RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3426
(360 letters)
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural
genomics consortium, TBC D SGC, hydrolase activator;
1.90A {Homo sapiens}
Length = 294
Score = 130 bits (327), Expect = 2e-35
Identities = 36/212 (16%), Positives = 75/212 (35%), Gaps = 15/212 (7%)
Query: 8 NLCHQYNELLSSKTGHTKLKRVLKAWVTSHPQ------FDFVYWQGLDSLCAPFVFLNFN 61
++ H + + + L+ + + F + A +
Sbjct: 88 DVLHALKVVRFVSDATPQAEVYLRMYQLESGKLPRSPSFPLEPDDEVFLAIAKAMEEMVE 147
Query: 62 DEATAYACFSTFIPKYLHNFFLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPEL 121
D Y F+ + + + + F + D L H+ + P+L
Sbjct: 148 DSVDCYWITRRFVNQLNTKYR-----DSLPQLPKAFEQYLNLEDGRLLTHLRMCSAAPKL 202
Query: 122 FAIPWFLTMFSHVLPLHKIFHLWDKLLLGDASFPLFIGVSILKQLRETLLSSGFNECILL 181
WF F+ LP + +WDK++ G +F+ V IL + +++ E I
Sbjct: 203 PYDLWFKRCFAGCLPESSLQRVWDKVVSGSCKILVFVAVEILLTFKIKVMALNSAEKITK 262
Query: 182 F-SDLPEVDIEQSVTDSIDI---YCVTPRSIT 209
F ++P+ + V+ +ID+ +C TP +
Sbjct: 263 FLENIPQDSSDAIVSKAIDLWHKHCGTPVHSS 294
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator,
structural genomics, structural genomics consortium,
SGC, hydrolase activator; 2.10A {Homo sapiens} PDB:
3dzx_A
Length = 345
Score = 115 bits (288), Expect = 2e-29
Identities = 39/194 (20%), Positives = 67/194 (34%), Gaps = 31/194 (15%)
Query: 23 HTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFND-------------------- 62
+R+L W HP Y QG++ L PF + +
Sbjct: 127 TEIFERILFIWAIRHP--ASGYVQGINDLVTPFFVVFICEYIEAEEVDTVDVSGVPAEVL 184
Query: 63 ---EATAYACFSTFIPKYLHNFFLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIP 119
EA Y C S + N+ ++ + L++ D ++ H+ +
Sbjct: 185 CNIEADTYWCMSKLLDGIQDNYTFAQPG--IQMKVKMLEELVSRIDEQVHRHLDQHEVRY 242
Query: 120 ELFAIPWFLTMFSHVLPLHKIFHLWDKLLL---GDASFPLFIGVSILKQLRETLLSSG-F 175
FA W + +PL LWD G + F L++ + L + R+ +L F
Sbjct: 243 LQFAFRWMNNLLMREVPLRCTIRLWDTYQSEPDGFSHFHLYVCAAFLVRWRKEILEEKDF 302
Query: 176 NECILLFSDLPEVD 189
E +L +LP
Sbjct: 303 QELLLFLQNLPTAH 316
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular
trafficking, endocytosis, hydrolase, GTPase activation;
1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1
PDB: 2g77_A*
Length = 396
Score = 104 bits (260), Expect = 3e-25
Identities = 41/268 (15%), Positives = 76/268 (28%), Gaps = 41/268 (15%)
Query: 10 CHQYNELLSSKTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFND------- 62
+ + L K+ L+R+L W HP Y QG++ L PF +
Sbjct: 97 TNPHIPLYQFKSVQNSLQRILYLWAIRHPASG--YVQGINDLVTPFFETFLTEYLPPSQI 154
Query: 63 --------------------EATAYACFSTFIPKYLHNFFLRDNSAVVREYLSKFSHLIA 102
EA + C + + + N+ + + S L+
Sbjct: 155 DDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY--IHGQPGILRQVKNLSQLVK 212
Query: 103 FHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLL--GDASFPLFIGV 160
DA+L NH + FA W + + + +WD L +
Sbjct: 213 RIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLSETSQEVTSSYSMS 272
Query: 161 SILKQLRETLLSSGFNECILLFSDLPEVDIEQSVTDSIDIYCVTPRSITFRMHESESTLL 220
S + T + D + + +TP + + + L
Sbjct: 273 SNDIKPPVTPTEPRVASFVTPTKDFQSP--------TTALSNMTPNNAVEDSGKMRQSSL 324
Query: 221 EGALLQRHNQALSEFCSSLSSTDLLDLI 248
+ L ++ L D + I
Sbjct: 325 NEFHVFVCAAFLIKWSDQLMEMDFQETI 352
>2qq8_A TBC1 domain family member 14; structural genomics consortium,
RAB-GAP, SGC, GTPase activation, hydrolase activator;
2.00A {Homo sapiens}
Length = 334
Score = 99.1 bits (247), Expect = 9e-24
Identities = 45/168 (26%), Positives = 69/168 (41%), Gaps = 8/168 (4%)
Query: 22 GHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKYLHNF 81
H L +L A+ P D Y QG+ + A V + D A A+ FS + K
Sbjct: 133 YHDMLHSILGAYTCYRP--DVGYVQGMSFIAA--VLILNLDTADAFIAFSNLLNKPCQMA 188
Query: 82 FLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIF 141
F R + ++ Y + F + +L H + N P+++ I W T++S LPL
Sbjct: 189 FFRVDHGLMLTYFAAFEVFFEENLPKLFAHFKKNNLTPDIYLIDWIFTLYSKSLPLDLAC 248
Query: 142 HLWDKLLL-GDASFPLF-IGVSILKQLRETLLSSGFNECILLFSDLPE 187
+WD G+ LF + ILK + L F + LPE
Sbjct: 249 RIWDVFCRDGEEF--LFRTALGILKLFEDILTKMDFIHMAQFLTRLPE 294
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics
consortium, SGC, alternative splicing, GTPase
activation, phosphoprotein; 2.30A {Homo sapiens}
Length = 310
Score = 86.3 bits (214), Expect = 2e-19
Identities = 43/180 (23%), Positives = 75/180 (41%), Gaps = 7/180 (3%)
Query: 21 TGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKY-LH 79
G L ++ KA+ D Y QG L A V L E A+ + Y L
Sbjct: 93 DGQESLYKICKAYSVYDE--DIGYCQGQSFLAA--VLLLHMPEEQAFCVLVKIMYDYGLR 148
Query: 80 NFFLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHK 139
+ + + + + L+ +L +H S++N ++A WFLT+F+ PL
Sbjct: 149 DLYRNNFEDL-HCKFYQLERLMQEQLPDLHSHFSDLNLEAHMYASQWFLTLFTAKFPLCM 207
Query: 140 IFHLWDKLLLGDASFPLFIGVSILKQLRETLLSSGFNECILLF-SDLPEVDIEQSVTDSI 198
+FH+ D LL + + +++LK +E LL + F + F LP+ + +
Sbjct: 208 VFHIIDLLLCEGLNIIFHVALALLKTSKEDLLQADFEGALKFFRVQLPKRYRAEENARRL 267
