RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3428
(682 letters)
>gnl|CDD|187700 cd09276, Rnase_HI_RT_non_LTR, non-LTR RNase HI domain of reverse
transcriptases. Ribonuclease H (RNase H) is classified
into two families, type 1 (prokaryotic RNase HI,
eukaryotic RNase H1 and viral RNase H) and type 2
(prokaryotic RNase HII and HIII, and eukaryotic RNase
H2). Ribonuclease HI (RNase HI) is an endonuclease that
cleaves the RNA strand of an RNA/DNA hybrid in a
sequence non-specific manner. RNase H is widely present
in various organisms, including bacteria, archaea and
eukaryotes. RNase HI has also been observed as an
adjunct domain to the reverse transcriptase gene in
retroviruses, long-term repeat (LTR)-bearing
retrotransposons and non-LTR retrotransposons. RNase HI
in LTR retrotransposons perform degradation of the
original RNA template, generation of a polypurine tract
(the primer for plus-strand DNA synthesis), and final
removal of RNA primers from newly synthesized minus and
plus strands. The catalytic residues for RNase H
enzymatic activity, three aspartatic acids and one
glutamatic acid residue (DEDD), are unvaried across all
RNase H domains. The position of the RNase domain of
non-LTR and LTR transposons is at the carboxyl terminal
of the reverse transcriptase (RT) domain and their RNase
domains group together, indicating a common evolutionary
origin. Many non-LTR transposons have lost the RNase
domain because their activity is at the nucleus and
cellular RNase may suffice; however LTR retotransposons
always encode their own RNase domain because it requires
RNase activity in RNA-protein particles in the
cytoplasm. RNase H inhibitors have been explored as an
anti-HIV drug target because RNase H inactivation
inhibits reverse transcription.
Length = 128
Score = 116 bits (292), Expect = 1e-30
Identities = 44/124 (35%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 330 ICYTDGSKTPTTTGCAYSV---GNVVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSG-- 384
+ YTDGSK TG +++ G + RS L P S+F AEL+AI L+ L
Sbjct: 1 VIYTDGSKLEGRTGAGFAIVRKGTISRSYKLGPYCSVFDAELLAILEALQLALREGRRAR 60
Query: 385 KFLIVTDSRSSLAALSNVRFINPLITKVYSTWSYLKLCKKDITFMWCPSHCGIKGNEIVD 444
K I +DS+++L AL + R +PL+ ++ L + W P H GI+GNE D
Sbjct: 61 KITIFSDSQAALKALRSPRSSSPLVLRIRKAIRELANHGVKVRLHWVPGHSGIEGNERAD 120
Query: 445 VAAK 448
AK
Sbjct: 121 RLAK 124
Score = 52.6 bits (127), Expect = 2e-08
Identities = 11/25 (44%), Positives = 13/25 (52%)
Query: 499 KDITFMWCPSHCGIKGNELVDVAAK 523
+ W P H GI+GNE D AK
Sbjct: 100 VKVRLHWVPGHSGIEGNERADRLAK 124
>gnl|CDD|215695 pfam00075, RNase_H, RNase H. RNase H digests the RNA strand of an
RNA/DNA hybrid. Important enzyme in retroviral
replication cycle, and often found as a domain
associated with reverse transcriptases. Structure is a
mixed alpha+beta fold with three a/b/a layers.
Length = 126
Score = 78.1 bits (193), Expect = 3e-17
Identities = 38/125 (30%), Positives = 49/125 (39%), Gaps = 9/125 (7%)
Query: 328 HTICYTDGS--KTPTTTGCAYSV-GNVVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSG 384
YTDGS P G Y G RS L P + AEL+A+ +EA+
Sbjct: 3 AVTVYTDGSCNGNPGPGGAGYVTDGGKQRSKPL-PGTTNQRAELLAL---IEALEALSGQ 58
Query: 385 KFLIVTDSRSSL-AALSNVRFINPLITKVYSTWSYLKLCKKDITFMWCPSHCGIKGNEIV 443
K I TDS+ + + + W L K + W P H GI GNE+
Sbjct: 59 KVNIYTDSQYVIGGITNGWPTKSESKPIKNEIW-ELLQKKHKVYIQWVPGHSGIPGNELA 117
Query: 444 DVAAK 448
D AK
Sbjct: 118 DKLAK 122
Score = 46.5 bits (111), Expect = 3e-06
Identities = 17/47 (36%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 483 NVPNTNKLKTIRPSI------KKDITFMWCPSHCGIKGNELVDVAAK 523
P ++ K I+ I K + W P H GI GNEL D AK
Sbjct: 76 GWPTKSESKPIKNEIWELLQKKHKVYIQWVPGHSGIPGNELADKLAK 122
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family. Emg1 and Nop14 are novel
proteins whose interaction is required for the
maturation of the 18S rRNA and for 40S ribosome
production.
Length = 809
Score = 69.3 bits (170), Expect = 3e-12
Identities = 27/54 (50%), Positives = 46/54 (85%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ EEEE+ ++E+EE+++++ EEEEE+V +EEE+EE+E+ ++E++EEEEEEE
Sbjct: 322 DEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEE 375
Score = 69.3 bits (170), Expect = 4e-12
Identities = 32/84 (38%), Positives = 58/84 (69%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
D D+ P ++ L + E EEEEE+ ++E+EE+++++ EEEEE + +EEE+EE+
Sbjct: 301 DLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEED 360
Query: 639 EEEEEEEEEEEEEEVRGGGKEEIS 662
E+ ++E++EEEEEE + K++ +
Sbjct: 361 EDSDDEDDEEEEEEEKEKKKKKSA 384
Score = 67.7 bits (166), Expect = 1e-11
Identities = 26/68 (38%), Positives = 47/68 (69%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E+ ++E+EE+++++ EEEEE+ + EEE+EE+E+ ++E++EEEEEEE+E+
Sbjct: 319 GEEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEK 378
Query: 653 VRGGGKEE 660
+ E
Sbjct: 379 KKKKSAES 386
Score = 62.3 bits (152), Expect = 5e-10
Identities = 23/61 (37%), Positives = 48/61 (78%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++E+EE+++++ EEEEE+ + +EE EE+E+ ++E++EEEEEEE+E+++++ + E
Sbjct: 331 DDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Query: 661 I 661
+
Sbjct: 391 L 391
Score = 61.6 bits (150), Expect = 9e-10
Identities = 24/67 (35%), Positives = 48/67 (71%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E ++E+EE+++++ EEEEE+ + + +E+EE+E+ ++E++EEEEEEE+E+++ +
Sbjct: 327 EDGVDDEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAES 386
Query: 659 EEISLHF 665
L F
Sbjct: 387 TRSELPF 393
Score = 59.2 bits (144), Expect = 6e-09
Identities = 24/57 (42%), Positives = 45/57 (78%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E EE+++++ EEEEE+ + +EEE+EE ++ ++E++EEEEEEE+E+++++ E R
Sbjct: 332 DEDEEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTR 388
Score = 57.7 bits (140), Expect = 2e-08
Identities = 27/84 (32%), Positives = 46/84 (54%), Gaps = 20/84 (23%)
Query: 597 RGEREEEEEEEEE--------------------EEEEEEEEEEEEEEEEVQEEEEEEEEE 636
RGE E++EEEE+ + EE+EEEEE+ + ++EE+++++
Sbjct: 283 RGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEEDDDDDL 342
Query: 637 EEEEEEEEEEEEEEEEVRGGGKEE 660
EEEEE+ + +EEE+E +E
Sbjct: 343 EEEEEDVDLSDEEEDEEDEDSDDE 366
Score = 53.9 bits (130), Expect = 2e-07
Identities = 22/55 (40%), Positives = 41/55 (74%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E ++++ EEEEE+ + +EEE+EE+E+ +E++EEEEEEE+E+++++ E
Sbjct: 335 EEDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRS 389
Score = 51.5 bits (124), Expect = 1e-06
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+RR EEE++EEEE+ +E ++ ++E E + + + EE+EEEEE+ ++E+EE
Sbjct: 279 LRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDEDEE 336
Score = 50.0 bits (120), Expect = 3e-06
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ EEEEE+ + +EEE+EE+E+ ++E EEEEEEE+E+++++ E E
Sbjct: 339 DDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 49.6 bits (119), Expect = 5e-06
Identities = 26/94 (27%), Positives = 44/94 (46%), Gaps = 31/94 (32%)
Query: 601 EEEEEEEEEE-----EEE-------EEEEEEEEEEEEVQEE------------------- 629
EEE +EE E E E EEE++EEEE+ + +
Sbjct: 260 EEELAKEEAERLKKLEAERLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQG 319
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EE+EEEEE+ ++E+EE+++++ ++S
Sbjct: 320 EEDEEEEEDGVDDEDEEDDDDDLEEEEEDVDLSD 353
Score = 48.1 bits (115), Expect = 1e-05
Identities = 19/56 (33%), Positives = 36/56 (64%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R R EEE++EEEE+ +E ++ ++E ++++ + EE+EEEEE+ ++E
Sbjct: 278 RLRRMRGEEEDDEEEEDSKESADDLDDEFEPDDDDNFGLGQGEEDEEEEEDGVDDE 333
Score = 34.2 bits (79), Expect = 0.30
Identities = 11/57 (19%), Positives = 32/57 (56%), Gaps = 2/57 (3%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E +++++ ++++ ++++ ++ E++EE+EEE+ E R K+E+
Sbjct: 124 SEIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPE--RKKSKKEV 178
Score = 33.8 bits (78), Expect = 0.35
Identities = 8/47 (17%), Positives = 28/47 (59%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E +++++ ++++ ++++ + ++ E++EE+EEE+ E
Sbjct: 124 SEIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPE 170
Score = 31.5 bits (72), Expect = 1.6
Identities = 15/55 (27%), Positives = 32/55 (58%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
D D+ E++ + E+E+ ++E++EEEEEEE+E+++++ + E
Sbjct: 336 EDDDDDLEEEEEDVDLSDEEEDEEDEDSDDEDDEEEEEEEKEKKKKKSAESTRSE 390
Score = 31.1 bits (71), Expect = 2.2
Identities = 10/47 (21%), Positives = 28/47 (59%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++ ++++ + ++ E++EE+EEE+ E ++ ++E +EV
Sbjct: 136 DDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPERKKSKKEVMKEV 182
Score = 31.1 bits (71), Expect = 2.6
Identities = 9/52 (17%), Positives = 28/52 (53%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
R++++ ++++ + ++ +EE+EEE+ E ++ ++E +E
Sbjct: 130 DDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPERKKSKKEVMKE 181
Score = 30.7 bits (70), Expect = 3.3
Identities = 8/46 (17%), Positives = 28/46 (60%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E +++++ ++++ ++++ + + + E++EE+EEE+ E
Sbjct: 125 EIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPE 170
Score = 30.4 bits (69), Expect = 3.6
Identities = 8/47 (17%), Positives = 26/47 (55%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E +++++ ++++ ++++ + E++EE+EEE+ E
Sbjct: 124 SEIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPE 170
Score = 30.4 bits (69), Expect = 4.5
Identities = 11/60 (18%), Positives = 32/60 (53%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E+ L G+ E +++++ ++++ ++++ + + E++EE+EEE+ E
Sbjct: 111 EDEFVLTHLGQSLSEIDKDDDVRDDDDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPE 170
Score = 30.0 bits (68), Expect = 4.7
Identities = 9/46 (19%), Positives = 27/46 (58%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++ ++++ + ++ E++EE+EEE+ E ++ ++E +E
Sbjct: 136 DDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPERKKSKKEVMKE 181
Score = 29.2 bits (66), Expect = 9.5
Identities = 9/46 (19%), Positives = 27/46 (58%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ ++++ + ++ E++EE+EEE+ E ++ ++E +E
Sbjct: 136 DDFDDDDLGDLASDDRAAHFGGGEDDEEDEEEQPERKKSKKEVMKE 181
>gnl|CDD|235250 PRK04195, PRK04195, replication factor C large subunit;
Provisional.
Length = 482
Score = 68.8 bits (169), Expect = 4e-12
Identities = 33/78 (42%), Positives = 55/78 (70%), Gaps = 4/78 (5%)
Query: 579 DQDEI----GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
++EI GS + I+ I ++ EEE++E++++ +++EEEEE ++E++EEE
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEE 454
Query: 635 EEEEEEEEEEEEEEEEEE 652
+EEEEEE EEE+EEEEE+
Sbjct: 455 KEEEEEEAEEEKEEEEEK 472
Score = 58.0 bits (141), Expect = 9e-09
Identities = 33/92 (35%), Positives = 54/92 (58%), Gaps = 8/92 (8%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E I L + ++ ++ E+ E++ EEE++E++++ +++EEEEEEE+E++EEE+E
Sbjct: 397 EEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKE 456
Query: 649 EEEEVRGGGKEEISLHFYVLYVLSKGKIAGLF 680
EEEE KEE K K A LF
Sbjct: 457 EEEEEAEEEKEEEE--------EKKKKQATLF 480
Score = 40.7 bits (96), Expect = 0.002
Identities = 18/62 (29%), Positives = 37/62 (59%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EEE E ++ ++ ++ E+ E + EEE++E++++ +++EEEEEEE +E+
Sbjct: 396 EEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEK 455
Query: 661 IS 662
Sbjct: 456 EE 457
Score = 40.7 bits (96), Expect = 0.002
Identities = 17/59 (28%), Positives = 36/59 (61%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EEE E ++ ++ ++ E+ +++ EEE++E++++ +++EEEEE KEE
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEE 453
Score = 36.4 bits (85), Expect = 0.046
Identities = 14/58 (24%), Positives = 34/58 (58%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
EEE E ++ ++ ++ V++ E++ EEE++E++++ +++EE KE+
Sbjct: 395 TEEEIEFLTGSKKATKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKE 452
Score = 35.7 bits (83), Expect = 0.086
Identities = 24/64 (37%), Positives = 36/64 (56%)
Query: 562 TNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE 621
T K+K I + + ++ E + E +E++EEE+EEEEEE EEE+EE
Sbjct: 409 TKKIKKIVEKAEKKREEEKKEKKKKAFAGKKKEEEEEEEKEKKEEEKEEEEEEAEEEKEE 468
Query: 622 EEEE 625
EEE+
Sbjct: 469 EEEK 472
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family. The Daxx protein (also known as the
Fas-binding protein) is thought to play a role in
apoptosis, but precise role played by Daxx remains to be
determined. Daxx forms a complex with Axin.
Length = 715
Score = 68.8 bits (168), Expect = 5e-12
Identities = 36/53 (67%), Positives = 40/53 (75%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
+E EEEE EEEEEEEEEEEEE QE EEEE E+EEEEEE E + EEE+ G
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGS 489
Score = 66.5 bits (162), Expect = 2e-11
Identities = 35/51 (68%), Positives = 40/51 (78%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+E EEEE EEEEEEEEEEEEEE+E +EEE E+EEEEEE E + EEE E
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 66.1 bits (161), Expect = 3e-11
Identities = 35/51 (68%), Positives = 39/51 (76%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E EEEE EEEEEEEEEEEEEE+ EEEE E+EEEEEE E + EEE E
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 65.3 bits (159), Expect = 6e-11
Identities = 34/55 (61%), Positives = 39/55 (70%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+E EEEE EEEEEEEEEEEE ++E EEEE E+EEEEEE E + EE G E
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSE 491
Score = 65.3 bits (159), Expect = 6e-11
Identities = 38/62 (61%), Positives = 43/62 (69%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E EEEE EEEEEEEEEEEEEE+E EE + E+EEEEEE E + EEE E E G G+
Sbjct: 438 ESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGE 497
Query: 659 EE 660
E
Sbjct: 498 EP 499
Score = 64.9 bits (158), Expect = 7e-11
Identities = 40/77 (51%), Positives = 45/77 (58%), Gaps = 11/77 (14%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE-----------EE 646
E EE EEEEEEEEEEEEEE+E EEEE ++EEEEEE E + EEE EE
Sbjct: 439 SEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEE 498
Query: 647 EEEEEEVRGGGKEEISL 663
EE+ E R IS
Sbjct: 499 PEEDAERRNSEMAGISR 515
Score = 64.5 bits (157), Expect = 9e-11
Identities = 33/52 (63%), Positives = 38/52 (73%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ EEEE EEEEEEEEEEEEEE+E E +E E+EEEEEE E + EEE E
Sbjct: 436 SQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEME 487
Score = 60.3 bits (146), Expect = 2e-09
Identities = 33/50 (66%), Positives = 39/50 (78%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+E EEEE EEEEE +EEEEEEE+E EEEE E+EEEEEE E G +EE+
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEM 486
Score = 56.1 bits (135), Expect = 5e-08
Identities = 32/50 (64%), Positives = 37/50 (74%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+E EEEE EEEEEE +EEEEEE+E EEEE E+EEEEEE E G +E
Sbjct: 437 QESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEM 486
Score = 54.1 bits (130), Expect = 2e-07
Identities = 29/57 (50%), Positives = 35/57 (61%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R + + E +E EEEE E +EEEEEEEEEEE+E EEEE E+EEEE
Sbjct: 417 RSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEE 473
Score = 51.1 bits (122), Expect = 2e-06
Identities = 31/66 (46%), Positives = 37/66 (56%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R E Q + + E +E EEEE V+EEEEEEEEEEEEE+E EEE
Sbjct: 406 RQERERQGTSSRSSDPSKASSTSGESPSMASQESEEEESVEEEEEEEEEEEEEEQESEEE 465
Query: 647 EEEEEE 652
E E+EE
Sbjct: 466 EGEDEE 471
Score = 51.1 bits (122), Expect = 2e-06
Identities = 24/64 (37%), Positives = 31/64 (48%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
EEE E+EEEEEE E + EEE E E + + EE EE+ E E + G +
Sbjct: 462 SEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQ 521
Query: 659 EEIS 662
S
Sbjct: 522 PRGS 525
Score = 48.4 bits (115), Expect = 1e-05
Identities = 25/88 (28%), Positives = 36/88 (40%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ + E E + + E EE E+EEEEEE E + EEE E + + + EE
Sbjct: 440 EEEESVEEEEEEEEEEEEEEQESEEEEGEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEP 499
Query: 636 EEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EE+ E E G S+
Sbjct: 500 EEDAERRNSEMAGISRMSEGQQPRGSSV 527
Score = 42.6 bits (100), Expect = 6e-04
Identities = 24/65 (36%), Positives = 30/65 (46%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
GE EEEEEE E + EEE E E + EE EE+ E E E ++ RG
Sbjct: 467 GEDEEEEEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSS 526
Query: 658 KEEIS 662
+ S
Sbjct: 527 VQPES 531
Score = 33.3 bits (76), Expect = 0.42
Identities = 21/94 (22%), Positives = 37/94 (39%), Gaps = 7/94 (7%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEE-------EEEEEEEEEVQEEEE 631
+++ E ++ G+ + EE EE+ E E E ++ VQ E
Sbjct: 473 EEEVEADNGSEEEMEGSSEGDGDGEEPEEDAERRNSEMAGISRMSEGQQPRGSSVQPESP 532
Query: 632 EEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
+EE + E + E EE +E + +S H
Sbjct: 533 QEEPLQPESMDAESVGEESDEELLAEESPLSSHT 566
Score = 30.7 bits (69), Expect = 3.0
Identities = 17/75 (22%), Positives = 27/75 (36%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
++D I + G++ + E +EE + E + E V EE +EE EE
Sbjct: 500 EEDAERRNSEMAGISRMSEGQQPRGSSVQPESPQEEPLQPESMDAESVGEESDEELLAEE 559
Query: 639 EEEEEEEEEEEEEEV 653
E E
Sbjct: 560 SPLSSHTELEGVATP 574
>gnl|CDD|148630 pfam07133, Merozoite_SPAM, Merozoite surface protein (SPAM). This
family consists of several Plasmodium falciparum SPAM
(secreted polymorphic antigen associated with
merozoites) proteins. Variation among SPAM alleles is
the result of deletions and amino acid substitutions in
non-repetitive sequences within and flanking the alanine
heptad-repeat domain. Heptad repeats in which the a and
d position contain hydrophobic residues generate
amphipathic alpha-helices which give rise to helical
bundles or coiled-coil structures in proteins. SPAM is
an example of a P. falciparum antigen in which a
repetitive sequence has features characteristic of a
well-defined structural element.
Length = 164
Score = 64.1 bits (156), Expect = 6e-12
Identities = 29/69 (42%), Positives = 48/69 (69%), Gaps = 4/69 (5%)
Query: 589 ENII----QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E+II + + ++EEEEEE+EEE EE E+ E+EEE V++EEEEEE+EE+ + ++
Sbjct: 34 EDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKD 93
Query: 645 EEEEEEEEV 653
E++ ++
Sbjct: 94 IEKKNINDI 102
Score = 55.2 bits (133), Expect = 5e-09
Identities = 28/56 (50%), Positives = 46/56 (82%), Gaps = 2/56 (3%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE--EEEEEEEEEEEE 652
++E+ +E E+ ++E++E++EEEEEE+ +E EE E+ E+EEE E+EEEEEE+EE+
Sbjct: 32 DKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEEEEEEDEED 87
Score = 54.1 bits (130), Expect = 2e-08
Identities = 29/64 (45%), Positives = 48/64 (75%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EN+++ ++ ++E+ +E E+ ++E++E++EEEEE EEE EE E+ E+EEE E+EE
Sbjct: 20 ENLLEHVKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEIVEDEE 79
Query: 649 EEEE 652
EEEE
Sbjct: 80 EEEE 83
Score = 45.6 bits (108), Expect = 1e-05
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++E+ +E E+ ++E QE++EEEEEE+EEE EE E+ E+EEE+
Sbjct: 32 DKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDEEEI 74
Score = 45.6 bits (108), Expect = 1e-05
Identities = 27/99 (27%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Query: 560 PNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEE-- 617
K + + +K+ TS E E++ + + EEEEE+EEE EE E+ E
Sbjct: 14 EEEKKDENLLEHVKI--TSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIEDE 71
Query: 618 ----EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+EEEEEE +E+ + ++ E++ + +++
Sbjct: 72 EEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDN 110
Score = 32.1 bits (73), Expect = 0.43
Identities = 25/66 (37%), Positives = 44/66 (66%), Gaps = 2/66 (3%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE--EEEEEEEEEEEEEEEEEEEEEVRGG 656
E++ EEE+++E E + ++E+ ++E E+ +E++E++EEEEEE+EEE EE
Sbjct: 10 EKKPEEEKKDENLLEHVKITSWDKEDIIKENEDVKDEKQEDDEEEEEEDEEEIEEPEDIE 69
Query: 657 GKEEIS 662
+EEI
Sbjct: 70 DEEEIV 75
Score = 32.1 bits (73), Expect = 0.50
Identities = 10/51 (19%), Positives = 30/51 (58%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+EEEEEE+EE+ + ++ E++ ++ +++ + + ++ E+ ++
Sbjct: 77 DEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQNLISKNYKKNEKSKK 127
Score = 30.6 bits (69), Expect = 1.4
Identities = 15/77 (19%), Positives = 38/77 (49%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
D++EI P + I E EEEE+EE+ + ++ E++ + +++ +
Sbjct: 56 EEDEEEIEEPEDIEDEEEIVEDEEEEEEDEEDNVDLKDIEKKNINDIFNSTQDDNAQNLI 115
Query: 637 EEEEEEEEEEEEEEEEV 653
+ ++ E+ ++ E++
Sbjct: 116 SKNYKKNEKSKKTAEDI 132
>gnl|CDD|220383 pfam09756, DDRGK, DDRGK domain. This is a family of proteins of
approximately 300 residues, found in plants and
vertebrates. They contain a highly conserved DDRGK
motif.
Length = 189
Score = 63.2 bits (154), Expect = 2e-11
Identities = 30/57 (52%), Positives = 42/57 (73%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
RR +RE EEEE EE ++ EE+ E E +EEE EEE E+++EEEE +E EE+ +E+E
Sbjct: 17 RRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQE 73
Score = 56.6 bits (137), Expect = 3e-09
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+L + R ++ E EEEE EE ++ EE+ E E +EEE EEE E+++EEEE +E EE+
Sbjct: 10 KLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQAR 69
Score = 55.9 bits (135), Expect = 6e-09
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ ++ E EEEE EE ++ EE+ E E +EEEE EEE E+++EEEE +E EE+ +
Sbjct: 15 QARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARK 70
Score = 55.9 bits (135), Expect = 6e-09
Identities = 28/76 (36%), Positives = 47/76 (61%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R + + R ER++ EE+ E E +EEEE EEE E+++ +EE +E EE+ +E+EE E+
Sbjct: 18 RQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEK 77
Query: 647 EEEEEEVRGGGKEEIS 662
+ V G +++S
Sbjct: 78 LKSSFVVEEEGTDKLS 93
Score = 55.1 bits (133), Expect = 1e-08
Identities = 26/67 (38%), Positives = 40/67 (59%), Gaps = 8/67 (11%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE--------EEEEEEEE 647
+ E+ E E +EEEE EEE E+++EEEE + +EE+ +E+EE E EEE ++
Sbjct: 33 KLEEKREGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKL 92
Query: 648 EEEEEVR 654
+EE
Sbjct: 93 SADEESN 99
Score = 55.1 bits (133), Expect = 1e-08
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ G ++ + EE++ ++ E EEEE EE + EE+ E E +EEEE EEE E+++EE
Sbjct: 1 KKIGAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEE 60
Query: 655 GGGKEE 660
+EE
Sbjct: 61 RKEREE 66
Score = 53.2 bits (128), Expect = 6e-08
Identities = 25/63 (39%), Positives = 43/63 (68%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+R + EE++ ++ E EEEE EE ++++E+ E E +EEEE EEE E+++EEEE + +
Sbjct: 7 KRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREE 66
Query: 659 EEI 661
+
Sbjct: 67 QAR 69
Score = 52.8 bits (127), Expect = 6e-08
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + E++ ++ E EEEE EE ++ EE+ E + +EEEE EEE E+++EEEE +E EE
Sbjct: 7 KRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELEEEREKKKEEEERKEREE 66
Score = 52.4 bits (126), Expect = 8e-08
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE E+++EEEE +E EE+ +E+EE ++ + EEE ++ +EE E
Sbjct: 44 EEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSADEESNE 100
Score = 50.5 bits (121), Expect = 4e-07
Identities = 21/54 (38%), Positives = 33/54 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EEE E+++EEEE +E EE+ +E+E E+ + EEE ++ +EE E
Sbjct: 47 ELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSADEESNE 100
Score = 48.5 bits (116), Expect = 2e-06
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
ERE+++EEEE +E EE+ +E+EE E+++ EEE ++ +EE E E+
Sbjct: 48 LEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSADEESNELLED 104
Score = 47.0 bits (112), Expect = 6e-06
Identities = 20/63 (31%), Positives = 32/63 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R + E E+++EEEE +E EE+ +E+EE E + EEE ++ +EE
Sbjct: 38 REGERKEEEELEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSADEE 97
Query: 647 EEE 649
E
Sbjct: 98 SNE 100
Score = 45.8 bits (109), Expect = 1e-05
Identities = 20/57 (35%), Positives = 33/57 (57%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
L E+++EEEE +E EE+ +E+EE E+ + EEE ++ +EE E E+
Sbjct: 48 LEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSADEESNELLED 104
Score = 35.1 bits (81), Expect = 0.056
Identities = 16/57 (28%), Positives = 27/57 (47%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E + ER+E EE+ +E+EE E+ + EE ++ +EE E E+
Sbjct: 48 LEEEREKKKEEEERKEREEQARKEQEEYEKLKSSFVVEEEGTDKLSADEESNELLED 104
Score = 29.7 bits (67), Expect = 3.4
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
++ + EE Q ++ E EEEE EE ++ EE+ E R +E
Sbjct: 4 GAKKRAKLEEKQARRQQREAEEEEREERKKLEEKREGERKEEEELE 49
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger. [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 1096
Score = 67.3 bits (164), Expect = 2e-11
Identities = 33/86 (38%), Positives = 44/86 (51%), Gaps = 11/86 (12%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEE-----------EEEEE 625
T ++ + E E+E E + E +++E+ + EEE
Sbjct: 807 TEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEE 866
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEE 651
+EEEEEEEEEEEEEEEEEEEEE EE
Sbjct: 867 EEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 65.4 bits (159), Expect = 8e-11
Identities = 31/59 (52%), Positives = 40/59 (67%), Gaps = 4/59 (6%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEE----EEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
GE+E E + E +++E+ + + E +EEEEEEEEEEEEEEEEEEEEEEE E
Sbjct: 833 GEQELNAENQGEAKQDEKGVDGGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENE 891
Score = 63.9 bits (155), Expect = 2e-10
Identities = 32/59 (54%), Positives = 38/59 (64%), Gaps = 2/59 (3%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ E+ + + + EEEEEEEEEEEE EEEEEEEEEEEEEE EE E E R
Sbjct: 846 KQDEKGVDGGGGSDGGDSEEEEEEEEEEEE--EEEEEEEEEEEEEENEEPLSLEWPETR 902
Score = 63.1 bits (153), Expect = 4e-10
Identities = 36/99 (36%), Positives = 49/99 (49%), Gaps = 27/99 (27%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE----------------- 623
DE ++E+ + + E E + E + ++ E ++E E+E
Sbjct: 794 DEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVD 853
Query: 624 ----------EEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE +EEEEEEEEEEEEEEEEEEEEEE EE
Sbjct: 854 GGGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEE 892
Score = 61.9 bits (150), Expect = 8e-10
Identities = 34/91 (37%), Positives = 45/91 (49%), Gaps = 17/91 (18%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE--------- 629
D+ G E + + E E + E + ++ E ++E E+E E Q E
Sbjct: 794 DEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVD 853
Query: 630 --------EEEEEEEEEEEEEEEEEEEEEEE 652
+ EEEEEEEEEEEEEEEEEEEEE
Sbjct: 854 GGGGSDGGDSEEEEEEEEEEEEEEEEEEEEE 884
Score = 61.5 bits (149), Expect = 1e-09
Identities = 35/102 (34%), Positives = 47/102 (46%), Gaps = 27/102 (26%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE------------------ 630
E + E E++E E + E + ++ E ++E E+E
Sbjct: 795 EGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKGVDG 854
Query: 631 ---------EEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EEEEEEEEEEEEEEEEEEEEEE +E +SL
Sbjct: 855 GGGSDGGDSEEEEEEEEEEEEEEEEEEEEEEEEEENEEPLSL 896
Score = 55.8 bits (134), Expect = 6e-08
Identities = 26/39 (66%), Positives = 30/39 (76%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E EEEEEEEEEEEEEEEEEEEEE EE + E E +++
Sbjct: 867 EEEEEEEEEEEEEEEEEEEEEEENEEPLSLEWPETRQKQ 905
Score = 52.7 bits (126), Expect = 6e-07
Identities = 33/86 (38%), Positives = 42/86 (48%), Gaps = 3/86 (3%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEE---EEEEEEEEEEEEEVQEEEEEEEE 635
+ + G E I R+GE+E E E E +E + E E EE E E E E E+E E
Sbjct: 672 ETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGE 731
Query: 636 EEEEEEEEEEEEEEEEEVRGGGKEEI 661
E EE EE E+E E E G + E
Sbjct: 732 IETGEEGEEVEDEGEGEAEGKHEVET 757
Score = 49.6 bits (118), Expect = 5e-06
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE---EEEEEEEEEEEE 645
E + E E + +E E E E E E +E+E+E E+Q E+ E +E E + E E
Sbjct: 746 EGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEG 805
Query: 646 EEEEEEEVRGGGKEE 660
E E E+ G+ E
Sbjct: 806 ETEAGEKDEHEGQSE 820
Score = 48.8 bits (116), Expect = 9e-06
Identities = 27/68 (39%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE-----EEEEEEEE 652
GE EE E E+E E E + E E E E+ E + E+E E E E +E E E EE E
Sbjct: 657 GENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVE 716
Query: 653 VRGGGKEE 660
G + E
Sbjct: 717 HEGETEAE 724
Score = 48.5 bits (115), Expect = 1e-05
Identities = 25/71 (35%), Positives = 34/71 (47%), Gaps = 8/71 (11%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE------ 651
GE E + E E E E E + E+E E E++ +E + + E E EE E E E E E
Sbjct: 671 GETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEG 730
Query: 652 --EVRGGGKEE 660
E G+E
Sbjct: 731 EIETGEEGEEV 741
Score = 48.1 bits (114), Expect = 1e-05
Identities = 25/63 (39%), Positives = 32/63 (50%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
GER E E E EE E E+E E E + + E E E E + E+E E E E +E G
Sbjct: 649 GERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKG 708
Query: 658 KEE 660
+ E
Sbjct: 709 ETE 711
Score = 47.7 bits (113), Expect = 2e-05
Identities = 24/57 (42%), Positives = 32/57 (56%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + + E E EE E E E E E E+E E++ EE EE E+E E E E + E E E
Sbjct: 702 KEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETE 758
Score = 46.1 bits (109), Expect = 7e-05
Identities = 26/63 (41%), Positives = 36/63 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E E EE EE E+E E E E + E E + +E E E E E E +E+E+E E++ G
Sbjct: 729 EGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGED 788
Query: 659 EEI 661
E+
Sbjct: 789 GEM 791
Score = 45.8 bits (108), Expect = 9e-05
Identities = 25/61 (40%), Positives = 34/61 (55%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
GE E EE EE E+E E E E + E E + +E E E E E E +E+E+E E + G
Sbjct: 730 GEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDG 789
Query: 658 K 658
+
Sbjct: 790 E 790
Score = 45.4 bits (107), Expect = 1e-04
Identities = 24/63 (38%), Positives = 36/63 (57%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E EE E+E E E E + E E E + +E + E E E E +E+E+E E + E+ E++G
Sbjct: 736 EEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDE 795
Query: 658 KEE 660
E
Sbjct: 796 GAE 798
Score = 45.0 bits (106), Expect = 1e-04
Identities = 26/62 (41%), Positives = 33/62 (53%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
GE E E E+E E E EE EE E+E E + E + E E E + +E E E E E E +
Sbjct: 719 GETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDE 778
Query: 658 KE 659
E
Sbjct: 779 DE 780
Score = 44.6 bits (105), Expect = 2e-04
Identities = 21/62 (33%), Positives = 29/62 (46%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E EE E E+E E E + E E E + E + E+E E E E +E + + E
Sbjct: 655 AEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKEADHKGETEAEE 714
Query: 658 KE 659
E
Sbjct: 715 VE 716
Score = 44.2 bits (104), Expect = 2e-04
Identities = 26/59 (44%), Positives = 31/59 (52%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E E EE E E E E E E+E E E EE EE E+E E E E + E E E + + E
Sbjct: 709 ETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHE 767
Score = 44.2 bits (104), Expect = 3e-04
Identities = 24/85 (28%), Positives = 37/85 (43%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ + + E + + E E E+E E E EE EE E+E E E + E E E
Sbjct: 700 EAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEGKHEVETEG 759
Query: 640 EEEEEEEEEEEEEVRGGGKEEISLH 664
+ +E E E E E ++E +
Sbjct: 760 DRKETEHEGETEAEGKEDEDEGEIQ 784
Score = 43.1 bits (101), Expect = 6e-04
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 4/65 (6%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE----EEEEEEEEEEE 652
+G+ E + E E E E E++E E + E Q ++ E ++E E+E + E +++E+
Sbjct: 792 KGDEGAEGKVEHEGETEAGEKDEHEGQSETQADDTEVKDETGEQELNAENQGEAKQDEKG 851
Query: 653 VRGGG 657
V GGG
Sbjct: 852 VDGGG 856
Score = 43.1 bits (101), Expect = 6e-04
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E I+ GE E+E E E E + E E E + +E E + E E E +E+E+E E + E+
Sbjct: 729 EGEIETGEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGED 788
Query: 649 EE 650
E
Sbjct: 789 GE 790
Score = 42.7 bits (100), Expect = 6e-04
Identities = 22/67 (32%), Positives = 34/67 (50%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
G+R+E E E E E E +E+E+E E + E + +E E + E E E E E++
Sbjct: 757 TEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGDEGAEGKVEHEGETEAGEKDEHE 816
Query: 656 GGKEEIS 662
G E +
Sbjct: 817 GQSETQA 823
Score = 42.3 bits (99), Expect = 8e-04
Identities = 23/64 (35%), Positives = 29/64 (45%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
R GE E E E E EE E E+E E + E E E E E + E+E E E E +
Sbjct: 644 RTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGEGEIEAKE 703
Query: 656 GGKE 659
+
Sbjct: 704 ADHK 707
Score = 41.9 bits (98), Expect = 0.001
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E EE E+E E E E + E E E + + E E E E E +E+E+E E + E+ G
Sbjct: 735 GEEGEEVEDEGEGEAEGKHEVETEGDRKETEHEGETEAEGKEDEDEGEIQAGEDGEMKGD 794
Query: 659 EE 660
E
Sbjct: 795 EG 796
Score = 41.5 bits (97), Expect = 0.002
Identities = 25/85 (29%), Positives = 36/85 (42%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ + EI + ++ + E E E E E+E E E EE EE E E E E
Sbjct: 692 EQEGEGEIEAKEADHKGETEAEEVEHEGETEAEGTEDEGEIETGEEGEEVEDEGEGEAEG 751
Query: 636 EEEEEEEEEEEEEEEEEVRGGGKEE 660
+ E E E + +E E E +E
Sbjct: 752 KHEVETEGDRKETEHEGETEAEGKE 776
Score = 40.0 bits (93), Expect = 0.004
Identities = 22/60 (36%), Positives = 26/60 (43%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E E EE E E E E E E E+E E E + E E E E E +G + E
Sbjct: 637 EAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQEGE 696
Score = 39.2 bits (91), Expect = 0.007
Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ +G+ E E E EE E E E E EE E E+E E E + E E E E+
Sbjct: 630 LSKGDVAEAEHTGERTGEEGERPTEAEGE---NGEESGGEAEQEGETETKGENESEGEIP 686
Query: 655 GGGKEE 660
K E
Sbjct: 687 AERKGE 692
Score = 38.4 bits (89), Expect = 0.014
Identities = 24/65 (36%), Positives = 28/65 (43%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E E E EE E E E E EE E E+E E E + E E E E E +
Sbjct: 635 VAEAEHTGERTGEEGERPTEAEGENGEESGGEAEQEGETETKGENESEGEIPAERKGEQE 694
Query: 657 GKEEI 661
G+ EI
Sbjct: 695 GEGEI 699
>gnl|CDD|237063 PRK12329, nusA, transcription elongation factor NusA; Provisional.
Length = 449
Score = 64.8 bits (158), Expect = 6e-11
Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 3/83 (3%)
Query: 572 IKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
IK DQ+ + E I Q R E E + E EE E E+ E EE+ +
Sbjct: 370 IKDSAEYDQEAEDAKVAELISQ---REEEEALQREAEERLEAEQAERAEEDARLRELYPL 426
Query: 632 EEEEEEEEEEEEEEEEEEEEEVR 654
E+E E+E+E EE + EEEEE R
Sbjct: 427 PEDEFEDEDELEEAQPEEEEEAR 449
Score = 59.0 bits (143), Expect = 3e-09
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E + EEEE + E EE E E+ + EE+ E E+E E+E+E E +EE
Sbjct: 387 ELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEE 446
Score = 59.0 bits (143), Expect = 4e-09
Identities = 20/59 (33%), Positives = 29/59 (49%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ EEEE + E EE E E+ E +E+ E E+E E+E+E EE +E
Sbjct: 390 SQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEEEEA 448
Score = 59.0 bits (143), Expect = 4e-09
Identities = 20/60 (33%), Positives = 29/60 (48%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E + EEEE + E EE E E+ + EE+ E E+E E+E+E +EE
Sbjct: 386 AELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDELEEAQPEEE 445
Score = 54.4 bits (131), Expect = 1e-07
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++E E+ + E + EEEE + E E + E E+ E EE+ E E+E +
Sbjct: 377 DQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLPEDEFEDEDE 436
Query: 659 EEIS 662
E +
Sbjct: 437 LEEA 440
Score = 45.5 bits (108), Expect = 7e-05
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E ++E E+ + E +EEEE + E EE E E+ E EE+ R +
Sbjct: 374 AEYDQEAEDAKVAELISQREEEEALQREAEERLEAEQAERAEEDARLRELYPLP 427
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit
Rpc31. RNA polymerase III contains seventeen subunits
in yeasts and in human cells. Twelve of these are akin
to RNA polymerase I or II and the other five are RNA pol
III-specific, and form the functionally distinct groups
(i) Rpc31-Rpc34-Rpc82, and (ii) Rpc37-Rpc53. Rpc31,
Rpc34 and Rpc82 form a cluster of enzyme-specific
subunits that contribute to transcription initiation in
S.cerevisiae and H.sapiens. There is evidence that these
subunits are anchored at or near the N-terminal Zn-fold
of Rpc1, itself prolonged by a highly conserved but RNA
polymerase III-specific domain.
Length = 221
Score = 62.1 bits (151), Expect = 8e-11
Identities = 25/57 (43%), Positives = 43/57 (75%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ G EEEE+ +E+ E++ +E E E+V EE+E++EEEEEEEEEE+E+ +++++
Sbjct: 138 KVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDD 194
Score = 60.5 bits (147), Expect = 2e-10
Identities = 22/55 (40%), Positives = 41/55 (74%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EEEE+ +E+ E++ +E E E+ +E+E++EEEEEEEEEE+E+ ++++++
Sbjct: 144 EEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDDD 198
Score = 60.5 bits (147), Expect = 2e-10
Identities = 20/52 (38%), Positives = 38/52 (73%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E +E+ E++ +E E E+ +EE+E EEEEEEEEEE+E+ ++++++++
Sbjct: 146 EEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 60.2 bits (146), Expect = 3e-10
Identities = 20/57 (35%), Positives = 42/57 (73%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ E E+ +E+ E++ +E E E+ +EE +++EEEEEEEEEE+E+ ++++++++
Sbjct: 141 LFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 59.4 bits (144), Expect = 6e-10
Identities = 21/54 (38%), Positives = 41/54 (75%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EE+ +E+ E++ +E E E+ +E E++EEEEEEEEEE+E+ ++++++++
Sbjct: 144 EEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDDDDDD 197
Score = 59.4 bits (144), Expect = 6e-10
Identities = 24/57 (42%), Positives = 41/57 (71%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R+ EEEE+ +E+ E++ +E E E +EE+E++EEEEEEEEEE+E+ ++++
Sbjct: 137 RKVGLFTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDFDDDD 193
Score = 54.0 bits (130), Expect = 4e-08
Identities = 22/48 (45%), Positives = 35/48 (72%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EEEE+ +E+ E++ + E E+ +EE+E++EEEEEEEEEE+E+
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEEDEDF 189
Score = 35.5 bits (82), Expect = 0.062
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EEEE+ ++ E++ +E E E+ +EE+E++E +EE
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEE 185
Score = 35.1 bits (81), Expect = 0.064
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EEEE+ + + E++ +E E E+ +EE+E++EE +EE
Sbjct: 142 FTEEEEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEEEEEEE 185
Score = 29.0 bits (65), Expect = 7.2
Identities = 10/35 (28%), Positives = 19/35 (54%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
EE+ +E+ E++ +E E E+ +E +EE
Sbjct: 146 EEDIDEKLSMLEKKLKELEAEDVDEEDEKDEEEEE 180
>gnl|CDD|184885 PRK14891, PRK14891, 50S ribosomal protein L24e/unknown domain
fusion protein; Provisional.
