 335 out of 2955
Neff 9.5
Searched_HMMs 46136
Date Sat Aug 17 00:45:03 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3426.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3426hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1093|consensus 100.0 5.8E-51 1.3E-55 373.7 17.0 331 2-353 393-723 (725)
2 KOG4567|consensus 100.0 9.9E-38 2.1E-42 267.9 14.5 201 2-204 123-363 (370)
3 KOG2058|consensus 100.0 7.7E-37 1.7E-41 281.0 16.1 181 2-186 199-383 (436)
4 KOG1092|consensus 100.0 1.6E-33 3.5E-38 250.9 14.9 197 2-202 246-474 (484)
5 smart00164 TBC Domain in Tre-2 100.0 5.7E-33 1.2E-37 239.1 15.9 147 2-152 49-198 (199)
6 KOG2223|consensus 100.0 1.2E-32 2.5E-37 245.6 16.2 191 2-196 358-550 (586)
7 PF00566 RabGAP-TBC: Rab-GTPas 100.0 6.5E-32 1.4E-36 235.1 16.4 165 2-171 49-214 (214)
8 COG5210 GTPase-activating prot 100.0 9E-31 2E-35 253.7 16.4 176 2-181 259-437 (496)
9 KOG3636|consensus 100.0 7.7E-29 1.7E-33 222.0 18.0 309 24-349 93-427 (669)
10 KOG1091|consensus 99.9 3E-27 6.4E-32 217.9 13.2 203 2-206 107-367 (625)
11 KOG2222|consensus 99.9 9.5E-27 2.1E-31 210.2 11.4 195 2-200 214-417 (848)
12 KOG4347|consensus 99.9 3.2E-25 7E-30 208.0 12.1 194 3-202 247-458 (671)
13 KOG2595|consensus 99.9 6E-24 1.3E-28 185.1 17.0 202 1-208 98-307 (395)
14 KOG4436|consensus 99.9 5.5E-23 1.2E-27 196.1 14.4 181 2-186 624-807 (948)
15 KOG2224|consensus 99.9 1.5E-22 3.2E-27 181.3 13.4 198 3-203 499-731 (781)
16 KOG2197|consensus 99.9 1.1E-22 2.4E-27 193.5 9.2 200 3-207 241-447 (488)
17 cd01533 4RHOD_Repeat_2 Member 99.9 8.9E-22 1.9E-26 152.3 6.7 101 235-352 8-109 (109)
18 cd01518 RHOD_YceA Member of th 99.8 2.8E-21 6E-26 147.5 8.7 100 237-350 2-101 (101)
19 KOG1102|consensus 99.8 1.1E-21 2.3E-26 183.5 6.6 179 2-186 188-368 (397)
20 cd01527 RHOD_YgaP Member of th 99.8 8.7E-21 1.9E-25 144.2 7.0 98 237-355 2-99 (99)
21 cd01525 RHOD_Kc Member of the 99.8 1.7E-20 3.6E-25 144.3 8.5 105 239-350 1-105 (105)
22 PRK00162 glpE thiosulfate sulf 99.8 8.5E-21 1.8E-25 146.6 6.8 104 235-358 3-106 (108)
23 PLN02160 thiosulfate sulfurtra 99.8 1.9E-20 4E-25 150.0 8.5 113 234-357 12-128 (136)
24 KOG1530|consensus 99.8 1.2E-20 2.6E-25 142.8 5.9 115 232-356 18-135 (136)
25 cd01534 4RHOD_Repeat_3 Member 99.8 2.2E-20 4.9E-25 140.7 6.6 95 239-350 1-95 (95)
26 cd01523 RHOD_Lact_B Member of 99.8 3E-19 6.5E-24 136.0 8.8 100 239-350 1-100 (100)
27 cd01519 RHOD_HSP67B2 Member of 99.8 6.1E-20 1.3E-24 141.4 5.0 104 240-350 2-106 (106)
28 TIGR03865 PQQ_CXXCW PQQ-depend 99.8 4E-19 8.6E-24 146.5 9.3 114 233-355 32-162 (162)
29 cd01447 Polysulfide_ST Polysul 99.8 2.1E-19 4.5E-24 137.6 6.7 102 239-352 1-103 (103)
30 cd01526 RHOD_ThiF Member of th 99.8 2.1E-19 4.6E-24 141.8 6.9 110 236-354 7-117 (122)
31 cd01521 RHOD_PspE2 Member of t 99.8 4.3E-19 9.3E-24 137.4 7.4 103 235-355 6-110 (110)
32 cd01528 RHOD_2 Member of the R 99.8 3.3E-19 7.1E-24 136.0 6.5 97 238-350 1-98 (101)
33 cd01530 Cdc25 Cdc25 phosphatas 99.8 7.1E-19 1.5E-23 138.2 7.6 103 237-349 2-120 (121)
34 cd01520 RHOD_YbbB Member of th 99.8 8.3E-19 1.8E-23 139.6 7.6 105 239-350 1-126 (128)
35 cd01448 TST_Repeat_1 Thiosulfa 99.8 1.3E-18 2.8E-23 137.5 8.6 109 239-352 2-122 (122)
36 cd01522 RHOD_1 Member of the R 99.8 9.3E-19 2E-23 136.9 7.6 103 239-350 1-104 (117)
37 cd01444 GlpE_ST GlpE sulfurtra 99.8 7E-19 1.5E-23 132.9 6.7 94 238-350 1-96 (96)
38 cd01524 RHOD_Pyr_redox Member 99.8 7.8E-19 1.7E-23 130.9 6.3 89 239-349 1-89 (90)
39 smart00450 RHOD Rhodanese Homo 99.8 1.1E-18 2.3E-23 132.5 5.5 96 254-354 2-100 (100)
40 cd01449 TST_Repeat_2 Thiosulfa 99.7 1E-18 2.2E-23 137.3 5.3 103 239-350 1-118 (118)
41 cd01529 4RHOD_Repeats Member o 99.7 1.3E-18 2.9E-23 131.3 5.6 86 254-350 10-96 (96)
42 cd01535 4RHOD_Repeat_4 Member 99.7 2.4E-18 5.1E-23 139.3 6.4 88 254-358 9-97 (145)
43 PF00581 Rhodanese: Rhodanese- 99.7 1.3E-18 2.9E-23 135.3 4.5 103 240-351 1-113 (113)
44 cd01532 4RHOD_Repeat_1 Member 99.7 2.8E-18 6.2E-23 128.3 5.8 84 253-350 7-92 (92)
45 cd01445 TST_Repeats Thiosulfat 99.7 6.6E-18 1.4E-22 135.6 7.2 110 239-349 1-137 (138)
46 cd01531 Acr2p Eukaryotic arsen 99.7 1E-17 2.2E-22 130.4 7.1 102 236-351 1-112 (113)
47 PRK08762 molybdopterin biosynt 99.7 6.9E-18 1.5E-22 158.4 6.9 105 236-359 2-106 (376)
48 cd00158 RHOD Rhodanese Homolog 99.7 2E-17 4.4E-22 122.8 6.8 83 253-349 7-89 (89)
49 PRK01415 hypothetical protein; 99.7 1.8E-17 3.9E-22 144.0 7.1 104 235-352 110-213 (247)
50 cd01443 Cdc25_Acr2p Cdc25 enzy 99.7 4.6E-17 1E-21 126.7 8.2 102 237-349 2-112 (113)
51 PRK11493 sseA 3-mercaptopyruva 99.7 2.5E-17 5.5E-22 148.8 7.1 118 237-358 5-136 (281)
52 PRK09629 bifunctional thiosulf 99.7 6E-17 1.3E-21 159.4 9.2 117 237-357 9-129 (610)
53 TIGR02981 phageshock_pspE phag 99.7 2E-17 4.3E-22 125.0 4.5 80 255-349 17-96 (101)
54 PRK05320 rhodanese superfamily 99.7 5.5E-17 1.2E-21 143.3 7.6 107 235-351 108-216 (257)
55 PLN02723 3-mercaptopyruvate su 99.7 7.4E-17 1.6E-21 148.0 8.6 118 237-358 22-152 (320)
56 COG0607 PspE Rhodanese-related 99.7 1.1E-16 2.4E-21 124.0 7.6 92 253-358 17-109 (110)
57 PRK10287 thiosulfate:cyanide s 99.7 3.3E-17 7.3E-22 124.3 4.3 81 254-349 18-98 (104)
58 PRK00142 putative rhodanese-re 99.7 1.5E-16 3.3E-21 144.6 8.2 104 234-351 109-212 (314)
59 PRK07878 molybdopterin biosynt 99.6 1.1E-15 2.3E-20 144.0 8.6 103 235-354 285-387 (392)
60 PLN02723 3-mercaptopyruvate su 99.6 5.9E-16 1.3E-20 142.0 6.6 112 238-358 191-318 (320)
61 PRK11493 sseA 3-mercaptopyruva 99.6 1.6E-15 3.5E-20 137.1 8.0 110 239-358 155-280 (281)
62 COG2897 SseA Rhodanese-related 99.6 3.6E-15 7.8E-20 132.1 8.3 120 236-359 10-140 (285)
63 PRK09629 bifunctional thiosulf 99.6 3E-15 6.5E-20 147.5 7.3 114 237-359 147-273 (610)
64 KOG2221|consensus 99.6 1.6E-15 3.5E-20 124.9 4.3 120 3-127 146-267 (267)
65 cd01446 DSP_MapKP N-terminal r 99.6 4.6E-15 1E-19 118.7 6.7 110 238-351 1-127 (132)
66 PRK07411 hypothetical protein; 99.5 6.8E-15 1.5E-19 138.2 7.0 108 234-355 279-386 (390)
67 PRK05597 molybdopterin biosynt 99.5 5.6E-15 1.2E-19 137.2 5.8 96 236-351 260-355 (355)
68 COG2897 SseA Rhodanese-related 99.5 2E-14 4.4E-19 127.3 7.7 114 237-359 156-284 (285)
69 PRK11784 tRNA 2-selenouridine 99.5 1.1E-14 2.3E-19 133.8 5.8 107 240-355 4-133 (345)
70 TIGR03167 tRNA_sel_U_synt tRNA 99.5 1.5E-14 3.2E-19 131.0 5.4 99 256-356 2-120 (311)
71 PRK05600 thiamine biosynthesis 99.5 8.4E-14 1.8E-18 129.7 7.0 96 237-347 271-370 (370)
72 COG1054 Predicted sulfurtransf 99.3 2E-12 4.3E-17 112.6 5.8 100 235-349 111-211 (308)
73 KOG4436|consensus 99.3 3.2E-12 6.9E-17 123.3 6.2 178 2-183 230-418 (948)
74 KOG3772|consensus 99.3 5.5E-12 1.2E-16 111.7 6.0 110 232-350 151-275 (325)
75 KOG1529|consensus 99.2 3.2E-11 7E-16 104.6 8.3 119 237-359 5-138 (286)
76 PRK01269 tRNA s(4)U8 sulfurtra 99.1 6.1E-11 1.3E-15 114.8 5.3 74 254-343 405-482 (482)
77 KOG2017|consensus 99.0 4.2E-10 9.1E-15 99.6 4.0 102 237-351 317-419 (427)
78 KOG2801|consensus 98.9 2.3E-08 5E-13 86.7 11.8 178 19-201 107-293 (559)
79 COG5105 MIH1 Mitotic inducer, 98.7 3.4E-08 7.3E-13 86.5 7.6 108 227-350 232-357 (427)
80 KOG1529|consensus 98.6 6E-08 1.3E-12 84.5 4.4 94 253-352 169-277 (286)
81 KOG1648|consensus 98.0 9.6E-08 2.1E-12 88.2 -6.3 188 2-209 609-803 (813)
82 PF14961 BROMI: Broad-minded p 97.8 0.00084 1.8E-08 69.4 15.2 166 28-196 1088-1272(1296)
83 COG2603 Predicted ATPase [Gene 96.3 0.0011 2.3E-08 58.3 0.1 93 255-348 14-126 (334)
84 KOG1717|consensus 94.8 0.02 4.4E-07 49.7 2.6 104 238-351 5-124 (343)
85 PRK00142 putative rhodanese-re 93.0 0.0077 1.7E-07 55.2 -3.7 43 238-285 15-57 (314)
86 TIGR01244 conserved hypothetic 92.8 0.39 8.3E-06 38.2 6.3 88 237-336 13-113 (135)
87 KOG2224|consensus 92.4 0.048 1E-06 50.5 0.7 34 42-76 566-599 (781)
88 PF04273 DUF442: Putative phos 91.9 0.43 9.4E-06 36.4 5.3 80 236-327 12-103 (110)
89 PF13350 Y_phosphatase3: Tyros 82.4 2.4 5.2E-05 34.8 4.6 36 231-270 22-57 (164)
90 TIGR03167 tRNA_sel_U_synt tRNA 72.3 3 6.5E-05 38.2 2.6 34 237-274 136-172 (311)
91 PF01451 LMWPc: Low molecular 69.1 7.3 0.00016 30.8 3.9 37 312-348 1-41 (138)
92 PF01488 Shikimate_DH: Shikima 67.1 9.8 0.00021 30.0 4.3 38 304-343 7-44 (135)
93 cd00127 DSPc Dual specificity 64.5 8.9 0.00019 30.1 3.6 28 308-335 80-109 (139)
94 smart00226 LMWPc Low molecular 61.8 13 0.00028 29.5 4.0 37 312-348 1-37 (140)
95 PRK11391 etp phosphotyrosine-p 58.7 20 0.00044 28.7 4.7 39 310-349 3-41 (144)
96 TIGR02689 ars_reduc_gluta arse 58.3 21 0.00046 27.7 4.7 36 311-346 2-37 (126)
97 PRK10126 tyrosine phosphatase; 57.4 21 0.00046 28.6 4.6 39 310-349 3-41 (147)
98 PF10815 ComZ: ComZ; InterPro 55.6 24 0.00052 22.7 3.5 41 96-136 5-45 (56)
99 PRK08384 thiamine biosynthesis 51.8 46 0.00099 31.6 6.5 115 187-336 82-206 (381)
100 PRK13530 arsenate reductase; P 51.7 33 0.00071 27.0 4.8 37 310-346 4-40 (133)
101 COG0394 Wzb Protein-tyrosine-p 49.5 33 0.00071 27.4 4.4 39 310-348 3-41 (139)
102 PF00899 ThiF: ThiF family; I 49.3 26 0.00057 27.4 3.9 42 309-352 2-43 (135)
103 cd00115 LMWPc Substituted upda 48.1 28 0.0006 27.6 3.9 38 311-348 2-40 (141)
104 PF09992 DUF2233: Predicted pe 47.6 25 0.00055 28.8 3.7 28 319-347 115-142 (170)
105 PRK01565 thiamine biosynthesis 46.2 1.1E+02 0.0025 29.1 8.3 115 187-336 81-202 (394)
106 COG3453 Uncharacterized protei 44.2 58 0.0012 25.2 4.7 21 308-329 86-106 (130)
107 PRK08762 molybdopterin biosynt 42.1 35 0.00076 32.2 4.2 42 307-350 133-174 (376)
108 TIGR02691 arsC_pI258_fam arsen 41.9 42 0.0009 26.3 3.9 35 312-346 1-35 (129)
109 PF08109 Antimicrobial14: Lact 40.9 20 0.00044 19.3 1.3 14 42-55 3-16 (31)
110 TIGR00640 acid_CoA_mut_C methy 40.6 57 0.0012 25.7 4.5 45 309-353 53-106 (132)
111 KOG0685|consensus 40.2 44 0.00096 32.3 4.4 35 308-344 20-54 (498)
112 PRK07688 thiamine/molybdopteri 40.2 29 0.00063 32.3 3.2 42 234-276 274-317 (339)
113 COG1179 Dinucleotide-utilizing 40.0 52 0.0011 29.0 4.4 38 303-342 24-61 (263)
114 COG0169 AroE Shikimate 5-dehyd 39.4 46 0.00099 30.1 4.2 33 309-343 126-158 (283)
115 smart00195 DSPc Dual specifici 38.4 49 0.0011 25.8 3.9 29 308-336 77-107 (138)
116 COG2453 CDC14 Predicted protei 37.5 43 0.00093 27.9 3.6 28 308-335 104-133 (180)
117 PLN03050 pyridoxine (pyridoxam 35.6 66 0.0014 28.4 4.6 31 310-341 61-93 (246)
118 PLN02727 NAD kinase 35.5 1.1E+02 0.0024 32.5 6.6 86 234-331 264-364 (986)
119 PF02590 SPOUT_MTase: Predicte 35.0 67 0.0014 26.1 4.2 42 308-349 66-111 (155)
120 PRK14027 quinate/shikimate deh 34.2 63 0.0014 29.2 4.3 33 308-342 126-158 (283)
121 COG2518 Pcm Protein-L-isoaspar 33.9 61 0.0013 27.8 3.9 41 311-352 96-137 (209)
122 TIGR01809 Shik-DH-AROM shikima 33.7 61 0.0013 29.2 4.2 33 308-342 124-156 (282)
123 cd05567 PTS_IIB_mannitol PTS_I 33.3 61 0.0013 23.2 3.4 21 311-331 2-22 (87)
124 COG4671 Predicted glycosyl tra 33.0 66 0.0014 30.0 4.1 52 308-360 8-69 (400)
125 COG0062 Uncharacterized conser 32.9 92 0.002 26.6 4.8 34 309-343 49-85 (203)
126 TIGR00201 comF comF family pro 32.6 73 0.0016 26.7 4.3 33 308-341 151-186 (190)
127 cd02071 MM_CoA_mut_B12_BD meth 32.5 87 0.0019 24.1 4.4 43 311-353 52-103 (122)
128 PF14483 Cut8_M: Cut8 dimerisa 32.3 33 0.00071 20.6 1.5 18 22-39 11-28 (38)
129 TIGR02356 adenyl_thiF thiazole 31.3 94 0.002 26.4 4.8 41 306-348 18-58 (202)
130 TIGR00246 tRNA_RlmH_YbeA rRNA 31.2 1.1E+02 0.0025 24.7 4.9 43 307-350 63-109 (153)
131 PRK00103 rRNA large subunit me 31.1 91 0.002 25.4 4.4 42 309-350 67-112 (157)
132 PF00782 DSPc: Dual specificit 31.1 73 0.0016 24.5 3.8 29 308-336 72-102 (133)
133 PRK12549 shikimate 5-dehydroge 30.2 79 0.0017 28.5 4.3 34 308-343 126-159 (284)
134 KOG0333|consensus 29.6 88 0.0019 30.8 4.5 41 303-345 511-551 (673)
135 PF02302 PTS_IIB: PTS system, 29.2 80 0.0017 22.4 3.5 26 311-336 1-30 (90)
136 PF07755 DUF1611: Protein of u 29.0 1E+02 0.0022 28.2 4.6 22 322-343 129-150 (301)
137 PRK15116 sulfur acceptor prote 28.6 98 0.0021 27.8 4.5 41 304-346 25-65 (268)
138 PLN02918 pyridoxine (pyridoxam 27.8 1E+02 0.0022 30.7 4.8 31 310-341 136-168 (544)
139 PF05706 CDKN3: Cyclin-depende 27.7 72 0.0016 26.3 3.2 27 308-334 132-159 (168)
140 TIGR00853 pts-lac PTS system, 27.6 91 0.002 22.9 3.5 35 309-345 3-41 (95)
141 PF03853 YjeF_N: YjeF-related 27.3 83 0.0018 25.8 3.6 33 307-340 23-57 (169)
142 TIGR00342 thiazole biosynthesi 26.9 2.9E+02 0.0063 26.0 7.6 56 255-336 142-198 (371)
143 PRK05690 molybdopterin biosynt 26.8 1.1E+02 0.0023 27.0 4.4 41 307-349 30-70 (245)
144 PRK12749 quinate/shikimate deh 26.7 94 0.002 28.2 4.2 33 308-342 123-155 (288)
145 cd05311 NAD_bind_2_malic_enz N 26.5 91 0.002 27.1 3.9 34 308-343 24-59 (226)
146 PRK12548 shikimate 5-dehydroge 26.0 1E+02 0.0022 27.9 4.3 33 308-342 125-157 (289)
147 PRK01269 tRNA s(4)U8 sulfurtra 25.4 1.4E+02 0.0031 29.2 5.5 113 188-336 85-203 (482)
148 PRK12550 shikimate 5-dehydroge 25.2 1.1E+02 0.0023 27.5 4.2 32 309-342 122-153 (272)
149 TIGR02355 moeB molybdopterin s 25.0 1.1E+02 0.0025 26.8 4.3 41 306-348 21-61 (240)
150 PTZ00242 protein tyrosine phos 24.9 98 0.0021 25.4 3.6 27 308-334 97-124 (166)
151 TIGR02354 thiF_fam2 thiamine b 24.9 1.5E+02 0.0033 25.2 4.9 40 306-347 18-57 (200)
152 PRK12475 thiamine/molybdopteri 24.8 1.1E+02 0.0025 28.3 4.4 42 307-350 22-63 (338)
153 PRK08328 hypothetical protein; 24.3 1.2E+02 0.0027 26.3 4.4 39 307-347 25-63 (231)
154 cd00755 YgdL_like Family of ac 24.1 1.3E+02 0.0029 26.2 4.4 40 306-347 8-47 (231)
155 cd05565 PTS_IIB_lactose PTS_II 24.0 1E+02 0.0022 22.9 3.2 33 311-345 2-38 (99)
156 cd01485 E1-1_like Ubiquitin ac 23.8 1.4E+02 0.0031 25.2 4.5 39 307-347 17-55 (198)
157 PF12854 PPR_1: PPR repeat 23.6 1.4E+02 0.0031 16.8 3.2 31 116-146 2-32 (34)
158 PF03937 Sdh5: Flavinator of s 23.5 1.5E+02 0.0033 20.6 3.9 25 92-116 35-59 (74)
159 cd05566 PTS_IIB_galactitol PTS 23.5 1.1E+02 0.0023 21.8 3.2 21 311-331 2-22 (89)
160 cd00757 ThiF_MoeB_HesA_family 23.5 1.5E+02 0.0034 25.6 4.8 41 307-349 19-59 (228)
161 cd01483 E1_enzyme_family Super 22.7 1.3E+02 0.0027 23.7 3.8 35 312-348 2-36 (143)
162 KOG2018|consensus 22.7 1.8E+02 0.0039 26.8 4.9 38 303-342 68-105 (430)
163 PRK09590 celB cellobiose phosp 22.4 1.2E+02 0.0025 22.9 3.3 29 310-340 2-34 (104)
164 cd05568 PTS_IIB_bgl_like PTS_I 22.3 1.2E+02 0.0025 21.2 3.2 23 311-333 2-24 (85)
165 COG2185 Sbm Methylmalonyl-CoA 22.2 1.7E+02 0.0036 23.5 4.2 38 308-345 62-102 (143)
166 PF00156 Pribosyltran: Phospho 22.1 1.5E+02 0.0033 22.3 4.1 32 308-340 87-121 (125)
167 cd05563 PTS_IIB_ascorbate PTS_ 22.0 1E+02 0.0022 21.8 2.8 21 312-332 2-22 (86)
168 PRK10878 hypothetical protein; 21.9 1.1E+02 0.0025 21.2 2.9 27 93-119 23-49 (72)
169 PRK09162 hypoxanthine-guanine 21.9 1.5E+02 0.0032 24.7 4.1 34 307-341 95-131 (181)
170 PRK07688 thiamine/molybdopteri 21.3 1.3E+02 0.0028 28.0 4.0 41 307-349 22-62 (339)
171 cd01492 Aos1_SUMO Ubiquitin ac 20.5 1.4E+02 0.0031 25.2 3.9 40 308-349 20-59 (197)
172 PRK06153 hypothetical protein; 20.5 1.9E+02 0.0042 27.4 5.0 44 305-350 172-215 (393)
173 cd00133 PTS_IIB PTS_IIB: subun 20.4 1.1E+02 0.0023 21.0 2.7 21 312-332 2-22 (84)
174 PRK08644 thiamine biosynthesis 20.3 1.9E+02 0.0042 24.8 4.7 40 307-348 26-65 (212)
175 PF04343 DUF488: Protein of un 20.1 58 0.0012 25.1 1.3 34 241-277 2-40 (122)
No 1
>KOG1093|consensus
Probab=100.00 E-value=5.8e-51 Score=373.72 Aligned_cols=331 Identities=50% Similarity=0.842 Sum_probs=299.6
Q ss_pred ceeccCCccCCCCcccCChhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHhhhhcc
Q psy3426 2 FCYFGFNLCHQYNELLSSKTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKYLHNF 81 (360)
Q Consensus 2 ~I~~Dv~Rt~~~~~~f~~~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~~~~~ 81 (360)
+||+||+||++++...+.+.++++|+|+|.+|+-.+|. +.|.||+..+|+||+++++++|..||.|+..++-+|+++|
T Consensus 393 qievdiprchQyd~~lsSp~~~r~lrRvLkawv~~s~~--fvywqgldsLa~PFl~ln~Nne~laF~~~~~fi~kycq~f 470 (725)
T KOG1093|consen 393 QIEVDIPRCHQYDELLSSPKGHRKLRRVLKAWVTWSPI--FVYWQGLDSLAAPFLYLNFNNELLAFACIATFIPKYCQHF 470 (725)
T ss_pred hhhcccchhhhcccccCCHHHHHHHHHHHHHHHhcCcc--eeecCCChhhhhhHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999 9999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhCCCchHHHHHHH
Q psy3426 82 FLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLGDASFPLFIGVS 161 (360)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~~~~~~~~v~~a 161 (360)
|..+++..+++++..|.+++.++||+|++||..+|+.++.|+++||.|+|++++|.+.++.+||-++.++..|++++++|
T Consensus 471 flkdns~vikeyLs~f~~l~AfhDpeL~qHl~~~~f~~eLyAiPwflT~Fshvlpl~kil~LwD~lml~~~SFplmi~vA 550 (725)
T KOG1093|consen 471 FLKDNSNVIKEYLSMFSQLLAFHDPELLQHLIDIGFIPELYAIPWFLTMFSHVLPLHKILHLWDNLMLGHSSFPLMIGVA 550 (725)
T ss_pred HhhcCchhHHHHHHHHHHHHHhcCHHHHHHHHHcCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHhcCCHHHHHHHhcCCCCCCHHHHHHHHHHhHhhCCCccccccccccchhhhhhhhhhhhhhhcccccccCH
Q psy3426 162 ILKQLRETLLSSGFNECILLFSDLPEVDIEQSVTDSIDIYCVTPRSITFRMHESESTLLEGALLQRHNQALSEFCSSLSS 241 (360)
Q Consensus 162 il~~~~~~ll~~~~~~~l~~l~~~~~~d~~~li~~A~~l~~~~P~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~ 241 (360)
++.+.|+.++..++.|++.+|.+.|++|++.+|+....+++.||+|+++|.|.....+.+. .+..++++.++.|++
T Consensus 551 il~~lR~~LLa~nfne~illf~d~pdldId~~Ires~~l~e~tP~sit~rqha~~~k~~s~----~l~~l~se~~prmsA 626 (725)
T KOG1093|consen 551 ILIQLRDPLLACNFNECILLFSDLPDLDIDVCIRESYHLMETTPKSITPRQHANPFKPTSL----SLQQLSSEHCPRISA 626 (725)
T ss_pred HHHHhhhhhhhCCchhheeeeccCCcccHHHHHHHHhhhhhCCCCCCChHHhcCCCCCcch----hhHHhhhhcCccccH
Confidence 9999999999999999999999999999999999999999999999999999998876444 667889999999999
Q ss_pred HHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCCCch
Q psy3426 242 TDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSM 321 (360)
Q Consensus 242 ~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~ 321 (360)
+++...- ...++|.|...||..+|+++++|+|...- +.+++.....+.....+++.+|+++.+..
T Consensus 627 edl~~~~-------~l~v~d~r~~~ef~r~~~s~s~nip~~~~-------ea~l~~~~~l~~~~~~~~~~~v~~~~~~K- 691 (725)
T KOG1093|consen 627 EDLIWLK-------MLYVLDTRQESEFQREHFSDSINIPFNNH-------EADLDWLRFLPGIVCSEGKKCVVVGKNDK- 691 (725)
T ss_pred HHHHHHH-------HHHHHhHHHHHHHHHhhccccccCCccch-------HHHHHHhhcchHhHHhhCCeEEEeccchH-
Confidence 9987652 46899999999999999999999999822 33333333344444456777888877777
Q ss_pred hHHHHHHHHHHcCCCcEEEecccccccccCcc
Q psy3426 322 RQAKFARFIVRLGFPKVTYVHEHVNSFECYGV 353 (360)
Q Consensus 322 ~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl 353 (360)
.+++....+..+.+.++.++.||+++.+..++
T Consensus 692 ~~~e~~~~~~~mk~p~~cil~~~~~~~~~~v~ 723 (725)
T KOG1093|consen 692 HAAERLTELYVMKVPRICILHDGFNNIDPVVL 723 (725)
T ss_pred HHHHHhhHHHHhcccHHHHHHHHHhhcCcccc
Confidence 77777777777778899999999986655543
No 2
>KOG4567|consensus
Probab=100.00 E-value=9.9e-38 Score=267.86 Aligned_cols=201 Identities=26% Similarity=0.463 Sum_probs=178.4
Q ss_pred ceeccCCccCCCCcccCCh---h------------------------hHHHHHHHHHHHHHHcCCCCCcccCChhHHHHH
Q psy3426 2 FCYFGFNLCHQYNELLSSK---T------------------------GHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAP 54 (360)
Q Consensus 2 ~I~~Dv~Rt~~~~~~f~~~---~------------------------~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ 54 (360)
+|++|+.||+|..++|+.. . .....+|||..||+.||+ +||+||||.|++|
T Consensus 123 QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~gl~~~~~erilfiyAKLNpG--i~YVQGMNEIlaP 200 (370)
T KOG4567|consen 123 QIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRLGLTRFAAERILFIYAKLNPG--IGYVQGMNEILAP 200 (370)
T ss_pred HHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhcccchhhhHHHHHHHHHhhcCCc--chHHhhhHHHhhh
Confidence 7999999999999999521 0 011368999999999999 9999999999999
Q ss_pred HHHHhcCC---------hhHHHHHHHHHHHhhhhccC--CCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccch
Q psy3426 55 FVFLNFND---------EATAYACFSTFIPKYLHNFF--LRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFA 123 (360)
Q Consensus 55 ll~~~~~~---------e~~~f~~~~~l~~~~~~~~~--~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~ 123 (360)
+++++..| |++||.||.++|.....+|. ..+...|++..+..+..+|+.+|-+||.||++.++.|..|+
T Consensus 201 iYYVfa~Dpd~e~~~~aEaDaFFCF~~LMseirDnf~k~LDdS~~GI~~~Msr~~~~lk~~D~EL~~~L~~~~i~Pqfya 280 (370)
T KOG4567|consen 201 IYYVFANDPDEENRAYAEADAFFCFTQLMSEIRDNFIKTLDDSVGGIHFLMSRLSELLKKHDEELWRHLEEKEIHPQFYA 280 (370)
T ss_pred hheeeccCCchhhHHhhhhhHHHHHHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHhcCCCccchh
Confidence 99998655 89999999999977444433 23455678888999999999999999999999999999999
Q ss_pred HHHHHHHhcccCCHHHHHHHHHHHhhCC--CchHHHHHHHHHHHhHHHHhcCCHHHHHHHhcCCCCCCHHHHHHHHHHhH
Q psy3426 124 IPWFLTMFSHVLPLHKIFHLWDKLLLGD--ASFPLFIGVSILKQLRETLLSSGFNECILLFSDLPEVDIEQSVTDSIDIY 201 (360)
Q Consensus 124 ~~W~~~lF~~~l~~~~~~~iwD~~l~~~--~~~~~~v~~ail~~~~~~ll~~~~~~~l~~l~~~~~~d~~~li~~A~~l~ 201 (360)
++|+..|++.++|++++++|||.+++.. ..++.++|.|+|+..|+.|++.|+...++.||+.|..|+.+++..|..|.
T Consensus 281 FRWitLLLsQEF~lpDvi~lWDsl~sD~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ~yp~tdi~~~l~~A~~Lr 360 (370)
T KOG4567|consen 281 FRWITLLLSQEFPLPDVIRLWDSLLSDPQRFDFLLYICCSMLILVRERILEGDFTVNMKLLQNYPTTDISKMLAVADSLR 360 (370)
T ss_pred HHHHHHHHhccCCchhHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcCCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999999875 56789999999999999999999999999999999999999999999997
Q ss_pred hhC
Q psy3426 202 CVT 204 (360)
Q Consensus 202 ~~~ 204 (360)
.+.
T Consensus 361 ~~k 363 (370)
T KOG4567|consen 361 DKK 363 (370)
T ss_pred hcc
Confidence 543
No 3
>KOG2058|consensus
Probab=100.00 E-value=7.7e-37 Score=281.02 Aligned_cols=181 Identities=24% Similarity=0.410 Sum_probs=167.8
Q ss_pred ceeccCCccCCCC-cccCC--hhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHhhh
Q psy3426 2 FCYFGFNLCHQYN-ELLSS--KTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKYL 78 (360)
Q Consensus 2 ~I~~Dv~Rt~~~~-~~f~~--~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~~ 78 (360)
+|++|+.||||.+ +.|.. +.++++|+|||.||+++||. ||||||||.+||++|+++ ++|++|||+|..++++++
T Consensus 199 qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~--vGYCQGmNflAallLL~~-~~EE~AFW~Lv~iie~~l 275 (436)
T KOG2058|consen 199 QIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPS--VGYCQGMNFLAALLLLLM-PSEEDAFWMLVALIENYL 275 (436)
T ss_pred HHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCC--CcchhhHHHHHHHHHHhc-CChHHHHHHHHHHHHHhc
Confidence 6899999999999 78864 45589999999999999999 999999999999998877 669999999999999999
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhCCCchHHHH
Q psy3426 79 HNFFLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLGDASFPLFI 158 (360)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~~~~~~~~v 158 (360)
|. |+.++..+.+....+++.+++..+|+|+.||..+++...+++.+||+++|+..+|.+.++||||++|.+|.+++|.+
T Consensus 276 p~-Yyt~nL~g~qvDQ~VL~~llre~lPkl~~~l~~~~~~~~l~t~~wfLt~f~d~lP~~t~LrIwD~~f~eGskvlfr~ 354 (436)
T KOG2058|consen 276 PR-YYTPNLIGSQVDQKVLRELLREKLPKLSLHLEGNGVDASLETLPWFLTLFVDILPSETVLRIWDCLFYEGSKVLFRV 354 (436)
T ss_pred hh-hcCchhhhhhccHHHHHHHHHHHCHHHHHhhhhcCCCeeeeehhhhHHHhcccccHHHHHHHHHHHHhcccHHHHHH
Confidence 99 66668999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhcC-CHHHHHHHhcCCC
Q psy3426 159 GVSILKQLRETLLSS-GFNECILLFSDLP 186 (360)
Q Consensus 159 ~~ail~~~~~~ll~~-~~~~~l~~l~~~~ 186 (360)
++|+++..+++|++. +..++...++.+.
T Consensus 355 Alai~k~~ee~il~~~~~~~i~~~~~~~~ 383 (436)
T KOG2058|consen 355 ALAILKKHEEEILKEDSSKEILRVLPDLT 383 (436)
T ss_pred HHHHHHHhHHHHhcCCCHHHHHHHHHHHH
Confidence 999999999999994 5667777776655
No 4
>KOG1092|consensus
Probab=100.00 E-value=1.6e-33 Score=250.95 Aligned_cols=197 Identities=23% Similarity=0.441 Sum_probs=181.7
Q ss_pred ceeccCCccCCCCcccCChhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCC-------------------
Q psy3426 2 FCYFGFNLCHQYNELLSSKTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFND------------------- 62 (360)
Q Consensus 2 ~I~~Dv~Rt~~~~~~f~~~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~------------------- 62 (360)
+|..|++|+.|..++|+.+..++.+.|||..++.++|. .||+||.++++.|++.+++..
T Consensus 246 QI~id~prm~p~~~l~q~~~vq~~lerIl~iwairhpA--sGyvqgindlvtpf~vvfl~e~l~~~~~~~~~d~~~l~~E 323 (484)
T KOG1092|consen 246 QIPIDIPRMNPHIPLFQQKIVQEMLERILYIWAIRHPA--SGYVQGINDLVTPFFVVFLSEYLGPIMDVESIDMSLLPAE 323 (484)
T ss_pred ccccCCCCCCccccchhhHHHHHHHHHHHHHHHHhccc--ccccccceeeechhhhhhhHhhcCccccccccchhhccHH
Confidence 68999999999999999999999999999999999999 999999999999999877421
Q ss_pred -----hhHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCH
Q psy3426 63 -----EATAYACFSTFIPKYLHNFFLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPL 137 (360)
Q Consensus 63 -----e~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~ 137 (360)
|++||||+.++++....++.+. ++|++.....++.+++..|+.+++||+++|++...|+++|+.+|+.+++|+
T Consensus 324 ~~~~iEADsyWClskLLD~IQDNYtfa--QpGIq~kV~~L~eLv~RID~~~hkHlq~~gveylQFAFRWmNcLLmRE~pl 401 (484)
T KOG1092|consen 324 NAEDIEADAYWCLSKLLDGIQDNYTFA--QPGIQRKVKNLKELVQRIDEPLHKHLQEHGVEYLQFAFRWMNCLLMREFPL 401 (484)
T ss_pred HHhhhhhhHHHHHHHHHHHhhhhhhhc--ChhHHHHHHHHHHHHHHhcHHHHHHHHHhchHHHHHHHHHHHHHHHhhccc
Confidence 8999999999999966665443 799999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCC---CchHHHHHHHHHHHhHHHHhcCCHHHHHHHhcCCCC-----CCHHHHHHHHHHhHh
Q psy3426 138 HKIFHLWDKLLLGD---ASFPLFIGVSILKQLRETLLSSGFNECILLFSDLPE-----VDIEQSVTDSIDIYC 202 (360)
Q Consensus 138 ~~~~~iwD~~l~~~---~~~~~~v~~ail~~~~~~ll~~~~~~~l~~l~~~~~-----~d~~~li~~A~~l~~ 202 (360)
..++|+||.+++++ ..|++|||+|+|...+++|+++|+.+++.+|||+|. -+++.|+..|..+-.
T Consensus 402 ~~~iRlWDTY~aE~dgf~~FhvYvcAAFL~kW~~eL~e~DFQ~~ilfLQnlPT~~W~d~eIellLseA~~~k~ 474 (484)
T KOG1092|consen 402 RCTIRLWDTYLAEPDGFNEFHVYVCAAFLLKWSSELMENDFQELILFLQNLPTHNWSDREIELLLSEAFRLKS 474 (484)
T ss_pred hhHHHHHHHhhcCccchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhcCCCCCccHHHHHHHHHHHHHHHH
Confidence 99999999999985 357899999999999999999999999999999994 368889999987643
No 5
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=100.00 E-value=5.7e-33 Score=239.06 Aligned_cols=147 Identities=27% Similarity=0.546 Sum_probs=136.8
Q ss_pred ceeccCCccCCCCcccCC--hhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHhhhh
Q psy3426 2 FCYFGFNLCHQYNELLSS--KTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKYLH 79 (360)
Q Consensus 2 ~I~~Dv~Rt~~~~~~f~~--~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~~~ 79 (360)
+|++||+||+|.++.|++ ..++++|+|||.+|+.+||+ +||||||++||++|++++ .+|++|||+|.++|+++.+
T Consensus 49 ~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~~~~~~~p~--~gY~QGm~~i~~~ll~~~-~~e~~af~~~~~l~~~~~~ 125 (199)
T smart00164 49 QIEKDLRRTFPEHSFFQDKEGPGQESLRRVLKAYALYNPE--VGYCQGMNFLAAPLLLVM-PDEEDAFWCLVKLMERYGP 125 (199)
T ss_pred HHhcccCCCCCCchhhcCCCcccHHHHHHHHHHHHHHCCC--CceeccHHHHHHHHHHhc-CCHHHHHHHHHHHHHHhCc
Confidence 699999999999999985 45889999999999999999 999999999999999876 6899999999999999877
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHh-cCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhCCC
Q psy3426 80 NFFLRDNSAVVREYLSKFSHLIAFHDAELANHMSE-INFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLGDA 152 (360)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~-~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~~~ 152 (360)
.+ +.++.+++...+..++.+|+.++|+||+||.+ .++.+..|+.+|++++|++++|++.++||||.++.+|.