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase
activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Length = 331
Score = 81.4 bits (201), Expect = 2e-17
Identities = 41/198 (20%), Positives = 74/198 (37%), Gaps = 9/198 (4%)
Query: 21 TGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKY-LH 79
G L +LKA+ + Y QGL + + L E A+ + L
Sbjct: 127 AGQLSLYNILKAYSLLDQ--EVGYCQGLSFVAG--ILLLHMSEEEAFKMLKFLMFDMGLR 182
Query: 80 NFFLRDNSAVVREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHK 139
+ D + + + + S L+ + +L NH+ E P L+A PWFLTMF+ PL
Sbjct: 183 KQYRPDMIIL-QIQMYQLSRLLHDYHRDLYNHLEEHEIGPSLYAAPWFLTMFASQFPLGF 241
Query: 140 IFHLWDKLLLGDASFPLFIGVSILKQLRETLLS-SGFNECILLFSDLPEVDIEQSVTDSI 198
+ ++D + L + +S+L + +L + + +I
Sbjct: 242 VARVFDMIFLQGTEVIFKVALSLLGSHKPLILQHENLETIVDFIKSTLPNLGLVQMEKTI 301
Query: 199 DIYCVTPRSITFRMHESE 216
+ V I ++ E
Sbjct: 302 NQ--VFEMDIAKQLQAYE 317
>1yt8_A Thiosulfate sulfurtransferase; rhodanase domains, cyanide
detoxification, structural genomics, PSI, protein
structure initiative; 1.90A {Pseudomonas aeruginosa}
SCOP: c.46.1.2 c.46.1.2 c.46.1.2 c.46.1.2
Length = 539
Score = 55.1 bits (132), Expect = 2e-08
Identities = 13/105 (12%), Positives = 41/105 (39%), Gaps = 14/105 (13%)
Query: 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSME 296
S ++ D+ + ++ ++D+R+ + + + + N+PL+R+ ++ +
Sbjct: 4 SQIAVRTFHDIRAALLARRELALLDVREEDPFAQAHPLFAANLPLSRLE----LEIHA-- 57
Query: 297 SSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYV 341
+ + I + + A+ + LG+ V +
Sbjct: 58 -------RVPRRDTPITVYDDGE-GLAPVAAQRLHDLGYSDVALL 94
Score = 47.4 bits (112), Expect = 4e-06
Identities = 17/116 (14%), Positives = 38/116 (32%), Gaps = 14/116 (12%)
Query: 226 QRHNQALSEFCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIP 285
+ L E S ++ + + +++D R +EY SI G I++P A +
Sbjct: 116 SKAFGELVEAERHTPSLAAEEVQALLDARAEAVILDARRFDEYQTMSIPGGISVPGAELV 175
Query: 286 DLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYV 341
+ L + + +++ R + ++ G P
Sbjct: 176 L-------------RVAELAPDPRTRVIVNCA-GRTRSIIGTQSLLNAGIPNPVAA 217
Score = 46.3 bits (109), Expect = 1e-05
Identities = 12/92 (13%), Positives = 26/92 (28%), Gaps = 16/92 (17%)
Query: 251 RFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGS 310
+P V+D + Y I G+ + +++ + L +
Sbjct: 387 WLGEPGTRVLDFTASANYAKRHIPGAAWVLRSQLKQ-------------ALERLGTAE-R 432
Query: 311 IIVIVGGEDSMRQAKFARFIVRLGFPKVTYVH 342
++ G R A + L V +
Sbjct: 433 YVLTCGSSLLARFA--VAEVQALSGKPVFLLD 462
Score = 38.2 bits (88), Expect = 0.003
Identities = 20/111 (18%), Positives = 42/111 (37%), Gaps = 16/111 (14%)
Query: 239 LSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESS 298
L L + ++D+R EEY A + GS + P ++
Sbjct: 267 LDLAGLAQWQDE--HDRTTYLLDVRTPEEYEAGHLPGSRSTPGGQLV------------- 311
Query: 299 PEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFE 349
E + + + +G+ +V+V +D +R A ++ ++G+ F
Sbjct: 312 QETDHVASVRGARLVLV-DDDGVRANMSASWLAQMGWQVAVLDGLSEADFS 361
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure,
atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A
{Saccharomyces cerevisiae}
Length = 139
Score = 50.5 bits (121), Expect = 4e-08
Identities = 22/102 (21%), Positives = 38/102 (37%), Gaps = 5/102 (4%)
Query: 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSME 296
S S D+ ++ P V+++D+R+ EY I SIN+P PD + D E
Sbjct: 23 QSYSFEDMKRIVGK--HDPNVVLVDVREPSEYSIVHIPASINVPYRSHPDAFALDPLEFE 80
Query: 297 SSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKV 338
+ + K +I R + + G+
Sbjct: 81 KQIGIPKPDSAK-ELIFYCAS--GKRGGEAQKVASSHGYSNT 119
>1t3k_A Arath CDC25, dual-specificity tyrosine phosphatase; cell cycle,
phosphorylation, plant, hydrolase; NMR {Arabidopsis
thaliana} SCOP: c.46.1.1
Length = 152
Score = 50.3 bits (120), Expect = 6e-08
Identities = 16/77 (20%), Positives = 30/77 (38%), Gaps = 14/77 (18%)
Query: 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSME 296
S ++ST LL L +P + +ID+RD E I GS++ +
Sbjct: 28 SYITSTQLLPLHR----RPNIAIIDVRDEERNYDGHIAGSLHYASGSFD----------D 73
Query: 297 SSPEMNILFNNKGSIIV 313
+ +K +++
Sbjct: 74 KISHLVQNVKDKDTLVF 90
>2j6p_A SB(V)-AS(V) reductase; arsenate reductase, antimonate reductase,
CDC25 phosphatase, rhodanese, C-MYC epitope,
oxidoreductase; HET: EPE; 2.15A {Leishmania major}
Length = 152
Score = 50.0 bits (119), Expect = 8e-08
Identities = 25/111 (22%), Positives = 39/111 (35%), Gaps = 16/111 (14%)
Query: 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSME 296
+ + +L++L++ K VID RD + I+ SIN+P + L
Sbjct: 5 TYIKPEELVELLDNPDSLVKAAVIDCRD-SDRDCGFIVNSINMPTISCTEEMYEKLAKT- 62
Query: 297 SSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVR------LGFPKVTYV 341
LF K + V + +R K A P V YV
Sbjct: 63 -------LFEEKKELAVFHCAQSLVRAPKGANRFALAQKKLGYVLPAV-YV 105
>1qb0_A Protein (M-phase inducer phosphatase 2 (CDC25B)); hydrolase, cell