Length = 131
Score = 59.6 bits (144), Expect = 9e-11
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E + +E+ +E E + +E +EEE +E +E +E + E EE +EEE+EE
Sbjct: 75 EAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEA 129
Score = 58.4 bits (141), Expect = 3e-10
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E + +E+ +E E + +E +EE + +E +E +E + E EE +EEE+E
Sbjct: 73 AEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDE 127
Score = 58.0 bits (140), Expect = 4e-10
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + +E+ +E E + +E +EEEE + +E +E + E EE +EEE+EE E
Sbjct: 77 EAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAE 130
Score = 57.7 bits (139), Expect = 5e-10
Identities = 20/65 (30%), Positives = 30/65 (46%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E EE E + +E+ +E E + E +EEEE +E +E +E + E EE
Sbjct: 64 AAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADE 123
Query: 656 GGKEE 660
EE
Sbjct: 124 EEDEE 128
Score = 57.3 bits (138), Expect = 7e-10
Identities = 21/52 (40%), Positives = 33/52 (63%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ +E+ +E E + +E +EEEE +E V E +E + E EE +EEE+EE E
Sbjct: 80 DADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 56.5 bits (136), Expect = 1e-09
Identities = 20/53 (37%), Positives = 32/53 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+E+ +E E + +E +EEEE +E +E +E + E EE +EEE+EE E
Sbjct: 79 ADADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 56.5 bits (136), Expect = 1e-09
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ +E+ +E E + +E +EEEE + +E +E + E EE +EEE+EE E
Sbjct: 80 DADEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 51.9 bits (124), Expect = 4e-08
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E +E E + +E +EEEE +E +E +E + E EE +EEE+EE E
Sbjct: 82 DEDADEAAEADAADEADEEEETDEAVDETADEADAEAEEADEEEDEEAEA 131
Score = 50.3 bits (120), Expect = 2e-07
Identities = 17/63 (26%), Positives = 26/63 (41%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
G E+ E EE E + +E +E E + +E +EEEE +E +E
Sbjct: 56 GRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDETADEAD 115
Query: 658 KEE 660
E
Sbjct: 116 AEA 118
Score = 48.8 bits (116), Expect = 7e-07
Identities = 15/52 (28%), Positives = 23/52 (44%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E+ E EE E +E+ +E E + +E +EEEE +E
Sbjct: 54 EAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDE 105
Score = 47.6 bits (113), Expect = 2e-06
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
R E E E+ E EE E + +E+ +E E + +E +EEEE
Sbjct: 48 RDLEWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEE 102
Score = 46.9 bits (111), Expect = 3e-06
Identities = 13/59 (22%), Positives = 23/59 (38%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
R R+ E E E+ E + E + +E+ +E E + +E +EE
Sbjct: 45 REARDLEWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEET 103
Score = 46.5 bits (110), Expect = 3e-06
Identities = 15/63 (23%), Positives = 24/63 (38%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E E+ E EE + + +E+ +E E + +E +EEEE E
Sbjct: 51 EWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEEEETDEAVDET 110
Query: 661 ISL 663
Sbjct: 111 ADE 113
Score = 45.3 bits (107), Expect = 9e-06
Identities = 16/68 (23%), Positives = 25/68 (36%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+ E L R E E E+ E E E + +E+ +E E +
Sbjct: 34 DSKCEKNYDLGREARDLEWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADA 93
Query: 645 EEEEEEEE 652
+E +EEE
Sbjct: 94 ADEADEEE 101
Score = 36.5 bits (84), Expect = 0.011
Identities = 13/55 (23%), Positives = 20/55 (36%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E + E E E+ E EE E + +E+ +E E + EE
Sbjct: 46 EARDLEWTEAGRAEKGPAAAATAAAEAAEEAEAADADEDADEAAEADAADEADEE 100
>gnl|CDD|218538 pfam05285, SDA1, SDA1. This family consists of several SDA1
protein homologues. SDA1 is a Saccharomyces cerevisiae
protein which is involved in the control of the actin
cytoskeleton. The protein is essential for cell
viability and is localised in the nucleus.
Length = 317
Score = 62.4 bits (152), Expect = 2e-10
Identities = 22/66 (33%), Positives = 42/66 (63%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++ E E+ E +++++EEEE E EE+E+ + + E + E ++E E + E+EEE++E
Sbjct: 84 KKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAK 143
Query: 656 GGKEEI 661
KE+
Sbjct: 144 KAKEDS 149
Score = 62.4 bits (152), Expect = 2e-10
Identities = 22/65 (33%), Positives = 40/65 (61%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
R ++E E+ E +++++EEEE E EE+E+ +E E + E ++E E + E+EEE+
Sbjct: 82 ERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEA 141
Query: 656 GGKEE 660
K +
Sbjct: 142 AKKAK 146
Score = 61.6 bits (150), Expect = 4e-10
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 8/73 (10%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEE--------VQEEEEEEEEEEEEEEEEEEEE 647
R+ + E+ E +++++EEEE E EE+E+ V+ ++E E + E+EEE++E
Sbjct: 83 RKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAA 142
Query: 648 EEEEEVRGGGKEE 660
++ +E E
Sbjct: 143 KKAKEDSDEELSE 155
Score = 60.1 bits (146), Expect = 1e-09
Identities = 23/80 (28%), Positives = 49/80 (61%), Gaps = 5/80 (6%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE----EEEEEE 643
I + +L+ + + EE +++E E+ E +++++EEEE EV+E+E+ ++E E E ++E
Sbjct: 69 IPGL-ELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDEDSDDEGEWIDVESDKEI 127
Query: 644 EEEEEEEEEVRGGGKEEISL 663
E + E+EE + ++
Sbjct: 128 ESSDSEDEEEKDEAAKKAKE 147
Score = 58.1 bits (141), Expect = 4e-09
Identities = 22/51 (43%), Positives = 34/51 (66%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E ++E E + E+EEE++E ++ + +EE EE+EEE EEEE E E+E
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 58.1 bits (141), Expect = 5e-09
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
GE + E ++E E + E+EEE++E + +E+ +EE EE+EEE EEEE E E
Sbjct: 115 EGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAE 170
Score = 57.7 bits (140), Expect = 5e-09
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E ++E E + E+EEE++E ++ +E+ EE EE+EEE EEEE E E+E
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 57.7 bits (140), Expect = 7e-09
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E ++E E + E+EEE++E ++ ++ +EE EE+EEE EEEE E E+E
Sbjct: 122 ESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 55.8 bits (135), Expect = 2e-08
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E + E ++E E + E+EEE++E ++ +E+ +EE EE+EEE EEEE E
Sbjct: 115 EGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAE 170
Score = 55.0 bits (133), Expect = 4e-08
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E + E ++E E + E+EEE++E ++ +E+ +EE EE+EEE EEEE
Sbjct: 114 DEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEA 167
Score = 54.7 bits (132), Expect = 5e-08
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+E E + E ++E E + E+EEE+ + ++ +E+ +EE EE+EEE EEE KE+
Sbjct: 114 DEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKEK 173
Query: 661 IS 662
S
Sbjct: 174 AS 175
Score = 54.7 bits (132), Expect = 6e-08
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E E + E+EEE++E ++ +E+ +EE+ EE+EEE EEEE E E+E
Sbjct: 125 KEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEAEAEKE 172
Score = 53.9 bits (130), Expect = 1e-07
Identities = 19/62 (30%), Positives = 37/62 (59%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E+E+ ++E E + E ++E E + EEE++E ++ +E+ +EE EE+EE +E
Sbjct: 108 EDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAEEEEA 167
Query: 661 IS 662
+
Sbjct: 168 EA 169
Score = 52.7 bits (127), Expect = 3e-07
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E E EE+E+ ++E E + E ++E + E+EEE++E ++ +E+ +EE
Sbjct: 100 EEEEWEVEEDEDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEE 159
Query: 658 KEE 660
+
Sbjct: 160 EAA 162
Score = 52.4 bits (126), Expect = 3e-07
Identities = 19/54 (35%), Positives = 34/54 (62%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E ++E E + E ++E E + E+EE ++E ++ +E+ +EE EE+EEE E
Sbjct: 110 EDSDDEGEWIDVESDKEIESSDSEDEEEKDEAAKKAKEDSDEELSEEDEEEAAE 163
Score = 46.2 bits (110), Expect = 3e-05
Identities = 21/66 (31%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 595 IRRGEREE--EEEEEEEEEEEE--EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ GE++ EEE + E E+ +EEE +++ E+ E +++++EEEE E EE+E+
Sbjct: 52 LEAGEKKGYGEEEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVEEDED 111
Query: 651 EEVRGG 656
+ G
Sbjct: 112 SDDEGE 117
Score = 38.1 bits (89), Expect = 0.012
Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 6/51 (11%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
S+ +E + E +EE EE+EEE EEEE E E+E+ E
Sbjct: 132 SEDEEEKDEA------AKKAKEDSDEELSEEDEEEAAEEEEAEAEKEKASE 176
Score = 35.8 bits (83), Expect = 0.070
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
G E++ EEE + E E+ +EE +++E E+ E +++++EEEE EV
Sbjct: 51 GLEAGEKKGYGEEEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEV 106
Score = 32.7 bits (75), Expect = 0.54
Identities = 16/57 (28%), Positives = 31/57 (54%), Gaps = 1/57 (1%)
Query: 597 RG-EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
RG E E++ EEE + E+ E+ +EEE +++E E+ E +++++E
Sbjct: 44 RGKPASMGLEAGEKKGYGEEEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDE 100
Score = 29.2 bits (66), Expect = 7.8
Identities = 12/46 (26%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 622 EEEEVQEEE-----EEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
EEE V E+ +EEE +++E E+ E +++ + E+
Sbjct: 62 EEEVVDGIPGLELLEKWKEEERKKKEAEQGLESDDDDDEEEEWEVE 107
>gnl|CDD|237629 PRK14160, PRK14160, heat shock protein GrpE; Provisional.
Length = 211
Score = 60.5 bits (147), Expect = 2e-10
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+E ++ + E EE+ +E E +EE+ +EE+ E EE E+EE E+ EE E K
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELK 60
Query: 659 EEISLH 664
+E +
Sbjct: 61 DENNKL 66
Score = 58.2 bits (141), Expect = 1e-09
Identities = 20/52 (38%), Positives = 34/52 (65%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE+ +E E +EE++ +EE+ E EE+++EE E+ EE E + EE ++E
Sbjct: 11 ENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDE 62
Score = 57.1 bits (138), Expect = 3e-09
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ E EE+ +E E +EE++ +EE+ EE E+EE E+ EE E + EE ++ K
Sbjct: 8 AKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLK 67
Query: 659 EE 660
EE
Sbjct: 68 EE 69
Score = 56.7 bits (137), Expect = 5e-09
Identities = 20/54 (37%), Positives = 36/54 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E E +EE++ +EE+ E EE E+EE +++ EE E + EE ++E + +EE +
Sbjct: 18 CKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENK 71
Score = 52.4 bits (126), Expect = 1e-07
Identities = 20/61 (32%), Positives = 37/61 (60%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EN+ + + +EE++ +EE+ E EE E+EE E+ +E E + EE ++E + +EE
Sbjct: 11 ENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEEN 70
Query: 649 E 649
+
Sbjct: 71 K 71
Score = 52.1 bits (125), Expect = 2e-07
Identities = 19/56 (33%), Positives = 34/56 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E +EE++ +EE+ E EE E+EE EE E + EE ++E + +EE +++
Sbjct: 19 KENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLE 74
Score = 51.7 bits (124), Expect = 2e-07
Identities = 20/55 (36%), Positives = 35/55 (63%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+EE++ +EE+ E EE E+EE E+ E E + EE ++E + +EE ++ E E+
Sbjct: 23 NKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENEL 77
Score = 48.6 bits (116), Expect = 2e-06
Identities = 21/53 (39%), Positives = 34/53 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ +EE+ E EE E+EE E+ EE EV+ EE ++E + +EE ++ E E E
Sbjct: 27 DKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEA 79
Score = 47.1 bits (112), Expect = 7e-06
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E + +EE+ E EE E+EE E+ EE + EE ++E + +EE ++ E E E ++
Sbjct: 26 EDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEALK 81
Score = 46.7 bits (111), Expect = 1e-05
Identities = 17/58 (29%), Positives = 31/58 (53%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
E+E ++ + E EE+ + E +EE++ +EE+ E EE E+EE E+ +
Sbjct: 1 MEKECKDAKHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEE 58
Score = 46.7 bits (111), Expect = 1e-05
Identities = 23/71 (32%), Positives = 37/71 (52%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
K + +E EN + + E E EE E+EE E+ EE E + EE+++E + +E
Sbjct: 9 KHENMEEDCCKENENKEEDKGKEEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKE 68
Query: 636 EEEEEEEEEEE 646
E ++ E E E
Sbjct: 69 ENKKLENELEA 79
Score = 43.6 bits (103), Expect = 1e-04
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E + E EE E+EE E+ EE E + E ++E + +EE ++ E E E ++ +R
Sbjct: 31 EEDLEFEEIEKEEIIEDSEESNEVKIEELKDENNKLKEENKKLENELEALKDRLLR 86
>gnl|CDD|218223 pfam04712, Radial_spoke, Radial spokehead-like protein. This
family includes the radial spoke head proteins RSP4 and
RSP6 from Chlamydomonas reinhardtii, and several
eukaryotic homologues, including mammalian RSHL1, the
protein product of a familial ciliary dyskinesia
candidate gene.
Length = 481
Score = 63.2 bits (154), Expect = 2e-10
Identities = 35/85 (41%), Positives = 41/85 (48%), Gaps = 29/85 (34%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEV-----------------------------QE 628
E EEEEEEEE E +E EE + E EV Q+
Sbjct: 288 EEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVNPEQK 347
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEV 653
+EEEE+E+EEEEEEEEE EE E E
Sbjct: 348 DEEEEQEDEEEEEEEEEPEEPEPEE 372
Score = 60.8 bits (148), Expect = 1e-09
Identities = 34/87 (39%), Positives = 43/87 (49%), Gaps = 29/87 (33%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQ-----------------------------EE 629
EEEEEEEEEE E +E EE + E ++ E+
Sbjct: 287 LEEEEEEEEEEEPAERDELEENPDFEGLEVRELADSLDNWVHHVQHILPQGRCTWVNPEQ 346
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEVRGG 656
++EEEE+E+EEEEEEEEE EE E G
Sbjct: 347 KDEEEEQEDEEEEEEEEEPEEPEPEEG 373
Score = 45.1 bits (107), Expect = 1e-04
Identities = 19/52 (36%), Positives = 26/52 (50%), Gaps = 3/52 (5%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEE---EVQEEEEEEEE 635
R + + E E+E+EEEEEEEEE EE E EE + E+ +
Sbjct: 338 RCTWVNPEQKDEEEEQEDEEEEEEEEEPEEPEPEEGPPLLTPISEDAPLPND 389
Score = 43.5 bits (103), Expect = 3e-04
Identities = 33/60 (55%), Positives = 39/60 (65%), Gaps = 8/60 (13%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYVLYV 670
E E E EEEEEEEEV E +EE+E EEEEEEE EE +EEE G G ++ YV +V
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE---GTG-----VNKYVYFV 215
Score = 43.5 bits (103), Expect = 3e-04
Identities = 24/38 (63%), Positives = 28/38 (73%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
+R GE EEEEEE E +EE+E EEEEEEE E +EEE
Sbjct: 167 LREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 43.1 bits (102), Expect = 4e-04
Identities = 26/41 (63%), Positives = 30/41 (73%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E E E EEEEEEEE E +EE+E +EEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 42.7 bits (101), Expect = 6e-04
Identities = 26/41 (63%), Positives = 29/41 (70%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E E E EEEEEEEE E +EE + EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 42.0 bits (99), Expect = 8e-04
Identities = 26/41 (63%), Positives = 29/41 (70%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E E E EEEEEEEE E +EE+ EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 41.2 bits (97), Expect = 0.002
Identities = 24/44 (54%), Positives = 29/44 (65%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+ E E EEEEEEEE E +EE+E EEEE +E EE +EEE
Sbjct: 161 YVAEVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 40.8 bits (96), Expect = 0.002
Identities = 25/41 (60%), Positives = 29/41 (70%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E E E EEEEEEEE E +EE+E EE +EEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 40.8 bits (96), Expect = 0.002
Identities = 26/41 (63%), Positives = 28/41 (68%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E E E EEEEEEEE E +E E EEEEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 40.0 bits (94), Expect = 0.003
Identities = 25/41 (60%), Positives = 29/41 (70%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E E E EEEEEEEE E +EE+E +EEEEE EE +EEE
Sbjct: 164 EVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEVPKEEE 204
Score = 32.3 bits (74), Expect = 0.97
Identities = 17/38 (44%), Positives = 21/38 (55%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
V E E E EEEEEEEE E +EE+E +E +
Sbjct: 162 VAEVELREGEEEEEEEEVGEADEEDEGEEEEEEEPEEV 199
>gnl|CDD|202096 pfam02029, Caldesmon, Caldesmon.
Length = 431
Score = 62.7 bits (152), Expect = 3e-10
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 2/70 (2%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE--EEEEEEEVRG 655
G E EEEE+EE EE EE EE E + E++ + + EE ++EE+ E EEEE+ +
Sbjct: 105 GAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKR 164
Query: 656 GGKEEISLHF 665
G EE + F
Sbjct: 165 GSLEENNGEF 174
Score = 58.1 bits (140), Expect = 7e-09
Identities = 28/63 (44%), Positives = 38/63 (60%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E EEEE+EE EE EE EE E + Q+ + + EE ++EE+E E EEEE+ RG
Sbjct: 107 ENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGS 166
Query: 657 GKE 659
+E
Sbjct: 167 LEE 169
Score = 57.0 bits (137), Expect = 2e-08
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E+ E E EEEE+EE EE EEV+E E + E++ + + EE ++EE+ +EE
Sbjct: 102 EDSGAENETVEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEE 160
Score = 57.0 bits (137), Expect = 2e-08
Identities = 25/66 (37%), Positives = 35/66 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E EE+EE EE EE EE E + E++ + EE ++EE+E E EEEE+ +
Sbjct: 112 EEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENN 171
Query: 659 EEISLH 664
E H
Sbjct: 172 GEFMTH 177
Score = 54.3 bits (130), Expect = 1e-07
Identities = 25/82 (30%), Positives = 40/82 (48%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E +EE EE EE EE E + E++ + ++ EE ++EE+E E EEEE+ +
Sbjct: 112 EEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENN 171
Query: 657 GKEEISLHFYVLYVLSKGKIAG 678
G+ + S+G G
Sbjct: 172 GEFMTHKLKHTENTFSRGGAEG 193
Score = 53.1 bits (127), Expect = 3e-07
Identities = 23/62 (37%), Positives = 34/62 (54%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E+EE EE EE EE E + E++ + EE ++EE+E E EEEE+ + E
Sbjct: 111 VEEEEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEEN 170
Query: 655 GG 656
G
Sbjct: 171 NG 172
Score = 49.3 bits (117), Expect = 4e-06
Identities = 21/58 (36%), Positives = 30/58 (51%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EE EE E + E++ + + EE Q+EE+E E EEEE+ + EE E
Sbjct: 116 KEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGE 173
Score = 49.3 bits (117), Expect = 4e-06
Identities = 21/56 (37%), Positives = 31/56 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E EE +++ EE + EEEE+ ++EE + EEEE+ +EE E E E R
Sbjct: 215 ELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKR 270
Score = 48.9 bits (116), Expect = 5e-06
Identities = 20/62 (32%), Positives = 35/62 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+++ EE + EEEE+ ++EE + + +EEEE+ +EE E E E+ ++V G
Sbjct: 219 LKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGL 278
Query: 659 EE 660
E
Sbjct: 279 SE 280
Score = 48.1 bits (114), Expect = 1e-05
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E EE +++ EE + EEEE+ QEE + + EEEE+ +EE E
Sbjct: 211 EAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAE 265
Score = 46.6 bits (110), Expect = 3e-05
Identities = 25/86 (29%), Positives = 35/86 (40%), Gaps = 14/86 (16%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE--------------EEEEVQEEEEEEE 634
+ L R REE +E E E ++E + E+ + E EEE
Sbjct: 55 DEAALLERLARREERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQEDSGAENETVEEE 114
Query: 635 EEEEEEEEEEEEEEEEEEVRGGGKEE 660
E+EE EE EE EE E + K +
Sbjct: 115 EKEESREEREEVEETEGVTKSEQKND 140
Score = 45.8 bits (108), Expect = 6e-05
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ R E EE E + E++ + + EE ++ ++E E EEEE+ + EE E
Sbjct: 116 KEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGE 173
Score = 44.6 bits (105), Expect = 1e-04
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+R ER + EEEE+ ++EE + + EEEE + +EE E E E+ ++ E+
Sbjct: 222 KREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGL 278
Score = 44.3 bits (104), Expect = 2e-04
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
RR EEEE+ ++EE + + EEEE+ +E E E E+ ++ E+ E+
Sbjct: 226 RRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSED 281
Score = 43.1 bits (101), Expect = 3e-04
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++++E E EE +++ EE + EEE Q ++EE + + EEEE+ +EE E R
Sbjct: 207 QKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERR 262
Score = 43.1 bits (101), Expect = 4e-04
Identities = 23/63 (36%), Positives = 41/63 (65%), Gaps = 2/63 (3%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+E E+ +++++E E EE +++ EE ++ EEEE+ ++EE + + EEEE+ R K
Sbjct: 199 GKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRR--LK 256
Query: 659 EEI 661
EEI
Sbjct: 257 EEI 259
Score = 41.6 bits (97), Expect = 0.001
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 4/60 (6%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE----EEEEEEEEEEEEEEEEEE 652
+ +++E E EE +++ EE + EEEE + ++EE + EEEE+ +EE E E
Sbjct: 206 KQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAE 265
Score = 41.6 bits (97), Expect = 0.001
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R + EEEE+ ++EE + + EEEE+ ++EE E E E+ ++ E+ E+
Sbjct: 226 RRKVLEEEEQRRKQEEADRKSREEEEKRRLKEEIERRRAEAAEKRQKVPEDGLSED 281
Score = 40.0 bits (93), Expect = 0.004
Identities = 23/84 (27%), Positives = 36/84 (42%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
S DE ++ L+ R R EE +E E E ++E + + E +E
Sbjct: 43 SVPDEESKTSTDDEAALLERLARREERRDERFSEALERQKEFKPTSTDQSLSEPSRRMQE 102
Query: 638 EEEEEEEEEEEEEEEVRGGGKEEI 661
+ E E EEEE+E +EE+
Sbjct: 103 DSGAENETVEEEEKEESREEREEV 126
Score = 39.6 bits (92), Expect = 0.005
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
G+ E+ +++++E E EE +++ EE + EEEE+ ++EE + + EEEE
Sbjct: 199 GKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREEEE 251
Score = 39.3 bits (91), Expect = 0.006
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E + E +E E+ +++++E E++E +++ EE + EEEE+ ++EE R +E
Sbjct: 190 GAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSREE 249
Query: 660 E 660
E
Sbjct: 250 E 250
Score = 38.9 bits (90), Expect = 0.009
Identities = 17/58 (29%), Positives = 35/58 (60%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E + E +E E+ +++++E E EE++++ EE + EEEE+ ++EE + + R
Sbjct: 190 GAEGAQVEAGKEFEKLKQKQQEAALELEELKKKREERRKVLEEEEQRRKQEEADRKSR 247
Score = 36.9 bits (85), Expect = 0.028
Identities = 25/118 (21%), Positives = 52/118 (44%), Gaps = 8/118 (6%)
Query: 550 SEWQSLWDNVPNTNKLKTIR------PSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEE 603
SE ++ W + K + + + E + ++++ RG E
Sbjct: 135 SEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGA 194
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+ E +E E+ +++++E E EE +++ EE + EEEE+ ++EE +EE
Sbjct: 195 QVEAGKEFEKLKQKQQEAALE--LEELKKKREERRKVLEEEEQRRKQEEADRKSREEE 250
Score = 36.9 bits (85), Expect = 0.035
Identities = 19/72 (26%), Positives = 32/72 (44%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
+ E++ + + EE ++EE+E E EEEE+ + EE E + + E G
Sbjct: 134 KSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEG 193
Query: 657 GKEEISLHFYVL 668
+ E F L
Sbjct: 194 AQVEAGKEFEKL 205
Score = 36.6 bits (84), Expect = 0.042
Identities = 14/60 (23%), Positives = 29/60 (48%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ ++ +E + + ++ + + EE ++EE+E E EEEE+ + EE E
Sbjct: 114 EEKEESREEREEVEETEGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGE 173
Score = 32.7 bits (74), Expect = 0.69
Identities = 17/66 (25%), Positives = 26/66 (39%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
EE ++EE+E E EEEE+ + E E + + E E +V G +
Sbjct: 142 RDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRGGAEGAQVEAGKE 201
Query: 659 EEISLH 664
E
Sbjct: 202 FEKLKQ 207
Score = 32.7 bits (74), Expect = 0.75
Identities = 16/72 (22%), Positives = 33/72 (45%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + + ++ + + EE ++EE+E E EEEE+ + ++E E + + E
Sbjct: 130 EGVTKSEQKNDWRDAEECQKEEKEPEPEEEEKPKRGSLEENNGEFMTHKLKHTENTFSRG 189
Query: 649 EEEEVRGGGKEE 660
E + +E
Sbjct: 190 GAEGAQVEAGKE 201
Score = 29.6 bits (66), Expect = 6.3
Identities = 16/62 (25%), Positives = 27/62 (43%), Gaps = 2/62 (3%)
Query: 596 RRGEREEEEEEEEEEEE--EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
RR EREE+ +++EE + + E + V +EE + ++E E EE
Sbjct: 12 RRREREEQLRQKQEEGSLGQVTTQVEVNSQNSVPDEESKTSTDDEAALLERLARREERRD 71
Query: 654 RG 655
Sbjct: 72 ER 73
>gnl|CDD|217450 pfam03247, Prothymosin, Prothymosin/parathymosin family.
Prothymosin alpha and parathymosin are two ubiquitous
small acidic nuclear proteins that are thought to be
involved in cell cycle progression, proliferation, and
cell differentiation.
Length = 106
Score = 57.3 bits (138), Expect = 4e-10
Identities = 28/54 (51%), Positives = 36/54 (66%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E EE +E ++E EEEEEV E++EEEE E EEEE EEEEE E + ++E
Sbjct: 38 ENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDE 91
Score = 56.5 bits (136), Expect = 7e-10
Identities = 28/55 (50%), Positives = 34/55 (61%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E EE +E ++E EEEEE +++EEEE E EEEE EEEEE E R EE
Sbjct: 38 ENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEE 92
Score = 54.2 bits (130), Expect = 4e-09
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E +E ++E EEEEE +E++EEEE E +EEE EEEEE E + E+EE++
Sbjct: 41 ENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDA 95
Score = 54.2 bits (130), Expect = 4e-09
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE----EEEEEEEEVR 654
E +E ++E EEEEE +E++EEEE + EEEE EEEEE E E+EE++ E +
Sbjct: 39 NEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDAETK 98
Query: 655 GGGKEEIS 662
+E
Sbjct: 99 KQKTDEDD 106
Score = 53.0 bits (127), Expect = 9e-09
Identities = 29/63 (46%), Positives = 39/63 (61%), Gaps = 9/63 (14%)
Query: 599 EREEEEEEEEE---------EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E++E EE+E E EE +E ++E EE +E +E++EEEE E EEEE EEEE
Sbjct: 18 EKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEE 77
Query: 650 EEE 652
E E
Sbjct: 78 ETE 80
Score = 51.1 bits (122), Expect = 5e-08
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
G+ E EEEEE +E++EEEE E EEEE E +EE E + E+EE++ E +++
Sbjct: 47 GDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDAETKKQ 100
Score = 51.1 bits (122), Expect = 5e-08
Identities = 28/69 (40%), Positives = 41/69 (59%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
G+ EN Q EEEE +E++EEEE E EEEE EEEE E + E+EE++
Sbjct: 36 GNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEEEETEGATGKRAAEDEEDDA 95
Query: 644 EEEEEEEEE 652
E ++++ +E
Sbjct: 96 ETKKQKTDE 104
Score = 48.8 bits (116), Expect = 3e-07
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+E EE+E + E EE + ++E EEEEE +E++EEEE E EEEE
Sbjct: 20 KEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEG 73
Score = 46.1 bits (109), Expect = 3e-06
Identities = 25/61 (40%), Positives = 37/61 (60%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+E++E EE+E + E EE +E ++E EEEEE +E++EEEE E E G +E
Sbjct: 17 KEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDDEEEEGEGEEEEGEEE 76
Query: 660 E 660
E
Sbjct: 77 E 77
Score = 28.8 bits (64), Expect = 3.2
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ + + E ++ +E++E EE+E + E EE +E ++E EEEE
Sbjct: 2 DTKVDAAAELSAKDLKEKKEVVEEKENGKNAPANGNENEENGAQEGDDEMEEEEEVDEDD 61
Query: 659 EE 660
EE
Sbjct: 62 EE 63
>gnl|CDD|217861 pfam04050, Upf2, Up-frameshift suppressor 2. Transcripts
harbouring premature signals for translation termination
are recognised and rapidly degraded by eukaryotic cells
through a pathway known as nonsense-mediated mRNA decay.
In Saccharomyces cerevisiae, three trans-acting factors
(Upf1 to Upf3) are required for nonsense-mediated mRNA
decay.
Length = 171
Score = 58.5 bits (142), Expect = 5e-10
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E ++ EE+EE EE+E++E +EEEV ++E++EE + EEE+ +EEEV
Sbjct: 3 SESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEV 58
Score = 58.2 bits (141), Expect = 8e-10
Identities = 22/55 (40%), Positives = 34/55 (61%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
GE +EE EE+E++E +EEE + ++E EE + EEE+ +EEE + E E
Sbjct: 10 GEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEA 64
Score = 56.2 bits (136), Expect = 3e-09
Identities = 21/54 (38%), Positives = 34/54 (62%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EE EE+E++E +EEE + ++E+ +E + EEE+ +EEE + E E E
Sbjct: 12 EDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAE 65
Score = 55.1 bits (133), Expect = 8e-09
Identities = 20/52 (38%), Positives = 33/52 (63%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE+E++E +EEE + ++E++EE EEE+ +EEE + E E E + E
Sbjct: 18 EEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDRE 69
Score = 55.1 bits (133), Expect = 9e-09
Identities = 20/55 (36%), Positives = 33/55 (60%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EE+E++E +EEE + ++E++EE EEE+ +EEE + E E E +
Sbjct: 14 EELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDR 68
Score = 54.7 bits (132), Expect = 1e-08
Identities = 20/57 (35%), Positives = 35/57 (61%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E E ++ EE+EE EE+E++ +EEE + ++E++EE + EEE+ V +E
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEE 57
Score = 52.4 bits (126), Expect = 6e-08
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E ++ EE+EE EE+E E +EEE + ++E++EE + EEE++ +EE
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEE 56
Score = 51.2 bits (123), Expect = 2e-07
Identities = 18/51 (35%), Positives = 31/51 (60%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ E +EEE + ++E++EE + EEE++ +EEE + E E E + E E
Sbjct: 21 EDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDREFE 71
Score = 50.1 bits (120), Expect = 4e-07
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ ++E +EEE + ++E++EE + EE Q +EEE + E E E + E E
Sbjct: 19 EDEDDESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDREFE 71
Score = 48.1 bits (115), Expect = 2e-06
Identities = 19/53 (35%), Positives = 32/53 (60%), Gaps = 2/53 (3%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E++E +EEE + ++E++EE + E EE+ +EEE + E E E + E
Sbjct: 19 EDEDDESSDEEEVDLPDDEQDEESDSE--EEQIFVTRQEEEVDPEAEAEFDRE 69
Score = 45.8 bits (109), Expect = 1e-05
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+EEE + ++E++EE + EEE+ ++EEE + E E E + E E
Sbjct: 23 DESSDEEEVDLPDDEQDEESDSEEEQIFVTRQEEEVDPEAEAEFDREFE 71
Score = 37.0 bits (86), Expect = 0.012
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
E ++ EE+EE EE+E++E +EEE ++ ++E S
Sbjct: 1 SGSESESDDGEEDEELPEEDEDDESSDEEEVDLPDDEQDEESD 43
Score = 29.7 bits (67), Expect = 3.8
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 5/44 (11%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ ++EE + EEE+ +EEEV E E E + E E
Sbjct: 33 LPDDEQDEESD-----SEEEQIFVTRQEEEVDPEAEAEFDREFE 71
Score = 28.5 bits (64), Expect = 7.1
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEE 623
+ E + EEE+ +EEE + E E E
Sbjct: 37 EQDEESDSEEEQIFVTRQEEEVDPEAEAE 65
>gnl|CDD|237622 PRK14140, PRK14140, heat shock protein GrpE; Provisional.
Length = 191
Score = 56.9 bits (138), Expect = 3e-09
Identities = 23/53 (43%), Positives = 32/53 (60%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE+ E+ EEE EE E EE E+E +E EEE E E +EE+ + E E ++
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKL 53
Score = 56.9 bits (138), Expect = 3e-09
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EEE EE E EE E+E EEE EEE + E +EE+ + E E + +E EE +R
Sbjct: 9 EEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEERYLR 62
Score = 56.5 bits (137), Expect = 3e-09
Identities = 25/53 (47%), Positives = 34/53 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+ E+ EEE EE E EE E+E EEE V+EE E E +EE+ + E E + +E
Sbjct: 3 EKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDE 55
Score = 55.0 bits (133), Expect = 1e-08
Identities = 25/54 (46%), Positives = 33/54 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + E+ EEE EE E EE E+E EEE EEE E E +EE+ + E E + +E
Sbjct: 2 EEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDE 55
Score = 53.8 bits (130), Expect = 3e-08
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ E+ EEE EE E EE E+E EEE EE E E +EE+ + E E + +E EE
Sbjct: 4 KNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58
Score = 50.0 bits (120), Expect = 7e-07
Identities = 23/45 (51%), Positives = 30/45 (66%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE+ E+ EEE EE EV+E E+E EEE EEE E E +EE+ +
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAK 45
Score = 46.1 bits (110), Expect = 1e-05
Identities = 21/46 (45%), Positives = 27/46 (58%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EE+ E+ EE EE E EE E+E EEE EEE E E+ + +I
Sbjct: 1 MEEKNEQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKI 46
Score = 41.9 bits (99), Expect = 3e-04
Identities = 21/53 (39%), Positives = 29/53 (54%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E + + + E EE E+E EEE EEE E E +EE + E E + +E EE
Sbjct: 6 EQVEEEVEETEVEEAVEDEVEEETVEEESEAELLDEEQAKIAELEAKLDELEE 58
Score = 28.8 bits (65), Expect = 7.3
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
++E+ +E ++ E EEE E E +EE+ + E E ++ E EE
Sbjct: 5 NEQVEEEVEETEVEEAVEDEVEEETVEEESEA--ELLDEEQAKIAELEAKLDELEE 58
>gnl|CDD|220377 pfam09747, DUF2052, Coiled-coil domain containing protein
(DUF2052). This entry is of sequences of two conserved
domains separated by a region of low complexity,
spanning some 200 residues. The function is unknown.
Length = 178
Score = 56.7 bits (137), Expect = 3e-09
Identities = 26/62 (41%), Positives = 36/62 (58%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ + R E E E++EEEE EEEEE+ EEE +EEEE + EEEEE+ + +E
Sbjct: 60 LESSLDREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDE 119
Query: 651 EE 652
Sbjct: 120 LP 121
Score = 56.3 bits (136), Expect = 4e-09
Identities = 30/56 (53%), Positives = 38/56 (67%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E++EEEE EEEEE+ EEE EEEEEE + EEEEE+ + +E EE EE+R
Sbjct: 75 EQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELR 130
Score = 54.0 bits (130), Expect = 2e-08
Identities = 29/60 (48%), Positives = 37/60 (61%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+L ++EEEE EEEEE+ EEE EEEEEE + EEEEE+ + +E EE EE
Sbjct: 69 ARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREE 128
Score = 53.2 bits (128), Expect = 4e-08
Identities = 29/76 (38%), Positives = 35/76 (46%), Gaps = 8/76 (10%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEE--------EEEEEEEVQEEEEEEEEEEEEEEEEE 644
Q I + EEE E + E EE E+ E++EEEE EEEEE+ E
Sbjct: 32 QYIGQFLTEEEREARGRAKRWSEGLSGVLESSLDREEARLELLEQQEEEESAEEEEEDPE 91
Query: 645 EEEEEEEEVRGGGKEE 660
EE EEEEE G
Sbjct: 92 EENEEEEEEYQRGPFG 107
Score = 51.7 bits (124), Expect = 2e-07
Identities = 29/61 (47%), Positives = 38/61 (62%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++L+ + E EE EEEEE+ EEE EEEEEE + EEEEE+ + +E EE EE
Sbjct: 71 LELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELR 130
Query: 652 E 652
E
Sbjct: 131 E 131
Score = 50.5 bits (121), Expect = 4e-07
Identities = 26/53 (49%), Positives = 32/53 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E EEEEE+ EEE EEEEEE + +EEEE+ + +E EE EE EE
Sbjct: 80 EESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREE 132
Score = 50.1 bits (120), Expect = 5e-07
Identities = 28/57 (49%), Positives = 35/57 (61%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ E E EEEEE+ EEE EEEEEE + EEEEE+ + +E EE EE EE
Sbjct: 76 QQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREE 132
Score = 49.3 bits (118), Expect = 8e-07
Identities = 25/59 (42%), Positives = 33/59 (55%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
+ EE E E++EEEE EEE ++ EEE EEEEEE + EEEEE+ +
Sbjct: 65 DREEARLELLEQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTP 123
Score = 48.2 bits (115), Expect = 2e-06
Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE---- 652
EEEE+ EEE EEEEEE + EE +E+ + +E EE EE EE E
Sbjct: 81 ESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREEFISEMHQR 140
Query: 653 -VRGGGKE 659
+ G K+
Sbjct: 141 FLSGEDKD 148
Score = 32.0 bits (73), Expect = 0.57
Identities = 21/62 (33%), Positives = 26/62 (41%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+Q E E E EEEE + EEEEE+ + +E EE EE EE
Sbjct: 75 EQQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREEFI 134
Query: 639 EE 640
E
Sbjct: 135 SE 136
Score = 29.7 bits (67), Expect = 2.9
Identities = 23/97 (23%), Positives = 39/97 (40%), Gaps = 22/97 (22%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEE----EEEEEEEEVQEEE--- 630
++E + E + E EE + EEEEE+ + EE E EE
Sbjct: 76 QQEEEESAEEEEEDPEEENEEEEEEYQRGPFGEEEEEDGDSYDELPTPEEREELREEFIS 135
Query: 631 ---------EEEE------EEEEEEEEEEEEEEEEEE 652
E+++ +E EE ++ + E++EEE
Sbjct: 136 EMHQRFLSGEDKDFDYSKVDENEEYDDLKIVEQDEEE 172
Score = 29.7 bits (67), Expect = 2.9
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 22/76 (28%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEE----------------------VQEEEEEEE 634
RG EEEEE+ + +E EE EE E V E EE ++
Sbjct: 103 RGPFGEEEEEDGDSYDELPTPEEREELREEFISEMHQRFLSGEDKDFDYSKVDENEEYDD 162
Query: 635 EEEEEEEEEEEEEEEE 650
+ E++EEE ++E
Sbjct: 163 LKIVEQDEEERYFDDE 178
>gnl|CDD|217829 pfam03985, Paf1, Paf1. Members of this family are components of
the RNA polymerase II associated Paf1 complex. The Paf1
complex functions during the elongation phase of
transcription in conjunction with Spt4-Spt5 and
Spt16-Pob3i.