T Consensus 126 ~~-~~~~~~~~~~~~~~~~~ll~~~~p~l~~~l~~~~~i~~~~~~~~W~~~lF~~~~~~~~~~riwD~~l~eG~ 198 (199)
T smart00164 126 NF-YLPDMSGLQLDLLQLDRLVKEYDPDLYKHLKDKLGIDPSLYALRWFLTLFARELPLEIVLRIWDVLFAEGS 198 (199)
T ss_pred cc-CCCChHHHHHHHHHHHHHHHHHCHHHHHHHHHhcCCCchhHHHHHHHHHHHhhCCHHHHHHHHHHHHhcCC
Confidence 65 45667889999999999999999999999996 99999999999999999999999999999999999884
No 6
>KOG2223|consensus
Probab=100.00 E-value=1.2e-32 Score=245.63 Aligned_cols=191 Identities=21% Similarity=0.409 Sum_probs=178.1
Q ss_pred ceeccCCccCCCCcccC-ChhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHhhhhc
Q psy3426 2 FCYFGFNLCHQYNELLS-SKTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKYLHN 80 (360)
Q Consensus 2 ~I~~Dv~Rt~~~~~~f~-~~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~~~~ 80 (360)
.|++|+.||||...+|+ +...++.|-.+|.+|..+.|+ +||+|||.+|+|++++- .++.+||.+|.+++++.++.
T Consensus 358 ~i~LDisrTfpsl~iFqk~GPy~d~L~~lL~AYt~yRpD--vgYVqgmSFIaAvLlln--md~~~AFiafANLLdkp~q~ 433 (586)
T KOG2223|consen 358 LIKLDISRTFPSLSIFQKGGPYHDDLHSLLGAYTCYRPD--VGYVQGMSFIAAVLLLN--MDLADAFIAFANLLDKPCQQ 433 (586)
T ss_pred heeechhccCcceeeeccCCchHHHHHHHhhhheeecCc--cccccchHHHHHHHHHc--CCcHHHHHHHHHHhccHHHH
Confidence 58999999999999996 678889999999999999999 99999999999987763 58999999999999998888
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhCCCchHHHHHH
Q psy3426 81 FFLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLGDASFPLFIGV 160 (360)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~~~~~~~~v~~ 160 (360)
.|+.-+.+.+..++..|+..++...|+|+.||.+.++.|+.|.+.|+.+||+..+|++..+||||+|+.+|..|+|..++
T Consensus 434 Aff~~d~s~m~~yf~tfe~~leenlp~L~~Hl~kl~l~PDiylidwiftlyskslpldlacRIwDvy~rdgeeFlfr~~l 513 (586)
T KOG2223|consen 434 AFFRVDHSSMLSYFATFEVFLEENLPKLFTHLKKLELTPDIYLIDWIFTLYSKSLPLDLACRIWDVYCRDGEEFLFRTAL 513 (586)
T ss_pred HHHhcCcHHHHHHHHHHHHHHHhccHHHHHHHHhccCCCchhhHHHHHHHHhccCChHHhhhhhheeeecchHHHHHHHH
Confidence 88777788899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHhcCCHHHHHHHhcCCC-CCCHHHHHHH
Q psy3426 161 SILKQLRETLLSSGFNECILLFSDLP-EVDIEQSVTD 196 (360)
Q Consensus 161 ail~~~~~~ll~~~~~~~l~~l~~~~-~~d~~~li~~ 196 (360)
+|++.++++|+.+|+..+.+++..+| ++..++++..
T Consensus 514 gIlklyepkLl~mDf~~~~qfLtklp~dL~~eelF~~ 550 (586)
T KOG2223|consen 514 GILKLYEPKLLVMDFIHVAQFLTKLPEDLTPEELFMH 550 (586)
T ss_pred HHHHHccchHhhhhHHHHHHHHHhCcccCCHHHHHHH
Confidence 99999999999999999999999998 4556665544
No 7
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.98 E-value=6.5e-32 Score=235.11 Aligned_cols=165 Identities=35% Similarity=0.669 Sum_probs=148.3
Q ss_pred ceeccCCccCCCCcccCChhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHhhhhcc
Q psy3426 2 FCYFGFNLCHQYNELLSSKTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKYLHNF 81 (360)
Q Consensus 2 ~I~~Dv~Rt~~~~~~f~~~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~~~~~ 81 (360)
+|++|+.||+++...+++...++.|++||.+|+.++|+ +||+|||++|+++++.+. .+|++|||+|.+++....+.+
T Consensus 49 ~I~~Dv~rt~~~~~~~~~~~~~~~l~~iL~~~~~~~~~--~~Y~qG~~~i~~~ll~~~-~~e~~af~~~~~l~~~~~~~~ 125 (214)
T PF00566_consen 49 QIDKDVNRTFPNSFLFKNEQNQKSLERILSAYAKYNPD--VGYCQGMNDIAAPLLLVF-LDEEEAFWCFVQLLNYYLPDF 125 (214)
T ss_dssp HHHHHHCTSSTSCCCSTTHHHHHHHHHHHHHHHHHTTT--TSS-TTHHHHHHHHHHTC-SHHHHHHHHHHHHHTHHGGGG
T ss_pred HHHHhhhhhcccchhhhhcchHHHHHHHHHHhcccccc--ccccchhhhhhhhhhhhc-ccccchhccccchhccccccc
Confidence 57899999999778888999999999999999999999 999999999999998766 689999999999995556665
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhCCCch-HHHHHH
Q psy3426 82 FLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLGDASF-PLFIGV 160 (360)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~~~~~-~~~v~~ 160 (360)
+. ++.+++...+..++.++++++|+|++||.+.++.+..|+.+|+.++|++.+|.+.++|+|| ++.+|.++ ++++++
T Consensus 126 ~~-~~~~~~~~~~~~~~~ll~~~~P~l~~~l~~~~~~~~~~~~~w~~~lF~~~l~~~~~~~lwD-~l~~g~~~~l~~~~l 203 (214)
T PF00566_consen 126 FQ-PNFKGLQKILKIFEQLLKKHDPELYNHLKQLGVDPEIYAFPWFLTLFSRSLPFDDVLRLWD-FLLEGYKFFLFFIAL 203 (214)
T ss_dssp TS-TTHHHHHHHHHHHHHHHHHHTHHHHHHHHHTT-GGHHHHHHHHHTTTTTTS-HHHHHHHHH-HHHHCTTHHHHHHHH
T ss_pred cc-ccccccchhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhhhhhhHhhcCCcCCHHHHHHHHH-HHHcCCCcHHHHHHH
Confidence 54 4578899999999999999999999999999999999999999999999999999999999 66688777 999999
Q ss_pred HHHHHhHHHHh
Q psy3426 161 SILKQLRETLL 171 (360)
Q Consensus 161 ail~~~~~~ll 171 (360)
|++...|++||
T Consensus 204 ail~~~~~~il 214 (214)
T PF00566_consen 204 AILKYLRDQIL 214 (214)
T ss_dssp HHHHHTHHHHH
T ss_pred HHHHHHHHHhC
Confidence 99999999986
No 8
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.97 E-value=9e-31 Score=253.71 Aligned_cols=176 Identities=29% Similarity=0.491 Sum_probs=163.1
Q ss_pred ceeccCCccCCCCcccCChhhHHH--HHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHh-hh
Q psy3426 2 FCYFGFNLCHQYNELLSSKTGHTK--LKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPK-YL 78 (360)
Q Consensus 2 ~I~~Dv~Rt~~~~~~f~~~~~~~~--L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~-~~ 78 (360)
+|++||.||+|.+..|+....++. |+|||.+|+.+||+ +||||||++++++|++++ .+|++||||++++|++ ++
T Consensus 259 ~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~--vgY~QgMn~l~a~ll~~~-~~Ee~AF~~l~~L~~~~~l 335 (496)
T COG5210 259 QIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPE--VGYVQGMNFLAAPLLLVL-ESEEQAFWCLVKLLKNYGL 335 (496)
T ss_pred HHHccccccccccccccCcccccHHHHHHHHHHHHhcCCC--CceeccHHHHHHHHHHHh-hhhHHHHHHHHHHHHhccc
Confidence 689999999999999988777766 99999999999999 999999999999999987 5699999999999994 57
Q ss_pred hccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhCCCchHHHH
Q psy3426 79 HNFFLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLGDASFPLFI 158 (360)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~~~~~~~~v 158 (360)
+.+|.. +++|+...+..+..+++..+|+||+||...++....|+++||+++|.+.+|++.++||||.+|.+|..+++.+
T Consensus 336 ~~~~~~-~~~G~~~~~~~l~~~v~~~~p~l~~hl~~~~~~~~~~~~~w~l~lF~~~~p~e~~lriwD~lf~eg~~~l~~~ 414 (496)
T COG5210 336 PGYFLK-NLSGLHRDLKVLDDLVEELDPELYEHLLREGVVLLMFAFRWFLTLFVREFPLEYALRIWDCLFLEGSSMLFQL 414 (496)
T ss_pred hhhccc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhHHHHHHHHHhcCCHHHHHHHHHHHHHhccHHHHHH
Confidence 776655 6899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhcCCHHHHHHH
Q psy3426 159 GVSILKQLRETLLSSGFNECILL 181 (360)
Q Consensus 159 ~~ail~~~~~~ll~~~~~~~l~~ 181 (360)
++|++...+++++.++.+..+..
T Consensus 415 ~~~~l~~~~~~l~~~~~~~~~~~ 437 (496)
T COG5210 415 ALAILKLLRDKLLKLDSDELLDL 437 (496)
T ss_pred HHHHHHhhhhhhhccCchhHHHH
Confidence 99999999999999877655544
No 9
>KOG3636|consensus
Probab=99.96 E-value=7.7e-29 Score=222.04 Aligned_cols=309 Identities=17% Similarity=0.324 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHHHcCCCCCcccC--ChhHHHHHHHHHhcCChhHHHHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHHH
Q psy3426 24 TKLKRVLKAWVTSHPQFDFVYWQ--GLDSLCAPFVFLNFNDEATAYACFSTFIPKYLHNFFLRDNSAVVREYLSKFSHLI 101 (360)
Q Consensus 24 ~~L~~iL~~~~~~~p~~~i~Y~Q--Gm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~lL 101 (360)
..|+.++.-|++.+ + +.|.. |+..+.-|++.+. -+..+.|.+|..++.+|+|.-..+... .+..|+.+|
T Consensus 93 ~dlES~iTfYCK~R-n--~~Y~~d~gWi~lL~pl~~L~-lprsd~fN~F~ai~~kYIPkdcrpkg~-----~Fh~FRLLl 163 (669)
T KOG3636|consen 93 SDLESFITFYCKKR-N--MDYIKDIGWITLLEPLLLLN-LPRSDEFNVFFAITTKYIPKDCRPKGQ-----IFHLFRLLL 163 (669)
T ss_pred HhhhhHhhhhhhcc-C--CcccccccHHHHHHHHHHhc-CCcchhhhhhHhhhhcccCCCCCCCCc-----cchHHHHHH
Confidence 47899999998754 3 56765 7888999988887 467889999999999999997665433 457899999
Q ss_pred HHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhCCCc-hHHHHHHHHHHHhHHHHhcC---CHHH
Q psy3426 102 AFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLGDAS-FPLFIGVSILKQLRETLLSS---GFNE 177 (360)
Q Consensus 102 ~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~~~~-~~~~v~~ail~~~~~~ll~~---~~~~ 177 (360)
++|||+|++||....+.|++|+..||-+||+...+.+.+..+||.++..+.. +++++++-+|+.-|++|+.+ ..++
T Consensus 164 qYHdPelc~~LdtkkitPd~Y~lnWf~sLFas~~Stev~~a~WdlY~qqaDPF~vffLaliiLiNake~ILq~~sdsKEe 243 (669)
T KOG3636|consen 164 QYHDPELCNHLDTKKITPDMYTLNWFASLFASSMSTEVCHALWDLYIQQADPFLVFFLALIILINAKEEILQVKSDSKEE 243 (669)
T ss_pred HhcCHHHhhhhhccccCchHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCceehHHHHHHHhcccHHHHhhhccccHHH
Confidence 9999999999999999999999999999999999999999999999988655 56788999999999999984 3579
Q ss_pred HHHHhcCCC----CCCHHHHHHHHHHhHhhCCCccccccccc--c-chhhhhhhhhhhhhhhcccccccCHHHHHHHhhh
Q psy3426 178 CILLFSDLP----EVDIEQSVTDSIDIYCVTPRSITFRMHES--E-STLLEGALLQRHNQALSEFCSSLSSTDLLDLINT 250 (360)
Q Consensus 178 ~l~~l~~~~----~~d~~~li~~A~~l~~~~P~s~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~is~~~l~~~~~~ 250 (360)
+++++.++| -.||..+++.|..+..+||.||....+-. + ..+.+. ....+..+..|-.|++-++...-+.
T Consensus 244 ~ikfLenmp~~L~~eDvpDffsLAqyY~~KTP~sfrkD~~~~lfGn~~~~~~---~~~~~~sqaLCLpisv~el~~~~~~ 320 (669)
T KOG3636|consen 244 AIKFLENMPAQLSVEDVPDFFSLAQYYSDKTPESFRKDFHYILFGNANFDEE---VKEIQMSQALCLPISVIELTSHDEI 320 (669)
T ss_pred HHHHHHcCchhcccccchhHHHHHHHHhhcChHHhhhhhhHhhhcCCCccch---hhhhHHhhhhccchhHHHhhccccc
Confidence 999999988 36899999999999999999965442211 1 112221 1445677788999999998875444
Q ss_pred cCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCC------hhhhhHHh---cCCCeEEEEcCCCch
Q psy3426 251 RFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESS------PEMNILFN---NKGSIIVIVGGEDSM 321 (360)
Q Consensus 251 ~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~iv~~c~~g~~ 321 (360)
+...-++.+||||+.++|..||+..|.|++..-.. ..+..++.+ ...+.... ..+.|+++++.+..+
T Consensus 321 ~~~~VrFFiVDcRpaeqynaGHlstaFhlDc~lml----qeP~~Fa~av~sLl~aqrqtie~~s~aggeHlcfmGsGr~E 396 (669)
T KOG3636|consen 321 SSGSVRFFIVDCRPAEQYNAGHLSTAFHLDCVLML----QEPEKFAIAVNSLLCAQRQTIERDSNAGGEHLCFMGSGRDE 396 (669)
T ss_pred ccCceEEEEEeccchhhcccccchhhhcccHHHHh----cCHHHHHHHHHHHHHHHHHhhhccccCCcceEEEeccCcch
Confidence 44556788999999999999999999999876432 011111100 00011111 145799999988763
Q ss_pred ----hHHHHHHHHHHcCCCcEEEecccccccc
Q psy3426 322 ----RQAKFARFIVRLGFPKVTYVHEHVNSFE 349 (360)
Q Consensus 322 ----~s~~~~~~L~~~G~~~v~~l~GG~~~w~ 349 (360)
.-+.+|.+|+ .|-..|+.+.||+.+.+
T Consensus 397 ED~YmnMviA~FlQ-Knk~yVS~~~GGy~~lh 427 (669)
T KOG3636|consen 397 EDNYMNMVIAMFLQ-KNKLYVSFVQGGYKKLH 427 (669)
T ss_pred HHHHHHHHHHHHHh-cCceEEEEecchHHHHH
Confidence 3445666665 56668999999998665
No 10
>KOG1091|consensus
Probab=99.95 E-value=3e-27 Score=217.92 Aligned_cols=203 Identities=24% Similarity=0.398 Sum_probs=168.0
Q ss_pred ceeccCCccCCCC-cccCChhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCC------------------
Q psy3426 2 FCYFGFNLCHQYN-ELLSSKTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFND------------------ 62 (360)
Q Consensus 2 ~I~~Dv~Rt~~~~-~~f~~~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~------------------ 62 (360)
.|+.|+.||||.+ .+|+++..+..|++||..|+..||. +||-||||++.||++++.+-|
T Consensus 107 ~i~qDvsRtfPe~~~fFqs~~~q~mLr~iLl~~~lehp~--i~YrQGMHElLAPl~fVl~~D~q~l~h~se~~~~~l~f~ 184 (625)
T KOG1091|consen 107 TIDQDVSRTFPEHSLFFQSPEVQGMLRRILLLYALEHPE--IGYRQGMHELLAPLLFVLHVDNQALLHVSESLFDKLGFE 184 (625)
T ss_pred hhcchhhccCcchhhhhcCchhhHHHHHHHHHHHhhchh--hhHHhhhhhhhhhhhhheehhHHHHHHHHHhhhhhcCcc
Confidence 4789999999999 8888999999999999999999999 999999999999999988644
Q ss_pred -----------hhHHH--HHHHHHHHh--hh---hccC-----------------CCCChHHHHHHHHHHHHHHHHHcHH
Q psy3426 63 -----------EATAY--ACFSTFIPK--YL---HNFF-----------------LRDNSAVVREYLSKFSHLIAFHDAE 107 (360)
Q Consensus 63 -----------e~~~f--~~~~~l~~~--~~---~~~~-----------------~~~~~~~~~~~~~~~~~lL~~~dp~ 107 (360)
+.+++ .+++.+|-. +. ...+ +....+.+......+..+|...|+.
T Consensus 185 E~d~iy~~~y~k~d~dn~~lqs~lmls~~~~~e~e~g~~~~e~~ie~day~~~d~l~~~l~~v~e~~~~~~~lL~~~D~~ 264 (625)
T KOG1091|consen 185 ERDVIYNFLYLKTDLDNTELQSVLMLSDEYGYEEELGIVLSEKLIEHDAYVMFDALMPGLPPVFEANFAQYHLLAKVDKS 264 (625)
T ss_pred hhhhhhhHHHHhhhccchhHHHHHHhhhccccccCcceecCcccCCcCcccchhhhcccchhHHHHhhhhhhhhhhccHH
Confidence 22333 344455411 00 0000 0112334566677889999999999
Q ss_pred HHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHH-HHhhCCCch--HHHHHHHHHHHhHHHHhcCCHHHHHHHhcC
Q psy3426 108 LANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWD-KLLLGDASF--PLFIGVSILKQLRETLLSSGFNECILLFSD 184 (360)
Q Consensus 108 L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD-~~l~~~~~~--~~~v~~ail~~~~~~ll~~~~~~~l~~l~~ 184 (360)
|+.||.+.++.|++|.++|+..||.++||+.+++.+|| ++++.++.. +-+++++||.++|+.|+..+...+++.+.+
T Consensus 265 Lh~HL~~l~i~pqifgiRWlRlLFGREfpL~dLLiVWD~~l~~d~pr~~Lv~~m~VsmLL~IRd~Llss~~~tcL~~Lm~ 344 (625)
T KOG1091|consen 265 LHSHLVELGIEPQIFGIRWLRLLFGREFPLQDLLIVWDHVLIFDSPRGILVACMFVSMLLYIRDSLLSSEYQTCLQYLMN 344 (625)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHcchhHHHHHHHHhhhhhhccCchHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHhc
Confidence 99999999999999999999999999999999999999 777777654 559999999999999999999999999999
Q ss_pred CC-CCCHHHHHHHHHHhHhhCCC
Q psy3426 185 LP-EVDIEQSVTDSIDIYCVTPR 206 (360)
Q Consensus 185 ~~-~~d~~~li~~A~~l~~~~P~ 206 (360)
+| .+|++++|+.|.-+.+-.|+
T Consensus 345 yP~~~Dv~~~iekAl~l~~~~~K 367 (625)
T KOG1091|consen 345 YPEIIDVDKFIEKALHLQKLFPK 367 (625)
T ss_pred CCCcCcHHHHHHHHHHHHHhccc
Confidence 98 58999999999999864444
No 11
>KOG2222|consensus
Probab=99.94 E-value=9.5e-27 Score=210.18 Aligned_cols=195 Identities=21% Similarity=0.335 Sum_probs=179.9
Q ss_pred ceeccCCccCCCCcccC--ChhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHhhhh
Q psy3426 2 FCYFGFNLCHQYNELLS--SKTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKYLH 79 (360)
Q Consensus 2 ~I~~Dv~Rt~~~~~~f~--~~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~~~ 79 (360)
+|++|+-|+.|++.-|. +.++..+|+|||.+.+...|+ +||||||.-|++.+|+.+ +|+.|||++..+++..+|
T Consensus 214 qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpd--igycqg~gviva~lllf~--~ee~afwmmaaiiedilp 289 (848)
T KOG2222|consen 214 QIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPD--IGYCQGMGVIVACLLLFC--EEENAFWMMAAIIEDILP 289 (848)
T ss_pred HHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCC--cccccCccHHHHHHHHHh--cchhHHHHHHHHHHHhcC
Confidence 79999999999999995 678899999999999999999 999999999999988766 788899999999999888
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhCCCchHHHHH
Q psy3426 80 NFFLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLGDASFPLFIG 159 (360)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~~~~~~~~v~ 159 (360)
.-|++...-|++........++.-+.|.|-+.|+.+++..+..+..||+|||+..+.....+||||+||.+|..-+|.++
T Consensus 290 ~nfysqtllgiqaderv~~~li~~~l~~ldeal~~~dielslitl~w~ltlf~nv~~~killriwd~~fy~g~i~ifql~ 369 (848)
T KOG2222|consen 290 ANFYSQTLLGIQADERVMHHLIACHLPDLDEALEDHDIELSLITLHWFLTLFANVFHMKILLRIWDFFFYEGGINIFQLI 369 (848)
T ss_pred chhhhhhHhccchhHHHHHHHHHhccCchhHHHHhccceeeehHHHHHHHHHHHHHHHHHHHHHHHhheecCcchhHHHH
Confidence 88887778888888889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhc-----CCHHHHHHHhcCCC--CCCHHHHHHHHHHh
Q psy3426 160 VSILKQLRETLLS-----SGFNECILLFSDLP--EVDIEQSVTDSIDI 200 (360)
Q Consensus 160 ~ail~~~~~~ll~-----~~~~~~l~~l~~~~--~~d~~~li~~A~~l 200 (360)
+++|+..+++|.. .++.++...++.+| ..||++++..|..+
T Consensus 370 i~ilkmkeqdi~~iaettensa~if~als~ip~~vtdve~l~~~~~~~ 417 (848)
T KOG2222|consen 370 IGILKMKEQDIKEIAETTENSADIFNALSDIPAEVTDVEKLFEQAGEF 417 (848)
T ss_pred HHHHHhhHHHHHHHHHhcccHHHHHHHHHhCCchhhhHHHHHHHHhhc
Confidence 9999999999876 36778888899999 46899999998775
No 12
>KOG4347|consensus
Probab=99.92 E-value=3.2e-25 Score=208.02 Aligned_cols=194 Identities=19% Similarity=0.346 Sum_probs=170.5
Q ss_pred eeccCCccCCCCcccCChhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHhhhhccC
Q psy3426 3 CYFGFNLCHQYNELLSSKTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKYLHNFF 82 (360)
Q Consensus 3 I~~Dv~Rt~~~~~~f~~~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~~~~~~ 82 (360)
||.|++|..|.|+-|+++.+..+|+|||.+|++.||+ |||||-||.+++.+++.+ .|+.+||+++.+++++++.+|
T Consensus 247 IE~Dl~rsLpEhpA~Q~e~gi~aLR~vL~Aya~~Np~--vGYcQaMNIV~s~lll~~--~EEeafwll~~lce~~ip~yy 322 (671)
T KOG4347|consen 247 IEPDLGRSLPEHPAFQSEPGIAALRRVLTAYAWSNPE--VGYCQAMNIVGSELLLFC--KEEEAFWLLSKLCEIYIPDYY 322 (671)
T ss_pred ccCCCCCCCCcchhhhCCCchhhHHHHHHhhhccCCc--hhHHHHHHHHHHhhhhhh--ccchHHHHHHHHHHHhccccc
Confidence 7899999999999999999999999999999999999 999999999999988765 688899999999999999977
Q ss_pred CCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhCCCchHHHHHHHH
Q psy3426 83 LRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLGDASFPLFIGVSI 162 (360)
Q Consensus 83 ~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~~~~~~~~v~~ai 162 (360)
.. ..-|.......|+.+++.+.|.|++|+...+ ...+..++||+++|...+|++..+||.|+||.+|+..+|-+++|+
T Consensus 323 s~-~vvGtliDQ~vfe~lve~~lP~l~~~~~~l~-~l~~Vsl~WFlslFls~m~le~a~~ilD~FF~eG~rvlFqiaLai 400 (671)
T KOG4347|consen 323 SK-TVVGTLIDQSVFEELVEDTLPVLGEHLAVLG-QLSTVSLSWFLSLFLSLMPLEYAVRILDCFFYEGPRVLFQIALAI 400 (671)
T ss_pred ch-hhhhhHHHHHHHHHHHHHhhhHHHHHhhhhc-ccceEeeHHHHHHHHHHcchHHHHHHHhhhhhcccHHHHHHHHHH
Confidence 65 4556666778899999999999999999999 667889999999999999999999999999999999999999999
Q ss_pred HHHhHHHHhcC-CHHHHHHHhcC----CC-------------CCCHHHHHHHHHHhHh
Q psy3426 163 LKQLRETLLSS-GFNECILLFSD----LP-------------EVDIEQSVTDSIDIYC 202 (360)
Q Consensus 163 l~~~~~~ll~~-~~~~~l~~l~~----~~-------------~~d~~~li~~A~~l~~ 202 (360)
+....+.|++. |-.+.+..+++ +- .+.++.|+..|.+-+.
T Consensus 401 l~~N~~~il~~~dDge~~~vl~~y~~~i~~~~~~~~~~~~~~~~~i~~Ll~~ay~kFg 458 (671)
T KOG4347|consen 401 LKQNAERILSATDDGEAMMVLGNYFDSIYNGDYPDESDHASDSIEIQDLLATAYEKFG 458 (671)
T ss_pred HHhhHHHhcccCCchHHHHHHHHHHHhccCCCCCccccchhhhhHHHHHHHHHHHHhc
Confidence 99999999994 44455544433 21 2337778888877765
No 13
>KOG2595|consensus
Probab=99.92 E-value=6e-24 Score=185.13 Aligned_cols=202 Identities=18% Similarity=0.323 Sum_probs=174.6
Q ss_pred CceeccCCccCCCCcccC----ChhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHh
Q psy3426 1 MFCYFGFNLCHQYNELLS----SKTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPK 76 (360)
Q Consensus 1 ~~I~~Dv~Rt~~~~~~f~----~~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~ 76 (360)
+|+.+|++|++...+.-. ....++.|..++..-...+|+ +.|.||+|+||..|++++ .|.+|+.+..++-..
T Consensus 98 nQV~LDv~RSl~rfppg~p~~~R~~Lq~qL~~LI~rVl~~yP~--L~YYQGyHDI~~tfLLv~--gE~~Al~l~E~L~~~ 173 (395)
T KOG2595|consen 98 NQVILDVERSLGRFPPGIPKELRLQLQKQLTELILRVLRKYPT--LNYYQGYHDIVVTFLLVV--GELEALSLMEELSTL 173 (395)
T ss_pred ceEEEehhhhhccCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC--cchhcchhHHHHHHHHhh--hhHhhhHHHHHHHHH
Confidence 588999999976655322 224456788888888899999 999999999999999988 688899999999877
Q ss_pred hhhccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccC-CHHHHHHHHHHHhhCCCchH
Q psy3426 77 YLHNFFLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVL-PLHKIFHLWDKLLLGDASFP 155 (360)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l-~~~~~~~iwD~~l~~~~~~~ 155 (360)
++.++..+ ...+....++.+..+++..+|+||+.|++..+.+ +|+.+|++|||+|.+ ++..++|++|+|++..+-..
T Consensus 174 ~lrdfM~~-Tld~t~~qL~~i~~iIk~~nP~Ly~~l~~aevgt-lFaLsWllTWFaH~L~~~~~vvRlfD~Flas~pl~p 251 (395)
T KOG2595|consen 174 HLRDFMLP-TLDFTVRQLRLISPIIKEVNPELYQFLQSAEVGT-LFALSWLLTWFAHNLKDIRIVVRLFDFFLASHPLLP 251 (395)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhhcChHHHHHHHhhcccc-eehhhHHHHHHhhcchhHHHHHHHHHHHHhcCcchh
Confidence 77776554 4677788899999999999999999999998885 689999999999999 58999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhcCCHHHHHH--HhcCCC-CCCHHHHHHHHHHhHhhCCCcc
Q psy3426 156 LFIGVSILKQLRETLLSSGFNECIL--LFSDLP-EVDIEQSVTDSIDIYCVTPRSI 208 (360)
Q Consensus 156 ~~v~~ail~~~~~~ll~~~~~~~l~--~l~~~~-~~d~~~li~~A~~l~~~~P~s~ 208 (360)
+|++.+++...+++|++.+.+..+. .++.+| +..++++|+.+..+..+-|.+.
T Consensus 252 iyv~A~vvL~r~~eIl~~~~dms~~H~lLs~iPq~lp~d~lik~s~~~i~~~~~t~ 307 (395)
T KOG2595|consen 252 IYVYAAVVLYRRSEILKCDCDMSLLHGLLSTIPQDLPYDTLIKESVLLITRKPATL 307 (395)
T ss_pred HHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhCccccCHHHHHHHHHHHHhcCChhh
Confidence 9999999999999999976655444 388888 7899999999999999988883
No 14
>KOG4436|consensus
Probab=99.90 E-value=5.5e-23 Score=196.15 Aligned_cols=181 Identities=22% Similarity=0.345 Sum_probs=162.7
Q ss_pred ceeccCCccCCCCcccCC--hhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHhhhh
Q psy3426 2 FCYFGFNLCHQYNELLSS--KTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKYLH 79 (360)
Q Consensus 2 ~I~~Dv~Rt~~~~~~f~~--~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~~~ 79 (360)
.|-.|+-||||+|++|+. +.++..+.|+|.+|+...|+ +|||||...+|+++|+.+ +|+.||.++..+|-....
T Consensus 624 Ai~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e--~gycqg~~fv~gvlllh~--~e~~afellk~LM~~r~~ 699 (948)
T KOG4436|consen 624 AILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPE--VGYCQGLSFVAGVLLLHM--SEENAFELLKFLMFDRGM 699 (948)
T ss_pred HHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCcc--ccccCcchhhhhhhHhhc--chhhHHHHHHHHHHHHhh
Confidence 467899999999999975 56788999999999999999 999999999999988865 899999999999954333
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhCCCchHHHHH
Q psy3426 80 NFFLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLGDASFPLFIG 159 (360)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~~~~~~~~v~ 159 (360)
.--+.+++..++..+..+..++..+.++||+|++++.+.|..|+.+|++|.|+..+|...+.|++|.++..|...++.++
T Consensus 700 r~qy~pdm~~lq~qmyqLsrl~hd~hrdlyn~le~~ei~pslyAapw~lt~fasQf~lGfvarvfd~~flq~tevifK~a 779 (948)
T KOG4436|consen 700 RKQYRPDMKKLQIQMYQLSRLLHDYHRDLYNHLEENEISPSLYAAPWFLTVFASQFPLGFVARVFDLIFLQGTEVIFKVA 779 (948)
T ss_pred HhhhchHHHHHHHHHHHHHHHHHHHhHHHHHHHHhcccChHHhhhHHHHHHHHhhCcchHHHHHHHHHHhhccchhhhhH
Confidence 33333457778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhcC-CHHHHHHHhcCCC
Q psy3426 160 VSILKQLRETLLSS-GFNECILLFSDLP 186 (360)
Q Consensus 160 ~ail~~~~~~ll~~-~~~~~l~~l~~~~ 186 (360)
+++|...|..|+.. ++.+++.++++..
T Consensus 780 ~~llsv~k~~l~e~dn~e~i~d~~k~~~ 807 (948)
T KOG4436|consen 780 LSLLSVHKQLLLEKDNFEEIVDFLKTTL 807 (948)
T ss_pred HHHHHhhHHHHHhhhhHHHHHHHHHHhh
Confidence 99999999999995 5788999988854
No 15
>KOG2224|consensus
Probab=99.89 E-value=1.5e-22 Score=181.25 Aligned_cols=198 Identities=19% Similarity=0.342 Sum_probs=159.0
Q ss_pred eeccCCccCCCCcccCC--hhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHhh---
Q psy3426 3 CYFGFNLCHQYNELLSS--KTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKY--- 77 (360)
Q Consensus 3 I~~Dv~Rt~~~~~~f~~--~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~--- 77 (360)
+++||.||.+++++|.. ..+-+.++|||..|+.+||. +||.|||.++.+|.+.-. .+|.++||||+.+|+.+
T Consensus 499 vdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~--m~ysqgmsdllapvlcev-qnesetfwcfvglmqgmsdl 575 (781)
T KOG2224|consen 499 VDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPA--MGYSQGMSDLLAPVLCEV-QNESETFWCFVGLMQGMSDL 575 (781)
T ss_pred EecceeeccCCCCcccCCCCCcHHHHHHHHHhheeeccc--ccccccchhhcchhhhhh-ccccchhhhhhhhhccchhh
Confidence 68999999999999974 35568999999999999999 999988888777766554 45555666666665421
Q ss_pred ---------------------hh-ccC-CCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCC--ccchHHHHHHHhc
Q psy3426 78 ---------------------LH-NFF-LRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIP--ELFAIPWFLTMFS 132 (360)
Q Consensus 78 ---------------------~~-~~~-~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~--~~~~~~W~~~lF~ 132 (360)
++ .+| .++....+...+.-+..+++...|..|+||.++|-+. ..||.+|++.+|.
T Consensus 576 vapilaevldesdtfwcfvglmqna~fv~sp~d~dmd~~l~ylreliri~~~~fykhl~q~~ed~lellfchrwlllcfk 655 (781)
T KOG2224|consen 576 VAPILAEVLDESDTFWCFVGLMQNAFFVCSPRDEDMDHNLLYLRELIRIMHPHFYKHLEQHGEDGLELLFCHRWLLLCFK 655 (781)
T ss_pred hhhHHHhhhccccchhhhhhhhcceEEEeCCcchhhhHhHHHHHHHHHHhhHHHHHHHHHhCcchhhHHHHHHHHHHHhh
Confidence 01 111 3344555677778899999999999999999998443 3589999999999
Q ss_pred ccCCHHHHHHHHHHHhhCC--CchHHHHHHHHHHHhHHHHhcC--CHHHHHHHhcCCC-CCCHHHHHHHHHHhHhh
Q psy3426 133 HVLPLHKIFHLWDKLLLGD--ASFPLFIGVSILKQLRETLLSS--GFNECILLFSDLP-EVDIEQSVTDSIDIYCV 203 (360)
Q Consensus 133 ~~l~~~~~~~iwD~~l~~~--~~~~~~v~~ail~~~~~~ll~~--~~~~~l~~l~~~~-~~d~~~li~~A~~l~~~ 203 (360)
+++|-..++|+|+..++.- .-|.+|+|+||+..+-+..+.. -.++++..|.++. -+|-+-++..|..+..+
T Consensus 656 ref~ea~airiweacwa~y~tdyfhlficlaiiaiy~ddvi~q~l~~demllhf~nlam~mdgelilrkar~ll~q 731 (781)
T KOG2224|consen 656 REFPEAEAIRIWEACWAHYLTDYFHLFICLAIIAIYADDVIAQNLAPDEMLLHFGNLAMHMDGELILRKARGLLHQ 731 (781)
T ss_pred hcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhhHHHHhhcCchhHHHhhhhhhhhcCchhhHHHHHHHHHH
Confidence 9999999999999999763 4578899999999999999884 4678888899987 57888999999888653
No 16
>KOG2197|consensus
Probab=99.88 E-value=1.1e-22 Score=193.48 Aligned_cols=200 Identities=21% Similarity=0.351 Sum_probs=176.5
Q ss_pred eeccCCccCCCCcccCChhh--HHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHhhhhc
Q psy3426 3 CYFGFNLCHQYNELLSSKTG--HTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKYLHN 80 (360)
Q Consensus 3 I~~Dv~Rt~~~~~~f~~~~~--~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~~~~ 80 (360)
|++||.||.+.+.++..... ...|..||.+|+.++++ +||||||+++.+|++.+. .+|.+|||||+.+|++..++
T Consensus 241 i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d--~GY~QgmSDllspi~~v~-~de~~aFwcFv~fm~~~~~n 317 (488)
T KOG2197|consen 241 IEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFD--LGYCQGMSDLLSPILIVM-EDEVEAFWCFVGFMDRLRHN 317 (488)
T ss_pred hhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCc--cccccCchhhcCcceeee-cCchHHHHHHHHHHHHHhhc
Confidence 68999999999999986666 88999999999999999 999999999999999987 89999999999999997777
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhC--CCchHHHH
Q psy3426 81 FFLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLG--DASFPLFI 158 (360)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~--~~~~~~~v 158 (360)
+... ..++...+..+..+++..||.+|+||++.+.....++++|+..+|-+++..++++++|+.+++. ..+|.+++
T Consensus 318 F~~d--~~~~~~Ql~~~~~li~~~dp~l~~hLe~~d~~~~~f~fr~l~v~frrEf~~ed~l~LWEvlw~~~~~~~f~~~~ 395 (488)
T KOG2197|consen 318 FRID--QSGMQTQLAQLSSLIQELDPRLYQHLEKLDAGDLFFCFRMLLVPFRREFEFEDSLRLWEVLWTDLPSPHFHLYV 395 (488)
T ss_pred Cccc--cccHHHHhhhhhhhccccCHHHHhhccccCCCccceeeehhhcccccccccccHHHHHHHHHhcCccchHHHHH
Confidence 5443 5678888899999999999999999999999999999999999999999999999999999976 45789999
Q ss_pred HHHHHHHhHHHHhc--CCHHHHHHHhcCCC-CCCHHHHHHHHHHhHhhCCCc
Q psy3426 159 GVSILKQLRETLLS--SGFNECILLFSDLP-EVDIEQSVTDSIDIYCVTPRS 207 (360)
Q Consensus 159 ~~ail~~~~~~ll~--~~~~~~l~~l~~~~-~~d~~~li~~A~~l~~~~P~s 207 (360)
+.+++..-.+.|+. .++.+++.+++... ..|+..++..|..+..+.-..
T Consensus 396 ~~~~l~~~~~~l~~~~~~~~e~l~~i~~~~~~~d~~~~~~~A~~~~~~~k~~ 447 (488)
T KOG2197|consen 396 APAILNKDPQTLMEQGKSFNEVLKHVNLLSEKADVLWVLVRAEALERQNKQM 447 (488)
T ss_pred HHhhhhcchHHHHhcCccchhHHhhcccccccchhhhHHHHHHHHHHHHHhc
Confidence 99999998888888 45677777776665 678888888888887654333
No 17
>cd01533 4RHOD_Repeat_2 Member of the Rhodanese Homology Domain superfamily, repeat 2. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 2nd repeat which does contain the putative catalytic Cys residue.