cycle phosphatase, dual specificity protein phosphatase;
1.91A {Homo sapiens} SCOP: c.46.1.1 PDB: 1cwr_A 1cws_A
2uzq_A
Length = 211
Score = 51.2 bits (122), Expect = 9e-08
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 19/123 (15%)
Query: 238 SLSSTDLLDLINTRFK--KPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSM 295
+S ++ L+ +F K +++D R EY I ++N+PL D S
Sbjct: 45 YISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL-------ERDAESF 97
Query: 296 ESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFI----------VRLGFPKVTYVHEHV 345
+ +K I++ S R + RFI L +P++ +
Sbjct: 98 LLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 157
Query: 346 NSF 348
F
Sbjct: 158 KEF 160
>3f4a_A Uncharacterized protein YGR203W; protein phosphatase,
rhodanese-like family, structural genomics, PSI-2,
protein structure initiative; HET: MSE; 1.80A
{Saccharomyces cerevisiae} PDB: 3fs5_A*
Length = 169
Score = 49.0 bits (116), Expect = 3e-07
Identities = 19/144 (13%), Positives = 46/144 (31%), Gaps = 13/144 (9%)
Query: 204 TPRSITFRMHESESTLLEGALLQRHNQALSEFCSSLSSTDLLDLIN---TRFKKPKVLVI 260
+ E+ +G + +++ L T+L + T + V+
Sbjct: 3 SSHHHHHHSSGRENLYFQG----MDSYSITNV-KYLDPTELHRWMQEGHTTTLREPFQVV 57
Query: 261 DIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDS 320
D+R +Y+ I + +R+ E + +G++ VI S
Sbjct: 58 DVRG-SDYMGGHIKDGWHYAYSRLKQDPEYLRELKHRLLEKQ--ADGRGALNVIFHCMLS 114
Query: 321 MRQAKFA--RFIVRLGFPKVTYVH 342
++ A + L +++
Sbjct: 115 QQRGPSAAMLLLRSLDTAELSRCR 138
>1whb_A KIAA0055; deubiqutinating enzyme, UBPY, structural genomics, riken
structural genomics/proteomics initiative, RSGI,
hydrolase; NMR {Homo sapiens} SCOP: c.46.1.4
Length = 157
Score = 48.2 bits (114), Expect = 4e-07
Identities = 11/82 (13%), Positives = 36/82 (43%), Gaps = 2/82 (2%)
Query: 234 EFCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLG 293
+ ++++ +L ++ K ++++D R ++Y I+ S+++P I +
Sbjct: 12 KEKGAITAKELYTMMTD--KNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWI 69
Query: 294 SMESSPEMNILFNNKGSIIVIV 315
+ + +G++ +V
Sbjct: 70 EAHLPDDSKDTWKKRGNVEYVV 91
>3i2v_A Adenylyltransferase and sulfurtransferase MOCS3; rhodanese, UBA4,
structural genomics, ubiquitin biology, structural
genomics consortium, SGC; 1.25A {Homo sapiens}
Length = 127
Score = 46.7 bits (111), Expect = 7e-07
Identities = 22/114 (19%), Positives = 39/114 (34%), Gaps = 10/114 (8%)
Query: 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDL--ESTDLGS 294
S +S TD L++ L++D+R E + +++IPL + ES L
Sbjct: 1 SRVSVTDYKRLLD---SGAFHLLLDVRPQVEVDICRLPHALHIPLKHLERRDAESLKLLK 57
Query: 295 MESSPEMNILFNNKGSIIVIV--GGEDSMRQAKFARFIVRLGFPKVTYVHEHVN 346
E I ++ G DS K + + L + +
Sbjct: 58 EAIWEEKQGTQEGAAVPIYVICKLGNDS---QKAVKILQSLSAAQELDPLTVRD 108
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol
metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB:
1gn0_A
Length = 108
Score = 46.1 bits (110), Expect = 1e-06
Identities = 10/105 (9%), Positives = 37/105 (35%), Gaps = 26/105 (24%)
Query: 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPD-LESTDLGSME 296
++ D + + + +++DIRD + + + + ++ + + D
Sbjct: 6 CINVADAHQKLQ----EKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFMRDND----- 56
Query: 297 SSPEMNILFNNKGSIIVIV--GGEDSMRQAKFARFIVRLGFPKVT 339
+ ++++ G A+++++ G+ V
Sbjct: 57 -----------FDTPVMVMCYHG---NSSKGAAQYLLQQGYDVVY 87
>3op3_A M-phase inducer phosphatase 3; structural genomics, structural
genomics consortium, SGC, Al alpha sandwich, kinase,
cytosol, hydrolase; 2.63A {Homo sapiens}
Length = 216
Score = 48.2 bits (114), Expect = 1e-06
Identities = 24/116 (20%), Positives = 44/116 (37%), Gaps = 20/116 (17%)
Query: 238 SLSSTDLLDLINTRFKK--PKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSM 295
++ + L++ +F+ K VID R EY+ I G++N+ +L +
Sbjct: 58 YVNPETVAALLSGKFQGLIEKFYVIDCRYPYEYLGGHIQGALNLYS-------QEELFNF 110
Query: 296 ESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIV----------RLGFPKVTYV 341
+ L K IIV S R + R + L +P++ Y+
Sbjct: 111 FLKKPIVPLDTQKRIIIVFHCEFSSERGPRMCRCLREEDRSLNQYPALYYPEL-YI 165
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2,
protein STRU initiative, northeast structural genomics
consortium, NESG; 2.50A {Bacillus halodurans} PDB:
3o3w_A
Length = 144
Score = 46.7 bits (111), Expect = 1e-06
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 20/116 (17%)
Query: 230 QALSEFCSSLS----STDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIP 285
+A + LS DL I ++V+D+RD E Y I +I+IP +I
Sbjct: 5 EAYRHYMKKLSYETDIADLSIDIKKG--YEGIIVVDVRDAEAYKECHIPTAISIPGNKIN 62
Query: 286 DLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYV 341
+ + L + K II G K A +LGF +V +
Sbjct: 63 EDTTKRL------SK------EK-VIITYCWGPACNGATKAAAKFAQLGF-RVKEL 104
>2gwf_A Ubiquitin carboxyl-terminal hydrolase 8; protein-protein complex,
E3 ligase, protein ubiquitination, hydrolase, protease,