Length = 431
Score = 59.4 bits (144), Expect = 3e-09
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 3/63 (4%)
Query: 596 RRGERE---EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
RR + EE +E+E+EEEE+ +E EEEE EEE + E+ E + + E
Sbjct: 358 RRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSE 417
Query: 653 VRG 655
+
Sbjct: 418 SKA 420
Score = 59.4 bits (144), Expect = 3e-09
Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 592 IQLIRRGEREEEEE--EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+R R + EE +E+E+EEEE+ +E E +E E+ EEE + E+ E
Sbjct: 351 ESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSS 410
Query: 650 EEEVRGGGKEE 660
+ K +
Sbjct: 411 DVGSDSESKAD 421
Score = 59.0 bits (143), Expect = 4e-09
Identities = 21/72 (29%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
D I ++ +E+EEEE+ +E EEEE E+ EEE Q E+ E +
Sbjct: 363 DPIDFEEVD----------EDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDV 412
Query: 641 EEEEEEEEEEEE 652
+ E + ++E
Sbjct: 413 GSDSESKADKES 424
Score = 58.2 bits (141), Expect = 8e-09
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE +E+E+EEEE+ +E EEEE E+ +EE + E+ E + + E + +
Sbjct: 368 EEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESASD 427
Score = 57.8 bits (140), Expect = 9e-09
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E +E+E+EEEE+ +E EEEE E+ +E + E+ E + + E + +
Sbjct: 366 DFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKADKESA 425
Query: 658 KEEIS 662
+ S
Sbjct: 426 SDSDS 430
Score = 53.2 bits (128), Expect = 3e-07
Identities = 21/58 (36%), Positives = 31/58 (53%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
+ + EE +E+E+EEEE+ E EEEE E+ EEE + E+ E G + S
Sbjct: 363 DPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSESSSDVGSDSESKA 420
Score = 50.5 bits (121), Expect = 2e-06
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+E + ++ + + EE +E ++EEEE+ +E EEEE E+ EEE + R G E
Sbjct: 349 TKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSREDGSSES 408
Query: 662 S 662
S
Sbjct: 409 S 409
Score = 48.2 bits (115), Expect = 9e-06
Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E + ++ + + EE +E+E +EEE+ +E EEEE E+ EEE +
Sbjct: 350 KESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQSR 401
Score = 48.2 bits (115), Expect = 9e-06
Identities = 21/71 (29%), Positives = 35/71 (49%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ + R +E + ++ + + EE +E+ EEEE+ +E EEEE E+ EEE +
Sbjct: 340 LNVKLRNPSTKESKMRDKRRARLDPIDFEEVDEDEDEEEEQRSDEHEEEEGEDSEEEGSQ 399
Query: 652 EVRGGGKEEIS 662
G E S
Sbjct: 400 SREDGSSESSS 410
>gnl|CDD|206039 pfam13868, Trichoplein, Tumour suppressor, Mitostatin. Trichoplein
or mitostatin, was first defined as a meiosis-specific
nuclear structural protein. It has since been linked
with mitochondrial movement. It is associated with the
mitochondrial outer membrane, and over-expression leads
to reduction in mitochondrial motility whereas lack of
it enhances mitochondrial movement. The activity appears
to be mediated through binding the mitochondria to the
actin intermediate filaments (IFs).
Length = 349
Score = 58.8 bits (143), Expect = 3e-09
Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 8/70 (11%)
Query: 593 QLIRRGEREEEEEEEEEE-------EEEEEEEEEEEEEEEVQEEEEEEEEE-EEEEEEEE 644
+ I R E E+E E EEE E+ E EEE E E E +EE+E E ++EE E
Sbjct: 136 ERIERKEEEKEREREEELKILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAE 195
Query: 645 EEEEEEEEVR 654
+E EE +E+R
Sbjct: 196 DEREELDELR 205
Score = 55.7 bits (135), Expect = 3e-08
Identities = 25/63 (39%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE-------EEEEEEEEEEEEE 651
EREEE E E E +EE+E E + +E E+E EE +E EE E +E ++E+E
Sbjct: 164 EREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKE 223
Query: 652 EVR 654
E
Sbjct: 224 EAE 226
Score = 54.9 bits (133), Expect = 6e-08
Identities = 27/74 (36%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEE----EEEEEEVQEEEEEEEE------EEEEE 640
I++ R EEE E E E +EE+E E ++EE ++E EE +E +EE E
Sbjct: 155 ILEYQREKAEREEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYE 214
Query: 641 EEEEEEEEEEEEVR 654
+E ++E+EE E R
Sbjct: 215 RKERQKEKEEAEKR 228
Score = 54.5 bits (132), Expect = 8e-08
Identities = 21/68 (30%), Positives = 37/68 (54%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R E R + E+E E ++EE E+E EE +E++ + +EE E +E ++E+EE
Sbjct: 165 REEEREAERRERKEEKEREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEE 224
Query: 647 EEEEEEVR 654
E+ +
Sbjct: 225 AEKRRRQK 232
Score = 53.8 bits (130), Expect = 1e-07
Identities = 30/86 (34%), Positives = 44/86 (51%), Gaps = 21/86 (24%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEE-------------------EEEEEEEEEEEEEEVQE- 628
E + ++I R + E+E E +E+ E +EEE+E E EEE ++ E
Sbjct: 99 EQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEY 158
Query: 629 -EEEEEEEEEEEEEEEEEEEEEEEEV 653
E+ E EEE E E E +EE+E EV
Sbjct: 159 QREKAEREEEREAERRERKEEKEREV 184
Score = 53.4 bits (129), Expect = 2e-07
Identities = 22/51 (43%), Positives = 35/51 (68%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+EE E +E ++E+EE E+ +++E+Q EE+ EE+EE +EE EEE E
Sbjct: 210 QEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAE 260
Score = 51.1 bits (123), Expect = 9e-07
Identities = 29/85 (34%), Positives = 36/85 (42%), Gaps = 25/85 (29%)
Query: 593 QLIRRGEREEEEEEEEEEE--------EEEEEEEEEEEE-----------------EEVQ 627
Q+ + ER +EE EEE E E+EE E+E E EE +
Sbjct: 242 QIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKE 301
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEE 652
E E EEE EE E EEE E +
Sbjct: 302 ERRAAEREEELEEGERLREEEAERQ 326
Score = 51.1 bits (123), Expect = 1e-06
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 21/80 (26%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEE------------EEVQEEEEEEEEEEEEEEE- 642
RR + EEE + EEEE E + +EE EE ++ +EE EE +E E
Sbjct: 41 RRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQ 100
Query: 643 --------EEEEEEEEEEVR 654
+EE+E E +E R
Sbjct: 101 MDEIIERIQEEDEAEAQEKR 120
Score = 50.3 bits (121), Expect = 2e-06
Identities = 25/78 (32%), Positives = 37/78 (47%), Gaps = 16/78 (20%)
Query: 593 QLIRRGEREEEEEEEEEE-----EEEEEEEEEEEEEEEVQEEEEE-----------EEEE 636
Q+ + + EE+EEE EEE + EEEE E + +EE EE E
Sbjct: 25 QIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEERE 84
Query: 637 EEEEEEEEEEEEEEEEVR 654
+ +EE EE +E E++
Sbjct: 85 KRRQEEYEERLQEREQMD 102
Score = 49.9 bits (120), Expect = 3e-06
Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 15/77 (19%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE--------- 642
+ R + EE++ + EE+EEE +E EEE ++ EEEE E + +EE
Sbjct: 18 VNKERDAQIEEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQ 77
Query: 643 ------EEEEEEEEEEV 653
E+ +EE EE
Sbjct: 78 EQIEEREKRRQEEYEER 94
Score = 49.5 bits (119), Expect = 3e-06
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 16/80 (20%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEE-------EEEEEEEEEEEEEEVQEEEEEEEE------ 635
E + +R + E E+E EE +E EE E +E ++E+EE ++ +++E
Sbjct: 181 EREVARLRAQQEEAEDEREELDELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRARE 240
Query: 636 ---EEEEEEEEEEEEEEEEE 652
EE+EE +EE EEE E
Sbjct: 241 EQIEEKEERLQEERAEEEAE 260
Score = 49.1 bits (118), Expect = 4e-06
Identities = 24/78 (30%), Positives = 37/78 (47%), Gaps = 17/78 (21%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEE---------EEVQEEEEEEEEEEEEE---- 640
+ E E +E ++E+EE E+ +++E EE +E +EE EEE E
Sbjct: 205 RADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERM 264
Query: 641 ----EEEEEEEEEEEEVR 654
E+EE E+E E R
Sbjct: 265 LEKQAEDEELEQENAEKR 282
Score = 48.4 bits (116), Expect = 6e-06
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 16/78 (20%)
Query: 591 IIQLI--RRGEREEEEEEEEEEEE---------EEEEEEEEEEEEEVQEEEEEE-----E 634
+ + I R R+EE EE +E E +EE+E E +E+ E Q++ EE E
Sbjct: 76 LQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNE 135
Query: 635 EEEEEEEEEEEEEEEEEE 652
E E +EEE+E E EEE
Sbjct: 136 ERIERKEEEKEREREEEL 153
Score = 48.0 bits (115), Expect = 9e-06
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 2/52 (3%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EE++ + EE+EEE + E EEE + EEEE E + +EE G+ +
Sbjct: 27 EEKKRIKAEEKEEERRIDEMMEEERLKALAEEEERERKRKEERRE--GRAVL 76
Score = 47.6 bits (114), Expect = 1e-05
Identities = 29/75 (38%), Positives = 41/75 (54%), Gaps = 13/75 (17%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE------- 645
Q+ ER +EE+E E +E+ E++++ EE +E EE E +EEE+E E EEE
Sbjct: 100 QMDEIIERIQEEDEAEAQEKREKQKKLREEIDEFNEERIERKEEEKEREREEELKILEYQ 159
Query: 646 ------EEEEEEEVR 654
EEE E E R
Sbjct: 160 REKAEREEEREAERR 174
Score = 46.4 bits (111), Expect = 3e-05
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 18/86 (20%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEE-------------EEEEEEEEEEEEEVQEEEEE- 632
RI+ +++ R EEEE E + +E EE E+ +EE EE +E E+
Sbjct: 42 RIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQEREQM 101
Query: 633 ----EEEEEEEEEEEEEEEEEEEEVR 654
E +EE+E E +E+ E+++++R
Sbjct: 102 DEIIERIQEEDEAEAQEKREKQKKLR 127
Score = 45.7 bits (109), Expect = 6e-05
Identities = 27/91 (29%), Positives = 42/91 (46%), Gaps = 26/91 (28%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEE------------EE-----EEEEEEVQEEEE 631
E I + ER + EEEE E + +EE EE +EE EE +E E
Sbjct: 40 ERRIDEMMEEERLKALAEEEERERKRKEERREGRAVLQEQIEEREKRRQEEYEERLQERE 99
Query: 632 ---------EEEEEEEEEEEEEEEEEEEEEV 653
+EE+E E +E+ E++++ EE+
Sbjct: 100 QMDEIIERIQEEDEAEAQEKREKQKKLREEI 130
Score = 44.9 bits (107), Expect = 1e-04
Identities = 31/84 (36%), Positives = 37/84 (44%), Gaps = 22/84 (26%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEE--EVQEEEEEEEEEEEE----------------- 639
REE+ EE+EE +EE EEE E E E Q E+EE E+E E
Sbjct: 238 AREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQI 297
Query: 640 ---EEEEEEEEEEEEEVRGGGKEE 660
EE E EEE E +EE
Sbjct: 298 EEKEERRAAEREEELEEGERLREE 321
Score = 44.5 bits (106), Expect = 1e-04
Identities = 26/83 (31%), Positives = 44/83 (53%), Gaps = 16/83 (19%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEE-------------EEEEEEEEEEEEVQEEEEEEE 634
++ + + + E E +E ++E+EE E EE+ EE+EE + + EEE E
Sbjct: 201 LDELRADLYQEEYERKERQKEKEEAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAE 260
Query: 635 EE---EEEEEEEEEEEEEEEEVR 654
E E++ E+EE E+E E+ R
Sbjct: 261 RERMLEKQAEDEELEQENAEKRR 283
Score = 43.7 bits (104), Expect = 2e-04
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 20/88 (22%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE------- 639
R E L + E E+ +EE EE +E E+ +E E +QEE+E E +E+ E
Sbjct: 69 RREGRAVLQEQIEEREKRRQEEYEERLQEREQMDEIIERIQEEDEAEAQEKREKQKKLRE 128
Query: 640 -------------EEEEEEEEEEEEEVR 654
EEE+E E EEE ++
Sbjct: 129 EIDEFNEERIERKEEEKEREREEELKIL 156
Score = 43.4 bits (103), Expect = 3e-04
Identities = 23/65 (35%), Positives = 35/65 (53%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E + + +R EE+ EE+EE +EE EEE E E E++ E+EE E+E E+
Sbjct: 224 EAEKRRRQKQELQRAREEQIEEKEERLQEERAEEEAERERMLEKQAEDEELEQENAEKRR 283
Query: 647 EEEEE 651
+ E
Sbjct: 284 MKRLE 288
Score = 41.0 bits (97), Expect = 0.002
Identities = 17/43 (39%), Positives = 19/43 (44%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
+ Q I E E EEE EE E EEE E + EEE
Sbjct: 290 RRELEQQIEEKEERRAAEREEELEEGERLREEEAERQARIEEE 332
Score = 39.9 bits (94), Expect = 0.004
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 21/85 (24%)
Query: 592 IQLIRRGEREEEEEEEEE---------------------EEEEEEEEEEEEEEEEVQEEE 630
+++ + +EE E+E EE E EEE EE E EE
Sbjct: 262 ERMLEKQAEDEELEQENAEKRRMKRLEHRRELEQQIEEKEERRAAEREEELEEGERLREE 321
Query: 631 EEEEEEEEEEEEEEEEEEEEEEVRG 655
E E + EEE + +E E + G
Sbjct: 322 EAERQARIEEERQRLLKEHAEALLG 346
>gnl|CDD|218684 pfam05672, MAP7, MAP7 (E-MAP-115) family. The organisation of
microtubules varies with the cell type and is presumably
controlled by tissue-specific microtubule-associated
proteins (MAPs). The 115-kDa epithelial MAP
(E-MAP-115/MAP7) has been identified as a
microtubule-stabilising protein predominantly expressed
in cell lines of epithelial origin. The binding of this
microtubule associated protein is nucleotide
independent.
Length = 171
Score = 55.9 bits (134), Expect = 5e-09
Identities = 27/68 (39%), Positives = 37/68 (54%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
RR RE+ E+EE+E E+EE++ E EE + + EE EEE +EEE E+EE
Sbjct: 32 RRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAK 91
Query: 656 GGKEEISL 663
EE
Sbjct: 92 RKAEEEEK 99
Score = 52.0 bits (124), Expect = 9e-08
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 2/60 (3%)
Query: 597 RGEREEE--EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R REEE +EEE E+EE+ + + EEEE QE+EE+E ++++EE E EE E +R
Sbjct: 68 RLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMR 127
Score = 52.0 bits (124), Expect = 1e-07
Identities = 25/62 (40%), Positives = 39/62 (62%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+L RR E EEE +EEE E+EE+ + + EEEE++E+EE+E ++++EE E
Sbjct: 59 ELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEAR 118
Query: 653 VR 654
R
Sbjct: 119 AR 120
Score = 51.2 bits (122), Expect = 2e-07
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+R + E+ E+EE+E E+EE++ E EE + EE EEE +EEE E+E
Sbjct: 31 KRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARRQEEERAREKE 87
Score = 51.2 bits (122), Expect = 2e-07
Identities = 27/84 (32%), Positives = 43/84 (51%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
T+D +E E Q + E+EE+E E+EE++ E EE + E + EEE
Sbjct: 18 TTDAEEATRLLAEKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEARR 77
Query: 637 EEEEEEEEEEEEEEEEVRGGGKEE 660
+EEE E+EE+ + + K+E
Sbjct: 78 QEEERAREKEEKAKRKAEEEEKQE 101
Score = 50.9 bits (121), Expect = 3e-07
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R EREE + EE EEE +EEE +E+EE+ + + EEEE++E+EE+E +
Sbjct: 54 RLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQ 109
Score = 48.6 bits (115), Expect = 1e-06
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+R E EE + EE EEE +E + E+EE+ + + EEEE++E+EE+E K
Sbjct: 53 DRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQK 112
Query: 659 EE 660
EE
Sbjct: 113 EE 114
Score = 47.0 bits (111), Expect = 5e-06
Identities = 21/54 (38%), Positives = 32/54 (59%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E++ E EE + EE EEE +EE E+EE+ + + EEEE++E+EE
Sbjct: 51 EQDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEE 104
Score = 46.2 bits (109), Expect = 8e-06
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E EE + EE EEE +EE + E+EE+ + + EEEE++E+EE+E ++
Sbjct: 52 QDRLEREELKRRAAEERLRREEEARRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQ 109
Score = 44.7 bits (105), Expect = 3e-05
Identities = 22/55 (40%), Positives = 36/55 (65%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ ER E+EE+ + + EEEE++E+EE+E +Q+++EE E EE E E E+
Sbjct: 78 QEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREK 132
Score = 44.3 bits (104), Expect = 5e-05
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
RR E E E+EE+ + + EEEE++E+EE+ + ++++EE E EE E E E+
Sbjct: 76 RRQEEERAREKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREK 132
Score = 40.8 bits (95), Expect = 6e-04
Identities = 20/53 (37%), Positives = 34/53 (64%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EEEE++E+EE+E ++++EE E +EE E E E+ ++ E+E E + R
Sbjct: 95 EEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKR 147
Score = 40.8 bits (95), Expect = 6e-04
Identities = 24/73 (32%), Positives = 43/73 (58%), Gaps = 3/73 (4%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEE---EEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ R+ E EE++E+EE+E ++++EE E EE E E E+ ++ E+E E ++
Sbjct: 89 KAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKRL 148
Query: 650 EEEVRGGGKEEIS 662
EE ++ K E+S
Sbjct: 149 EEIMKRTRKSEVS 161
Score = 34.7 bits (79), Expect = 0.065
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE---EEEEEEEEEEEEVR 654
G + EE E+ + E+ E+EE+ + E+EE++ E EE EE EEE R
Sbjct: 17 GTTDAEEATRLLAEKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRREEEAR 76
Query: 655 GGGKEE 660
+E
Sbjct: 77 RQEEER 82
Score = 32.8 bits (74), Expect = 0.32
Identities = 19/62 (30%), Positives = 32/62 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
ER ++++EE E EE E E E+ ++ E+E E ++ EE + + EV K
Sbjct: 106 ERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLERKKRLEEIMKRTRKSEVSPQVK 165
Query: 659 EE 660
+E
Sbjct: 166 KE 167
Score = 30.4 bits (68), Expect = 2.1
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEE---EEEEEEEEEEEEEEVQEEEEEEEEE 636
+ E + R + + E+E ++++EE E EE E E E+ Q+ E+E E
Sbjct: 85 EKEEKAKRKAEEEEKQEQEEQERIQKQKEEAEARAREEAERMRLEREKHFQQIEQERLER 144
Query: 637 EEEEEE 642
++ EE
Sbjct: 145 KKRLEE 150
Score = 28.5 bits (63), Expect = 7.9
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
E+ E+ E+EE+E E+EE++ E EE R +E +
Sbjct: 30 EKRRQAREQREQEEQERREQEEQDRLEREELKRRAAEERLRR 71
>gnl|CDD|218737 pfam05764, YL1, YL1 nuclear protein. The proteins in this family
are designated YL1. These proteins have been shown to be
DNA-binding and may be a transcription factor.
Length = 238
Score = 57.0 bits (138), Expect = 5e-09
Identities = 25/52 (48%), Positives = 37/52 (71%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EEEE++EE E EEEEEEEE + + + E++E E ++EEE E+E + EE +
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKK 86
Score = 55.1 bits (133), Expect = 2e-08
Identities = 28/64 (43%), Positives = 39/64 (60%), Gaps = 4/64 (6%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE----EEEEEEEEEEEEEEEVRGG 656
EEE EE+E EEEE++EE EEEEEEEE + + E++E E ++EEE +
Sbjct: 19 EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78
Query: 657 GKEE 660
+EE
Sbjct: 79 QREE 82
Score = 53.9 bits (130), Expect = 5e-08
Identities = 25/51 (49%), Positives = 37/51 (72%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EEEE++EE E EEEEEEEE + + + E++E E ++EEE E+E + EE +
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLK 85
Score = 53.5 bits (129), Expect = 8e-08
Identities = 25/54 (46%), Positives = 37/54 (68%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EEEE++EE E EEEEEEEE + + E++E E ++EEE E+E + EE + +
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLKKKK 88
Score = 53.5 bits (129), Expect = 8e-08
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 5/61 (8%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE-----EEEEEEEEEEEEEEEEEEV 653
E E EE+E EEEE++EE E +EEEEEE + E++E E ++EEE E+E+
Sbjct: 19 EEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKEL 78
Query: 654 R 654
+
Sbjct: 79 Q 79
Score = 49.3 bits (118), Expect = 2e-06
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E EE++EE E EEEEEEEE + + ++ +E E ++EEE E+E + EE +
Sbjct: 35 EEEEDDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLK 85
Score = 43.5 bits (103), Expect = 1e-04
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+ E E EEEEEEEE + + ++ E++E ++EEE E+E + EE +
Sbjct: 39 DDEEFEIEEEEEEEEVDSDFDDSEDDEPESDDEEEGEKELQREERLK 85
Score = 34.3 bits (79), Expect = 0.16
Identities = 20/37 (54%), Positives = 25/37 (67%), Gaps = 9/37 (24%)
Query: 626 VQEEEEEEE---------EEEEEEEEEEEEEEEEEEV 653
++EE EE+E EEE++EE E EEEEEEEEV
Sbjct: 18 LEEELEEDEFFWTYLLFEEEEDDEEFEIEEEEEEEEV 54
Score = 30.8 bits (70), Expect = 2.0
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQ 627
+ E++E E ++EEE E+E + EE +
Sbjct: 60 DSEDDEPESDDEEEGEKELQREERLKK 86
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2
subunit 1; Provisional.
Length = 319
Score = 57.4 bits (139), Expect = 8e-09
Identities = 27/68 (39%), Positives = 45/68 (66%), Gaps = 8/68 (11%)
Query: 588 IENII-----QLIRRGERE---EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
I+ +I +GE E +EE+ EE E+ EEEEEE++ E ++E+EE+E+EEEE
Sbjct: 252 IKEVIKKKGGDFKVKGEPEVVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEE 311
Query: 640 EEEEEEEE 647
E+++E ++
Sbjct: 312 EDDDEGDK 319
Score = 49.3 bits (118), Expect = 3e-06
Identities = 19/53 (35%), Positives = 34/53 (64%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
G P + + E+ EEEEEE++ E E+E+EE+E+E +EE+++E ++
Sbjct: 267 GEPEVVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDEGDK 319
Score = 49.3 bits (118), Expect = 4e-06
Identities = 25/80 (31%), Positives = 51/80 (63%), Gaps = 2/80 (2%)
Query: 565 LKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEE 624
++ I +++ K + + G +++ +++ E + EE E+ EEEEEE++ E E+E
Sbjct: 242 MEIIGAALEAIKEVIKKKGGDFKVKGEPEVVGGDEEDLEELLEKAEEEEEEDDYSESEDE 301
Query: 625 EVQEEEEEEEEEEEEEEEEE 644
+ EE+E+EEEEE+++E ++
Sbjct: 302 D--EEDEDEEEEEDDDEGDK 319
Score = 48.5 bits (116), Expect = 6e-06
Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+EE+ EE E+ E +EEE++ E E+E+EE+E+EEEEE++
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDD 314
Score = 47.0 bits (112), Expect = 2e-05
Identities = 21/39 (53%), Positives = 29/39 (74%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+EE+ EE E EEEEEE++ E E+E+EE+E+EEEE
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEE 312
Score = 44.3 bits (105), Expect = 1e-04
Identities = 19/43 (44%), Positives = 30/43 (69%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+EE+ EE+ E+ EEEEEE++ E E+E+EE+E+E +E
Sbjct: 274 GDEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEEEEEDDDE 316
Score = 33.9 bits (78), Expect = 0.22
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E EV +EE+ EE E+ EEEEEE++ E +E+
Sbjct: 268 EPEVVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEED 305
Score = 31.2 bits (71), Expect = 1.9
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E V +EE+ EE E+ EEEEEE++ E ++E
Sbjct: 268 EPEVVGGDEEDLEELLEKAEEEEEEDDYSESEDEDEEDE 306
Score = 30.8 bits (70), Expect = 2.1
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
+EE+ EE E+ EEEEEE++ E E E+
Sbjct: 275 DEEDLEELLEKAEEEEEEDDYSESEDEDEEDEDEE 309
>gnl|CDD|215601 PLN03142, PLN03142, Probable chromatin-remodeling complex ATPase
chain; Provisional.
Length = 1033
Score = 58.7 bits (142), Expect = 9e-09
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
EEE+ + EEE+EEE E + + +++E E+E+E+EE++EE K EIS
Sbjct: 1 EEEQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEIS 58
Score = 46.3 bits (110), Expect = 5e-05
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + EEE+EEE E + +++E ++E+E+EE++EE E + E + E+
Sbjct: 3 EQVNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREK 62
Query: 653 VR 654
R
Sbjct: 63 AR 64
Score = 42.5 bits (100), Expect = 7e-04
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E+EEE E + +++E E ++E+EE++EE E + E + E+ ++
Sbjct: 9 ANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLK 66
Score = 41.7 bits (98), Expect = 0.002
Identities = 21/69 (30%), Positives = 38/69 (55%), Gaps = 6/69 (8%)
Query: 599 EREEEEEEEEEE------EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ EEE+EEE E + +++E E+E+ EE++EE E + E + E+ +E
Sbjct: 8 QANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKARLKE 67
Query: 653 VRGGGKEEI 661
++ K+EI
Sbjct: 68 LKKQKKQEI 76
Score = 40.2 bits (94), Expect = 0.004
Identities = 15/76 (19%), Positives = 41/76 (53%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ E ++ + R + +++E E+E+E+EE++EE E + E + E+
Sbjct: 5 VNTQANEEEDEEELEAVARSAGSDSDDDEVPAEDEDEDEEDDEEAESPAKAEISKREKAR 64
Query: 639 EEEEEEEEEEEEEEVR 654
+E ++++++E +++
Sbjct: 65 LKELKKQKKQEIQKIL 80
Score = 33.6 bits (77), Expect = 0.44
Identities = 10/42 (23%), Positives = 22/42 (52%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E+E + ++ + ++ + E EE + EE+EE+E+
Sbjct: 777 EKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQ 818
Score = 32.1 bits (73), Expect = 1.3
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+E + ++ + ++ + E EE + EE+EE+E+ EE
Sbjct: 777 EKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEE 822
Score = 31.3 bits (71), Expect = 2.1
Identities = 12/46 (26%), Positives = 24/46 (52%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E+E + ++ + ++ + E EE + EE+EE+E+ EE
Sbjct: 777 EKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEE 822
Score = 31.3 bits (71), Expect = 2.3
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E+E + ++ ++++ + E EE + EE+EE+E++ G
Sbjct: 777 EKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEEG 823
Score = 30.9 bits (70), Expect = 2.5
Identities = 12/54 (22%), Positives = 28/54 (51%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
++ + +L + R + ++ + ++ + E EE + EE+EE+E+ EE
Sbjct: 769 VQRLTELYEKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEEQEEKEQLLEE 822
Score = 30.5 bits (69), Expect = 4.1
Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 8/70 (11%)
Query: 586 PRIENIIQL--------IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
PRI + QL R E E+E + ++ + ++ + E +E + EE
Sbjct: 753 PRIPRMPQLHDFQFFNVQRLTELYEKEVRYLMQAHQKGQLKDTIDVAEPEEPGDPLTAEE 812
Query: 638 EEEEEEEEEE 647
+EE+E+ EE
Sbjct: 813 QEEKEQLLEE 822
>gnl|CDD|218258 pfam04774, HABP4_PAI-RBP1, Hyaluronan / mRNA binding family. This
family includes the HABP4 family of hyaluronan-binding
proteins, and the PAI-1 mRNA-binding protein, PAI-RBP1.
HABP4 has been observed to bind hyaluronan (a
glucosaminoglycan), but it is not known whether this is
its primary role in vivo. It has also been observed to
bind RNA, but with a lower affinity than that for
hyaluronan. PAI-1 mRNA-binding protein specifically
binds the mRNA of type-1 plasminogen activator inhibitor
(PAI-1), and is thought to be involved in regulation of
mRNA stability. However, in both cases, the sequence
motifs predicted to be important for ligand binding are
not conserved throughout the family, so it is not known
whether members of this family share a common function.
Length = 106
Score = 53.2 bits (128), Expect = 1e-08
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++E E EE+ EEEE+ E EE Q EEE +E EEEE EEEE++E
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 51.6 bits (124), Expect = 3e-08
Identities = 25/51 (49%), Positives = 35/51 (68%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
G ++E E EE+ EEEE+ E EE++ V+EE +E EEEE EEEE++E
Sbjct: 28 GSVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 50.9 bits (122), Expect = 5e-08
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++E E EE+ EEEE+ E EE+ EEE +E EEEE EEEE++E
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 50.5 bits (121), Expect = 9e-08
Identities = 24/49 (48%), Positives = 33/49 (67%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
++E E EE+ EEEE+ E EE++ EEE +E EEEE EEEE++E
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKE 78
Score = 49.3 bits (118), Expect = 2e-07
Identities = 22/46 (47%), Positives = 29/46 (63%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++E E EE+ EEEE+ EE++ EEE +E EEEE EEEE
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEE 75
Score = 48.6 bits (116), Expect = 3e-07
Identities = 23/47 (48%), Positives = 32/47 (68%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++E E EE+ EEEE+ EV+E++ EEE +E EEEE EEEE+
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEED 76
Score = 46.6 bits (111), Expect = 2e-06
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++E E EE+ EEEE E EE++ EEE +E EEEE EE
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEE 74
Score = 46.3 bits (110), Expect = 2e-06
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++E E EE+ EEEE+ E +++ EEE +E EEEE EEEE++
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDK 77
Score = 45.5 bits (108), Expect = 5e-06
Identities = 26/54 (48%), Positives = 35/54 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE+ EEEE+ E EE++ EEE +E EEEE EEEE++E EE E+ +E
Sbjct: 37 LTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEKALQE 90
Score = 41.6 bits (98), Expect = 9e-05
Identities = 26/64 (40%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
GS + E I +L EEE+ E EE++ EEE +E EE + EEEE++E EE E+
Sbjct: 28 GSVKDE-IAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEK 86
Query: 644 EEEE 647
+E
Sbjct: 87 ALQE 90
Score = 40.5 bits (95), Expect = 3e-04
Identities = 20/52 (38%), Positives = 31/52 (59%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
++E E EE+ E +E+ E EE++ EEE +E EEEEV +E++L
Sbjct: 30 VKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTL 81
Score = 35.5 bits (82), Expect = 0.014
Identities = 18/64 (28%), Positives = 27/64 (42%), Gaps = 9/64 (14%)
Query: 575 WKTSDQD-----EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE----EEEE 625
W + + E E ++ EE +E EEEE EEEE++E E E+
Sbjct: 27 WGSVKDEIAELTEEQGEEEEKNEVEEKQAVEEEANKEGVVEEEEVEEEEDKEMTLEEYEK 86
Query: 626 VQEE 629
+E
Sbjct: 87 ALQE 90
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein.
Length = 529
Score = 57.9 bits (140), Expect = 1e-08
Identities = 28/65 (43%), Positives = 44/65 (67%), Gaps = 3/65 (4%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE---EEEEE 648
I L E E+E +EEEEEE+EE++EEEE+ + +EE +EEEE+EE++++ +E
Sbjct: 23 IYLWVEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVKETTT 82
Query: 649 EEEEV 653
E E +
Sbjct: 83 EWELL 87
Score = 52.8 bits (127), Expect = 4e-07
Identities = 24/51 (47%), Positives = 43/51 (84%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+E E+E +EEEEEE+EE++E +E+ ++EEE +EEEE+EE++++ ++V+
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEEKKKKTKKVK 78
Score = 46.3 bits (110), Expect = 4e-05
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E+E E+EV +EEEEEE+EE++EEEE+ ++EEE KEE
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEE 69
Score = 44.8 bits (106), Expect = 1e-04
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E+E E+E EEEEEE+EE++EEEE+ ++EEE + +E
Sbjct: 28 EKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEVDEEEEKEE 69
Score = 39.4 bits (92), Expect = 0.006
Identities = 17/33 (51%), Positives = 24/33 (72%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+E+EEV+EE+EE E E E EE+ E+ + EEV
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEEV 528
Score = 38.6 bits (90), Expect = 0.011
Identities = 18/45 (40%), Positives = 28/45 (62%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
I ++I+ G +E+EE EEE+EE E E E EE+ ++ + EE
Sbjct: 483 SRIYRMIKLGLSIDEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 38.2 bits (89), Expect = 0.015
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 37.8 bits (88), Expect = 0.018
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
RI +I+L + +EE EEE+EE E E E EE+ E+ + EE
Sbjct: 484 RIYRMIKLGLSIDEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 37.1 bits (86), Expect = 0.030
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+E+EE EEE+EE E E E +E+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 36.7 bits (85), Expect = 0.041
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+E+EE EEE+EE E E E EE E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 36.7 bits (85), Expect = 0.045
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+E+EE EEE+EE EV+ E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.9 bits (83), Expect = 0.069
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+E+EE EEE+ + E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.9 bits (83), Expect = 0.082
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+E+EE EEE+EE E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.083
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+E+EE EEE+EE E E + EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.094
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+E+EE EEE+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.10
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+E+EE EEE+EE E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.5 bits (82), Expect = 0.10
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+E+EE EEE+EE E E E E E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 35.1 bits (81), Expect = 0.11
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
V++E E+E +EEEEEE+EE++EEEE+ +E
Sbjct: 27 VEKEVEKEVPDEEEEEEKEEKKEEEEKTTDKEEEV 61
Score = 34.7 bits (80), Expect = 0.17
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+E+EE EEE+EE E E E ++ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 34.4 bits (79), Expect = 0.21
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+E+EE +E+EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 34.4 bits (79), Expect = 0.22
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+E+EE EEE+EE + E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 34.4 bits (79), Expect = 0.22
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+E+EE EEE +E E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 34.4 bits (79), Expect = 0.23
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E+EE EEE+E E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 34.0 bits (78), Expect = 0.25
Identities = 15/32 (46%), Positives = 20/32 (62%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+E+EE EE EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 34.0 bits (78), Expect = 0.26
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+E+EE E ++EE E E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 34.0 bits (78), Expect = 0.32
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+E+EE EEE+EE E E EE+ E+ + EE
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEE 527
Score = 33.2 bits (76), Expect = 0.47
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+E+EE EEE+EE E E E EE+ EE+
Sbjct: 496 DEDEEVEEEDEEAEVETTEPAEEDAEDSKMEEV 528
Score = 31.7 bits (72), Expect = 1.5
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E+EE EEE+EE E E E EE+ E
Sbjct: 495 IDEDEEVEEEDEEAEVETTEPAEEDAE 521
>gnl|CDD|221275 pfam11861, DUF3381, Domain of unknown function (DUF3381). This
domain is functionally uncharacterized. This domain is
found in eukaryotes. This presumed domain is typically
between 156 to 174 amino acids in length. This domain is
found associated with pfam07780, pfam01728.
Length = 154
Score = 54.2 bits (131), Expect = 1e-08
Identities = 21/54 (38%), Positives = 37/54 (68%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+++E+EEEEEEE E EE +EEE++ E E+E + + E+ E E +++E ++
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILK 148
Score = 51.5 bits (124), Expect = 1e-07
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
G ++E+EEEEEEE E EE +EEE+ +E+ E+E + + E+ E E +++E
Sbjct: 95 GLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEI 146
Score = 49.6 bits (119), Expect = 4e-07
Identities = 21/56 (37%), Positives = 41/56 (73%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+++E+EEEEEEE E EE +EEE+ +E +++E + + E+ E E +++E +E+++
Sbjct: 97 DKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEILKEQMK 152
Score = 49.6 bits (119), Expect = 4e-07
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ +++E+EEEEEEE E EE+ EEE+ +E E+E + + E+ E E
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENE 140
Score = 49.6 bits (119), Expect = 5e-07
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R+ +++E+EEEEEEE E EE +E ++ +E E+E + + E+ E E ++
Sbjct: 91 RKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKE 145
Score = 47.7 bits (114), Expect = 2e-06
Identities = 20/57 (35%), Positives = 37/57 (64%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+ ++ L ++ + EEEEEE E EE +EEE+ +E E+E+ + + E+ E E +++E
Sbjct: 90 VRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEI 146
Score = 45.4 bits (108), Expect = 1e-05
Identities = 19/52 (36%), Positives = 33/52 (63%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
R++ + +++E+EEEEEEE E E +EEE+ +E E+E + + E+ E
Sbjct: 87 RKKVRKLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRE 138
Score = 45.4 bits (108), Expect = 1e-05
Identities = 19/56 (33%), Positives = 33/56 (58%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+ +++E+EEEEEEE E + +EEE+ +E E+E + + E+ E KE +
Sbjct: 92 KLLGLDKKEKEEEEEEEVEVEELDEEEQIDELLEKELAKLKREKRRENERKQKEIL 147
Score = 29.6 bits (67), Expect = 2.9
Identities = 13/29 (44%), Positives = 22/29 (75%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++V++ +++E+EEEEEEE E EE +E
Sbjct: 88 KKVRKLLGLDKKEKEEEEEEEVEVEELDE 116
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein.
This family represents Cwf15/Cwc15 (from
Schizosaccharomyces pombe and Saccharomyces cerevisiae
respectively) and their homologues. The function of
these proteins is unknown, but they form part of the
spliceosome and are thus thought to be involved in mRNA
splicing.
Length = 241
Score = 55.9 bits (135), Expect = 1e-08
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 11/98 (11%)
Query: 567 TIRPSIKVWKTSDQDEIGSPRI------ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEE 620
++ D+D+ I E+ + + +++ ++++ E+E
Sbjct: 84 DKSTNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSEDE 143
Query: 621 EEE-----EEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E++++E EE+E EEEE+ EEE+ EEE+
Sbjct: 144 TAALLRELEKIKKERAEEKEREEEEKAAEEEKAREEEI 181
Score = 41.6 bits (98), Expect = 6e-04
Identities = 9/65 (13%), Positives = 32/65 (49%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+ + N+ E ++EE+E + + EE+ + ++ + + + +++ ++++ E
Sbjct: 82 DADKSTNLDASNEGDEDDDEEDEIKRKRIEEDARNSDADDSDSSSDSDSSDDDSDDDDSE 141
Query: 644 EEEEE 648
+E
Sbjct: 142 DETAA 146
>gnl|CDD|227701 COG5414, COG5414, TATA-binding protein-associated factor
[Transcription].
Length = 392
Score = 57.0 bits (137), Expect = 2e-08
Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 3/116 (2%)
Query: 547 LMNSEWQSLWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEE 606
L E S W+N RP++K K ++E E + + G E E +E
Sbjct: 232 LARQERVSSWENFKEEPGEPLSRPALKKEKQGAEEEGEEGMSEEDLDV---GAAEIENKE 288
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E ++E+++EE E E +E + + +E EE+EE++E EE E +E++
Sbjct: 289 VSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELN 344
Score = 47.8 bits (113), Expect = 1e-05
Identities = 29/108 (26%), Positives = 49/108 (45%), Gaps = 6/108 (5%)
Query: 563 NKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEE------EEEEE 616
++ + R + ++E G P ++ ++G EE EE EE+ E E +
Sbjct: 228 DEKELARQERVSSWENFKEEPGEPLSRPALKKEKQGAEEEGEEGMSEEDLDVGAAEIENK 287
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
E E ++E+ QEE E E +EE + + +E EE+ EE H
Sbjct: 288 EVSEGDKEQQQEEVENAEAHKEEVQSDRPDEIGEEKEEDDENEENERH 335
Score = 40.8 bits (95), Expect = 0.002
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E +EE + + +E EE+EE++E EE + E +E E E+ EE+ + E
Sbjct: 304 AEAHKEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRRQME 358
Score = 40.5 bits (94), Expect = 0.002
Identities = 18/51 (35%), Positives = 28/51 (54%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE + + +E EE+EE++E EE E E +E E E+ EE+ + E
Sbjct: 309 EEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRRQMES 359
Score = 38.1 bits (88), Expect = 0.013
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E + + +E EE+EE++E EE E + +E E E+ EE+ + E
Sbjct: 308 KEEVQSDRPDEIGEEKEEDDENEENERHTELLADELNELEKGIEEKRRQMES 359
>gnl|CDD|114172 pfam05432, BSP_II, Bone sialoprotein II (BSP-II). Bone
sialoprotein (BSP) is a major structural protein of the
bone matrix that is specifically expressed by
fully-differentiated osteoblasts. The expression of bone
sialoprotein (BSP) is normally restricted to mineralised
connective tissues of bones and teeth where it has been
associated with mineral crystal formation. However, it
has been found that ectopic expression of BSP occurs in
various lesions, including oral and extraoral
carcinomas, in which it has been associated with the
formation of microcrystalline deposits and the
metastasis of cancer cells to bone.
Length = 291
Score = 55.9 bits (134), Expect = 2e-08
Identities = 30/97 (30%), Positives = 39/97 (40%), Gaps = 13/97 (13%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE-------------EEEEE 642
++ +E+E +E+EEEEEEEEEEE E EE E E EE EE
Sbjct: 127 KKATKEDESDEDEEEEEEEEEEEAEVEENEQGTNGTSTNSTEVDHGNGSSGGDNGEEGEE 186
Query: 643 EEEEEEEEEEVRGGGKEEISLHFYVLYVLSKGKIAGL 679
E E E E G S + ++ G
Sbjct: 187 ESVTEAEAEGTTVAGPTTTSPNGGFQPTTPPQEVYGT 223
Score = 48.5 bits (115), Expect = 5e-06
Identities = 32/105 (30%), Positives = 40/105 (38%), Gaps = 45/105 (42%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEE-------------------------------- 625
G+ EEE EEE EEE E+ + E+E
Sbjct: 57 GDSSEEEGEEETSNEEENNEDSDGNEDEEAEAENTTLSTVTLGYGGDATPGTGNIGLAAL 116
Query: 626 -------------VQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+E+E +E+EEEEEEEEEEE E EE E G
Sbjct: 117 QLPKKAGNAGKKATKEDESDEDEEEEEEEEEEEAEVEENEQGTNG 161
Score = 40.8 bits (95), Expect = 0.002
Identities = 28/107 (26%), Positives = 37/107 (34%), Gaps = 49/107 (45%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE---------------- 638
++ G EE + + EEE EEE EEE ++ + E+EE E
Sbjct: 44 VQSGSDSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAENTTLSTVTLGYGGD 103
Query: 639 ---------------------------------EEEEEEEEEEEEEE 652
E+EEEEEEEEEEE
Sbjct: 104 ATPGTGNIGLAALQLPKKAGNAGKKATKEDESDEDEEEEEEEEEEEA 150
Score = 38.5 bits (89), Expect = 0.007
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
++R + + EE + + EEE EEE +EE E+ + E+EE E E
Sbjct: 39 LKRFSVQSGSDSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 36.6 bits (84), Expect = 0.037
Identities = 17/51 (33%), Positives = 25/51 (49%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
L R + + EE + + EEE EEE +E E+ + E+EE E E
Sbjct: 39 LKRFSVQSGSDSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAE 89
Score = 34.7 bits (79), Expect = 0.12
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+ EE + + EEE EEE EEE E+ + E+EE
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAEN 90
Score = 34.3 bits (78), Expect = 0.18
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ EE + + +E EEE EEE E+ + E+EE E
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAEN 90
Score = 33.1 bits (75), Expect = 0.40
Identities = 15/45 (33%), Positives = 20/45 (44%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
+ EE + EEE EEE EEE E+ + E E +L
Sbjct: 49 DSSEENGDGDSSEEEGEEETSNEEENNEDSDGNEDEEAEAENTTL 93
>gnl|CDD|227466 COG5137, COG5137, Histone chaperone involved in gene silencing
[Transcription / Chromatin structure and dynamics].