Probab=99.85 E-value=8.9e-22 Score=152.35 Aligned_cols=101 Identities=23% Similarity=0.312 Sum_probs=84.6
Q ss_pred cccccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEE
Q psy3426 235 FCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVI 314 (360)
Q Consensus 235 ~~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 314 (360)
..+.++++++.+.++ .+.+.++||||++.||..||||||+|+|+..+. .....+...++++||+
T Consensus 8 ~~~~i~~~~l~~~~~---~~~~~~liDvR~~~e~~~ghIpgainip~~~l~-------------~~~~~l~~~~~~~ivv 71 (109)
T cd01533 8 HTPSVSADELAALQA---RGAPLVVLDGRRFDEYRKMTIPGSVSCPGAELV-------------LRVGELAPDPRTPIVV 71 (109)
T ss_pred cCCcCCHHHHHHHHh---cCCCcEEEeCCCHHHHhcCcCCCceeCCHHHHH-------------HHHHhcCCCCCCeEEE
Confidence 347899999999882 233578999999999999999999999998663 1123333345789999
Q ss_pred EcCCCchhHHHHHHHHHHcCCCc-EEEecccccccccCc
Q psy3426 315 VGGEDSMRQAKFARFIVRLGFPK-VTYVHEHVNSFECYG 352 (360)
Q Consensus 315 ~c~~g~~~s~~~~~~L~~~G~~~-v~~l~GG~~~w~~~g 352 (360)
||.+|. +|..+++.|.+.||++ |++++||+.+|+.+|
T Consensus 72 ~C~~G~-rs~~a~~~L~~~G~~~~v~~l~gG~~~W~~~g 109 (109)
T cd01533 72 NCAGRT-RSIIGAQSLINAGLPNPVAALRNGTQGWTLAG 109 (109)
T ss_pred ECCCCc-hHHHHHHHHHHCCCCcceeEecCCHHHHHhcC
Confidence 999999 9999999999999998 999999999999886
No 18
>cd01518 RHOD_YceA Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
Probab=99.85 E-value=2.8e-21 Score=147.45 Aligned_cols=100 Identities=19% Similarity=0.258 Sum_probs=81.9
Q ss_pred cccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEc
Q psy3426 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVG 316 (360)
Q Consensus 237 ~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c 316 (360)
..|+++++.+++ +++++++||||++.||..||||||+|+|+..+.. ....+ ......+++++||+||
T Consensus 2 ~~is~~~l~~~~----~~~~~~iiDvR~~~e~~~ghi~gA~~ip~~~~~~----~~~~~-----~~~~~~~~~~~ivvyC 68 (101)
T cd01518 2 TYLSPAEWNELL----EDPEVVLLDVRNDYEYDIGHFKGAVNPDVDTFRE----FPFWL-----DENLDLLKGKKVLMYC 68 (101)
T ss_pred CcCCHHHHHHHH----cCCCEEEEEcCChhhhhcCEeccccCCCcccHhH----hHHHH-----HhhhhhcCCCEEEEEC
Confidence 468999999988 5667899999999999999999999999987630 00000 0111225788999999
Q ss_pred CCCchhHHHHHHHHHHcCCCcEEEeccccccccc
Q psy3426 317 GEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 317 ~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~ 350 (360)
.+|. |+..+++.|.+.||++|++|+||+.+|.+
T Consensus 69 ~~G~-rs~~a~~~L~~~G~~~v~~l~GG~~~W~~ 101 (101)
T cd01518 69 TGGI-RCEKASAYLKERGFKNVYQLKGGILKYLE 101 (101)
T ss_pred CCch-hHHHHHHHHHHhCCcceeeechhHHHHhC
Confidence 9999 99999999999999999999999999974
No 19
>KOG1102|consensus
Probab=99.85 E-value=1.1e-21 Score=183.52 Aligned_cols=179 Identities=21% Similarity=0.385 Sum_probs=165.8
Q ss_pred ceeccCCccCCCCcccCC--hhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHhhhh
Q psy3426 2 FCYFGFNLCHQYNELLSS--KTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKYLH 79 (360)
Q Consensus 2 ~I~~Dv~Rt~~~~~~f~~--~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~~~ 79 (360)
+| .|+.||+|.+..|+. ..+++.|.+|+.+|+.++|+ +||||||..++++++... .|++||++++++|..+..
T Consensus 188 ~~-~d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~--~gy~q~m~~~a~~ll~~~--~ee~af~~lv~l~~~~~~ 262 (397)
T KOG1102|consen 188 II-RDLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPE--VGYCQGMSSIAAPLLLYL--PEEEAFPLLVKLMKNYGL 262 (397)
T ss_pred HH-hhccCcCcchhhhhhhcCcccccccccchhhcccCCC--cccccchhhHhhhhhccC--chhhhhhhhhhhhhccch
Confidence 35 899999999999964 67788999999999999999 999999999999988765 589999999999988766
Q ss_pred ccCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhCCCchHHHHH
Q psy3426 80 NFFLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLGDASFPLFIG 159 (360)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~~~~~~~~v~ 159 (360)
..+ .....++......+..+++.+.|.++.|+...++...+|...|++|+|+..+|++.+.++||.++.+|...++.++
T Consensus 263 ~~~-~~~~~~l~~~~~~~~~l~~~~~p~~~~~~~~~~~~~~~~~s~w~~t~f~~k~p~~~~~ri~d~~~~~g~~i~~~~~ 341 (397)
T KOG1102|consen 263 DLL-SPGFSGLQRSFRQLQRLLKELIPKLLDHLLPQGIELSMYASQWFLTLFAAKFPLELVLRIWDALFVEGVSILFRFS 341 (397)
T ss_pred hcc-cccCCchhhhHHHHHHHHHHhChhhhhhccccccccceeccceeeEeeeccccHHHHHHHhHHHHHhchHHHHHHH
Confidence 655 6678889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHhcCCHHHHHHHhcCCC
Q psy3426 160 VSILKQLRETLLSSGFNECILLFSDLP 186 (360)
Q Consensus 160 ~ail~~~~~~ll~~~~~~~l~~l~~~~ 186 (360)
++++.+..+.++..+++..+.++++.+
T Consensus 342 ~~l~~~~~~~~~~~~~e~~~~~l~~~~ 368 (397)
T KOG1102|consen 342 LALLKHKADDLLDLDFESLLSYLRVDL 368 (397)
T ss_pred HHHhhhhhHHHhhccHHHHHHHHhccc
Confidence 999999999999999999999987765
No 20
>cd01527 RHOD_YgaP Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YgaP, and similar uncharacterized putative rhodanese-related sulfurtransferases.
Probab=99.83 E-value=8.7e-21 Score=144.19 Aligned_cols=98 Identities=18% Similarity=0.299 Sum_probs=83.9
Q ss_pred cccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEc
Q psy3426 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVG 316 (360)
Q Consensus 237 ~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c 316 (360)
..++++++.+++ ++. .++||+|+++||..||||||+|+|+..+. . . ....+++++||+||
T Consensus 2 ~~i~~~el~~~~----~~~-~~liDvR~~~e~~~~hi~ga~~ip~~~~~------~-~--------~~~~~~~~~iv~~c 61 (99)
T cd01527 2 TTISPNDACELL----AQG-AVLVDIREPDEYLRERIPGARLVPLSQLE------S-E--------GLPLVGANAIIFHC 61 (99)
T ss_pred CccCHHHHHHHH----HCC-CEEEECCCHHHHHhCcCCCCEECChhHhc------c-c--------ccCCCCCCcEEEEe
Confidence 568999999988 333 78999999999999999999999998764 1 0 11134578999999
Q ss_pred CCCchhHHHHHHHHHHcCCCcEEEecccccccccCcccC
Q psy3426 317 GEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLG 355 (360)
Q Consensus 317 ~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~ 355 (360)
.+|. ++..++..|.+.|+.+++++.||+.+|+.+|+++
T Consensus 62 ~~g~-~s~~~~~~L~~~g~~~v~~l~gG~~~W~~~~~~~ 99 (99)
T cd01527 62 RSGM-RTQQNAERLAAISAGEAYVLEGGLDAWKAAGLPV 99 (99)
T ss_pred CCCc-hHHHHHHHHHHcCCccEEEeeCCHHHHHHCcCCC
Confidence 9999 9999999999999999999999999999999863
No 21
>cd01525 RHOD_Kc Member of the Rhodanese Homology Domain superfamily. Included in this CD are the rhodanese-like domains found C-terminal of the serine/threonine protein kinases catalytic (S_TKc) domain and the Tre-2, BUB2p, Cdc16p (TBC) domain. The putative active site Cys residue is not present in this CD.
Probab=99.83 E-value=1.7e-20 Score=144.28 Aligned_cols=105 Identities=33% Similarity=0.550 Sum_probs=81.9
Q ss_pred cCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCC
Q psy3426 239 LSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGE 318 (360)
Q Consensus 239 is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~ 318 (360)
||++++.+++.. ...++++||||++.||..||||||+|+|+..+. ...+.....+..+.+...++++||+||.+
T Consensus 1 is~~~l~~~l~~--~~~~~~liDvR~~~e~~~ghIpgA~~ip~~~~~----~~~~~~~~~~~~~~~~~~~~~~vv~~c~~ 74 (105)
T cd01525 1 ISVYDVIRLLDN--SPAKLAAVDIRSSPDFRRGHIEGSINIPFSSVF----LKEGELEQLPTVPRLENYKGKIIVIVSHS 74 (105)
T ss_pred CCHHHHHHHHhC--CCCCeEEEECCCHHHHhCCccCCCEeCCHHHhc----ccccccccccchHHHHhhcCCeEEEEeCC
Confidence 688999998821 124689999999999999999999999987653 11112222222334444557899999999
Q ss_pred CchhHHHHHHHHHHcCCCcEEEeccccccccc
Q psy3426 319 DSMRQAKFARFIVRLGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 319 g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~ 350 (360)
|. ++..+++.|...|+++|++|+||+.+|+.
T Consensus 75 g~-~s~~~a~~L~~~G~~~v~~l~GG~~a~~~ 105 (105)
T cd01525 75 HK-HAALFAAFLVKCGVPRVCILDGGINALKP 105 (105)
T ss_pred Cc-cHHHHHHHHHHcCCCCEEEEeCcHHHhcC
Confidence 99 99999999999999999999999999963
No 22
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=99.83 E-value=8.5e-21 Score=146.59 Aligned_cols=104 Identities=10% Similarity=0.158 Sum_probs=89.1
Q ss_pred cccccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEE
Q psy3426 235 FCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVI 314 (360)
Q Consensus 235 ~~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 314 (360)
..+.++++++.+.+ ++.+.++||+|++.||..||||||+|+|...+. ..... .++++++++
T Consensus 3 ~~~~is~~el~~~l----~~~~~~ivDvR~~~e~~~ghi~gA~~ip~~~l~-------------~~~~~--~~~~~~ivv 63 (108)
T PRK00162 3 QFECINVEQAHQKL----QEGGAVLVDIRDPQSFAMGHAPGAFHLTNDSLG-------------AFMRQ--ADFDTPVMV 63 (108)
T ss_pred CccccCHHHHHHHH----HcCCCEEEEcCCHHHHhcCCCCCCeECCHHHHH-------------HHHHh--cCCCCCEEE
Confidence 45789999999988 455688999999999999999999999987553 11112 245779999
Q ss_pred EcCCCchhHHHHHHHHHHcCCCcEEEecccccccccCcccCCCC
Q psy3426 315 VGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLGPGI 358 (360)
Q Consensus 315 ~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~~~~ 358 (360)
||.+|. ++..++..|++.||++|++++||+.+|+++|++.++.
T Consensus 64 ~c~~g~-~s~~a~~~L~~~G~~~v~~l~GG~~~w~~~~~~~~~~ 106 (108)
T PRK00162 64 MCYHGN-SSQGAAQYLLQQGFDVVYSIDGGFEAWRRTFPAEVAS 106 (108)
T ss_pred EeCCCC-CHHHHHHHHHHCCchheEEecCCHHHHHhcCCCccCC
Confidence 999999 9999999999999999999999999999999998864
No 23
>PLN02160 thiosulfate sulfurtransferase
Probab=99.83 E-value=1.9e-20 Score=149.98 Aligned_cols=113 Identities=16% Similarity=0.137 Sum_probs=87.8
Q ss_pred ccccccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhcccccc--ccccCCCcccCccCCCCCCCCChhhhhH-H-hcCC
Q psy3426 234 EFCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGS--INIPLARIPDLESTDLGSMESSPEMNIL-F-NNKG 309 (360)
Q Consensus 234 ~~~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA--~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 309 (360)
+.++.++++++..++ ++ +.++||||++.||..|||||| +|+|+.... +.+.+......... . .+++
T Consensus 12 ~~~~~i~~~e~~~~~----~~-~~~lIDVR~~~E~~~ghIpgA~~iniP~~~~~-----~~~~l~~~~~~~~~~~~~~~~ 81 (136)
T PLN02160 12 EEVVSVDVSQAKTLL----QS-GHQYLDVRTQDEFRRGHCEAAKIVNIPYMLNT-----PQGRVKNQEFLEQVSSLLNPA 81 (136)
T ss_pred eeeeEeCHHHHHHHH----hC-CCEEEECCCHHHHhcCCCCCcceecccchhcC-----cccccCCHHHHHHHHhccCCC
Confidence 346789999999988 33 357999999999999999999 899975431 11111110101111 1 2467
Q ss_pred CeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccccCcccCCC
Q psy3426 310 SIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLGPG 357 (360)
Q Consensus 310 ~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~~~ 357 (360)
++||+||.+|. ||..++..|.+.||++|++|.||+.+|.++|++++.
T Consensus 82 ~~IivyC~sG~-RS~~Aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~ 128 (136)
T PLN02160 82 DDILVGCQSGA-RSLKATTELVAAGYKKVRNKGGGYLAWVDHSFPINQ 128 (136)
T ss_pred CcEEEECCCcH-HHHHHHHHHHHcCCCCeeecCCcHHHHhhCCCCccc
Confidence 89999999999 999999999999999999999999999999999874
No 24
>KOG1530|consensus
Probab=99.82 E-value=1.2e-20 Score=142.82 Aligned_cols=115 Identities=20% Similarity=0.239 Sum_probs=92.5
Q ss_pred hcccccccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHH---hcC
Q psy3426 232 LSEFCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILF---NNK 308 (360)
Q Consensus 232 ~~~~~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 308 (360)
+.+....++.++++++. +.++.++||||+++||..||+|+++|||+........+.+. ...+... ...
T Consensus 18 ~~~~~~sv~~~qvk~L~----~~~~~~llDVRepeEfk~gh~~~siNiPy~~~~~~~~l~~~-----eF~kqvg~~kp~~ 88 (136)
T KOG1530|consen 18 KASNPQSVSVEQVKNLL----QHPDVVLLDVREPEEFKQGHIPASINIPYMSRPGAGALKNP-----EFLKQVGSSKPPH 88 (136)
T ss_pred ccCCcEEEEHHHHHHHh----cCCCEEEEeecCHHHhhccCCcceEeccccccccccccCCH-----HHHHHhcccCCCC
Confidence 33566789999999999 66779999999999999999999999999755322222222 2223332 234
Q ss_pred CCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccccCcccCC
Q psy3426 309 GSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLGP 356 (360)
Q Consensus 309 ~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~~ 356 (360)
+++|||+|.+|. |+..|...|...||+||.++.||+.+|.+.|.+..
T Consensus 89 d~eiIf~C~SG~-Rs~~A~~~l~s~Gyknv~ny~Gs~~~W~~k~~~~~ 135 (136)
T KOG1530|consen 89 DKEIIFGCASGV-RSLKATKILVSAGYKNVGNYPGSYLAWVDKGGPKK 135 (136)
T ss_pred CCcEEEEeccCc-chhHHHHHHHHcCcccccccCccHHHHHHccCCCC
Confidence 569999999999 99999999999999999999999999999998754
No 25
>cd01534 4RHOD_Repeat_3 Member of the Rhodanese Homology Domain superfamily, repeat 3. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 3rd repeat which does not contain the putative catalytic Cys residue.
Probab=99.82 E-value=2.2e-20 Score=140.73 Aligned_cols=95 Identities=19% Similarity=0.295 Sum_probs=76.8
Q ss_pred cCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCC
Q psy3426 239 LSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGE 318 (360)
Q Consensus 239 is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~ 318 (360)
|+++++.++++. .++++++||||++.||..||||||+|+|...+. . ....+...++++||+||.+
T Consensus 1 is~~~l~~~~~~--~~~~~~liDvR~~~e~~~ghipga~~ip~~~l~------~-------~~~~~~~~~~~~iv~~c~~ 65 (95)
T cd01534 1 IGAAELARWAAE--GDRTVYRFDVRTPEEYEAGHLPGFRHTPGGQLV------Q-------ETDHFAPVRGARIVLADDD 65 (95)
T ss_pred CCHHHHHHHHHc--CCCCeEEEECCCHHHHHhCCCCCcEeCCHHHHH------H-------HHHHhcccCCCeEEEECCC
Confidence 688999998821 113688999999999999999999999987553 0 0112222346799999999
Q ss_pred CchhHHHHHHHHHHcCCCcEEEeccccccccc
Q psy3426 319 DSMRQAKFARFIVRLGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 319 g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~ 350 (360)
|. ++..++..|...||+ |++++||+.+|.+
T Consensus 66 G~-rs~~aa~~L~~~G~~-v~~l~GG~~~W~~ 95 (95)
T cd01534 66 GV-RADMTASWLAQMGWE-VYVLEGGLAAALA 95 (95)
T ss_pred CC-hHHHHHHHHHHcCCE-EEEecCcHHHhcC
Confidence 99 999999999999999 9999999999974
No 26
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=99.79 E-value=3e-19 Score=135.96 Aligned_cols=100 Identities=15% Similarity=0.244 Sum_probs=77.8
Q ss_pred cCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCC
Q psy3426 239 LSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGE 318 (360)
Q Consensus 239 is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~ 318 (360)
|+++++.++++ +++++++||||++.||+.||||||+|+|...+. ...+.... ......+++++||+||.+
T Consensus 1 is~~el~~~l~---~~~~~~liDvR~~~e~~~ghi~ga~~ip~~~~~------~~~~~~~~-~~~~~~~~~~~ivv~C~~ 70 (100)
T cd01523 1 LDPEDLYARLL---AGQPLFILDVRNESDYERWKIDGENNTPYFDPY------FDFLEIEE-DILDQLPDDQEVTVICAK 70 (100)
T ss_pred CCHHHHHHHHH---cCCCcEEEEeCCHHHHhhcccCCCcccccccch------HHHHHhhH-HHHhhCCCCCeEEEEcCC
Confidence 57899999882 235689999999999999999999999998653 10000000 001112467899999999
Q ss_pred CchhHHHHHHHHHHcCCCcEEEeccccccccc
Q psy3426 319 DSMRQAKFARFIVRLGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 319 g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~ 350 (360)
|. +|..++..|.+.||+ ++.|.||+.+|+.
T Consensus 71 G~-rs~~aa~~L~~~G~~-~~~l~GG~~~W~~ 100 (100)
T cd01523 71 EG-SSQFVAELLAERGYD-VDYLAGGMKAWSE 100 (100)
T ss_pred CC-cHHHHHHHHHHcCce-eEEeCCcHHhhcC
Confidence 99 999999999999998 9999999999963
No 27
>cd01519 RHOD_HSP67B2 Member of the Rhodanese Homology Domain superfamily. This CD includes the heat shock protein 67B2 of Drosophila melanogaster and other similar proteins, many of which are uncharacterized.
Probab=99.79 E-value=6.1e-20 Score=141.37 Aligned_cols=104 Identities=22% Similarity=0.318 Sum_probs=79.1
Q ss_pred CHHHHHHHhhhcCC-CCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCC
Q psy3426 240 SSTDLLDLINTRFK-KPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGE 318 (360)
Q Consensus 240 s~~~l~~~~~~~~~-~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~ 318 (360)
|++++.+++ + +++.++||+|++.||..||||||+|+|...+........+.+ ....+.....++++||+||.+
T Consensus 2 ~~~~~~~~l----~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~ivv~c~~ 75 (106)
T cd01519 2 SFEEVKNLP----NPHPNKVLIDVREPEELKTGKIPGAINIPLSSLPDALALSEEEF--EKKYGFPKPSKDKELIFYCKA 75 (106)
T ss_pred cHHHHHHhc----CCCCCEEEEECCCHHHHhcCcCCCcEEechHHhhhhhCCCHHHH--HHHhcccCCCCCCeEEEECCC
Confidence 678888887 4 567999999999999999999999999887531000000001 011111223457899999999
Q ss_pred CchhHHHHHHHHHHcCCCcEEEeccccccccc
Q psy3426 319 DSMRQAKFARFIVRLGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 319 g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~ 350 (360)
|. +|..+++.|...||++|++++||+.+|.+
T Consensus 76 g~-~s~~~~~~l~~~G~~~v~~~~Gg~~~W~~ 106 (106)
T cd01519 76 GV-RSKAAAELARSLGYENVGNYPGSWLDWAA 106 (106)
T ss_pred cH-HHHHHHHHHHHcCCccceecCCcHHHHcC
Confidence 99 99999999999999999999999999964
No 28
>TIGR03865 PQQ_CXXCW PQQ-dependent catabolism-associated CXXCW motif protein. Members of this protein family have a CXXXCW motif, consistent with a possible role in redox cofactor binding. This protein family shows strong relationships by phylogenetic profiling and conserved gene neighborhoods with a transport system for alcohols metabolized by PQQ-dependent enzymes.
Probab=99.79 E-value=4e-19 Score=146.45 Aligned_cols=114 Identities=15% Similarity=0.125 Sum_probs=84.7
Q ss_pred cccccccCHHHHHHHhhhcCCCCCEEEEEcCCcc----chhhc---------cccccccccCCCcccCccCCCCCCCCCh
Q psy3426 233 SEFCSSLSSTDLLDLINTRFKKPKVLVIDIRDNE----EYVAE---------SIIGSINIPLARIPDLESTDLGSMESSP 299 (360)
Q Consensus 233 ~~~~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~----e~~~g---------hIpgA~~i~~~~~~~~~~~~~~~~~~~~ 299 (360)
......|+++++.+++ ++++.++||||++. ||..| |||||+|+|...... +...... .
T Consensus 32 ~~~~~~vs~~el~~~l----~~~~~~lIDVR~~~~~~~e~~~G~~~~~~~~~HIPGAv~ip~~~~~~---l~~~~~~--~ 102 (162)
T TIGR03865 32 LKGARVLDTEAAQALL----ARGPVALIDVYPRPPKPKNLLEGTVWRDEPRLNIPGSLWLPNTGYGN---LAPAWQA--Y 102 (162)
T ss_pred cCCccccCHHHHHHHH----hCCCcEEEECCCCccccccccccceeccccCCCCCCcEEecccCCCC---CCCchhH--H
Confidence 3446799999999999 56678899999865 45444 999999999643220 0010000 0
Q ss_pred hhhhHH----hcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccccCcccC
Q psy3426 300 EMNILF----NNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLG 355 (360)
Q Consensus 300 ~~~~~~----~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~ 355 (360)
....+. ..++++||+||.+|..+|..+++.|.+.||++|++|+||+.+|+++|+++
T Consensus 103 ~~~~l~~~~~~~~d~~IVvYC~~G~~~S~~aa~~L~~~G~~~V~~l~GG~~aW~~aG~Pv 162 (162)
T TIGR03865 103 FRRGLERATGGDKDRPLVFYCLADCWMSWNAAKRALAYGYSNVYWYPDGTDGWQAAGLPL 162 (162)
T ss_pred HHHHHHHhcCCCCCCEEEEEECCCCHHHHHHHHHHHhcCCcceEEecCCHHHHHHcCCCC
Confidence 112221 24788999999998647899999999999999999999999999999974
No 29
>cd01447 Polysulfide_ST Polysulfide-sulfurtransferase - Rhodanese Homology Domain. This domain is believed to serve as a polysulfide binding and transferase domain in anaerobic gram-negative bacteria, functioning in oxidative phosphorylation with polysulfide-sulfur as a terminal electron acceptor. The active site contains the same conserved cysteine that is the catalytic residue in other Rhodanese Homology Domain proteins.
Probab=99.78 E-value=2.1e-19 Score=137.61 Aligned_cols=102 Identities=22% Similarity=0.245 Sum_probs=79.4
Q ss_pred cCHHHHHHHhhhcCCCCCEEEEEcCCccch-hhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcC
Q psy3426 239 LSSTDLLDLINTRFKKPKVLVIDIRDNEEY-VAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGG 317 (360)
Q Consensus 239 is~~~l~~~~~~~~~~~~~~iiDvR~~~e~-~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~ 317 (360)
|+++++.+++ ++++.++||+|++.+| ..||||||+|+|...+.. ....... .......++++||+||.
T Consensus 1 is~~el~~~~----~~~~~~iiDvR~~~~~~~~ghIpga~~ip~~~~~~--~~~~~~~-----~~~~~~~~~~~ivv~c~ 69 (103)
T cd01447 1 LSPEDARALL----GSPGVLLVDVRDPRELERTGMIPGAFHAPRGMLEF--WADPDSP-----YHKPAFAEDKPFVFYCA 69 (103)
T ss_pred CCHHHHHHHH----hCCCeEEEECCCHHHHHhcCCCCCcEEcccchhhh--hcCcccc-----ccccCCCCCCeEEEEcC
Confidence 5789999888 4567899999999998 579999999999876530 0000000 00011245789999999
Q ss_pred CCchhHHHHHHHHHHcCCCcEEEecccccccccCc
Q psy3426 318 EDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYG 352 (360)
Q Consensus 318 ~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~g 352 (360)
+|. ++..+++.|.+.|+++|++++||+.+|..+|
T Consensus 70 ~g~-~s~~~~~~l~~~G~~~v~~l~Gg~~~w~~~g 103 (103)
T cd01447 70 SGW-RSALAGKTLQDMGLKPVYNIEGGFKDWKEAG 103 (103)
T ss_pred CCC-cHHHHHHHHHHcChHHhEeecCcHHHHhhcC
Confidence 998 9999999999999999999999999998776
No 30
>cd01526 RHOD_ThiF Member of the Rhodanese Homology Domain superfamily. This CD includes several putative molybdopterin synthase sulfurylases including the molybdenum cofactor biosynthetic protein (CnxF) of Aspergillus nidulans and the molybdenum cofactor synthesis protein 3 (MOCS3) of Homo sapiens. These rhodanese-like domains are found C-terminal of the ThiF and MoeZ_MoeB domains.
Probab=99.78 E-value=2.1e-19 Score=141.80 Aligned_cols=110 Identities=19% Similarity=0.212 Sum_probs=85.1
Q ss_pred ccccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEE
Q psy3426 236 CSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIV 315 (360)
Q Consensus 236 ~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~ 315 (360)
...|+++++.++++ .++++++||||++.||..||||||+|+|+..+.+ ....+... ........++++||+|
T Consensus 7 ~~~is~~el~~~~~---~~~~~~ivDvR~~~e~~~~hIpgai~ip~~~~~~----~~~~~~~~-~~~~~~~~~~~~ivv~ 78 (122)
T cd01526 7 EERVSVKDYKNILQ---AGKKHVLLDVRPKVHFEICRLPEAINIPLSELLS----KAAELKSL-QELPLDNDKDSPIYVV 78 (122)
T ss_pred ccccCHHHHHHHHh---CCCCeEEEEcCCHHHhhcccCCCCeEccHHHHhh----hhhhhhhh-hhcccccCCCCcEEEE
Confidence 46889999999882 2367899999999999999999999999887641 00111000 0011122467899999
Q ss_pred cCCCchhHHHHHHHHHHcCC-CcEEEecccccccccCccc
Q psy3426 316 GGEDSMRQAKFARFIVRLGF-PKVTYVHEHVNSFECYGVL 354 (360)
Q Consensus 316 c~~g~~~s~~~~~~L~~~G~-~~v~~l~GG~~~w~~~gl~ 354 (360)
|++|. +|..++..|.+.|| ++|+.++||+.+|.++.-+
T Consensus 79 C~~G~-rs~~aa~~L~~~G~~~~v~~l~GG~~~W~~~~~~ 117 (122)
T cd01526 79 CRRGN-DSQTAVRKLKELGLERFVRDIIGGLKAWADKVDP 117 (122)
T ss_pred CCCCC-cHHHHHHHHHHcCCccceeeecchHHHHHHHhCc
Confidence 99999 99999999999999 7999999999999987654
No 31
>cd01521 RHOD_PspE2 Member of the Rhodanese Homology Domain superfamily. This CD includes the putative rhodanese-like protein, Psp2, of Yersinia pestis biovar Medievalis and other similar uncharacterized proteins.
Probab=99.78 E-value=4.3e-19 Score=137.43 Aligned_cols=103 Identities=20% Similarity=0.284 Sum_probs=83.4
Q ss_pred cccccCHHHHHHHhhhcCCC-CCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEE
Q psy3426 235 FCSSLSSTDLLDLINTRFKK-PKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIV 313 (360)
Q Consensus 235 ~~~~is~~~l~~~~~~~~~~-~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 313 (360)
....++++++.++++ .+ +++++||+|++.+|..||||||+|+|...+. .. .....+++++||
T Consensus 6 ~~~~~s~~el~~~l~---~~~~~~~iiDvR~~~e~~~ghIpgA~~ip~~~l~------~~--------~~~~i~~~~~vv 68 (110)
T cd01521 6 LAFETDCWDVAIALK---NGKPDFVLVDVRSAEAYARGHVPGAINLPHREIC------EN--------ATAKLDKEKLFV 68 (110)
T ss_pred eeeecCHHHHHHHHH---cCCCCEEEEECCCHHHHhcCCCCCCEeCCHHHhh------hH--------hhhcCCCCCeEE
Confidence 346889999999883 22 4689999999999999999999999987653 00 011224578999
Q ss_pred EEcCCCc-hhHHHHHHHHHHcCCCcEEEecccccccccCcccC
Q psy3426 314 IVGGEDS-MRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLG 355 (360)
Q Consensus 314 ~~c~~g~-~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~ 355 (360)
+||++|. .++..+++.|.+.|++ +++|+||+.+|+.+|+++
T Consensus 69 vyc~~g~~~~s~~~a~~l~~~G~~-v~~l~GG~~~W~~~g~~~ 110 (110)
T cd01521 69 VYCDGPGCNGATKAALKLAELGFP-VKEMIGGLDWWKREGYAT 110 (110)
T ss_pred EEECCCCCchHHHHHHHHHHcCCe-EEEecCCHHHHHHCCCCC
Confidence 9999873 2799999999999995 999999999999999874
No 32
>cd01528 RHOD_2 Member of the Rhodanese Homology Domain superfamily, subgroup 2. Subgroup 2 includes uncharacterized putative rhodanese-related domains.
Probab=99.78 E-value=3.3e-19 Score=135.98 Aligned_cols=97 Identities=22% Similarity=0.434 Sum_probs=79.0
Q ss_pred ccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHh-cCCCeEEEEc
Q psy3426 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFN-NKGSIIVIVG 316 (360)
Q Consensus 238 ~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~~c 316 (360)
.|+++++.++++. ...+.++||+|++.||..+|||||+|+|+..+. . ....+.. .+++++|+||
T Consensus 1 ~i~~~~l~~~~~~--~~~~~~iiDvR~~~e~~~~hI~ga~~ip~~~~~-------~------~~~~~~~~~~~~~vv~~c 65 (101)
T cd01528 1 QISVAELAEWLAD--EREEPVLIDVREPEELEIAFLPGFLHLPMSEIP-------E------RSKELDSDNPDKDIVVLC 65 (101)
T ss_pred CCCHHHHHHHHhc--CCCCCEEEECCCHHHHhcCcCCCCEecCHHHHH-------H------HHHHhcccCCCCeEEEEe
Confidence 3789999998831 113689999999999999999999999987653 0 0122221 3578999999
Q ss_pred CCCchhHHHHHHHHHHcCCCcEEEeccccccccc
Q psy3426 317 GEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 317 ~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~ 350 (360)
++|. +|..++..|.+.|+++|++++||+.+|.+
T Consensus 66 ~~g~-rs~~~~~~l~~~G~~~v~~l~GG~~~w~~ 98 (101)
T cd01528 66 HHGG-RSMQVAQWLLRQGFENVYNLQGGIDAWSL 98 (101)
T ss_pred CCCc-hHHHHHHHHHHcCCccEEEecCCHHHHhh
Confidence 9999 99999999999999999999999999975
No 33
>cd01530 Cdc25 Cdc25 phosphatases are members of the Rhodanese Homology Domain superfamily. They activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. Cdc25A phosphatase functions to regulate S phase entry and Cdc25B is required for G2/M phase transition of the cell cycle. The Cdc25 domain binds oxyanions at the catalytic site and has the signature motif (H/YCxxxxxR).
Probab=99.77 E-value=7.1e-19 Score=138.15 Aligned_cols=103 Identities=18% Similarity=0.296 Sum_probs=78.8
Q ss_pred cccCHHHHHHHhhhcC--CCCCEEEEEcCCccchhhccccccccccCC-CcccCccCCCCCCCCChhhhhHHhcCCCeEE
Q psy3426 237 SSLSSTDLLDLINTRF--KKPKVLVIDIRDNEEYVAESIIGSINIPLA-RIPDLESTDLGSMESSPEMNILFNNKGSIIV 313 (360)
Q Consensus 237 ~~is~~~l~~~~~~~~--~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 313 (360)
..|+++++.++++.+. ..+++++||||++.||..||||||+|+|.. .+. . .+. ........+++++||
T Consensus 2 ~~Is~~el~~~l~~~~~~~~~~~~liDvR~~~e~~~ghI~gA~~ip~~~~l~------~-~~~--~~~~~~~~~~~~~vv 72 (121)
T cd01530 2 KRISPETLARLLQGKYDNFFDKYIIIDCRFPYEYNGGHIKGAVNLSTKDELE------E-FFL--DKPGVASKKKRRVLI 72 (121)
T ss_pred CccCHHHHHHHHhcccccCCCCEEEEECCCHHHHhCCcCCCCEeCCcHHHHH------H-HHH--HhhcccccCCCCEEE
Confidence 4689999999983210 024789999999999999999999999986 342 0 000 000011235688999
Q ss_pred EEcC-CCchhHHHHHHHHHHc------------CCCcEEEecccccccc
Q psy3426 314 IVGG-EDSMRQAKFARFIVRL------------GFPKVTYVHEHVNSFE 349 (360)
Q Consensus 314 ~~c~-~g~~~s~~~~~~L~~~------------G~~~v~~l~GG~~~w~ 349 (360)
+||. +|. ||..+++.|.+. ||++|++|+||+.+|.
T Consensus 73 ~yC~~sg~-rs~~aa~~L~~~~~~~~~~~~~~~g~~~v~~L~GG~~~f~ 120 (121)
T cd01530 73 FHCEFSSK-RGPRMARHLRNLDRELNSNRYPLLYYPEIYILEGGYKNFF 120 (121)
T ss_pred EECCCccc-cHHHHHHHHHHHhhhhccccCCCCCCCeEEEEcChhHhhc
Confidence 9997 888 999999999985 9999999999999985
No 34
>cd01520 RHOD_YbbB Member of the Rhodanese Homology Domain superfamily. This CD includes several putative ATP /GTP binding proteins including E. coli YbbB.
Probab=99.77 E-value=8.3e-19 Score=139.55 Aligned_cols=105 Identities=20% Similarity=0.285 Sum_probs=76.7
Q ss_pred cCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccC----CCCCC------------CCC-hhh
Q psy3426 239 LSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLEST----DLGSM------------ESS-PEM 301 (360)
Q Consensus 239 is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~----~~~~~------------~~~-~~~ 301 (360)
||++++.+++ + .+.++||||++.||..||||||+|+|+......... ..... ... ...
T Consensus 1 ~s~~el~~~l----~-~~~~iiDvR~~~e~~~ghIpgAinip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (128)
T cd01520 1 ITAEDLLALR----K-ADGPLIDVRSPKEFFEGHLPGAINLPLLDDEERALVGTLYKQQGREAAIELGLELVSGKLKRIL 75 (128)
T ss_pred CCHHHHHHHH----h-cCCEEEECCCHHHhccCcCCCcEEccCCChhHHHHhhhheeccCHHHHHHHHHHHHhhhHHHHH
Confidence 6899999988 4 567999999999999999999999999753200000 00000 000 001
Q ss_pred hh---HHhcCCCeEEEEcC-CCchhHHHHHHHHHHcCCCcEEEeccccccccc
Q psy3426 302 NI---LFNNKGSIIVIVGG-EDSMRQAKFARFIVRLGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 302 ~~---~~~~~~~~iv~~c~-~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~ 350 (360)
.. ...+++++||+||. +|. +|.++++.|...|| +|++|+||+.+|+.
T Consensus 76 ~~~~~~~i~~~~~vvvyC~~~G~-rs~~a~~~L~~~G~-~v~~L~GG~~aw~~ 126 (128)
T cd01520 76 NEAWEARLERDPKLLIYCARGGM-RSQSLAWLLESLGI-DVPLLEGGYKAYRK 126 (128)
T ss_pred HHHHHhccCCCCeEEEEeCCCCc-cHHHHHHHHHHcCC-ceeEeCCcHHHHHh
Confidence 11 13456789999997 578 99999999999999 59999999999975
No 35
>cd01448 TST_Repeat_1 Thiosulfate sulfurtransferase (TST), N-terminal, inactive domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the 1st repeat, which does not contain the catalytically active Cys residue. The role of the 1st repeat is uncertain, but it is believed to be involved in protein interaction.
Probab=99.77 E-value=1.3e-18 Score=137.51 Aligned_cols=109 Identities=18% Similarity=0.196 Sum_probs=82.7
Q ss_pred cCHHHHHHHhhhcCCCCCEEEEEcCCc-------cchhhccccccccccCCCcccCccCCCCCCCCC-hh---hhhHHhc
Q psy3426 239 LSSTDLLDLINTRFKKPKVLVIDIRDN-------EEYVAESIIGSINIPLARIPDLESTDLGSMESS-PE---MNILFNN 307 (360)
Q Consensus 239 is~~~l~~~~~~~~~~~~~~iiDvR~~-------~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~ 307 (360)
++++++.+++ ++++.++||+|++ .+|..||||||+|+|+..+........+.+... .. .+.....
T Consensus 2 i~~~~l~~~l----~~~~~~ivDvR~~~~~~~~~~~~~~ghI~ga~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (122)
T cd01448 2 VSPDWLAEHL----DDPDVRILDARWYLPDRDGRKEYLEGHIPGAVFFDLDEDLDDKSPGPHMLPSPEEFAELLGSLGIS 77 (122)
T ss_pred cCHHHHHHHh----CCCCeEEEEeecCCCCCchhhHHhhCCCCCCEEcChhhccccCCCCCCCCCCHHHHHHHHHHcCCC
Confidence 6899999998 5567899999999 899999999999999877641100001111111 11 1122334
Q ss_pred CCCeEEEEcCCC-chhHHHHHHHHHHcCCCcEEEecccccccccCc
Q psy3426 308 KGSIIVIVGGED-SMRQAKFARFIVRLGFPKVTYVHEHVNSFECYG 352 (360)
Q Consensus 308 ~~~~iv~~c~~g-~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~g 352 (360)
++++||+||.+| . ++..+++.|...|+++|++|+||+.+|+++|
T Consensus 78 ~~~~vv~~c~~g~~-~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g 122 (122)
T cd01448 78 NDDTVVVYDDGGGF-FAARAWWTLRYFGHENVRVLDGGLQAWKAEG 122 (122)
T ss_pred CCCEEEEECCCCCc-cHHHHHHHHHHcCCCCEEEecCCHHHHHhCc
Confidence 678999999995 7 8999999999999999999999999999876
No 36
>cd01522 RHOD_1 Member of the Rhodanese Homology Domain superfamily, subgroup 1. This CD includes the putative rhodanese-related sulfurtransferases of several uncharacterized proteins.
Probab=99.77 E-value=9.3e-19 Score=136.93 Aligned_cols=103 Identities=17% Similarity=0.287 Sum_probs=80.0
Q ss_pred cCHHHHHHHhhhcCCCCCEEEEEcCCccchh-hccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcC
Q psy3426 239 LSSTDLLDLINTRFKKPKVLVIDIRDNEEYV-AESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGG 317 (360)
Q Consensus 239 is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~-~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~ 317 (360)
||++++.++++ ++++.++||||++.||+ .||||||+|+|...+.... ....+ ........ +++++||+||.
T Consensus 1 is~~el~~~l~---~~~~~~vIDvR~~~e~~~~ghIpgA~~ip~~~~~~~~--~~~~~--~~~l~~~~-~~~~~ivv~C~ 72 (117)
T cd01522 1 LTPAEAWALLQ---ADPQAVLVDVRTEAEWKFVGGVPDAVHVAWQVYPDME--INPNF--LAELEEKV-GKDRPVLLLCR 72 (117)
T ss_pred CCHHHHHHHHH---hCCCeEEEECCCHHHHhcccCCCCceecchhhccccc--cCHHH--HHHHHhhC-CCCCeEEEEcC
Confidence 58899999883 22579999999999999 9999999999998764100 00000 01111111 46789999999
Q ss_pred CCchhHHHHHHHHHHcCCCcEEEeccccccccc
Q psy3426 318 EDSMRQAKFARFIVRLGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 318 ~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~ 350 (360)
+|. +|..++..|.+.||++++.+.||+.+|++
T Consensus 73 ~G~-rs~~aa~~L~~~G~~~v~~l~gG~~~~~~ 104 (117)
T cd01522 73 SGN-RSIAAAEAAAQAGFTNVYNVLEGFEGDLD 104 (117)
T ss_pred CCc-cHHHHHHHHHHCCCCeEEECcCceecCCC
Confidence 999 99999999999999999999999999966
No 37
>cd01444 GlpE_ST GlpE sulfurtransferase (ST) and homologs are members of the Rhodanese Homology Domain superfamily. Unlike other rhodanese sulfurtransferases, GlpE is a single domain protein but indications are that it functions as a dimer. The active site contains a catalytically active cysteine.