UBL conjugation pathway; 2.30A {Homo sapiens} SCOP:
c.46.1.4
Length = 157
Score = 47.0 bits (111), Expect = 1e-06
Identities = 13/95 (13%), Positives = 38/95 (40%), Gaps = 7/95 (7%)
Query: 226 QRHNQALSEF-----CSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIP 280
H+ S ++++ +L ++ K ++++D R ++Y I+ S+++P
Sbjct: 4 SHHHHHHSSGLVPRGSGAITAKELYTMMTD--KNISLIIMDARRMQDYQDSCILHSLSVP 61
Query: 281 LARIPDLESTDLGSMESSPEMNILFNNKGSIIVIV 315
I + + + +G++ +V
Sbjct: 62 EEAISPGVTASWIEAHLPDDSKDTWKKRGNVEYVV 96
>2a2k_A M-phase inducer phosphatase 2; dual specificity, substrate
trapping, active site mutant, hydrolase; 1.52A {Homo
sapiens} PDB: 2ifv_A 1ymd_A 1ym9_A 1ymk_A 1yml_A 1ys0_A
1cwt_A 2ifd_A
Length = 175
Score = 46.9 bits (111), Expect = 1e-06
Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 9/109 (8%)
Query: 238 SLSSTDLLDLINTRFK--KPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSM 295
+S ++ L+ +F K +++D R EY I ++N+PL D S
Sbjct: 25 YISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL-------ERDAESF 77
Query: 296 ESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEH 344
+ +K I++ S R + RFI Y +
Sbjct: 78 LLKSPIAPCSLDKRVILIFHSEFSSERGPRMCRFIRERDRAVNDYPSLY 126
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase,
homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Length = 137
Score = 46.1 bits (110), Expect = 2e-06
Identities = 20/104 (19%), Positives = 37/104 (35%), Gaps = 20/104 (19%)
Query: 239 LSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAE---SIIGSINIPLARIPDLESTDLGSM 295
LS D L+ + P + +ID+RD +E A + ++ G +
Sbjct: 25 LSPKDAYKLLQ---ENPDITLIDVRDPDELKAMGKPDVKNYKHMS-----------RGKL 70
Query: 296 ESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVT 339
E + L K ++V + R A + + GF +
Sbjct: 71 EPLLAKSGLDPEK-PVVVFCKT--AARAALAGKTLREYGFKTIY 111
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp,
NSR437I, NESG, structural genomics, PSI-2, protein
structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Length = 106
Score = 44.2 bits (105), Expect = 3e-06
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 19/89 (21%)
Query: 253 KKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSII 312
+P ++D+RD Y I+G++ +P+ + D S+ L K I
Sbjct: 10 GEPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSL--------------EKSRDI 55
Query: 313 VIV--GGEDSMRQAKFARFIVRLGFPKVT 339
+ G + ++ + GF V+
Sbjct: 56 YVYGAGD---EQTSQAVNLLRSAGFEHVS 81
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural
genomics, protein structure initiative, northeast
structural genomics consortium; 2.26A {Nostoc SP} PDB:
2kl3_A
Length = 141
Score = 45.1 bits (107), Expect = 4e-06
Identities = 17/88 (19%), Positives = 34/88 (38%), Gaps = 19/88 (21%)
Query: 254 KPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIV 313
+P ++D+RD Y I+G++ +P+ + D S+ L K I
Sbjct: 15 EPAFTILDVRDRSTYNDGHIMGAMAMPIEDLVDRASSSL--------------EKSRDIY 60
Query: 314 IV--GGEDSMRQAKFARFIVRLGFPKVT 339
+ G + ++ + GF V+
Sbjct: 61 VYGAGD---EQTSQAVNLLRSAGFEHVS 85
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics,
unknown function, PSI-2, PR structure initiative; NMR
{Helicobacter pylori}
Length = 110
Score = 43.8 bits (104), Expect = 5e-06
Identities = 13/90 (14%), Positives = 29/90 (32%), Gaps = 18/90 (20%)
Query: 251 RFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGS 310
+V+D+R+ +EY + + I + + L +K
Sbjct: 11 EVNFNDFIVVDVRELDEYEELHLPNATLISVNDQEK-------------LADFLSQHKDK 57
Query: 311 IIVIV--GGEDSMRQAKFARFIVRLGFPKV 338
+++ G R A+ + LG+
Sbjct: 58 KVLLHCRAG---RRALDAAKSMHELGYTPY 84
>1c25_A CDC25A; hydrolase, cell cycle phosphatase,dual specificity protein
phosphatase, CDK2; 2.30A {Homo sapiens} SCOP: c.46.1.1
Length = 161
Score = 45.0 bits (106), Expect = 5e-06
Identities = 23/116 (19%), Positives = 48/116 (41%), Gaps = 21/116 (18%)
Query: 238 SLSSTDLLDLINTRFK--KPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSM 295
+S + ++N +F + ++ID R EY I G++N+ + ++E L
Sbjct: 24 YISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLHMEE--EVEDFLL--- 78
Query: 296 ESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIV----------RLGFPKVTYV 341
+ + + K I+V S R + R++ +L +P++ YV
Sbjct: 79 ---KKPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLHYPEL-YV 130
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase,
structural genomics, NPPSFA; 2.00A {Thermus
thermophilus}
Length = 94
Score = 43.3 bits (103), Expect = 7e-06
Identities = 10/49 (20%), Positives = 19/49 (38%), Gaps = 5/49 (10%)
Query: 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPD 286
+ +L L+ VLV+D+R + + +PL +I
Sbjct: 3 KVRPEELPALLEE-----GVLVVDVRPADRRSTPLPFAAEWVPLEKIQK 46
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural
genomics, protein structure initiative; NMR {Arabidopsis
thaliana} SCOP: c.46.1.3
Length = 129
Score = 43.6 bits (103), Expect = 9e-06