Length = 279
Score = 55.8 bits (134), Expect = 2e-08
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 11/92 (11%)
Query: 574 VWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEE-----EEEEEVQE 628
VW + ++ P ++ EEE EE + EEEE+EE E E+ E
Sbjct: 157 VWDNDEDNDEAPPAQPDV------DNEEEERLEESDGREEEEDEEVGSDSYGEGNRELNE 210
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EEEEE E ++ E+ + E E + + G +EE
Sbjct: 211 EEEEEAEGSDDGEDVVDYEGERIDKKQGEEEE 242
Score = 51.5 bits (123), Expect = 5e-07
Identities = 25/55 (45%), Positives = 33/55 (60%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
G RE EEEEEE E ++ E+ + E E ++++ EEEE EEE E E EEE
Sbjct: 204 GNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEE 258
Score = 49.2 bits (117), Expect = 3e-06
Identities = 25/57 (43%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 598 GEREEEEEEEEEEEEEEEEEEE---EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
GE E EEEEEE E ++ E + E E + +++ EEEE EEE E E EEE
Sbjct: 202 GEGNRELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEE 258
Score = 47.3 bits (112), Expect = 1e-05
Identities = 24/57 (42%), Positives = 30/57 (52%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R EEEEE E ++ E+ + E E ++ Q EEEE EEE E E EEE E
Sbjct: 206 RELNEEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSE 262
Score = 46.5 bits (110), Expect = 2e-05
Identities = 24/55 (43%), Positives = 31/55 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E EEEE E ++ E+ + E E +++ EEEE EEE E E EEE EEV
Sbjct: 210 EEEEEEAEGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEV 264
Score = 45.0 bits (106), Expect = 7e-05
Identities = 18/61 (29%), Positives = 29/61 (47%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E+ + +E+ +E + +V EEEE EE + EEEE+EE + G +
Sbjct: 147 EKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSYGEGNR 206
Query: 659 E 659
E
Sbjct: 207 E 207
Score = 44.2 bits (104), Expect = 1e-04
Identities = 23/82 (28%), Positives = 35/82 (42%), Gaps = 12/82 (14%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE---- 644
I+ R R + +E+ +E + + + EE + EE + EEEE+EE
Sbjct: 142 REILAEKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDSY 201
Query: 645 --------EEEEEEEEVRGGGK 658
EEEEEE E G+
Sbjct: 202 GEGNRELNEEEEEEAEGSDDGE 223
Score = 43.4 bits (102), Expect = 2e-04
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 599 EREEEEEEEEEE-----EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
ERE E+ + +E+ +E + + EEEE EE + EEEE+EE +
Sbjct: 141 EREILAEKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLEESDGREEEEDEEVGSDS 200
Query: 654 RGGGKEEIS 662
G G E++
Sbjct: 201 YGEGNRELN 209
Score = 41.9 bits (98), Expect = 6e-04
Identities = 18/82 (21%), Positives = 35/82 (42%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
++ ++ P + + + R E+ + +E+ +E + + EEEE E
Sbjct: 124 EKSDVEEPSEKVDEEDVEREILAEKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEEERLE 183
Query: 639 EEEEEEEEEEEEEEVRGGGKEE 660
E + EEEE+EE G+
Sbjct: 184 ESDGREEEEDEEVGSDSYGEGN 205
Score = 40.0 bits (93), Expect = 0.003
Identities = 23/83 (27%), Positives = 37/83 (44%), Gaps = 19/83 (22%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEE-------------------EEEEEEEEEEEEVQE 628
+ N I + E+ + EE E+ +EE + +E+ +E Q
Sbjct: 113 VNNEYPGITKLEKSDVEEPSEKVDEEDVEREILAEKPRVTRFNIVWDNDEDNDEAPPAQP 172
Query: 629 EEEEEEEEEEEEEEEEEEEEEEE 651
+ + EEEE EE + EEEE+EE
Sbjct: 173 DVDNEEEERLEESDGREEEEDEE 195
Score = 36.5 bits (84), Expect = 0.034
Identities = 20/63 (31%), Positives = 31/63 (49%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ + G ++ + I + + EEEE EEE E E EEE EEV EE +++
Sbjct: 217 EGSDDGEDVVDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQ 276
Query: 639 EEE 641
+ E
Sbjct: 277 KVE 279
Score = 35.4 bits (81), Expect = 0.068
Identities = 19/50 (38%), Positives = 27/50 (54%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
GER ++++ EEEE EEE E E EE EE EE ++++ E
Sbjct: 230 GERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQKVE 279
Score = 34.2 bits (78), Expect = 0.17
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 4/73 (5%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEE--EEEEEEEEEEVQEEEEEEEEEEEEEEEE--EEEE 647
I + + + EE E+ +EE+ E E E+ + + +E+ +E + + EEE
Sbjct: 120 ITKLEKSDVEEPSEKVDEEDVEREILAEKPRVTRFNIVWDNDEDNDEAPPAQPDVDNEEE 179
Query: 648 EEEEEVRGGGKEE 660
E EE G +EE
Sbjct: 180 ERLEESDGREEEE 192
Score = 34.2 bits (78), Expect = 0.18
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ E E ++++ EEEE EEE E EEE EE EE ++++ E
Sbjct: 226 VDYEGERIDKKQGEEEEMEEEVINLFEIEWEEESPSEEVPRNNEESPAKKQKVE 279
>gnl|CDD|218303 pfam04874, Mak16, Mak16 protein C-terminal region. The precise
function of this eukaryotic protein family is unknown.
The yeast orthologues have been implicated in cell cycle
progression and biogenesis of 60S ribosomal subunits.
The Schistosoma mansoni Mak16 has been shown to target
protein transport to the nucleolus.
Length = 97
Score = 51.8 bits (124), Expect = 2e-08
Identities = 28/52 (53%), Positives = 34/52 (65%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
NI Q + E EE EE +EEEEEEEEEE+E E E ++EE EEE E+ E
Sbjct: 45 NISQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 50.3 bits (120), Expect = 8e-08
Identities = 24/45 (53%), Positives = 33/45 (73%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
++ E EE EE +EEEEEEEEEE+E E++ ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 49.9 bits (119), Expect = 9e-08
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++ E EE EE +EEEEEEEEEE+ E E ++EE EEE E+ E
Sbjct: 49 SAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 48.7 bits (116), Expect = 2e-07
Identities = 24/45 (53%), Positives = 31/45 (68%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
++ E EE EE +EEEEEEEEEE + E E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 48.3 bits (115), Expect = 4e-07
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++ E EE EE +EEEEEEEEE E E E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 47.6 bits (113), Expect = 7e-07
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++ E EE EE +EEEEEEE +E+E E E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 47.6 bits (113), Expect = 7e-07
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ ++ E EE EE +EEEEEEEE ++E E E ++EE EEE E+ E
Sbjct: 47 SQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 47.2 bits (112), Expect = 9e-07
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ E EE EE +EEEEEE +EE+E E E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 46.8 bits (111), Expect = 1e-06
Identities = 23/45 (51%), Positives = 31/45 (68%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ E EE EE +EEEEE +EEE+E E E ++EE EEE E+ E
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 43.7 bits (103), Expect = 2e-05
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++ E EE EE + +EEEEEEEE+E E E ++EE EEE+
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEI 92
Score = 41.8 bits (98), Expect = 8e-05
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
+ ++ E +EEEEEEEEEE+E E E ++EE +E E+ E
Sbjct: 50 AFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
Score = 40.2 bits (94), Expect = 3e-04
Identities = 19/42 (45%), Positives = 27/42 (64%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
++ ++ EE EE +EEEEEEEEEE+E E E V + E +
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIE 93
Score = 39.1 bits (91), Expect = 7e-04
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
++ E EE +E +EEEEEEEEEE+E E E ++E E++
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDL 95
Score = 37.9 bits (88), Expect = 0.002
Identities = 20/42 (47%), Positives = 26/42 (61%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
++ E +E EE +EEEEEEEEEE+E E E +EEI
Sbjct: 52 KKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIE 93
Score = 34.1 bits (78), Expect = 0.040
Identities = 16/29 (55%), Positives = 21/29 (72%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ ++ E EE EE +EEEEEEEEEE+E
Sbjct: 48 QSAFKKALEAEESEENDEEEEEEEEEEDE 76
Score = 29.8 bits (67), Expect = 1.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYVLYV 670
+ + ++ E EE EE +EEEEEEEE G+ E L
Sbjct: 46 ISQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEE 90
Score = 27.9 bits (62), Expect = 5.9
Identities = 13/50 (26%), Positives = 21/50 (42%)
Query: 571 SIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEE 620
S +K + + E E + + E E ++EE EEE E+ E
Sbjct: 47 SQSAFKKALEAEESEENDEEEEEEEEEEDEGEIEYVSDDEELEEEIEDLE 96
>gnl|CDD|187697 cd09273, RNase_HI_RT_Bel, Bel/Pao family of RNase HI in long-term
repeat retroelements. Ribonuclease H (RNase H) enzymes
are divided into two major families, Type 1 and Type 2,
based on amino acid sequence similarities and
biochemical properties. RNase H is an endonuclease that
cleaves the RNA strand of an RNA/DNA hybrid in a
sequence non-specific manner in the presence of divalent
cations. RNase H is widely present in various organisms,
including bacteria, archaea and eukaryote. RNase HI has
also been observed as adjunct domains to the reverse
transcriptase gene in retroviruses, in long-term repeat
(LTR)-bearing retrotransposons and non-LTR
retrotransposons. RNase HI in LTR retrotransposons
perform degradation of the original RNA template,
generation of a polypurine tract (the primer for
plus-strand DNA synthesis), and final removal of RNA
primers from newly synthesized minus and plus strands.
The catalytic residues for RNase H enzymatic activity,
three aspartatic acids and one glutamatic acid residue
(DEDD), are unvaried across all RNase H domains.
Phylogenetic patterns of RNase HI of LTR retroelements
is classified into five major families, Ty3/Gypsy,
Ty1/Copia, Bel/Pao, DIRS1 and the vertebrate
retroviruses. Bel/Pao family has been described only in
metazoan genomes. RNase H inhibitors have been explored
as an anti-HIV drug target because RNase H inactivation
inhibits reverse transcription.
Length = 135
Score = 53.0 bits (128), Expect = 2e-08
Identities = 33/134 (24%), Positives = 49/134 (36%), Gaps = 19/134 (14%)
Query: 331 CYTDGSKTPTTTGCA-YSVGNVVRSTLLNPVNSIFSAELIAIFLCLEAILDSPSGKFLIV 389
+TDGS G A + +V+ L S AELIA+ + A+ + I
Sbjct: 2 VFTDGSSFVRKAGYAVVTGPDVLEIATLPYGTSAQRAELIAL---IRALELAKGKPVNIY 58
Query: 390 TDSR---SSLAALSNVRFINPLIT----KVYSTWSYLK---LCKKDITFMWCPSHCG--- 436
TDS L AL + +T + S L+ K + + +H G
Sbjct: 59 TDSAYAFGILHALETIWKERGFLTGKPIALASLILQLQKAIQRPKPVAVIHIRAHSGLPG 118
Query: 437 --IKGNEIVDVAAK 448
GN D AA+
Sbjct: 119 PLALGNARADQAAR 132
>gnl|CDD|187690 cd06222, RNase_H, RNase H is an endonuclease that cleaves the RNA
strand of an RNA/DNA hybrid in a sequence non-specific
manner. Ribonuclease H (RNase H) enzymes are divided
into two major families, Type 1 and Type 2, based on
amino acid sequence similarities and biochemical
properties. RNase H is an endonuclease that cleaves the
RNA strand of an RNA/DNA hybrid in a sequence
non-specific manner in the presence of divalent cations.
RNase H is widely present in various organisms,
including bacteria, archaea and eukaryotes. Most
prokaryotic and eukaryotic genomes contain multiple
RNase H genes. Despite the lack of amino acid sequence
homology, Type 1 and type 2 RNase H share a main-chain
fold and steric configurations of the four acidic
active-site residues and have the same catalytic
mechanism and functions in cells. RNase H is involved in
DNA replication, repair and transcription. One of the
important functions of RNase H is to remove Okazaki
fragments during DNA replication. RNase H inhibitors
have been explored as an anti-HIV drug target because
RNase H inactivation inhibits reverse transcription.
Length = 123
Score = 52.4 bits (126), Expect = 2e-08
Identities = 33/128 (25%), Positives = 47/128 (36%), Gaps = 15/128 (11%)
Query: 332 YTDGSKTPTTTGCAYSVGNVVR---------STLLNPVNSIFSAELIAIFLCLEAILDSP 382
TDGS G V+R +L P + AEL+A+ LE LD
Sbjct: 1 NTDGSCKGN--PGPAGAGGVLRDHEGAWLFAGSLSIPAATNNEAELLALLEALELALDLG 58
Query: 383 SGKFLIVTDSRSSLAALSNVRFINPLITKVYSTWSYLKLCKKDITFMWCPSHCGIKGNEI 442
K +I TDS+ + +++ + L DI F P +GNE+
Sbjct: 59 LKKLIIETDSKYVVDLINSWSKGWKKNNLLLWDILLLLSKFIDIRFEHVPR----EGNEV 114
Query: 443 VDVAAKNP 450
D AK
Sbjct: 115 ADRLAKEA 122
>gnl|CDD|225368 COG2811, NtpF, Archaeal/vacuolar-type H+-ATPase subunit H [Energy
production and conversion].
Length = 108
Score = 51.6 bits (124), Expect = 3e-08
Identities = 28/75 (37%), Positives = 39/75 (52%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ I + + E EE +EE E+ +E EE E E EEE E+ +E EE EE E
Sbjct: 9 LREIKKAEISADEEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAE 68
Query: 648 EEEEEVRGGGKEEIS 662
EE EE+ ++E S
Sbjct: 69 EEAEEILAEAEKEAS 83
Score = 42.0 bits (99), Expect = 7e-05
Identities = 25/64 (39%), Positives = 31/64 (48%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E I + E+ +E EE E EE EEE E+ + EE EE EEE EE E E+
Sbjct: 21 EEIEEAKEEAEQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEK 80
Query: 649 EEEE 652
E
Sbjct: 81 EASA 84
Score = 31.6 bits (72), Expect = 0.39
Identities = 26/74 (35%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEE-------EEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E II+ R RE EE EEE E+ E EE EEE EE + E E+E +
Sbjct: 31 EQIIKEAREEAREIIEEAEEEAEKLAQEILEEAREEAEEEAEEILAEAEKEASAILSKAA 90
Query: 642 EEEEEEEEEEEVRG 655
E + E E
Sbjct: 91 EGKVVEAALSEFLA 104
>gnl|CDD|236545 PRK09510, tolA, cell envelope integrity inner membrane protein
TolA; Provisional.
Length = 387
Score = 55.6 bits (134), Expect = 4e-08
Identities = 15/78 (19%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 575 WKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+ Q + + R E R+ + +++ EE ++++ E+E ++ E+E + +E++++
Sbjct: 64 YNRQQQQQKSAKRAEEQ----RKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQ 119
Query: 635 EEEEEEEEEEEEEEEEEE 652
EE ++ ++++ EE
Sbjct: 120 AEEAAKQAALKQKQAEEA 137
Score = 47.9 bits (114), Expect = 1e-05
Identities = 11/51 (21%), Positives = 33/51 (64%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE+ +++E+++ EE ++++ E + ++ E+E +E++++ EE ++
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAA 128
Score = 47.5 bits (113), Expect = 1e-05
Identities = 12/62 (19%), Positives = 32/62 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E ++++ E+E ++ E+E +E++ Q EE ++ ++++ EE + + +
Sbjct: 91 ELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAE 150
Query: 659 EE 660
E
Sbjct: 151 AE 152
Score = 47.5 bits (113), Expect = 2e-05
Identities = 12/53 (22%), Positives = 32/53 (60%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE+ +++E+++ EE +++ E+E ++ E+E +E++++ EE +
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALK 130
Score = 42.1 bits (99), Expect = 7e-04
Identities = 12/75 (16%), Positives = 30/75 (40%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+ + + R + E+E +E++++ EE ++ ++ Q EE + + + E
Sbjct: 92 LQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEA 151
Query: 646 EEEEEEEVRGGGKEE 660
E + E
Sbjct: 152 EAKRAAAAAKKAAAE 166
Score = 42.1 bits (99), Expect = 7e-04
Identities = 13/65 (20%), Positives = 33/65 (50%), Gaps = 3/65 (4%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE---EEE 649
+L ++ E+E ++ E+E +E++++ EE ++ ++++ EE + + E
Sbjct: 91 ELQQKQAAEQERLKQLEKERLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAE 150
Query: 650 EEEVR 654
E R
Sbjct: 151 AEAKR 155
Score = 38.2 bits (89), Expect = 0.011
Identities = 10/65 (15%), Positives = 28/65 (43%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
R +E++++ EE ++ ++++ EE + + E E + ++ E +
Sbjct: 110 RLAAQEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKK 169
Query: 656 GGKEE 660
+ E
Sbjct: 170 KAEAE 174
Score = 33.6 bits (77), Expect = 0.29
Identities = 10/54 (18%), Positives = 27/54 (50%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E +++ E E ++ E +++ E E + E +++ E E +++ E ++
Sbjct: 164 AAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKK 217
Score = 33.2 bits (76), Expect = 0.43
Identities = 9/52 (17%), Positives = 23/52 (44%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E + ++ E +++ E E ++ E +++ E E + E ++
Sbjct: 150 EAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKK 201
Score = 32.9 bits (75), Expect = 0.58
Identities = 10/53 (18%), Positives = 28/53 (52%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E +++ E E ++ E +++ E E + E +++ E E +++ E +++
Sbjct: 166 EAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Score = 32.5 bits (74), Expect = 0.71
Identities = 9/65 (13%), Positives = 25/65 (38%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ ++++ EE + + + E E + ++ E +++ E E ++
Sbjct: 124 AKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEA 183
Query: 656 GGKEE 660
K E
Sbjct: 184 KKKAE 188
Score = 32.5 bits (74), Expect = 0.81
Identities = 10/53 (18%), Positives = 26/53 (49%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E E ++ E +++ E E + E +++ E E +++ E +++ E
Sbjct: 170 KAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKKAAAE 222
Score = 32.1 bits (73), Expect = 0.89
Identities = 9/62 (14%), Positives = 24/62 (38%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ EE ++ ++++ EE + + E E + ++ E +++ E K
Sbjct: 119 QAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEAEAAKK 178
Query: 659 EE 660
Sbjct: 179 AA 180
Score = 31.7 bits (72), Expect = 1.3
Identities = 9/34 (26%), Positives = 24/34 (70%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EE+ +++E+++ EE ++++ E+E ++ KE +
Sbjct: 78 EEQRKKKEQQQAEELQQKQAAEQERLKQLEKERL 111
Score = 31.3 bits (71), Expect = 1.6
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 3/55 (5%)
Query: 601 EEE---EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + E E ++ E +++ E E + E +++ E E +++ E +++
Sbjct: 164 AAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Score = 30.9 bits (70), Expect = 2.1
Identities = 10/55 (18%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEE--EEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R ++ E +++ E E + E +++ E E + E +++ E E ++
Sbjct: 155 RAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKK 209
Score = 30.9 bits (70), Expect = 2.1
Identities = 8/60 (13%), Positives = 25/60 (41%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
Q ++ E ++ ++++ EE + + + E E + ++ E +++ E
Sbjct: 114 QEQKKQAEEAAKQAALKQKQAEEAAAKAAAAAKAKAEAEAKRAAAAAKKAAAEAKKKAEA 173
Score = 30.5 bits (69), Expect = 2.8
Identities = 9/53 (16%), Positives = 23/53 (43%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E + ++ E +++ E E + E +++ E E + E +++
Sbjct: 150 EAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202
Score = 30.5 bits (69), Expect = 3.1
Identities = 10/55 (18%), Positives = 26/55 (47%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E +++ E E ++ E ++ E E + E +++ E E +++ K++
Sbjct: 164 AAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKKAEAEAKKKAAAEAKKK 218
Score = 30.5 bits (69), Expect = 3.2
Identities = 8/53 (15%), Positives = 22/53 (41%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E + ++ E +++ E ++ E +++ E E + E + +
Sbjct: 150 EAEAKRAAAAAKKAAAEAKKKAEAEAAKKAAAEAKKKAEAEAAAKAAAEAKKK 202
>gnl|CDD|222571 pfam14153, Spore_coat_CotO, Spore coat protein CotO. Bacillus
spores are protected by a protein shell consisting of
over 50 different polypeptides, known as the coat. This
family of proteins has an important morphogenetic role
in coat assembly, it is involved in the assembly of at
least 5 different coat proteins including CotB, CotG,
CotS, CotSA and CotW. It is likely to act at a late
stage of coat assembly.
Length = 185
Score = 53.3 bits (128), Expect = 5e-08
Identities = 25/55 (45%), Positives = 42/55 (76%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ +EEE++ E EE E+E+E E E E++ E++E+EE +EEE+EEE E+ +++EV
Sbjct: 51 KSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEV 105
Score = 52.1 bits (125), Expect = 1e-07
Identities = 23/66 (34%), Positives = 42/66 (63%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
I++ + +EEE+E +E + +EEE++ E EE ++E+E E E E+ E++E+EE +E
Sbjct: 33 IKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEE 92
Query: 655 GGGKEE 660
+ E
Sbjct: 93 KEEEAE 98
Score = 51.8 bits (124), Expect = 2e-07
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E++ E EE E+E+E E E E+ E QE+EE +EEE+EEE E+ +++E +
Sbjct: 54 EEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFK 109
Score = 51.4 bits (123), Expect = 2e-07
Identities = 23/54 (42%), Positives = 38/54 (70%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + +EEE++ E EE E+E+E E E ++ E++E+EE +EEE+EEE E+ +
Sbjct: 48 EHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVK 101
Score = 50.6 bits (121), Expect = 3e-07
Identities = 25/69 (36%), Positives = 41/69 (59%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E+E +E + +EEE++ E EE E+E+ E E E+ E++E+EE +EEE+EE
Sbjct: 40 EEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAED 99
Query: 657 GKEEISLHF 665
K++ F
Sbjct: 100 VKQQEVFSF 108
Score = 50.2 bits (120), Expect = 4e-07
Identities = 21/56 (37%), Positives = 37/56 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E++ E EE E+E+E E E E+ E++ +EE +EEE+EEE E+ +++E + +
Sbjct: 56 EQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKRK 111
Score = 50.2 bits (120), Expect = 5e-07
Identities = 22/56 (39%), Positives = 36/56 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E ++ E EE E+E+E E E E+ E+ ++EE +EEE+EEE E+ +++E R
Sbjct: 55 EEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQEVFSFKR 110
Score = 49.4 bits (118), Expect = 9e-07
Identities = 25/69 (36%), Positives = 44/69 (63%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+Q ++ +E+EEE+E +E + +EEE++ E +E E+E+E E E E+ E++E+EE
Sbjct: 27 MQKTFIIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEE 86
Query: 652 EVRGGGKEE 660
+ KEE
Sbjct: 87 IAQEEEKEE 95
Score = 48.7 bits (116), Expect = 2e-06
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
I + E+EEE+E +E + +EEE++ E E E+E+E E E E+ E++E+EE +
Sbjct: 31 FIIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQE 90
Query: 654 RGGGKEE 660
+E
Sbjct: 91 EEKEEEA 97
Score = 46.7 bits (111), Expect = 8e-06
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 574 VWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
+ K +D+ E + ++ ++ E EE E+E+E E E E+ E++E +E +EE
Sbjct: 32 IIKKADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEE 91
Query: 634 EEEEEEEEEEEEEEEE 649
E+EEE E+ +++E
Sbjct: 92 EKEEEAEDVKQQEVFS 107
Score = 41.0 bits (96), Expect = 7e-04
Identities = 22/52 (42%), Positives = 33/52 (63%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+E+EEE+E +E + +EEE++ E EE E+E+E E E E+ KEEI
Sbjct: 36 ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEI 87
Score = 36.0 bits (83), Expect = 0.032
Identities = 17/48 (35%), Positives = 28/48 (58%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
+E+EEE+E + + +EEE++ E EE E+E+E E R E+
Sbjct: 36 ADEKEEEKENSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQE 83
Score = 30.6 bits (69), Expect = 1.9
Identities = 18/63 (28%), Positives = 30/63 (47%)
Query: 558 NVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEE 617
N K K I+ + + E G P E+I + + E +EEE+EEE E+ +++E
Sbjct: 45 NSDEHVKSKEEEQKIEYEEAEKEKEAGEPEREDIAEQQEKEEIAQEEEKEEEAEDVKQQE 104
Query: 618 EEE 620
Sbjct: 105 VFS 107
>gnl|CDD|219563 pfam07767, Nop53, Nop53 (60S ribosomal biogenesis). This nucleolar
family of proteins are involved in 60S ribosomal
biogenesis. They are specifically involved in the
processing beyond the 27S stage of 25S rRNA maturation.
This family contains sequences that bear similarity to
the glioma tumour suppressor candidate region gene 2
protein (p60). This protein has been found to interact
with herpes simplex type 1 regulatory proteins.
Length = 387
Score = 55.1 bits (133), Expect = 5e-08
Identities = 19/63 (30%), Positives = 34/63 (53%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E+E + E++ +E E EE++ E+ E +E E EE +++ EEE ++E G
Sbjct: 203 YEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEGF 262
Query: 658 KEE 660
+ E
Sbjct: 263 ESE 265
Score = 53.6 bits (129), Expect = 2e-07
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 5/67 (7%)
Query: 599 EREEEEEEEEEEEEEEEEEEE-----EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E+E + E++ +E E EE+ E + E E EE +++ EEE ++E E
Sbjct: 202 EYEKEVKAEKKRQELERVEEKKLEKMAPEASRLDEMSEGLLEESDDDGEEESDDESAWEG 261
Query: 654 RGGGKEE 660
E
Sbjct: 262 FESEYEP 268
Score = 44.3 bits (105), Expect = 2e-04
Identities = 13/62 (20%), Positives = 37/62 (59%), Gaps = 2/62 (3%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEE--EEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
R E+ +E E E +EE++ +++ + +E+ +E ++E+ ++E+ +E E++++
Sbjct: 283 RNKEKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKKL 342
Query: 654 RG 655
+
Sbjct: 343 KR 344
Score = 43.9 bits (104), Expect = 2e-04
Identities = 15/64 (23%), Positives = 32/64 (50%), Gaps = 9/64 (14%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEE---------EEEEEEEEEEEEEEEEEEEE 649
+ + EEE ++E E E E E + V+ + E+ +E E E +EE++ +++
Sbjct: 246 DDDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKK 305
Query: 650 EEEV 653
++
Sbjct: 306 LAQL 309
Score = 39.3 bits (92), Expect = 0.006
Identities = 13/68 (19%), Positives = 29/68 (42%), Gaps = 10/68 (14%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEV----------QEEEEEEEEEEEEEEEEEEEE 647
+ EEE ++E E E E E + ++ +E E E +EE++ +++
Sbjct: 247 DDGEEESDDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKL 306
Query: 648 EEEEEVRG 655
+ ++
Sbjct: 307 AQLARLKE 314
Score = 38.1 bits (89), Expect = 0.012
Identities = 12/56 (21%), Positives = 33/56 (58%), Gaps = 2/56 (3%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEE--EEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+R + E E +EE++ +++ + +E +EV ++E+ ++E+ +E E+++
Sbjct: 286 EKRRKELEREAKEEKQLKKKLAQLARLKEIAKEVAQKEKARARKKEQRKERGEKKK 341
Score = 35.1 bits (81), Expect = 0.13
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 24/89 (26%)
Query: 599 EREEEEEEEEEEEEE----------------------EEEEEEEEEEEEVQEEEEEE--E 634
+ E E E E E E E E +EE++ ++ + +
Sbjct: 254 DDESAWEGFESEYEPINKPVRPKRKTKAQRNKEKRRKELEREAKEEKQLKKKLAQLARLK 313
Query: 635 EEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
E +E ++E+ ++E R E+ L
Sbjct: 314 EIAKEVAQKEKARARKKEQRKERGEKKKL 342
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region. The domain
is found in the primary vegetative sigma factor. The
function of this domain is unclear and can be removed
without loss of function.
Length = 211
Score = 53.3 bits (129), Expect = 5e-08
Identities = 17/77 (22%), Positives = 37/77 (48%), Gaps = 10/77 (12%)
Query: 588 IENIIQLIRRGEREEE----------EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
I +++ R E E + E E +EE+++++++++E+E+
Sbjct: 5 IAYLLEQYDRVEAGEGRLSDLISGFIDPNAAAAAATAAAIESELDEEDLEDDDDDDEDED 64
Query: 638 EEEEEEEEEEEEEEEVR 654
E++EEE + + EE R
Sbjct: 65 EDDEEEADLGPDPEEAR 81
Score = 48.3 bits (116), Expect = 3e-06
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 11/78 (14%)
Query: 602 EEEEEEEEEE-----------EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E+ + E E + E +EE+ E++++++E+E+E++EE
Sbjct: 10 EQYDRVEAGEGRLSDLISGFIDPNAAAAAATAAAIESELDEEDLEDDDDDDEDEDEDDEE 69
Query: 651 EEVRGGGKEEISLHFYVL 668
E G EE F L
Sbjct: 70 EADLGPDPEEARERFAEL 87
Score = 34.1 bits (79), Expect = 0.14
Identities = 9/28 (32%), Positives = 22/28 (78%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
++++++E+E+E++EEE + + EE +E
Sbjct: 55 DDDDDDEDEDEDDEEEADLGPDPEEARE 82
>gnl|CDD|225880 COG3343, RpoE, DNA-directed RNA polymerase, delta subunit
[Transcription].