Probab=99.77 E-value=7e-19 Score=132.88 Aligned_cols=94 Identities=18% Similarity=0.315 Sum_probs=78.8
Q ss_pred ccCHHHHHHHhhhcCCCCCEEEEEcCCccchhh--ccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEE
Q psy3426 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVA--ESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIV 315 (360)
Q Consensus 238 ~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~--ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~ 315 (360)
.|+++++.++++ .+.++++||+|++.+|.. ||||||+|+|+..+. ..... .+++++||+|
T Consensus 1 ~i~~~~~~~~~~---~~~~~~ivDvR~~~e~~~~~~hi~ga~~ip~~~~~-------------~~~~~--~~~~~~ivv~ 62 (96)
T cd01444 1 RISVDELAELLA---AGEAPVLLDVRDPASYAALPDHIPGAIHLDEDSLD-------------DWLGD--LDRDRPVVVY 62 (96)
T ss_pred CcCHHHHHHHHh---cCCCcEEEECCCHHHHhcccCCCCCCeeCCHHHHH-------------HHHhh--cCCCCCEEEE
Confidence 368899998882 225689999999999999 999999999998664 00111 2467899999
Q ss_pred cCCCchhHHHHHHHHHHcCCCcEEEeccccccccc
Q psy3426 316 GGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 316 c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~ 350 (360)
|.+|. +|..+++.|.+.||++|++++||+.+|++
T Consensus 63 c~~g~-~s~~a~~~l~~~G~~~v~~l~gG~~~w~~ 96 (96)
T cd01444 63 CYHGN-SSAQLAQALREAGFTDVRSLAGGFEAWRR 96 (96)
T ss_pred eCCCC-hHHHHHHHHHHcCCceEEEcCCCHHHhcC
Confidence 99999 99999999999999999999999999963
No 38
>cd01524 RHOD_Pyr_redox Member of the Rhodanese Homology Domain superfamily. Included in this CD are the Lactococcus lactis NADH oxidase, Bacillus cereus NADH dehydrogenase, and Bacteroides thetaiotaomicron pyridine nucleotide-disulphide oxidoreductase, and similar rhodanese-like domains found C-terminal of the pyridine nucleotide-disulphide oxidoreductase (Pyr-redox) domain and the Pyr-redox dimerization domain.
Probab=99.76 E-value=7.8e-19 Score=130.88 Aligned_cols=89 Identities=26% Similarity=0.362 Sum_probs=74.9
Q ss_pred cCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCC
Q psy3426 239 LSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGE 318 (360)
Q Consensus 239 is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~ 318 (360)
++|+++.+++ .++.++||+|++++|..||||||+|+|...+. ...+. ..++++||+||++
T Consensus 1 ~~~~e~~~~~-----~~~~~iiD~R~~~~~~~~hipgA~~ip~~~~~-------------~~~~~--~~~~~~vvl~c~~ 60 (90)
T cd01524 1 VQWHELDNYR-----ADGVTLIDVRTPQEFEKGHIKGAINIPLDELR-------------DRLNE--LPKDKEIIVYCAV 60 (90)
T ss_pred CCHHHHHHHh-----cCCCEEEECCCHHHHhcCCCCCCEeCCHHHHH-------------HHHHh--cCCCCcEEEEcCC
Confidence 4788888887 35678999999999999999999999987653 01111 2456799999999
Q ss_pred CchhHHHHHHHHHHcCCCcEEEecccccccc
Q psy3426 319 DSMRQAKFARFIVRLGFPKVTYVHEHVNSFE 349 (360)
Q Consensus 319 g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~ 349 (360)
|. ++..++..|++.|+ ++++|+||+.+|+
T Consensus 61 g~-~a~~~a~~L~~~G~-~v~~l~GG~~~w~ 89 (90)
T cd01524 61 GL-RGYIAARILTQNGF-KVKNLDGGYKTYS 89 (90)
T ss_pred Ch-hHHHHHHHHHHCCC-CEEEecCCHHHhc
Confidence 98 99999999999999 8999999999996
No 39
>smart00450 RHOD Rhodanese Homology Domain. An alpha beta fold found duplicated in the Rhodanese protein. The the Cysteine containing enzymatically active version of the domain is also found in the CDC25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and stress proteins such as Senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions with a loss of the cysteine are also seen in Dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases. These are likely to play a role in protein interactions.
Probab=99.75 E-value=1.1e-18 Score=132.47 Aligned_cols=96 Identities=28% Similarity=0.430 Sum_probs=75.1
Q ss_pred CCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCC---ChhhhhHHhcCCCeEEEEcCCCchhHHHHHHHH
Q psy3426 254 KPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMES---SPEMNILFNNKGSIIVIVGGEDSMRQAKFARFI 330 (360)
Q Consensus 254 ~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~iv~~c~~g~~~s~~~~~~L 330 (360)
++++++||||++.||..||||||+|+|...+.. ....... ..........++++||+||.+|. ++..+++.|
T Consensus 2 ~~~~~ivDvR~~~e~~~~hi~ga~~i~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~-~a~~~~~~l 76 (100)
T smart00450 2 DEKVVLLDVRSPEEYEGGHIPGAVNIPLSELLD----RRGELDILEFEELLKRLGLDKDKPVVVYCRSGN-RSAKAAWLL 76 (100)
T ss_pred CCCEEEEECCCHHHhccCCCCCceeCCHHHhcc----CCCCcCHHHHHHHHHHcCCCCCCeEEEEeCCCc-HHHHHHHHH
Confidence 457899999999999999999999999986641 1111100 01112233346789999999988 999999999
Q ss_pred HHcCCCcEEEecccccccccCccc
Q psy3426 331 VRLGFPKVTYVHEHVNSFECYGVL 354 (360)
Q Consensus 331 ~~~G~~~v~~l~GG~~~w~~~gl~ 354 (360)
.+.|+++|++|+||+.+|+++|.+
T Consensus 77 ~~~G~~~v~~l~GG~~~w~~~~~~ 100 (100)
T smart00450 77 RELGFKNVYLLDGGYKEWSAAGPP 100 (100)
T ss_pred HHcCCCceEEecCCHHHHHhcCCC
Confidence 999999999999999999998864
No 40
>cd01449 TST_Repeat_2 Thiosulfate sulfurtransferase (TST), C-terminal, catalytic domain. TST contains 2 copies of the Rhodanese Homology Domain; this is the second repeat. Only the second repeat contains the catalytically active Cys residue.
Probab=99.75 E-value=1e-18 Score=137.27 Aligned_cols=103 Identities=18% Similarity=0.323 Sum_probs=79.5
Q ss_pred cCHHHHHHHhhhcCCCCCEEEEEcCCccchhh-----------ccccccccccCCCcccCccCCCCCCCCChh----hhh
Q psy3426 239 LSSTDLLDLINTRFKKPKVLVIDIRDNEEYVA-----------ESIIGSINIPLARIPDLESTDLGSMESSPE----MNI 303 (360)
Q Consensus 239 is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~-----------ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~----~~~ 303 (360)
++++++.+.+ +++++++||||++.||.. ||||||+|+|+..+.. ....+..... ...
T Consensus 1 ~s~~~l~~~l----~~~~~~iiDvR~~~e~~~~~~~~~~~~~~ghIpgA~~~p~~~~~~----~~~~~~~~~~~~~~~~~ 72 (118)
T cd01449 1 VTAEEVLANL----DSGDVQLVDARSPERFRGEVPEPRPGLRSGHIPGAVNIPWTSLLD----EDGTFKSPEELRALFAA 72 (118)
T ss_pred CCHHHHHHhc----CCCCcEEEeCCCHHHcCCcCCCCCCCCcCCcCCCCcccChHHhcC----CCCCcCCHHHHHHHHHH
Confidence 5788998888 455689999999999987 9999999999986541 1111111111 111
Q ss_pred HHhcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccccccc
Q psy3426 304 LFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 304 ~~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~ 350 (360)
....++++||+||.+|. +|.++++.|...|++++++|+||+.+|.+
T Consensus 73 ~~~~~~~~iv~yc~~g~-~s~~~~~~l~~~G~~~v~~l~GG~~~W~~ 118 (118)
T cd01449 73 LGITPDKPVIVYCGSGV-TACVLLLALELLGYKNVRLYDGSWSEWGS 118 (118)
T ss_pred cCCCCCCCEEEECCcHH-HHHHHHHHHHHcCCCCeeeeCChHHHhcC
Confidence 22336789999999998 99999999999999999999999999974
No 41
>cd01529 4RHOD_Repeats Member of the Rhodanese Homology Domain superfamily. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. Only the second and most of the fourth repeats contain the putative catalytic Cys residue. This CD aligns the 1st , 2nd, 3rd, and 4th repeats.
Probab=99.75 E-value=1.3e-18 Score=131.28 Aligned_cols=86 Identities=19% Similarity=0.251 Sum_probs=69.5
Q ss_pred CCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHH-hcCCCeEEEEcCCCchhHHHHHHHHHH
Q psy3426 254 KPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILF-NNKGSIIVIVGGEDSMRQAKFARFIVR 332 (360)
Q Consensus 254 ~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~iv~~c~~g~~~s~~~~~~L~~ 332 (360)
++++++||||++.+|..||||||+|+|...+. ..... ...+. ..++++||+||++|. ++..+++.|.+
T Consensus 10 ~~~~~iiDvR~~~~~~~~hIpgA~~ip~~~~~----~~~~~------~~~~~~~~~~~~ivv~c~~g~-~s~~~~~~l~~ 78 (96)
T cd01529 10 EPGTALLDVRAEDEYAAGHLPGKRSIPGAALV----LRSQE------LQALEAPGRATRYVLTCDGSL-LARFAAQELLA 78 (96)
T ss_pred CCCeEEEeCCCHHHHcCCCCCCcEeCCHHHhc----CCHHH------HHHhhcCCCCCCEEEEeCChH-HHHHHHHHHHH
Confidence 46789999999999999999999999987553 00001 11111 246789999999999 99999999999
Q ss_pred cCCCcEEEeccccccccc
Q psy3426 333 LGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 333 ~G~~~v~~l~GG~~~w~~ 350 (360)
.|+++|++|+||+.+|++
T Consensus 79 ~G~~~v~~l~GG~~~W~~ 96 (96)
T cd01529 79 LGGKPVALLDGGTSAWVA 96 (96)
T ss_pred cCCCCEEEeCCCHHHhcC
Confidence 999999999999999974
No 42
>cd01535 4RHOD_Repeat_4 Member of the Rhodanese Homology Domain superfamily, repeat 4. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 4th repeat which, in general, contains the putative catalytic Cys residue.
Probab=99.74 E-value=2.4e-18 Score=139.28 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=75.5
Q ss_pred CCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHh-cCCCeEEEEcCCCchhHHHHHHHHHH
Q psy3426 254 KPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFN-NKGSIIVIVGGEDSMRQAKFARFIVR 332 (360)
Q Consensus 254 ~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~iv~~c~~g~~~s~~~~~~L~~ 332 (360)
+.+++|||||++.+|..||||||+|+|...+. ..+.. .++.+||+||.+|. +|..+++.|..
T Consensus 9 ~~~~~ivDvR~~~e~~~gHIpgAi~~~~~~l~----------------~~l~~l~~~~~vVv~c~~g~-~a~~aa~~L~~ 71 (145)
T cd01535 9 GGQTAVVDVTASANYVKRHIPGAWWVLRAQLA----------------QALEKLPAAERYVLTCGSSL-LARFAAADLAA 71 (145)
T ss_pred CCCeEEEECCCHHHHHcCCCCCceeCCHHHHH----------------HHHHhcCCCCCEEEEeCCCh-HHHHHHHHHHH
Confidence 44689999999999999999999999887653 12211 24678999999998 99999999999
Q ss_pred cCCCcEEEecccccccccCcccCCCC
Q psy3426 333 LGFPKVTYVHEHVNSFECYGVLGPGI 358 (360)
Q Consensus 333 ~G~~~v~~l~GG~~~w~~~gl~~~~~ 358 (360)
.|+++|++|+||+.+|+++|+++++.
T Consensus 72 ~G~~~v~~L~GG~~aW~~~g~pl~~~ 97 (145)
T cd01535 72 LTVKPVFVLEGGTAAWIAAGLPVESG 97 (145)
T ss_pred cCCcCeEEecCcHHHHHHCCCCcccC
Confidence 99999999999999999999998753
No 43
>PF00581 Rhodanese: Rhodanese-like domain This Prosite entry represents a subset of this family.; InterPro: IPR001763 Rhodanese, a sulphurtransferase involved in cyanide detoxification (see IPR001307 from INTERPRO) shares evolutionary relationship with a large family of proteins [], including Cdc25 phosphatase catalytic domain. non-catalytic domains of eukaryotic dual-specificity MAPK-phosphatases. non-catalytic domains of yeast PTP-type MAPK-phosphatases. non-catalytic domains of yeast Ubp4, Ubp5, Ubp7. non-catalytic domains of mammalian Ubp-Y. Drosophila heat shock protein HSP-67BB. several bacterial cold-shock and phage shock proteins. plant senescence associated proteins. catalytic and non-catalytic domains of rhodanese (see IPR001307 from INTERPRO). Rhodanese has an internal duplication. This domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases [].; PDB: 2J6P_D 2FSX_A 1UAR_A 1OKG_A 1GMX_A 1GN0_A 3NTD_B 3NTA_B 3NT6_A 1C25_A ....
Probab=99.74 E-value=1.3e-18 Score=135.29 Aligned_cols=103 Identities=26% Similarity=0.391 Sum_probs=76.0
Q ss_pred CHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCC---hhhhhH--HhcCCCeEEE
Q psy3426 240 SSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESS---PEMNIL--FNNKGSIIVI 314 (360)
Q Consensus 240 s~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~iv~ 314 (360)
||+++.+.+ +++++++||||++.+|..||||||+|+|..... ......... ...... ...++++||+
T Consensus 1 s~~el~~~l----~~~~~~liD~R~~~~~~~~hI~ga~~i~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 72 (113)
T PF00581_consen 1 SPEELKEML----ENESVLLIDVRSPEEYERGHIPGAVNIPFPSLD----PDEPSLSEDKLDEFLKELGKKIDKDKDIVF 72 (113)
T ss_dssp -HHHHHHHH----TTTTEEEEEESSHHHHHHSBETTEEEEEGGGGS----SSSSBCHHHHHHHHHHHHTHGSTTTSEEEE
T ss_pred CHHHHHhhh----hCCCeEEEEeCCHHHHHcCCCCCCccccccccc----ccccccccccccccccccccccccccccee
Confidence 688999998 788999999999999999999999999996541 000000000 001111 1246779999
Q ss_pred EcCCCchhHHHHHHH-----HHHcCCCcEEEecccccccccC
Q psy3426 315 VGGEDSMRQAKFARF-----IVRLGFPKVTYVHEHVNSFECY 351 (360)
Q Consensus 315 ~c~~g~~~s~~~~~~-----L~~~G~~~v~~l~GG~~~w~~~ 351 (360)
||.+|. ++..++.. |.+.|+++|++|+||+.+|.++
T Consensus 73 yc~~~~-~~~~~~~~~~~~~l~~~g~~~v~~l~GG~~~w~~~ 113 (113)
T PF00581_consen 73 YCSSGW-RSGSAAAARVAWILKKLGFKNVYILDGGFEAWKAE 113 (113)
T ss_dssp EESSSC-HHHHHHHHHHHHHHHHTTTSSEEEETTHHHHHHHH
T ss_pred eeeccc-ccchhHHHHHHHHHHHcCCCCEEEecChHHHHhcC
Confidence 998888 66665555 8888999999999999999863
No 44
>cd01532 4RHOD_Repeat_1 Member of the Rhodanese Homology Domain superfamily, repeat 1. This CD includes putative rhodanese-related sulfurtransferases which contain 4 copies of the Rhodanese Homology Domain. This CD aligns the 1st repeat which does not contain the putative catalytic Cys residue.
Probab=99.74 E-value=2.8e-18 Score=128.30 Aligned_cols=84 Identities=19% Similarity=0.437 Sum_probs=68.5
Q ss_pred CCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCCCchh--HHHHHHHH
Q psy3426 253 KKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSMR--QAKFARFI 330 (360)
Q Consensus 253 ~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~~--s~~~~~~L 330 (360)
+++++++||+|++.||..||||||+|+|...+. ... .... ..++++||+||.+|. + |..+++.|
T Consensus 7 ~~~~~~liDvR~~~e~~~~hi~ga~~ip~~~~~------~~~------~~~~-~~~~~~ivl~c~~G~-~~~s~~aa~~L 72 (92)
T cd01532 7 AREEIALIDVREEDPFAQSHPLWAANLPLSRLE------LDA------WVRI-PRRDTPIVVYGEGGG-EDLAPRAARRL 72 (92)
T ss_pred cCCCeEEEECCCHHHHhhCCcccCeeCCHHHHH------hhh------HhhC-CCCCCeEEEEeCCCC-chHHHHHHHHH
Confidence 456799999999999999999999999987653 000 0111 124779999999987 5 68999999
Q ss_pred HHcCCCcEEEeccccccccc
Q psy3426 331 VRLGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 331 ~~~G~~~v~~l~GG~~~w~~ 350 (360)
.+.|+++|++++||+.+|++
T Consensus 73 ~~~G~~~v~~l~GG~~~W~~ 92 (92)
T cd01532 73 SELGYTDVALLEGGLQGWRA 92 (92)
T ss_pred HHcCccCEEEccCCHHHHcC
Confidence 99999999999999999974
No 45
>cd01445 TST_Repeats Thiosulfate sulfurtransferases (TST) contain 2 copies of the Rhodanese Homology Domain. Only the second repeat contains the catalytically active Cys residue. The role of the 1st repeat is uncertain, but believed to be involved in protein interaction. This CD aligns the 1st and 2nd repeats.
Probab=99.73 E-value=6.6e-18 Score=135.59 Aligned_cols=110 Identities=14% Similarity=0.105 Sum_probs=79.4
Q ss_pred cCHHHHHHHhhhcCCCCCEEEEEcCCc--------cchhh------------ccccccccccCCCcccCccCCCCCC---
Q psy3426 239 LSSTDLLDLINTRFKKPKVLVIDIRDN--------EEYVA------------ESIIGSINIPLARIPDLESTDLGSM--- 295 (360)
Q Consensus 239 is~~~l~~~~~~~~~~~~~~iiDvR~~--------~e~~~------------ghIpgA~~i~~~~~~~~~~~~~~~~--- 295 (360)
||++++.+.++.+..++++++||+|+. .+|.+ ||||||+|+|+..+.+........+
T Consensus 1 vs~e~l~~~l~~~~~~~~~~iiD~r~~~~~~~~~~~~y~~~~~~~~~~~~~~GHIPgAv~~~~~~~~~~~~~~~~~~p~~ 80 (138)
T cd01445 1 KSTEQLAENLEAGKVGKGFQLLDARAQSPGTREARGEYLETQPEPDAVGLDSGHIPGASFFDFEECLDEAGFEESMEPSE 80 (138)
T ss_pred CCHHHHHHHhhccccCCCeEEEEccCCCccCcchhhhhcccCCCCCcCCCcCCcCCCCEeeCHHHhhCcCCCCCCCCCCH
Confidence 588999998832222568999999987 88988 9999999999875531111000111
Q ss_pred -CCChhhhhHHhcCCCeEEEEcCC---CchhHHHHHHHHHHcCCCcEEEecccccccc
Q psy3426 296 -ESSPEMNILFNNKGSIIVIVGGE---DSMRQAKFARFIVRLGFPKVTYVHEHVNSFE 349 (360)
Q Consensus 296 -~~~~~~~~~~~~~~~~iv~~c~~---g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~ 349 (360)
........+...++++||+||++ |. .|.++++.|+..|+++|++|+||+.+|+
T Consensus 81 ~~~~~~~~~~GI~~~~~vVvY~~~~~~g~-~A~r~~~~l~~~G~~~v~ildGG~~~W~ 137 (138)
T cd01445 81 AEFAAMFEAKGIDLDKHLIATDGDDLGGF-TACHIALAARLCGHPDVAILDGGFFEWF 137 (138)
T ss_pred HHHHHHHHHcCCCCCCeEEEECCCCCcch-HHHHHHHHHHHcCCCCeEEeCCCHHHhh
Confidence 00122223333467899999986 56 8999999999999999999999999996
No 46
>cd01531 Acr2p Eukaryotic arsenate resistance proteins are members of the Rhodanese Homology Domain superfamily. Included in this CD is the Saccharomyces cerevisiae arsenate reductase protein, Acr2p, and other yeast and plant homologs.
Probab=99.72 E-value=1e-17 Score=130.44 Aligned_cols=102 Identities=25% Similarity=0.364 Sum_probs=76.6
Q ss_pred ccccCHHHHHHHhhhcCCC-CCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEE
Q psy3426 236 CSSLSSTDLLDLINTRFKK-PKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVI 314 (360)
Q Consensus 236 ~~~is~~~l~~~~~~~~~~-~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 314 (360)
++.|+++++.+++. .+ ++.++||||++ ||..||||||+|+|...+. .... ...+.....++++||+
T Consensus 1 ~~~is~~~l~~~~~---~~~~~~~iiDvR~~-e~~~~hi~gA~~ip~~~l~-------~~~~--~~~~~~~~~~~~~iv~ 67 (113)
T cd01531 1 VSYISPAQLKGWIR---NGRPPFQVVDVRDE-DYAGGHIKGSWHYPSTRFK-------AQLN--QLVQLLSGSKKDTVVF 67 (113)
T ss_pred CCcCCHHHHHHHHH---cCCCCEEEEEcCCc-ccCCCcCCCCEecCHHHHh-------hCHH--HHHHHHhcCCCCeEEE
Confidence 35789999999882 22 46889999999 9999999999999998663 1110 1111121245679999
Q ss_pred EcC-CCchhHHHHHHHHHH--------cCCCcEEEecccccccccC
Q psy3426 315 VGG-EDSMRQAKFARFIVR--------LGFPKVTYVHEHVNSFECY 351 (360)
Q Consensus 315 ~c~-~g~~~s~~~~~~L~~--------~G~~~v~~l~GG~~~w~~~ 351 (360)
||. ++. |+..++..|.+ .|+++|++|+||+.+|+++
T Consensus 68 yC~~~~~-r~~~aa~~l~~~~~~~~~~~G~~~v~~l~gG~~~w~~~ 112 (113)
T cd01531 68 HCALSQV-RGPSAARKFLRYLDEEDLETSKFEVYVLHGGFNAWESS 112 (113)
T ss_pred EeecCCc-chHHHHHHHHHHHHHhccccCCCeEEEEcChHHHHHhh
Confidence 998 556 88888877754 4999999999999999864
No 47
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.72 E-value=6.9e-18 Score=158.45 Aligned_cols=105 Identities=17% Similarity=0.263 Sum_probs=88.9
Q ss_pred ccccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEE
Q psy3426 236 CSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIV 315 (360)
Q Consensus 236 ~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~ 315 (360)
++.|+++++.+++ + .+.++||+|++.||..||||||+|+|+..+. ........+++++||+|
T Consensus 2 v~~is~~el~~~l----~-~~~~ivDvR~~~e~~~ghIpgAi~ip~~~l~-------------~~~~~~~~~~~~~Ivvy 63 (376)
T PRK08762 2 IREISPAEARARA----A-QGAVLIDVREAHERASGQAEGALRIPRGFLE-------------LRIETHLPDRDREIVLI 63 (376)
T ss_pred CceeCHHHHHHHH----h-CCCEEEECCCHHHHhCCcCCCCEECCHHHHH-------------HHHhhhcCCCCCeEEEE
Confidence 4678999999988 3 3488999999999999999999999987653 00112222468899999
Q ss_pred cCCCchhHHHHHHHHHHcCCCcEEEecccccccccCcccCCCCC
Q psy3426 316 GGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLGPGIP 359 (360)
Q Consensus 316 c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~~~~~ 359 (360)
|++|. +|..+++.|.+.||++|++|+||+.+|+++|+++++.|
T Consensus 64 C~~G~-rs~~aa~~L~~~G~~~v~~l~GG~~~W~~~g~p~~~~~ 106 (376)
T PRK08762 64 CASGT-RSAHAAATLRELGYTRVASVAGGFSAWKDAGLPLERPR 106 (376)
T ss_pred cCCCc-HHHHHHHHHHHcCCCceEeecCcHHHHHhcCCcccccc
Confidence 99999 99999999999999999999999999999999988765
No 48
>cd00158 RHOD Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.
Probab=99.71 E-value=2e-17 Score=122.81 Aligned_cols=83 Identities=27% Similarity=0.420 Sum_probs=71.1
Q ss_pred CCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCCCchhHHHHHHHHHH
Q psy3426 253 KKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVR 332 (360)
Q Consensus 253 ~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~~s~~~~~~L~~ 332 (360)
..++..+||+|++.+|..||||||+|+|...+. .. .......++++||+||+.|. ++..+++.|.+
T Consensus 7 ~~~~~~iiD~R~~~~~~~~~i~ga~~~~~~~~~------~~-------~~~~~~~~~~~vv~~c~~~~-~a~~~~~~l~~ 72 (89)
T cd00158 7 DDEDAVLLDVREPEEYAAGHIPGAINIPLSELE------ER-------AALLELDKDKPIVVYCRSGN-RSARAAKLLRK 72 (89)
T ss_pred cCCCeEEEECCCHHHHhccccCCCEecchHHHh------hH-------HHhhccCCCCeEEEEeCCCc-hHHHHHHHHHH
Confidence 467899999999999999999999999998664 00 01233456789999999998 99999999999
Q ss_pred cCCCcEEEecccccccc
Q psy3426 333 LGFPKVTYVHEHVNSFE 349 (360)
Q Consensus 333 ~G~~~v~~l~GG~~~w~ 349 (360)
.|+.++++|+||+.+|+
T Consensus 73 ~G~~~v~~l~gG~~~w~ 89 (89)
T cd00158 73 AGGTNVYNLEGGMLAWK 89 (89)
T ss_pred hCcccEEEecCChhhcC
Confidence 99999999999999995
No 49
>PRK01415 hypothetical protein; Validated
Probab=99.70 E-value=1.8e-17 Score=143.97 Aligned_cols=104 Identities=18% Similarity=0.151 Sum_probs=85.9
Q ss_pred cccccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEE
Q psy3426 235 FCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVI 314 (360)
Q Consensus 235 ~~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 314 (360)
....|+|+++.+++ +++++++||||++.||+.||||||+|+|...+.. . .... .......++++|++
T Consensus 110 ~g~~i~p~e~~~ll----~~~~~vvIDVRn~~E~~~Ghi~gAinip~~~f~e---~-~~~~-----~~~~~~~k~k~Iv~ 176 (247)
T PRK01415 110 KGEYIEPKDWDEFI----TKQDVIVIDTRNDYEVEVGTFKSAINPNTKTFKQ---F-PAWV-----QQNQELLKGKKIAM 176 (247)
T ss_pred CccccCHHHHHHHH----hCCCcEEEECCCHHHHhcCCcCCCCCCChHHHhh---h-HHHH-----hhhhhhcCCCeEEE
Confidence 45789999999999 5678999999999999999999999999876530 0 0000 01122357889999
Q ss_pred EcCCCchhHHHHHHHHHHcCCCcEEEecccccccccCc
Q psy3426 315 VGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYG 352 (360)
Q Consensus 315 ~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~g 352 (360)
||.+|. |+..++..|.+.||++|+.|.||+.+|.+..
T Consensus 177 yCtgGi-Rs~kAa~~L~~~Gf~~Vy~L~GGi~~w~~~~ 213 (247)
T PRK01415 177 VCTGGI-RCEKSTSLLKSIGYDEVYHLKGGILQYLEDT 213 (247)
T ss_pred ECCCCh-HHHHHHHHHHHcCCCcEEEechHHHHHHHhc
Confidence 999999 9999999999999999999999999998754
No 50
>cd01443 Cdc25_Acr2p Cdc25 enzymes are members of the Rhodanese Homology Domain (RHOD) superfamily. Also included in this CD are eukaryotic arsenate resistance proteins such as Saccharomyces cerevisiae Acr2p and similar proteins. Cdc25 phosphatases activate the cell division kinases throughout the cell cycle progression. Cdc25 phosphatases dephosphorylate phosphotyrosine and phosphothreonine residues, in order to activate their Cdk/cyclin substrates. The Cdc25 and Acr2p RHOD domains have the signature motif (H/YCxxxxxR).
Probab=99.70 E-value=4.6e-17 Score=126.67 Aligned_cols=102 Identities=20% Similarity=0.347 Sum_probs=73.1
Q ss_pred cccCHHHHHHHhhhcC--CCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEE
Q psy3426 237 SSLSSTDLLDLINTRF--KKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVI 314 (360)
Q Consensus 237 ~~is~~~l~~~~~~~~--~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 314 (360)
+.|+++++.++++.+. ..++.++||||++ ||..||||||+|+|...+. ..+. .....+...+.++||+
T Consensus 2 ~~is~~el~~~l~~~~~~~~~~~~iiDvR~~-ef~~ghipgAi~ip~~~~~-------~~~~--~~~~~~~~~~~~~iv~ 71 (113)
T cd01443 2 KYISPEELVALLENSDSNAGKDFVVVDLRRD-DYEGGHIKGSINLPAQSCY-------QTLP--QVYALFSLAGVKLAIF 71 (113)
T ss_pred cccCHHHHHHHHhCCccccCCcEEEEECCch-hcCCCcccCceecchhHHH-------HHHH--HHHHHhhhcCCCEEEE
Confidence 5689999999983100 0036899999999 9999999999999998653 1110 0111122245678999
Q ss_pred EcCC-CchhHHHHHHHHHH----cCC--CcEEEecccccccc
Q psy3426 315 VGGE-DSMRQAKFARFIVR----LGF--PKVTYVHEHVNSFE 349 (360)
Q Consensus 315 ~c~~-g~~~s~~~~~~L~~----~G~--~~v~~l~GG~~~w~ 349 (360)
||.+ |. |+.+++..|.+ .|+ .++++|+||+.+|.
T Consensus 72 ~C~~~g~-rs~~a~~~l~~~l~~~G~~~~~v~~l~GG~~~w~ 112 (113)
T cd01443 72 YCGSSQG-RGPRAARWFADYLRKVGESLPKSYILTGGIKAWY 112 (113)
T ss_pred ECCCCCc-ccHHHHHHHHHHHhccCCCCCeEEEECChhhhhc
Confidence 9997 46 88777766543 475 78999999999996
No 51
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.69 E-value=2.5e-17 Score=148.79 Aligned_cols=118 Identities=19% Similarity=0.193 Sum_probs=88.1
Q ss_pred cccCHHHHHHHhhhcCCCCCEEEEEcCC----------ccchhhccccccccccCCCcccCccCCCCCCCCC----hhhh
Q psy3426 237 SSLSSTDLLDLINTRFKKPKVLVIDIRD----------NEEYVAESIIGSINIPLARIPDLESTDLGSMESS----PEMN 302 (360)
Q Consensus 237 ~~is~~~l~~~~~~~~~~~~~~iiDvR~----------~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~----~~~~ 302 (360)
..|+++++.+.+ ++++++|||||+ +.+|..||||||+|+|+..+.+........+... ...+
T Consensus 5 ~lvs~~~l~~~l----~~~~~~iiD~R~~~~~~~~~~~~~~y~~GHIpGA~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T PRK11493 5 WFVAADWLAEHI----DDPEIQIIDARMAPPGQEDRDVAAEYRAGHIPGAVFFDIEALSDHTSPLPHMMPRPETFAVAMR 80 (281)
T ss_pred cccCHHHHHHhc----CCCCeEEEEeeCCCCCccccchHHHHHhCcCCCCEEcCHHHhcCCCCCCCCCCCCHHHHHHHHH
Confidence 568999999999 678899999996 5789999999999999765431100000000000 1222
Q ss_pred hHHhcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccccCcccCCCC
Q psy3426 303 ILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLGPGI 358 (360)
Q Consensus 303 ~~~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~~~~ 358 (360)
.+...++++||+||.++...+.++++.|...|+++|++|+||+.+|.++|++++..
T Consensus 81 ~~Gi~~d~~VVvyc~~~~~~a~~~~~~l~~~G~~~v~~l~GG~~~W~~~g~p~~~~ 136 (281)
T PRK11493 81 ELGVNQDKHLVVYDEGNLFSAPRAWWMLRTFGVEKVSILAGGLAGWQRDDLLLEEG 136 (281)
T ss_pred HcCCCCCCEEEEECCCCCchHHHHHHHHHHhcCCcEEEcCCCHHHHHHcCCCccCC
Confidence 33345688999999987624678889999999999999999999999999987755
No 52
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.69 E-value=6e-17 Score=159.44 Aligned_cols=117 Identities=17% Similarity=0.258 Sum_probs=89.8
Q ss_pred cccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCC----ChhhhhHHhcCCCeE
Q psy3426 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMES----SPEMNILFNNKGSII 312 (360)
Q Consensus 237 ~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~i 312 (360)
..|+++++.+++ ++++++|||||++.+|..||||||+|+|++..........+.+.. ....+.+...++++|
T Consensus 9 ~lIs~~eL~~~l----~~~~vvIIDvR~~~eY~~GHIPGAv~i~~~~~~~~~~~~~~~lp~~~~l~~~l~~lGI~~d~~V 84 (610)
T PRK09629 9 LVIEPNDLLERL----DAPELILVDLTSSARYEAGHIRGARFVDPKRTQLGKPPAPGLLPDTADLEQLFGELGHNPDAVY 84 (610)
T ss_pred ceecHHHHHHHh----cCCCEEEEECCChHHHHhCCCCCcEEcChhHhhccCCCCCCCCCCHHHHHHHHHHcCCCCCCEE
Confidence 479999999999 667899999999999999999999999976432110000111111 122333444578899
Q ss_pred EEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccccCcccCCC
Q psy3426 313 VIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLGPG 357 (360)
Q Consensus 313 v~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~~~ 357 (360)
|+||++|..+|.+++|.|+..|+++|++|+||+.+|+++|+++..
T Consensus 85 VvYd~~g~~~A~R~~w~L~~~G~~~V~iLdGG~~aW~~ag~p~~~ 129 (610)
T PRK09629 85 VVYDDEGGGWAGRFIWLLDVIGHSGYHYLDGGVLAWEAQALPLST 129 (610)
T ss_pred EEECCCCCchHHHHHHHHHHcCCCCEEEcCCCHHHHHHcCCcccc
Confidence 999998743788999999999999999999999999999998653
No 53
>TIGR02981 phageshock_pspE phage shock operon rhodanese PspE. Members of this very narrowly defined protein family are proteins active as rhodanese (EC 2.8.1.1) and found in the extended variants of the phage shock protein (psp operon) in Escherichia coli and a few closely related species. Note that the designation phage shock protein PspE has been applied, incorrectly, in many instances where the genome lacks the phage shock regulon entirely.
Probab=99.69 E-value=2e-17 Score=125.03 Aligned_cols=80 Identities=20% Similarity=0.349 Sum_probs=66.9
Q ss_pred CCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCCCchhHHHHHHHHHHcC
Q psy3426 255 PKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLG 334 (360)
Q Consensus 255 ~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G 334 (360)
....+||+|+++||.+||||||+|+|..++. ........+++++||+||.+|. +|..++..|.+.|
T Consensus 17 ~~~~lIDvR~~~ef~~ghIpgAinip~~~l~-------------~~l~~~~~~~~~~vvlyC~~G~-rS~~aa~~L~~~G 82 (101)
T TIGR02981 17 AAEHWIDVRIPEQYQQEHIQGAINIPLKEIK-------------EHIATAVPDKNDTVKLYCNAGR-QSGMAKDILLDMG 82 (101)
T ss_pred cCCEEEECCCHHHHhcCCCCCCEECCHHHHH-------------HHHHHhCCCCCCeEEEEeCCCH-HHHHHHHHHHHcC
Confidence 4567999999999999999999999998663 1112222345678999999999 9999999999999
Q ss_pred CCcEEEecccccccc
Q psy3426 335 FPKVTYVHEHVNSFE 349 (360)
Q Consensus 335 ~~~v~~l~GG~~~w~ 349 (360)
|++++++ ||+.+|.
T Consensus 83 ~~~v~~~-GG~~~~~ 96 (101)
T TIGR02981 83 YTHAENA-GGIKDIA 96 (101)
T ss_pred CCeEEec-CCHHHhh
Confidence 9999985 9999996
No 54
>PRK05320 rhodanese superfamily protein; Provisional
Probab=99.68 E-value=5.5e-17 Score=143.25 Aligned_cols=107 Identities=13% Similarity=0.133 Sum_probs=83.3
Q ss_pred cccccCHHHHHHHhhhcC--CCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeE
Q psy3426 235 FCSSLSSTDLLDLINTRF--KKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSII 312 (360)
Q Consensus 235 ~~~~is~~~l~~~~~~~~--~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 312 (360)
..+.++++++.++++... .+++.++||||++.||+.||||||+|+|.+.+.. ..+.+ .......++++|
T Consensus 108 ~~~~is~~el~~~l~~~~~~~~~~~vlIDVR~~~E~~~Ghi~GAiniPl~~f~~----~~~~l-----~~~~~~~kdk~I 178 (257)
T PRK05320 108 RAPSVDAATLKRWLDQGHDDAGRPVVMLDTRNAFEVDVGTFDGALDYRIDKFTE----FPEAL-----AAHRADLAGKTV 178 (257)
T ss_pred cCceeCHHHHHHHHhccccccCCCeEEEECCCHHHHccCccCCCEeCChhHhhh----hHHHH-----HhhhhhcCCCeE
Confidence 457899999998873211 1245899999999999999999999999986630 00000 011112267899
Q ss_pred EEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccccC
Q psy3426 313 VIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECY 351 (360)
Q Consensus 313 v~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~ 351 (360)
++||.+|. |+..++..|++.||++|+.|.||+.+|.+.
T Consensus 179 vvyC~~G~-Rs~~Aa~~L~~~Gf~~V~~L~GGi~~w~~~ 216 (257)
T PRK05320 179 VSFCTGGI-RCEKAAIHMQEVGIDNVYQLEGGILKYFEE 216 (257)
T ss_pred EEECCCCH-HHHHHHHHHHHcCCcceEEeccCHHHHHHh
Confidence 99999999 999999999999999999999999999763
No 55
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.68 E-value=7.4e-17 Score=148.02 Aligned_cols=118 Identities=18% Similarity=0.181 Sum_probs=87.9
Q ss_pred cccCHHHHHHHhhhcCCCCCEEEEEcC--------C-ccchhhccccccccccCCCcccCccCCCCCCC----CChhhhh
Q psy3426 237 SSLSSTDLLDLINTRFKKPKVLVIDIR--------D-NEEYVAESIIGSINIPLARIPDLESTDLGSME----SSPEMNI 303 (360)
Q Consensus 237 ~~is~~~l~~~~~~~~~~~~~~iiDvR--------~-~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~----~~~~~~~ 303 (360)
..|+++++.+.+ ++++++|||+| + ..+|..||||||+|+|+..+.+........+. +....+.
T Consensus 22 ~lvs~~~L~~~l----~~~~~~IiDvr~~~~~~~r~~~~~y~~gHIPgAi~i~~~~~~~~~~~~~~~lp~~~~~~~~l~~ 97 (320)
T PLN02723 22 PVVSVDWLHANL----REPDVKVLDASWYMPDEQRNPIQEYQVAHIPGALFFDLDGISDRTTDLPHMLPSEEAFAAAVSA 97 (320)
T ss_pred ceecHHHHHHHh----cCCCeEEEEeeccccCCCCchHHHHHhccCCCCeecCHHHhcCCCCCcCCCCCCHHHHHHHHHH
Confidence 589999999999 56789999996 3 36899999999999998765411100000000 0122233
Q ss_pred HHhcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccccCcccCCCC
Q psy3426 304 LFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLGPGI 358 (360)
Q Consensus 304 ~~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~~~~ 358 (360)
+...++++||+||++|...+.++++.|+..|+++|++|+||+.+|+++|+++++.
