RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3426
(360 letters)
>d1fkma2 a.69.2.1 (A:443-630) Ypt/Rab-GAP domain of gyp1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 188
Score = 64.4 bits (156), Expect = 5e-13
Identities = 18/146 (12%), Positives = 37/146 (25%), Gaps = 5/146 (3%)
Query: 90 VREYLSKFSHLIAFHDAELANHMSEINFIPELFAIPWFLTMFSHVLPLHKIFHLWDKLLL 149
+ + S L+ DA+L NH + FA W + + + +WD L
Sbjct: 5 ILRQVKNLSQLVKRIDADLYNHFQNEHVEFIQFAFRWMNCLLMREFQMGTVIRMWDTYLS 64
Query: 150 GDASFPLFIGVSILKQLRETLLSSGFNECILLFSDLPEVDIEQSVTDSIDIYCVTPRSIT 209
+ ++ + + + + S
Sbjct: 65 ETSQEVTSSYSMSSNDIKPPVTPTEPRVASFVTPTKDFQSPTTA--LSNMTPNNAVEDSG 122
Query: 210 FRMHESESTLLEG---ALLQRHNQAL 232
S + A L + + L
Sbjct: 123 KMRQSSLNEFHVFVCAAFLIKWSDQL 148
>d2gwfa1 c.46.1.4 (A:181-315) Ubiquitin carboxyl-terminal hydrolase
8, USP8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 135
Score = 48.7 bits (115), Expect = 8e-08
Identities = 11/95 (11%), Positives = 37/95 (38%), Gaps = 4/95 (4%)
Query: 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMES 297
++++ +L ++ K ++++D R ++Y I+ S+++P I +
Sbjct: 2 AITAKELYTMMTD--KNISLIIMDARRMQDYQDSCILHSLSVPEEAISPGVTASWIEAHL 59
Query: 298 SPEMNILFN--NKGSIIVIVGGEDSMRQAKFARFI 330
+ + +V++ S + + +
Sbjct: 60 PDDSKDTWKKRGNVEYVVLLDWFSSAKDLQIGTTL 94
>d1c25a_ c.46.1.1 (A:) CDC25a {Human (Homo sapiens) [TaxId: 9606]}
Length = 161
Score = 43.2 bits (101), Expect = 8e-06
Identities = 19/109 (17%), Positives = 38/109 (34%), Gaps = 10/109 (9%)
Query: 238 SLSSTDLLDLINTRFKKP--KVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSM 295
+S + ++N +F + ++ID R EY I G++N+ +
Sbjct: 24 YISPEIMASVLNGKFANLIKEFVIIDCRYPYEYEGGHIKGAVNLH--------MEEEVED 75
Query: 296 ESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEH 344
+ + + K I+V S R + R++ Y H
Sbjct: 76 FLLKKPIVPTDGKRVIVVFHCEFSSERGPRMCRYVRERDRLGNEYPKLH 124
>d1ymka1 c.46.1.1 (A:377-550) CDC25b {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 41.3 bits (96), Expect = 5e-05
Identities = 24/123 (19%), Positives = 44/123 (35%), Gaps = 19/123 (15%)
Query: 238 SLSSTDLLDLINTRFK--KPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSM 295
+S ++ L+ +F K +++D R EY I ++N+PL D S
Sbjct: 24 YISPETMVALLTGKFSNIVDKFVIVDCRYPYEYEGGHIKTAVNLPL-------ERDAESF 76
Query: 296 ESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIV----------RLGFPKVTYVHEHV 345
+ +K I++ S R + RFI L +P++ +
Sbjct: 77 LLKSPIAPCSLDKRVILIFHCEFSSERGPRMCRFIRERDRAVNDYPSLYYPEMYILKGGY 136
Query: 346 NSF 348
F
Sbjct: 137 KEF 139
>d1fkma1 a.69.2.1 (A:249-442) Ypt/Rab-GAP domain of gyp1p {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 39.9 bits (92), Expect = 2e-04
Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 29/99 (29%)
Query: 10 CHQYNELLSSKTGHTKLKRVLKAWVTSHPQFDFVYWQGLDSLCAPF--VFLN-------- 59
+ + L K+ L+R+L W HP Y QG++ L PF FL
Sbjct: 96 TNPHIPLYQFKSVQNSLQRILYLWAIRHP--ASGYVQGINDLVTPFFETFLTEYLPPSQI 153
Query: 60 -----------------FNDEATAYACFSTFIPKYLHNF 81
+ EA + C + + + N+