Length = 175
Score = 52.8 bits (127), Expect = 5e-08
Identities = 19/53 (35%), Positives = 44/53 (83%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++EEEE++E + ++E ++E+E+++E V+ E++E +E+E+++E+EE+EE++
Sbjct: 123 DKEEEEDDEVDSLDDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
Score = 51.7 bits (124), Expect = 1e-07
Identities = 23/87 (26%), Positives = 53/87 (60%)
Query: 566 KTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
+ I+ + +D+ E + E +EEEE++E + ++E ++E+E+++E
Sbjct: 89 EEIQAMTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDE 148
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E E++E +E+E+++E+EE+EE++
Sbjct: 149 IVEILIEDDEVDEDEDDDEDEEDEEDK 175
Score = 48.2 bits (115), Expect = 2e-06
Identities = 19/56 (33%), Positives = 42/56 (75%), Gaps = 1/56 (1%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE-EEEEEEEEEEEEEEEEEEEEV 653
E++EEEE++E + ++E ++E+E++ + E E++E +E+E+++E+EE+EE+
Sbjct: 120 YDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILIEDDEVDEDEDDDEDEEDEEDK 175
Score = 46.3 bits (110), Expect = 9e-06
Identities = 17/66 (25%), Positives = 44/66 (66%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
I+ IQ + + + +++E + EE +E+E + +E++ +EE++E + ++E ++E+E++
Sbjct: 87 IDEEIQAMTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDD 146
Query: 648 EEEEEV 653
+E E+
Sbjct: 147 DEIVEI 152
Score = 45.9 bits (109), Expect = 1e-05
Identities = 26/81 (32%), Positives = 50/81 (61%), Gaps = 4/81 (4%)
Query: 575 WKTSDQ-DEIGSPRIENIIQLIRRGEREEEEEEEEEEEE-EEEEEEEEEEEEEVQEEEEE 632
W D+ DE E + I+ ++E + EE +E+E + +E++EEEE++EV ++E
Sbjct: 81 WYPLDEIDEEIQAMTEK--KDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDE 138
Query: 633 EEEEEEEEEEEEEEEEEEEEV 653
++E+E+++E E E++EV
Sbjct: 139 NDDEDEDDDEIVEILIEDDEV 159
Score = 45.1 bits (107), Expect = 2e-05
Identities = 17/58 (29%), Positives = 41/58 (70%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E+++ + +++E + EE +E+E + +E +EEEE++E + ++E ++E+E+++E V
Sbjct: 96 EKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEIL 153
Score = 41.7 bits (98), Expect = 4e-04
Identities = 17/62 (27%), Positives = 42/62 (67%), Gaps = 2/62 (3%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE--EEEEEEEEEEEEVRGGGK 658
E+++ + +++E + EE +E+E + E++EEEE++E + +E ++E+E+++E+
Sbjct: 95 TEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDDEIVEILI 154
Query: 659 EE 660
E+
Sbjct: 155 ED 156
Score = 34.3 bits (79), Expect = 0.093
Identities = 14/62 (22%), Positives = 39/62 (62%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+EE + E+++ + +++E + E +E+E + +E++EEEE++E + ++E +++
Sbjct: 88 DEEIQAMTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDEDDD 147
Query: 662 SL 663
+
Sbjct: 148 EI 149
Score = 33.6 bits (77), Expect = 0.15
Identities = 17/61 (27%), Positives = 37/61 (60%), Gaps = 4/61 (6%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE----EEEEEEEEEEEEEEEEVRGGGKE 659
+E +EE + E+++ + +++EV EE +E+E E++EEEE++E + ++ E
Sbjct: 85 DEIDEEIQAMTEKKDIKAKDKEVDAFEEGDEDELDYDEDKEEEEDDEVDSLDDENDDEDE 144
Query: 660 E 660
+
Sbjct: 145 D 145
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 55.5 bits (134), Expect = 7e-08
Identities = 32/76 (42%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 587 RIENIIQLIR-RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+E I L+R R E E E EE EE EE +E+ E +EE++E E EE E+ E EE
Sbjct: 299 ELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEE 358
Query: 646 EEEEEEEVRGGGKEEI 661
+EE EE EE+
Sbjct: 359 AKEELEEKLSALLEEL 374
Score = 55.1 bits (133), Expect = 9e-08
Identities = 27/74 (36%), Positives = 37/74 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
I + + + E E EE EE EE +E+ E +EE EE + EE E+ E EE +EE
Sbjct: 303 EISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEE 362
Query: 647 EEEEEEVRGGGKEE 660
EE+ EE
Sbjct: 363 LEEKLSALLEELEE 376
Score = 52.0 bits (125), Expect = 9e-07
Identities = 26/74 (35%), Positives = 33/74 (44%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + +L + E +EE EE E EE E+ E EE +E EE+ EE EE E
Sbjct: 323 ERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALR 382
Query: 649 EEEEVRGGGKEEIS 662
EE EI
Sbjct: 383 EELAELEAELAEIR 396
Score = 50.1 bits (120), Expect = 4e-06
Identities = 25/75 (33%), Positives = 36/75 (48%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ ++ E +IE + + + E EE E+ E EE +EE EE+ + EE EE E
Sbjct: 320 ELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFE 379
Query: 636 EEEEEEEEEEEEEEE 650
EE E E E E
Sbjct: 380 ALREELAELEAELAE 394
Score = 48.6 bits (116), Expect = 1e-05
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+E + + I + E EE E EE E+ E EE +EE++E+ EE EE E E
Sbjct: 324 RLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALRE 383
Query: 647 EEEEEE 652
E E E
Sbjct: 384 ELAELE 389
Score = 48.2 bits (115), Expect = 1e-05
Identities = 33/75 (44%), Positives = 46/75 (61%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ E IE + + I E + +E EEE EE E+E EE +EE EE++ E+EE E+
Sbjct: 818 SLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELED 877
Query: 636 EEEEEEEEEEEEEEE 650
E +E EEE+EE EEE
Sbjct: 878 ELKELEEEKEELEEE 892
Score = 48.2 bits (115), Expect = 1e-05
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E + + + + + E +EE EE E EE E+ E++E +EE EE+ EE EE
Sbjct: 317 ELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEE 376
Query: 647 EEEEEE 652
E
Sbjct: 377 LFEALR 382
Score = 48.2 bits (115), Expect = 1e-05
Identities = 23/67 (34%), Positives = 30/67 (44%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
++ I+ ++ E E EE E+ E EE +EE EE EE EE E EE
Sbjct: 326 EELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREEL 385
Query: 646 EEEEEEE 652
E E E
Sbjct: 386 AELEAEL 392
Score = 47.8 bits (114), Expect = 2e-05
Identities = 33/64 (51%), Positives = 45/64 (70%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E++ Q R E+E EE EEE EE EE+ +E EEE EE+++E EE +EE EE E E+EE
Sbjct: 815 ELESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEE 874
Query: 647 EEEE 650
E+E
Sbjct: 875 LEDE 878
Score = 47.4 bits (113), Expect = 2e-05
Identities = 30/70 (42%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+E + + + E E EE +E EE EEE E EE +++EE EE EE+ + +EE EE
Sbjct: 738 RLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEE 797
Query: 647 -EEEEEEVRG 655
EEE EE
Sbjct: 798 LEEELEEAER 807
Score = 47.4 bits (113), Expect = 2e-05
Identities = 24/59 (40%), Positives = 29/59 (49%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
I E E E EE E E EE EE EE++E+ E +EE EE E EE E+
Sbjct: 296 EIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLA 354
Score = 47.0 bits (112), Expect = 3e-05
Identities = 25/66 (37%), Positives = 29/66 (43%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E I L E E EE E+ E EE +EE EE++ EE EE E EE E
Sbjct: 328 LKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAE 387
Query: 647 EEEEEE 652
E E
Sbjct: 388 LEAELA 393
Score = 46.6 bits (111), Expect = 4e-05
Identities = 29/77 (37%), Positives = 45/77 (58%), Gaps = 1/77 (1%)
Query: 587 RIENIIQLIRRGEREEEEEEEE-EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+E++++ +RR E E + EE + E EEE E+ + ++E EEE EE EEE EE +E
Sbjct: 699 SLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQE 758
Query: 646 EEEEEEEVRGGGKEEIS 662
EE EE +E ++
Sbjct: 759 RLEELEEELESLEEALA 775
Score = 46.6 bits (111), Expect = 5e-05
Identities = 29/66 (43%), Positives = 39/66 (59%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++E + + + E E E+ + EE EEE EE EEE EE+QE EE EEE E EE +
Sbjct: 717 QLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAK 776
Query: 647 EEEEEE 652
+EE E
Sbjct: 777 LKEEIE 782
Score = 46.2 bits (110), Expect = 5e-05
Identities = 36/74 (48%), Positives = 45/74 (60%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E I +L + + EEE EE E+E EE +EE EE E E +E E+E +E EEE+EE EEE
Sbjct: 835 EEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELR 894
Query: 649 EEEEVRGGGKEEIS 662
E E KEEI
Sbjct: 895 ELESELAELKEEIE 908
Score = 45.9 bits (109), Expect = 8e-05
Identities = 33/62 (53%), Positives = 44/62 (70%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ L +R ER E+E EE EEE EE EE+ +E EEE++E E+E EE +EE EE E E+EE
Sbjct: 816 LESLEQRRERLEQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEEL 875
Query: 651 EE 652
E+
Sbjct: 876 ED 877
Score = 45.1 bits (107), Expect = 1e-04
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+E + + + E + +EE EE EE+ + +EE EE++EE EE E + E E E
Sbjct: 759 RLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELES 818
Query: 647 EEEEEE 652
E+ E
Sbjct: 819 LEQRRE 824
Score = 45.1 bits (107), Expect = 1e-04
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
IE + + + E E EE E+E EE +EE EE E E+EE+++E +E EEE+EE EEE E
Sbjct: 836 EIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRE 895
Query: 647 EEEE 650
E E
Sbjct: 896 LESE 899
Score = 44.7 bits (106), Expect = 2e-04
Identities = 22/67 (32%), Positives = 28/67 (41%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ EE EE E EE E E E E++ E EE + E E EE E E E
Sbjct: 365 EKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLK 424
Query: 656 GGKEEIS 662
+E+
Sbjct: 425 EELKELE 431
Score = 44.7 bits (106), Expect = 2e-04
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 1/103 (0%)
Query: 562 TNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE 621
+L+ R +++ ++E+ + L R E E+ E E+E EE EEE EE
Sbjct: 781 IEELEEKRQALQEELEELEEELEEAERR-LDALERELESLEQRRERLEQEIEELEEEIEE 839
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
EE++ E EEE EE E+E EE +EE EE E + ++E+
Sbjct: 840 LEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKEL 882
Score = 44.3 bits (105), Expect = 2e-04
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+++ + + + E+E EE +EE EE E E+EE E+E +E++EE+EE EEE E E E E
Sbjct: 843 KLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAE 902
Query: 647 EEEEEE 652
+EE E
Sbjct: 903 LKEEIE 908
Score = 44.3 bits (105), Expect = 2e-04
Identities = 24/66 (36%), Positives = 31/66 (46%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E L+ E+ E EE +EE EE+ EE EE+ E EE E E E E
Sbjct: 338 ELEERETLLEELEQLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRN 397
Query: 647 EEEEEE 652
E EE +
Sbjct: 398 ELEELK 403
Score = 43.9 bits (104), Expect = 3e-04
Identities = 29/86 (33%), Positives = 39/86 (45%), Gaps = 11/86 (12%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEE-----------EEEEEEEEEEEEEVQEEEEEEEEE 636
E I+ ++ E EE EE +EE E E E EE++ E EE EE
Sbjct: 265 AEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEER 324
Query: 637 EEEEEEEEEEEEEEEEVRGGGKEEIS 662
EE +E+ E +EE E R EE+
Sbjct: 325 LEELKEKIEALKEELEERETLLEELE 350
Score = 43.5 bits (103), Expect = 4e-04
Identities = 22/59 (37%), Positives = 28/59 (47%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E E E EE E E EE EE + +E+ E +EE EE E EE E+ +
Sbjct: 295 EEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLL 353
Score = 43.5 bits (103), Expect = 4e-04
Identities = 31/70 (44%), Positives = 41/70 (58%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
QL R E EEE EE EEE EE +E EE EEE++ EE + +EE EE EE+ + +E
Sbjct: 734 QLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQE 793
Query: 653 VRGGGKEEIS 662
+EE+
Sbjct: 794 ELEELEEELE 803
Score = 43.2 bits (102), Expect = 4e-04
Identities = 33/80 (41%), Positives = 43/80 (53%), Gaps = 4/80 (5%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE----EEEEEE 642
+E + + + E+E EE + E EE EE EE +EE E++EE EE E E E EE
Sbjct: 254 ELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLRERLEE 313
Query: 643 EEEEEEEEEEVRGGGKEEIS 662
E E EE EE KE+I
Sbjct: 314 LENELEELEERLEELKEKIE 333
Score = 43.2 bits (102), Expect = 5e-04
Identities = 33/74 (44%), Positives = 43/74 (58%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ EI E + E EEE EE E+E EE +EE EE E E+ + E+E +E EEE+
Sbjct: 827 EQEIEELEEEIEELEEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEK 886
Query: 640 EEEEEEEEEEEEEV 653
EE EEE E E E+
Sbjct: 887 EELEEELRELESEL 900
Score = 43.2 bits (102), Expect = 5e-04
Identities = 31/75 (41%), Positives = 41/75 (54%), Gaps = 1/75 (1%)
Query: 588 IENIIQLIRR-GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ ++ + R E + E EEE E+ + EE EEE++E EEE EE +E EE EEE
Sbjct: 707 LRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEE 766
Query: 647 EEEEEEVRGGGKEEI 661
E EE KEEI
Sbjct: 767 LESLEEALAKLKEEI 781
Score = 43.2 bits (102), Expect = 5e-04
Identities = 21/66 (31%), Positives = 30/66 (45%), Gaps = 2/66 (3%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E +++ + + E EE +EE EE+ EE EE + EE E E E E E
Sbjct: 341 ERETLLEELE--QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNE 398
Query: 647 EEEEEE 652
EE +
Sbjct: 399 LEELKR 404
Score = 42.8 bits (101), Expect = 6e-04
Identities = 23/54 (42%), Positives = 27/54 (50%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E +EE EE+ EE EE E EE+ E E E E E EE + E E EE
Sbjct: 358 EAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEE 411
Score = 42.8 bits (101), Expect = 7e-04
Identities = 28/64 (43%), Positives = 35/64 (54%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + +L R E EEE E EE + +EE EE EE+ Q +EE EE EEE EE E +
Sbjct: 751 EELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLD 810
Query: 649 EEEE 652
E
Sbjct: 811 ALER 814
Score = 42.4 bits (100), Expect = 8e-04
Identities = 21/62 (33%), Positives = 28/62 (45%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ + +L E EE+ EE EE E EE E++ E E E EE + E E E
Sbjct: 351 QLLAELEEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLE 410
Query: 649 EE 650
E
Sbjct: 411 ER 412
Score = 42.4 bits (100), Expect = 8e-04
Identities = 21/55 (38%), Positives = 26/55 (47%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+EE EE+ EE EE E EE + E E E E EE + E E EE +
Sbjct: 359 AKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERL 413
Score = 42.4 bits (100), Expect = 0.001
Identities = 31/67 (46%), Positives = 41/67 (61%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E + +L E E+E EE +EE EE E E+EE E+E++E EEE+EE EEE E E E
Sbjct: 841 EEKLDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESEL 900
Query: 648 EEEEEVR 654
E +E
Sbjct: 901 AELKEEI 907
Score = 42.0 bits (99), Expect = 0.001
Identities = 30/60 (50%), Positives = 37/60 (61%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+E EE EEE EEE EE +EE++E E+E EE + E EE EE EE +E KEEI
Sbjct: 238 RKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEI 297
Score = 41.6 bits (98), Expect = 0.001
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEE-EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+E + + +R E E E E E EE + E E EE ++ E E+ +EE +E E
Sbjct: 373 ELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEA 432
Query: 646 EEEEEEEVRGGGKEEIS 662
E EE + EE+
Sbjct: 433 ELEELQTELEELNEELE 449
Score = 41.6 bits (98), Expect = 0.002
Identities = 26/68 (38%), Positives = 36/68 (52%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E + + +R E E E +EE E+ E EE E + E ++ E E EEE EEE E+ E
Sbjct: 885 EKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLE 944
Query: 647 EEEEEEVR 654
E E E+
Sbjct: 945 TELEREIE 952
Score = 41.2 bits (97), Expect = 0.002
Identities = 27/66 (40%), Positives = 38/66 (57%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E + + E E EE EEE EE +E EE EEE E ++E + +EE EE EE+ +
Sbjct: 731 ELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEELEEKRQA 790
Query: 647 EEEEEE 652
+EE E
Sbjct: 791 LQEELE 796
Score = 41.2 bits (97), Expect = 0.002
Identities = 30/62 (48%), Positives = 38/62 (61%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EEE EEE EE +EE EE E+E++E + E EE EE EE +EE E +E + EI
Sbjct: 245 EEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEI 304
Query: 662 SL 663
SL
Sbjct: 305 SL 306
Score = 41.2 bits (97), Expect = 0.002
Identities = 28/76 (36%), Positives = 42/76 (55%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + + + + + EE EEE EE EEE EE +E EE++EE E EE + +EE EE
Sbjct: 724 ELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEEIEE 783
Query: 647 EEEEEEVRGGGKEEIS 662
EE+ + EE+
Sbjct: 784 LEEKRQALQEELEELE 799
Score = 41.2 bits (97), Expect = 0.002
Identities = 22/56 (39%), Positives = 25/56 (44%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E +EE EE+ EE EE E E E E E E E EE + E E E R
Sbjct: 357 EEAKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEER 412
Score = 41.2 bits (97), Expect = 0.002
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 572 IKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
+ + + E+ + + I + +RE E EE E E E+ +EE +E++ E E
Sbjct: 378 FEALR-EELAELEA-ELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELE 435
Query: 632 EEEEEEEEEEEEEEEEEEEEE 652
E + E EE EE EE EE+ E
Sbjct: 436 ELQTELEELNEELEELEEQLE 456
Score = 41.2 bits (97), Expect = 0.002
Identities = 22/70 (31%), Positives = 30/70 (42%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+L E EE E EE E E E E E++E + E E EE E E E+ +E
Sbjct: 366 KLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKE 425
Query: 653 VRGGGKEEIS 662
+ E+
Sbjct: 426 ELKELEAELE 435
Score = 40.5 bits (95), Expect = 0.003
Identities = 26/74 (35%), Positives = 37/74 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++N ++ + E + EE E + EE + E EE E+ + EE EEE EE EE
Sbjct: 692 SLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELEELEE 751
Query: 647 EEEEEEVRGGGKEE 660
E EE + R EE
Sbjct: 752 ELEELQERLEELEE 765
Score = 40.1 bits (94), Expect = 0.004
Identities = 16/67 (23%), Positives = 30/67 (44%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + + + E E + + E E+ EE + EE++ + EE + E EEE E+
Sbjct: 675 ELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQ 734
Query: 647 EEEEEEV 653
+ E
Sbjct: 735 LQSRLEE 741
Score = 40.1 bits (94), Expect = 0.005
Identities = 26/53 (49%), Positives = 32/53 (60%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E +E EE EEE EEE EE +E EE E+E EE + E EE EE EE +
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQ 287
Score = 39.7 bits (93), Expect = 0.005
Identities = 27/73 (36%), Positives = 38/73 (52%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + +L E EE+ + +EE EE EEE EE E + E E E E+ E E+E E
Sbjct: 772 EALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIE 831
Query: 649 EEEEVRGGGKEEI 661
E EE +E++
Sbjct: 832 ELEEEIEELEEKL 844
Score = 39.7 bits (93), Expect = 0.005
Identities = 24/66 (36%), Positives = 34/66 (51%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E + + + + E EE E E E EE E E EE++E EE +E+ E +EE EE
Sbjct: 282 ELEELQEELLELKEEIEELEGEISLLRERLEELENELEELEERLEELKEKIEALKEELEE 341
Query: 647 EEEEEE 652
E E
Sbjct: 342 RETLLE 347
Score = 39.7 bits (93), Expect = 0.006
Identities = 25/74 (33%), Positives = 35/74 (47%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + L E+ EE + EE E + EE + E+ EEE E+ + EE EEE E
Sbjct: 688 EELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRLEELEEELE 747
Query: 649 EEEEVRGGGKEEIS 662
E EE +E +
Sbjct: 748 ELEEELEELQERLE 761
Score = 39.7 bits (93), Expect = 0.006
Identities = 23/78 (29%), Positives = 38/78 (48%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
GS + + R + EEE E E + E+ EEE + + E++ E+ EE + EE
Sbjct: 655 GSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEEL 714
Query: 644 EEEEEEEEEVRGGGKEEI 661
E + EE + +EE+
Sbjct: 715 ERQLEELKRELAALEEEL 732
Score = 39.3 bits (92), Expect = 0.007
Identities = 31/72 (43%), Positives = 34/72 (47%), Gaps = 6/72 (8%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE-- 646
E I +L R E E + E E E E EEE EEE E+ E E E E E EEE E
Sbjct: 905 EEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPV 964
Query: 647 ----EEEEEEVR 654
EE EEV
Sbjct: 965 NLRAIEEYEEVE 976
Score = 39.3 bits (92), Expect = 0.007
Identities = 24/70 (34%), Positives = 35/70 (50%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ E + E E EE E E E+ +EE++E E E EE + E EE EE EE EE
Sbjct: 394 EIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELEELNEELEELEE 453
Query: 653 VRGGGKEEIS 662
++ +
Sbjct: 454 QLEELRDRLK 463
Score = 39.3 bits (92), Expect = 0.008
Identities = 24/70 (34%), Positives = 28/70 (40%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+ EE EE E EE E E E+ E E EE + E E EE E E
Sbjct: 359 AKEELEEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSE 418
Query: 653 VRGGGKEEIS 662
KEE+
Sbjct: 419 RLEDLKEELK 428
Score = 38.9 bits (91), Expect = 0.009
Identities = 21/75 (28%), Positives = 37/75 (49%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
++ ++E + + ++ + E E+ EE + EE E + EE++ E EEE
Sbjct: 673 EEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEEL 732
Query: 638 EEEEEEEEEEEEEEE 652
E+ + EE EEE E
Sbjct: 733 EQLQSRLEELEEELE 747
Score = 38.9 bits (91), Expect = 0.010
Identities = 26/75 (34%), Positives = 38/75 (50%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
Q E ++++ +R E EE + EE E + EE + E ++EE E+ +
Sbjct: 680 EAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQLQSRL 739
Query: 638 EEEEEEEEEEEEEEE 652
EE EEE EE EEE E
Sbjct: 740 EELEEELEELEEELE 754
Score = 38.9 bits (91), Expect = 0.010
Identities = 20/72 (27%), Positives = 36/72 (50%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ +L + E+ EEE + + E E+ EE +++E E + EE + E EEE E+
Sbjct: 676 LAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLEELKRELAALEEELEQL 735
Query: 651 EEVRGGGKEEIS 662
+ +EE+
Sbjct: 736 QSRLEELEEELE 747
Score = 38.9 bits (91), Expect = 0.011
Identities = 27/66 (40%), Positives = 40/66 (60%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E + + + E E+EE E+E +E EEE+EE EEE E++ E E +EE E+ E EE
Sbjct: 857 ELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEE 916
Query: 647 EEEEEE 652
E + E
Sbjct: 917 LEAKLE 922
Score = 38.9 bits (91), Expect = 0.011
Identities = 29/64 (45%), Positives = 38/64 (59%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
R EEE EE +EE EE E+E EE + E++E EE EE +EE E +EE EE E +
Sbjct: 249 SRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLELKEEIEELEGEISLLR 308
Query: 659 EEIS 662
E +
Sbjct: 309 ERLE 312
Score = 38.5 bits (90), Expect = 0.012
Identities = 24/68 (35%), Positives = 34/68 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + + + E E+ E EE E + E E E E++EE EEE E+ E E E E
Sbjct: 892 ELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREI 951
Query: 647 EEEEEEVR 654
E EEE+
Sbjct: 952 ERLEEEIE 959
Score = 38.5 bits (90), Expect = 0.013
Identities = 30/77 (38%), Positives = 39/77 (50%), Gaps = 10/77 (12%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE--EEEVQEEEEEEEEEEEE------ 639
IE + + + E + E E E E EEE EEE E+ E E++ E E EEE E
Sbjct: 907 IEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNL 966
Query: 640 --EEEEEEEEEEEEEVR 654
EE EE EE EE++
Sbjct: 967 RAIEEYEEVEERYEELK 983
Score = 38.5 bits (90), Expect = 0.014
Identities = 28/53 (52%), Positives = 32/53 (60%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
R E EE EEE EEE EE +EE EE E + EE + E EE EE EE +EE
Sbjct: 237 LRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289
Score = 38.5 bits (90), Expect = 0.015
Identities = 25/63 (39%), Positives = 32/63 (50%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ +L E+ E EE E + E E E E EEE++EE E+ E E E E E EEE
Sbjct: 898 SELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEE 957
Query: 649 EEE 651
E
Sbjct: 958 IEA 960
Score = 38.5 bits (90), Expect = 0.015
Identities = 25/52 (48%), Positives = 28/52 (53%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE+EE EEE E E E E +EE E E EE E + E E E E EEE
Sbjct: 883 EEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEE 934
Score = 38.2 bits (89), Expect = 0.015
Identities = 28/70 (40%), Positives = 37/70 (52%), Gaps = 4/70 (5%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEE----EEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E + ++ E E+EE EEE E E E +EE E+ E ++E E + E E E E
Sbjct: 871 EKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPE 930
Query: 643 EEEEEEEEEE 652
EEE EEE E
Sbjct: 931 LEEELEEEYE 940
Score = 38.2 bits (89), Expect = 0.017
Identities = 28/78 (35%), Positives = 38/78 (48%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
++EI + E EEE EE E + E E E E+ + E+E EE
Sbjct: 774 LAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEEL 833
Query: 636 EEEEEEEEEEEEEEEEEV 653
EEE EE EE+ +E EEE+
Sbjct: 834 EEEIEELEEKLDELEEEL 851
Score = 38.2 bits (89), Expect = 0.018
Identities = 26/64 (40%), Positives = 39/64 (60%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E + + + + E EE E E+EE E+E +E EEE+EE++EE E E E E +EE E+
Sbjct: 850 ELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEK 909
Query: 647 EEEE 650
E
Sbjct: 910 LRER 913
Score = 38.2 bits (89), Expect = 0.019
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E E+E +E EEE+EE EEE E E E + +EE E+ E EE E + E E E+
Sbjct: 871 EKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELP 929
Score = 37.8 bits (88), Expect = 0.020
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE-EEEEEEEEEEEEEEE 647
+L + EEE+EE EEE E E E E +EE+++ E EE E + E E E
Sbjct: 870 AEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELP 929
Query: 648 EEEEEVRGGGKEEIS 662
E EEE+ ++ +
Sbjct: 930 ELEEELEEEYEDTLE 944
Score = 37.8 bits (88), Expect = 0.021
Identities = 23/73 (31%), Positives = 30/73 (41%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
L+ E E EE E E E E E EE++ E E EE E E E+ +EE +
Sbjct: 369 ALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELK 428
Query: 653 VRGGGKEEISLHF 665
EE+
Sbjct: 429 ELEAELEELQTEL 441
Score = 37.8 bits (88), Expect = 0.024
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++ +E EE EEE EEE EE +EE EE ++E EE + E EE EE EE +EE
Sbjct: 234 LKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEE 289
Score = 37.8 bits (88), Expect = 0.024
Identities = 28/77 (36%), Positives = 39/77 (50%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
S ++ + + E +R +EE EE EEE EE E + E E E+ E E+
Sbjct: 769 SLEEALAKLKEEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQ 828
Query: 638 EEEEEEEEEEEEEEEVR 654
E EE EEE EE EE++
Sbjct: 829 EIEELEEEIEELEEKLD 845
Score = 37.4 bits (87), Expect = 0.026
Identities = 29/77 (37%), Positives = 38/77 (49%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+ +E+ R +L E EE E + E E E E+ E QE EE EEE E
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838
Query: 638 EEEEEEEEEEEEEEEVR 654
E EE+ +E EEE EE+
Sbjct: 839 ELEEKLDELEEELEELE 855
Score = 37.4 bits (87), Expect = 0.028
Identities = 28/87 (32%), Positives = 43/87 (49%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
++ E + + + + + E E EE E + E E E E+ E +++E EE EEE E
Sbjct: 779 EEIEELEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIE 838
Query: 639 EEEEEEEEEEEEEEVRGGGKEEISLHF 665
E EE+ +E EEE E EE+
Sbjct: 839 ELEEKLDELEEELEELEKELEELKEEL 865
Score = 37.4 bits (87), Expect = 0.031
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+++ + + + E E EEE EE +EE EE E+E EE++ E EE EE EE +EE E
Sbjct: 233 KLKELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEELQEELLE 292
Query: 647 EEEEEE 652
+EE E
Sbjct: 293 LKEEIE 298
Score = 37.0 bits (86), Expect = 0.037
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ + + E +EE EE E E+EE E+E +E EE +EE EEE E E E E +EE E+
Sbjct: 851 LEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKL 910
Query: 652 EVR 654
R
Sbjct: 911 RER 913
Score = 36.6 bits (85), Expect = 0.056
Identities = 20/63 (31%), Positives = 25/63 (39%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + + E E EE E E E E E E + E E EE E E E+
Sbjct: 364 EEKLSALLEELEELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDL 423
Query: 649 EEE 651
+EE
Sbjct: 424 KEE 426
Score = 36.2 bits (84), Expect = 0.061
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + +L E EE + E E EE E E +++ +EE +E E E EE + E E
Sbjct: 383 EELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEELQTELE 442
Query: 649 EEEEVRGGGKEEIS 662
E E +E++
Sbjct: 443 ELNEELEELEEQLE 456
Score = 35.8 bits (83), Expect = 0.077
Identities = 29/82 (35%), Positives = 36/82 (43%), Gaps = 14/82 (17%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEE------------EEEEEEEEEVQE--EEEE 632
R+E + + R E E E EEE EEE E+ EEE E V EE
Sbjct: 913 RLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEY 972
Query: 633 EEEEEEEEEEEEEEEEEEEEVR 654
EE EE EE + + E+ EE
Sbjct: 973 EEVEERYEELKSQREDLEEAKE 994
Score = 35.8 bits (83), Expect = 0.100
Identities = 23/65 (35%), Positives = 33/65 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++ + + E E E E E E +EE E+ E EE++ + E E E E EEE EE
Sbjct: 878 ELKELEEEKEELEEELRELESELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEE 937
Query: 647 EEEEE 651
E E+
Sbjct: 938 EYEDT 942
Score = 35.5 bits (82), Expect = 0.12
Identities = 27/68 (39%), Positives = 39/68 (57%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E ++ ++ E E E+EE E+E +E EEE+EE EE E E E E +EE E+ E
Sbjct: 853 ELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAELKEEIEKLRE 912
Query: 647 EEEEEEVR 654
EE E +
Sbjct: 913 RLEELEAK 920
Score = 35.5 bits (82), Expect = 0.12
Identities = 23/61 (37%), Positives = 29/61 (47%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ ++ + E EE E + E E E E EE EEE E+ E E E E E EEE E
Sbjct: 900 LAELKEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIE 959
Query: 652 E 652
Sbjct: 960 A 960
Score = 35.5 bits (82), Expect = 0.13
Identities = 21/75 (28%), Positives = 33/75 (44%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+E + + E EE EE+ EE + +E E E E+QEE + E+E E
Sbjct: 431 EAELEELQTELEELNEELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARL 490
Query: 645 EEEEEEEEVRGGGKE 659
+ E E+ G +
Sbjct: 491 DRLEAEQRASQGVRA 505
Score = 35.1 bits (81), Expect = 0.16
Identities = 24/67 (35%), Positives = 31/67 (46%), Gaps = 1/67 (1%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + + I + EE E + E E E E EEE EE + E+ E E E E E EEE
Sbjct: 899 ELAELKEEIEKLRERLEELEAKLERLEVELPELEEELEE-EYEDTLETELEREIERLEEE 957
Query: 647 EEEEEEV 653
E V
Sbjct: 958 IEALGPV 964
Score = 35.1 bits (81), Expect = 0.16
Identities = 25/77 (32%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE---EEEEEEEEEEE 643
E + + + E E E E EE + E E EE E + E E+ E +E E E EE
Sbjct: 377 LFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELEE 436
Query: 644 EEEEEEEEEVRGGGKEE 660
+ E EE EE
Sbjct: 437 LQTELEELNEELEELEE 453
Score = 34.3 bits (79), Expect = 0.24
Identities = 24/49 (48%), Positives = 32/49 (65%), Gaps = 1/49 (2%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE-EEEEEEEEEEEEEV 653
+E +E EE EEE EEE++E +EE EE E+E EE + E EE EE+
Sbjct: 235 KELRKELEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREEL 283
Score = 34.3 bits (79), Expect = 0.25
Identities = 33/121 (27%), Positives = 52/121 (42%), Gaps = 11/121 (9%)
Query: 572 IKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEE---------EEEEEEEEE 622
K+ + + +E + E E E E EEE E EE EE EE
Sbjct: 919 AKLERLEVELPELEEELEEEYEDTLETELEREIERLEEEIEALGPVNLRAIEEYEEVEER 978
Query: 623 EEEVQEEEEEEEEEEEE-EEEEEEEEEEEEEVRGGGKEEISLHF-YVLYVLSKGKIAGLF 680
EE++ + E+ EE +E+ E EE ++E+ E ++I+ +F + L G A L
Sbjct: 979 YEELKSQREDLEEAKEKLLEVIEELDKEKRERFKETFDKINENFSEIFKELFGGGTAELE 1038
Query: 681 Y 681
Sbjct: 1039 L 1039
Score = 33.5 bits (77), Expect = 0.40
Identities = 21/67 (31%), Positives = 33/67 (49%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
R ++ E +E EEE E E + E+ EEE++ + E E+ EE + EE E
Sbjct: 660 RSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQLEELERQLE 719
Query: 656 GGKEEIS 662
K E++
Sbjct: 720 ELKRELA 726
Score = 33.5 bits (77), Expect = 0.49
Identities = 27/91 (29%), Positives = 43/91 (47%), Gaps = 15/91 (16%)
Query: 587 RIENIIQLIR------RGEREEEEEEEEEEEEEEEEEEE---------EEEEEEVQEEEE 631
R+E++++ + + E+ E +E + E E E +E EE++EE
Sbjct: 190 RLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELEELEEELS 249
Query: 632 EEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
EEE EE +EE EE E+E E EE+
Sbjct: 250 RLEEELEELQEELEEAEKEIEELKSELEELR 280
Score = 30.5 bits (69), Expect = 3.9
Identities = 16/71 (22%), Positives = 29/71 (40%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + +L + E + +E E E E +EE + E+E+ E + E E+ +
Sbjct: 446 EELEELEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDRLEAEQRASQGVRA 505
Query: 649 EEEEVRGGGKE 659
E + G
Sbjct: 506 VLEALESGLPG 516
Score = 30.5 bits (69), Expect = 4.3
Identities = 17/68 (25%), Positives = 31/68 (45%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
I G R + ++ E +E EEE E E ++++ EEE + + E E+ EE
Sbjct: 652 ITGGSRNKRSSLAQKRELKELEEELAELEAQLEKLEEELKSLKNELRSLEDLLEELRRQL 711
Query: 655 GGGKEEIS 662
+ ++
Sbjct: 712 EELERQLE 719
Score = 29.7 bits (67), Expect = 5.9
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ +EE E + E EE E E+ EE++++ E+ E + E+ E +E + E E+
Sbjct: 171 KERKEEAERKLERTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELEL 227
>gnl|CDD|173412 PTZ00121, PTZ00121, MAEBL; Provisional.
Length = 2084
Score = 55.9 bits (134), Expect = 7e-08
Identities = 20/63 (31%), Positives = 41/63 (65%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++ EEE + + EE ++ EE++++ EE ++ EE+E++ E ++E EE ++ EE++
Sbjct: 1653 KKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEA 1712
Query: 659 EEI 661
EE
Sbjct: 1713 EEK 1715
Score = 52.8 bits (126), Expect = 7e-07
Identities = 20/61 (32%), Positives = 44/61 (72%), Gaps = 3/61 (4%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
++ EE++++ EE ++ EE+E++ E +++E EE ++ EE +++E EE+++ EE++ K
Sbjct: 1668 KKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELK---KA 1724
Query: 660 E 660
E
Sbjct: 1725 E 1725
Score = 52.1 bits (124), Expect = 1e-06
Identities = 18/55 (32%), Positives = 37/55 (67%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ EE ++ EE++++ EE ++ EE+E + E ++E EE ++ EE +++E EE +
Sbjct: 1662 KAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKK 1716
Score = 51.7 bits (123), Expect = 1e-06
Identities = 24/78 (30%), Positives = 44/78 (56%), Gaps = 5/78 (6%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE-----EEEEEE 643
EN I+ ++ EE++++ EE ++ EE+E++ E +E EE ++ EE EE+++
Sbjct: 1658 ENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKK 1717
Query: 644 EEEEEEEEEVRGGGKEEI 661
EE ++ EE EE
Sbjct: 1718 AEELKKAEEENKIKAEEA 1735
Score = 49.8 bits (118), Expect = 5e-06
Identities = 21/65 (32%), Positives = 47/65 (72%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++ E +++E EE+++ EE ++ EEE + + +E ++E EE++++ EE +++EEE++++
Sbjct: 1702 KKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAH 1761
Query: 656 GGKEE 660
KEE
Sbjct: 1762 LKKEE 1766
Score = 49.0 bits (116), Expect = 9e-06
Identities = 18/56 (32%), Positives = 41/56 (73%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + E+ +++E EE+++ EE ++ EEE +++ EE ++ EE++++ EE ++ EE+E
Sbjct: 1632 KKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDE 1687
Score = 49.0 bits (116), Expect = 9e-06
Identities = 21/68 (30%), Positives = 44/68 (64%), Gaps = 5/68 (7%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEE-----EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++ +++ E EE+++ EE ++ EEE EE ++ EE+ ++ EE ++ EE+E++ E
Sbjct: 1635 VEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEKKAAEAL 1694
Query: 647 EEEEEEVR 654
++E EE +
Sbjct: 1695 KKEAEEAK 1702
Score = 48.6 bits (115), Expect = 1e-05
Identities = 20/72 (27%), Positives = 44/72 (61%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + + + +++E EE+++ EE ++ EEE + + E ++ EE++++ EE ++ EE+E+
Sbjct: 1629 EEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEEDEK 1688
Query: 649 EEEEVRGGGKEE 660
+ E EE
Sbjct: 1689 KAAEALKKEAEE 1700
Score = 48.2 bits (114), Expect = 1e-05
Identities = 19/62 (30%), Positives = 45/62 (72%), Gaps = 1/62 (1%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE-EEEEEEEEEEEEEEEEEEVRGGGK 658
++ EEE+++ E+ +++E EE+++ EE+++ EEE + + EE ++ EE++++ EE + +
Sbjct: 1626 KKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEEDKKKAEEAKKAEE 1685
Query: 659 EE 660
+E
Sbjct: 1686 DE 1687
Score = 47.8 bits (113), Expect = 2e-05
Identities = 20/56 (35%), Positives = 40/56 (71%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++E EE ++ EE +++E EE+++ EE + EEE + + EE ++E EE++++ EE +
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAK 1750
Score = 47.4 bits (112), Expect = 3e-05
Identities = 20/62 (32%), Positives = 41/62 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++ EE+E++ E ++E EE ++ EE ++E EE+++ EE ++ EEE + + EE + +
Sbjct: 1681 KKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAE 1740
Query: 659 EE 660
E+
Sbjct: 1741 ED 1742
Score = 47.4 bits (112), Expect = 3e-05
Identities = 24/79 (30%), Positives = 49/79 (62%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+ RIE +++L ++ + EE ++ EE + + EE ++ EEE ++ E+ +++E EE++
Sbjct: 1588 KAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKK 1647
Query: 642 EEEEEEEEEEEVRGGGKEE 660
+ EE ++ EEE + EE
Sbjct: 1648 KAEELKKAEEENKIKAAEE 1666
Score = 47.1 bits (111), Expect = 3e-05
Identities = 22/66 (33%), Positives = 46/66 (69%), Gaps = 3/66 (4%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE---EEEEEEEEEEEEEEEEEEVRGG 656
++E EE ++ EE +++E EE+++ EE+++ EEE + EE ++E EE++++ EE +
Sbjct: 1695 KKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEE 1754
Query: 657 GKEEIS 662
K++I+
Sbjct: 1755 EKKKIA 1760
Score = 46.7 bits (110), Expect = 4e-05
Identities = 22/74 (29%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEE----------EEEEVQEEEEEEEEEEEEEEEEEE 645
++ E ++ EE+E++ E ++E EE E EE ++ EE ++ EEE + + EE
Sbjct: 1675 KKAEEAKKAEEDEKKAAEALKKEAEEAKKAEELKKKEAEEKKKAEELKKAEEENKIKAEE 1734
Query: 646 EEEEEEEVRGGGKE 659
++E EE + +E
Sbjct: 1735 AKKEAEEDKKKAEE 1748
Score = 44.4 bits (104), Expect = 2e-04
Identities = 19/60 (31%), Positives = 43/60 (71%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ E ++ EEE + + EE ++E EE++++ +E +++EEE+++ ++EEE++ EE+R
Sbjct: 1715 KKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIR 1774
Score = 44.0 bits (103), Expect = 3e-04
Identities = 21/76 (27%), Positives = 45/76 (59%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
K +++D+ + R + EE + EEE++ + EE ++ EE +++ EE ++ E
Sbjct: 1570 KKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAE 1629
Query: 636 EEEEEEEEEEEEEEEE 651
EE+++ E+ +++E EE
Sbjct: 1630 EEKKKVEQLKKKEAEE 1645
Score = 44.0 bits (103), Expect = 3e-04
Identities = 18/61 (29%), Positives = 39/61 (63%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
++ EE + + EE ++ EEE+++ E+ ++E EE+++ EE ++ EEE + + E +E
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAKKAEE 1672
Query: 660 E 660
+
Sbjct: 1673 D 1673
Score = 43.6 bits (102), Expect = 4e-04
Identities = 20/62 (32%), Positives = 40/62 (64%), Gaps = 3/62 (4%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++ EE + + EE ++ EEE+++ E+ + +E EE+++ EE ++ EEE + + EE + K
Sbjct: 1613 KKAEEAKIKAEELKKAEEEKKKVEQLKKKEAEEKKKAEELKKAEEENKIKAAEEAK---K 1669
Query: 659 EE 660
E
Sbjct: 1670 AE 1671
Score = 42.1 bits (98), Expect = 0.001
Identities = 20/76 (26%), Positives = 45/76 (59%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++E EE+++ EE ++ EEE + + EE +E EE++++ EE +++EEE+++ + K
Sbjct: 1709 KKEAEEKKKAEELKKAEEENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEK 1768
Query: 659 EEISLHFYVLYVLSKG 674
+ + V+ +
Sbjct: 1769 KAEEIRKEKEAVIEEE 1784
Score = 40.1 bits (93), Expect = 0.004
Identities = 20/67 (29%), Positives = 40/67 (59%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+R+ E ++ EE EE + EEE++ + E ++ EE + + EE ++ EEE+++ E+++
Sbjct: 1580 LRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAEEAKIKAEELKKAEEEKKKVEQLK 1639
Query: 655 GGGKEEI 661
EE
Sbjct: 1640 KKEAEEK 1646
Score = 40.1 bits (93), Expect = 0.005
Identities = 23/72 (31%), Positives = 47/72 (65%), Gaps = 6/72 (8%)
Query: 595 IRRGEREEEEEEEEEEEEEEEE-EEEEEEEEEVQEEEEEEEEEEEEEEEE-----EEEEE 648
+ + EE ++E EE++++ EE +++EEE++++ ++EEE++ EE +E EEE +
Sbjct: 1727 ENKIKAEEAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELD 1786
Query: 649 EEEEVRGGGKEE 660
EE+E R ++
Sbjct: 1787 EEDEKRRMEVDK 1798
Score = 39.0 bits (90), Expect = 0.009
Identities = 21/73 (28%), Positives = 39/73 (53%), Gaps = 2/73 (2%)
Query: 595 IRRGE--REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+R+ E R+ E + EEE + EE + E+ ++ + ++ EE +++ EE ++ EEE E
Sbjct: 1193 LRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNE 1252
Query: 653 VRGGGKEEISLHF 665
+E HF
Sbjct: 1253 EIRKFEEARMAHF 1265
Score = 38.2 bits (88), Expect = 0.019
Identities = 12/54 (22%), Positives = 36/54 (66%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE +++ +E ++ E +++ +E ++ +E ++ +E ++ EE ++ +E ++ EE +
Sbjct: 1493 EEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKK 1546
Score = 37.8 bits (87), Expect = 0.022
Identities = 12/56 (21%), Positives = 38/56 (67%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ +E ++ E +++ +E ++ EE ++ E ++ EE ++ +E ++ EE+++ +E++
Sbjct: 1497 KKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELK 1552
Score = 37.8 bits (87), Expect = 0.025
Identities = 13/73 (17%), Positives = 37/73 (50%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E E E + E E+++EE +++ + +++ EE ++ +E +++ EE+
Sbjct: 1344 AAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEED 1403
Query: 640 EEEEEEEEEEEEE 652
+++ +E ++
Sbjct: 1404 KKKADELKKAAAA 1416
Score = 37.8 bits (87), Expect = 0.025
Identities = 12/56 (21%), Positives = 39/56 (69%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ E +++ +E ++ EE ++ +E ++ +E ++ +E ++ EE+++ +E ++ EE++
Sbjct: 1503 KKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELK 1558
Score = 37.4 bits (86), Expect = 0.028
Identities = 14/65 (21%), Positives = 40/65 (61%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E E EE+ E E+++EE +++ + +++ EE+++ +E +++ EE++++ +E++
Sbjct: 1353 EAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKK 1412
Query: 656 GGKEE 660
+
Sbjct: 1413 AAAAK 1417
Score = 37.4 bits (86), Expect = 0.030
Identities = 12/56 (21%), Positives = 38/56 (67%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E +++ EE ++ +E +++ EE ++ +E +++ EE +++ +E ++ E +++ +E +
Sbjct: 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAK 1516