T Consensus 98 ~Gi~~~~~VVvY~~~g~~~a~r~~~~L~~~G~~~V~~LdGG~~~W~~~G~pv~~~ 152 (320)
T PLN02723 98 LGIENKDGVVVYDGKGIFSAARVWWMFRVFGHEKVWVLDGGLPKWRASGYDVESS 152 (320)
T ss_pred cCCCCCCEEEEEcCCCcchHHHHHHHHHHcCCCceEEcCCCHHHHHHcCCCcccC
Confidence 3444678999999888635678889999999999999999999999999988764
No 56
>COG0607 PspE Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.68 E-value=1.1e-16 Score=123.95 Aligned_cols=92 Identities=25% Similarity=0.335 Sum_probs=78.7
Q ss_pred CCCCEEEEEcCCccchhhccccc-cccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCCCchhHHHHHHHHH
Q psy3426 253 KKPKVLVIDIRDNEEYVAESIIG-SINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIV 331 (360)
Q Consensus 253 ~~~~~~iiDvR~~~e~~~ghIpg-A~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~~s~~~~~~L~ 331 (360)
...+.++||||++.||+.+|||| +.|+|..++.. .. .....++++++|+||.+|. ||..++..|+
T Consensus 17 ~~~~~~liDvR~~~e~~~~~i~~~~~~ip~~~~~~-------~~------~~~~~~~~~~ivv~C~~G~-rS~~aa~~L~ 82 (110)
T COG0607 17 AGEDAVLLDVREPEEYERGHIPGAAINIPLSELKA-------AE------NLLELPDDDPIVVYCASGV-RSAAAAAALK 82 (110)
T ss_pred ccCCCEEEeccChhHhhhcCCCcceeeeecccchh-------hh------cccccCCCCeEEEEeCCCC-ChHHHHHHHH
Confidence 45679999999999999999999 99999998751 00 0000356889999999999 9999999999
Q ss_pred HcCCCcEEEecccccccccCcccCCCC
Q psy3426 332 RLGFPKVTYVHEHVNSFECYGVLGPGI 358 (360)
Q Consensus 332 ~~G~~~v~~l~GG~~~w~~~gl~~~~~ 358 (360)
..||++++.+.||+.+|..+|++.+..
T Consensus 83 ~~G~~~~~~l~gG~~~w~~~~~~~~~~ 109 (110)
T COG0607 83 LAGFTNVYNLDGGIDAWKGAGLPLVRG 109 (110)
T ss_pred HcCCccccccCCcHHHHHhcCCCcccC
Confidence 999999989999999999999987754
No 57
>PRK10287 thiosulfate:cyanide sulfurtransferase; Provisional
Probab=99.67 E-value=3.3e-17 Score=124.27 Aligned_cols=81 Identities=17% Similarity=0.325 Sum_probs=67.1
Q ss_pred CCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCCCchhHHHHHHHHHHc
Q psy3426 254 KPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRL 333 (360)
Q Consensus 254 ~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~~s~~~~~~L~~~ 333 (360)
..+-.+||+|++.||+.||||||+|+|...+. ...+.+..+++++||+||++|. +|..++..|.+.
T Consensus 18 ~~~~~lIDvR~~~ef~~ghIpGAiniP~~~l~-------------~~l~~l~~~~~~~IVlyC~~G~-rS~~aa~~L~~~ 83 (104)
T PRK10287 18 FAAEHWIDVRVPEQYQQEHVQGAINIPLKEVK-------------ERIATAVPDKNDTVKLYCNAGR-QSGQAKEILSEM 83 (104)
T ss_pred cCCCEEEECCCHHHHhcCCCCccEECCHHHHH-------------HHHHhcCCCCCCeEEEEeCCCh-HHHHHHHHHHHc
Confidence 34457999999999999999999999987653 1122333345678999999999 999999999999
Q ss_pred CCCcEEEecccccccc
Q psy3426 334 GFPKVTYVHEHVNSFE 349 (360)
Q Consensus 334 G~~~v~~l~GG~~~w~ 349 (360)
||+++++ .||+.+|.
T Consensus 84 G~~~v~~-~GG~~~~~ 98 (104)
T PRK10287 84 GYTHAEN-AGGLKDIA 98 (104)
T ss_pred CCCeEEe-cCCHHHHh
Confidence 9999987 79999995
No 58
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=99.66 E-value=1.5e-16 Score=144.57 Aligned_cols=104 Identities=17% Similarity=0.206 Sum_probs=85.1
Q ss_pred ccccccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEE
Q psy3426 234 EFCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIV 313 (360)
Q Consensus 234 ~~~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 313 (360)
.....++++++.+++ .++++++||||++.||+.||||||+|+|...+.+ ... .....+...++++||
T Consensus 109 ~~~~~is~~el~~~l----~~~~~vlIDVR~~~E~~~GhI~GAi~ip~~~~~~-------~~~--~l~~~~~~~kdk~Iv 175 (314)
T PRK00142 109 NVGTYLKPKEVNELL----DDPDVVFIDMRNDYEYEIGHFENAIEPDIETFRE-------FPP--WVEENLDPLKDKKVV 175 (314)
T ss_pred cCCcccCHHHHHHHh----cCCCeEEEECCCHHHHhcCcCCCCEeCCHHHhhh-------hHH--HHHHhcCCCCcCeEE
Confidence 345789999999998 5678999999999999999999999999987640 000 000122234678999
Q ss_pred EEcCCCchhHHHHHHHHHHcCCCcEEEecccccccccC
Q psy3426 314 IVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECY 351 (360)
Q Consensus 314 ~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~ 351 (360)
+||.+|. |+..++..|.+.||++|++|+||+.+|.+.
T Consensus 176 vyC~~G~-Rs~~aa~~L~~~Gf~~V~~L~GGi~~w~~~ 212 (314)
T PRK00142 176 MYCTGGI-RCEKASAWMKHEGFKEVYQLEGGIITYGED 212 (314)
T ss_pred EECCCCc-HHHHHHHHHHHcCCCcEEEecchHHHHHHh
Confidence 9999999 999999999999999999999999999763
No 59
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=99.62 E-value=1.1e-15 Score=144.01 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=85.6
Q ss_pred cccccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEE
Q psy3426 235 FCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVI 314 (360)
Q Consensus 235 ~~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~ 314 (360)
..+.|+++++.++++ .+.++++||+|++.||+.||||||+|+|+..+. .. ......+++++||+
T Consensus 285 ~~~~Is~~el~~~l~---~~~~~~lIDvR~~~ef~~ghIpGAinip~~~l~------~~-------~~~~~l~~d~~iVv 348 (392)
T PRK07878 285 AGSTITPRELKEWLD---SGKKIALIDVREPVEWDIVHIPGAQLIPKSEIL------SG-------EALAKLPQDRTIVL 348 (392)
T ss_pred CCCccCHHHHHHHHh---CCCCeEEEECCCHHHHhcCCCCCCEEcChHHhc------ch-------hHHhhCCCCCcEEE
Confidence 456899999999882 234689999999999999999999999998763 10 01112246789999
Q ss_pred EcCCCchhHHHHHHHHHHcCCCcEEEecccccccccCccc
Q psy3426 315 VGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVL 354 (360)
Q Consensus 315 ~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~ 354 (360)
||++|. +|..+++.|.+.||++|++++||+.+|++++.+
T Consensus 349 yC~~G~-rS~~aa~~L~~~G~~~V~~L~GG~~~W~~~~~~ 387 (392)
T PRK07878 349 YCKTGV-RSAEALAALKKAGFSDAVHLQGGVVAWAKQVDP 387 (392)
T ss_pred EcCCCh-HHHHHHHHHHHcCCCcEEEecCcHHHHHHhcCC
Confidence 999999 999999999999999999999999999988764
No 60
>PLN02723 3-mercaptopyruvate sulfurtransferase
Probab=99.61 E-value=5.9e-16 Score=142.04 Aligned_cols=112 Identities=17% Similarity=0.146 Sum_probs=85.7
Q ss_pred ccCHHHHHHHhhhcCCCCCEEEEEcCCccch-----------hhccccccccccCCCcccCccCCCCCCCCChhh-hhH-
Q psy3426 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEY-----------VAESIIGSINIPLARIPDLESTDLGSMESSPEM-NIL- 304 (360)
Q Consensus 238 ~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~-----------~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~-~~~- 304 (360)
.++.+++...+ .+++.++||+|++.|| ..||||||+|+|+..+.+ ..+.+...... +.+
T Consensus 191 ~~~~~~v~~~~----~~~~~~iiD~R~~~ef~G~~~~~~~~~~~GHIPgAvnip~~~~~~----~~~~~~~~~el~~~~~ 262 (320)
T PLN02723 191 VWTLEQVKKNI----EDKTYQHIDARSKARFDGAAPEPRKGIRSGHIPGSKCVPFPQMLD----SSQTLLPAEELKKRFE 262 (320)
T ss_pred eecHHHHHHhh----cCCCeEEEECCCcccccCCCCCCCCCCcCCcCCCCcccCHHHhcC----CCCCCCCHHHHHHHHH
Confidence 47889998888 5667889999999888 469999999999876531 11222222112 222
Q ss_pred --HhcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccccC-cccCCCC
Q psy3426 305 --FNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECY-GVLGPGI 358 (360)
Q Consensus 305 --~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~-gl~~~~~ 358 (360)
...++++||+||.+|. +|..+++.|...||++|++|+||+.+|... ++|++.+
T Consensus 263 ~~gi~~~~~iv~yC~sG~-~A~~~~~~L~~~G~~~v~~YdGs~~eW~~~~~~Pv~~~ 318 (320)
T PLN02723 263 QEGISLDSPIVASCGTGV-TACILALGLHRLGKTDVPVYDGSWTEWGALPDTPVATS 318 (320)
T ss_pred hcCCCCCCCEEEECCcHH-HHHHHHHHHHHcCCCCeeEeCCCHHHHhcCCCCCccCC
Confidence 2346789999999999 999999999999999999999999999875 4666544
No 61
>PRK11493 sseA 3-mercaptopyruvate sulfurtransferase; Provisional
Probab=99.60 E-value=1.6e-15 Score=137.07 Aligned_cols=110 Identities=17% Similarity=0.259 Sum_probs=83.8
Q ss_pred cCHHHHHHHhhhcCCCCCEEEEEcCCccchh-----------hccccccccccCCCcccCccCCCCCCCCChhh-hhHH-
Q psy3426 239 LSSTDLLDLINTRFKKPKVLVIDIRDNEEYV-----------AESIIGSINIPLARIPDLESTDLGSMESSPEM-NILF- 305 (360)
Q Consensus 239 is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~-----------~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~- 305 (360)
++.+++...+ .+++.++||+|++.||. .||||||+|+|+..+. ..+.+...... ..+.
T Consensus 155 ~~~~~v~~~~----~~~~~~llD~R~~~e~~G~~~~~~~~~~~GhIpgA~~i~~~~~~-----~~~~~~~~~~l~~~~~~ 225 (281)
T PRK11493 155 VRLTDVLLAS----HEKTAQIVDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELV-----REGELKTTDELDAIFFG 225 (281)
T ss_pred ecHHHHHHhh----cCCCcEEEeCCCccceeeeccCCCCCcccccCCCcCCCCHHHhc-----CCCCcCCHHHHHHHHHh
Confidence 4556666655 45568999999999985 6999999999988763 12222221111 1222
Q ss_pred --hcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccccccc-CcccCCCC
Q psy3426 306 --NNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFEC-YGVLGPGI 358 (360)
Q Consensus 306 --~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~-~gl~~~~~ 358 (360)
..++++||+||.+|. +|..++..|...|+++|++|+||+.+|.. .|+|++.+
T Consensus 226 ~g~~~~~~ii~yC~~G~-~A~~~~~~l~~~G~~~v~~y~Gs~~eW~~~~~~P~~~~ 280 (281)
T PRK11493 226 RGVSFDRPIIASCGSGV-TAAVVVLALATLDVPNVKLYDGAWSEWGARADLPVEPA 280 (281)
T ss_pred cCCCCCCCEEEECCcHH-HHHHHHHHHHHcCCCCceeeCCCHHHHccCCCCCcCCC
Confidence 245779999999999 99999999999999999999999999998 78988754
No 62
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.58 E-value=3.6e-15 Score=132.06 Aligned_cols=120 Identities=15% Similarity=0.106 Sum_probs=90.0
Q ss_pred ccccCHHHHHHHhhhcCCCC-----CEEEEEcCCc--cchhhccccccccccCCCcccCccCCCCCCCC----ChhhhhH
Q psy3426 236 CSSLSSTDLLDLINTRFKKP-----KVLVIDIRDN--EEYVAESIIGSINIPLARIPDLESTDLGSMES----SPEMNIL 304 (360)
Q Consensus 236 ~~~is~~~l~~~~~~~~~~~-----~~~iiDvR~~--~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~----~~~~~~~ 304 (360)
...|+++++.+.+ .++ ++.+++++.. .+|..||||||++++++............+.. ...++.+
T Consensus 10 ~~lVs~~wl~~~l----~~~~~~~~d~~~~~~~~~~~~~Y~~~HIPGAv~~d~~~~~~~~~~~~~~lp~~e~fa~~~~~~ 85 (285)
T COG2897 10 EFLVSPDWLAENL----DDPAVVIVDARIILPDPDDAEEYLEGHIPGAVFFDWEADLSDPVPLPHMLPSPEQFAKLLGEL 85 (285)
T ss_pred ceEEcHHHHHhhc----cccccccCceEEEeCCcchHHHHHhccCCCCEecCHHHhhcCCCCCCCCCCCHHHHHHHHHHc
Confidence 4589999999988 433 6666666665 78999999999999988654111100111111 1233444
Q ss_pred HhcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccccCcccCCCCC
Q psy3426 305 FNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLGPGIP 359 (360)
Q Consensus 305 ~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~~~~~ 359 (360)
...++.+||+|++.+...|.+++|.|+..|+++|++|+||+++|+++|+++.+.|
T Consensus 86 GI~~d~tVVvYdd~~~~~A~ra~W~l~~~Gh~~V~iLdGG~~~W~~~g~p~~~~~ 140 (285)
T COG2897 86 GIRNDDTVVVYDDGGGFFAARAWWLLRYLGHENVRILDGGLPAWKAAGLPLETEP 140 (285)
T ss_pred CCCCCCEEEEECCCCCeehHHHHHHHHHcCCCceEEecCCHHHHHHcCCCccCCC
Confidence 5557889999998777689999999999999999999999999999999988543
No 63
>PRK09629 bifunctional thiosulfate sulfurtransferase/phosphatidylserine decarboxylase; Provisional
Probab=99.57 E-value=3e-15 Score=147.50 Aligned_cols=114 Identities=14% Similarity=0.107 Sum_probs=87.4
Q ss_pred cccCHHHHHHHhhhcCCCCCEEEEEcCCccchh--------hccccccccccCCCcccCccCCCCCCCCChh-hhhH---
Q psy3426 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYV--------AESIIGSINIPLARIPDLESTDLGSMESSPE-MNIL--- 304 (360)
Q Consensus 237 ~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~--------~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~-~~~~--- 304 (360)
..++.+++.+.+ +++++++||+|++.||. .||||||+|+|+..+.+ ..+.+..... .+.+
T Consensus 147 ~~v~~e~v~~~l----~~~~~~iIDaR~~~ef~G~~~~~~r~GHIPGAvnip~~~~~~----~~~~lk~~~el~~~~~~~ 218 (610)
T PRK09629 147 PTATREYLQSRL----GAADLAIWDARAPTEYSGEKVVAAKGGHIPGAVNFEWTAGMD----KARNLRIRQDMPEILRDL 218 (610)
T ss_pred ccccHHHHHHhh----CCCCcEEEECCCccccCCcccccccCCCCCCCeecCHHHhcC----CCCCCCCHHHHHHHHHHc
Confidence 367899999888 56778999999999995 69999999999875431 1122222111 1222
Q ss_pred HhcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccccC-cccCCCCC
Q psy3426 305 FNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECY-GVLGPGIP 359 (360)
Q Consensus 305 ~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~-gl~~~~~~ 359 (360)
...++++||+||++|. +|..+++.|+..|+++|++|+||+.+|.+. ++|++..+
T Consensus 219 Gi~~~~~VVvYC~sG~-rAa~~~~~L~~lG~~~V~~YdGsw~eW~~~~~lPv~~~~ 273 (610)
T PRK09629 219 GITPDKEVITHCQTHH-RSGFTYLVAKALGYPRVKAYAGSWGEWGNHPDTPVEVPT 273 (610)
T ss_pred CCCCCCCEEEECCCCh-HHHHHHHHHHHcCCCCcEEeCCCHHHHhCCCCCccccCC
Confidence 2346789999999999 999999999999999999999999999875 57776543
No 64
>KOG2221|consensus
Probab=99.57 E-value=1.6e-15 Score=124.89 Aligned_cols=120 Identities=22% Similarity=0.365 Sum_probs=109.9
Q ss_pred eeccCCccCCCCcccC--ChhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHhhhhc
Q psy3426 3 CYFGFNLCHQYNELLS--SKTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKYLHN 80 (360)
Q Consensus 3 I~~Dv~Rt~~~~~~f~--~~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~~~~ 80 (360)
|+.|++|-||.|..|- ...+++.|+|+|.+|..++|+ .||||+=.-|+++++.. ..+.++||||++++++|++.
T Consensus 146 i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe--~g~cq~qapiaa~llmh--mp~rdaf~~~vqicekylqg 221 (267)
T KOG2221|consen 146 IHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPE--EGYCQAQAPIAAVLLMH--MPARDAFWCFVQICEKYLQG 221 (267)
T ss_pred hccccccCCCcccccccccccchHHHHHHHHHHHHhCch--hhhhhhhchHHHHHHhc--ccHHHHHHHHHHHHHHHccc
Confidence 7899999999999995 466788999999999999999 99999999999987764 57889999999999999999
Q ss_pred cCCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHH
Q psy3426 81 FFLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWF 127 (360)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~ 127 (360)
+|.+ ....++..-.++..|+++.+|..|.|+...++++..|...||
T Consensus 222 y~~s-gleaiq~dg~il~~Llkk~~~p~~rH~~~~kvdp~lym~ewF 267 (267)
T KOG2221|consen 222 YYSS-GLEAIQNDGGILEGLLKKASPPPYRHLGGDKVDPLLYMTEWF 267 (267)
T ss_pred cccc-chhhhhcccHHHHHHHHhcCCCCCcccccCCCCHHHhhhccC
Confidence 7765 577788888899999999999999999999999999999996
No 65
>cd01446 DSP_MapKP N-terminal regulatory rhodanese domain of dual specificity phosphatases (DSP), such as Mapk Phosphatase. This domain is believed to determine substrate specificity by binding the substrate, such as ERK2, and activating the C-terminal catalytic domain by inducing a conformational change. This domain has homology to the Rhodanese Homology Domain.
Probab=99.57 E-value=4.6e-15 Score=118.74 Aligned_cols=110 Identities=16% Similarity=0.197 Sum_probs=76.6
Q ss_pred ccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCC------CCChhhhhHHhcCCCe
Q psy3426 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSM------ESSPEMNILFNNKGSI 311 (360)
Q Consensus 238 ~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~ 311 (360)
.|+++++.+.++. .++++++||||++.+|..||||||+|+|...+.... ...+.. ........+...++++
T Consensus 1 ~is~~~l~~~l~~--~~~~~~iiDvR~~~~~~~~hI~~ai~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 77 (132)
T cd01446 1 TIDCAWLAALLRE--GGERLLLLDCRPFLEYSSSHIRGAVNVCCPTILRRR-LQGGKILLQQLLSCPEDRDRLRRGESLA 77 (132)
T ss_pred CcCHHHHHHHHhc--CCCCEEEEECCCHHHHhhCcccCcEecChHHHHHHh-hcccchhhhhhcCCHHHHHHHhcCCCCe
Confidence 3789999999831 125799999999999999999999999988532000 000100 0001112222235789
Q ss_pred EEEEcCCCchh---------HHHHHHHHHH--cCCCcEEEecccccccccC
Q psy3426 312 IVIVGGEDSMR---------QAKFARFIVR--LGFPKVTYVHEHVNSFECY 351 (360)
Q Consensus 312 iv~~c~~g~~~---------s~~~~~~L~~--~G~~~v~~l~GG~~~w~~~ 351 (360)
||+||+++. + +..++..|.+ .|+.+|++|+||+.+|++.
T Consensus 78 VVvYd~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~v~~L~GG~~~w~~~ 127 (132)
T cd01446 78 VVVYDESSS-DRERLREDSTAESVLGKLLRKLQEGCSVYLLKGGFEQFSSE 127 (132)
T ss_pred EEEEeCCCc-chhhccccchHHHHHHHHHHhcCCCceEEEEcchHHHHHhh
Confidence 999999886 3 6677777777 4778999999999999763
No 66
>PRK07411 hypothetical protein; Validated
Probab=99.55 E-value=6.8e-15 Score=138.25 Aligned_cols=108 Identities=20% Similarity=0.248 Sum_probs=84.3
Q ss_pred ccccccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEE
Q psy3426 234 EFCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIV 313 (360)
Q Consensus 234 ~~~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 313 (360)
.....|+++++.++++. ..+++++||||++.||+.||||||+|+|+.++. .... .+ ......++++||
T Consensus 279 ~~~~~Is~~el~~~l~~--~~~~~vlIDVR~~~E~~~ghIpGAiniP~~~l~------~~~~--~~--~l~~l~~d~~IV 346 (390)
T PRK07411 279 AEIPEMTVTELKALLDS--GADDFVLIDVRNPNEYEIARIPGSVLVPLPDIE------NGPG--VE--KVKELLNGHRLI 346 (390)
T ss_pred cccCccCHHHHHHHHhC--CCCCeEEEECCCHHHhccCcCCCCEEccHHHhh------cccc--hH--HHhhcCCCCeEE
Confidence 44578999999998831 123689999999999999999999999988664 1100 00 111223678999
Q ss_pred EEcCCCchhHHHHHHHHHHcCCCcEEEecccccccccCcccC
Q psy3426 314 IVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLG 355 (360)
Q Consensus 314 ~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~ 355 (360)
+||.+|. ||..+++.|++.||++ +.+.||+.+|+++..+.
T Consensus 347 vyC~~G~-RS~~aa~~L~~~G~~~-~~l~GG~~~W~~~~~p~ 386 (390)
T PRK07411 347 AHCKMGG-RSAKALGILKEAGIEG-TNVKGGITAWSREVDPS 386 (390)
T ss_pred EECCCCH-HHHHHHHHHHHcCCCe-EEecchHHHHHHhcCCC
Confidence 9999999 9999999999999985 57999999998886643
No 67
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=99.54 E-value=5.6e-15 Score=137.24 Aligned_cols=96 Identities=23% Similarity=0.303 Sum_probs=78.1
Q ss_pred ccccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEE
Q psy3426 236 CSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIV 315 (360)
Q Consensus 236 ~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~ 315 (360)
...++++++.... .+.++||||+++||+.||||||+|+|+..+. . .. ......++++||+|
T Consensus 260 ~~~i~~~~~~~~~------~~~~IIDVR~~~ef~~ghIpgAinip~~~l~------~-~~------~~~~~~~~~~Ivvy 320 (355)
T PRK05597 260 GEVLDVPRVSALP------DGVTLIDVREPSEFAAYSIPGAHNVPLSAIR------E-GA------NPPSVSAGDEVVVY 320 (355)
T ss_pred ccccCHHHHHhcc------CCCEEEECCCHHHHccCcCCCCEEeCHHHhh------h-cc------ccccCCCCCeEEEE
Confidence 3578888888543 4578999999999999999999999998663 1 00 01112457799999
Q ss_pred cCCCchhHHHHHHHHHHcCCCcEEEecccccccccC
Q psy3426 316 GGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECY 351 (360)
Q Consensus 316 c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~ 351 (360)
|.+|. +|..+++.|.+.||++|++++||+.+|+++
T Consensus 321 C~~G~-rS~~Aa~~L~~~G~~nV~~L~GGi~~W~~~ 355 (355)
T PRK05597 321 CAAGV-RSAQAVAILERAGYTGMSSLDGGIEGWLDS 355 (355)
T ss_pred cCCCH-HHHHHHHHHHHcCCCCEEEecCcHHHHhhC
Confidence 99999 999999999999999999999999999753
No 68
>COG2897 SseA Rhodanese-related sulfurtransferase [Inorganic ion transport and metabolism]
Probab=99.52 E-value=2e-14 Score=127.29 Aligned_cols=114 Identities=23% Similarity=0.286 Sum_probs=89.2
Q ss_pred cccCHHHHHHHhhhcCCCCCEEEEEcCCccchhh----------ccccccccccCCCcccCccCCCCCCCCChhhhhHH-
Q psy3426 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVA----------ESIIGSINIPLARIPDLESTDLGSMESSPEMNILF- 305 (360)
Q Consensus 237 ~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~----------ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~- 305 (360)
..++.+++.... +....++||+|++.+|.+ ||||||+|+|+..+.+ +...+......+.+.
T Consensus 156 ~~~~~~~~~~~~----~~~~~~liDaR~~~rf~G~~~ep~~~~~GHIPGAiNipw~~~~~----~~~~~~~~~~~~~l~~ 227 (285)
T COG2897 156 AVVDATLVADAL----EVPAVLLIDARSPERFRGKEPEPRDGKAGHIPGAINIPWTDLVD----DGGLFKSPEEIARLYA 227 (285)
T ss_pred ccCCHHHHHHHh----cCCCeEEEecCCHHHhCCCCCCCCCCCCCCCCCCcCcCHHHHhc----CCCccCcHHHHHHHHH
Confidence 466778888877 677888999999999998 9999999999998751 122222223333332
Q ss_pred ---hcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccccCc-ccCCCCC
Q psy3426 306 ---NNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYG-VLGPGIP 359 (360)
Q Consensus 306 ---~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~g-l~~~~~~ 359 (360)
..++++||+||.+|. +|......|...|+.++++|+|++..|-+.. .|++.++
T Consensus 228 ~~gi~~~~~vI~yCgsG~-~As~~~~al~~lg~~~~~lYdGSWsEWg~~~~~PV~~g~ 284 (285)
T COG2897 228 DAGIDPDKEVIVYCGSGV-RASVTWLALAELGGPNNRLYDGSWSEWGSDPDRPVETGE 284 (285)
T ss_pred hcCCCCCCCEEEEcCCch-HHHHHHHHHHHhCCCCcccccChHHHhhcCCCCccccCC
Confidence 346789999999999 9999999999999988899999999997754 4666554
No 69
>PRK11784 tRNA 2-selenouridine synthase; Provisional
Probab=99.52 E-value=1.1e-14 Score=133.83 Aligned_cols=107 Identities=15% Similarity=0.225 Sum_probs=75.5
Q ss_pred CHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCcc-------------------CCCCCCCCChh
Q psy3426 240 SSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLES-------------------TDLGSMESSPE 300 (360)
Q Consensus 240 s~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~-------------------~~~~~~~~~~~ 300 (360)
...++.+.+ ..+.++||||++.||..||||||+|+|+........ +..+.+. ..
T Consensus 4 ~~~~~~~~~-----~~~~~lIDVRsp~Ef~~ghIpgAiniPl~~~~er~~vgt~Ykq~g~~~a~~lg~~lv~~~l~--~~ 76 (345)
T PRK11784 4 DAQDFRALF-----LNDTPLIDVRSPIEFAEGHIPGAINLPLLNDEERAEVGTCYKQQGQFAAIALGHALVAGNIA--AH 76 (345)
T ss_pred cHHHHHHHH-----hCCCEEEECCCHHHHhcCCCCCeeeCCCCChhHHHhhchhhcccCHHHHHHhhhhhcchhHH--HH
Confidence 456666665 356799999999999999999999999964310000 0000000 00
Q ss_pred hh-hHHh--cCCCeEEEEcC-CCchhHHHHHHHHHHcCCCcEEEecccccccccCcccC
Q psy3426 301 MN-ILFN--NKGSIIVIVGG-EDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLG 355 (360)
Q Consensus 301 ~~-~~~~--~~~~~iv~~c~-~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~ 355 (360)
.. .... .++++||+||. +|. ||..+++.|...|+ ++++++||+.+|++.++++
T Consensus 77 ~~~~~~~~~~~~~~ivvyC~rgG~-RS~~aa~~L~~~G~-~v~~L~GG~~awr~~~~~~ 133 (345)
T PRK11784 77 REEAWADFPRANPRGLLYCWRGGL-RSGSVQQWLKEAGI-DVPRLEGGYKAYRRFVIDT 133 (345)
T ss_pred HHHHHHhcccCCCeEEEEECCCCh-HHHHHHHHHHHcCC-CcEEEcCCHHHHHHhhHHH
Confidence 01 1111 25789999995 677 99999999999999 5899999999999888643
No 70
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=99.50 E-value=1.5e-14 Score=130.98 Aligned_cols=99 Identities=15% Similarity=0.267 Sum_probs=68.0
Q ss_pred CEEEEEcCCccchhhccccccccccCCCcccCccC----C-CCCCCC-----------C-hhhhhH-H-hcCCCeEEEEc
Q psy3426 256 KVLVIDIRDNEEYVAESIIGSINIPLARIPDLEST----D-LGSMES-----------S-PEMNIL-F-NNKGSIIVIVG 316 (360)
Q Consensus 256 ~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~----~-~~~~~~-----------~-~~~~~~-~-~~~~~~iv~~c 316 (360)
+.++||||++.||..||||||+|+|+......... . .+.... . .....+ . ..+++.||+||
T Consensus 2 ~~~liDVRsp~Ef~~ghipgAiniPl~~~~er~~vgt~ykq~g~~~A~~lg~~~v~~~l~~~i~~~~~~~~~~~~vvvyC 81 (311)
T TIGR03167 2 FDPLIDVRSPAEFAEGHLPGAINLPLLNDEERAEVGTLYKQVGPFAAIKLGLALVSPNLAAHVEQWRAFADGPPQPLLYC 81 (311)
T ss_pred CCEEEECCCHHHHhcCCCcCCEecccccchhhhhhhhhhhcccHHHHHHHhHhhhhHHHHHHHHHHHhhcCCCCcEEEEE
Confidence 35799999999999999999999999642100000 0 000000 0 001111 1 12344599999
Q ss_pred C-CCchhHHHHHHHHHHcCCCcEEEecccccccccCcccCC
Q psy3426 317 G-EDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLGP 356 (360)
Q Consensus 317 ~-~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~~ 356 (360)
. +|. ||..+++.|...|+ ++++++||+.+|+..+....
T Consensus 82 ~~gG~-RS~~aa~~L~~~G~-~v~~L~GG~~aw~~~~~~~~ 120 (311)
T TIGR03167 82 WRGGM-RSGSLAWLLAQIGF-RVPRLEGGYKAYRRFVIDQL 120 (311)
T ss_pred CCCCh-HHHHHHHHHHHcCC-CEEEecChHHHHHHhhhhhh
Confidence 5 677 99999999999999 69999999999999886543
No 71
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=99.46 E-value=8.4e-14 Score=129.66 Aligned_cols=96 Identities=21% Similarity=0.324 Sum_probs=76.1
Q ss_pred cccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhcccc---ccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEE
Q psy3426 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESII---GSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIV 313 (360)
Q Consensus 237 ~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIp---gA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv 313 (360)
..++++++.+++ ++++.++||||++.||+.|||| ||+|+|.+.+. ... . ....+...++++||
T Consensus 271 ~~~~~~el~~~l----~~~~~~lIDVR~~~E~~~ghI~~~~gAinIPl~~l~------~~~-~---~~~~l~~~~~~~Iv 336 (370)
T PRK05600 271 ARTDTTSLIDAT----LNGSATLLDVREPHEVLLKDLPEGGASLKLPLSAIT------DDA-D---ILHALSPIDGDNVV 336 (370)
T ss_pred cccCHHHHHHHH----hcCCeEEEECCCHHHhhhccCCCCCccEeCcHHHhh------cch-h---hhhhccccCCCcEE
Confidence 378999999988 4556799999999999999998 59999998774 100 0 00122222334899
Q ss_pred EEcCCCchhHHHHHHHHHHcCCCc-EEEecccccc
Q psy3426 314 IVGGEDSMRQAKFARFIVRLGFPK-VTYVHEHVNS 347 (360)
Q Consensus 314 ~~c~~g~~~s~~~~~~L~~~G~~~-v~~l~GG~~~ 347 (360)
+||.+|. ||..++..|++.||++ |+++.||+.+
T Consensus 337 v~C~sG~-RS~~Aa~~L~~~G~~~~v~~l~GG~~~ 370 (370)
T PRK05600 337 VYCASGI-RSADFIEKYSHLGHELTLHNLPGGVNA 370 (370)
T ss_pred EECCCCh-hHHHHHHHHHHcCCCCceEEeccccCC
Confidence 9999999 9999999999999996 9999999864
No 72
>COG1054 Predicted sulfurtransferase [General function prediction only]
Probab=99.32 E-value=2e-12 Score=112.57 Aligned_cols=100 Identities=21% Similarity=0.243 Sum_probs=83.7
Q ss_pred cccccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhh-hhHHhcCCCeEE
Q psy3426 235 FCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEM-NILFNNKGSIIV 313 (360)
Q Consensus 235 ~~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iv 313 (360)
....|+|++..+++ .++++++||+|+..||+-||..||++.+...+. ++.++. ......++++|+
T Consensus 111 vG~yl~p~~wn~~l----~D~~~vviDtRN~YE~~iG~F~gAv~p~~~tFr----------efP~~v~~~~~~~~~KkVv 176 (308)
T COG1054 111 VGTYLSPKDWNELL----SDPDVVVIDTRNDYEVAIGHFEGAVEPDIETFR----------EFPAWVEENLDLLKDKKVV 176 (308)
T ss_pred ccCccCHHHHHHHh----cCCCeEEEEcCcceeEeeeeecCccCCChhhhh----------hhHHHHHHHHHhccCCcEE
Confidence 35689999999999 789999999999999999999999999888764 111111 233344678999
Q ss_pred EEcCCCchhHHHHHHHHHHcCCCcEEEecccccccc
Q psy3426 314 IVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFE 349 (360)
Q Consensus 314 ~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~ 349 (360)
.||.+|. |...+..+|+..||++|+.|+||+-.+.
T Consensus 177 myCTGGI-RCEKas~~m~~~GF~eVyhL~GGIl~Y~ 211 (308)
T COG1054 177 MYCTGGI-RCEKASAWMKENGFKEVYHLEGGILKYL 211 (308)
T ss_pred EEcCCce-eehhhHHHHHHhcchhhhcccchHHHHh
Confidence 9999999 9999999999999999999999987653
No 73
>KOG4436|consensus
Probab=99.29 E-value=3.2e-12 Score=123.34 Aligned_cols=178 Identities=16% Similarity=0.192 Sum_probs=152.2
Q ss_pred ceeccCCccCCCCcccCCh-h--------hHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHH
Q psy3426 2 FCYFGFNLCHQYNELLSSK-T--------GHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFST 72 (360)
Q Consensus 2 ~I~~Dv~Rt~~~~~~f~~~-~--------~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~ 72 (360)
+|..|++||+|.+.+|+.. + +++.|+++..+|....-+ ++||||=+.+++.+++. .+++.+|..++.
T Consensus 230 ~Irrdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E--~ifsqGs~~m~Gll~l~--~~~E~assv~~~ 305 (948)
T KOG4436|consen 230 IIRRDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLE--VIFSQGSAFMVGLLLLQ--MPVEEASSVKVQ 305 (948)
T ss_pred HHHHHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhh--hhhccchHHHHHHHHhc--CcHHHHHHHHHH
Confidence 6889999999999999742 3 478999999999999999 99999999999976654 578889999999
Q ss_pred HHHhhhhccCCCCChHHHHHHHHHHHHHHHHHcH-HHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhCC
Q psy3426 73 FIPKYLHNFFLRDNSAVVREYLSKFSHLIAFHDA-ELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLGD 151 (360)
Q Consensus 73 l~~~~~~~~~~~~~~~~~~~~~~~~~~lL~~~dp-~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~~ 151 (360)
+|..+...-.+.+....+...+..++...+...| .++.|+.+.+++.++|.-.||++.|...+|+...-++.|.+...|
T Consensus 306 lm~~~rl~~l~kpe~~~l~~~~~q~e~~~q~~sp~dl~sH~~eq~~h~S~~~rs~flt~~ltt~Pi~~a~r~~~~f~~eg 385 (948)
T KOG4436|consen 306 LMILYRLRELSKPEMEPLGLCMFQLECTNQDQSPMDLFSHFPEQHFHTSMYARSWFLTNFLTTFPIFMAARISDTFSSEG 385 (948)
T ss_pred HHHhhcccccCCcccchhHHHHHhhcccccccchhHHhhcccccCCCccHHHHHHHHHhhcccCchhhcccccccccccc
Confidence 9987655555666666677778888999999999 999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhHH-HHhcCCHHHHHHHhc
Q psy3426 152 ASFPLFIGVSILKQLRE-TLLSSGFNECILLFS 183 (360)
Q Consensus 152 ~~~~~~v~~ail~~~~~-~ll~~~~~~~l~~l~ 183 (360)
....+++.+|++...++ .++..|.......++
T Consensus 386 llk~fr~~ia~~~~~~d~~~~s~D~EG~~~~~q 418 (948)
T KOG4436|consen 386 LLKRFRDSIAYLHQLRDIELESLDMEGMLSYFQ 418 (948)
T ss_pred HHHHHhhhHHHHHHHhhhhhhccCccccccchh
Confidence 98889999999944333 444577777666654
No 74
>KOG3772|consensus
Probab=99.27 E-value=5.5e-12 Score=111.68 Aligned_cols=110 Identities=21% Similarity=0.235 Sum_probs=80.0
Q ss_pred hcccccccCHHHHHHHhhhcC--CCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHH-hcC
Q psy3426 232 LSEFCSSLSSTDLLDLINTRF--KKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILF-NNK 308 (360)
Q Consensus 232 ~~~~~~~is~~~l~~~~~~~~--~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 308 (360)
+...++.||++.++.+++... ....++|||||-+.||.+|||+||+|++..+.. ..+... ..... ..+
T Consensus 151 k~~~~k~Is~etl~~ll~~~~~~~~~~~~iiDcR~pyEY~GGHIkgavnl~~~~~~-------~~~f~~--~~~~~~~~~ 221 (325)
T KOG3772|consen 151 KSQDLKYISPETLKGLLQGKFSDFFDKFIIIDCRYPYEYEGGHIKGAVNLYSKELL-------QDFFLL--KDGVPSGSK 221 (325)
T ss_pred ccccccccCHHHHHHHHHhccccceeeEEEEEeCCcccccCcccccceecccHhhh-------hhhhcc--ccccccccC
Confidence 556678999999999995322 223478999999999999999999999987542 111000 01111 123
Q ss_pred CCeEEEEcCCCchhHHHHHHHHHH------------cCCCcEEEeccccccccc
Q psy3426 309 GSIIVIVGGEDSMRQAKFARFIVR------------LGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 309 ~~~iv~~c~~g~~~s~~~~~~L~~------------~G~~~v~~l~GG~~~w~~ 350 (360)
...+||||...+.|+.++|..|.. .-|+.+++|+||+..|-.
T Consensus 222 ~~i~IFhCefSq~RGP~mA~~lr~iDR~r~~~~yp~l~ypE~yiL~gGYk~ff~ 275 (325)
T KOG3772|consen 222 RVILIFHCEFSQERGPKMARHLRNIDRDRNSNDYPKLSYPELYILDGGYKEFFS 275 (325)
T ss_pred ceeEEEEeeeccccCHHHHHHHHHhhhhhhcccCcccccchheeecccHHHHHH
Confidence 457899999887799999999984 245689999999999854
No 75
>KOG1529|consensus
Probab=99.23 E-value=3.2e-11 Score=104.63 Aligned_cols=119 Identities=14% Similarity=0.118 Sum_probs=90.5
Q ss_pred cccCHHHHHHHhhhcCCCCCEEEEEcC---------CccchhhccccccccccCCCcccCccCCCCCCC----CChhhhh
Q psy3426 237 SSLSSTDLLDLINTRFKKPKVLVIDIR---------DNEEYVAESIIGSINIPLARIPDLESTDLGSME----SSPEMNI 303 (360)
Q Consensus 237 ~~is~~~l~~~~~~~~~~~~~~iiDvR---------~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~----~~~~~~~ 303 (360)
+.+++.++.+.+ .+++..+||+. ...||..-|||||.+++.+...+..+.....+. ++...+.