Identities = 26/105 (24%), Positives = 41/105 (39%), Gaps = 13/105 (12%)
Query: 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSME 296
SS+S T DL+ +D+R EE+ G+IN+P S + +
Sbjct: 18 SSVSVTVAHDLLLA-----GHRYLDVRTPEEFSQGHACGAINVPYMNRG--ASGMSKNTD 70
Query: 297 SSPEMNILFNNKGSIIVI--VGGEDSMRQAKFARFIVRLGFPKVT 339
+++ F +IIV GG R K ++ GF V
Sbjct: 71 FLEQVSSHFGQSDNIIVGCQSGG----RSIKATTDLLHAGFTGVK 111
>1vee_A Proline-rich protein family; hypothetical protein, structural
genomics, rhodanese domain, riken structural
genomics/proteomics initiative; NMR {Arabidopsis
thaliana} PDB: 2dcq_A
Length = 134
Score = 43.8 bits (103), Expect = 1e-05
Identities = 10/107 (9%), Positives = 31/107 (28%), Gaps = 4/107 (3%)
Query: 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSME 296
SS S+ + + ++DIR ++ + +
Sbjct: 5 SSGSAKNAYTKLG---TDDNAQLLDIRATADFRQVGSPNIKGLGKKAVS-TVYNGEDKPG 60
Query: 297 SSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHE 343
++++ F + + + + + A + GF + +
Sbjct: 61 FLKKLSLKFKDPENTTLYILDKFDGNSELVAELVALNGFKSAYAIKD 107
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus saprophyticus subsp}
Length = 100
Score = 43.0 bits (102), Expect = 1e-05
Identities = 15/49 (30%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPD 286
S++ T+L + I V ++D+R ++E I G+ IP+ IPD
Sbjct: 3 SITVTELKEKIL---DANPVNIVDVRTDQETAMGIIPGAETIPMNSIPD 48
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich,
structural genomics; 2.00A {Staphylococcus aureus subsp}
PDB: 3iwh_A 3mzz_A
Length = 103
Score = 42.6 bits (101), Expect = 1e-05
Identities = 13/49 (26%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPD 286
S+++ +L + + + V ++D+R +EE I + IP+ IPD
Sbjct: 3 SITTDELKNKLL---ESKPVQIVDVRTDEETAMGYIPNAKLIPMDTIPD 48
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics,
rohopseudom palustris, PSI-2, protein structure
initiative; 1.20A {Rhodopseudomonas palustris}
Length = 139
Score = 43.5 bits (103), Expect = 1e-05
Identities = 21/105 (20%), Positives = 37/105 (35%), Gaps = 17/105 (16%)
Query: 239 LSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESII-GSINIPLARIP-DLESTDLGSME 296
L++ D + L + V+++DIRD E + I GS + + ++
Sbjct: 24 LTTADAIALHKS--GASDVVIVDIRDPREIERDGKIPGSFSCTRGMLEFWID-------P 74
Query: 297 SSPEMNILFNNKGSIIVI--VGGEDSMRQAKFARFIVRLGFPKVT 339
SP +F + G R A A+ +G V
Sbjct: 75 QSPYAKPIFQEDKKFVFYCAGGL----RSALAAKTAQDMGLKPVA 115
>2jtq_A Phage shock protein E; solution structure rhodanese, stress
response, transferase; NMR {Escherichia coli} PDB:
2jtr_A 2jts_A
Length = 85
Score = 41.4 bits (98), Expect = 3e-05
Identities = 16/82 (19%), Positives = 31/82 (37%), Gaps = 18/82 (21%)
Query: 260 IDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIV--GG 317
ID+R E+Y E + G+INIPL + + + +K + + G
Sbjct: 5 IDVRVPEQYQQEHVQGAINIPLKEVKE-------------RIATAVPDKNDTVKVYCNAG 51
Query: 318 EDSMRQAKFARFIVRLGFPKVT 339
+ + + +G+ V
Sbjct: 52 ---RQSGQAKEILSEMGYTHVE 70
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta
protein, structural genomics, PSI-2, protein structure
initiative; 2.40A {Thermoplasma volcanium GSS1}
Length = 108
Score = 41.0 bits (97), Expect = 4e-05
Identities = 15/49 (30%), Positives = 27/49 (55%), Gaps = 6/49 (12%)
Query: 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPD 286
S+++ DL + I V+D+R+ E + SI SINIP++ + +
Sbjct: 5 SINAADLYENIK------AYTVLDVREPFELIFGSIANSINIPISELRE 47
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD
DATA with FBAR, structural genomics, PSI; 1.80A
{Mycobacterium tuberculosis}
Length = 148
Score = 41.2 bits (96), Expect = 1e-04
Identities = 11/113 (9%), Positives = 36/113 (31%), Gaps = 10/113 (8%)
Query: 235 FCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGS 294
+ ++ ++++ P+ +++D+R E+ + ++ + +T G+
Sbjct: 3 YAGDITPLQAWEMLS---DNPRAVLVDVRCEAEWRFVGVPDLSSLGREVVYVEWATSDGT 59
Query: 295 M------ESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYV 341
E + + ++ + + R A G V
Sbjct: 60 HNDNFLAELRDRIPADADQHERPVIFLCRSGN-RSIGAAEVATEAGITPAYNV 111
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 43.1 bits (101), Expect = 1e-04
Identities = 39/225 (17%), Positives = 70/225 (31%), Gaps = 60/225 (26%)
Query: 143 LWDKLLLGDASFPLFIGVSILKQLRE-----TLLSSGF-------NECILLFSDLPEVDI 190
+W++ D F G SIL + T+ G N ++F + + +
Sbjct: 1645 VWNR---ADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKL 1701
Query: 191 E-QSVTDSIDIYCVTPRSITFR-----MHESEST-----LLEGALLQR------------ 227
+ + + I+ S TFR + ++ T L+E A +
Sbjct: 1702 KTEKIFKEINE---HSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPADAT 1758
Query: 228 ---H----NQALSEFCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIP 280
H AL+ +S L++++ R +V V RD +I IN P
Sbjct: 1759 FAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVP--RDELGRSNYGMIA-IN-P 1814
Query: 281 LARIPDLESTDLGSM--ESSPEMNIL-----FNNKGSIIVIVGGE 318
L + L +N + V G+