Sbjct: 154 DDVEIKDPSTYMVDEQITDLEADTFWCLTKLLEQITDNY 192
>d1tq1a_ c.46.1.3 (A:) Thiosulfate
sulfurtransferase/Senescence-associated protein {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 119
Score = 37.2 bits (85), Expect = 5e-04
Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 9/105 (8%)
Query: 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSME 296
SS+S T DL+ + +D+R EE+ G+IN+P S
Sbjct: 8 SSVSVTVAHDLLLAGHR-----YLDVRTPEEFSQGHACGAINVPYMNRGA----SGMSKN 58
Query: 297 SSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYV 341
+ + + S +IVG + R K ++ GF V +
Sbjct: 59 TDFLEQVSSHFGQSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDI 103
>d1gmxa_ c.46.1.3 (A:) Sulfurtransferase GlpE {Escherichia coli
[TaxId: 562]}
Length = 108
Score = 35.5 bits (81), Expect = 0.002
Identities = 9/104 (8%), Positives = 33/104 (31%), Gaps = 20/104 (19%)
Query: 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMES 297
++ D + + + +++DIRD + + + + ++ +
Sbjct: 6 CINVADAHQKLQ----EKEAVLVDIRDPQSFAMGHAVQAFHLTNDTLGAFM-----RDND 56
Query: 298 SPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYV 341
++ G A+++++ G+ V +
Sbjct: 57 FDTPVMVMCYHG-----------NSSKGAAQYLLQQGYDVVYSI 89
>d1hzma_ c.46.1.1 (A:) Erk2 binding domain of Mapk phosphatase mkp-3
{Human (Homo sapiens) [TaxId: 9606]}
Length = 154
Score = 34.4 bits (78), Expect = 0.008
Identities = 12/52 (23%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
Query: 230 QALSEFCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPL 281
SE S + L + + ++L++D R E Y + I +IN+ +
Sbjct: 9 PFASEMAISKTVAWLNEQLELG--NERLLLMDCRPQELYESSHIESAINVAI 58
>d1okga2 c.46.1.2 (A:163-301) 3-mercaptopyruvate sulfurtransferase
{Leishmania major [TaxId: 5664]}
Length = 139
Score = 32.9 bits (74), Expect = 0.025
Identities = 11/104 (10%), Positives = 24/104 (23%), Gaps = 18/104 (17%)
Query: 254 KPKVLVIDIRDNEEY-----------VAESIIGSINIPLARIPDLESTDLGSM---ESSP 299
P+ ++ D R + + + I G+ N+P E
Sbjct: 10 PPQAIITDARSADRFASTVRPYAADKMPGHIEGARNLPYTSHLVTRGDGKVLRSEEEIRH 69
Query: 300 EMNILFNNKGSII----VIVGGEDSMRQAKFARFIVRLGFPKVT 339
+ + G + + + LG
Sbjct: 70 NIMTVVQGAGDAADLSSFVFSCGSGVTACINIALVHHLGLGHPY 113
>d1uara2 c.46.1.2 (A:145-285) Sulfurtransferase {Thermus
thermophilus [TaxId: 274]}
Length = 141
Score = 32.5 bits (73), Expect = 0.029
Identities = 26/112 (23%), Positives = 42/112 (37%), Gaps = 17/112 (15%)
Query: 243 DLLDLINTRFKKPKVLVIDIRDNEEYVAE----------------SIIGSINIPLARIPD 286
D+L+ I + K+ K ++D+R +EY E I G+ NIP A+ +
Sbjct: 8 DVLEHII-KVKEGKGALVDVRSPQEYRGELTHMPDYPQEGALRAGHIPGAKNIPWAKAVN 66
Query: 287 LESTDLGSMESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKV 338
+ T + E L K IV+ + LG+P V
Sbjct: 67 PDGTFKSAEELRALYEPLGITKDKDIVVYCRIAERSSHSWFVLKYLLGYPHV 118
>d4pgaa_ c.88.1.1 (A:) Glutaminase-asparaginase {Pseudomonas sp., 7A
[TaxId: 306]}
Length = 330
Score = 31.3 bits (70), Expect = 0.15
Identities = 18/115 (15%), Positives = 38/115 (33%), Gaps = 30/115 (26%)