Score = 37.4 bits (86), Expect = 0.034
Identities = 17/66 (25%), Positives = 42/66 (63%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ E ++ EE ++ +E ++ EE+++ +E+++ EE ++ EE+++ EE ++ EE++ +
Sbjct: 1521 AKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMAL 1580
Query: 656 GGKEEI 661
EE
Sbjct: 1581 RKAEEA 1586
Score = 37.4 bits (86), Expect = 0.034
Identities = 10/64 (15%), Positives = 40/64 (62%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+++EE +++ + +++ EE+++ +E +++ EE++++ +E ++ +++ +E +
Sbjct: 1366 AEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKK 1425
Query: 656 GGKE 659
+E
Sbjct: 1426 KAEE 1429
Score = 37.0 bits (85), Expect = 0.037
Identities = 14/62 (22%), Positives = 41/62 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E +++ EE ++ EE +++ EE ++ +E +++ EE ++ +E +++ EE +++ +E + +
Sbjct: 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE 1507
Query: 659 EE 660
+
Sbjct: 1508 AK 1509
Score = 37.0 bits (85), Expect = 0.037
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ R+ E E + EE + E+ ++ E ++ EE ++ EE ++ EEE EE + EE
Sbjct: 1202 AEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEE 1259
Score = 37.0 bits (85), Expect = 0.045
Identities = 20/68 (29%), Positives = 46/68 (67%), Gaps = 6/68 (8%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEE------EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + E ++++ EE +++EEE+ ++EEE++ EE+++E+E EEE +EE+E+
Sbjct: 1734 EAKKEAEEDKKKAEEAKKDEEEKKKIAHLKKEEEKKAEEIRKEKEAVIEEELDEEDEKRR 1793
Query: 647 EEEEEEVR 654
E +++++
Sbjct: 1794 MEVDKKIK 1801
Score = 36.7 bits (84), Expect = 0.054
Identities = 9/56 (16%), Positives = 37/56 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+++ + +++ EE+++ +E +++ EE +++ +E ++ +++ +E +++ EE +
Sbjct: 1376 AKKKADAAKKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKK 1431
Score = 36.7 bits (84), Expect = 0.057
Identities = 16/60 (26%), Positives = 39/60 (65%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E ++ EE ++ +E ++ EE ++ +E ++ EE+++ +E ++ EE ++ EE+++ K E
Sbjct: 1514 EAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAE 1573
Score = 36.3 bits (83), Expect = 0.064
Identities = 11/60 (18%), Positives = 38/60 (63%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ + ++ EE+++ +E +++ EE ++ +E +++ EE +++ + +++ EE ++ E
Sbjct: 1289 KKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAA 1348
Score = 36.3 bits (83), Expect = 0.065
Identities = 10/52 (19%), Positives = 39/52 (75%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+++ EE+++ +E +++ EE++++ +E+++ +++ +E +++ EE+++ +E
Sbjct: 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Score = 36.3 bits (83), Expect = 0.068
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 3/63 (4%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE---EE 651
+R+ E + E+ + E + EEE + EE + E+ ++ E ++ EE +++ EE E
Sbjct: 1187 VRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAE 1246
Query: 652 EVR 654
E R
Sbjct: 1247 EER 1249
Score = 36.3 bits (83), Expect = 0.069
Identities = 14/63 (22%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE---EE 651
++ +++ +E ++ EE ++ +E ++ EE ++ +E ++ EE+++ +E ++ EE E
Sbjct: 1502 AKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAE 1561
Query: 652 EVR 654
E +
Sbjct: 1562 EKK 1564
Score = 36.3 bits (83), Expect = 0.076
Identities = 18/71 (25%), Positives = 42/71 (59%), Gaps = 4/71 (5%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE----EEEEEEEEEEEEEEEEEEEE 650
++ E ++ +E ++ EE ++ +E ++ EE+ + +E EE ++ EE+++ EE ++ EE
Sbjct: 1515 AKKAEEAKKADEAKKAEEAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEE 1574
Query: 651 EEVRGGGKEEI 661
++ K E
Sbjct: 1575 DKNMALRKAEE 1585
Score = 35.9 bits (82), Expect = 0.086
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 592 IQLIRRGE--REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ R+ E ++ E + EE + EE + E+ + + + EEE + EE + E+ ++
Sbjct: 1166 AEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKK 1225
Query: 650 EEEVR 654
E V+
Sbjct: 1226 AEAVK 1230
Score = 35.9 bits (82), Expect = 0.087
Identities = 12/59 (20%), Positives = 36/59 (61%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E +++ EE +++ +E ++ E +++ E ++ EE ++ +E ++ EE ++ +E +
Sbjct: 1482 AKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAK 1540
Score = 35.9 bits (82), Expect = 0.097
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 13/76 (17%)
Query: 595 IRRGE--REEEEEEEEEEE--------EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+++ E ++ EE ++ EE+ EE ++ EE EE ++ EEE++ + EE ++ E
Sbjct: 1557 LKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEEAKKAE 1616
Query: 645 EEEEEEEEVRGGGKEE 660
E + + EE++ K E
Sbjct: 1617 EAKIKAEELK---KAE 1629
Score = 35.9 bits (82), Expect = 0.099
Identities = 12/60 (20%), Positives = 42/60 (70%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+++ E +++ +E ++ EE+++ +E +++ EE ++ +E +++ EE +++ + +++ EE +
Sbjct: 1283 LKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAK 1342
Score = 35.5 bits (81), Expect = 0.11
Identities = 12/53 (22%), Positives = 36/53 (67%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E ++ +E +++ EE ++ +E +++ EE +++ +E ++ E +++ +E ++ EE
Sbjct: 1468 EAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520
Score = 35.5 bits (81), Expect = 0.12
Identities = 14/64 (21%), Positives = 41/64 (64%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
R E ++ EE+++ +E ++ EE+++ +E +++ EE ++ +E +++ EE +++ + +
Sbjct: 1277 ARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKK 1336
Query: 656 GGKE 659
+E
Sbjct: 1337 KAEE 1340
Score = 35.5 bits (81), Expect = 0.13
Identities = 19/83 (22%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 573 KVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEE----EEEEEEEEEEEEEEVQE 628
K + + +EI + RR + EE + +E EE+++ +E ++ EE ++
Sbjct: 1244 KAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKKAEEKKKADEAKKAEEKKK 1303
Query: 629 EEEEEEEEEEEEEEEEEEEEEEE 651
+E +++ EE ++ +E +++ EE
Sbjct: 1304 ADEAKKKAEEAKKADEAKKKAEE 1326
Score = 35.5 bits (81), Expect = 0.13
Identities = 11/51 (21%), Positives = 35/51 (68%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+++ EE ++ +E +++ EE +++ +E ++ E +++ +E ++ EE ++ +E
Sbjct: 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADE 1526
Score = 35.1 bits (80), Expect = 0.14
Identities = 11/62 (17%), Positives = 39/62 (62%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ ++ E ++ +E +++ EE ++ +E +++ E +++ +E ++ E +++ +E ++ EE
Sbjct: 1461 EAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEE 1520
Query: 653 VR 654
+
Sbjct: 1521 AK 1522
Score = 35.1 bits (80), Expect = 0.16
Identities = 12/53 (22%), Positives = 36/53 (67%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E ++ +++ +E +++ EE+++ +E +++ EE ++ +E +++ EE ++ EE
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEE 1461
Score = 35.1 bits (80), Expect = 0.17
Identities = 19/66 (28%), Positives = 39/66 (59%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ E +++ +E ++ EE ++ EE+++ EE + EE++ + EE ++ EE EEV
Sbjct: 1539 AKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVM 1598
Query: 655 GGGKEE 660
+EE
Sbjct: 1599 KLYEEE 1604
Score = 35.1 bits (80), Expect = 0.17
Identities = 14/74 (18%), Positives = 41/74 (55%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ E + ++ +E +++ EE ++ +E +++ EE + + +E ++ E +++ +E ++
Sbjct: 1458 KAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKK 1517
Query: 647 EEEEEEVRGGGKEE 660
EE ++ K E
Sbjct: 1518 AEEAKKADEAKKAE 1531
Score = 35.1 bits (80), Expect = 0.17
Identities = 10/52 (19%), Positives = 37/52 (71%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+++ EE++++ +E ++ +++ +E +++ EE+++ +E +++ EE ++ +E
Sbjct: 1397 KKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADE 1448
Score = 34.7 bits (79), Expect = 0.18
Identities = 13/65 (20%), Positives = 41/65 (63%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ + +++ EE ++ +E +++ EE ++ E +++ EE ++ +E +++ EE ++ +E +
Sbjct: 1430 KKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAK 1489
Query: 655 GGGKE 659
+E
Sbjct: 1490 KKAEE 1494
Score = 34.7 bits (79), Expect = 0.19
Identities = 10/53 (18%), Positives = 36/53 (67%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++++ +E ++ +++ +E +++ EE ++ +E +++ EE ++ +E +++ EE
Sbjct: 1403 DKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEE 1455
Score = 34.7 bits (79), Expect = 0.23
Identities = 18/71 (25%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE---EEEEEE 648
+ R+ E + EE + E+ + E + EEE + EE + E+ ++ E EE ++
Sbjct: 1178 AEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEAKK 1237
Query: 649 EEEEVRGGGKE 659
+ EE + +E
Sbjct: 1238 DAEEAKKAEEE 1248
Score = 34.3 bits (78), Expect = 0.23
Identities = 14/53 (26%), Positives = 38/53 (71%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E +++ EE+++ +E +++ EE ++ +E +++ EE ++ EE +++ EE ++ +E
Sbjct: 1422 EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADE 1474
Score = 34.3 bits (78), Expect = 0.23
Identities = 15/65 (23%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 592 IQLIRRGE--REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ +++ E +++ EE ++ EEE EE + EE + + + EE + +E ++
Sbjct: 1226 AEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELKK 1285
Query: 650 EEEVR 654
EE +
Sbjct: 1286 AEEKK 1290
Score = 34.3 bits (78), Expect = 0.24
Identities = 11/56 (19%), Positives = 40/56 (71%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+++ +E +++ EE++++ +E ++ +++ +E +++ EE+++ +E +++ EE +
Sbjct: 1389 EKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAK 1444
Score = 34.3 bits (78), Expect = 0.25
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 14/74 (18%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE---------- 644
R+ E + E+ ++ E ++ EE +++ EE ++ EEE EE + EE
Sbjct: 1211 ERKAEEARKAEDAKKAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQA 1270
Query: 645 ----EEEEEEEEVR 654
EE + +E++
Sbjct: 1271 AIKAEEARKADELK 1284
Score = 34.3 bits (78), Expect = 0.27
Identities = 13/61 (21%), Positives = 37/61 (60%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
++ +E +++ EE +++ +E ++ E ++ +E ++ EE ++ +E ++ EE ++ K
Sbjct: 1483 KKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKKADEAKKA 1542
Query: 660 E 660
E
Sbjct: 1543 E 1543
Score = 34.0 bits (77), Expect = 0.33
Identities = 16/61 (26%), Positives = 37/61 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ E E +E E EE+ E E+++EE +++ + +++ EE+++ +E +++ EE +
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408
Query: 659 E 659
E
Sbjct: 1409 E 1409
Score = 34.0 bits (77), Expect = 0.34
Identities = 14/61 (22%), Positives = 33/61 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++ + +++ EE ++ E + E E E E EE+ E E+++EE +++ + + +
Sbjct: 1329 KKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAE 1388
Query: 659 E 659
E
Sbjct: 1389 E 1389
Score = 34.0 bits (77), Expect = 0.38
Identities = 14/53 (26%), Positives = 38/53 (71%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+++ +E +++ EE ++ +E +++ EE ++ EE +++ EE ++ +E +++ EE
Sbjct: 1429 EKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
Score = 34.0 bits (77), Expect = 0.39
Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Query: 592 IQLIRRGE--REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+++ R+ E R+ EE + E+ ++ E + EE + +E + E+ + E + EEE +
Sbjct: 1154 VEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERK 1213
Query: 650 EEEVR 654
EE R
Sbjct: 1214 AEEAR 1218
Score = 33.6 bits (76), Expect = 0.41
Identities = 13/53 (24%), Positives = 38/53 (71%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+++ +E +++ EE+++ +E +++ EE ++ +E +++ EE ++ EE +++ EE
Sbjct: 1416 AKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
Score = 33.6 bits (76), Expect = 0.42
Identities = 17/66 (25%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 596 RRGE--REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++ E R+ EE + EE + E+ + E + +EE + EE + E+ ++ E ++ EE
Sbjct: 1176 KKAEAARKAEEVRKAEELRKAEDARKAEAARKAEEERKAEEARKAEDAKKAEAVKKAEEA 1235
Query: 654 RGGGKE 659
+ +E
Sbjct: 1236 KKDAEE 1241
Score = 33.6 bits (76), Expect = 0.43
Identities = 14/67 (20%), Positives = 41/67 (61%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ ++ E ++ +E +++ EE ++ EE +++ E ++ +E +++ EE ++ +E +++ EE
Sbjct: 1435 EAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEE 1494
Query: 653 VRGGGKE 659
+ E
Sbjct: 1495 AKKKADE 1501
Score = 33.6 bits (76), Expect = 0.44
Identities = 16/63 (25%), Positives = 38/63 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E ++ +E ++ EE+++ +E ++ EE + EE+++ EE ++ EE++ + EE + +
Sbjct: 1532 EAKKADEAKKAEEKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEE 1591
Query: 659 EEI 661
I
Sbjct: 1592 ARI 1594
Score = 33.6 bits (76), Expect = 0.45
Identities = 13/56 (23%), Positives = 32/56 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ EE ++ E + E E +E E ++ E E+++EE +++ + +++ EE +
Sbjct: 1336 KKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKK 1391
Score = 33.6 bits (76), Expect = 0.46
Identities = 14/62 (22%), Positives = 37/62 (59%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++ E + E E +E E EE+ E ++++EE +++ + +++ EE+++ +E + +
Sbjct: 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAE 1401
Query: 659 EE 660
E+
Sbjct: 1402 ED 1403
Score = 33.6 bits (76), Expect = 0.46
Identities = 13/62 (20%), Positives = 41/62 (66%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ ++ E +++ +E +++ EE ++ +E +++ E ++ EE +++ EE ++ +E +++ EE
Sbjct: 1422 EAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEE 1481
Query: 653 VR 654
+
Sbjct: 1482 AK 1483
Score = 33.6 bits (76), Expect = 0.47
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
Query: 595 IRRGE--REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R+ E R+ E+ + EE + E+ + E + ++ + EE + E+ ++ E + EE
Sbjct: 1127 ARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEE 1186
Query: 653 VR 654
VR
Sbjct: 1187 VR 1188
Score = 33.6 bits (76), Expect = 0.47
Identities = 14/58 (24%), Positives = 29/58 (50%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
EE + EE +++ E+ + EE ++ E+ + EE + E+ + E + K E +
Sbjct: 1112 EEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEA 1169
Score = 33.6 bits (76), Expect = 0.48
Identities = 12/62 (19%), Positives = 38/62 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+++ EE ++ +E +++ EE +++ +E + E +++ +E ++ EE ++ +E ++ K
Sbjct: 1476 KKKAEEAKKADEAKKKAEEAKKKADEAKKAAEAKKKADEAKKAEEAKKADEAKKAEEAKK 1535
Query: 659 EE 660
+
Sbjct: 1536 AD 1537
Score = 33.6 bits (76), Expect = 0.49
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
++ +E +++ EE +++ + +++ EE ++ E + E E +E E EE+ E KE
Sbjct: 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
Query: 660 E 660
E
Sbjct: 1375 E 1375
Score = 33.2 bits (75), Expect = 0.56
Identities = 11/61 (18%), Positives = 40/61 (65%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E +++ EE++++ +E ++ +++ + +++ EE+++ +E +++ EE ++ +E + +
Sbjct: 1395 EAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAE 1454
Query: 659 E 659
E
Sbjct: 1455 E 1455
Score = 33.2 bits (75), Expect = 0.60
Identities = 12/60 (20%), Positives = 38/60 (63%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE++++ +E ++ +++ +E ++ EE+++ +E +++ EE ++ +E +++ K E
Sbjct: 1401 EEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAE 1460
Score = 33.2 bits (75), Expect = 0.61
Identities = 16/65 (24%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 592 IQLIRRGE--REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ R+ E R+ EE + E+ + E + E+ + +E + E+ ++ E + EE +
Sbjct: 1130 AEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEARKAEDAKKAEAARKAEEVRK 1189
Query: 650 EEEVR 654
EE+R
Sbjct: 1190 AEELR 1194
Score = 33.2 bits (75), Expect = 0.64
Identities = 16/60 (26%), Positives = 32/60 (53%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E ++ E + EE + EE +++ E+ ++ EE + E+ + EE + E+ + V K E
Sbjct: 1102 EAKKTETGKAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAE 1161
Score = 33.2 bits (75), Expect = 0.68
Identities = 12/54 (22%), Positives = 35/54 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+++ +E +++ EE ++ +E +++ EE +++ + +++ EE ++ E + E E
Sbjct: 1300 EKKKADEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAE 1353
Score = 32.8 bits (74), Expect = 0.73
Identities = 11/64 (17%), Positives = 40/64 (62%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++ + ++ +++ +E +++ EE+++ + +++ EE ++ +E +++ EE ++ EE +
Sbjct: 1405 KKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKK 1464
Query: 656 GGKE 659
+E
Sbjct: 1465 KAEE 1468
Score = 32.8 bits (74), Expect = 0.75
Identities = 13/67 (19%), Positives = 40/67 (59%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ ++ E ++ EE +++ EE ++ +E +++ E ++ +E +++ EE +++ +E ++ E
Sbjct: 1448 EAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKKADEAKKKAEEAKKKADEAKKAAE 1507
Query: 653 VRGGGKE 659
+ E
Sbjct: 1508 AKKKADE 1514
Score = 32.8 bits (74), Expect = 0.78
Identities = 10/52 (19%), Positives = 37/52 (71%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+++ EE+++ +E +++ EE++++ +E + +++ +E +++ EE+++ +E
Sbjct: 1384 KKKAEEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADE 1435
Score = 32.4 bits (73), Expect = 0.99
Identities = 10/56 (17%), Positives = 37/56 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E +++ +E ++ +++ +E +++ E +++ +E +++ EE ++ +E +++ EE +
Sbjct: 1402 EDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1457
Score = 32.4 bits (73), Expect = 1.00
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
++ EE ++ EE+++ EE ++ EE++ + + EE ++ EE EE + EEE + +E
Sbjct: 1552 KKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEEKKMKAEE 1611
Score = 32.4 bits (73), Expect = 1.0
Identities = 14/60 (23%), Positives = 38/60 (63%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
Q + E + +E ++ EE+++ +E ++ EE+ + +E +++ EE ++ +E +++ EE +
Sbjct: 1269 QAAIKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAK 1328
Score = 32.4 bits (73), Expect = 1.0
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 579 DQDEIGSPRIENIIQL--IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
D D + E + + ++ + + +E+ +E EE + +E ++ E +
Sbjct: 1051 DIDGNHEGKAEAKAHVGQDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGK 1110
Query: 637 EEEEEEEEEEEEEEEEVR 654
EE + EE +++ E+ R
Sbjct: 1111 AEEARKAEEAKKKAEDAR 1128
Score = 32.4 bits (73), Expect = 1.1
Identities = 12/62 (19%), Positives = 38/62 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ +++ +E +++ EE+++ +E ++ EE ++ +E +++ EE ++ EE +++ K
Sbjct: 1412 KAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKK 1471
Query: 659 EE 660
+
Sbjct: 1472 AD 1473
Score = 32.4 bits (73), Expect = 1.1
Identities = 13/62 (20%), Positives = 41/62 (66%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+L + +++ +E +++ EE+++ +E +++ E ++ +E +++ EE ++ EE +++ EE
Sbjct: 1409 ELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEE 1468
Query: 653 VR 654
+
Sbjct: 1469 AK 1470
Score = 32.4 bits (73), Expect = 1.2
Identities = 14/53 (26%), Positives = 29/53 (54%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ +E+ +E EE + EE ++ + + EE + EE +++ E+ + EE R
Sbjct: 1082 DAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDARKAEEAR 1134
Score = 32.4 bits (73), Expect = 1.2
Identities = 14/52 (26%), Positives = 30/52 (57%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE +++ + +++ EE ++ E + + E +E E EE+ E E+++EE
Sbjct: 1325 EEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEA 1376
Score = 32.0 bits (72), Expect = 1.2
Identities = 15/63 (23%), Positives = 34/63 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+++ + +++ EE ++ E + E E +E E EE+ E E+++EE +++ +
Sbjct: 1328 KKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKA 1387
Query: 659 EEI 661
EE
Sbjct: 1388 EEK 1390
Score = 32.0 bits (72), Expect = 1.4
Identities = 14/58 (24%), Positives = 39/58 (67%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
I+ E + +E ++ EE+++ +E ++ EE++ +E +++ EE ++ +E +++ EE ++
Sbjct: 1272 IKAEEARKADELKKAEEKKKADEAKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKK 1329
Score = 32.0 bits (72), Expect = 1.4
Identities = 12/53 (22%), Positives = 32/53 (60%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++ EE ++ +E +++ EE +++ + +++ EE ++ E + E E +E E
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360
Score = 32.0 bits (72), Expect = 1.4
Identities = 11/60 (18%), Positives = 40/60 (66%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE+++ +E +++ EE++++ +E ++ +++ +E +++ EE+++ +E +++ K +
Sbjct: 1388 EEKKKADEAKKKAEEDKKKADELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKAD 1447
Score = 32.0 bits (72), Expect = 1.5
Identities = 14/62 (22%), Positives = 40/62 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++ EE+++ +E +++ EE ++ +E ++ EE ++ EE +++ EE ++ +E +++ K
Sbjct: 1425 KKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAEEAKKADEAKKKAEEAKK 1484
Query: 659 EE 660
+
Sbjct: 1485 AD 1486
Score = 31.6 bits (71), Expect = 1.6
Identities = 15/56 (26%), Positives = 32/56 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ EE +++ + +++ EE ++ E E E +E E EE+ E E+++EE +
Sbjct: 1322 KKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAK 1377
Score = 31.6 bits (71), Expect = 1.6
Identities = 12/60 (20%), Positives = 36/60 (60%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+E ++ +++ +E +++ EE+++ E +++ EE ++ +E +++ EE ++ K E
Sbjct: 1408 DELKKAAAAKKKADEAKKKAEEKKKADEAKKKAEEAKKADEAKKKAEEAKKAEEAKKKAE 1467
Score = 31.6 bits (71), Expect = 1.8
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
+ E + EE +++ E+ + EE + E+ ++ EE + E+ + E + E+ +
Sbjct: 1110 KAEEARKAEEAKKKAEDARKAEEARKAEDARKAEEARKAEDAKRVEIARKAEDARKAEEA 1169
Query: 657 GKEE 660
K E
Sbjct: 1170 RKAE 1173
Score = 31.3 bits (70), Expect = 2.1
Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE- 638
QDE P ++ + R +E EE + EE ++ E + EE ++ EE +++ E+
Sbjct: 1068 QDEGLKPSYKDFDFDAKEDNRADEATEEAFGKAEEAKKTETGKAEEARKAEEAKKKAEDA 1127
Query: 639 ---EEEEEEEEEEEEEEVR 654
EE + E+ + EE R
Sbjct: 1128 RKAEEARKAEDARKAEEAR 1146
Score = 31.3 bits (70), Expect = 2.1
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ E + E E +E E EE+ E E++ +E +++ + +++ EE+++ +E
Sbjct: 1343 KAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395
Score = 31.3 bits (70), Expect = 2.1
Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEE---------EVQEEEEEEEEEEEEEEEEEE 645
++ + ++ EE ++ EE+++ EE ++ EE E ++ EE EE + EEE
Sbjct: 1545 KKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEEE 1604
Query: 646 EEEEEEEVRGGGKEEI 661
++ + EE + + +I
Sbjct: 1605 KKMKAEEAKKAEEAKI 1620
Score = 30.9 bits (69), Expect = 3.4
Identities = 13/60 (21%), Positives = 34/60 (56%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ ++ E +++ + +++ EE ++ E + E + +E E EE+ E E+++EE ++
Sbjct: 1319 EAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKK 1378
Score = 30.5 bits (68), Expect = 4.1
Identities = 14/62 (22%), Positives = 32/62 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++ +E +++ EE +++ + +++ EE + E + E E +E E EE+ E +
Sbjct: 1315 KKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKE 1374
Query: 659 EE 660
E
Sbjct: 1375 EA 1376
Score = 30.5 bits (68), Expect = 4.2
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
++ + E E +E E EE+ E E+ +EE +++ + +++ EE+++ +E
Sbjct: 1342 KKAAEAAKAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADE 1395
Score = 30.5 bits (68), Expect = 4.3
Identities = 14/59 (23%), Positives = 31/59 (52%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E +++ EE +++ + +++ EE ++ E + E E +E E EE+ E E +
Sbjct: 1314 AKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEKAEAAEKK 1372
Score = 30.1 bits (67), Expect = 5.3
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 10/78 (12%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEE----------EVQEEEEEEEEE 636
+ E + + + EE ++ EEE EE + EE + +E + +E +
Sbjct: 1225 KAEAVKKAEEAKKDAEEAKKAEEERNNEEIRKFEEARMAHFARRQAAIKAEEARKADELK 1284
Query: 637 EEEEEEEEEEEEEEEEVR 654
+ EE+++ +E ++ EE +
Sbjct: 1285 KAEEKKKADEAKKAEEKK 1302
Score = 30.1 bits (67), Expect = 5.5
Identities = 12/53 (22%), Positives = 31/53 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+++ EE ++ +E +++ EE +++ + ++ EE ++ E + E E +E E
Sbjct: 1308 KKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAE 1360
Score = 29.7 bits (66), Expect = 6.1
Identities = 12/58 (20%), Positives = 32/58 (55%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ E ++ +E +++ EE +++ + +++ +E ++ E + E E +E E EE
Sbjct: 1307 AKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
Score = 29.7 bits (66), Expect = 6.2
Identities = 13/60 (21%), Positives = 32/60 (53%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+E +++ EE ++ +E +++ EE ++ + +++ EE ++ E + E E EE
Sbjct: 1305 DEAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEE 1364
Score = 29.3 bits (65), Expect = 9.1
Identities = 14/62 (22%), Positives = 34/62 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E +++ EE ++ +E +++ EE +++ + +++ EE ++ E + E E +E K
Sbjct: 1306 EAKKKAEEAKKADEAKKKAEEAKKKADAAKKKAEEAKKAAEAAKAEAEAAADEAEAAEEK 1365
Query: 659 EE 660
E
Sbjct: 1366 AE 1367
Score = 29.3 bits (65), Expect = 9.1
Identities = 17/62 (27%), Positives = 38/62 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E+++ +E ++ EE ++ EE+++ EE + EE++ + EE ++ EE EE ++ +
Sbjct: 1544 EKKKADELKKAEELKKAEEKKKAEEAKKAEEDKNMALRKAEEAKKAEEARIEEVMKLYEE 1603
Query: 659 EE 660
E+
Sbjct: 1604 EK 1605
Score = 29.3 bits (65), Expect = 9.4
Identities = 14/62 (22%), Positives = 36/62 (58%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+ E E +E E EE+ E E+++E +++ + +++ EE+++ +E +++ E +
Sbjct: 1349 KAEAEAAADEAEAAEEKAEAAEKKKEEAKKKADAAKKKAEEKKKADEAKKKAEEDKKKAD 1408
Query: 660 EI 661
E+
Sbjct: 1409 EL 1410
>gnl|CDD|220972 pfam11081, DUF2890, Protein of unknown function (DUF2890). This
family is conserved in dsDNA adenoviruses of
vertebrates. The function is not known.
Length = 172
Score = 52.2 bits (125), Expect = 8e-08
Identities = 24/62 (38%), Positives = 36/62 (58%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++EEE+ + + EE EE+EEE E+ E +EE+EE EE EEE + + +E
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQET 77
Query: 661 IS 662
IS
Sbjct: 78 IS 79
Score = 50.3 bits (120), Expect = 4e-07
Identities = 21/42 (50%), Positives = 30/42 (71%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+ EEE+ + + EE EE+EEE E+ E+ + EE+EE EE EEE
Sbjct: 18 KDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 49.5 bits (118), Expect = 7e-07
Identities = 22/51 (43%), Positives = 32/51 (62%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+L R ++EEE+ + + EE EE+EEE E+ +EE+EE EE EEE
Sbjct: 9 KLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 49.5 bits (118), Expect = 7e-07
Identities = 20/56 (35%), Positives = 34/56 (60%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ ++ + ++EEE+ + + EE EE +EE E+ E+ +EE+EE EE EEE
Sbjct: 4 KGNAKKLKVRPPPTKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEEAEEVEEET 59
Score = 40.7 bits (95), Expect = 6e-04
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E +EEE E+ E+ +EE+EE EE EEE + + +E
Sbjct: 32 EEDEEEMEDWEDSLDEEDEEAEEVEEETAASSKAPSSSSKSSSQETIS 79
Score = 38.4 bits (89), Expect = 0.004
Identities = 18/55 (32%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E EE+EEE E+ E+ +EE+EE EE EEE + + +E +
Sbjct: 30 EVEEDEEEMEDWEDSLDEEDEEAEE----VEEETAASSKAPSSSSKSSSQETISI 80
Score = 31.8 bits (72), Expect = 0.67
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEE 652
++EEE+ + + EE EE+EEE E+ E
Sbjct: 17 TKDEEEDWDSQAEEVEEDEEEMEDWE 42
Score = 31.4 bits (71), Expect = 0.93
Identities = 14/35 (40%), Positives = 22/35 (62%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++EEE+ + + EE EE+EEE E+ E+ EE
Sbjct: 17 TKDEEEDWDSQAEEVEEDEEEMEDWEDSLDEEDEE 51
Score = 29.5 bits (66), Expect = 3.3
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEE 652
++EEE+ + + EE EE+EEE E+
Sbjct: 16 PTKDEEEDWDSQAEEVEEDEEEMEDW 41
>gnl|CDD|217840 pfam04006, Mpp10, Mpp10 protein. This family includes proteins
related to Mpp10 (M phase phosphoprotein 10). The U3
small nucleolar ribonucleoprotein (snoRNP) is required
for three cleavage events that generate the mature 18S
rRNA from the pre-rRNA. In Saccharomyces cerevisiae,
depletion of Mpp10, a U3 snoRNP-specific protein, halts
18S rRNA production and impairs cleavage at the three U3
snoRNP-dependent sites.
Length = 613
Score = 55.0 bits (132), Expect = 9e-08
Identities = 30/109 (27%), Positives = 52/109 (47%), Gaps = 2/109 (1%)
Query: 553 QSLWDNVPNTNKLKTIRPS-IKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEE 611
+ + D++ I I+V QD + + ++EEEEEE+E
Sbjct: 68 KPILDDLNQKYVEFLINKEHIRVLAKL-QDSESHEDGSDGSDMDSEDSADDEEEEEEDES 126
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E+E ++E+E + E E E+ ++E E++EE++ EEE G KE
Sbjct: 127 LEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKES 175
Score = 52.7 bits (126), Expect = 4e-07
Identities = 23/65 (35%), Positives = 39/65 (60%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E ++EEEEEE+E E+E ++E+E E E E+ ++E E++EE++ E G
Sbjct: 111 SEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAG 170
Query: 658 KEEIS 662
+E+ S
Sbjct: 171 EEKES 175
Score = 50.8 bits (121), Expect = 2e-06
Identities = 25/86 (29%), Positives = 39/86 (45%), Gaps = 6/86 (6%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEE------EEEEEEEEEEEEEEEEVQEE 629
S +D +++ E EE+E E+E E + E E E+ E
Sbjct: 97 SESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDET 156
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEVRG 655
E++EE++ EEEE EE+E E+ R
Sbjct: 157 EDDEEKKMEEEEAGEEKESVEQATRE 182
Score = 46.5 bits (110), Expect = 4e-05
Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 6/93 (6%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE------EEEEEEEEE 642
E+I L + + E E+ + + + E+ ++EEEEE E E+E E + E E
Sbjct: 86 EHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDESLEDEMIDDEDEADLFNESE 145
Query: 643 EEEEEEEEEEVRGGGKEEISLHFYVLYVLSKGK 675
E+ ++E ++++ S +
Sbjct: 146 SSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQ 178
Score = 45.8 bits (108), Expect = 6e-05
Identities = 16/53 (30%), Positives = 34/53 (64%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++E + + EEE+EE++E+E++++EEE E ++ + +E E + E +E
Sbjct: 286 KKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKEL 338
Score = 45.4 bits (107), Expect = 8e-05
Identities = 15/76 (19%), Positives = 36/76 (47%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + I+ + + E +E + ++ E E+ + + E+ ++EEEEEE+E
Sbjct: 66 QNKPILDDLNQKYVEFLINKEHIRVLAKLQDSESHEDGSDGSDMDSEDSADDEEEEEEDE 125
Query: 647 EEEEEEVRGGGKEEIS 662
E+E + + ++
Sbjct: 126 SLEDEMIDDEDEADLF 141
Score = 45.0 bits (106), Expect = 1e-04
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 15/81 (18%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE---------------EEEEEE 642
E E+ ++E E++EE++ EEEE E +E E+ E +E E
Sbjct: 144 SESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKSGVDDKFFKLDEMNEF 203
Query: 643 EEEEEEEEEEVRGGGKEEISL 663
E E EEE G +
Sbjct: 204 LEATEAEEEAALGDEDDFEDY 224
Score = 45.0 bits (106), Expect = 1e-04
Identities = 20/77 (25%), Positives = 47/77 (61%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ + DE G+ E+ + ++++ ++ E E++E ++E ++E + EEE+EE++
Sbjct: 242 EDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDD 301
Query: 636 EEEEEEEEEEEEEEEEE 652
E+E++++EEE E +
Sbjct: 302 EQEDDQDEEEPPEAAMD 318
Score = 44.6 bits (105), Expect = 2e-04
Identities = 22/76 (28%), Positives = 38/76 (50%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
S DE E++ + E E + E E E+ ++E E++EE + EEEE EE+
Sbjct: 114 SADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEK 173
Query: 638 EEEEEEEEEEEEEEEV 653
E E+ E++ ++
Sbjct: 174 ESVEQATREKKFDKSG 189
Score = 44.6 bits (105), Expect = 2e-04
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E ++E + + EEE+EE++E+E++++E + E ++ + +E E + E +
Sbjct: 281 DKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKE 337
Score = 44.2 bits (104), Expect = 2e-04
Identities = 17/55 (30%), Positives = 34/55 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E ++E ++E + + EEE+EE++E+E+ Q+EEE E ++ + +E E +
Sbjct: 279 EPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLE 333
Score = 43.4 bits (102), Expect = 4e-04
Identities = 15/55 (27%), Positives = 34/55 (61%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++E + + EEE+EE++E+E++++EEE + ++ + +E E + E +E
Sbjct: 284 AVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKEL 338
Score = 43.1 bits (101), Expect = 4e-04
Identities = 15/55 (27%), Positives = 34/55 (61%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++E ++E + + EEE+EE++E+E+++ +EE E ++ + +E E + E
Sbjct: 280 PDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLES 334
Score = 43.1 bits (101), Expect = 4e-04
Identities = 20/76 (26%), Positives = 38/76 (50%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+D +E ++I + + E E E+ ++E E++EE+ EEEE EE+E
Sbjct: 115 ADDEEEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKE 174
Query: 638 EEEEEEEEEEEEEEEV 653
E+ E++ ++ V
Sbjct: 175 SVEQATREKKFDKSGV 190
Score = 43.1 bits (101), Expect = 4e-04
Identities = 17/54 (31%), Positives = 32/54 (59%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ EEE+EE++E+E++++EEE E ++ + +E E + E +E E R
Sbjct: 291 SKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKELSSFEKR 344
Score = 43.1 bits (101), Expect = 4e-04
Identities = 16/56 (28%), Positives = 33/56 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ EEE+EE++E+E++++EEE E + + +E E + E +E E+ + +
Sbjct: 292 KPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKELSSFEKRQAK 347
Score = 43.1 bits (101), Expect = 5e-04
Identities = 19/66 (28%), Positives = 40/66 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E +E ++E ++E + + EEE+EE++E +++++EEE E ++ + +E E V
Sbjct: 276 EDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESP 335
Query: 659 EEISLH 664
+E+S
Sbjct: 336 KELSSF 341
Score = 42.7 bits (100), Expect = 6e-04
Identities = 16/55 (29%), Positives = 32/55 (58%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E ++E + + EEE+EE++E+E++ EEE E ++ + +E E + E
Sbjct: 279 EPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLE 333
Score = 41.9 bits (98), Expect = 0.001
Identities = 18/64 (28%), Positives = 38/64 (59%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+ + EEE+EE++E+E++++EEE E + + + +E E + E +E E+ +
Sbjct: 289 ADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKELSSFEKRQAKL 348
Query: 658 KEEI 661
K++I
Sbjct: 349 KQQI 352
Score = 41.5 bits (97), Expect = 0.001
Identities = 17/68 (25%), Positives = 38/68 (55%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ ++E + + EEE+EE++E+E++++EE E ++ + +E E + E +E+
Sbjct: 281 DKEAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKELSS 340
Query: 656 GGKEEISL 663
K + L
Sbjct: 341 FEKRQAKL 348
Score = 40.4 bits (94), Expect = 0.003
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ + + EEE+EE++E+E++++EEE ++ + +E E + E +E
Sbjct: 283 EAVKKEADSKPEEEDEEDDEQEDDQDEEEPPEAAMDKVKLDEPVLEGVDLESPKEL 338
Score = 40.4 bits (94), Expect = 0.003
Identities = 23/94 (24%), Positives = 36/94 (38%), Gaps = 22/94 (23%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+++E S E I E E E+ ++E E++EE++ EE + EE+E E+
Sbjct: 119 EEEEEDESLEDEMIDDEDEADLFNESESSLEDLSDDETEDDEEKKMEEEEAGEEKESVEQ 178
Query: 638 EEEE----------------------EEEEEEEE 649
E E E EEE
Sbjct: 179 ATREKKFDKSGVDDKFFKLDEMNEFLEATEAEEE 212
Score = 38.4 bits (89), Expect = 0.014
Identities = 17/52 (32%), Positives = 42/52 (80%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+E++++++ ++ E E++E ++E V++E + + EEE+EE++E+E++++EEE
Sbjct: 261 KEKDKKKDAGDDAELEDDEPDKEAVKKEADSKPEEEDEEDDEQEDDQDEEEP 312
Score = 37.7 bits (87), Expect = 0.022
Identities = 16/53 (30%), Positives = 31/53 (58%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E E EEE +E++ E+ Q++ E+ +++E+ E+EE++EE +
Sbjct: 201 NEFLEATEAEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIE 253
Score = 35.0 bits (80), Expect = 0.13
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E E E EEE +E++ E+ +++ E+ +++E+ E+EE++EE
Sbjct: 199 EMNEFLEATEAEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEG 250
Score = 34.2 bits (78), Expect = 0.23
Identities = 17/76 (22%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 577 TSDQDEIGSPRIENII--QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+ +Q ++ + + + E E E E EEE +E++ E+ + E+ ++
Sbjct: 175 SVEQATREKKFDKSGVDDKFFKLDEMNEFLEATEAEEEAALGDEDDFEDYFQDDSEDGKD 234
Query: 635 EEEEEEEEEEEEEEEE 650
+E+ E+EE++EE
Sbjct: 235 DEDFGSGEDEEDDEEG 250
Score = 31.5 bits (71), Expect = 1.7
Identities = 19/94 (20%), Positives = 37/94 (39%), Gaps = 28/94 (29%)
Query: 597 RGEREEEEEEEEEEEEEEEEE----------------------------EEEEEEEEVQE 628
+ E++EE++ EEEE EE E E E +E
Sbjct: 152 SDDETEDDEEKKMEEEEAGEEKESVEQATREKKFDKSGVDDKFFKLDEMNEFLEATEAEE 211
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E +E++ E+ +++ E+ +++ G E+
Sbjct: 212 EAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEE 245
Score = 30.0 bits (67), Expect = 5.3
Identities = 18/80 (22%), Positives = 40/80 (50%), Gaps = 20/80 (25%)
Query: 601 EEEEEEEEEEEEEEEEEE--------------------EEEEEEEVQEEEEEEEEEEEEE 640
+++E+ E+EE++EE ++ E E+ + ++E ++E + +
Sbjct: 233 KDDEDFGSGEDEEDDEEGNIEYEDFFDPKEKDKKKDAGDDAELEDDEPDKEAVKKEADSK 292
Query: 641 EEEEEEEEEEEEVRGGGKEE 660
EEE+EE++E+E +E
Sbjct: 293 PEEEDEEDDEQEDDQDEEEP 312
Score = 29.6 bits (66), Expect = 6.1
Identities = 17/80 (21%), Positives = 43/80 (53%), Gaps = 5/80 (6%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEE-----EEEEEEEVQEEEEEEEEEEEEEEE 642
++ + + + E EEE +E++ E+ ++ +++E+ E+EE++EE E E+
Sbjct: 197 LDEMNEFLEATEAEEEAALGDEDDFEDYFQDDSEDGKDDEDFGSGEDEEDDEEGNIEYED 256
Query: 643 EEEEEEEEEEVRGGGKEEIS 662
+ +E++++ G E+
Sbjct: 257 FFDPKEKDKKKDAGDDAELE 276
Score = 29.6 bits (66), Expect = 6.1
Identities = 13/76 (17%), Positives = 32/76 (42%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
++ + + + +E E + E +E E+ Q + +++ E+ E+E +
Sbjct: 306 DQDEEEPPEAAMDKVKLDEPVLEGVDLESPKELSSFEKRQAKLKQQIEQLEKENLAPKSW 365
Query: 648 EEEEEVRGGGKEEISL 663
+ EV + + SL
Sbjct: 366 TLKGEVTAKKRPQNSL 381
>gnl|CDD|219408 pfam07423, DUF1510, Protein of unknown function (DUF1510). This
family consists of several hypothetical bacterial
proteins of around 200 residues in length. The function
of this family is unknown.
Length = 214
Score = 52.8 bits (127), Expect = 1e-07
Identities = 25/59 (42%), Positives = 38/59 (64%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
++E E EE +EEE+E E++E++ E+E+EE EEE EEE+EE +E E+E
Sbjct: 55 DDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEK 113
Score = 52.8 bits (127), Expect = 1e-07
Identities = 25/64 (39%), Positives = 39/64 (60%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
+ + +E E EE +EEE+E E++E++ E+E+EE EEE EEE+EE +E E+
Sbjct: 53 KSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEE 112
Query: 657 GKEE 660
E
Sbjct: 113 KTES 116
Score = 51.7 bits (124), Expect = 2e-07
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 10/94 (10%)
Query: 559 VPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEE 618
P++ + + K+ DQ+ I + EE+E E++E++ + E
Sbjct: 36 FPSSPSDQAAADEQEAKKSDDQET----------AEIEEVKEEEKEAANSEDKEDKGDAE 85
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E+EE E + EEE+EE +E E+E EE+ E E
Sbjct: 86 KEDEESEEENEEEDEESSDENEKETEEKTESNVE 119
Score = 48.6 bits (116), Expect = 3e-06
Identities = 21/51 (41%), Positives = 33/51 (64%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E++E++ + E+E+EE EEE EEE+E +E E+E EE+ E E+E
Sbjct: 76 EDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 45.9 bits (109), Expect = 2e-05
Identities = 23/61 (37%), Positives = 40/61 (65%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E ++ +++E E EE +EEE+E E++E++ + E+E+EE EEE EEE+E E+
Sbjct: 50 EAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSDENEKE 109
Query: 662 S 662
+
Sbjct: 110 T 110
Score = 44.3 bits (105), Expect = 7e-05
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++E++ + E+E+EE EEE EEE+EE + E+E EE+ E E+E
Sbjct: 77 DKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 43.2 bits (102), Expect = 1e-04
Identities = 23/55 (41%), Positives = 34/55 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E +E++ + E+E+EE EEE EEE+EE E E+E EE+ E E+E + V
Sbjct: 76 EDKEDKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPSWKPV 130
Score = 40.5 bits (95), Expect = 0.001
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E+E+EE EEE EEE+EE +E E+ EE+ E E+E
Sbjct: 80 DKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 40.1 bits (94), Expect = 0.002
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+E+E ++ +++E E EE +EEE + E++E++ + E+E+EE EEE E +
Sbjct: 46 ADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEESSD 104
Score = 39.7 bits (93), Expect = 0.002
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 9/69 (13%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQE---------EEEEEEEEEEEEEEEEEEEEEEE 651
++ +E+E ++ +++E E EE + +E E++ + E+E+EE EEE EEE+EE
Sbjct: 42 DQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEENEEEDEE 101
Query: 652 EVRGGGKEE 660
KE
Sbjct: 102 SSDENEKET 110
Score = 38.9 bits (91), Expect = 0.004
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+G+ E+E+EE EEE EEE+EE +E E+E +E+ E E+E
Sbjct: 80 DKGDAEKEDEESEEENEEEDEESSDENEKETEEKTESNVEKEITNPS 126
Score = 36.6 bits (85), Expect = 0.025
Identities = 14/54 (25%), Positives = 33/54 (61%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++ +E+E ++ +++E + EE +EEE+E E++E++ + E+ +EE
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEESEEE 94
Score = 30.1 bits (68), Expect = 2.7
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
++ +E+E ++ +E E EE +EEE+E E++E++ ++E S
Sbjct: 41 SDQAAADEQEAKKSDDQETAEIEEVKEEEKEAANSEDKEDKGDAEKEDEES 91
>gnl|CDD|223003 PHA03169, PHA03169, hypothetical protein; Provisional.