Sbjct: 1815 GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQYVA-AGD 1858
Score = 35.0 bits (80), Expect = 0.042
Identities = 71/413 (17%), Positives = 131/413 (31%), Gaps = 149/413 (36%)
Query: 4 YFGFNLCHQYNELLS-SKTGHTKLKR-------VLKAWVTSHPQFDFVYWQGLDS----- 50
YF EL +T H + L + + + V+ QGL+
Sbjct: 169 YF--------EELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLE 220
Query: 51 ----------LCA-----PFVFLNFNDEATAYACFSTFI------PKYLHNFFLRDNSAV 89
L + P + + A + P L ++ L+ +
Sbjct: 221 NPSNTPDKDYLLSIPISCPLIGV------IQLAHYVVTAKLLGFTPGELRSY-LKGATGH 273
Query: 90 VREYLSKFSHLIA-------FHDAELANHMSEINFIPELFAIPW-FLTMFSHVLPLHKIF 141
+ ++ + IA F + + LF I + +
Sbjct: 274 SQGLVT--AVAIAETDSWESFFVS--VRKAITV-----LFFIGVRCYEAYPNTS------ 318
Query: 142 HLWDKLLL-------GDASFPLF--IGVSILKQLRETLLSSGFNECILLFSDLPEVD-IE 191
L +L G S P+ ++ +Q+++ + + N S LP +E
Sbjct: 319 -LPPSILEDSLENNEGVPS-PMLSISNLT-QEQVQDYV--NKTN------SHLPAGKQVE 367
Query: 192 QSVTDSIDIYCVT--PRS-----ITFRMHESESTLLEGALLQRHNQA---LSE------- 234
S+ + V+ P+S +T R ++ S L +Q+ SE
Sbjct: 368 ISLVNGAKNLVVSGPPQSLYGLNLTLRKAKAPSGL---------DQSRIPFSERKLKFSN 418
Query: 235 --------FCSSL--SSTDLL--DLINTRFK-KPKVLVI---------DIRDNEEYVAES 272
F S L ++DL+ DL+ K + I D+R ++E
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISER 478
Query: 273 IIGSI-NIPL--ARIPDLEST---DLGSMESSPEMNILFNNK-GS-IIVIVGG 317
I+ I +P+ ++T D G +S + NK G+ + VIV G
Sbjct: 479 IVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVAG 531
Score = 34.6 bits (79), Expect = 0.055
Identities = 32/236 (13%), Positives = 70/236 (29%), Gaps = 56/236 (23%)
Query: 70 FSTFIPKYLHNFFLRDNSAVVREYLSKF-SHLIAFHDAELANHMSEINFIPELFAIPWFL 128
F+ +P+ F D E + KF ++ + + ++ L L
Sbjct: 37 FNKILPEPTEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQV-----LNLC---L 88
Query: 129 TMF-SHVLPLHKIFHLWDKLLLGDASFPLFIGVSILKQLRETLLSSGFNECILLFSDLPE 187
T F + L + I H LL + L ++K + + S L
Sbjct: 89 TEFENCYLEGNDI-HALAAKLLQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSAL-- 145
Query: 188 VDIEQSVTDSIDIYCVTPRSITF--------------RMHESESTLLEGALLQRHNQALS 233
+ + + F ++++ L+ L++ + LS
Sbjct: 146 --FRAVGEGNAQLVAI------FGGQGNTDDYFEELRDLYQTYHVLVG-DLIKFSAETLS 196
Query: 234 EFCSSLSST--------DLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPL 281
E + ++L+ + P +++Y+ I+ PL
Sbjct: 197 ELIRTTLDAEKVFTQGLNILEWLENPSNTP---------DKDYLLSI---PISCPL 240
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
2.10A {Staphylococcus aureus}
Length = 466
Score = 42.7 bits (100), Expect = 1e-04
Identities = 4/36 (11%), Positives = 19/36 (52%)
Query: 251 RFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPD 286
+ ++D+R++ E+ + ++++P ++ +
Sbjct: 382 DITGNESHILDVRNDNEWNNGHLSQAVHVPHGKLLE 417
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
2.70A {Alicyclobacillus acidocaldarius subsp}
Length = 474
Score = 41.9 bits (98), Expect = 2e-04
Identities = 9/68 (13%), Positives = 30/68 (44%), Gaps = 4/68 (5%)
Query: 219 LLEGALLQRHNQALSEFCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSIN 278
+ A + R +++S ++ + + ++D+R+ +E+ + + +
Sbjct: 356 WTDPAAVDRAAPDDVASYANVSPDEV----RGALAQQGLWLLDVRNVDEWAGGHLPQAHH 411
Query: 279 IPLARIPD 286
IPL+++
Sbjct: 412 IPLSKLAA 419
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 42.1 bits (98), Expect = 2e-04
Identities = 42/251 (16%), Positives = 88/251 (35%), Gaps = 68/251 (27%)
Query: 122 FAIPWFLTM------FSHVLPLHKIFHLWDKLL--LGDASFPLFIGVSILKQ-LRETLLS 172
F I W L + + + L K+ + D D S + + + ++ LR L S
Sbjct: 182 FKIFW-LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 173 SGFNECILLFSDLPEV-DIEQSVTDSIDIYC---VTPR--SITFRMHESESTLLEGALLQ 226
+ C+L+ + V + + ++ ++ C +T R +T + + +T +
Sbjct: 241 KPYENCLLVLLN---VQNAK--AWNAFNLSCKILLTTRFKQVTDFLSAATTTHIS----- 290
Query: 227 RHNQALSEFCSSLSSTDLLDL----INTRFKK-PKV------LVIDIRDNEEYVAESIIG 275
L +L+ ++ L ++ R + P+ + SII
Sbjct: 291 -----LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL-----------SIIA 334
Query: 276 -SINIPLARIPDLESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLG 334
SI LA + + + + + E S+ V+ R+ F R V
Sbjct: 335 ESIRDGLATWDNWKHVNCDKLTTIIES--------SLNVL--EPAEYRKM-FDRLSV--- 380
Query: 335 FPKVTYVHEHV 345
FP ++ +
Sbjct: 381 FPPSAHIPTIL 391
Score = 39.8 bits (92), Expect = 0.001
Identities = 44/257 (17%), Positives = 88/257 (34%), Gaps = 54/257 (21%)
Query: 58 LNFNDEATAYAC---FSTFIPKYLHNFFLRDNSAVVREYLSK--FSHLIAFHDAE----- 107
++F Y S F ++ NF +D + + LSK H+I DA
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLR 66
Query: 108 ----LANHMSEI--NFIPELFAI--PWFLTMFSHV-----LPLHKIFHLWDKLLLGDASF 154
L + E+ F+ E+ I + ++ + D+L + F
Sbjct: 67 LFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVF 126
Query: 155 PLFIGVSILK---QLRETLLSSGFNECILLF-------SDLPEVDIEQSVTDSIDIYCVT 204
+ VS L+ +LR+ LL + +L+ + + V S + C
Sbjct: 127 AKY-NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVA-----LDVCLSYKVQCKM 180