Query: 253 KKPKVLVI-----------DIRDNEEYVA-----ESIIGSINIPLARIPDLESTDLGSME 296
K V+++ ++ Y A + +I + LA + ++ + +
Sbjct: 1 KLANVVILATGGTIAGAGASAANSATYQAAKVGVDKLIAGVP-ELADLANVRGEQVMQIA 59
Query: 297 SS------------PEMNILFNNKGSIIVIVGGEDSMRQ-AKFARFIVRLGFPKV 338
S + +N IVI G D++ + A F + + P V
Sbjct: 60 SESITNDDLLKLGKRVAELADSNDVDGIVITHGTDTLEETAYFLNLVQKTDKPIV 114
>d1yt8a2 c.46.1.2 (A:6-106) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 101
Score = 28.8 bits (63), Expect = 0.31
Identities = 10/96 (10%), Positives = 31/96 (32%), Gaps = 14/96 (14%)
Query: 246 DLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPLARIPDLESTDLGSMESSPEMNILF 305
D+ + ++ ++D+R+ + + + + N+P +
Sbjct: 8 DIRAALLARRELALLDVREEDPFAQAHPLFAANLP--------------LSRLELEIHAR 53
Query: 306 NNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYV 341
+ + V + A+ + LG+ V +
Sbjct: 54 VPRRDTPITVYDDGEGLAPVAAQRLHDLGYSDVALL 89
>d1uara1 c.46.1.2 (A:2-144) Sulfurtransferase {Thermus thermophilus
[TaxId: 274]}
Length = 143
Score = 29.5 bits (65), Expect = 0.37
Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 6/105 (5%)
Query: 237 SSLSSTDLLDLINTRFKKPKVLVIDIRDN-EEYVAESIIGSINIPLARIPDLESTDLGSM 295
L STD + + PKV V+++ ++ Y I G+ I R
Sbjct: 6 EVLVSTDWV---QEHLEDPKVRVLEVDEDILLYDTGHIPGAQKIDWQRDFWDPVVRDFIS 62
Query: 296 ESSPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVR--LGFPKV 338
E + + +V D F G V
Sbjct: 63 EEEFAKLMERLGISNDTTVVLYGDKNNWWAAYAFWFFKYNGHKDV 107
>d1e0ca2 c.46.1.2 (A:136-271) Sulfurtransferase {Azotobacter
vinelandii [TaxId: 354]}
Length = 136
Score = 29.1 bits (64), Expect = 0.39
Identities = 19/101 (18%), Positives = 30/101 (29%), Gaps = 9/101 (8%)
Query: 246 DLINTRFKKPKVLVIDIRDNEEYVAE--------SIIGSINIPLARIPDLESTDLGSMES 297
D + R + + D R +EY E I G++N D +
Sbjct: 17 DYLLGRLGAADLAIWDARSPQEYRGEKVLAAKGGHIPGAVNFEWTAAMDPSRALRIRTDI 76
Query: 298 SPEMNILFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKV 338
+ + L IV R LG+P+V
Sbjct: 77 AGRLEELGITPDKEIVTHCQ-THHRSGLTYLIAKALGYPRV 116
>d1qxna_ c.46.1.3 (A:) Polysulfide-sulfur transferase (sulfide
dehydrogenase, Sud) {Wolinella succinogenes [TaxId:
844]}
Length = 137
Score = 28.7 bits (63), Expect = 0.59
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 3/31 (9%)
Query: 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEY 268
LS D L+ + P + +ID+RD +E
Sbjct: 24 MLSPKDAYKLLQ---ENPDITLIDVRDPDEL 51
>d1yt8a1 c.46.1.2 (A:107-242) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 136
Score = 28.3 bits (62), Expect = 0.76
Identities = 13/44 (29%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Query: 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSINIPL 281
SL++ ++ L++ R + +++D R +EY SI G I++P
Sbjct: 25 SLAAEEVQALLDAR---AEAVILDARRFDEYQTMSIPGGISVPG 65
>d1e6ya2 d.58.31.2 (A:1002-1283) Alpha chain {Archaeon
Methanosarcina barkeri [TaxId: 2208]}
Length = 282
Score = 29.2 bits (65), Expect = 0.78
Identities = 28/116 (24%), Positives = 43/116 (37%), Gaps = 23/116 (19%)
Query: 203 VTPRSITFRMHESESTLLEGALLQRH----NQALSEFCSSLSST---DLLDLINTRFKKP 255