Length = 413
Score = 54.2 bits (130), Expect = 1e-07
Identities = 10/62 (16%), Positives = 13/62 (20%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E Q + E+ EE E E E G
Sbjct: 133 SHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGP 192
Query: 658 KE 659
+
Sbjct: 193 PQ 194
Score = 54.2 bits (130), Expect = 1e-07
Identities = 12/70 (17%), Positives = 14/70 (20%), Gaps = 5/70 (7%)
Query: 596 RRGEREEEEE-----EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
R GE+EE + E EE E E
Sbjct: 80 RHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPS 139
Query: 651 EEVRGGGKEE 660
G E
Sbjct: 140 PPSHPGPHEP 149
Score = 53.1 bits (127), Expect = 3e-07
Identities = 10/62 (16%), Positives = 14/62 (22%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E Q+ + E+ EE E E E G
Sbjct: 133 SHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGP 192
Query: 659 EE 660
+
Sbjct: 193 PQ 194
Score = 53.1 bits (127), Expect = 3e-07
Identities = 10/62 (16%), Positives = 15/62 (24%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E + + E+ EE E E E + G +
Sbjct: 135 SPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQ 194
Query: 659 EE 660
E
Sbjct: 195 SE 196
Score = 52.7 bits (126), Expect = 4e-07
Identities = 6/63 (9%), Positives = 9/63 (14%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
EE E E E E ++
Sbjct: 108 SGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFL 167
Query: 658 KEE 660
+
Sbjct: 168 QPS 170
Score = 51.9 bits (124), Expect = 6e-07
Identities = 11/68 (16%), Positives = 20/68 (29%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ + E + +E E ++ ++ E E+E E E G
Sbjct: 188 DSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPF 247
Query: 659 EEISLHFY 666
H Y
Sbjct: 248 PGHRSHSY 255
Score = 51.9 bits (124), Expect = 6e-07
Identities = 6/62 (9%), Positives = 10/62 (16%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E E ++ + E+ E
Sbjct: 123 TSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPT 182
Query: 659 EE 660
E
Sbjct: 183 SE 184
Score = 51.9 bits (124), Expect = 6e-07
Identities = 6/65 (9%), Positives = 7/65 (10%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EE E E E E
Sbjct: 97 SESVGSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHN 156
Query: 656 GGKEE 660
+
Sbjct: 157 PSPNQ 161
Score = 51.5 bits (123), Expect = 8e-07
Identities = 6/63 (9%), Positives = 9/63 (14%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E E E E ++
Sbjct: 111 AEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPS 170
Query: 658 KEE 660
E+
Sbjct: 171 HED 173
Score = 51.1 bits (122), Expect = 1e-06
Identities = 6/63 (9%), Positives = 7/63 (11%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
EE E E E E
Sbjct: 102 SPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQ 161
Query: 658 KEE 660
+
Sbjct: 162 QPS 164
Score = 51.1 bits (122), Expect = 1e-06
Identities = 9/63 (14%), Positives = 15/63 (23%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E ++ + E+ EE E E E + + E
Sbjct: 142 SHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSS 201
Query: 658 KEE 660
Sbjct: 202 PPP 204
Score = 51.1 bits (122), Expect = 1e-06
Identities = 5/62 (8%), Positives = 11/62 (17%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E E E E ++ ++ +
Sbjct: 113 ELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHE 172
Query: 659 EE 660
+
Sbjct: 173 DS 174
Score = 51.1 bits (122), Expect = 1e-06
Identities = 6/63 (9%), Positives = 6/63 (9%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
EE E E E E
Sbjct: 103 PTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQ 162
Query: 658 KEE 660
Sbjct: 163 PSS 165
Score = 50.7 bits (121), Expect = 1e-06
Identities = 7/67 (10%), Positives = 9/67 (13%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
EE E E E E +
Sbjct: 106 SPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSS 165
Query: 658 KEEISLH 664
+ S
Sbjct: 166 FLQPSHE 172
Score = 50.7 bits (121), Expect = 1e-06
Identities = 14/70 (20%), Positives = 18/70 (25%), Gaps = 7/70 (10%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEE-------EEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
G R+ E + E EE E+EE + E V EE E
Sbjct: 65 GHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTS 124
Query: 651 EEVRGGGKEE 660
Sbjct: 125 GSSPESPASH 134
Score = 50.7 bits (121), Expect = 2e-06
Identities = 16/94 (17%), Positives = 25/94 (26%), Gaps = 2/94 (2%)
Query: 566 KTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
T + K + P++ + + R + E EE E+EE +
Sbjct: 38 GTAARAAKPAPPAPTTS--GPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGS 95
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E EE E G E
Sbjct: 96 GSESVGSPTPSPSGSAEELASGLSPENTSGSSPE 129
Score = 50.7 bits (121), Expect = 2e-06
Identities = 9/63 (14%), Positives = 14/63 (22%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E ++ + E+ EE E E E +
Sbjct: 135 SPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQ 194
Query: 658 KEE 660
E
Sbjct: 195 SET 197
Score = 50.7 bits (121), Expect = 2e-06
Identities = 9/55 (16%), Positives = 18/55 (32%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E + +E E + ++ ++ E E+E E E E
Sbjct: 190 PGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREG 244
Score = 50.4 bits (120), Expect = 2e-06
Identities = 7/62 (11%), Positives = 15/62 (24%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E ++ + E+ EE + E E + + E
Sbjct: 150 APPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPD 209
Query: 658 KE 659
+
Sbjct: 210 EP 211
Score = 50.0 bits (119), Expect = 3e-06
Identities = 6/54 (11%), Positives = 10/54 (18%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E ++ + E+ EE E
Sbjct: 127 SPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEP 180
Score = 50.0 bits (119), Expect = 3e-06
Identities = 14/60 (23%), Positives = 18/60 (30%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E+ + E + E EE E+EE Q E EE G E
Sbjct: 63 EQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPEN 122
Score = 49.6 bits (118), Expect = 3e-06
Identities = 10/63 (15%), Positives = 16/63 (25%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
G E E ++ + E EE E E E + + E
Sbjct: 145 GPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPP 204
Query: 658 KEE 660
+
Sbjct: 205 QSP 207
Score = 49.6 bits (118), Expect = 3e-06
Identities = 5/61 (8%), Positives = 9/61 (14%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E E E ++ + +
Sbjct: 117 GLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPE 176
Query: 659 E 659
E
Sbjct: 177 E 177
Score = 49.6 bits (118), Expect = 3e-06
Identities = 7/63 (11%), Positives = 13/63 (20%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E E ++ + E+ EE E
Sbjct: 126 SSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEP 185
Query: 658 KEE 660
+ +
Sbjct: 186 EPD 188
Score = 49.6 bits (118), Expect = 4e-06
Identities = 9/54 (16%), Positives = 17/54 (31%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ E + +E E + + ++ E E+E E E E
Sbjct: 193 PQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPP 246
Score = 49.6 bits (118), Expect = 4e-06
Identities = 6/63 (9%), Positives = 8/63 (12%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
G EE E E E
Sbjct: 101 GSPTPSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPN 160
Query: 658 KEE 660
++
Sbjct: 161 QQP 163
Score = 49.6 bits (118), Expect = 4e-06
Identities = 4/62 (6%), Positives = 8/62 (12%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E E ++ + E+
Sbjct: 122 NTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPP 181
Query: 659 EE 660
Sbjct: 182 TS 183
Score = 49.6 bits (118), Expect = 4e-06
Identities = 10/55 (18%), Positives = 17/55 (30%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E + +E E + Q ++ E E+E E E E
Sbjct: 192 PPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPP 246
Score = 49.2 bits (117), Expect = 4e-06
Identities = 6/63 (9%), Positives = 9/63 (14%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E E E ++ +
Sbjct: 115 ASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDS 174
Query: 658 KEE 660
EE
Sbjct: 175 PEE 177
Score = 49.2 bits (117), Expect = 5e-06
Identities = 9/62 (14%), Positives = 18/62 (29%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
++ + E+ EE E E E + E + +E E
Sbjct: 160 NQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTP 219
Query: 658 KE 659
++
Sbjct: 220 QQ 221
Score = 49.2 bits (117), Expect = 5e-06
Identities = 6/62 (9%), Positives = 7/62 (11%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
EE E E E E +
Sbjct: 105 PSPSGSAEELASGLSPENTSGSSPESPASHSPPPSPPSHPGPHEPAPPESHNPSPNQQPS 164
Query: 658 KE 659
Sbjct: 165 SF 166
Score = 48.8 bits (116), Expect = 6e-06
Identities = 8/60 (13%), Positives = 15/60 (25%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E ++ + E+ E E E E + + E + E
Sbjct: 152 PESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEP 211
Score = 48.4 bits (115), Expect = 9e-06
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ +E E + ++ Q+ E E+E E E E
Sbjct: 199 TSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFP 248
Score = 48.4 bits (115), Expect = 9e-06
Identities = 13/75 (17%), Positives = 16/75 (21%), Gaps = 10/75 (13%)
Query: 596 RRGEREEEEEEEEEEEEEEEE----------EEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
R+ E + E EE E+EE E EE E
Sbjct: 67 RQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSPENTSGS 126
Query: 646 EEEEEEEVRGGGKEE 660
E
Sbjct: 127 SPESPASHSPPPSPP 141
Score = 48.0 bits (114), Expect = 1e-05
Identities = 8/62 (12%), Positives = 13/62 (20%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E ++ E+ EE E E E + +
Sbjct: 141 PSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTS 200
Query: 659 EE 660
Sbjct: 201 SP 202
Score = 47.7 bits (113), Expect = 1e-05
Identities = 10/63 (15%), Positives = 17/63 (26%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+ E+ EE E E E + Q E + +E E + +
Sbjct: 165 SFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPS 224
Query: 658 KEE 660
Sbjct: 225 PNT 227
Score = 47.7 bits (113), Expect = 1e-05
Identities = 13/61 (21%), Positives = 19/61 (31%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E+ + E + E EE E+EE + E EE+ G
Sbjct: 61 VAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELASGLSP 120
Query: 660 E 660
E
Sbjct: 121 E 121
Score = 47.7 bits (113), Expect = 1e-05
Identities = 10/57 (17%), Positives = 18/57 (31%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E + +E E + ++ ++ E E+E E E E R
Sbjct: 195 SETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEPTEPEREGPPFPGHR 251
Score = 47.3 bits (112), Expect = 2e-05
Identities = 7/62 (11%), Positives = 16/62 (25%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
++ + E+ EE E E + + + E + +E
Sbjct: 157 PSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQS 216
Query: 658 KE 659
Sbjct: 217 PT 218
Score = 47.3 bits (112), Expect = 2e-05
Identities = 8/63 (12%), Positives = 14/63 (22%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E ++ + E+ EE E E E + +
Sbjct: 141 PSHPGPHEPAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTS 200
Query: 658 KEE 660
Sbjct: 201 SPP 203
Score = 46.9 bits (111), Expect = 2e-05
Identities = 8/62 (12%), Positives = 20/62 (32%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ E+ EE E E E + + + + +E E + ++
Sbjct: 168 QPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNT 227
Query: 659 EE 660
++
Sbjct: 228 QQ 229
Score = 46.9 bits (111), Expect = 2e-05
Identities = 9/63 (14%), Positives = 19/63 (30%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
++ + E+ EE E E E + E + +E E +
Sbjct: 159 PNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPT 218
Query: 658 KEE 660
++
Sbjct: 219 PQQ 221
Score = 46.9 bits (111), Expect = 2e-05
Identities = 9/62 (14%), Positives = 16/62 (25%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+ E+ EE E E E + + E + +E E +
Sbjct: 163 PSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQA 222
Query: 658 KE 659
Sbjct: 223 PS 224
Score = 46.9 bits (111), Expect = 3e-05
Identities = 7/62 (11%), Positives = 15/62 (24%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E ++ + E+ + E E E + + E
Sbjct: 149 PAPPESHNPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPP 208
Query: 659 EE 660
+E
Sbjct: 209 DE 210
Score = 46.5 bits (110), Expect = 3e-05
Identities = 9/63 (14%), Positives = 16/63 (25%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+ E+ EE E E E + + E + +E E +
Sbjct: 162 QPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQ 221
Query: 658 KEE 660
Sbjct: 222 APS 224
Score = 46.1 bits (109), Expect = 4e-05
Identities = 8/55 (14%), Positives = 18/55 (32%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E + + E + +E E + ++ ++ E E+E
Sbjct: 183 SEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVEHEDEP 237
Score = 45.7 bits (108), Expect = 5e-05
Identities = 9/62 (14%), Positives = 19/62 (30%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ EE E E E + + E + +E E + ++ + +
Sbjct: 173 DSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQSPTPQQAPSPNTQQAVE 232
Query: 659 EE 660
E
Sbjct: 233 HE 234
Score = 43.4 bits (102), Expect = 3e-04
Identities = 7/62 (11%), Positives = 17/62 (27%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++ + E+ EE E + E + + E + + G +
Sbjct: 156 NPSPNQQPSSFLQPSHEDSPEEPEPPTSEPEPDSPGPPQSETPTSSPPPQSPPDEPGEPQ 215
Query: 659 EE 660
Sbjct: 216 SP 217
Score = 41.9 bits (98), Expect = 0.001
Identities = 12/54 (22%), Positives = 18/54 (33%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E+ + E + E EE E+EE + E G +E S
Sbjct: 63 EQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAEELAS 116
Score = 38.4 bits (89), Expect = 0.010
Identities = 10/60 (16%), Positives = 16/60 (26%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ E+ + E + E E E+EE + E G E
Sbjct: 53 TSGPQVRAVAEQGHRQTESDTETAEESRHGEKEERGQGGPSGSGSESVGSPTPSPSGSAE 112
Score = 36.1 bits (83), Expect = 0.053
Identities = 14/74 (18%), Positives = 21/74 (28%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
Q RR + + E+ + E + E EE E+E
Sbjct: 26 HGGTREQAGRRRGTAARAAKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEKE 85
Query: 647 EEEEEEVRGGGKEE 660
E + G G E
Sbjct: 86 ERGQGGPSGSGSES 99
Score = 30.3 bits (68), Expect = 3.6
Identities = 14/69 (20%), Positives = 20/69 (28%), Gaps = 3/69 (4%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE---EE 651
G RE+ + Q E+ + E + E EE E+
Sbjct: 25 RHGGTREQAGRRRGTAARAAKPAPPAPTTSGPQVRAVAEQGHRQTESDTETAEESRHGEK 84
Query: 652 EVRGGGKEE 660
E RG G
Sbjct: 85 EERGQGGPS 93
>gnl|CDD|148051 pfam06213, CobT, Cobalamin biosynthesis protein CobT. This family
consists of several bacterial cobalamin biosynthesis
(CobT) proteins. CobT is involved in the transformation
of precorrin-3 into cobyrinic acid.
Length = 282
Score = 53.3 bits (128), Expect = 1e-07
Identities = 15/56 (26%), Positives = 32/56 (57%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
+E E + E+ E+E++ +E+E++++ +EEE + E+ + EE E E+
Sbjct: 214 DEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAA 269
Score = 52.9 bits (127), Expect = 2e-07
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E + E+ E+E++ +E+E++++ EEEE + E+ + EE E E E E
Sbjct: 217 ESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEA 271
Score = 52.9 bits (127), Expect = 2e-07
Identities = 15/55 (27%), Positives = 31/55 (56%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
G+ E + E+ E+E++ +E+E++++ E +E + E+ + EE E E E
Sbjct: 213 GDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEME 267
Score = 52.1 bits (125), Expect = 3e-07
Identities = 16/53 (30%), Positives = 30/53 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E +E E + E+ E+E++ +E+E+++ EEEE + E+ + EE E
Sbjct: 211 ELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMES 263
Score = 50.6 bits (121), Expect = 9e-07
Identities = 17/66 (25%), Positives = 35/66 (53%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++ + EE +E E + E+ E+E++ +E+ +++ EEEE + E+ + EE+
Sbjct: 202 MLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEM 261
Query: 654 RGGGKE 659
G E
Sbjct: 262 ESGEME 267
Score = 49.4 bits (118), Expect = 3e-06
Identities = 16/74 (21%), Positives = 36/74 (48%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+++ + EE +E E + E+ E+E++ +E +++++ EEEE + E+
Sbjct: 194 AFARVVRDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSED 253
Query: 647 EEEEEEVRGGGKEE 660
+ E G+ E
Sbjct: 254 SDASSEEMESGEME 267
Score = 48.3 bits (115), Expect = 6e-06
Identities = 14/60 (23%), Positives = 33/60 (55%), Gaps = 6/60 (10%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE------EEEEEEEEE 652
+ E+E++ +E+E++++ EEEE + + E+ + EE E E E ++ + ++
Sbjct: 223 DNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDDA 282
Score = 47.1 bits (112), Expect = 1e-05
Identities = 14/56 (25%), Positives = 27/56 (48%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + +E+E++++ EEEE + E+ EE E E E E ++ + +
Sbjct: 225 EDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSD 280
Score = 46.3 bits (110), Expect = 2e-05
Identities = 15/60 (25%), Positives = 32/60 (53%), Gaps = 6/60 (10%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE------EEEEEEEE 652
E E+E++ +E+E++++ EEEE + E+ + EE E E E ++ + ++
Sbjct: 222 EDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDD 281
Score = 46.0 bits (109), Expect = 3e-05
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E+E++ +E+E++++ EEEE E+ + EE E E E E +
Sbjct: 221 SEDNEDEDDPKEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASAD 274
Score = 42.9 bits (101), Expect = 3e-04
Identities = 11/52 (21%), Positives = 25/52 (48%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ E +++ EEEE + E+ + EE++ E E E ++ + ++
Sbjct: 231 KEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDDA 282
Score = 42.9 bits (101), Expect = 3e-04
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
Q R R+ + EE +E E + E+ E +++ +E+E++++ EEEE + E
Sbjct: 193 QAFARVVRDMLSSMDMAEELGDEPESADSEDNEDEDDPKEDEDDDQGEEEESGSSDSLSE 252
Score = 42.5 bits (100), Expect = 4e-04
Identities = 10/52 (19%), Positives = 24/52 (46%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ + ++++ EEEE + E+ + E E E E E ++ + ++
Sbjct: 231 KEDEDDDQGEEEESGSSDSLSEDSDASSEEMESGEMEAAEASADDTPDSDDA 282
>gnl|CDD|220413 pfam09805, Nop25, Nucleolar protein 12 (25kDa). Members of this
family of proteins are part of the yeast nuclear pore
complex-associated pre-60S ribosomal subunit. The family
functions as a highly conserved exonuclease that is
required for the 5'-end maturation of 5.8S and 25S
rRNAs, demonstrating that 5'-end processing also has a
redundant pathway. Nop25 binds late pre-60S ribosomes,
accompanying them from the nucleolus to the nuclear
periphery; and there is evidence for both physical and
functional links between late 60S subunit processing and
export.
Length = 134
Score = 50.0 bits (120), Expect = 2e-07
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 8/65 (12%)
Query: 596 RRGEREEEEEEE--------EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
R ER++E E++ + EEE ++EE+ E E+ E++E E E + EEE
Sbjct: 57 IREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEE 116
Query: 648 EEEEE 652
+E+
Sbjct: 117 YIDED 121
Score = 49.6 bits (119), Expect = 3e-07
Identities = 16/58 (27%), Positives = 31/58 (53%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+E ++ + + EEE ++EE+ E E+ E+ E++E E + EEE +E+
Sbjct: 64 ELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDED 121
Score = 48.9 bits (117), Expect = 5e-07
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
R EE ++E E++ +E +E + EEE +EE+ E E+ E+ E++E E E V
Sbjct: 54 RKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDY 113
Query: 657 GKEEISL 663
+E I
Sbjct: 114 EEEYIDE 120
Score = 48.1 bits (115), Expect = 1e-06
Identities = 18/56 (32%), Positives = 31/56 (55%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EEE ++EE+ E E+ E+ E++E E E + EEE +E++ + EE+
Sbjct: 77 KLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTVTVEEL 132
Score = 48.1 bits (115), Expect = 1e-06
Identities = 26/75 (34%), Positives = 44/75 (58%), Gaps = 10/75 (13%)
Query: 596 RRGEREEEEEEEEEEEEEEE-----EEEEEEEEEEVQE-----EEEEEEEEEEEEEEEEE 645
RR + +EE +E+E EE EE EE ++E E++++E + EEE ++EE+ E E+
Sbjct: 34 RRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETED 93
Query: 646 EEEEEEEVRGGGKEE 660
E+ E++ G E
Sbjct: 94 TEDVEDDEWEGFPEP 108
Score = 47.7 bits (114), Expect = 1e-06
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
R+ REE ++E E++ +E +E + EEE EE+ E E+ E+ E++E E E
Sbjct: 54 RKRIREERKQELEKQLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVT 111
Score = 46.6 bits (111), Expect = 3e-06
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
QL R E + EEE ++EE+ E E+ E+ E++ E E + EEE +E+
Sbjct: 68 QLKERKEALKLLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDED 121
Score = 42.7 bits (101), Expect = 7e-05
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
L+ +EE+ E E+ E+ E++E E E V + EEE +E++ + EE +
Sbjct: 78 LLEEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTVTVEELD 133
Score = 41.9 bits (99), Expect = 1e-04
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E ++EE+ E E+ E+ E++E E + EEE +E++ + EE +
Sbjct: 80 EEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTVTVEELD 133
Score = 40.8 bits (96), Expect = 3e-04
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E ++EE+ E E+ E+ E++E E E + EEE +E++ + EE +
Sbjct: 80 EEENDDEEDAETEDTEDVEDDEWEGFPEPTVTDYEEEYIDEDKYKTTVTVEELD 133
Score = 40.4 bits (95), Expect = 5e-04
Identities = 22/63 (34%), Positives = 41/63 (65%), Gaps = 6/63 (9%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEE-----EEEEEEVQEE-EEEEEEEEEEEEEEEEEEEE 649
R+ +R ++ +EE +E+E EE EE EE ++E++++ +E +E + EEE ++EE+
Sbjct: 30 RKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDA 89
Query: 650 EEE 652
E E
Sbjct: 90 ETE 92
Score = 38.8 bits (91), Expect = 0.002
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 17/78 (21%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEE-----EEVQEE------------EEEEEEEEEEEEE 642
R+++ ++ +EE +E+E EE EE EE ++E + EEE ++EE+
Sbjct: 30 RKQQRRKKAQEEAKEKEREERIEERKRIREERKQELEKQLKERKEALKLLEEENDDEEDA 89
Query: 643 EEEEEEEEEEVRGGGKEE 660
E E+ E+ E+ G E
Sbjct: 90 ETEDTEDVEDDEWEGFPE 107
>gnl|CDD|179712 PRK04019, rplP0, acidic ribosomal protein P0; Validated.
Length = 330
Score = 52.6 bits (127), Expect = 3e-07
Identities = 22/45 (48%), Positives = 28/45 (62%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
+++ +EE +E Q + EEEEEEEEEEEEEE EEE G
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPSEEEAAAG 324
Score = 50.6 bits (122), Expect = 1e-06
Identities = 23/69 (33%), Positives = 33/69 (47%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E ++ + + +++ +EE +E + EEEEEEEEEEEEEE
Sbjct: 258 ETADDILSKAVAQALALAAALADKDALDEELKEVLSAQAQAAAAEEEEEEEEEEEEEEPS 317
Query: 649 EEEEVRGGG 657
EEE G G
Sbjct: 318 EEEAAAGLG 326
Score = 33.3 bits (77), Expect = 0.42
Identities = 16/45 (35%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
+++ +EE++E + + EEEEEE EEEEE +EE +
Sbjct: 280 DKDALDEELKEVLSAQAQAAAAEEEEEE--EEEEEEEEPSEEEAA 322
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT
(nicotinate-mononucleotide:5, 6-dimethylbenzimidazole
phosphoribosyltransferase) [Coenzyme metabolism].
Length = 620
Score = 53.3 bits (128), Expect = 3e-07
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E EE E +E EE+E E + E +E E + E E+ E +E +E+ E
Sbjct: 242 DNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTET 297
Score = 52.2 bits (125), Expect = 7e-07
Identities = 19/55 (34%), Positives = 29/55 (52%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + E+ E EE E +E EE+E E + E EE E + E E+ E +E +E
Sbjct: 239 DQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDE 293
Score = 50.2 bits (120), Expect = 3e-06
Identities = 20/60 (33%), Positives = 30/60 (50%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E+ E EE E +E EE+E E + + EE E + E E+ E +E +E+ E G
Sbjct: 243 NNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGEDA 302
Score = 48.7 bits (116), Expect = 8e-06
Identities = 18/56 (32%), Positives = 27/56 (48%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E EE E +E EE+E E + EE E + E E+ E +E +E+ E
Sbjct: 242 DNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTET 297
Score = 48.7 bits (116), Expect = 9e-06
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ EE+ +EE+ ++++ + E+ E +EE E +E EE+E E + E EE E+
Sbjct: 225 DGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDA 279
Score = 48.7 bits (116), Expect = 9e-06
Identities = 18/55 (32%), Positives = 29/55 (52%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
G+ ++ + E+ E EE E +E EE+ E + E EE E + E E+ E +E
Sbjct: 236 GDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDE 290
Score = 48.3 bits (115), Expect = 1e-05
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
G+ EE+ +EE+ ++++ + E+ E +E E +E EE+E E + E EE E
Sbjct: 223 GDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEM 277
Score = 48.3 bits (115), Expect = 1e-05
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E +EE+ ++++ + E+ E EE E +E EE+E E + E EE E + E
Sbjct: 229 EDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAE 281
Score = 47.9 bits (114), Expect = 1e-05
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
G E+ +EE+ ++++ + E+ E EE + +E EE+E E + E EE E +
Sbjct: 226 GIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMD 278
Score = 47.5 bits (113), Expect = 2e-05
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ EE+ +EE+ ++++ + E+ E + E +E EE+E E + E EE E +
Sbjct: 224 DDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMD 278
Score = 47.5 bits (113), Expect = 2e-05
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + +EE+ ++++ + E+ E EE +E EE+E E + E EE E + E
Sbjct: 228 EEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEGEMDAAE 281
Score = 47.1 bits (112), Expect = 3e-05
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EE ++ EE+ +EE+ ++++ E+ E EE E +E EE+E E G G+E
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEE 274
Score = 46.0 bits (109), Expect = 6e-05
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R E E +E EE+E E + E EE E + + E+ E +E +E+ E E
Sbjct: 251 REESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGE 300
Score = 45.2 bits (107), Expect = 9e-05
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E E +E EE+E E + E EE E + E E+ E +E +E+ E E
Sbjct: 251 REESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGE 300
Score = 44.8 bits (106), Expect = 1e-04
Identities = 19/51 (37%), Positives = 26/51 (50%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
G E E +E EE+E E + E EE E E E+ E +E +E+ E E
Sbjct: 250 GREESEGSDESEEDEAEATDGEGEEGEMDAAEASEDSESDESDEDTETPGE 300
Score = 44.8 bits (106), Expect = 1e-04
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
EE ++ EE+ +EE+ ++++ + E EE E +E EE+E E + E G
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEEG 275
Score = 43.7 bits (103), Expect = 3e-04
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E ++ EE+ +EE+ ++++ + E+ + EE E +E EE+E E + E E
Sbjct: 219 AEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGE 273
Score = 43.3 bits (102), Expect = 3e-04
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE ++ EE+ +EE+ +++ + E+ E EE E +E EE+E E G EE
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEATDGEGEE 274
Score = 39.1 bits (91), Expect = 0.008
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
Q R R+ + EE ++ EE+ +EE+ +++ + E+ E EE E +E EE
Sbjct: 203 QAFARVVRDMLGSMDMAEETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEE 262
Score = 33.3 bits (76), Expect = 0.50
Identities = 11/48 (22%), Positives = 24/48 (50%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
EE ++ E +EE+ ++++ + E+ E EE E +E+ +
Sbjct: 220 EETGDDGIEEDADEEDGDDDQPDNNEDSEAGREESEGSDESEEDEAEA 267
Score = 30.2 bits (68), Expect = 4.8
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 19/76 (25%)
Query: 599 EREEEEEEEE-----EEEEEEEEEEEEEE--------------EEEVQEEEEEEEEEEEE 639
+ E EE E + E+ E +E +E+ E EEV + E +E
Sbjct: 269 DGEGEEGEMDAAEASEDSESDESDEDTETPGEDARPATPFTELMEEVDYKVFTREFDEIV 328
Query: 640 EEEEEEEEEEEEEVRG 655
EE +E E + +R
Sbjct: 329 LAEELCDEAELDRLRA 344
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha
subunit (TFIIF-alpha). Transcription initiation factor
IIF, alpha subunit (TFIIF-alpha) or RNA polymerase
II-associating protein 74 (RAP74) is the large subunit
of transcription factor IIF (TFIIF), which is essential
for accurate initiation and stimulates elongation by RNA
polymerase II.
Length = 528
Score = 53.0 bits (127), Expect = 3e-07
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+E EE+ + + EE E+++ E + E E++E+ EE EEE+ EE G K+
Sbjct: 279 DEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKG 338
Score = 51.9 bits (124), Expect = 8e-07
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++E EE+ + + EE E+ E + E E++E+ EE EEE+ E GG ++
Sbjct: 278 DDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKK 337
Score = 51.5 bits (123), Expect = 9e-07
Identities = 19/55 (34%), Positives = 30/55 (54%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
G+ E EE+ + + EE E++ E + E E++E+ EE EEE+ EEE
Sbjct: 277 GDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEE 331
Score = 51.5 bits (123), Expect = 1e-06
Identities = 15/65 (23%), Positives = 34/65 (52%), Gaps = 5/65 (7%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV-----RG 655
+ + EE E++ E + E++++E+ EE EEE+ EEE ++ +++ +
Sbjct: 289 DSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKK 348
Query: 656 GGKEE 660
G ++
Sbjct: 349 NGLDK 353
Score = 49.6 bits (118), Expect = 4e-06
Identities = 20/60 (33%), Positives = 32/60 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
REE+ + + EE E++ E+ + E E++E+ EE EEE+ EEE + G K
Sbjct: 281 GREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKK 340
Score = 48.8 bits (116), Expect = 8e-06
Identities = 20/75 (26%), Positives = 37/75 (49%), Gaps = 10/75 (13%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEE----------EEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+RG ++ +E + ++ ++E EE + EE E + E + E E++E+ E
Sbjct: 262 KRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDEDSE 321
Query: 646 EEEEEEEVRGGGKEE 660
E EEE+ GG +
Sbjct: 322 ESEEEKNEEEGGLSK 336
Score = 43.0 bits (101), Expect = 4e-04
Identities = 13/65 (20%), Positives = 31/65 (47%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++G+R +++ +E + ++ ++E EE+ + EE E++ E + E E
Sbjct: 259 KKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQDE 318
Query: 656 GGKEE 660
+E
Sbjct: 319 DSEES 323
Score = 40.7 bits (95), Expect = 0.002
Identities = 13/72 (18%), Positives = 35/72 (48%), Gaps = 6/72 (8%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
EI + I + E EE EEE+ EEE ++ ++ ++ ++ ++++ +
Sbjct: 305 SPEIPAK------PEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDS 358
Query: 640 EEEEEEEEEEEE 651
++ ++ + + E
Sbjct: 359 GDDSDDSDIDGE 370
Score = 40.3 bits (94), Expect = 0.003
Identities = 12/52 (23%), Positives = 31/52 (59%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + E E++E+ EE EEE+ EEE ++ ++ ++ + ++ ++++ +
Sbjct: 307 EIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDS 358
Score = 39.2 bits (91), Expect = 0.007
Identities = 12/54 (22%), Positives = 33/54 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + E E++E+ EE EEE+ EEE + ++ ++ ++ + ++ ++++ + +
Sbjct: 307 EIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGD 360
Score = 38.4 bits (89), Expect = 0.012
Identities = 11/56 (19%), Positives = 32/56 (57%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ E E++E+ EE EEE+ EEE + ++ ++ + ++ ++++ + ++ +
Sbjct: 309 PAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDD 364
Score = 37.6 bits (87), Expect = 0.020
Identities = 12/60 (20%), Positives = 35/60 (58%), Gaps = 4/60 (6%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEE----VQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E E++E+ EE EEE+ EEE ++ + ++ ++ ++++ + ++ ++ + + E
Sbjct: 311 KPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLKGKKNGLDKDDSDSGDDSDDSDIDGE 370
Score = 37.6 bits (87), Expect = 0.021
Identities = 15/75 (20%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
SD G+ E + + E E++E+ EE EEE+ EEE ++ ++ ++ +
Sbjct: 287 ISDSSASGNDPEERE-DKLSPEIPAKPEIEQDEDSEESEEEKNEEEGGLSKKGKKLKKLK 345
Query: 637 EEEEEEEEEEEEEEE 651
++ ++++ + +
Sbjct: 346 GKKNGLDKDDSDSGD 360
Score = 36.9 bits (85), Expect = 0.032
Identities = 14/78 (17%), Positives = 31/78 (39%), Gaps = 16/78 (20%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE---------------- 642
+++ + +++ +E + ++ ++E EE + + EE E
Sbjct: 258 DKKGKRGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEIEQD 317
Query: 643 EEEEEEEEEEVRGGGKEE 660
E+ EE EEE+ G
Sbjct: 318 EDSEESEEEKNEEEGGLS 335
Score = 31.5 bits (71), Expect = 1.7
Identities = 11/49 (22%), Positives = 31/49 (63%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+E+EE E E+ ++ ++++ E ++E++ +E ++ E+ +EE+ +
Sbjct: 195 DEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKK 243
Score = 31.1 bits (70), Expect = 2.3
Identities = 11/60 (18%), Positives = 32/60 (53%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ +++ + +E+EE E E+ ++ ++ E ++E++ +E ++ E+ +EE
Sbjct: 180 LMMMKAAKNGPAAFGDEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEE 239
Score = 30.7 bits (69), Expect = 2.7
Identities = 16/112 (14%), Positives = 40/112 (35%), Gaps = 26/112 (23%)
Query: 569 RPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEE--------------EEEEEEEEE 614
+K+ DE + +G + +EE + +++++ +
Sbjct: 210 GKDLKIKDLEGDDEDDGDESD-------KGGEDGDEEKSKKKKKKLAKNKKKLDDDKKGK 262
Query: 615 EEEEEEEEEEEVQEEEEEEEEE-----EEEEEEEEEEEEEEEEVRGGGKEEI 661
+++ +E + + ++E EE + EE E++ K EI
Sbjct: 263 RGGDDDADEYDSDDGDDEGREEDYISDSSASGNDPEEREDKLSPEIPAKPEI 314
Score = 30.7 bits (69), Expect = 3.3
Identities = 12/60 (20%), Positives = 36/60 (60%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+E+EE E E+ ++ + ++ E +E++ +E ++ E+ +EE+ +++++ K++
Sbjct: 195 DEDEETEGEKGGGGRGKDLKIKDLEGDDEDDGDESDKGGEDGDEEKSKKKKKKLAKNKKK 254
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein. CDC45 is an essential gene
required for initiation of DNA replication in S.
cerevisiae, forming a complex with MCM5/CDC46.
Homologues of CDC45 have been identified in human, mouse
and smut fungus among others.
Length = 583
Score = 53.1 bits (128), Expect = 4e-07
Identities = 15/74 (20%), Positives = 44/74 (59%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + + G+ EEE ++E ++ + EE+++++E +EE+EE + E++E+++++
Sbjct: 93 FGSDQVVIFDDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDD 152
Query: 647 EEEEEEVRGGGKEE 660
+++++ E
Sbjct: 153 DDDDDIATRERSLE 166
Score = 45.0 bits (107), Expect = 1e-04
Identities = 19/84 (22%), Positives = 43/84 (51%)
Query: 583 IGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
IE +Q R + + EE+++++EE +EE+EE + +E++++++++++
Sbjct: 101 FDDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDDDDDIAT 160
Query: 643 EEEEEEEEEEVRGGGKEEISLHFY 666
E E R ++ L FY
Sbjct: 161 RERSLERRRRRREWEEKRAELEFY 184
Score = 45.0 bits (107), Expect = 1e-04
Identities = 19/84 (22%), Positives = 41/84 (48%), Gaps = 2/84 (2%)
Query: 571 SIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
+ ++ D D + E R E+++++EE +EE+EE + E++E++ +++
Sbjct: 97 QVVIF--DDGDIEEELQDEPRYDDAYRDLEEDDDDDEESDEEDEESSKSEDDEDDDDDDD 154
Query: 631 EEEEEEEEEEEEEEEEEEEEEEVR 654
+++ E E E EE R
Sbjct: 155 DDDIATRERSLERRRRRREWEEKR 178
>gnl|CDD|221333 pfam11942, Spt5_N, Spt5 transcription elongation factor, acidic
N-terminal. This is the very acidic N-terminal region
of the early transcription elongation factor Spt5. The
Spt5-Spt4 complex regulates early transcription
elongation by RNA polymerase II and has an imputed role
in pre-mRNA processing via its physical association with
mRNA capping enzymes. The actual function of this
N-terminal domain is not known although it is
dispensable for binding to Spt4.
Length = 92
Score = 47.8 bits (114), Expect = 4e-07
Identities = 26/62 (41%), Positives = 38/62 (61%), Gaps = 6/62 (9%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE------EEEEEEEEEEEEEEEEEEEE 652
E E ++EEEEEEEEE++ E+ +E+E + E E E + E+EEEE+ EE E
Sbjct: 5 EAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEEEDAEELAEY 64
Query: 653 VR 654
+R
Sbjct: 65 LR 66
Score = 47.4 bits (113), Expect = 7e-07
Identities = 21/56 (37%), Positives = 34/56 (60%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ EEEEEEEE++ E+ +E+E +E E +++ + E+EEEE+ EE E
Sbjct: 9 DDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEEEDAEELAEY 64
Score = 46.7 bits (111), Expect = 1e-06
Identities = 20/60 (33%), Positives = 34/60 (56%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
+ E E ++EEEEEEEEE++ E+ E+E +E E E++ + E+ EE++
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEEEDAEELA 62
Score = 45.1 bits (107), Expect = 4e-06
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
+ E E ++EEEEEEEEE++ E+ ++E +E E E++ + E+E
Sbjct: 3 DTEAEVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRHRRLDRRREKEEEED 57
Score = 36.3 bits (84), Expect = 0.006
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
E ++EEEEEEEEE++ E+ +E+E + E+ H
Sbjct: 7 EVDDEEEEEEEEEDDLEDLSDEDEFIDEAEAEDDRRH 43
Score = 29.3 bits (66), Expect = 1.8
Identities = 17/59 (28%), Positives = 29/59 (49%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
SD+DE + RR +R E+EEEE+ EE E + +E + ++ + +E
Sbjct: 26 SDEDEFIDEAEAEDDRRHRRLDRRREKEEEEDAEELAEYLRKRYGDEADADADDSDSDE 84
>gnl|CDD|183610 PRK12585, PRK12585, putative monovalent cation/H+ antiporter
subunit G; Reviewed.
Length = 197
Score = 50.5 bits (120), Expect = 4e-07
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R EREE EE E E EE+ +E E++EE+ +E EE+ EE+ ++ E E E++E E
Sbjct: 132 RQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESE 187
Score = 50.1 bits (119), Expect = 6e-07
Identities = 28/77 (36%), Positives = 49/77 (63%), Gaps = 3/77 (3%)
Query: 580 QDEIGSPRIENIIQ---LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+D++ S + ++I + LI R E+ E+ +E EE EE E E EE+ + +E++EE+E E
Sbjct: 104 RDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQERE 163
Query: 637 EEEEEEEEEEEEEEEEV 653
EE+ EE+ ++ E E+
Sbjct: 164 REEQTIEEQSDDSEHEI 180
Score = 47.4 bits (112), Expect = 6e-06
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
I + +E EE EE E E EE+ +E E++E QE E EE+ EE+ ++ E E E++E
Sbjct: 128 IEKARQEREELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDE 185
Score = 46.6 bits (110), Expect = 1e-05
Identities = 21/53 (39%), Positives = 36/53 (67%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
ER EE+ +E E++EE+E E EE+ EE ++ E E E++E E E ++++ E+
Sbjct: 145 ERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 45.1 bits (106), Expect = 3e-05
Identities = 25/73 (34%), Positives = 44/73 (60%), Gaps = 1/73 (1%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
Q++I R E +L R E E EE+ +E E++EE+E E EE+ ++ ++ E E E+
Sbjct: 125 QEQIEKARQERE-ELEERMEWERREEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQ 183
Query: 640 EEEEEEEEEEEEE 652
+E E E ++++ E
Sbjct: 184 DESETESDDDKTE 196
Score = 42.4 bits (99), Expect = 2e-04
Identities = 21/66 (31%), Positives = 42/66 (63%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
RI + ++ +++ + ++++ +E+ E+ +E EE EE E E EE+ +E E++EE+E
Sbjct: 102 RIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQE 161
Query: 647 EEEEEE 652
E EE+
Sbjct: 162 REREEQ 167
Score = 38.1 bits (88), Expect = 0.007
Identities = 20/70 (28%), Positives = 41/70 (58%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+ G P I +R ++++ ++++ +E+ E+ +E EE++E E E EE+ +E
Sbjct: 94 DTGVPLAIRIRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDE 153
Query: 642 EEEEEEEEEE 651
E++EE+E E
Sbjct: 154 REDQEEQERE 163
Score = 35.0 bits (80), Expect = 0.063
Identities = 16/44 (36%), Positives = 28/44 (63%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
R ++EE+E E EE+ EE+ ++ E E E E E E ++++ E+
Sbjct: 154 REDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 32.3 bits (73), Expect = 0.45
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
IR R ++++ ++++ +E+ E+ + +EE EE E E EE+ +E E++EE+ R
Sbjct: 103 IRDQLRSVKKDDIKKKKSLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQER 162
Score = 32.3 bits (73), Expect = 0.54
Identities = 14/44 (31%), Positives = 27/44 (61%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
R + E+E E EE+ EE+ ++ E E E+ + E E ++++ E+
Sbjct: 154 REDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
Score = 31.6 bits (71), Expect = 0.80
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+E+ E+ QE EE EE E E EE+ +E E++E + +EE
Sbjct: 125 QEQIEKARQEREELEERMEWERREEKIDEREDQEEQEREREE 166
Score = 30.4 bits (68), Expect = 2.0
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
R E I + + E+E E EE+ EE+ ++ E E E++E + E ++++ E+
Sbjct: 147 REEKIDEREDQEEQEREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK 197
>gnl|CDD|114603 pfam05887, Trypan_PARP, Procyclic acidic repetitive protein (PARP).
This family consists of several Trypanosoma brucei
procyclic acidic repetitive protein (PARP) like
sequences. The procyclic acidic repetitive protein
(parp) genes of Trypanosoma brucei encode a small family
of abundant surface proteins whose expression is
restricted to the procyclic form of the parasite. They
are found at two unlinked loci, parpA and parpB;
transcription of both loci is developmentally regulated.
Length = 145
Score = 49.6 bits (117), Expect = 5e-07
Identities = 31/53 (58%), Positives = 35/53 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ ++E EEEEE E EEE EEE E EEE +EE E EE EEE E E E E E E
Sbjct: 59 DPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPE 111
Score = 47.6 bits (112), Expect = 2e-06
Identities = 33/56 (58%), Positives = 34/56 (60%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E EEEEE E EEE EEE E EEE EEE + EE EEE E E E E E E E E
Sbjct: 60 PDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPE 115
Score = 47.3 bits (111), Expect = 3e-06
Identities = 32/55 (58%), Positives = 34/55 (61%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
G ++E EEEEE E EEE EEE E EE EEE E EE EEE E E E E E E
Sbjct: 57 GTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPE 111
Score = 46.9 bits (110), Expect = 3e-06
Identities = 34/69 (49%), Positives = 38/69 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E EEE EEE E EEE EEE E EE EEE E E E E E E E E E E E
Sbjct: 68 EEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPEPGAATL 127
Query: 659 EEISLHFYV 667
+ ++L F +
Sbjct: 128 KSVALPFAI 136
Score = 45.3 bits (106), Expect = 1e-05
Identities = 32/55 (58%), Positives = 32/55 (58%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EEEE E EEE EEE E EEE EEE EE EEE E E E E E E E E E
Sbjct: 63 EPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPE 117
Score = 45.0 bits (105), Expect = 2e-05
Identities = 34/73 (46%), Positives = 38/73 (52%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ E G+ + + EEEEE E EEE EEE E EEE EE E EE EEE E
Sbjct: 43 KGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEP 102
Query: 640 EEEEEEEEEEEEE 652
E E E E E E E
Sbjct: 103 EPEPEPEPEPEPE 115
Score = 44.6 bits (104), Expect = 2e-05
Identities = 31/68 (45%), Positives = 38/68 (55%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
G + E ++ + ++E EEEEE E EEE EEE E +EE EEE E EE EEE
Sbjct: 40 GKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEE 99
Query: 644 EEEEEEEE 651
E E E E
Sbjct: 100 PEPEPEPE 107
Score = 40.3 bits (93), Expect = 6e-04
Identities = 28/51 (54%), Positives = 28/51 (54%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EE EEE E EEE EEE E EE EE E E E E E E E E E E E
Sbjct: 71 EPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPEPEPEPEPEPEPEPE 121
Score = 36.9 bits (84), Expect = 0.010
Identities = 25/55 (45%), Positives = 32/55 (58%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++ + ++E EEEEE E +E EEE E EEE EEE E EE EEE + E
Sbjct: 53 DDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEETGEEEPEPEPEPE 107
Score = 36.9 bits (84), Expect = 0.010
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + G+ + E+ + ++ + ++E EEE + E EEE EEE E EEE EEE E EE
Sbjct: 36 ITKGGKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEE 94
Score = 35.7 bits (81), Expect = 0.025
Identities = 24/61 (39%), Positives = 35/61 (57%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
I +G + + E+ + ++ + ++E EE +E E EEE EEE E EEE EEE E E
Sbjct: 36 ITKGGKGKGEKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEET 95
Query: 655 G 655
G
Sbjct: 96 G 96
Score = 28.8 bits (63), Expect = 5.1
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E+ + ++ + +E EEEEE E EEE EEE E EEE EE
Sbjct: 45 EKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEE 94
Score = 28.0 bits (61), Expect = 9.7
Identities = 20/50 (40%), Positives = 26/50 (52%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E+ + ++ + E EEEEE E EEE EEE E EEE E +E
Sbjct: 45 EKGTKVGADDTNGTDPDDEPEEEEEPEPEEEGEEEPEPEEEGEEEPEPEE 94
>gnl|CDD|185603 PTZ00415, PTZ00415, transmission-blocking target antigen s230;
Provisional.