Query: 205 PRSI---TFRMHESESTLLEG--ALLQRHNQALSEFCSSLSSTDL-LDLINTRFKK---- 254
I + S T+LE LL + + + S+ L + I ++
Sbjct: 181 DFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKS 240
Query: 255 ---PKVLVI--DIRDNE 266
L++ ++++ +
Sbjct: 241 KPYENCLLVLLNVQNAK 257
>1hzm_A Dual specificity protein phosphatase 6; hydrolase; NMR {Homo
sapiens} SCOP: c.46.1.1
Length = 154
Score = 38.6 bits (89), Expect = 0.001
Identities = 17/93 (18%), Positives = 35/93 (37%), Gaps = 6/93 (6%)
Query: 227 RHNQALSEFCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARI-- 284
R SE S + L + + ++L++D R E Y + I +IN+ + I
Sbjct: 6 RPVPFASEMAISKTVAWLNEQLELG--NERLLLMDCRPQELYESSHIESAINVAIPGIML 63
Query: 285 --PDLESTDLGSMESSPEMNILFNNKGSIIVIV 315
+ + ++ + E F + +V
Sbjct: 64 RRLQKGNLPVRALFTRGEDRDRFTRRCGTDTVV 96
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural
genomics, PSI-2, protein structure initiative; 2.00A
{Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Length = 124
Score = 37.0 bits (86), Expect = 0.002
Identities = 11/62 (17%), Positives = 25/62 (40%), Gaps = 7/62 (11%)
Query: 230 QALSEFCSSLS----STDLLDLINTRFKKPKVLVIDIRDNE-EYVAESIIGSINIPLARI 284
+ + + LS +L + K +V+D+R+ + + I G+I +P +
Sbjct: 4 KKIELLTTYLSLYIDHHTVLADMQN--ATGKYVVLDVRNAPAQVKKDQIKGAIAMPAKDL 61
Query: 285 PD 286
Sbjct: 62 AT 63
>2vsw_A Dual specificity protein phosphatase 16; hydrolase, dual
specificity phosphatase, nucleus, cytoplasm, rhodanese
domain, CAsp8; 2.20A {Homo sapiens} PDB: 3tg3_A
Length = 153
Score = 36.4 bits (83), Expect = 0.005
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARI 284
+ + + L+ L+ + KVL+ID R EY I+ +INI +++
Sbjct: 4 TQIVTERLVALLES--GTEKVLLIDSRPFVEYNTSHILEAININCSKL 49
>2ouc_A Dual specificity protein phosphatase 10; rhodanese fold, hydrolase;
2.20A {Homo sapiens}
Length = 142
Score = 35.8 bits (82), Expect = 0.006
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 9/92 (9%)
Query: 238 SLSSTDLLDLINTRFK----KPKVLVIDIRDNEEYVAESIIGSINIP-----LARIPDLE 288
+ DL + K ++ID R EY I G+++I R
Sbjct: 2 IIYPNDLAKKMTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQG 61
Query: 289 STDLGSMESSPEMNILFNNKGSIIVIVGGEDS 320
+ + S E F S +IV E++
Sbjct: 62 KITVLDLISCREGKDSFKRIFSKEIIVYDENT 93
>3ntd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; COA,
persulfide reductase, rhodanese; HET: COA FAD; 1.99A
{Shewanella loihica} PDB: 3nta_A* 3nt6_A*
Length = 565
Score = 37.2 bits (87), Expect = 0.008
Identities = 8/29 (27%), Positives = 16/29 (55%)
Query: 253 KKPKVLVIDIRDNEEYVAESIIGSINIPL 281
L++D+R+ E + G++NIP+
Sbjct: 483 LSEDQLLLDVRNPGELQNGGLEGAVNIPV 511
>3ics_A Coenzyme A-disulfide reductase; pyridine nucleotide-disulfide
oxidoreductase class I, rhodan coenzyme A, flavin
adenine dinucleotide; HET: FAD COA ADP; 1.94A {Bacillus
anthracis} PDB: 3icr_A* 3ict_A*
Length = 588
Score = 36.8 bits (86), Expect = 0.009
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 254 KPKVLVIDIRDNEEYVAESIIGSINIPLARI 284
+ +ID+R+ E I GSINIPL +
Sbjct: 501 ENGGYLIDVREPNELKQGMIKGSINIPLDEL 531
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP
binding protein, PSI, MCSG, STR genomics, protein
structure initiative; HET: PGE; 1.76A {Clostridium
difficile}
Length = 134
Score = 34.7 bits (79), Expect = 0.013
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSM 295
+++S + + K KV+ +D+R EY + I+ +IN+PL + E ++G++
Sbjct: 2 NAMSVIKIEKAL----KLDKVIFVDVRTEGEYEEDHILNAINMPL--FKNNEHNEVGTI 54
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like
domain, docking interaction, transfera hydrolase
complex; 2.71A {Homo sapiens}
Length = 158
Score = 33.5 bits (76), Expect = 0.044
Identities = 16/82 (19%), Positives = 28/82 (34%), Gaps = 5/82 (6%)
Query: 244 LLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIP-----LARIPDLESTDLGSMESS 298
+ + ++ID R EY I G+++I R + + S
Sbjct: 22 MTKCSKSHLPSQGPVIIDCRPFMEYNKSHIQGAVHINCADKISRRRLQQGKITVLDLISC 81
Query: 299 PEMNILFNNKGSIIVIVGGEDS 320
E F S +IV E++
Sbjct: 82 REGKDSFKRIFSKEIIVYDENT 103
>1rm6_B 4-hydroxybenzoyl-COA reductase beta subunit; xanthine oxidase
family, dimer heterotrimers, oxidoreductase; HET: PCD
FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: d.87.2.1
d.145.1.3 PDB: 1sb3_B*
Length = 324
Score = 31.3 bits (71), Expect = 0.52
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 4/54 (7%)
Query: 242 TDLLDLINTRFKKPKVLVIDIRDNEE--YVAESIIGSINI-PLARIPDLESTDL 292
TDLL + P LV D+ + ++ GS+ I A + + D
Sbjct: 34 TDLLPNLRRGLGHPAALV-DLTGIDGLATISTLADGSLRIGAGATLEAIAEHDA 86
>2wlr_A Putative thiosulfate sulfurtransferase YNJE; rhodanese domains;
HET: EPE; 1.45A {Escherichia coli} PDB: 2wlx_A* 3ipo_A*
3ipp_A
Length = 423
Score = 30.1 bits (68), Expect = 1.3
Identities = 14/110 (12%), Positives = 37/110 (33%), Gaps = 17/110 (15%)
Query: 239 LSSTDLLDLINT-RFKKPKVLVIDIRDNEEYVAES---------IIGSINIPLARIPDLE 288
++S +L + + ++ ID R + Y + ++N+ + + +