VTP +I + + A++Q + AL + C T L D I+ +F
Sbjct: 137 VTPETINHYLEVLNHAMPGAAVVQEMMVETHPALVDDCYVKVFTGDDALADEIDKQF--- 193
Query: 256 KVLVIDIRDNEEYVAESI------IGSINIPLARIPDL--ESTDLGSMESSPEMNI 303
+IDI N+E+ E IG + IP + +TD M I
Sbjct: 194 ---LIDI--NKEFSEEQAAQIKASIGKTSWQAIHIPTIVSRTTDGAQTSRWAAMQI 244
>d1hbna2 d.58.31.2 (A:2-269) Alpha chain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 268
Score = 28.7 bits (64), Expect = 0.98
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 23/116 (19%)
Query: 203 VTPRSITFRMHESESTLLEGALLQRH----NQALSEFCSSLSST---DLLDLINTRFKKP 255
VTP +IT + + A++Q H + AL T ++ D I+ F
Sbjct: 123 VTPETITHYLETVNHAMPGAAVVQEHMVETHPALVADSYVKVFTGNDEIADEIDPAF--- 179
Query: 256 KVLVIDIRDNEEYVAESI------IGSINIPLARIPDL--ESTDLGSMESSPEMNI 303
VIDI N+++ + +G + RIP + + D + M I
Sbjct: 180 ---VIDI--NKQFPEDQAETLKAEVGDGIWQVVRIPTIVSRTCDGATTSRWSAMQI 230
>d1e6va2 d.58.31.2 (A:8-272) Alpha chain {Archaeon Methanopyrus
kandleri [TaxId: 2320]}
Length = 265
Score = 28.7 bits (64), Expect = 1.1
Identities = 29/116 (25%), Positives = 46/116 (39%), Gaps = 23/116 (19%)
Query: 203 VTPRSITFRMHESESTLLEGALLQRH----NQALSEFCSSLSST---DLLDLINTRFKKP 255
VTP +I M L GA++Q H + L+ C + T +L D I+ +F
Sbjct: 120 VTPETINEYMETLNHALPGGAVVQEHMVEIHPGLTWDCYAKIITGDLELADEIDDKF--- 176
Query: 256 KVLVIDIRDNEEYVAESI------IGSINIPLARIPDL--ESTDLGSMESSPEMNI 303
+IDI + + E IG+ + R+P + D +M M I
Sbjct: 177 ---LIDI--EKLFPEEQAEQLIKAIGNRTYQVCRMPTIVGHVCDGATMYRWAAMQI 227
>d1wsaa_ c.88.1.1 (A:) Asparaginase type II {Wolinella succinogenes
[TaxId: 844]}
Length = 328
Score = 28.6 bits (63), Expect = 1.1
Identities = 14/95 (14%), Positives = 34/95 (35%), Gaps = 28/95 (29%)
Query: 254 KPKVLVI----------DIRDNEEYVA-----ESIIGSINIPLARIPDLESTDLGSMESS 298
KP+V ++ + Y A + ++ ++ + + ++ + S+ S
Sbjct: 1 KPQVTILATGGTIAGSGESSVKSSYSAGAVTVDKLLAAVPA-INDLATIKGEQISSIGSQ 59
Query: 299 -----------PEMNILFNNKGSI-IVIVGGEDSM 321
+N L K + ++I G D+M
Sbjct: 60 EMTGKVWLKLAKRVNELLAQKETEAVIITHGTDTM 94
>d1oe1a2 b.6.1.3 (A:160-336) Nitrite reductase, NIR {Alcaligenes
xylosoxidans [TaxId: 85698]}
Length = 177
Score = 26.7 bits (59), Expect = 3.0
Identities = 13/76 (17%), Positives = 22/76 (28%), Gaps = 21/76 (27%)
Query: 37 HPQFDFVYWQGLDSLCAPFVFLNFNDEATAYACFSTFIPKYLHNFFLRDNSAVVREYLSK 96
D+V+ G F + + L +F+R SA Y K
Sbjct: 93 GGHGDWVWETG-----------KFANPPQ----------RDLETWFIRGGSAGAALYTFK 131
Query: 97 FSHLIAFHDAELANHM 112
+ A+ + L
Sbjct: 132 QPGVYAYLNHNLIEAF 147
>d3cx5h1 f.23.13.1 (H:2-94) Ubiquinone-binding protein QP-C of
cytochrome bc1 complex (Ubiquinol-cytochrome c
reductase) {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 93
Score = 25.5 bits (56), Expect = 4.8
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 4 YFGFNLCHQYNELLSSKTGHTKLKRV 29
++ + ++YNE L SK G +L+RV
Sbjct: 66 WYWWKNGNEYNEFLYSKAGREELERV 91
>d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 241
Score = 26.5 bits (57), Expect = 5.3
Identities = 12/107 (11%), Positives = 35/107 (32%), Gaps = 7/107 (6%)