T Consensus 5 ~iv~~~~v~~~~----~~~~~~iLDaSw~~~~~~~~~~~e~~~~hipga~~fdld~~~~~s~~~~~~lp~~e~Fa~y~~~ 80 (286)
T KOG1529|consen 5 SIVSVKWVMENL----GNHGLRILDASWYFPPLRRIAEFEFLERHIPGASHFDLDIISYPSSPYRHMLPTAEHFAEYASR 80 (286)
T ss_pred cccChHHHHHhC----cCCCeEEEeeeeecCchhhhhhhhhhhccCCCceeeeccccccCCCcccccCccHHHHHHHHHh
Confidence 468899999988 66889999995 224788899999999999877522221111111 1123344
Q ss_pred HHhcCCCeEEEEcC--CCchhHHHHHHHHHHcCCCcEEEecccccccccCcccCCCCC
Q psy3426 304 LFNNKGSIIVIVGG--EDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLGPGIP 359 (360)
Q Consensus 304 ~~~~~~~~iv~~c~--~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~gl~~~~~~ 359 (360)
+...++.++|+|+. .|...|++++|.++-.|+++|++|+||+.+|+.+|.++....
T Consensus 81 lGi~n~d~vViYd~~~~Gm~~Asrv~W~fr~fGh~~VslL~GG~~~Wk~~g~~~~s~~ 138 (286)
T KOG1529|consen 81 LGVDNGDHVVIYDRGDGGMFSASRVWWTFRVFGHTKVSLLNGGFRAWKAAGGPVDSSK 138 (286)
T ss_pred cCCCCCCeEEEEcCCCcceeehhhHHHHHHHhCccEEEEecCcHHHHHHcCCcccccc
Confidence 55567889999998 555588999999999999999999999999999999987653
No 76
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=99.11 E-value=6.1e-11 Score=114.80 Aligned_cols=74 Identities=15% Similarity=0.216 Sum_probs=62.2
Q ss_pred CCCEEEEEcCCccchhhccccc----cccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCCCchhHHHHHHH
Q psy3426 254 KPKVLVIDIRDNEEYVAESIIG----SINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARF 329 (360)
Q Consensus 254 ~~~~~iiDvR~~~e~~~ghIpg----A~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~~s~~~~~~ 329 (360)
.++.++||||+++||+.||||| |+|+|+..+. . .....++++++|+||.+|. +|..+|..
T Consensus 405 ~~~~~lIDVR~~~E~~~~hI~g~~~~a~niP~~~l~------~---------~~~~l~~~~~iivyC~~G~-rS~~aa~~ 468 (482)
T PRK01269 405 PPDDVIIDIRSPDEQEDKPLKLEGVEVKSLPFYKLS------T---------QFGDLDQSKTYLLYCDRGV-MSRLQALY 468 (482)
T ss_pred CCCCEEEECCCHHHHhcCCCCCCCceEEECCHHHHH------H---------HHhhcCCCCeEEEECCCCH-HHHHHHHH
Confidence 4578999999999999999999 9999998764 0 1111245779999999999 99999999
Q ss_pred HHHcCCCcEEEecc
Q psy3426 330 IVRLGFPKVTYVHE 343 (360)
Q Consensus 330 L~~~G~~~v~~l~G 343 (360)
|.+.||++|+++.+
T Consensus 469 L~~~G~~nv~~y~~ 482 (482)
T PRK01269 469 LREQGFSNVKVYRP 482 (482)
T ss_pred HHHcCCccEEecCC
Confidence 99999999998753
No 77
>KOG2017|consensus
Probab=98.97 E-value=4.2e-10 Score=99.61 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=78.7
Q ss_pred cccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEc
Q psy3426 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVG 316 (360)
Q Consensus 237 ~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c 316 (360)
..||..+.++.++ +.+..+++|||++.||+-.|+|+|+|||+.++.+. .+ + ...+.. ....++|+++|
T Consensus 317 ~Rvsv~d~k~il~---~~~~h~llDvRp~~~~eI~~lP~avNIPL~~l~~~----~~--~--~~~~~~-~~~~~~I~ViC 384 (427)
T KOG2017|consen 317 ERVSVTDYKRILD---SGAKHLLLDVRPSHEYEICRLPEAVNIPLKELRSR----SG--K--KLQGDL-NTESKDIFVIC 384 (427)
T ss_pred hcccHHHHHHHHh---cCCCeEEEeccCcceEEEEecccccccchhhhhhh----hh--h--hhcccc-cccCCCEEEEe
Confidence 4889999999983 44789999999999999999999999999987511 11 0 001111 12345799999
Q ss_pred CCCchhHHHHHHHHHHcCC-CcEEEecccccccccC
Q psy3426 317 GEDSMRQAKFARFIVRLGF-PKVTYVHEHVNSFECY 351 (360)
Q Consensus 317 ~~g~~~s~~~~~~L~~~G~-~~v~~l~GG~~~w~~~ 351 (360)
..|. .|.+|++.|+..+. ..|.-+.||+.+|..+
T Consensus 385 rrGN-dSQ~Av~~Lre~~~~~~vrDvigGl~~w~~~ 419 (427)
T KOG2017|consen 385 RRGN-DSQRAVRILREKFPDSSVRDVIGGLKAWAAK 419 (427)
T ss_pred CCCC-chHHHHHHHHhhCCchhhhhhhhHHHHHHHh
Confidence 9999 99999999987654 4566789999999875
No 78
>KOG2801|consensus
Probab=98.89 E-value=2.3e-08 Score=86.70 Aligned_cols=178 Identities=15% Similarity=0.193 Sum_probs=132.3
Q ss_pred ChhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHh--hhhccCCCCChHHHHHHHHH
Q psy3426 19 SKTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPK--YLHNFFLRDNSAVVREYLSK 96 (360)
Q Consensus 19 ~~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~ 96 (360)
+..+.-..++||.+.++..|+ +++|+.+..+++.++... -||++||.-.++++.. .-.... ....-.....+..
T Consensus 107 nargegavrkilKOGanqfpd--isfcpalpavvalllhys-ideaecfekacrilacndpgrrli-dqsflafesscmt 182 (559)
T KOG2801|consen 107 NARGEGAVRKILLCLANQFPD--ISFCPALPAVVALLLHYS-IDEAECFEKACRILACNDPGRRLI-DQSFLAFESSCMT 182 (559)
T ss_pred cCcCchhHHHHHHHHhccCCC--cccCcchHHHHHHHHHhc-ccHHHHHHHhheeeeecCcchhhh-hhHHHHHHhhhhh
Confidence 345566899999999999999 999999999999777655 6899999988887622 111111 1112234456678
Q ss_pred HHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhHHHHhc----
Q psy3426 97 FSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLGDASFPLFIGVSILKQLRETLLS---- 172 (360)
Q Consensus 97 ~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~~~~~~~~v~~ail~~~~~~ll~---- 172 (360)
|..++.+++..-++.+....-+.......|-..+|. ++|+-...|++|.|+.+|.+.++.+++|+++.+.+.--.
T Consensus 183 fgdlvnkycqaahklmvavsedvlqvyadwqrwlfg-elplcyfarvfdvflvegykvlyrvalailkffhkvragqple 261 (559)
T KOG2801|consen 183 FGDLVNKYCQAAHKLMVAVSEDVLQVYADWQRWLFG-ELPLCYFARVFDVFLVEGYKVLYRVALAILKFFHKVRAGQPLE 261 (559)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhc-cchHHHHHHHhhheeecchHHHHHHHHHHHHHHHHhhcCCCCc
Confidence 888999988888877776655544556688888886 899999999999999999999999999999998775543
Q ss_pred CCH--HHHHHHhcCCC-CCCHHHHHHHHHHhH
Q psy3426 173 SGF--NECILLFSDLP-EVDIEQSVTDSIDIY 201 (360)
Q Consensus 173 ~~~--~~~l~~l~~~~-~~d~~~li~~A~~l~ 201 (360)
+|+ .++-.+.+++. .+..++++..|..+.
T Consensus 262 sdsvkqdirtfvrdiaktvspekllekafair 293 (559)
T KOG2801|consen 262 SDSVKQDIRTFVRDIAKTVSPEKLLEKAFAIR 293 (559)
T ss_pred cchHHHHHHHHHHHHHhhCCHHHHHHHHHHHH
Confidence 232 34445566665 567888888876653
No 79
>COG5105 MIH1 Mitotic inducer, protein phosphatase [Cell division and chromosome partitioning]
Probab=98.73 E-value=3.4e-08 Score=86.49 Aligned_cols=108 Identities=19% Similarity=0.300 Sum_probs=78.4
Q ss_pred hhhhhhcccccccCHHHHHHHhhhcC--CCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCChhhhhH
Q psy3426 227 RHNQALSEFCSSLSSTDLLDLINTRF--KKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNIL 304 (360)
Q Consensus 227 ~~~~~~~~~~~~is~~~l~~~~~~~~--~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (360)
+..+-+....+.|+++.++..++..- .--+++|||||-+.||.+|||-.|+||.-.+-. ..+
T Consensus 232 ~~~~~k~Ds~~RIs~etlk~vl~g~~~~~f~kCiIIDCRFeYEY~GGHIinaVNi~s~~~l----------------~~~ 295 (427)
T COG5105 232 TLGPGKSDSIQRISVETLKQVLEGMYNIDFLKCIIIDCRFEYEYRGGHIINAVNISSTKKL----------------GLL 295 (427)
T ss_pred cCCCCcccchhhcCHHHHHHHHhchhhhhhhceeEEeecceeeecCceeeeeeecchHHHH----------------HHH
Confidence 44555667789999999999883211 123588999999999999999999998765321 111
Q ss_pred Hhc----CCCeEEEEcCCCchhHHHHHHHHHHc------------CCCcEEEeccccccccc
Q psy3426 305 FNN----KGSIIVIVGGEDSMRQAKFARFIVRL------------GFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 305 ~~~----~~~~iv~~c~~g~~~s~~~~~~L~~~------------G~~~v~~l~GG~~~w~~ 350 (360)
-.. ....+|+.|....-|+...|..|+.. -|+.|++|+||+.++-+
T Consensus 296 F~hkplThp~aLifHCEfSshRaP~LA~HlRN~DR~~N~dhYP~L~yPevyIl~GGYk~fy~ 357 (427)
T COG5105 296 FRHKPLTHPRALIFHCEFSSHRAPRLAQHLRNMDRMKNPDHYPLLTYPEVYILEGGYKKFYS 357 (427)
T ss_pred HHhccccCceeEEEEeecccccchhHHHHHhhhhhhcCcccCcccccceEEEecCcHHHHhh
Confidence 111 14568999986543999999999753 25689999999987543
No 80
>KOG1529|consensus
Probab=98.56 E-value=6e-08 Score=84.53 Aligned_cols=94 Identities=14% Similarity=0.260 Sum_probs=70.1
Q ss_pred CCCCEEEEEcCCccch-----------hhccccccccccCCCcccCccCCCCCCCCChh-hhhHHh---cCCCeEEEEcC
Q psy3426 253 KKPKVLVIDIRDNEEY-----------VAESIIGSINIPLARIPDLESTDLGSMESSPE-MNILFN---NKGSIIVIVGG 317 (360)
Q Consensus 253 ~~~~~~iiDvR~~~e~-----------~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~-~~~~~~---~~~~~iv~~c~ 317 (360)
...++..+|.|...+| ..||||||+|+|+.++. .+.+....... ...+.. ..++++++-|.
T Consensus 169 ~~~~~~~~DaRs~grF~Gt~p~~~~~~~ggHIpGa~n~P~~~~~----~~~g~~k~~edl~~~f~~~~l~~~~p~~~sC~ 244 (286)
T KOG1529|consen 169 ATKNFQYLDARSKGRFDGTEPEPRSGATGGHIPGAINFPFDEVL----DPDGFIKPAEDLKHLFAQKGLKLSKPVIVSCG 244 (286)
T ss_pred ccccceeeeccccccccccCCCCcccCcCccCCCcccCChHHhc----ccccccCCHHHHHHHHHhcCcccCCCEEEeec
Confidence 4567999999987777 46899999999999875 22222221111 122211 23689999999
Q ss_pred CCchhHHHHHHHHHHcCCCcEEEecccccccccCc
Q psy3426 318 EDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYG 352 (360)
Q Consensus 318 ~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~g 352 (360)
.|. .+...+..|.+.| .++.+|+|++..|.-.+
T Consensus 245 ~Gi-sa~~i~~al~r~g-~~~~lYdGS~~Ew~~~~ 277 (286)
T KOG1529|consen 245 TGI-SASIIALALERSG-PDAKLYDGSWTEWALRA 277 (286)
T ss_pred cch-hHHHHHHHHHhcC-CCcceecccHHHHhhcC
Confidence 999 8999999999999 88999999999997543
No 81
>KOG1648|consensus
Probab=98.04 E-value=9.6e-08 Score=88.24 Aligned_cols=188 Identities=20% Similarity=0.394 Sum_probs=128.2
Q ss_pred ceeccCCccCCCCcccCChhhHHHHHHHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHhhhhcc
Q psy3426 2 FCYFGFNLCHQYNELLSSKTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKYLHNF 81 (360)
Q Consensus 2 ~I~~Dv~Rt~~~~~~f~~~~~~~~L~~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~~~~~ 81 (360)
-|++|+.|+..+.-+|+++...+. +++...|...|-+ -||.|||.++.+|++..+ .||..+-.||.-+|-.-...+
T Consensus 609 ~~~kd~e~~~~~~~~fs~~~~les-~~~~~~~~~~~l~--~~~~~~~~dl~~p~~~~~-ed~~~~~e~~s~~~~~q~~~~ 684 (813)
T KOG1648|consen 609 RIDKDVERCDRNLMFFSNKDNLES-RRVMYTYVRRNLE--EGYTQGMCDLLAPLLVTF-EDEALTLECFSLLMLRQRGKF 684 (813)
T ss_pred eecchhhhCcchheeecCCcchhh-heeeeeeeccccc--cccccchhhccCCcCCCh-hhcccccCCCcHHHHHhcccC
Confidence 378999999999999999888877 8899999999988 999999999999988765 788777777777764422222
Q ss_pred CCCCChHHHHHHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhC-----CCchHH
Q psy3426 82 FLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLG-----DASFPL 156 (360)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~-----~~~~~~ 156 (360)
- ..+++...+-... +++-.+|-. .-+. ..+...++|+..=|.++++.+.....|..++.. ...+-+
T Consensus 685 ~---q~~~~~~~l~~~r-~~~v~~~l~-s~id----~~qa~~f~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~i 755 (813)
T KOG1648|consen 685 P---QRPGMSKCLLNLR-LIQVVDPLI-SDID----YAQALSFRWFLLDFKRELSYECTYKVWEVIWAAQRLRITDDFAI 755 (813)
T ss_pred C---CCCCccccccccc-chhhhcchh-cchh----hhhhcceeeeccCcccccCCCCcceeeEeeccccccccCcchhh
Confidence 1 1223333322222 445555511 1111 112345899999999999999999999998865 245777
Q ss_pred HHHHHHHHHhHHHHhc--CCHHHHHHHhcCCCCCCHHHHHHHHHHhHhhCCCccc
Q psy3426 157 FIGVSILKQLRETLLS--SGFNECILLFSDLPEVDIEQSVTDSIDIYCVTPRSIT 209 (360)
Q Consensus 157 ~v~~ail~~~~~~ll~--~~~~~~l~~l~~~~~~d~~~li~~A~~l~~~~P~s~~ 209 (360)
++.++. ..+.+.++. .+..+++++++...+ ...-..++..+|+...
T Consensus 756 ~~g~~~-~~~~~~~~t~~~~~t~~i~~~~~~~e------~~~c~r~~~~~~~~~~ 803 (813)
T KOG1648|consen 756 FFGLAT-TNYHDVLITNNFDYTDMIKFFNEMAE------RHDCSRLLSSARTHVK 803 (813)
T ss_pred hhhhHH-HhhHHHHhhcccchHHHHHHHHHHHh------hhhhHHHHhcCcchHH
Confidence 888887 444455554 466778887765543 2233346666776643
No 82
>PF14961 BROMI: Broad-minded protein
Probab=97.76 E-value=0.00084 Score=69.41 Aligned_cols=166 Identities=14% Similarity=0.187 Sum_probs=116.0
Q ss_pred HHHHHHHHHcCCCCCcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHhh------hhccCC----CC------ChHHHH
Q psy3426 28 RVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKY------LHNFFL----RD------NSAVVR 91 (360)
Q Consensus 28 ~iL~~~~~~~p~~~i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~~------~~~~~~----~~------~~~~~~ 91 (360)
+++..|..+++. -+| .|..-.++.++++...|-..+...+.++-... .+.... +. -.+.-.
T Consensus 1088 ~~~~~~~~~~~~--~~y-~g~DWFvstvfli~~Gd~e~~~~fL~~fS~ll~SaflW~pRlh~s~~l~~~~~~s~i~p~~~ 1164 (1296)
T PF14961_consen 1088 HILFEFIHFCLQ--GSY-PGHDWFVSTVFLIMLGDKERSLQFLQRFSRLLTSAFLWPPRLHASIHLPVDTAESGIHPVYF 1164 (1296)
T ss_pred HHHhhhhcccCC--CCC-CCchhHHHHHHHHHcCChhHhHHHHHHHHHHHHHhHhccccccccccCCchhhhcCCCchhh
Confidence 344444445554 334 67777777666666677666776655554321 111111 10 001122
Q ss_pred HHHHHHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhHHHHh
Q psy3426 92 EYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLLGDASFPLFIGVSILKQLRETLL 171 (360)
Q Consensus 92 ~~~~~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~~l~~~~~~~~~v~~ail~~~~~~ll 171 (360)
.....++.+|+...|.++.-|.-.|..+...+.+|+..+|=+-+++..++.-.=..+..|+.|.+|+++|++++++++|+
T Consensus 1165 ~~~~~vE~ll~~E~P~V~saf~~sg~tpsqi~~rW~~QcFWnyldW~eI~~y~~~cil~G~dyqvY~~VailkHlq~~il 1244 (1296)
T PF14961_consen 1165 CSCHYVEMLLKAELPLVFSAFRMSGFTPSQICQRWLSQCFWNYLDWPEICHYIAICILYGPDYQVYICVAILKHLQPEIL 1244 (1296)
T ss_pred hHHHHHHHHHHhhccHHHHHHHHcCCCHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHhcCccceeehhHHHHHHhhHHHH
Confidence 34578999999999999999999999999999999999999999998888777777888999999999999999999999
Q ss_pred cCCH-HHHHHHhcCCC--CCCHHHHHHH
Q psy3426 172 SSGF-NECILLFSDLP--EVDIEQSVTD 196 (360)
Q Consensus 172 ~~~~-~~~l~~l~~~~--~~d~~~li~~ 196 (360)
.... .++..+++.-+ +..+.+-+.-
T Consensus 1245 q~~q~q~L~~flke~~l~gF~~~~~~~y 1272 (1296)
T PF14961_consen 1245 QHTQTQDLQVFLKEEALRGFRVSDYLEY 1272 (1296)
T ss_pred HhhhhchHHHHhhhccccceeHHhHHHH
Confidence 8433 34444555544 4555544443
No 83
>COG2603 Predicted ATPase [General function prediction only]
Probab=96.30 E-value=0.0011 Score=58.31 Aligned_cols=93 Identities=13% Similarity=0.156 Sum_probs=55.9
Q ss_pred CCEEEEEcCCccchhhccccccccccCCCcccCcc----CCCCCCCCChh---------------hhhHHhcCCCeEEEE
Q psy3426 255 PKVLVIDIRDNEEYVAESIIGSINIPLARIPDLES----TDLGSMESSPE---------------MNILFNNKGSIIVIV 315 (360)
Q Consensus 255 ~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~----~~~~~~~~~~~---------------~~~~~~~~~~~iv~~ 315 (360)
.+..+||||.|.||..|+.|+++|+|.-.-..... .+......... ..+.....+.++-++
T Consensus 14 ~~~~lid~rap~ef~~g~~~ia~nl~~~ndder~~Igt~yKk~~~~~a~alg~~~vcG~i~~~~l~ask~f~e~~~~Gi~ 93 (334)
T COG2603 14 ADTPLIDVRAPIEFENGAMPIAINLPLMNDDERQEIGTCYKKQGQDAAKALGHALVCGEIRQQRLEASKAFQEENPVGIL 93 (334)
T ss_pred cCCceeeccchHHHhcccchhhhccccccchHHHHHHHHHhhcCcHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCccee
Confidence 45689999999999999999999999753210000 00000000000 001011124456666
Q ss_pred cCCCchhHHHHHHHH-HHcCCCcEEEeccccccc
Q psy3426 316 GGEDSMRQAKFARFI-VRLGFPKVTYVHEHVNSF 348 (360)
Q Consensus 316 c~~g~~~s~~~~~~L-~~~G~~~v~~l~GG~~~w 348 (360)
|..|..++..++.+| ...|.+... ..||+.+.
T Consensus 94 c~rgg~rsk~v~~~l~~~~g~~~~r-~iGGeKal 126 (334)
T COG2603 94 CARGGLRSKIVQKWLGYAAGIDYPR-VIGGEKAL 126 (334)
T ss_pred eccccchhHHHHHHHHHHHHhhhhh-hhchHHHH
Confidence 887666999999999 556776444 67887654
No 84
>KOG1717|consensus
Probab=94.84 E-value=0.02 Score=49.74 Aligned_cols=104 Identities=15% Similarity=0.165 Sum_probs=59.2
Q ss_pred ccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcccCccCCCCCCCCC---hhhhhHHhc----CCC
Q psy3426 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESS---PEMNILFNN----KGS 310 (360)
Q Consensus 238 ~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~~~~~~~~~~~~~~---~~~~~~~~~----~~~ 310 (360)
.++.+|+...+ ..++.+++|||+ +..||.+|+++.+..+- .+.+..+.+... +........ +..
T Consensus 5 ~~s~~wlnr~l----~~~nllllDCRs----es~~i~~A~~valPalm-lrrl~~g~l~~ra~~p~~~d~~~~~~~c~~v 75 (343)
T KOG1717|consen 5 SKSVAWLNRQL----ELGNLLLLDCRS----ESSHIESAINVALPALM-LRRLTGGNLPVRALFPRSCDDKRFPARCGTV 75 (343)
T ss_pred HHHHHHHHhhc----ccCceEEEecCC----ccchhhhhhhhcchHHH-HHHHhCCCCcceeccCCccccccccccCCcc
Confidence 45778888877 677899999999 66799999998765431 001112222110 111111111 224
Q ss_pred eEEEEcCCCch-----hHHHH----HHHHHHcCCCcEEEecccccccccC
Q psy3426 311 IIVIVGGEDSM-----RQAKF----ARFIVRLGFPKVTYVHEHVNSFECY 351 (360)
Q Consensus 311 ~iv~~c~~g~~-----~s~~~----~~~L~~~G~~~v~~l~GG~~~w~~~ 351 (360)
.+|.|+.+..+ .++.+ -+.++..|.. ++.+.|||..++++
T Consensus 76 ~vilyD~~~~e~e~~~~~~s~Lg~ll~kl~~~g~~-a~yL~ggF~~fq~e 124 (343)
T KOG1717|consen 76 TVILYDESSAEWEEETGAESVLGLLLKKLKDEGCS-ARYLSGGFSKFQAE 124 (343)
T ss_pred eeeecccccccccccchhhhHHHHHHHHHHhcCcc-hhhhhcccchhhhh
Confidence 67788776221 11221 2333445775 77899999877654
No 85
>PRK00142 putative rhodanese-related sulfurtransferase; Provisional
Probab=93.00 E-value=0.0077 Score=55.23 Aligned_cols=43 Identities=9% Similarity=0.055 Sum_probs=34.5
Q ss_pred ccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhccccccccccCCCcc
Q psy3426 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIP 285 (360)
Q Consensus 238 ~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ghIpgA~~i~~~~~~ 285 (360)
.-+++++.+.+ ......+|+|....|..+||||++++|...+.
T Consensus 15 i~~~~~~~~~l-----~~~~~~~d~rg~i~~a~egIngtis~~~~~~~ 57 (314)
T PRK00142 15 IEDPEAFRDEH-----LALCKSLGLKGRILVAEEGINGTVSGTIEQTE 57 (314)
T ss_pred CCCHHHHHHHH-----HHHHHHcCCeeEEEEcCCCceEEEEecHHHHH
Confidence 44677787776 23467899999999999999999999986453
No 86
>TIGR01244 conserved hypothetical protein TIGR01244. No member of this family is characterized. The member from Xylella fastidiosa is a longer protein with an N-terminal region described by this model, followed by a metallo-beta-lactamase family domain and an additional C-terminal region. Members scoring above the trusted cutoff are limited to the proteobacteria.
Probab=92.82 E-value=0.39 Score=38.23 Aligned_cols=88 Identities=14% Similarity=0.100 Sum_probs=47.5
Q ss_pred cccCHHHHHHHhhhcCCCCCEEEEEcCCccchhhcc----------cccc--ccccCCCcccCccCCCCCCCCChhhhhH
Q psy3426 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAES----------IIGS--INIPLARIPDLESTDLGSMESSPEMNIL 304 (360)
Q Consensus 237 ~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~gh----------IpgA--~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (360)
+.++++++..+. +.+=-.|||.|++.|-.... -+|. +++|...-. ...... ......+
T Consensus 13 ~qlt~~d~~~L~----~~GiktVIdlR~~~E~~~~p~~~~~~~~a~~~gl~y~~iPv~~~~----~~~~~v--~~f~~~~ 82 (135)
T TIGR01244 13 PQLTKADAAQAA----QLGFKTVINNRPDREEESQPDFAQIKAAAEAAGVTYHHQPVTAGD----ITPDDV--ETFRAAI 82 (135)
T ss_pred CCCCHHHHHHHH----HCCCcEEEECCCCCCCCCCCCHHHHHHHHHHCCCeEEEeecCCCC----CCHHHH--HHHHHHH
Confidence 578899988765 23334799999986632210 1232 344433111 000010 0112233
Q ss_pred HhcCCCeEEEEcCCCchhHHHHHHHH-HHcCCC
Q psy3426 305 FNNKGSIIVIVGGEDSMRQAKFARFI-VRLGFP 336 (360)
Q Consensus 305 ~~~~~~~iv~~c~~g~~~s~~~~~~L-~~~G~~ 336 (360)
. ..+++|+++|.+|. |+..++..+ ...|.+
T Consensus 83 ~-~~~~pvL~HC~sG~-Rt~~l~al~~~~~g~~ 113 (135)
T TIGR01244 83 G-AAEGPVLAYCRSGT-RSSLLWGFRQAAEGVP 113 (135)
T ss_pred H-hCCCCEEEEcCCCh-HHHHHHHHHHHHcCCC
Confidence 3 34679999999999 888765443 334654
No 87
>KOG2224|consensus
Probab=92.41 E-value=0.048 Score=50.53 Aligned_cols=34 Identities=26% Similarity=0.475 Sum_probs=30.8
Q ss_pred CcccCChhHHHHHHHHHhcCChhHHHHHHHHHHHh
Q psy3426 42 FVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPK 76 (360)
Q Consensus 42 i~Y~QGm~~i~~~ll~~~~~~e~~~f~~~~~l~~~ 76 (360)
+|..|||.++++|+|.-. -||.++||||+.+|++
T Consensus 566 vglmqgmsdlvapilaev-ldesdtfwcfvglmqn 599 (781)
T KOG2224|consen 566 VGLMQGMSDLVAPILAEV-LDESDTFWCFVGLMQN 599 (781)
T ss_pred hhhhccchhhhhhHHHhh-hccccchhhhhhhhcc
Confidence 678899999999999877 5899999999999975
No 88
>PF04273 DUF442: Putative phosphatase (DUF442); InterPro: IPR005939 Although this domain is uncharacterised it seems likely that it performs a phosphatase function.; GO: 0016787 hydrolase activity; PDB: 2F46_A 3GXH_B 3GXG_B.
Probab=91.87 E-value=0.43 Score=36.44 Aligned_cols=80 Identities=16% Similarity=0.124 Sum_probs=36.4
Q ss_pred ccccCHHHHHHHhhhcCCCCCEEEEEcCCccchhh-c------ccc-----ccccccCCCcccCccCCCCCCCCChhhhh
Q psy3426 236 CSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVA-E------SII-----GSINIPLARIPDLESTDLGSMESSPEMNI 303 (360)
Q Consensus 236 ~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~-g------hIp-----gA~~i~~~~~~~~~~~~~~~~~~~~~~~~ 303 (360)
.+.++++++..+. +.+=-.||+.|+..|=.. . ..- .-+++|...-. ....... ...+.
T Consensus 12 s~Q~~~~d~~~la----~~GfktVInlRpd~E~~~qp~~~~~~~~a~~~Gl~y~~iPv~~~~----~~~~~v~--~f~~~ 81 (110)
T PF04273_consen 12 SGQPSPEDLAQLA----AQGFKTVINLRPDGEEPGQPSSAEEAAAAEALGLQYVHIPVDGGA----ITEEDVE--AFADA 81 (110)
T ss_dssp ECS--HHHHHHHH----HCT--EEEE-S-TTSTTT-T-HHCHHHHHHHCT-EEEE----TTT------HHHHH--HHHHH
T ss_pred CCCCCHHHHHHHH----HCCCcEEEECCCCCCCCCCCCHHHHHHHHHHcCCeEEEeecCCCC----CCHHHHH--HHHHH
Confidence 3578999999877 333336999998755211 0 000 13455654211 0011110 11223
Q ss_pred HHhcCCCeEEEEcCCCchhHHHHH
Q psy3426 304 LFNNKGSIIVIVGGEDSMRQAKFA 327 (360)
Q Consensus 304 ~~~~~~~~iv~~c~~g~~~s~~~~ 327 (360)
+.. .+++|.+||.+|. |+...+
T Consensus 82 l~~-~~~Pvl~hC~sG~-Ra~~l~ 103 (110)
T PF04273_consen 82 LES-LPKPVLAHCRSGT-RASALW 103 (110)
T ss_dssp HHT-TTTSEEEE-SCSH-HHHHHH
T ss_pred HHh-CCCCEEEECCCCh-hHHHHH
Confidence 333 3679999999999 887444
No 89
>PF13350 Y_phosphatase3: Tyrosine phosphatase family; PDB: 1YWF_A 2OZ5_B.
Probab=82.38 E-value=2.4 Score=34.84 Aligned_cols=36 Identities=28% Similarity=0.180 Sum_probs=19.5
Q ss_pred hhcccccccCHHHHHHHhhhcCCCCCEEEEEcCCccchhh
Q psy3426 231 ALSEFCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVA 270 (360)
Q Consensus 231 ~~~~~~~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~ 270 (360)
+++.....+|+++...+. +-.=-.|||.|++.|...
T Consensus 22 yRS~~l~~lt~~d~~~L~----~lgI~tIiDLRs~~E~~~ 57 (164)
T PF13350_consen 22 YRSGNLSNLTEADLERLR----ELGIRTIIDLRSPTERER 57 (164)
T ss_dssp EEES--TT--HHHHHHHH----HTT--EEEE-S-HHHHHH
T ss_pred EecCCcCcCCHHHHHHHH----hCCCCEEEECCCcccccc
Confidence 445556788899887665 222247999999988765
No 90
>TIGR03167 tRNA_sel_U_synt tRNA 2-selenouridine synthase. The Escherichia coli YbbB protein was shown to encode a selenophosphate-dependent tRNA 2-selenouridine synthase, essential for modification of some tRNAs to replace a sulfur atom with selenium. This enzyme works with SelD, the selenium donor protein, which also acts in selenocysteine incorporation. Although the members of this protein family show a fairly deep split, sequences from both sides of the split are supported by co-occurence with, and often proximity to, the selD gene.
Probab=72.32 E-value=3 Score=38.24 Aligned_cols=34 Identities=15% Similarity=0.204 Sum_probs=28.9
Q ss_pred cccCHHHHHHHhhhcCCCCCEEEEEcCCccchhh---cccc
Q psy3426 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVA---ESII 274 (360)
Q Consensus 237 ~~is~~~l~~~~~~~~~~~~~~iiDvR~~~e~~~---ghIp 274 (360)
..++.+++...+ ...++.+||+|+..+|.+ ||||
T Consensus 136 tg~gKt~Ll~~L----~~~~~~VvDlr~~a~hrGs~fG~~~ 172 (311)
T TIGR03167 136 TGSGKTELLHAL----ANAGAQVLDLEGLANHRGSSFGALG 172 (311)
T ss_pred CCcCHHHHHHHH----hcCCCeEEECCchHHhcCcccCCCC
Confidence 467888898888 556788999999999998 8888
No 91
>PF01451 LMWPc: Low molecular weight phosphotyrosine protein phosphatase; InterPro: IPR023485 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents the low molecular weight (LMW) protein-tyrosine phosphatases (or acid phosphatase), which act on tyrosine phosphorylated proteins, low-MW aryl phosphates and natural and synthetic acyl phosphates [, ]. The structure of a LMW PTPase has been solved by X-ray crystallography [] and is found to form a single structural domain. It belongs to the alpha/beta class, with 6 alpha-helices and 4 beta-strands forming a 3-layer alpha-beta-alpha sandwich architecture.; PDB: 3RH0_B 1JL3_B 2IPA_B 1Z2D_A 1Z2E_A 2CWD_D 2L18_A 2L17_A 2L19_A 1BVH_A ....
Probab=69.07 E-value=7.3 Score=30.77 Aligned_cols=37 Identities=11% Similarity=0.061 Sum_probs=30.3
Q ss_pred EEEEcCCCchhHHHHHHHHHHc----CCCcEEEeccccccc
Q psy3426 312 IVIVGGEDSMRQAKFARFIVRL----GFPKVTYVHEHVNSF 348 (360)
Q Consensus 312 iv~~c~~g~~~s~~~~~~L~~~----G~~~v~~l~GG~~~w 348 (360)
|+|+|.+...||..|...+++. +-.++.+...|..+|
T Consensus 1 ILFvC~~N~cRS~mAEai~~~~~~~~~~~~~~v~SAG~~~~ 41 (138)
T PF01451_consen 1 ILFVCTGNICRSPMAEAILRHLLKQRLGDRFEVESAGTEAW 41 (138)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHHHHTHTTTEEEEEEESSST
T ss_pred CEEEeCCCcchHHHHHHHHHHhccccccCCcEEEEEeeccc
Confidence 6789998777888877777776 667899999999877
No 92
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=67.08 E-value=9.8 Score=30.05 Aligned_cols=38 Identities=21% Similarity=0.366 Sum_probs=30.2
Q ss_pred HHhcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecc
Q psy3426 304 LFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHE 343 (360)
Q Consensus 304 ~~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~G 343 (360)
+...+++++++++.+|. +..++..|...|.+++++..-
T Consensus 7 ~~~l~~~~vlviGaGg~--ar~v~~~L~~~g~~~i~i~nR 44 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGA--ARAVAAALAALGAKEITIVNR 44 (135)
T ss_dssp HSTGTTSEEEEESSSHH--HHHHHHHHHHTTSSEEEEEES
T ss_pred cCCcCCCEEEEECCHHH--HHHHHHHHHHcCCCEEEEEEC
Confidence 33456889999988665 888999999999999987653
No 93
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=64.50 E-value=8.9 Score=30.07 Aligned_cols=28 Identities=25% Similarity=0.366 Sum_probs=18.7
Q ss_pred CCCeEEEEcCCCchhHHHH--HHHHHHcCC
Q psy3426 308 KGSIIVIVGGEDSMRQAKF--ARFIVRLGF 335 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~~--~~~L~~~G~ 335 (360)
.+++|+|+|..|.+|+..+ ++.+...|.
T Consensus 80 ~~~~vlVHC~~G~~Rs~~~~~~~l~~~~~~ 109 (139)
T cd00127 80 KGGKVLVHCLAGVSRSATLVIAYLMKTLGL 109 (139)
T ss_pred cCCcEEEECCCCCchhHHHHHHHHHHHcCC
Confidence 4679999999997666643 344444454
No 94
>smart00226 LMWPc Low molecular weight phosphatase family.
Probab=61.80 E-value=13 Score=29.47 Aligned_cols=37 Identities=11% Similarity=0.066 Sum_probs=29.1
Q ss_pred EEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccccc
Q psy3426 312 IVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSF 348 (360)
Q Consensus 312 iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w 348 (360)
|+|+|.+...||..|...|++..-.++.+...|..+|
T Consensus 1 vLFVC~~N~cRSpmAEa~~~~~~~~~~~v~SAG~~~~ 37 (140)
T smart00226 1 ILFVCTGNICRSPMAEALFKAIVGDRVKIDSAGTGAW 37 (140)
T ss_pred CEEEeCChhhhHHHHHHHHHHhcCCCEEEEcCcccCC
Confidence 5788887777899888888776544688888888877
No 95
>PRK11391 etp phosphotyrosine-protein phosphatase; Provisional
Probab=58.67 E-value=20 Score=28.70 Aligned_cols=39 Identities=15% Similarity=0.069 Sum_probs=29.9
Q ss_pred CeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccc
Q psy3426 310 SIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFE 349 (360)
Q Consensus 310 ~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~ 349 (360)
+.|+|+|.+..+||..|...+++.+- ++.+...|..+|.
T Consensus 3 ~~ILfVC~gN~cRSpmAEa~~~~~~~-~~~v~SaG~~~~~ 41 (144)
T PRK11391 3 NSILVVCTGNICRSPIGERLLRKRLP-GVKVKSAGVHGLV 41 (144)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEcccccCCC
Confidence 46999998877799988888876643 4777888887763
No 96
>TIGR02689 ars_reduc_gluta arsenate reductase, glutathione/glutaredoxin type. Members of this protein family represent a novel form of arsenate reductase, using glutathione and glutaredoxin rather than thioredoxin for reducing equivalents as do some homologous arsenate reductases. An example of this type is Synechocystis sp. strain PCC 6803 slr0946, and of latter type (excluded from this model) is Staphylococcus aureus plasmid pI258 ArsC. Both are among the subset of arsenate reductases that belong the the low-molecular-weight protein-tyrosine phosphatase superfamily.
Probab=58.28 E-value=21 Score=27.72 Aligned_cols=36 Identities=17% Similarity=0.217 Sum_probs=27.7
Q ss_pred eEEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccc
Q psy3426 311 IIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVN 346 (360)
Q Consensus 311 ~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~ 346 (360)
.|+|+|.+...||..|...+++.+-.++.+...|..
T Consensus 2 ~vlfvC~~N~cRS~mAEa~~~~~~~~~~~v~SAG~~ 37 (126)
T TIGR02689 2 KVMFVCKRNSCRSQMAEGFAKTLGAGNIAVTSAGLE 37 (126)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHhcCCCEEEEcCcCC
Confidence 588999877768888888888776566777777764
No 97
>PRK10126 tyrosine phosphatase; Provisional
Probab=57.37 E-value=21 Score=28.62 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=30.3
Q ss_pred CeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccc
Q psy3426 310 SIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFE 349 (360)
Q Consensus 310 ~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~ 349 (360)
+.|+|+|.+..+||..|...+++.+- .+.+...|..+|.
T Consensus 3 ~~iLFVC~gN~cRSpmAEa~~~~~~~-~~~v~SAG~~~~~ 41 (147)
T PRK10126 3 NNILVVCVGNICRSPTAERLLQRYHP-ELKVESAGLGALV 41 (147)
T ss_pred CeEEEEcCCcHhHHHHHHHHHHHhcC-CeEEEeeeccCCC
Confidence 46999999887799988888887753 4777788887663
No 98
>PF10815 ComZ: ComZ; InterPro: IPR024558 ComZ, which contains a leucine zipper motif, negatively regulates transcription of the ComG operon [].