Sbjct: 1 MASAELAKPLTLDQLQQQNGKAIDTRPSAFYNGWPQTLNGPSGHELAALNLSASWLDKMS 60
Query: 289 STDLGSMESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKV 338
+ L + N+ + + + G D A R + G +
Sbjct: 61 TEQLNAWIKQ--HNL---KTDAPVALYGN-DKDVDAVKTRL-QKAGLTHI 103
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.8 bits (63), Expect = 1.6
Identities = 6/29 (20%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 284 IPDLEST-DLGSMESSPEMNILFNNKGSI 311
+ L+++ L + +S+P + I K ++
Sbjct: 22 LKKLQASLKLYADDSAPALAI----KATM 46
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer
complex, cytochrome BC1 complex,
mitochondrialtransmembrane complex; HET: M3L SUC 6PH
UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces
cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H*
1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Length = 93
Score = 27.5 bits (61), Expect = 2.4
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 1 MFCYFGFNLCHQYNELLSSKTGHTKLKRV 29
++ + ++YNE L SK G +L+RV
Sbjct: 63 GIYWYWWKNGNEYNEFLYSKAGREELERV 91
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller,
EGF-like, structural protein; 2.30A {Mus musculus} SCOP:
b.68.5.1
Length = 267
Score = 28.6 bits (64), Expect = 2.5
Identities = 6/44 (13%), Positives = 12/44 (27%)
Query: 235 FCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSIN 278
S + T+ L P L D ++ ++
Sbjct: 149 ETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAE 192
>2eg4_A Probable thiosulfate sulfurtransferase; structural genomics,
NPPSFA, national Pro protein structural and functional
analyses; 1.70A {Thermus thermophilus} PDB: 2eg3_A
Length = 230
Score = 28.7 bits (65), Expect = 2.6
Identities = 6/44 (13%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
Query: 257 VLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPE 300
+++D R Y A + G+ ++ L+ + +++
Sbjct: 7 AVLVDTRPRPAYEAGHLPGARHLDLSAPKL-RLREEAELKALEG 49
>1e6y_A Methyl-coenzyme M reductase subunit alpha; biological
methanogenesis, NI-enzyme, oxidoreductase, NI ENZ; HET:
MHS AGM F43 TP7; 1.6A {Methanosarcina barkeri} SCOP:
a.89.1.1 d.58.31.2
Length = 569
Score = 29.1 bits (65), Expect = 2.8
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 23/116 (19%)
Query: 203 VTPRSITFRMHESESTLLEGALLQRH----NQALSEFCSSLSST---DLLDLINTRFKKP 255
VTP +I + + A++Q + AL + C T L D I+ +F
Sbjct: 137 VTPETINHYLEVLNHAMPGAAVVQEMMVETHPALVDDCYVKVFTGDDALADEIDKQF--- 193
Query: 256 KVLVIDIRDNEEYVAESI------IGSINIPLARIPDL--ESTDLGSMESSPEMNI 303
+IDI N+E+ E IG + IP + +TD M I
Sbjct: 194 ---LIDI--NKEFSEEQAAQIKASIGKTSWQAIHIPTIVSRTTDGAQTSRWAAMQI 244
>1hbn_A Methyl-coenzyme M reductase I alpha subunit; methanogenesis,
biological methanogenesis, NI-enzyme, oxidoreductase;
HET: MHS AGM MGN F43 TP7; 1.16A
{Methanothermobacterthermautotrophicus} SCOP: a.89.1.1
d.58.31.2 PDB: 1hbm_A* 1hbo_A* 1hbu_A* 3m1v_A* 3m2r_A*
3m2u_A* 3m2v_A* 3m30_A* 3m32_A* 3pot_A* 1mro_A* 1e6v_A*
Length = 549
Score = 28.7 bits (64), Expect = 3.1
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 23/116 (19%)
Query: 203 VTPRSITFRMHESESTLLEGALLQRH----NQALSEFCSSLSST---DLLDLINTRFKKP 255
VTP +IT + + A++Q H + AL T ++ D I+ F
Sbjct: 123 VTPETITHYLETVNHAMPGAAVVQEHMVETHPALVADSYVKVFTGNDEIADEIDPAF--- 179
Query: 256 KVLVIDIRDNEEYVAESI------IGSINIPLARIPDL--ESTDLGSMESSPEMNI 303
VIDI N+++ + +G + RIP + + D + M I
Sbjct: 180 ---VIDI--NKQFPEDQAETLKAEVGDGIWQVVRIPTIVSRTCDGATTSRWSAMQI 230
>1e0c_A Rhodanese, sulfurtransferase; sulfur metabolism,
thiosulfate:cyanide sulfurtransferase; 1.8A {Azotobacter
vinelandii} SCOP: c.46.1.2 c.46.1.2 PDB: 1h4k_X 1h4m_X
Length = 271
Score = 28.3 bits (64), Expect = 3.8
Identities = 7/40 (17%), Positives = 16/40 (40%)
Query: 251 RFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLEST 290
R P+++++D+ Y I G+ + R +
Sbjct: 19 RLSAPELILVDLTSAARYAEGHIPGARFVDPKRTQLGQPP 58
>1bt3_A Protein (catechol oxidase); dicopper enzyme, oxidoreductase; 2.50A
{Ipomoea batatas} SCOP: a.86.1.2 PDB: 1bt2_A 1bt1_A
1bug_A*
Length = 345
Score = 28.0 bits (61), Expect = 4.9
Identities = 9/39 (23%), Positives = 16/39 (41%)
Query: 23 HTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPFVFLNFN 61
H+ + R+ W + + D L A F+F + N
Sbjct: 274 HSNVDRMWTIWQQLAGKPRKRDYTDSDWLNATFLFYDEN 312
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.325 0.140 0.428
Gapped
Lambda K H
0.267 0.0490 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,508,199
Number of extensions: 328656
Number of successful extensions: 994
Number of sequences better than 10.0: 1
Number of HSP's gapped: 972
Number of HSP's successfully gapped: 66
Length of query: 360
Length of database: 6,701,793
Length adjustment: 95
Effective length of query: 265
Effective length of database: 4,049,298
Effective search space: 1073063970
Effective search space used: 1073063970
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 58 (26.7 bits)