Query: 175 FNECILLFSDLPEVDIEQSVTDSIDIYCVTPRSITFRMHESESTLLEG---ALLQRHNQA 231
+ + + D I TP + R++ +G L++ +
Sbjct: 133 WTIYQDWHDWMNNQFGQSLELDGIIYLQATPETCLHRIYLRGRNEEQGIPLEYLEKLHYK 192
Query: 232 LSEFCSSLSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAESIIGSIN 278
+ + D + + +L +D+ ++ + ES++ +
Sbjct: 193 HESWLLHRTLKTNFDYLQ----EVPILTLDVNEDFKDKYESLVEKVK 235
>d1yt8a3 c.46.1.2 (A:373-529) Thiosulfate sulfurtransferase PA2603
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 157
Score = 26.1 bits (56), Expect = 5.4
Identities = 7/31 (22%), Positives = 13/31 (41%), Gaps = 4/31 (12%)
Query: 238 SLSSTDLLDLINTRFKKPKVLVIDIRDNEEY 268
++ T L D + +P V+D + Y
Sbjct: 6 TIDPTTLADWLG----EPGTRVLDFTASANY 32
>d2dexx3 d.126.1.5 (X:294-663) Peptidylarginine deiminase Pad4,
catalytic C-terminal domain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 370
Score = 26.6 bits (59), Expect = 5.7
Identities = 9/39 (23%), Positives = 20/39 (51%)
Query: 146 KLLLGDASFPLFIGVSILKQLRETLLSSGFNECILLFSD 184
++L GD+ +P + + L++ L + + L+SD
Sbjct: 134 RILFGDSCYPSNDSRQMHQALQDFLSAQQVQAPVKLYSD 172
>d1urha2 c.46.1.2 (A:149-268) 3-mercaptopyruvate sulfurtransferase
{Escherichia coli [TaxId: 562]}
Length = 120
Score = 25.3 bits (54), Expect = 6.0
Identities = 17/109 (15%), Positives = 31/109 (28%), Gaps = 13/109 (11%)
Query: 239 LSSTDLLDLINTRFKKPKVLVIDIRDNEEYVAE-----SIIGSINIPLARIPDLESTDLG 293
+ TD+L + + +ID R + AE + +IP A
Sbjct: 6 VKVTDVLLASH----ENTAQIIDARPAARFNAEVDEPRPGLRRGHIPGALNVPWTELVRE 61
Query: 294 SMESSPEMNILFNNKGSI----IVIVGGEDSMRQAKFARFIVRLGFPKV 338
+ + + +IV + A + L P V
Sbjct: 62 GELKTTDELDAIFFGRGVSYDKPIIVSCGSGVTAAVVLLALATLDVPNV 110
>d1ytla1 c.31.1.6 (A:17-174) Acetyl-CoA decarbonylase/synthase
complex epsilon subunit 2, ACDE2 {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 158
Score = 25.7 bits (56), Expect = 7.5
Identities = 7/56 (12%), Positives = 16/56 (28%), Gaps = 1/56 (1%)
Query: 304 LFNNKGSIIVIVGGEDSMRQAKFARFIVRLGFPKVTYVHEHVNSFECYGVLGPGIP 359
+ ++IVG + + + + V V + F G+
Sbjct: 15 MIKKAKRPLLIVGPDMTDEMFERVKKFVEKDIT-VVATGSAITRFIDAGLGEKVNY 69
>d1pp7u_ a.4.5.44 (U:) 39 kda initiator binding protein, IBP39,
N-terminal domain {Trichomonas vaginalis [TaxId: 5722]}
Length = 114
Score = 25.1 bits (55), Expect = 8.0
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 3/32 (9%)
Query: 68 ACFSTFIPKYLHNFFLRDNSAVVREYLSKFSH 99
A F++ +P + R +S S+F
Sbjct: 4 ASFTSRLPPEIVAALKRKSSRDPN---SRFPR 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.325 0.140 0.428
Gapped
Lambda K H
0.267 0.0504 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,347,765
Number of extensions: 62693
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 32
Length of query: 360
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 274
Effective length of database: 1,226,816
Effective search space: 336147584
Effective search space used: 336147584
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 53 (24.7 bits)