Probab=55.55 E-value=24 Score=22.74 Aligned_cols=41 Identities=7% Similarity=0.126 Sum_probs=34.9
Q ss_pred HHHHHHHHHcHHHHHHHHhcCCCCccchHHHHHHHhcccCC
Q psy3426 96 KFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLP 136 (360)
Q Consensus 96 ~~~~lL~~~dp~L~~hL~~~~~~~~~~~~~W~~~lF~~~l~ 136 (360)
.|..+-.++.|+--..|++.||..+.-.+.=+++||.+..+
T Consensus 5 ~FmqIaMK~lPEak~~L~k~GIeLsme~~qP~m~L~~~VM~ 45 (56)
T PF10815_consen 5 EFMQIAMKYLPEAKEELDKKGIELSMEMLQPLMQLLTKVMN 45 (56)
T ss_pred HHHHHHHHHhHHHHHHHHHcCccCCHHHHHHHHHHHHHHHH
Confidence 46677888999999999999999998888888999887654
No 99
>PRK08384 thiamine biosynthesis protein ThiI; Provisional
Probab=51.82 E-value=46 Score=31.56 Aligned_cols=115 Identities=6% Similarity=0.115 Sum_probs=64.1
Q ss_pred CCCHHHHHHHHHHhHhhC-------CCccccccccccchhhhhhhhhhhhhhhcccccccCHH-HHHHHhhhcCCCCC-E
Q psy3426 187 EVDIEQSVTDSIDIYCVT-------PRSITFRMHESESTLLEGALLQRHNQALSEFCSSLSST-DLLDLINTRFKKPK-V 257 (360)
Q Consensus 187 ~~d~~~li~~A~~l~~~~-------P~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~-~l~~~~~~~~~~~~-~ 257 (360)
+.|++++...|..+++.. ..+|..+-.|..-.++. ++.|+.+.....|-.. ++.--+ .+++ .
T Consensus 82 ~~~~~~i~~~~~~~~~~~~~~~~~~~~tF~V~~rR~~k~f~~-----tS~ei~~~vG~~i~~~~~~~Vdl----~~Pd~~ 152 (381)
T PRK08384 82 DAELEKINRTALKLFRRKKRELELEKPRFRVTARRITKEFPL-----KSPEIQAKVGEYILENEESEVDL----HNYDIE 152 (381)
T ss_pred CCCHHHHHHHHHHHHHHhhhcccccCCeEEEEEEeCCCCCCC-----ChHHHHHHHHHHHHhcCCCCccC----cCCCEE
Confidence 358899999998888764 24677776666542221 1223322221111000 011012 2343 4
Q ss_pred EEEEcCCccchhh-ccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCCCchhHHHHHHHHHHcCCC
Q psy3426 258 LVIDIRDNEEYVA-ESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFP 336 (360)
Q Consensus 258 ~iiDvR~~~e~~~-ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~ 336 (360)
+-|++|....|-- ..+||.=-+|... ...+++.-++|. .|..|++.|.+.|++
T Consensus 153 i~vEir~~~ayv~~~~~~G~GGLPvGs-------------------------~gkvlvllSGGi-DSpVAa~ll~krG~~ 206 (381)
T PRK08384 153 VGVELMEGKAYVFVDKVKAWGGLPIGT-------------------------QGKVVALLSGGI-DSPVAAFLMMKRGVE 206 (381)
T ss_pred EEEEEEeCeEEEEEEEeecCCCCccCC-------------------------CCcEEEEEeCCh-HHHHHHHHHHHcCCe
Confidence 6899998766643 3456655555552 224555556666 788888888888885
No 100
>PRK13530 arsenate reductase; Provisional
Probab=51.68 E-value=33 Score=27.02 Aligned_cols=37 Identities=11% Similarity=-0.045 Sum_probs=28.0
Q ss_pred CeEEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccc
Q psy3426 310 SIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVN 346 (360)
Q Consensus 310 ~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~ 346 (360)
+.|+|+|.+...||..|...+.+.+-.++.+...|..
T Consensus 4 ~~vLFvC~~N~cRS~mAEal~~~~~~~~~~v~SAG~~ 40 (133)
T PRK13530 4 KTIYFLCTGNSCRSQMAEGWGKQYLGDKWNVYSAGIE 40 (133)
T ss_pred CEEEEEcCCchhHHHHHHHHHHHhcCCCEEEECCCCC
Confidence 4789999887768888887777664456777788864
No 101
>COG0394 Wzb Protein-tyrosine-phosphatase [Signal transduction mechanisms]
Probab=49.47 E-value=33 Score=27.35 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=30.4
Q ss_pred CeEEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccccc
Q psy3426 310 SIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSF 348 (360)
Q Consensus 310 ~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w 348 (360)
..|+|+|.+..+||..|-..+++..-.++.+...|..++
T Consensus 3 ~kVLFVC~gN~cRSpmAE~l~~~~~~~~~~v~SAGt~~~ 41 (139)
T COG0394 3 MKVLFVCTGNICRSPMAEALLRHLAPDNVEVDSAGTGGH 41 (139)
T ss_pred ceEEEEcCCCcccCHHHHHHHHHhccCCeEEECCccCCC
Confidence 478999998877888877777766447888988887553
No 102
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=49.32 E-value=26 Score=27.42 Aligned_cols=42 Identities=19% Similarity=0.329 Sum_probs=31.4
Q ss_pred CCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccccCc
Q psy3426 309 GSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYG 352 (360)
Q Consensus 309 ~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~~g 352 (360)
+++|++.+.++. ...++..|.+.|..++.+++++.-...+-+
T Consensus 2 ~~~v~iiG~G~v--Gs~va~~L~~~Gv~~i~lvD~d~v~~~nl~ 43 (135)
T PF00899_consen 2 NKRVLIIGAGGV--GSEVAKNLARSGVGKITLVDDDIVEPSNLN 43 (135)
T ss_dssp T-EEEEESTSHH--HHHHHHHHHHHTTSEEEEEESSBB-GGGCC
T ss_pred CCEEEEECcCHH--HHHHHHHHHHhCCCceeecCCcceeecccc
Confidence 456777766665 788999999999999999999876654433
No 103
>cd00115 LMWPc Substituted updates: Aug 22, 2001
Probab=48.05 E-value=28 Score=27.56 Aligned_cols=38 Identities=8% Similarity=0.065 Sum_probs=29.2
Q ss_pred eEEEEcCCCchhHHHHHHHHHHcCCC-cEEEeccccccc
Q psy3426 311 IIVIVGGEDSMRQAKFARFIVRLGFP-KVTYVHEHVNSF 348 (360)
Q Consensus 311 ~iv~~c~~g~~~s~~~~~~L~~~G~~-~v~~l~GG~~~w 348 (360)
.|+|+|.+...||..|...+.+..-+ ++.+..+|...+
T Consensus 2 ~iLfvc~~N~~RS~mAEai~~~~~~~~~~~v~SaG~~~~ 40 (141)
T cd00115 2 KVLFVCTGNICRSPMAEAIFRHLAPKLDIEVDSAGTSGW 40 (141)
T ss_pred eEEEEecChhhhhHHHHHHHHHHhhhCCEEEECCCCCCc
Confidence 58899988776888888777766443 788888888765
No 104
>PF09992 DUF2233: Predicted periplasmic protein (DUF2233); InterPro: IPR018711 This entry contains proteins that catalyze the second step in the formation of the mannose 6-phosphate targeting signal on lysosomal enzyme oligosaccharides, this is achieved by removing GlcNAc residues from GlcNAc-alpha-P-mannose moieties, which are formed in the first step.; PDB: 3OHG_A.
Probab=47.61 E-value=25 Score=28.81 Aligned_cols=28 Identities=14% Similarity=0.157 Sum_probs=18.3
Q ss_pred CchhHHHHHHHHHHcCCCcEEEecccccc
Q psy3426 319 DSMRQAKFARFIVRLGFPKVTYVHEHVNS 347 (360)
Q Consensus 319 g~~~s~~~~~~L~~~G~~~v~~l~GG~~~ 347 (360)
|. ....++..|++.|..+...|+||-..
T Consensus 115 g~-tl~ela~~l~~lG~~~AinLDGGgSs 142 (170)
T PF09992_consen 115 GM-TLDELAQLLKSLGCVDAINLDGGGSS 142 (170)
T ss_dssp -B--HHHHHHHHHHHT-SEEEE---GGG-
T ss_pred CC-CHHHHHHHHHHcCcCeEEEecCCcce
Confidence 45 77889999999999999999998553
No 105
>PRK01565 thiamine biosynthesis protein ThiI; Provisional
Probab=46.18 E-value=1.1e+02 Score=29.05 Aligned_cols=115 Identities=14% Similarity=0.233 Sum_probs=61.3
Q ss_pred CCCHHHHHHHHHHhHhhC---CCccccccccccchhhhhhhhhhhhhhhcccccccCHH--HH-HHHhhhcCCCCCEEEE
Q psy3426 187 EVDIEQSVTDSIDIYCVT---PRSITFRMHESESTLLEGALLQRHNQALSEFCSSLSST--DL-LDLINTRFKKPKVLVI 260 (360)
Q Consensus 187 ~~d~~~li~~A~~l~~~~---P~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~--~l-~~~~~~~~~~~~~~ii 260 (360)
+-|++++.+.|..++... ..+|..+-.+....++. ++.++.+.....|-.. ++ .++- +.+-.+-|
T Consensus 81 ~~~~e~I~~~~~~~~~~~~~~~~tF~Vr~rR~~k~f~~-----tS~ei~r~vG~~I~~~~~~~~VdL~----nPd~~i~v 151 (394)
T PRK01565 81 EKDLEAIKEAALELLKEVYKEGKTFKVEARRSDKSFPL-----DSMELNRELGAYILENFPNLKVDVK----NPDVTLRV 151 (394)
T ss_pred CCCHHHHHHHHHHHHHhhccCCCcEEEEEEECCCCCCC-----ChHHHHHHHHHHHHhhCCCCccccc----CCCeEEEE
Confidence 357888888888887653 45777776776543211 1122222211111000 01 1111 23345688
Q ss_pred EcCCccchhh-ccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCCCchhHHHHHHHHHHcCCC
Q psy3426 261 DIRDNEEYVA-ESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFP 336 (360)
Q Consensus 261 DvR~~~e~~~-ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~ 336 (360)
++|...-|-- ..+||.=-+|... +..+++..++|. .|..+++.+.+.|++
T Consensus 152 ei~~~~ayv~~~~~~g~GGlP~g~-------------------------~gkvvvllSGGi-DS~vaa~l~~k~G~~ 202 (394)
T PRK01565 152 EVRKEAAYVYTEKIPGAGGLPVGT-------------------------SGKALLLLSGGI-DSPVAGYLAMKRGVE 202 (394)
T ss_pred EEEcCeEEEEEEEEecCCCCccCC-------------------------CCCEEEEECCCh-hHHHHHHHHHHCCCE
Confidence 9988766543 3456666666552 224555566666 677777776667763
No 106
>COG3453 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=44.18 E-value=58 Score=25.23 Aligned_cols=21 Identities=5% Similarity=0.061 Sum_probs=16.7
Q ss_pred CCCeEEEEcCCCchhHHHHHHH
Q psy3426 308 KGSIIVIVGGEDSMRQAKFARF 329 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~~~~~ 329 (360)
.+.+|..||.+|. |+..++..
T Consensus 86 aegPVlayCrsGt-Rs~~ly~~ 106 (130)
T COG3453 86 AEGPVLAYCRSGT-RSLNLYGL 106 (130)
T ss_pred hCCCEEeeecCCc-hHHHHHHH
Confidence 3669999999999 88865543
No 107
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=42.12 E-value=35 Score=32.21 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=33.3
Q ss_pred cCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccccccc
Q psy3426 307 NKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 307 ~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~ 350 (360)
.++++|++++.+|. +..++..|...|..++.+++++.-.+.+
T Consensus 133 l~~~~VlvvG~GG~--Gs~ia~~La~~Gvg~i~lvD~d~v~~sN 174 (376)
T PRK08762 133 LLEARVLLIGAGGL--GSPAALYLAAAGVGTLGIVDHDVVDRSN 174 (376)
T ss_pred HhcCcEEEECCCHH--HHHHHHHHHHcCCCeEEEEeCCEecchh
Confidence 35677888866655 7889999999999999999998655544
No 108
>TIGR02691 arsC_pI258_fam arsenate reductase (thioredoxin). This family describes the well-studied thioredoxin-dependent arsenate reductase of Staphylococcus aureaus plasmid pI258 and other mechanistically similar arsenate reductases. The mechanism involves an intramolecular disulfide bond cascade, and aligned members of this family have four absolutely conserved Cys residues. This group of arsenate reductases belongs to the low-molecular weight protein-tyrosine phosphatase family (pfam01451), as does a group of glutathione/glutaredoxin type arsenate reductases (TIGR02689). At least two other, non-homologous groups of arsenate reductases involved in arsenical resistance are also known. This enzyme reduces arsenate to arsenite, which may be more toxic but which is more easily exported.
Probab=41.87 E-value=42 Score=26.27 Aligned_cols=35 Identities=9% Similarity=-0.056 Sum_probs=23.2
Q ss_pred EEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccc
Q psy3426 312 IVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVN 346 (360)
Q Consensus 312 iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~ 346 (360)
|+|+|.+...||..|...+.+.+-.++.+..+|..
T Consensus 1 iLFvC~~N~~RS~mAea~~~~~~~~~~~v~SaG~~ 35 (129)
T TIGR02691 1 IYFLCTGNSCRSQMAEGWGKKYLGDEWEVYSAGIE 35 (129)
T ss_pred CEEEcCCchHHHHHHHHHHHHhcCCCEEEEcCCCC
Confidence 46777766657777776666653356777777764
No 109
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=40.89 E-value=20 Score=19.33 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=10.2
Q ss_pred CcccCChhHHHHHH
Q psy3426 42 FVYWQGLDSLCAPF 55 (360)
Q Consensus 42 i~Y~QGm~~i~~~l 55 (360)
-||+||+.+...-.
T Consensus 3 sgyiqgipdflkgy 16 (31)
T PF08109_consen 3 SGYIQGIPDFLKGY 16 (31)
T ss_pred cccccccHHHHHHH
Confidence 47999998776543
No 110
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=40.60 E-value=57 Score=25.70 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=28.6
Q ss_pred CCeEEEEcCCCc---hhHHHHHHHHHHcCCCcEEEeccc------ccccccCcc
Q psy3426 309 GSIIVIVGGEDS---MRQAKFARFIVRLGFPKVTYVHEH------VNSFECYGV 353 (360)
Q Consensus 309 ~~~iv~~c~~g~---~~s~~~~~~L~~~G~~~v~~l~GG------~~~w~~~gl 353 (360)
+..+|.+|.... .....+...|++.|..++.++.|| +..|++.|.
T Consensus 53 ~adii~iSsl~~~~~~~~~~~~~~L~~~g~~~i~vivGG~~~~~~~~~l~~~Gv 106 (132)
T TIGR00640 53 DVHVVGVSSLAGGHLTLVPALRKELDKLGRPDILVVVGGVIPPQDFDELKEMGV 106 (132)
T ss_pred CCCEEEEcCchhhhHHHHHHHHHHHHhcCCCCCEEEEeCCCChHhHHHHHHCCC
Confidence 445677776443 245567777777787777778887 334555664
No 111
>KOG0685|consensus
Probab=40.19 E-value=44 Score=32.35 Aligned_cols=35 Identities=23% Similarity=0.263 Sum_probs=27.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEeccc
Q psy3426 308 KGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEH 344 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG 344 (360)
.+..||+++.+-. ...||..|.+.|+.++.+++|+
T Consensus 20 ~~~kIvIIGAG~A--GLaAA~rLle~gf~~~~IlEa~ 54 (498)
T KOG0685|consen 20 GNAKIVIIGAGIA--GLAAATRLLENGFIDVLILEAS 54 (498)
T ss_pred CCceEEEECCchH--HHHHHHHHHHhCCceEEEEEec
Confidence 3457888876544 7788899999999999999875
No 112
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=40.18 E-value=29 Score=32.29 Aligned_cols=42 Identities=10% Similarity=0.031 Sum_probs=30.8
Q ss_pred ccccccCHHHHHHHhhhc--CCCCCEEEEEcCCccchhhcccccc
Q psy3426 234 EFCSSLSSTDLLDLINTR--FKKPKVLVIDIRDNEEYVAESIIGS 276 (360)
Q Consensus 234 ~~~~~is~~~l~~~~~~~--~~~~~~~iiDvR~~~e~~~ghIpgA 276 (360)
.....++++++.+.+++. .-+.+..+||+|++. |+-.++|+-
T Consensus 274 ~~~~~i~~~~~~~~l~~~~~~~~~~~~ll~vr~~~-~~~~~~~~g 317 (339)
T PRK07688 274 PHKEEYDLEELAELLRDRGLDVNVNPYLLSFSLEE-KRLVLFKDG 317 (339)
T ss_pred CCcCccCHHHHHHHHHhcccccCCCcEEEEEecCC-eEEEEEcCC
Confidence 345689999999887322 124578999999987 888888753
No 113
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=40.01 E-value=52 Score=28.96 Aligned_cols=38 Identities=18% Similarity=0.180 Sum_probs=31.3
Q ss_pred hHHhcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEec
Q psy3426 303 ILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVH 342 (360)
Q Consensus 303 ~~~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~ 342 (360)
.+.+.+..+|++++-+|. ...++..|.+.|..++.+++
T Consensus 24 ~lekl~~~~V~VvGiGGV--GSw~veALaRsGig~itlID 61 (263)
T COG1179 24 GLEKLKQAHVCVVGIGGV--GSWAVEALARSGIGRITLID 61 (263)
T ss_pred HHHHHhhCcEEEEecCch--hHHHHHHHHHcCCCeEEEEe
Confidence 455556789999888887 78899999999999888765
No 114
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=39.41 E-value=46 Score=30.12 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=26.8
Q ss_pred CCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecc
Q psy3426 309 GSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHE 343 (360)
Q Consensus 309 ~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~G 343 (360)
++++++++.+|. |..++..|.+.|..++.++.-
T Consensus 126 ~~~vlilGAGGA--arAv~~aL~~~g~~~i~V~NR 158 (283)
T COG0169 126 GKRVLILGAGGA--ARAVAFALAEAGAKRITVVNR 158 (283)
T ss_pred CCEEEEECCcHH--HHHHHHHHHHcCCCEEEEEeC
Confidence 567888877776 888999999999988887653
No 115
>smart00195 DSPc Dual specificity phosphatase, catalytic domain.
Probab=38.35 E-value=49 Score=25.83 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=20.2
Q ss_pred CCCeEEEEcCCCchhHHH--HHHHHHHcCCC
Q psy3426 308 KGSIIVIVGGEDSMRQAK--FARFIVRLGFP 336 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~--~~~~L~~~G~~ 336 (360)
.+++|+|+|..|..|+.. +++.+...|++
T Consensus 77 ~~~~VlVHC~~G~~RS~~v~~~yl~~~~~~~ 107 (138)
T smart00195 77 KGGKVLVHCQAGVSRSATLIIAYLMKYRNLS 107 (138)
T ss_pred CCCeEEEECCCCCchHHHHHHHHHHHHhCCC
Confidence 577999999999756654 44445556764
No 116
>COG2453 CDC14 Predicted protein-tyrosine phosphatase [Signal transduction mechanisms]
Probab=37.50 E-value=43 Score=27.91 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=19.0
Q ss_pred CCCeEEEEcCCCchhHHH--HHHHHHHcCC
Q psy3426 308 KGSIIVIVGGEDSMRQAK--FARFIVRLGF 335 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~--~~~~L~~~G~ 335 (360)
+++.|+|+|..|.+|+.. +|+.+...|.
T Consensus 104 ~g~kVvVHC~~GigRSgtviaA~lm~~~~~ 133 (180)
T COG2453 104 KGKKVVVHCQGGIGRSGTVIAAYLMLYGGL 133 (180)
T ss_pred cCCeEEEEcCCCCchHHHHHHHHHHHHcCC
Confidence 566999999999876653 3345555344
No 117
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=35.55 E-value=66 Score=28.41 Aligned_cols=31 Identities=23% Similarity=0.353 Sum_probs=24.0
Q ss_pred CeEEEEcCCCc--hhHHHHHHHHHHcCCCcEEEe
Q psy3426 310 SIIVIVGGEDS--MRQAKFARFIVRLGFPKVTYV 341 (360)
Q Consensus 310 ~~iv~~c~~g~--~~s~~~~~~L~~~G~~~v~~l 341 (360)
++|+++|..|+ +.+-.+|+.|...|++ |.++
T Consensus 61 ~~V~VlcG~GNNGGDGlv~AR~L~~~G~~-V~v~ 93 (246)
T PLN03050 61 PRVLLVCGPGNNGGDGLVAARHLAHFGYE-VTVC 93 (246)
T ss_pred CeEEEEECCCCCchhHHHHHHHHHHCCCe-EEEE
Confidence 57888888665 2788999999999995 5544
No 118
>PLN02727 NAD kinase
Probab=35.54 E-value=1.1e+02 Score=32.49 Aligned_cols=86 Identities=15% Similarity=0.123 Sum_probs=47.5
Q ss_pred ccccccCHHHHHHHhhhcCCCCCE-EEEEcCCccchhhccc------------cccccccCCCcccCccCCCCCCCCC-h
Q psy3426 234 EFCSSLSSTDLLDLINTRFKKPKV-LVIDIRDNEEYVAESI------------IGSINIPLARIPDLESTDLGSMESS-P 299 (360)
Q Consensus 234 ~~~~~is~~~l~~~~~~~~~~~~~-~iiDvR~~~e~~~ghI------------pgA~~i~~~~~~~~~~~~~~~~~~~-~ 299 (360)
.....++++++..+. + .++ .||+.|+..|- .+.- =.-+++|...-. ....+.. .
T Consensus 264 ~rsgQpspe~la~LA----~-~GfKTIINLRpd~E~-~q~~~~ee~eAae~~GL~yVhIPVs~~~------apt~EqVe~ 331 (986)
T PLN02727 264 WRGGQVTEEGLKWLL----E-KGFKTIVDLRAEIVK-DNFYQAAVDDAISSGKIEVVKIPVEVRT------APSAEQVEK 331 (986)
T ss_pred EEeCCCCHHHHHHHH----H-CCCeEEEECCCCCcC-CCchhHHHHHHHHHcCCeEEEeecCCCC------CCCHHHHHH
Confidence 345789999998876 3 344 69999997662 1111 123466653211 1111111 2
Q ss_pred hhhhHHhcCCCeEEEEcCCCch-hHHHHHHHHH
Q psy3426 300 EMNILFNNKGSIIVIVGGEDSM-RQAKFARFIV 331 (360)
Q Consensus 300 ~~~~~~~~~~~~iv~~c~~g~~-~s~~~~~~L~ 331 (360)
..+.+.....++|+++|.+|.. ....+|.++.
T Consensus 332 fa~~l~~slpkPVLvHCKSGarRAGamvA~yl~ 364 (986)
T PLN02727 332 FASLVSDSSKKPIYLHSKEGVWRTSAMVSRWKQ 364 (986)
T ss_pred HHHHHHhhcCCCEEEECCCCCchHHHHHHHHHH
Confidence 2233323347899999999983 2334444444
No 119
>PF02590 SPOUT_MTase: Predicted SPOUT methyltransferase; InterPro: IPR003742 This family of proteins are predicted to be SPOUT methyltransferases []. ; GO: 0008168 methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1VH0_E 4FAK_A 1TO0_G 1O6D_A 1NS5_B.
Probab=35.03 E-value=67 Score=26.15 Aligned_cols=42 Identities=10% Similarity=0.313 Sum_probs=28.6
Q ss_pred CCCeEEEEcCCCch-hHHHHHHHHHH---cCCCcEEEecccccccc
Q psy3426 308 KGSIIVIVGGEDSM-RQAKFARFIVR---LGFPKVTYVHEHVNSFE 349 (360)
Q Consensus 308 ~~~~iv~~c~~g~~-~s~~~~~~L~~---~G~~~v~~l~GG~~~w~ 349 (360)
++..+|+.+..|.. .|...|..|.+ .|..++..+-||-.|+.
T Consensus 66 ~~~~~i~Ld~~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGG~~G~~ 111 (155)
T PF02590_consen 66 PNDYVILLDERGKQLSSEEFAKKLERWMNQGKSDIVFIIGGADGLS 111 (155)
T ss_dssp TTSEEEEE-TTSEE--HHHHHHHHHHHHHTTS-EEEEEE-BTTB--
T ss_pred CCCEEEEEcCCCccCChHHHHHHHHHHHhcCCceEEEEEecCCCCC
Confidence 56788888888873 77788888866 58889999999976653
No 120
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=34.18 E-value=63 Score=29.20 Aligned_cols=33 Identities=24% Similarity=0.230 Sum_probs=26.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEec
Q psy3426 308 KGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVH 342 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~ 342 (360)
+++++++++.+|. +..++..|.+.|..++++++
T Consensus 126 ~~k~vlilGaGGa--arAi~~aL~~~g~~~i~i~n 158 (283)
T PRK14027 126 KLDSVVQVGAGGV--GNAVAYALVTHGVQKLQVAD 158 (283)
T ss_pred CCCeEEEECCcHH--HHHHHHHHHHCCCCEEEEEc
Confidence 3567888888776 77778888889999888775
No 121
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=33.92 E-value=61 Score=27.82 Aligned_cols=41 Identities=17% Similarity=0.189 Sum_probs=27.2
Q ss_pred eEEEEcCCCchhHHHHHHHHHHcCCCcEEEecc-cccccccCc
Q psy3426 311 IIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHE-HVNSFECYG 352 (360)
Q Consensus 311 ~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~G-G~~~w~~~g 352 (360)
+|+-+-..+. -+..|-..|...|+.||.+..| |..+|.+.+
T Consensus 96 ~V~siEr~~~-L~~~A~~~L~~lg~~nV~v~~gDG~~G~~~~a 137 (209)
T COG2518 96 RVVSIERIEE-LAEQARRNLETLGYENVTVRHGDGSKGWPEEA 137 (209)
T ss_pred eEEEEEEcHH-HHHHHHHHHHHcCCCceEEEECCcccCCCCCC
Confidence 3444333333 4555666789999999887665 888887754
No 122
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=33.71 E-value=61 Score=29.22 Aligned_cols=33 Identities=15% Similarity=0.285 Sum_probs=26.4
Q ss_pred CCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEec
Q psy3426 308 KGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVH 342 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~ 342 (360)
+++++++++.+|. +..++..|.+.|.+++.++.
T Consensus 124 ~~k~vlvlGaGGa--arai~~aL~~~G~~~i~I~n 156 (282)
T TIGR01809 124 AGFRGLVIGAGGT--SRAAVYALASLGVTDITVIN 156 (282)
T ss_pred CCceEEEEcCcHH--HHHHHHHHHHcCCCeEEEEe
Confidence 4667888887666 77788889999999888764
No 123
>cd05567 PTS_IIB_mannitol PTS_IIB_mannitol: subunit IIB of enzyme II (EII) of the mannitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a mannitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIA, IIB, and IIC domains are expressed from the mtlA gene as a single protein, also known as the mannitol PTS permease, the mtl transporter, or MtlA. MtlA is only functional as a dimer with the dimer contacts occuring between the IIC domains. MtlA takes up exogenous mannitol releasing the phosphate ester into the cytoplasm in preparation for oxidation to fructose-6-phosphate by the NAD-dependent mannitol-P dehydrogenase (MtlD). The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include mannitol, chitobiose/lichenan, ascorbate, lactose, galactitol, fructose, and a s
Probab=33.26 E-value=61 Score=23.19 Aligned_cols=21 Identities=19% Similarity=-0.020 Sum_probs=14.3
Q ss_pred eEEEEcCCCchhHHHHHHHHH
Q psy3426 311 IIVIVGGEDSMRQAKFARFIV 331 (360)
Q Consensus 311 ~iv~~c~~g~~~s~~~~~~L~ 331 (360)
+|+++|++|.+.|..++..++
T Consensus 2 kilvvCg~G~gtS~ml~~ki~ 22 (87)
T cd05567 2 KIVFACDAGMGSSAMGASVLR 22 (87)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 689999999855555454443
No 124
>COG4671 Predicted glycosyl transferase [General function prediction only]
Probab=32.99 E-value=66 Score=30.02 Aligned_cols=52 Identities=23% Similarity=0.216 Sum_probs=36.5
Q ss_pred CCCeEEEEcCCCch-----hHHHHHHHHHHc--CCCcEEEeccccc--cccc-CcccCCCCCC
Q psy3426 308 KGSIIVIVGGEDSM-----RQAKFARFIVRL--GFPKVTYVHEHVN--SFEC-YGVLGPGIPS 360 (360)
Q Consensus 308 ~~~~iv~~c~~g~~-----~s~~~~~~L~~~--G~~~v~~l~GG~~--~w~~-~gl~~~~~~~ 360 (360)
+-..|++||..--+ |+.++|..|.+- |++ |.++.||-. ++.. +|....+.|+
T Consensus 8 ~~~Ri~~Yshd~~GlGHlrR~~~Ia~aLv~d~~~~~-Il~IsG~~~~~~F~~~~gVd~V~LPs 69 (400)
T COG4671 8 KRPRILFYSHDLLGLGHLRRALRIAHALVEDYLGFD-ILIISGGPPAGGFPGPAGVDFVKLPS 69 (400)
T ss_pred ccceEEEEehhhccchHHHHHHHHHHHHhhcccCce-EEEEeCCCccCCCCCcccCceEecCc
Confidence 34579999976432 899999999887 885 889999843 4444 5555555553
No 125
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=32.92 E-value=92 Score=26.62 Aligned_cols=34 Identities=18% Similarity=0.247 Sum_probs=26.0
Q ss_pred CCeEEEEcCCCc--hhHHHHHHHHHHcCCCcEEE-ecc
Q psy3426 309 GSIIVIVGGEDS--MRQAKFARFIVRLGFPKVTY-VHE 343 (360)
Q Consensus 309 ~~~iv~~c~~g~--~~s~~~~~~L~~~G~~~v~~-l~G 343 (360)
..+|+++|..|+ +.+-.+|+.|...|++ |.+ +.|
T Consensus 49 ~~~v~vlcG~GnNGGDG~VaAR~L~~~G~~-V~v~~~~ 85 (203)
T COG0062 49 ARRVLVLCGPGNNGGDGLVAARHLKAAGYA-VTVLLLG 85 (203)
T ss_pred CCEEEEEECCCCccHHHHHHHHHHHhCCCc-eEEEEeC
Confidence 457999998876 3788999999999975 443 434
No 126
>TIGR00201 comF comF family protein. This protein is found in species that do (Bacillus subtilis, Haemophilus influenzae) or do not (E. coli, Borrelia burgdorferi) have described systems for natural transformation with exogenous DNA. It is involved in competence for transformation in Bacillus subtilis.
Probab=32.56 E-value=73 Score=26.72 Aligned_cols=33 Identities=27% Similarity=0.426 Sum_probs=26.9
Q ss_pred CCCeEEEEcC---CCchhHHHHHHHHHHcCCCcEEEe
Q psy3426 308 KGSIIVIVGG---EDSMRQAKFARFIVRLGFPKVTYV 341 (360)
Q Consensus 308 ~~~~iv~~c~---~g~~~s~~~~~~L~~~G~~~v~~l 341 (360)
++++|+++++ +|. +...++..|.+.|...|+++
T Consensus 151 ~~~~vllvDDV~TTGa-Tl~~~~~~L~~~Ga~~V~~~ 186 (190)
T TIGR00201 151 QGRNIVLVDDVVTTGA-TLHEIARLLLELGAASVQVW 186 (190)
T ss_pred CCCEEEEEeeeeccHH-HHHHHHHHHHHcCCCEEEEE
Confidence 4678888876 566 78899999999999988865
No 127
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=32.55 E-value=87 Score=24.06 Aligned_cols=43 Identities=12% Similarity=0.103 Sum_probs=26.9
Q ss_pred eEEEEcCCCc---hhHHHHHHHHHHcCCCcEEEeccc------ccccccCcc
Q psy3426 311 IIVIVGGEDS---MRQAKFARFIVRLGFPKVTYVHEH------VNSFECYGV 353 (360)
Q Consensus 311 ~iv~~c~~g~---~~s~~~~~~L~~~G~~~v~~l~GG------~~~w~~~gl 353 (360)
.+|++|.... ..+......|++.|.+++.++.|| ++.|++.|.
T Consensus 52 d~V~iS~~~~~~~~~~~~~~~~L~~~~~~~i~i~~GG~~~~~~~~~~~~~G~ 103 (122)
T cd02071 52 DVIGLSSLSGGHMTLFPEVIELLRELGAGDILVVGGGIIPPEDYELLKEMGV 103 (122)
T ss_pred CEEEEcccchhhHHHHHHHHHHHHhcCCCCCEEEEECCCCHHHHHHHHHCCC
Confidence 4555565433 145566777777888788888886 233566663
No 128
>PF14483 Cut8_M: Cut8 dimerisation domain; PDB: 3Q5W_A 3Q5X_A.
Probab=32.31 E-value=33 Score=20.56 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHHHHHcCC
Q psy3426 22 GHTKLKRVLKAWVTSHPQ 39 (360)
Q Consensus 22 ~~~~L~~iL~~~~~~~p~ 39 (360)
.++.|+.+|...+..||+
T Consensus 11 d~~qL~~lL~~l~~~HPe 28 (38)
T PF14483_consen 11 DKDQLQSLLQSLCERHPE 28 (38)
T ss_dssp -HHHHHHHHHHHHHHSTH
T ss_pred CHHHHHHHHHHHHHhChh
Confidence 567899999999999999
No 129
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=31.27 E-value=94 Score=26.39 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=32.3
Q ss_pred hcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccccc
Q psy3426 306 NNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSF 348 (360)
Q Consensus 306 ~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w 348 (360)
+.++++|++++.+|. +..++..|...|+.++.+++...-..
T Consensus 18 kl~~~~VlviG~Ggl--Gs~ia~~La~~Gv~~i~lvD~d~ve~ 58 (202)
T TIGR02356 18 RLLNSHVLIIGAGGL--GSPAALYLAGAGVGTIVIVDDDHVDL 58 (202)
T ss_pred HhcCCCEEEECCCHH--HHHHHHHHHHcCCCeEEEecCCEEcc
Confidence 345678888887766 77899999999999999998875433
No 130
>TIGR00246 tRNA_RlmH_YbeA rRNA large subunit m3Psi methyltransferase RlmH. This protein, in the SPOUT methyltransferase family, previously designated YbeA in E. coli, was shown to be responsible for a further modification, a methylation, to a pseudouridine base in ribosomal large subunit RNA.
Probab=31.16 E-value=1.1e+02 Score=24.74 Aligned_cols=43 Identities=12% Similarity=0.047 Sum_probs=31.4
Q ss_pred cCCCeEEEEcCCCch-hHHHHHHHHHH---cCCCcEEEeccccccccc
Q psy3426 307 NKGSIIVIVGGEDSM-RQAKFARFIVR---LGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 307 ~~~~~iv~~c~~g~~-~s~~~~~~L~~---~G~~~v~~l~GG~~~w~~ 350 (360)
.++..+|+.+..|.. .|...|..|.+ .| .++..+-||-.|+.+
T Consensus 63 ~~~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g-~~i~FvIGGa~G~~~ 109 (153)
T TIGR00246 63 IGKAHVVTLDIPGKPWTTPQLADTLEKWKTDG-RDVTLLIGGPEGLSP 109 (153)
T ss_pred CCCCeEEEEcCCCCcCCHHHHHHHHHHHhccC-CeEEEEEcCCCcCCH
Confidence 345678888888874 77888888874 46 579999999766543
No 131
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=31.06 E-value=91 Score=25.44 Aligned_cols=42 Identities=17% Similarity=0.309 Sum_probs=31.3
Q ss_pred CCeEEEEcCCCch-hHHHHHHHHHHc---CCCcEEEeccccccccc
Q psy3426 309 GSIIVIVGGEDSM-RQAKFARFIVRL---GFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 309 ~~~iv~~c~~g~~-~s~~~~~~L~~~---G~~~v~~l~GG~~~w~~ 350 (360)
+..+|+.+..|.. .|...|..+.+. |..++..+-||-.++.+
T Consensus 67 ~~~~i~LDe~Gk~~sS~~fA~~l~~~~~~g~~~i~F~IGGa~G~~~ 112 (157)
T PRK00103 67 GARVIALDERGKQLSSEEFAQELERWRDDGRSDVAFVIGGADGLSP 112 (157)
T ss_pred CCEEEEEcCCCCcCCHHHHHHHHHHHHhcCCccEEEEEcCccccCH
Confidence 4567888888874 778888888654 66689999999776643
No 132
>PF00782 DSPc: Dual specificity phosphatase, catalytic domain; InterPro: IPR000340 Protein tyrosine (pTyr) phosphorylation is a common post-translational modification which can create novel recognition motifs for protein interactions and cellular localisation, affect protein stability, and regulate enzyme activity. Consequently, maintaining an appropriate level of protein tyrosine phosphorylation is essential for many cellular functions. Tyrosine-specific protein phosphatases (PTPase; 3.1.3.48 from EC) catalyse the removal of a phosphate group attached to a tyrosine residue, using a cysteinyl-phosphate enzyme intermediate. These enzymes are key regulatory components in signal transduction pathways (such as the MAP kinase pathway) and cell cycle control, and are important in the control of cell growth, proliferation, differentiation and transformation [, ]. The PTP superfamily can be divided into four subfamilies []: (1) pTyr-specific phosphatases (2) dual specificity phosphatases (dTyr and dSer/dThr) (3) Cdc25 phosphatases (dTyr and/or dThr) (4) LMW (low molecular weight) phosphatases Based on their cellular localisation, PTPases are also classified as: Receptor-like, which are transmembrane receptors that contain PTPase domains [] Non-receptor (intracellular) PTPases [] All PTPases carry the highly conserved active site motif C(X)5R (PTP signature motif), employ a common catalytic mechanism, and share a similar core structure made of a central parallel beta-sheet with flanking alpha-helices containing a beta-loop-alpha-loop that encompasses the PTP signature motif []. Functional diversity between PTPases is endowed by regulatory domains and subunits. This entry represents dual specificity protein-tyrosine phosphatases. Ser/Thr and Tyr dual specificity phosphatases are a group of enzymes with both Ser/Thr (3.1.3.16 from EC) and tyrosine specific protein phosphatase (3.1.3.48 from EC) activity able to remove both the serine/threonine or tyrosine-bound phosphate group from a wide range of phosphoproteins, including a number of enzymes which have been phosphorylated under the action of a kinase. Dual specificity protein phosphatases (DSPs) regulate mitogenic signal transduction and control the cell cycle. The crystal structure of a human DSP, vaccinia H1-related phosphatase (or VHR), has been determined at 2.1 angstrom resolution []. A shallow active site pocket in VHR allows for the hydrolysis of phosphorylated serine, threonine, or tyrosine protein residues, whereas the deeper active site of protein tyrosine phosphatases (PTPs) restricts substrate specificity to only phosphotyrosine. Positively charged crevices near the active site may explain the enzyme's preference for substrates with two phosphorylated residues. The VHR structure defines a conserved structural scaffold for both DSPs and PTPs. A "recognition region" connecting helix alpha1 to strand beta1, may determine differences in substrate specificity between VHR, the PTPs, and other DSPs. These proteins may also have inactive phosphatase domains, and dependent on the domain composition this loss of catalytic activity has different effects on protein function. Inactive single domain phosphatases can still specifically bind substrates, and protect again dephosphorylation, while the inactive domains of tandem phosphatases can be further subdivided into two classes. Those which bind phosphorylated tyrosine residues may recruit multi-phosphorylated substrates for the adjacent active domains and are more conserved, while the other class have accumulated several variable amino acid substitutions and have a complete loss of tyrosine binding capability. The second class shows a release of evolutionary constraint for the sites around the catalytic centre, which emphasises a difference in function from the first group. There is a region of higher conservation common to both classes, suggesting a new regulatory centre [].; GO: 0008138 protein tyrosine/serine/threonine phosphatase activity, 0006470 protein dephosphorylation; PDB: 2G6Z_A 1MKP_A 1YZ4_A 2P4D_A 1M3G_A 1ZZW_A 2OUD_A 2HXP_A 3LJ8_A 1OHD_A ....
Probab=31.05 E-value=73 Score=24.55 Aligned_cols=29 Identities=14% Similarity=0.232 Sum_probs=19.7
Q ss_pred CCCeEEEEcCCCchhHHH--HHHHHHHcCCC
Q psy3426 308 KGSIIVIVGGEDSMRQAK--FARFIVRLGFP 336 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~--~~~~L~~~G~~ 336 (360)
++..|.|+|..|..||.. +++.+...|.+
T Consensus 72 ~~~~VlVHC~~G~~RS~~v~~ayLm~~~~~~ 102 (133)
T PF00782_consen 72 EGGKVLVHCKAGLSRSGAVAAAYLMKKNGMS 102 (133)
T ss_dssp TTSEEEEEESSSSSHHHHHHHHHHHHHHTSS
T ss_pred ccceeEEEeCCCcccchHHHHHHHHHHcCCC
Confidence 578999999999866654 33344445654
No 133
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=30.19 E-value=79 Score=28.54 Aligned_cols=34 Identities=21% Similarity=0.283 Sum_probs=26.6
Q ss_pred CCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecc
Q psy3426 308 KGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHE 343 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~G 343 (360)
+++++++++.+|. +..++..|.+.|.++|++++-
T Consensus 126 ~~k~vlIlGaGGa--araia~aL~~~G~~~I~I~nR 159 (284)
T PRK12549 126 SLERVVQLGAGGA--GAAVAHALLTLGVERLTIFDV 159 (284)
T ss_pred cCCEEEEECCcHH--HHHHHHHHHHcCCCEEEEECC
Confidence 4567888887776 777888888899988887753
No 134
>KOG0333|consensus
Probab=29.57 E-value=88 Score=30.84 Aligned_cols=41 Identities=27% Similarity=0.356 Sum_probs=32.7
Q ss_pred hHHhcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccc
Q psy3426 303 ILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHV 345 (360)
Q Consensus 303 ~~~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~ 345 (360)
.+...-+.+++++.+.-. .+..+|..|.+.|| +++.|.||-
T Consensus 511 il~~~~~ppiIIFvN~kk-~~d~lAk~LeK~g~-~~~tlHg~k 551 (673)
T KOG0333|consen 511 ILESNFDPPIIIFVNTKK-GADALAKILEKAGY-KVTTLHGGK 551 (673)
T ss_pred HHHhCCCCCEEEEEechh-hHHHHHHHHhhccc-eEEEeeCCc
Confidence 344444668888888877 78999999999998 588999984
No 135
>PF02302 PTS_IIB: PTS system, Lactose/Cellobiose specific IIB subunit; InterPro: IPR003501 The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIB PTS system cytoplasmic enzymes. The fold of IIB cellobiose shows similar structure to mammalian tyrosine phosphatases. This signature is often found downstream of IPR003352 from INTERPRO.; GO: 0008982 protein-N(PI)-phosphohistidine-sugar phosphotransferase activity, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system; PDB: 1TVM_A 2WY2_D 1IIB_A 2WWV_D 1H9C_A 1E2B_A 2L2Q_A 2KYR_A 3CZC_A 3NBM_A ....
Probab=29.17 E-value=80 Score=22.45 Aligned_cols=26 Identities=27% Similarity=0.264 Sum_probs=17.0
Q ss_pred eEEEEcCCCchhHHHHHHHH----HHcCCC
Q psy3426 311 IIVIVGGEDSMRQAKFARFI----VRLGFP 336 (360)
Q Consensus 311 ~iv~~c~~g~~~s~~~~~~L----~~~G~~ 336 (360)
.|++.|.+|...|..++..+ .+.|++
T Consensus 1 kIlvvC~~Gi~TS~~~~~~i~~~~~~~gi~ 30 (90)
T PF02302_consen 1 KILVVCGSGIGTSLMVANKIKKALKELGIE 30 (90)
T ss_dssp EEEEEESSSSHHHHHHHHHHHHHHHHTTEC
T ss_pred CEEEECCChHHHHHHHHHHHHHHHHhccCc
Confidence 47899999984444444554 456865
No 136
>PF07755 DUF1611: Protein of unknown function (DUF1611); InterPro: IPR011669 This entry contains a number of hypothetical bacterial and archaeal proteins. The region is approximately 350 residues long. A member of this family (Q6M063 from SWISSPROT) is thought to associate with another subunit to form an H+-transporting ATPase, but no evidence has been found to support this.; PDB: 2G0T_A 2OBN_A.
Probab=29.00 E-value=1e+02 Score=28.21 Aligned_cols=22 Identities=9% Similarity=0.019 Sum_probs=14.2
Q ss_pred hHHHHHHHHHHcCCCcEEEecc
Q psy3426 322 RQAKFARFIVRLGFPKVTYVHE 343 (360)
Q Consensus 322 ~s~~~~~~L~~~G~~~v~~l~G 343 (360)
.+....+.|++.|++-..+-.|
T Consensus 129 Tal~L~~~l~~~G~~a~fvaTG 150 (301)
T PF07755_consen 129 TALELRRALRERGINAGFVATG 150 (301)
T ss_dssp HHHHHHHHHHHTT--EEEEE-S
T ss_pred HHHHHHHHHHHcCCCceEEecC
Confidence 5667888899999986655554
No 137
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=28.57 E-value=98 Score=27.76 Aligned_cols=41 Identities=20% Similarity=0.115 Sum_probs=32.3
Q ss_pred HHhcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccc
Q psy3426 304 LFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVN 346 (360)
Q Consensus 304 ~~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~ 346 (360)
..+.++.+|++++.+|. ...++..|.+.|+.++.+++....
T Consensus 25 ~~kL~~s~VlVvG~GGV--Gs~vae~Lar~GVg~itLiD~D~V 65 (268)
T PRK15116 25 LQLFADAHICVVGIGGV--GSWAAEALARTGIGAITLIDMDDV 65 (268)
T ss_pred HHHhcCCCEEEECcCHH--HHHHHHHHHHcCCCEEEEEeCCEe
Confidence 33446778888887776 788999999999999998887543
No 138
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=27.83 E-value=1e+02 Score=30.72 Aligned_cols=31 Identities=16% Similarity=0.201 Sum_probs=24.6
Q ss_pred CeEEEEcCCCc--hhHHHHHHHHHHcCCCcEEEe
Q psy3426 310 SIIVIVGGEDS--MRQAKFARFIVRLGFPKVTYV 341 (360)
Q Consensus 310 ~~iv~~c~~g~--~~s~~~~~~L~~~G~~~v~~l 341 (360)
++|+++|..|+ +.+-.+|+.|...|++ |.++
T Consensus 136 ~~VlVlcGpGNNGGDGLVaAR~L~~~G~~-V~V~ 168 (544)
T PLN02918 136 SRVLAICGPGNNGGDGLVAARHLHHFGYK-PFVC 168 (544)
T ss_pred CEEEEEECCCcCHHHHHHHHHHHHHCCCc-eEEE
Confidence 57999998876 3777899999999996 5544
No 139
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=27.72 E-value=72 Score=26.31 Aligned_cols=27 Identities=19% Similarity=0.254 Sum_probs=16.6
Q ss_pred CCCeEEEEcCCCchhHHH-HHHHHHHcC
Q psy3426 308 KGSIIVIVGGEDSMRQAK-FARFIVRLG 334 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~-~~~~L~~~G 334 (360)
.+++|+++|.+|-+|+.. ||-.|.+.|
T Consensus 132 ~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 132 NGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp TT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 578999999999877766 455555554
No 140
>TIGR00853 pts-lac PTS system, lactose/cellobiose family IIB component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Lac family includes several sequenced lactose (b-galactoside) permeases of Gram-positive bacteria as well as those in E. coli. While the Lac family usually consists of two polypeptide components IIA and IICB, the Chb permease of E. coli consists of three IIA, IIB and IIC. This family is specific for the IIB subunit of the Lac PTS family.
Probab=27.57 E-value=91 Score=22.91 Aligned_cols=35 Identities=11% Similarity=0.180 Sum_probs=21.9
Q ss_pred CCeEEEEcCCCchhHHHHHHHH----HHcCCCcEEEecccc
Q psy3426 309 GSIIVIVGGEDSMRQAKFARFI----VRLGFPKVTYVHEHV 345 (360)
Q Consensus 309 ~~~iv~~c~~g~~~s~~~~~~L----~~~G~~~v~~l~GG~ 345 (360)
.++|++.|++|. .+..++..+ .+.|++ +.+-..++
T Consensus 3 ~~~ILl~C~~G~-sSS~l~~k~~~~~~~~gi~-~~v~a~~~ 41 (95)
T TIGR00853 3 ETNILLLCAAGM-STSLLVNKMNKAAEEYGVP-VKIAAGSY 41 (95)
T ss_pred ccEEEEECCCch-hHHHHHHHHHHHHHHCCCc-EEEEEecH
Confidence 458999999998 555555555 445775 44434343
No 141
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=27.26 E-value=83 Score=25.84 Aligned_cols=33 Identities=27% Similarity=0.368 Sum_probs=24.8
Q ss_pred cCCCeEEEEcCCCc--hhHHHHHHHHHHcCCCcEEE
Q psy3426 307 NKGSIIVIVGGEDS--MRQAKFARFIVRLGFPKVTY 340 (360)
Q Consensus 307 ~~~~~iv~~c~~g~--~~s~~~~~~L~~~G~~~v~~ 340 (360)
.+..+|+++|..|+ ..+-.+|+.|...|++ |.+
T Consensus 23 ~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~-V~v 57 (169)
T PF03853_consen 23 PKGPRVLILCGPGNNGGDGLVAARHLANRGYN-VTV 57 (169)
T ss_dssp CTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCE-EEE
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHHCCCe-EEE
Confidence 35678999998887 2778899999999996 655
No 142
>TIGR00342 thiazole biosynthesis/tRNA modification protein ThiI. The protein product of the thiI gene is required for the synthesis of the thiazole moiety in thiamine biosynthesis. It also acts in the generation of 4-thiouridine in tRNA, and may occur in species (such as Mycoplasma genitalium) that lack de novo thiamine biosynthesis.
Probab=26.85 E-value=2.9e+02 Score=26.02 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=35.6
Q ss_pred CCEEEEEcCCccchhh-ccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCCCchhHHHHHHHHHHc
Q psy3426 255 PKVLVIDIRDNEEYVA-ESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRL 333 (360)
Q Consensus 255 ~~~~iiDvR~~~e~~~-ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~~s~~~~~~L~~~ 333 (360)
+-.+-|++|...-|-- ..+||.=-+|... +.++++..++|. .|..+++.+.+.
T Consensus 142 d~~i~vei~~~~ayi~~~~~~g~gGlP~g~-------------------------~~kvlvllSGGi-DS~vaa~ll~kr 195 (371)
T TIGR00342 142 DITVHIEIREDEFLIITERYEGIGGLPVGT-------------------------QGKVLALLSGGI-DSPVAAFMMMKR 195 (371)
T ss_pred CEEEEEEEECCEEEEEEEeEecCCCcCcCc-------------------------CCeEEEEecCCc-hHHHHHHHHHHc
Confidence 3356889998766543 4556666666552 234566666666 677777777777
Q ss_pred CCC
Q psy3426 334 GFP 336 (360)
Q Consensus 334 G~~ 336 (360)
|++
T Consensus 196 G~~ 198 (371)
T TIGR00342 196 GCR 198 (371)
T ss_pred CCe
Confidence 764
No 143
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=26.80 E-value=1.1e+02 Score=27.01 Aligned_cols=41 Identities=17% Similarity=0.228 Sum_probs=32.6
Q ss_pred cCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccc
Q psy3426 307 NKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFE 349 (360)
Q Consensus 307 ~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~ 349 (360)
.+.++|++++.+|- ...++..|...|+.++.++++..-...
T Consensus 30 L~~~~VliiG~Ggl--Gs~va~~La~~Gvg~i~lvD~D~ve~s 70 (245)
T PRK05690 30 LKAARVLVVGLGGL--GCAASQYLAAAGVGTLTLVDFDTVSLS 70 (245)
T ss_pred hcCCeEEEECCCHH--HHHHHHHHHHcCCCEEEEEcCCEECcc
Confidence 34678888877665 778999999999999999998765443
No 144
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=26.72 E-value=94 Score=28.16 Aligned_cols=33 Identities=15% Similarity=0.306 Sum_probs=24.9
Q ss_pred CCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEec
Q psy3426 308 KGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVH 342 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~ 342 (360)
+++++++++.+|. +..++..|...|.+++.++.
T Consensus 123 ~~k~vlvlGaGGa--arAi~~~l~~~g~~~i~i~n 155 (288)
T PRK12749 123 KGKTMVLLGAGGA--STAIGAQGAIEGLKEIKLFN 155 (288)
T ss_pred CCCEEEEECCcHH--HHHHHHHHHHCCCCEEEEEe
Confidence 4567888887766 55677778888998888764
No 145
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=26.47 E-value=91 Score=27.08 Aligned_cols=34 Identities=24% Similarity=0.343 Sum_probs=26.7
Q ss_pred CCCeEEEEcCCCchhHHHHHHHHHHcCCC--cEEEecc
Q psy3426 308 KGSIIVIVGGEDSMRQAKFARFIVRLGFP--KVTYVHE 343 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~~~~~L~~~G~~--~v~~l~G 343 (360)
+++++++++.++. +..++..|...|.+ ++++++-
T Consensus 24 ~~~rvlvlGAGgA--g~aiA~~L~~~G~~~~~i~ivdr 59 (226)
T cd05311 24 EEVKIVINGAGAA--GIAIARLLLAAGAKPENIVVVDS 59 (226)
T ss_pred cCCEEEEECchHH--HHHHHHHHHHcCcCcceEEEEeC
Confidence 4668888887665 77788888889998 8887664
No 146
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=25.96 E-value=1e+02 Score=27.88 Aligned_cols=33 Identities=15% Similarity=0.231 Sum_probs=25.0
Q ss_pred CCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEec
Q psy3426 308 KGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVH 342 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~ 342 (360)
+++++++.+.+| .+..++..|.+.|.++|.++.
T Consensus 125 ~~k~vlI~GAGG--agrAia~~La~~G~~~V~I~~ 157 (289)
T PRK12548 125 KGKKLTVIGAGG--AATAIQVQCALDGAKEITIFN 157 (289)
T ss_pred CCCEEEEECCcH--HHHHHHHHHHHCCCCEEEEEe
Confidence 456777777754 467788888899998888764
No 147
>PRK01269 tRNA s(4)U8 sulfurtransferase; Provisional
Probab=25.45 E-value=1.4e+02 Score=29.22 Aligned_cols=113 Identities=14% Similarity=0.190 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHhHhhCC--CccccccccccchhhhhhhhhhhhhhhcccccccCHH--HHHHHhhhcCCCCC-EEEEEc
Q psy3426 188 VDIEQSVTDSIDIYCVTP--RSITFRMHESESTLLEGALLQRHNQALSEFCSSLSST--DLLDLINTRFKKPK-VLVIDI 262 (360)
Q Consensus 188 ~d~~~li~~A~~l~~~~P--~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~is~~--~l~~~~~~~~~~~~-~~iiDv 262 (360)
-|.+++.+.|.+++.... .+|..+-.+....+..+ .+..+.....|-.. ...--+ .+++ .+-|++
T Consensus 85 ~~~e~I~~~a~~~~~~~~~~~tF~VrarR~~k~~~~S------~ei~r~vG~~I~~~~~~~~VdL----~nPD~~i~VeI 154 (482)
T PRK01269 85 TDLHDIFEKALALYREQLEGKTFCVRVKRRGKHDFTS------IDVERYVGGGLNQHIESAGVDL----KNPDVTVHLEI 154 (482)
T ss_pred CCHHHHHHHHHHHHHHhcCCCeEEEEEEeCCCCCCCh------HHHHHHHHHHHHHhCCCCceeC----CCCCEEEEEEE
Confidence 468899999888876532 34444444443321111 22222221111100 000001 2333 457777
Q ss_pred CCccchh-hccccccccccCCCcccCccCCCCCCCCChhhhhHHhcCCCeEEEEcCCCchhHHHHHHHHHHcCCC
Q psy3426 263 RDNEEYV-AESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFP 336 (360)
Q Consensus 263 R~~~e~~-~ghIpgA~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~ 336 (360)
|...-|- ...+||.=-+|... ..++++..++|. .|..+++.+.+.|++
T Consensus 155 ~~d~~yv~~~~~~g~gGlP~g~-------------------------~gk~lvllSGGi-DS~va~~~~~krG~~ 203 (482)
T PRK01269 155 RDDRLYLVTERHEGLGGFPLGT-------------------------QEDVLSLISGGF-DSGVASYMLMRRGSR 203 (482)
T ss_pred ECCEEEEEEeeeecCCCCCccc-------------------------cCeEEEEEcCCc-hHHHHHHHHHHcCCE
Confidence 7654432 24556655555542 225677777787 788888888888885
No 148
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=25.15 E-value=1.1e+02 Score=27.51 Aligned_cols=32 Identities=19% Similarity=0.243 Sum_probs=24.6
Q ss_pred CCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEec
Q psy3426 309 GSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVH 342 (360)
Q Consensus 309 ~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~ 342 (360)
++++++++.+|. +..++..|.+.|..+++++.
T Consensus 122 ~~~vlilGaGGa--arAi~~aL~~~g~~~i~i~n 153 (272)
T PRK12550 122 DLVVALRGSGGM--AKAVAAALRDAGFTDGTIVA 153 (272)
T ss_pred CCeEEEECCcHH--HHHHHHHHHHCCCCEEEEEe
Confidence 357788877666 77788888889998888764
No 149
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=25.01 E-value=1.1e+02 Score=26.77 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=32.4
Q ss_pred hcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccccc
Q psy3426 306 NNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSF 348 (360)
Q Consensus 306 ~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w 348 (360)
+.++.+|++++.+|- ...++..|...|..++.+++...-..
T Consensus 21 ~L~~~~VlvvG~Ggl--Gs~va~~La~~Gvg~i~lvD~D~ve~ 61 (240)
T TIGR02355 21 ALKASRVLIVGLGGL--GCAASQYLAAAGVGNLTLLDFDTVSL 61 (240)
T ss_pred HHhCCcEEEECcCHH--HHHHHHHHHHcCCCEEEEEeCCcccc
Confidence 345678888888776 77899999999999999998875443
No 150
>PTZ00242 protein tyrosine phosphatase; Provisional
Probab=24.89 E-value=98 Score=25.41 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=19.3
Q ss_pred CCCeEEEEcCCCchhHHH-HHHHHHHcC
Q psy3426 308 KGSIIVIVGGEDSMRQAK-FARFIVRLG 334 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~-~~~~L~~~G 334 (360)
++.+|+|+|..|.+|+.. ++..|.+.|
T Consensus 97 ~g~~V~VHC~aGigRSgt~~a~yL~~~~ 124 (166)
T PTZ00242 97 PPETIAVHCVAGLGRAPILVALALVEYG 124 (166)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHhC
Confidence 477999999999877665 355555544
No 151
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=24.89 E-value=1.5e+02 Score=25.16 Aligned_cols=40 Identities=20% Similarity=0.181 Sum_probs=31.0
Q ss_pred hcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccc
Q psy3426 306 NNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNS 347 (360)
Q Consensus 306 ~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~ 347 (360)
+.+..+|.+++.+|. ...++..|.+.|+.++.+++...-.
T Consensus 18 ~L~~~~V~IvG~Ggl--Gs~ia~~La~~Gvg~i~lvD~D~ve 57 (200)
T TIGR02354 18 KLEQATVAICGLGGL--GSNVAINLARAGIGKLILVDFDVVE 57 (200)
T ss_pred HHhCCcEEEECcCHH--HHHHHHHHHHcCCCEEEEECCCEEc
Confidence 345667888777666 7779999999999999998877433
No 152
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=24.80 E-value=1.1e+02 Score=28.34 Aligned_cols=42 Identities=24% Similarity=0.274 Sum_probs=33.1
Q ss_pred cCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccccccc
Q psy3426 307 NKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 307 ~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~ 350 (360)
.+.++|++++.+|- ...++..|.+.|+.++.++++..-.+.+
T Consensus 22 L~~~~VlIiG~Ggl--Gs~va~~La~aGvg~i~lvD~D~ve~sN 63 (338)
T PRK12475 22 IREKHVLIVGAGAL--GAANAEALVRAGIGKLTIADRDYVEWSN 63 (338)
T ss_pred hcCCcEEEECCCHH--HHHHHHHHHHcCCCEEEEEcCCcccccc
Confidence 35678888877666 7789999999999999999987655433
No 153
>PRK08328 hypothetical protein; Provisional
Probab=24.34 E-value=1.2e+02 Score=26.29 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=31.3
Q ss_pred cCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccc
Q psy3426 307 NKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNS 347 (360)
Q Consensus 307 ~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~ 347 (360)
.++.+|++++.+|- +..++..|...|+.++.+++.....
T Consensus 25 L~~~~VlIiG~GGl--Gs~ia~~La~~Gvg~i~lvD~D~ve 63 (231)
T PRK08328 25 LKKAKVAVVGVGGL--GSPVAYYLAAAGVGRILLIDEQTPE 63 (231)
T ss_pred HhCCcEEEECCCHH--HHHHHHHHHHcCCCEEEEEcCCccC
Confidence 34667888888777 6779999999999999999876543
No 154
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=24.10 E-value=1.3e+02 Score=26.23 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=31.9
Q ss_pred hcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccc
Q psy3426 306 NNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNS 347 (360)
Q Consensus 306 ~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~ 347 (360)
+.++.+|++++-+|. ...++..|.+.|..++.++++..-.
T Consensus 8 ~L~~~~VlVvG~GGv--Gs~va~~Lar~GVg~i~LvD~D~V~ 47 (231)
T cd00755 8 KLRNAHVAVVGLGGV--GSWAAEALARSGVGKLTLIDFDVVC 47 (231)
T ss_pred HHhCCCEEEECCCHH--HHHHHHHHHHcCCCEEEEECCCEEC
Confidence 345668888887777 7789999999999999999887543
No 155
>cd05565 PTS_IIB_lactose PTS_IIB_lactose: subunit IIB of enzyme II (EII) of the lactose-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS) found in Firmicutes as well as Actinobacteria. In this system, EII is a lactose-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIC and IIB domains are expressed as a single protein from the lac operon. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include lactose, chitobiose/lichenan, ascorbate, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=23.96 E-value=1e+02 Score=22.92 Aligned_cols=33 Identities=9% Similarity=0.156 Sum_probs=21.4
Q ss_pred eEEEEcCCCchhHHHHHHHHH----HcCCCcEEEecccc
Q psy3426 311 IIVIVGGEDSMRQAKFARFIV----RLGFPKVTYVHEHV 345 (360)
Q Consensus 311 ~iv~~c~~g~~~s~~~~~~L~----~~G~~~v~~l~GG~ 345 (360)
+|++.|++|. ++..++..++ +.|.+ +.+-..+.
T Consensus 2 ~Ill~C~~Ga-SSs~la~km~~~a~~~gi~-~~i~a~~~ 38 (99)
T cd05565 2 NVLVLCAGGG-TSGLLANALNKGAKERGVP-LEAAAGAY 38 (99)
T ss_pred EEEEECCCCC-CHHHHHHHHHHHHHHCCCc-EEEEEeeH
Confidence 4889999998 6766666654 45774 44444443
No 156
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=23.81 E-value=1.4e+02 Score=25.19 Aligned_cols=39 Identities=23% Similarity=0.359 Sum_probs=31.5
Q ss_pred cCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccc
Q psy3426 307 NKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNS 347 (360)
Q Consensus 307 ~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~ 347 (360)
.++.+|++++.+|- ...++..|...|..++.++++..-.
T Consensus 17 L~~s~VlviG~ggl--Gsevak~L~~~GVg~i~lvD~d~ve 55 (198)
T cd01485 17 LRSAKVLIIGAGAL--GAEIAKNLVLAGIDSITIVDHRLVS 55 (198)
T ss_pred HhhCcEEEECCCHH--HHHHHHHHHHcCCCEEEEEECCcCC
Confidence 34678888877776 7789999999999999999887543
No 157
>PF12854 PPR_1: PPR repeat
Probab=23.56 E-value=1.4e+02 Score=16.85 Aligned_cols=31 Identities=13% Similarity=0.324 Sum_probs=26.1
Q ss_pred CCCCccchHHHHHHHhcccCCHHHHHHHHHH
Q psy3426 116 NFIPELFAIPWFLTMFSHVLPLHKIFHLWDK 146 (360)
Q Consensus 116 ~~~~~~~~~~W~~~lF~~~l~~~~~~~iwD~ 146 (360)
|+.|+.+++.-++.-|.+.=..+...+++|.
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 6778888888888888888888888888875
No 158
>PF03937 Sdh5: Flavinator of succinate dehydrogenase; InterPro: IPR005631 This entry represents a group of uncharacterised small proteins found in both eukaryotes and prokaryotes, including NMA1147 from Neisseria meningitidis [] and YgfY from Escherichia coli []. YgfY may be involved in transcriptional regulation. The structure of these proteins consists of a complex bundle of five alpha-helices, which is composed of an up-down 3-helix bundle plus an orthogonal 2-helix bundle. ; PDB: 2LM4_A 1PUZ_A 2JR5_A 1X6I_A 1X6J_A.
Probab=23.54 E-value=1.5e+02 Score=20.57 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHcHHHHHHHHhcC
Q psy3426 92 EYLSKFSHLIAFHDAELANHMSEIN 116 (360)
Q Consensus 92 ~~~~~~~~lL~~~dp~L~~hL~~~~ 116 (360)
.....|+.+|...||+|+..+....
T Consensus 35 ~el~~fe~lL~~~D~dL~~wl~g~~ 59 (74)
T PF03937_consen 35 EELDAFERLLDLEDPDLYDWLMGRE 59 (74)
T ss_dssp HHHHHHHHHHTS-HHHHHHHHCTSS
T ss_pred HHHHHHHHHHcCCCHHHHHHHhCCC
Confidence 3567899999999999999998763
No 159
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=23.46 E-value=1.1e+02 Score=21.82 Aligned_cols=21 Identities=14% Similarity=0.147 Sum_probs=14.1
Q ss_pred eEEEEcCCCchhHHHHHHHHH
Q psy3426 311 IIVIVGGEDSMRQAKFARFIV 331 (360)
Q Consensus 311 ~iv~~c~~g~~~s~~~~~~L~ 331 (360)
.++++|++|.+.+..++..++
T Consensus 2 ~ilivC~~G~~tS~~l~~~i~ 22 (89)
T cd05566 2 KILVACGTGVATSTVVASKVK 22 (89)
T ss_pred EEEEECCCCccHHHHHHHHHH
Confidence 589999999844444554443
No 160
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=23.45 E-value=1.5e+02 Score=25.55 Aligned_cols=41 Identities=20% Similarity=0.332 Sum_probs=32.5
Q ss_pred cCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccc
Q psy3426 307 NKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFE 349 (360)
Q Consensus 307 ~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~ 349 (360)
.+..+|++.+.+|- +..++..|...|+.++.+++...-...
T Consensus 19 L~~~~VlivG~Ggl--Gs~va~~La~~Gvg~i~lvD~D~ve~s 59 (228)
T cd00757 19 LKNARVLVVGAGGL--GSPAAEYLAAAGVGKLGLVDDDVVELS 59 (228)
T ss_pred HhCCcEEEECCCHH--HHHHHHHHHHcCCCEEEEEcCCEEcCc
Confidence 34678888887776 778999999999999999988755443
No 161
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=22.74 E-value=1.3e+02 Score=23.71 Aligned_cols=35 Identities=20% Similarity=0.280 Sum_probs=26.4
Q ss_pred EEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccccc
Q psy3426 312 IVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSF 348 (360)
Q Consensus 312 iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w 348 (360)
|++++.+| -...++..|.+.|+.++.++++..-..
T Consensus 2 VliiG~Gg--lGs~ia~~L~~~Gv~~i~ivD~d~v~~ 36 (143)
T cd01483 2 VLLVGLGG--LGSEIALNLARSGVGKITLIDFDTVEL 36 (143)
T ss_pred EEEECCCH--HHHHHHHHHHHCCCCEEEEEcCCCcCc
Confidence 45555544 478899999999999999998875443
No 162
>KOG2018|consensus
Probab=22.67 E-value=1.8e+02 Score=26.78 Aligned_cols=38 Identities=24% Similarity=0.322 Sum_probs=29.8
Q ss_pred hHHhcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEec
Q psy3426 303 ILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVH 342 (360)
Q Consensus 303 ~~~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~ 342 (360)
...+.++.-||+++.+|. ...++..|.+.|..++.+++
T Consensus 68 ~m~kl~~syVVVVG~GgV--GSwv~nmL~RSG~qKi~iVD 105 (430)
T KOG2018|consen 68 GMEKLTNSYVVVVGAGGV--GSWVANMLLRSGVQKIRIVD 105 (430)
T ss_pred HHHHhcCcEEEEEecCch--hHHHHHHHHHhcCceEEEec
Confidence 334456778888888887 77899999999998888765
No 163
>PRK09590 celB cellobiose phosphotransferase system IIB component; Reviewed
Probab=22.38 E-value=1.2e+02 Score=22.86 Aligned_cols=29 Identities=10% Similarity=0.107 Sum_probs=19.5
Q ss_pred CeEEEEcCCCchhHHHHHHHHH----HcCCCcEEE
Q psy3426 310 SIIVIVGGEDSMRQAKFARFIV----RLGFPKVTY 340 (360)
Q Consensus 310 ~~iv~~c~~g~~~s~~~~~~L~----~~G~~~v~~ 340 (360)
++|++.|++|. .+..++..++ +.|++ +.+
T Consensus 2 kkILlvCg~G~-STSlla~k~k~~~~e~gi~-~~i 34 (104)
T PRK09590 2 KKALIICAAGM-SSSMMAKKTTEYLKEQGKD-IEV 34 (104)
T ss_pred cEEEEECCCch-HHHHHHHHHHHHHHHCCCc-eEE
Confidence 36899999999 5556666554 45775 443
No 164
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=22.27 E-value=1.2e+02 Score=21.18 Aligned_cols=23 Identities=9% Similarity=0.002 Sum_probs=18.1
Q ss_pred eEEEEcCCCchhHHHHHHHHHHc
Q psy3426 311 IIVIVGGEDSMRQAKFARFIVRL 333 (360)
Q Consensus 311 ~iv~~c~~g~~~s~~~~~~L~~~ 333 (360)
+++++|++|.+.+..++..|++.
T Consensus 2 kilivC~~G~~~s~~l~~~l~~~ 24 (85)
T cd05568 2 KALVVCPSGIGTSRLLKSKLKKL 24 (85)
T ss_pred eEEEECCCCHHHHHHHHHHHHHH
Confidence 58899999985666788888765
No 165
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=22.17 E-value=1.7e+02 Score=23.49 Aligned_cols=38 Identities=13% Similarity=0.088 Sum_probs=29.3
Q ss_pred CCCeEEEEcCCCc---hhHHHHHHHHHHcCCCcEEEecccc
Q psy3426 308 KGSIIVIVGGEDS---MRQAKFARFIVRLGFPKVTYVHEHV 345 (360)
Q Consensus 308 ~~~~iv~~c~~g~---~~s~~~~~~L~~~G~~~v~~l~GG~ 345 (360)
.+-++|.+|.-.. .-...+...|++.|.+++.++.||.
T Consensus 62 ~dv~vIgvSsl~g~h~~l~~~lve~lre~G~~~i~v~~GGv 102 (143)
T COG2185 62 EDVDVIGVSSLDGGHLTLVPGLVEALREAGVEDILVVVGGV 102 (143)
T ss_pred cCCCEEEEEeccchHHHHHHHHHHHHHHhCCcceEEeecCc
Confidence 4567777776533 2567788899999999999899985
No 166
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=22.08 E-value=1.5e+02 Score=22.32 Aligned_cols=32 Identities=19% Similarity=0.233 Sum_probs=25.6
Q ss_pred CCCeEEEEc---CCCchhHHHHHHHHHHcCCCcEEE
Q psy3426 308 KGSIIVIVG---GEDSMRQAKFARFIVRLGFPKVTY 340 (360)
Q Consensus 308 ~~~~iv~~c---~~g~~~s~~~~~~L~~~G~~~v~~ 340 (360)
+++++++++ ++|. ....++..|++.|.+.|.+
T Consensus 87 ~gk~vliVDDvi~tG~-Tl~~~~~~L~~~g~~~v~~ 121 (125)
T PF00156_consen 87 KGKRVLIVDDVIDTGG-TLKEAIELLKEAGAKVVGV 121 (125)
T ss_dssp TTSEEEEEEEEESSSH-HHHHHHHHHHHTTBSEEEE
T ss_pred cceeEEEEeeeEcccH-HHHHHHHHHHhCCCcEEEE
Confidence 577888876 4677 8889999999999886654
No 167
>cd05563 PTS_IIB_ascorbate PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.
Probab=22.01 E-value=1e+02 Score=21.82 Aligned_cols=21 Identities=14% Similarity=0.094 Sum_probs=14.0
Q ss_pred EEEEcCCCchhHHHHHHHHHH
Q psy3426 312 IVIVGGEDSMRQAKFARFIVR 332 (360)
Q Consensus 312 iv~~c~~g~~~s~~~~~~L~~ 332 (360)
++++|+.|...|..+...+++
T Consensus 2 ilvvC~~G~~tS~ll~~kl~~ 22 (86)
T cd05563 2 ILAVCGSGLGSSLMLKMNVEK 22 (86)
T ss_pred EEEECCCCccHHHHHHHHHHH
Confidence 789999998555555545443
No 168
>PRK10878 hypothetical protein; Provisional
Probab=21.87 E-value=1.1e+02 Score=21.22 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHcHHHHHHHHhcCCCC
Q psy3426 93 YLSKFSHLIAFHDAELANHMSEINFIP 119 (360)
Q Consensus 93 ~~~~~~~lL~~~dp~L~~hL~~~~~~~ 119 (360)
....|+.+|...||+|+..+...+-.+
T Consensus 23 e~~~Fe~LL~~~D~dL~~W~~g~~~p~ 49 (72)
T PRK10878 23 EKRIFIRLLECDDPDLFNWLMNHGKPA 49 (72)
T ss_pred HHHHHHHHHcCCCHHHHHHHhCCCCCC
Confidence 457899999999999999998866554
No 169
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=21.86 E-value=1.5e+02 Score=24.74 Aligned_cols=34 Identities=21% Similarity=0.272 Sum_probs=26.7
Q ss_pred cCCCeEEEEcC---CCchhHHHHHHHHHHcCCCcEEEe
Q psy3426 307 NKGSIIVIVGG---EDSMRQAKFARFIVRLGFPKVTYV 341 (360)
Q Consensus 307 ~~~~~iv~~c~---~g~~~s~~~~~~L~~~G~~~v~~l 341 (360)
.++++++++++ +|. +...++..|++.|.++|+++
T Consensus 95 v~gk~VLIVDDIidTG~-Tl~~~~~~Lk~~Ga~~V~~a 131 (181)
T PRK09162 95 LKGRTVLVVDDILDEGH-TLAAIRDRCLEMGAAEVYSA 131 (181)
T ss_pred CCCCEEEEEccccCcHH-HHHHHHHHHHhCCCCEEEEE
Confidence 35788888875 566 78889999999998888754
No 170
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=21.33 E-value=1.3e+02 Score=28.03 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=32.3
Q ss_pred cCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccc
Q psy3426 307 NKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFE 349 (360)
Q Consensus 307 ~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~ 349 (360)
.+..+|++++.+|- ...++..|...|+.++.+++...-.+.
T Consensus 22 L~~~~VlVvG~Ggl--Gs~va~~La~aGvg~i~lvD~D~Ve~s 62 (339)
T PRK07688 22 LREKHVLIIGAGAL--GTANAEMLVRAGVGKVTIVDRDYVEWS 62 (339)
T ss_pred hcCCcEEEECCCHH--HHHHHHHHHHcCCCeEEEEeCCccCHH
Confidence 34667888888776 677889999999999999998764443
No 171
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=20.53 E-value=1.4e+02 Score=25.20 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=31.8
Q ss_pred CCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEecccccccc
Q psy3426 308 KGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFE 349 (360)
Q Consensus 308 ~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~ 349 (360)
++.+|++.+.+|- ...++..|...|..++.+++...-.+.
T Consensus 20 ~~s~VlIiG~ggl--G~evak~La~~GVg~i~lvD~d~ve~s 59 (197)
T cd01492 20 RSARILLIGLKGL--GAEIAKNLVLSGIGSLTILDDRTVTEE 59 (197)
T ss_pred HhCcEEEEcCCHH--HHHHHHHHHHcCCCEEEEEECCcccHh
Confidence 4667888876665 778999999999999999988755443
No 172
>PRK06153 hypothetical protein; Provisional
Probab=20.52 E-value=1.9e+02 Score=27.43 Aligned_cols=44 Identities=9% Similarity=0.070 Sum_probs=34.8
Q ss_pred HhcCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccccccc
Q psy3426 305 FNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFEC 350 (360)
Q Consensus 305 ~~~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w~~ 350 (360)
.+.++.+|.+++-+|. ...++..|.+.|..++.++++..-...+
T Consensus 172 ~kL~~~~VaIVG~GG~--GS~Va~~LAR~GVgeI~LVD~D~Ve~SN 215 (393)
T PRK06153 172 AKLEGQRIAIIGLGGT--GSYILDLVAKTPVREIHLFDGDDFLQHN 215 (393)
T ss_pred HHHhhCcEEEEcCCcc--HHHHHHHHHHcCCCEEEEECCCEecccc
Confidence 3445678888888887 7779999999999999999998654433
No 173
>cd00133 PTS_IIB PTS_IIB: subunit IIB of enzyme II (EII) is the central energy-coupling domain of the phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In the multienzyme PTS complex, EII is a carbohydrate-specific permease consisting of two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include chitobiose/lichenan, ascorbate, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system. The PTS is found only in bacteria, where it catalyzes the transport and phosphorylation of numerous monosaccharides, disaccharides, polyols, amino sugars, and other sugar derivatives. The four proteins (domains) forming the PTS phosphorylation cascade (EI, HPr, EIIA, and EIIB), can phosphorylate or interact with numerous non-PTS proteins thereby r
Probab=20.38 E-value=1.1e+02 Score=20.96 Aligned_cols=21 Identities=19% Similarity=0.267 Sum_probs=14.7
Q ss_pred EEEEcCCCchhHHHHHHHHHH
Q psy3426 312 IVIVGGEDSMRQAKFARFIVR 332 (360)
Q Consensus 312 iv~~c~~g~~~s~~~~~~L~~ 332 (360)
++++|++|...+..++..|++
T Consensus 2 il~vc~~G~~~s~~l~~~l~~ 22 (84)
T cd00133 2 ILVVCGSGIGSSSMLAEKLEK 22 (84)
T ss_pred EEEECCCcHhHHHHHHHHHHH
Confidence 788999995466666666654
No 174
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=20.26 E-value=1.9e+02 Score=24.75 Aligned_cols=40 Identities=20% Similarity=0.148 Sum_probs=31.5
Q ss_pred cCCCeEEEEcCCCchhHHHHHHHHHHcCCCcEEEeccccccc
Q psy3426 307 NKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSF 348 (360)
Q Consensus 307 ~~~~~iv~~c~~g~~~s~~~~~~L~~~G~~~v~~l~GG~~~w 348 (360)
.+..+|++++.+|. ...++..|.+.|+.++.+++...-..
T Consensus 26 L~~~~V~ViG~Ggl--Gs~ia~~La~~Gvg~i~lvD~D~ve~ 65 (212)
T PRK08644 26 LKKAKVGIAGAGGL--GSNIAVALARSGVGNLKLVDFDVVEP 65 (212)
T ss_pred HhCCCEEEECcCHH--HHHHHHHHHHcCCCeEEEEeCCEecc
Confidence 35678888887766 77799999999999999998875433
No 175
>PF04343 DUF488: Protein of unknown function, DUF488; InterPro: IPR007438 This family includes several proteins of uncharacterised function.
Probab=20.14 E-value=58 Score=25.08 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=19.8
Q ss_pred HHHHHHHhhhcCCCCCEEEEEcCC-cc----chhhccccccc
Q psy3426 241 STDLLDLINTRFKKPKVLVIDIRD-NE----EYVAESIIGSI 277 (360)
Q Consensus 241 ~~~l~~~~~~~~~~~~~~iiDvR~-~~----e~~~ghIpgA~ 277 (360)
.+++.+.+. ..+=-++||||. |. .|.+..++...
T Consensus 2 ~e~f~~~l~---~~~i~~lVDVR~~P~S~~~~~~k~~l~~~l 40 (122)
T PF04343_consen 2 IERFYDLLK---KNGIRVLVDVRLWPRSRKPGFNKEDLASFL 40 (122)
T ss_pred HHHHHHHHH---HCCCeEEEEECCCCCCCCCCCCHHHHHHHH
Confidence 456666662 223348999996 45 56665555444
Done!