Length = 2849
Score = 53.1 bits (127), Expect = 5e-07
Identities = 21/50 (42%), Positives = 41/50 (82%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++E+E+E++++EE++EEEEEEEEE++ ++E+EE+E E+ E+ E ++
Sbjct: 156 DDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDK 205
Score = 52.7 bits (126), Expect = 6e-07
Identities = 18/47 (38%), Positives = 35/47 (74%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE+ + + +++E+E+E++++EE++EEEEEEEEE++G E+
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDED 187
Score = 51.6 bits (123), Expect = 1e-06
Identities = 27/73 (36%), Positives = 47/73 (64%), Gaps = 2/73 (2%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ EIG ++ II RR EE+ + ++++E+E+E++ EE++EEEEEEEE
Sbjct: 121 KAEIGD--LDMIIIKRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEE 178
Query: 640 EEEEEEEEEEEEE 652
E + ++E+EE+E
Sbjct: 179 EIKGFDDEDEEDE 191
Score = 51.6 bits (123), Expect = 2e-06
Identities = 26/70 (37%), Positives = 46/70 (65%), Gaps = 4/70 (5%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+E SPR +I + E+E+E++++EE++EEEEEEEEE + +E+EE+E E+
Sbjct: 142 EEDMSPRDNFVID----DDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFT 197
Query: 641 EEEEEEEEEE 650
E+ E ++ +
Sbjct: 198 YEKSEVDKTD 207
Score = 49.7 bits (118), Expect = 6e-06
Identities = 23/77 (29%), Positives = 46/77 (59%)
Query: 583 IGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
G I ++ +I + R EE+ + ++++E+E+ +++EE++EEEEEEEE
Sbjct: 119 HGKAEIGDLDMIIIKRRRARHLAEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEE 178
Query: 643 EEEEEEEEEEVRGGGKE 659
E + ++E+E GG++
Sbjct: 179 EIKGFDDEDEEDEGGED 195
Score = 48.1 bits (114), Expect = 2e-05
Identities = 20/52 (38%), Positives = 41/52 (78%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++++E+E+E++++EE++EEEEEEEE + ++E+EE+E E+ E+ E ++
Sbjct: 154 DDDDEDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDK 205
Score = 42.3 bits (99), Expect = 0.001
Identities = 21/63 (33%), Positives = 43/63 (68%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E+E++++EE++EEEEEEEEE + + ++EE+E E+ E+ E ++ + + + G
Sbjct: 158 EDEDEDDDDEEDDEEEEEEEEEIKGFDDEDEEDEGGEDFTYEKSEVDKTDCFKFIEAGAG 217
Query: 659 EEI 661
+++
Sbjct: 218 DDV 220
Score = 34.3 bits (78), Expect = 0.31
Identities = 11/40 (27%), Positives = 27/40 (67%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EE++ + ++++E+E+E++++EE++E +EEI
Sbjct: 141 AEEDMSPRDNFVIDDDDEDEDEDDDDEEDDEEEEEEEEEI 180
>gnl|CDD|222792 PHA00435, PHA00435, capsid assembly protein.
Length = 306
Score = 51.4 bits (123), Expect = 6e-07
Identities = 22/54 (40%), Positives = 30/54 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E ++ + E++E E + E+ EEEE EE EE+EEEE EEE EE
Sbjct: 48 AEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEE 101
Score = 51.4 bits (123), Expect = 7e-07
Identities = 28/68 (41%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEV----QEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E E ++ + E++E EV EEEE EE EE+EEEE EEE EE E
Sbjct: 46 ELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPL 105
Query: 655 GGGKEEIS 662
G EE++
Sbjct: 106 GDTPEELT 113
Score = 47.5 bits (113), Expect = 1e-05
Identities = 23/60 (38%), Positives = 32/60 (53%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
I+L ++ + E++E E E+ +EEE EE EE+EEEE EEE EE E
Sbjct: 45 IELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEP 104
Score = 46.4 bits (110), Expect = 2e-05
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 589 ENIIQL---IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+N++ L R G+ E E E ++ + E++E + E E+ EEEE EE E
Sbjct: 29 QNMLALDVAARDGDDAIELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGE 88
Query: 646 EEEEEEEVRGGGKEEI 661
E+EEEE + E
Sbjct: 89 EDEEEEGEEESEEFEP 104
Score = 46.4 bits (110), Expect = 3e-05
Identities = 28/56 (50%), Positives = 33/56 (58%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+R E EEEE EE EE+EEEE EEE EE E + EE E E+ EE EE +
Sbjct: 73 VRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEEGFQA 128
Score = 44.4 bits (105), Expect = 1e-04
Identities = 23/48 (47%), Positives = 28/48 (58%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
GE +E E E+ EEEE EE EE+E +E EEE EE E + EE
Sbjct: 64 GEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEE 111
Score = 43.7 bits (103), Expect = 2e-04
Identities = 26/54 (48%), Positives = 33/54 (61%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+ EEEE EE EE+EEEE EEE EE + + EE E E+ EE EE + +
Sbjct: 77 EDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEEGFQAMV 130
Score = 43.3 bits (102), Expect = 2e-04
Identities = 28/55 (50%), Positives = 33/55 (60%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
R E E+ EEEE EE EE+EEEE EEE +E E + EE E E+ EE EE
Sbjct: 70 RIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEE 124
Score = 42.9 bits (101), Expect = 3e-04
Identities = 27/55 (49%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE--EEEEEEEEEEE 652
R E E+ EEEE EE EE+EEEE +E EE E + EE E E+ EE EE
Sbjct: 70 RIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEE 124
Score = 42.1 bits (99), Expect = 5e-04
Identities = 21/49 (42%), Positives = 27/49 (55%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++E E E+ EEEE EE EE+ +EE EEE EE E + EE
Sbjct: 63 FGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEE 111
Score = 42.1 bits (99), Expect = 7e-04
Identities = 30/63 (47%), Positives = 34/63 (53%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
GE EE EE EE+EEEE EEE EE E EE E E+ EE EE + E+ V G
Sbjct: 79 GEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEEGFQAMVEQAVERGL 138
Query: 658 KEE 660
E
Sbjct: 139 SAE 141
Score = 41.7 bits (98), Expect = 7e-04
Identities = 29/64 (45%), Positives = 34/64 (53%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E EE EE+EEEE EEE EE E + EE E E+ EE EE + E+ RG
Sbjct: 80 EEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHEEGFQAMVEQAVERGLS 139
Query: 658 KEEI 661
E I
Sbjct: 140 AETI 143
Score = 39.0 bits (91), Expect = 0.005
Identities = 26/55 (47%), Positives = 31/55 (56%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
G E E+ EEEE EE EE+EEEE E + EE E + EE E E+ EE E
Sbjct: 69 GRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEHE 123
Score = 35.2 bits (81), Expect = 0.084
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
E E E ++ + E++E E E+ EEEE EE EE EE S F
Sbjct: 46 ELAEPETSDDPYGNPDPFGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEF 102
Score = 32.1 bits (73), Expect = 0.76
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEE-EEEEEEEEEVQEEEEEEEEE 636
+D+ G + E EE+EEEE EEE EE E + EE+ E E+ EE
Sbjct: 63 FGEDDEGRIEVRISEDGEEEEVEEGEEDEEEEGEEESEEFEPLGDTPEELTEASEQLEEH 122
Query: 637 EEEEEE 642
EE +
Sbjct: 123 EEGFQA 128
>gnl|CDD|217049 pfam02459, Adeno_terminal, Adenoviral DNA terminal protein. This
protein is covalently attached to the terminii of
replicating DNA in vivo.
Length = 548
Score = 52.0 bits (125), Expect = 7e-07
Identities = 28/46 (60%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
L RR R E EEEEEEEEE EEEEE EEEEEE EEE
Sbjct: 290 LRRRRRRRPPPSPPEPEEEEEEEEEVPEEEEE--EEEEEERTFEEE 333
Score = 48.9 bits (117), Expect = 6e-06
Identities = 24/36 (66%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEE-EEEVR 654
E +EEEEEEE EEEEEEEEEEE EEEVR
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEEVR 335
Score = 46.6 bits (111), Expect = 3e-05
Identities = 21/37 (56%), Positives = 23/37 (62%)
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E EEEEEEEEE EEEEEEEEE +EE+
Sbjct: 298 PPPSPPEPEEEEEEEEEVPEEEEEEEEEEERTFEEEV 334
Score = 45.0 bits (107), Expect = 9e-05
Identities = 37/102 (36%), Positives = 41/102 (40%), Gaps = 23/102 (22%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEV----QEEEEEEEEEEEEEEEEEE--------- 645
E EEEEEE EEEEEEEEEEE EEEV E EEE E
Sbjct: 307 EEEEEEEEVPEEEEEEEEEEERTFEEEVRATVAEAIRLLEEELTVSARRHEFFNFAVDFY 366
Query: 646 ----EEEEEEEVRGGGKEEISLHFYVLYVLSKGKIAG-LFYL 682
E+ + E L +V+Y IA L YL
Sbjct: 367 ELLQRLEDLGRI-----TESFLRRWVMYFFIAEHIASTLNYL 403
Score = 33.1 bits (76), Expect = 0.61
Identities = 15/31 (48%), Positives = 17/31 (54%)
Query: 633 EEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
E EEEEEEEEE EEE +EE +
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTF 330
Score = 30.8 bits (70), Expect = 2.5
Identities = 14/31 (45%), Positives = 15/31 (48%)
Query: 635 EEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
E EEEEEEEEE E +EE F
Sbjct: 300 PSPPEPEEEEEEEEEVPEEEEEEEEEEERTF 330
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains
separated by a hinge in the middle. The eukaryotic SMC
proteins form two kind of heterodimers: the SMC1/SMC3
and the SMC2/SMC4 types. These heterodimers constitute
an essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 52.3 bits (125), Expect = 7e-07
Identities = 26/89 (29%), Positives = 43/89 (48%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ ++E+ + E + E + E+EE+ +EEE EE E +EE + E+ EEE
Sbjct: 797 LKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELKEEQKLEKLAEEE 856
Query: 636 EEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
E EEE +EE +E + + E
Sbjct: 857 LERLEEEITKEELLQELLLKEEELEEQKL 885
Score = 50.4 bits (120), Expect = 3e-06
Identities = 24/81 (29%), Positives = 38/81 (46%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + + E+ + +EEE EEE +EE E E ++ E+EE+ +EEE EE
Sbjct: 781 EEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELA 840
Query: 647 EEEEEEVRGGGKEEISLHFYV 667
E +EE + E L
Sbjct: 841 LELKEEQKLEKLAEEELERLE 861
Score = 50.4 bits (120), Expect = 3e-06
Identities = 26/75 (34%), Positives = 44/75 (58%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EN++ L EE + +E +E+EE E ++E +EEE + +E +EEE+E++
Sbjct: 225 ENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKL 284
Query: 649 EEEEVRGGGKEEISL 663
+EEE++ KEE L
Sbjct: 285 QEEELKLLAKEEEEL 299
Score = 50.0 bits (119), Expect = 4e-06
Identities = 30/102 (29%), Positives = 53/102 (51%)
Query: 563 NKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE 622
+K+ ++ ++E R++ + + E +E+E EEEE+ E+ + EEE
Sbjct: 733 DKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEE 792
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
+EE + +EEE EEE +EE E EEE++ +E+I
Sbjct: 793 KEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEE 834
Score = 49.6 bits (118), Expect = 5e-06
Identities = 27/77 (35%), Positives = 40/77 (51%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E + + EE+EE+ + +EEE EEE +EE EEE+ E+EE+ +EEE
Sbjct: 777 LAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEEL 836
Query: 647 EEEEEEVRGGGKEEISL 663
EE E++ K E
Sbjct: 837 EELALELKEEQKLEKLA 853
Score = 48.8 bits (116), Expect = 8e-06
Identities = 24/66 (36%), Positives = 38/66 (57%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+L E+ E+ + EEE+EE+ + +EEE E + +EE E EEE+ E+EE
Sbjct: 770 LSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEE 829
Query: 647 EEEEEE 652
+ +EEE
Sbjct: 830 KIKEEE 835
Score = 48.8 bits (116), Expect = 9e-06
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E + + + + EEE+EE+ + +EEE EEE + + E EEE+ E+EE+ +EE
Sbjct: 775 KELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEE 834
Query: 648 EEEEE 652
E EE
Sbjct: 835 ELEEL 839
Score = 48.8 bits (116), Expect = 9e-06
Identities = 28/107 (26%), Positives = 43/107 (40%), Gaps = 7/107 (6%)
Query: 564 KLKTIRPSIKVWKTSDQDEI-----GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEE 618
K K + ++ D RI ++ + E E EE EE +E+E+EE+
Sbjct: 895 KEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEED 954
Query: 619 --EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EEEEE + +EE E EE+EE ++ L
Sbjct: 955 NKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERL 1001
Score = 48.8 bits (116), Expect = 1e-05
Identities = 28/89 (31%), Positives = 46/89 (51%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
++++ + E + +E+E EEEE+ E+ + EEE+EE+ + QEEE EEE
Sbjct: 751 EEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEE 810
Query: 638 EEEEEEEEEEEEEEEVRGGGKEEISLHFY 666
+EE E EEE+ + +E L
Sbjct: 811 LKEEAELLEEEQLLIEQEEKIKEEELEEL 839
Score = 48.4 bits (115), Expect = 1e-05
Identities = 28/93 (30%), Positives = 44/93 (47%)
Query: 561 NTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEE 620
K + + + K+ + E + E E+EE+ + +EEE EEE
Sbjct: 752 EEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEEL 811
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+EE E+ EEE+ E+EE+ +EEE EE E
Sbjct: 812 KEEAELLEEEQLLIEQEEKIKEEELEELALELK 844
Score = 48.0 bits (114), Expect = 1e-05
Identities = 25/76 (32%), Positives = 39/76 (51%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+E + + + +EEE EEE +EE E EEE+ + E+EE+ +EE
Sbjct: 775 KELAEEEEKTEKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEE 834
Query: 637 EEEEEEEEEEEEEEEE 652
E EE E +EE++ E
Sbjct: 835 ELEELALELKEEQKLE 850
Score = 47.7 bits (113), Expect = 2e-05
Identities = 14/56 (25%), Positives = 29/56 (51%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
R+ + ++ EE E E + EE + + + +E+ ++ E + +E+ E EEE
Sbjct: 170 RKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE 225
Score = 47.7 bits (113), Expect = 2e-05
Identities = 24/66 (36%), Positives = 41/66 (62%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E I L++ R+E+EE E ++E E+EEE + + +EEE+E++ +EEE + +
Sbjct: 235 LNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAK 294
Query: 647 EEEEEE 652
EEEE +
Sbjct: 295 EEEELK 300
Score = 47.7 bits (113), Expect = 2e-05
Identities = 16/58 (27%), Positives = 32/58 (55%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ ER ++ EE E E + EE + +E++ +E+ ++ E + +E+ E EEE
Sbjct: 170 RKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEENL 227
Score = 47.7 bits (113), Expect = 2e-05
Identities = 25/77 (32%), Positives = 47/77 (61%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ + + E +L++ R+ ++EE+ +E E+E ++ E+E ++E +E EE E+E
Sbjct: 285 QEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKE 344
Query: 636 EEEEEEEEEEEEEEEEE 652
+E E + E EEEEEE+
Sbjct: 345 LKELEIKREAEEEEEEQ 361
Score = 47.3 bits (112), Expect = 2e-05
Identities = 25/64 (39%), Positives = 42/64 (65%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++ E+E ++E+EE EE E+E +E E + + EEEEEE+ E+ +E+ E+ EEE +
Sbjct: 325 KKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLES 384
Query: 659 EEIS 662
E +S
Sbjct: 385 ERLS 388
Score = 46.9 bits (111), Expect = 4e-05
Identities = 24/68 (35%), Positives = 38/68 (55%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E I L E+EE E ++E E+EEE + +E +EEE+E++ +EEE + +E
Sbjct: 236 NEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKE 295
Query: 647 EEEEEEVR 654
EEE +
Sbjct: 296 EEELKSEL 303
Score = 46.9 bits (111), Expect = 4e-05
Identities = 15/56 (26%), Positives = 31/56 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+++E ++ EE E E + EE ++QE + +E+ ++ E + +E+ E EE
Sbjct: 171 KKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Score = 46.5 bits (110), Expect = 5e-05
Identities = 25/62 (40%), Positives = 37/62 (59%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E EE E +EE++ E+ EEE E ++EE +EE +E +EEE EE++ + K
Sbjct: 833 EEELEELALELKEEQKLEKLAEEELERLEEEITKEELLQELLLKEEELEEQKLKDELESK 892
Query: 659 EE 660
EE
Sbjct: 893 EE 894
Score = 46.5 bits (110), Expect = 5e-05
Identities = 24/54 (44%), Positives = 41/54 (75%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+E ++ E+E ++E+EE EE E+E +E++ + E EEEEEE+ E+ +E+ E+ EE
Sbjct: 321 EKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEE 374
Score = 46.5 bits (110), Expect = 5e-05
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E I+R EEEEE+ E+ +E+ E+ EEE ++ E E + +EEE E +
Sbjct: 342 EKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELELK 401
Query: 647 EEEEEEVR 654
EEE+E +
Sbjct: 402 NEEEKEAK 409
Score = 46.1 bits (109), Expect = 5e-05
Identities = 23/61 (37%), Positives = 42/61 (68%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ + E+E ++ E+E ++E+EE EE E+E++E E + E EEEEEE+ E+ +E+ E++
Sbjct: 313 DEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQL 372
Query: 654 R 654
Sbjct: 373 E 373
Score = 46.1 bits (109), Expect = 7e-05
Identities = 20/75 (26%), Positives = 40/75 (53%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E + + + EE + +E +E+EE E ++E+++EEE + +E +EEE+E
Sbjct: 222 LEEENLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKE 281
Query: 647 EEEEEEVRGGGKEEI 661
++ +EE +E
Sbjct: 282 KKLQEEELKLLAKEE 296
Score = 45.3 bits (107), Expect = 1e-04
Identities = 27/92 (29%), Positives = 53/92 (57%)
Query: 563 NKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE 622
+L + K +++ ++ +I+ + + ++EEEEEE+ E +E+E EE
Sbjct: 721 EELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEE 780
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE+ ++ + EEE+EE+ + +EEE EEE++
Sbjct: 781 EEKTEKLKVEEEKEEKLKAQEEELRALEEELK 812
Score = 45.3 bits (107), Expect = 1e-04
Identities = 27/75 (36%), Positives = 46/75 (61%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++ I + ++ +E+EEEEE+ ++EEEEEE+ +E+E EEEE+ E+ +
Sbjct: 730 EAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEKTEKLKV 789
Query: 647 EEEEEEVRGGGKEEI 661
EEE+EE +EE+
Sbjct: 790 EEEKEEKLKAQEEEL 804
Score = 45.3 bits (107), Expect = 1e-04
Identities = 22/90 (24%), Positives = 36/90 (40%)
Query: 563 NKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE 622
K I I P + + + + E+ +EEEEE + +EE
Sbjct: 915 EKENEIEERIAEEAIILLKYESEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELG 974
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E EE+EE ++E ++E EEE
Sbjct: 975 NVNLMAIAEFEEKEERYNKDELKKERLEEE 1004
Score = 45.0 bits (106), Expect = 1e-04
Identities = 12/55 (21%), Positives = 32/55 (58%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
RE+ +++E ++ EE E E +++E + +E + +E+ ++ E + +E++
Sbjct: 167 REKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLE 221
Score = 45.0 bits (106), Expect = 1e-04
Identities = 26/82 (31%), Positives = 46/82 (56%), Gaps = 4/82 (4%)
Query: 587 RIENIIQLIRRGEREEE----EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
RI+ + +L+R + E E E E+EEE + +E +EEE+E + +EEE + +EEEE
Sbjct: 239 RIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEE 298
Query: 643 EEEEEEEEEEVRGGGKEEISLH 664
+ E + E + +E++
Sbjct: 299 LKSELLKLERRKVDDEEKLKES 320
Score = 45.0 bits (106), Expect = 2e-04
Identities = 13/57 (22%), Positives = 30/57 (52%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
R+++E ++ EE E E + EE++ +E + +E+ ++ E + +E+ E
Sbjct: 170 RKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEEN 226
Score = 45.0 bits (106), Expect = 2e-04
Identities = 12/55 (21%), Positives = 27/55 (49%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+ +++E ++ EE E E EE + +E + +E+ ++ E + +E
Sbjct: 164 AGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKE 218
Score = 44.6 bits (105), Expect = 2e-04
Identities = 21/77 (27%), Positives = 39/77 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R E + E E+EEE + +E +EEE+E++ +E + + +EEEE + E + E
Sbjct: 248 RDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLE 307
Query: 647 EEEEEEVRGGGKEEISL 663
+ ++ + E L
Sbjct: 308 RRKVDDEEKLKESEKEL 324
Score = 44.6 bits (105), Expect = 2e-04
Identities = 22/67 (32%), Positives = 42/67 (62%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+++Q + R E+EE E ++E E+EEE + +E + +E+E++ +EEE + +EEE
Sbjct: 238 ERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEE 297
Query: 647 EEEEEEV 653
E + E +
Sbjct: 298 ELKSELL 304
Score = 44.6 bits (105), Expect = 2e-04
Identities = 20/91 (21%), Positives = 41/91 (45%), Gaps = 5/91 (5%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
S + R++ +I+ + EE + +E + +E+ ++ E Q +E+ E EEE
Sbjct: 166 SREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYYQLKEKLELEEE 225
Query: 638 -----EEEEEEEEEEEEEEEVRGGGKEEISL 663
+ + EE + +E+ +EEI
Sbjct: 226 NLLYLDYLKLNEERIDLLQELLRDEQEEIES 256
Score = 44.2 bits (104), Expect = 2e-04
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+N + R +R +EE E EE+EE ++E ++E EEE++E E
Sbjct: 954 DNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREII 1013
Query: 649 EEEE 652
EE
Sbjct: 1014 EETC 1017
Score = 44.2 bits (104), Expect = 2e-04
Identities = 16/67 (23%), Positives = 32/67 (47%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
II +++ R E EEE E+ +++E ++ E E E + EE + +E +
Sbjct: 144 KVEIIAMMKPERRLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKL 203
Query: 648 EEEEEVR 654
+E+ +
Sbjct: 204 KEQAKKA 210
Score = 44.2 bits (104), Expect = 2e-04
Identities = 24/99 (24%), Positives = 47/99 (47%), Gaps = 22/99 (22%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEE----------------------EEEEEEV 626
E +Q ++ E+ ++ E + +E+ E EEE +E+EE+
Sbjct: 195 ELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDLLQELLRDEQEEI 254
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
+ ++E E+EEE + +E +EEE+ + +EE+ L
Sbjct: 255 ESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLA 293
Score = 44.2 bits (104), Expect = 3e-04
Identities = 24/64 (37%), Positives = 39/64 (60%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E+E ++E+EE EE E+E +E E + EEEEEE+ E+ +E+ E+ EEE + + +
Sbjct: 328 EKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERL 387
Query: 661 ISLH 664
S
Sbjct: 388 SSAA 391
Score = 44.2 bits (104), Expect = 3e-04
Identities = 22/66 (33%), Positives = 36/66 (54%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E ++ + EEEEEE+ E+ +E+ E+ EEE ++ E E + +EEE E
Sbjct: 340 ELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEELE 399
Query: 647 EEEEEE 652
+ EEE
Sbjct: 400 LKNEEE 405
Score = 43.8 bits (103), Expect = 3e-04
Identities = 28/83 (33%), Positives = 44/83 (53%)
Query: 572 IKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
K+ +++E + E + L + E E EEE+ E+EE+ +EEE EE+ E +
Sbjct: 785 EKLKVEEEKEEKLKAQEEELRALEEELKEEAELLEEEQLLIEQEEKIKEEELEELALELK 844
Query: 632 EEEEEEEEEEEEEEEEEEEEEVR 654
EE++ E+ EEE E EEE
Sbjct: 845 EEQKLEKLAEEELERLEEEITKE 867
Score = 43.8 bits (103), Expect = 3e-04
Identities = 23/92 (25%), Positives = 44/92 (47%)
Query: 563 NKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE 622
K + + K ++ + + E + E++ +E+EEEEE+ ++
Sbjct: 701 EIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKK 760
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EEE +E+ E +E+E EEEE+ E+ + E
Sbjct: 761 EEEEEEKSELSLKEKELAEEEEKTEKLKVEEE 792
Score = 43.8 bits (103), Expect = 3e-04
Identities = 22/67 (32%), Positives = 43/67 (64%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ +++ + +++ E+E ++E+EE EE E+E +E E + E +EEEE+ E+ +E+
Sbjct: 309 RKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEK 368
Query: 640 EEEEEEE 646
E+ EEE
Sbjct: 369 LEQLEEE 375
Score = 43.4 bits (102), Expect = 4e-04
Identities = 23/72 (31%), Positives = 41/72 (56%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E+ E I + E+EEE + +E +EEE+E++ +EEE++ +EEEE + E
Sbjct: 245 ELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELL 304
Query: 642 EEEEEEEEEEEV 653
+ E + ++EE
Sbjct: 305 KLERRKVDDEEK 316
Score = 43.4 bits (102), Expect = 4e-04
Identities = 21/76 (27%), Positives = 46/76 (60%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
++ E +E +++ + +E +EEE+E++ +EEE + +EEEE++ E + E
Sbjct: 250 EQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERR 309
Query: 637 EEEEEEEEEEEEEEEE 652
+ ++EE+ +E E+E +
Sbjct: 310 KVDDEEKLKESEKELK 325
Score = 43.4 bits (102), Expect = 5e-04
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 1/99 (1%)
Query: 564 KLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE 623
K + K + + E S + + + E EE + E E EE EE
Sbjct: 886 KDELESKEEKEKEEKKELEEESQKDNLLEEKENEIEERIAEEAIILLKYESEPEELLLEE 945
Query: 624 EEVQEEEEE-EEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+ +E+EE+ +EEEEE + +EE V E
Sbjct: 946 ADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEF 984
Score = 43.0 bits (101), Expect = 5e-04
Identities = 20/92 (21%), Positives = 40/92 (43%)
Query: 562 TNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE 621
+ Q+ + + E + EE + +E +EEE+E++ +
Sbjct: 226 NLLYLDYLKLNEERIDLLQELLRDEQEEIESSKQELEKEEEILAQVLKENKEEEKEKKLQ 285
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EEE +EEEE + E + E + ++EE++
Sbjct: 286 EEELKLLAKEEEELKSELLKLERRKVDDEEKL 317
Score = 43.0 bits (101), Expect = 6e-04
Identities = 22/66 (33%), Positives = 39/66 (59%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
IE + + ++ E + E EEEEEE+ E+ +E+ E+ EEE+ +++ E E + +EEE
Sbjct: 338 IEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKLKEEE 397
Query: 648 EEEEEV 653
E +
Sbjct: 398 LELKNE 403
Score = 43.0 bits (101), Expect = 6e-04
Identities = 20/73 (27%), Positives = 36/73 (49%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E +E + + + +EEEEE + +EE + E EE+EE ++E
Sbjct: 936 SEPEELLLEEADEKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDE 995
Query: 641 EEEEEEEEEEEEV 653
++E EEE++E+
Sbjct: 996 LKKERLEEEKKEL 1008
Score = 42.3 bits (99), Expect = 8e-04
Identities = 17/64 (26%), Positives = 28/64 (43%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E + +R +EE E EE+EE + + ++E EEE++E E EE
Sbjct: 956 KEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEE 1015
Query: 648 EEEE 651
+
Sbjct: 1016 TCQR 1019
Score = 42.3 bits (99), Expect = 9e-04
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ + +L + ++E+EE EE E+E +E E + E EEEE ++ E+ +E+ E+ EEE +++
Sbjct: 322 KELKKLEKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKK 381
Query: 649 EEEEVRGGGKEEISL 663
E E +
Sbjct: 382 LESERLSSAAKLKEE 396
Score = 42.3 bits (99), Expect = 0.001
Identities = 11/68 (16%), Positives = 30/68 (44%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R I + + +++E ++ EE E E + + + +E + +E+ ++ E
Sbjct: 155 RRLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKALEYY 214
Query: 647 EEEEEEVR 654
+ +E+
Sbjct: 215 QLKEKLEL 222
Score = 41.9 bits (98), Expect = 0.001
Identities = 27/86 (31%), Positives = 45/86 (52%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
E E + L ++ + +EEEEE+ ++EEEEEE+ E + +E EEEE+
Sbjct: 724 LADKVQEAQDKINEELKLLEQKIKEKEEEEEKSRLKKEEEEEEKSELSLKEKELAEEEEK 783
Query: 636 EEEEEEEEEEEEEEEEEVRGGGKEEI 661
E+ + EEE+EE+ + + E
Sbjct: 784 TEKLKVEEEKEEKLKAQEEELRALEE 809
Score = 41.9 bits (98), Expect = 0.001
Identities = 29/97 (29%), Positives = 50/97 (51%)
Query: 563 NKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE 622
+LK+ ++ K D++++ E + +EE EE E+E +E E + E EE
Sbjct: 297 EELKSELLKLERRKVDDEEKLKESEKELKKLEKELKKEKEEIEELEKELKELEIKREAEE 356
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EEE Q E+ +E+ E+ EEE +++ E E + K
Sbjct: 357 EEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKL 393
Score = 41.1 bits (96), Expect = 0.002
Identities = 17/72 (23%), Positives = 32/72 (44%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
++++ + E + R +EE E EE+EE ++ ++E EEE++E
Sbjct: 948 EKEKEEDNKEEEEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKE 1007
Query: 639 EEEEEEEEEEEE 650
E EE +
Sbjct: 1008 LLREIIEETCQR 1019
Score = 41.1 bits (96), Expect = 0.002
Identities = 24/93 (25%), Positives = 46/93 (49%)
Query: 560 PNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEE 619
++K IK + E + + + + E + E++ +E+EEEEE+
Sbjct: 697 RRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELKLLEQKIKEKEEEEEKS 756
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++EE +EE+ E +E+E EEEE+ E+ +
Sbjct: 757 RLKKEEEEEEKSELSLKEKELAEEEEKTEKLKV 789
Score = 40.7 bits (95), Expect = 0.002
Identities = 26/65 (40%), Positives = 38/65 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E+EE EE E+E +E E + E EEEEEE E+ +E+ E+ EEE +++ E E
Sbjct: 334 EKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERLSSAAKL 393
Query: 659 EEISL 663
+E L
Sbjct: 394 KEEEL 398
Score = 40.7 bits (95), Expect = 0.003
Identities = 23/72 (31%), Positives = 46/72 (63%), Gaps = 6/72 (8%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEE------EEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+ E I+ + + +EEE+E++ +EEE EEEE + E + E ++ ++EE+ +E E+
Sbjct: 263 KEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEK 322
Query: 641 EEEEEEEEEEEE 652
E ++ E+E ++E
Sbjct: 323 ELKKLEKELKKE 334
Score = 40.3 bits (94), Expect = 0.003
Identities = 18/75 (24%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EN+ +LI E + +E + +E+ ++ E + +E+++ EEE + + EE +
Sbjct: 184 ENLAELIID-LEELKLQELKLKEQAKKALEYYQLKEKLELEEENLLYLDYLKLNEERIDL 242
Query: 649 EEEEVRGGGKEEISL 663
+E +R +E S
Sbjct: 243 LQELLRDEQEEIESS 257
Score = 39.6 bits (92), Expect = 0.006
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE-------EEEEE 640
+ + + E E+E +E E + E EEEEEE+ E+ ++ E+ EEE E E
Sbjct: 328 EKELKKEKEEIEELEKELKELEIKREAEEEEEEQLEKLQEKLEQLEEELLAKKKLESERL 387
Query: 641 EEEEEEEEEEEEVRGGGKEEISL 663
+ +EEE E++ ++E L
Sbjct: 388 SSAAKLKEEELELKNEEEKEAKL 410
Score = 39.6 bits (92), Expect = 0.006
Identities = 17/66 (25%), Positives = 40/66 (60%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++ + + ++ +EEE + +EEEE + E + E + ++EE+ +E E+E ++ E+
Sbjct: 270 QVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEEKLKESEKELKKLEK 329
Query: 647 EEEEEE 652
E ++E+
Sbjct: 330 ELKKEK 335
Score = 39.6 bits (92), Expect = 0.007
Identities = 17/64 (26%), Positives = 29/64 (45%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
N L+ + E E EE+EE ++E ++ + EEE++E E EE +
Sbjct: 960 EERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQR 1019
Query: 647 EEEE 650
+E
Sbjct: 1020 FKEF 1023
Score = 38.4 bits (89), Expect = 0.014
Identities = 19/76 (25%), Positives = 36/76 (47%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ +E +EEE+E++ +EEE + +EEE + E + E + ++EE
Sbjct: 256 SSKQELEKEEEILAQVLKENKEEEKEKKLQEEELKLLAKEEEELKSELLKLERRKVDDEE 315
Query: 648 EEEEEVRGGGKEEISL 663
+ +E + K E L
Sbjct: 316 KLKESEKELKKLEKEL 331
Score = 38.4 bits (89), Expect = 0.015
Identities = 15/56 (26%), Positives = 25/56 (44%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E + +EE E E +EE ++E ++E EEE++E E +
Sbjct: 959 EEERNKRLLLAKEELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIE 1014
Score = 37.6 bits (87), Expect = 0.022
Identities = 22/74 (29%), Positives = 44/74 (59%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ E + L R+ E +++E+ +EE ++ + E+EE ++VQE +++ EE +
Sbjct: 681 ELQEKAESELAKNEILRRQEEIKKKEQRIKEELKKLKLEKEELLADKVQEAQDKINEELK 740
Query: 639 EEEEEEEEEEEEEE 652
E++ +E+EEEEE
Sbjct: 741 LLEQKIKEKEEEEE 754
Score = 35.3 bits (81), Expect = 0.11
Identities = 15/64 (23%), Positives = 25/64 (39%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+ E E EEE E+ +++E + EE E E + EE + +E + K
Sbjct: 151 MKPERRLEIEEEAAGSREKRKKKERLKKLIEETENLAELIIDLEELKLQELKLKEQAKKA 210
Query: 660 EISL 663
Sbjct: 211 LEYY 214
Score = 33.4 bits (76), Expect = 0.52
Identities = 21/83 (25%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E+G+ + I + + ER ++E ++E EEE++E E EE + +E E
Sbjct: 972 ELGNVNLMAIAEFEEKEERYNKDELKKERLEEEKKELLREIIEETCQRFKEFLELFVSIN 1031
Query: 642 EEEEEEEEEEEVRGGGKEEISLH 664
+ E GG E+ L
Sbjct: 1032 RGLNKVFFYLE--LGGSAELRLE 1052
>gnl|CDD|222636 pfam14265, DUF4355, Domain of unknown function (DUF4355). This
family of proteins is found in bacteria and viruses.
Proteins in this family are typically between 180 and
214 amino acids in length.
Length = 125
Score = 48.4 bits (116), Expect = 7e-07
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+ + E+++EE++ E E+ + EE+ + E E+ E+E EE E E E + E +
Sbjct: 20 EKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRELKAEAK 75
Score = 44.6 bits (106), Expect = 1e-05
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+E+ + E+++EE++ E E+ ++ EE+ E E E+ E+E EE E E
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELA 66
Score = 43.8 bits (104), Expect = 3e-05
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+E+ + E+++EE++ E E++ + EE+ E E E+ E+E EE E E+
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELA 66
Score = 42.6 bits (101), Expect = 6e-05
Identities = 17/52 (32%), Positives = 31/52 (59%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E+ + E+++EE++ E E+ + +E+ E E E+ E+E EE E E E
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELARRE 69
Score = 42.2 bits (100), Expect = 9e-05
Identities = 18/50 (36%), Positives = 31/50 (62%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+E+ + E+++EE++ E E+ + EE+ E E E+ E+E EE E E R
Sbjct: 18 AKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEELEAELAR 67
Score = 41.9 bits (99), Expect = 1e-04
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 5/73 (6%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
KT E+ I + +++EE++ E E+ + EE+ E E+++ E+E EE
Sbjct: 6 KTFTDKEVDK-----AIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKLEKELEE 60
Query: 636 EEEEEEEEEEEEE 648
E E E + E
Sbjct: 61 LEAELARRELKAE 73
Score = 34.9 bits (81), Expect = 0.035
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EEE+ ++E ++ +E+ + E++ +E++ E E+ + EE+ E E E+
Sbjct: 1 EPEEEKTFTDKEVDKAIAKEKAKWEKKQEEKKSEAEKLAKMSAEEKAEYELEKL 54
>gnl|CDD|223649 COG0576, GrpE, Molecular chaperone GrpE (heat shock protein)
[Posttranslational modification, protein turnover,
chaperones].
Length = 193
Score = 49.6 bits (119), Expect = 9e-07
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE + EE EE E+ EEEE EEEE +E E EEE++E E E + EE +++ +R
Sbjct: 8 TEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLR 61
Score = 49.3 bits (118), Expect = 1e-06
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ ++ EE + EE EE E+ EEEE EEE EEE E EEE++E E E + EE ++
Sbjct: 4 KEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKD 57
Score = 48.9 bits (117), Expect = 1e-06
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++E++ EE + EE EE E+ EEEE EE + EEE E EEE++E E E + EE +
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELK 56
Score = 45.0 bits (107), Expect = 3e-05
Identities = 29/66 (43%), Positives = 37/66 (56%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + E EE E+ EEEE EEEE EEE E EEE QE E E + EE +++ +
Sbjct: 5 EQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQA 64
Query: 649 EEEEVR 654
E E +R
Sbjct: 65 EFENLR 70
Score = 43.9 bits (104), Expect = 7e-05
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++E++ EE + EE E E+ EEEE EEEE EEE E EEE++E+
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEI 45
Score = 43.1 bits (102), Expect = 1e-04
Identities = 26/64 (40%), Positives = 34/64 (53%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ E EE E+ EEEE EEEE EEE E EE Q+E E E + EE +++ +
Sbjct: 4 KEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQ 63
Query: 649 EEEE 652
E E
Sbjct: 64 AEFE 67
Score = 42.3 bits (100), Expect = 3e-04
Identities = 22/42 (52%), Positives = 30/42 (71%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++E++ EE + EE +E E+ EEEE EEEE EEE E EEE+
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQE 44
Score = 39.2 bits (92), Expect = 0.002
Identities = 21/45 (46%), Positives = 28/45 (62%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++E++ EE + +E EE E+ EEEE EEEE EEE E E E
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAE 47
Score = 37.3 bits (87), Expect = 0.010
Identities = 26/76 (34%), Positives = 38/76 (50%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
SD+++ + + E EE EEEE EEE E EEE++E E E Q EE +++
Sbjct: 2 SDKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLR 61
Query: 638 EEEEEEEEEEEEEEEV 653
+ E E + E E
Sbjct: 62 AQAEFENLRKRTERER 77
Score = 35.4 bits (82), Expect = 0.044
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EEEE EEE E EEE++E E E +++E +++ + E E + E E E
Sbjct: 25 EEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTERERE 78
Score = 31.9 bits (73), Expect = 0.77
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EEEE EEE E EEE++E E E + + +++ + E E + E E EE +
Sbjct: 28 EEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREEAK 81
Score = 31.9 bits (73), Expect = 0.78
Identities = 21/55 (38%), Positives = 30/55 (54%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E EE EEE E EEE++E E E + EE++++ + E E + E E EE
Sbjct: 25 EEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRAQAEFENLRKRTEREREE 79
Score = 30.4 bits (69), Expect = 1.9
Identities = 19/77 (24%), Positives = 34/77 (44%)
Query: 569 RPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
K + ++ + + E E E E EEE++E E E + EE +++ ++
Sbjct: 3 DKEQKTEEPDAEETEEAEKSEEEEAEEEEPEEENELEEEQQEIAELEAQLEELKDKYLRA 62
Query: 629 EEEEEEEEEEEEEEEEE 645
+ E E + E E EE
Sbjct: 63 QAEFENLRKRTEREREE 79
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid).
Members of this family are bacterial proteins with a
conserved motif [KR]FYDLN, sometimes flanked by a pair
of CXXC motifs, followed by a long region of low
complexity sequence in which roughly half the residues
are Asp and Glu, including multiple runs of five or more
acidic residues. The function of members of this family
is unknown.
Length = 104
Score = 47.3 bits (113), Expect = 1e-06
Identities = 6/56 (10%), Positives = 40/56 (71%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ +++E+EE+E++ ++++++++++ + ++++ + ++++++ E++++E
Sbjct: 49 DAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDDE 104
Score = 46.5 bits (111), Expect = 2e-06
Identities = 8/61 (13%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE----EEEEEEEEEEEEE 651
R + E+ +++E+EE+E++ +++++ ++++ + +++ ++++++ E++++
Sbjct: 44 RAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDD 103
Query: 652 E 652
E
Sbjct: 104 E 104
Score = 40.8 bits (96), Expect = 2e-04
Identities = 8/56 (14%), Positives = 33/56 (58%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
GE E + + E+ +++E+E E++ +++++++++++ + ++++V
Sbjct: 33 GEEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDV 88
Score = 40.8 bits (96), Expect = 2e-04
Identities = 7/61 (11%), Positives = 38/61 (62%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
R + E+ +++E+EE+E++ + ++++++++ + ++++ + ++++++ +
Sbjct: 44 RAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDLDDDDDDFLEDDDD 103
Query: 660 E 660
E
Sbjct: 104 E 104
Score = 38.4 bits (90), Expect = 0.001
Identities = 9/57 (15%), Positives = 34/57 (59%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EE E + + E+ +++E+EE+E++ ++++++++++++ +++ L
Sbjct: 34 EEVPPEVAKSRAPAADAEDAAKKDEDEEDEDDVVLDDDDDDDDDDDLPDLDDDDVDL 90
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi. This family includes
the fifth essential DNA polymerase in yeast EC:2.7.7.7.
Pol5p is localised exclusively to the nucleolus and
binds near or at the enhancer region of rRNA-encoding
DNA repeating units.
Length = 784
Score = 51.4 bits (123), Expect = 1e-06
Identities = 21/55 (38%), Positives = 37/55 (67%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++ E EEE+E++ EE +++E+E E E+ E E E + E+ EE+E+E++ E G
Sbjct: 642 QQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEG 696
Score = 51.0 bits (122), Expect = 2e-06
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E EEE+E++ EE +++E+E E E E E E + E+ EE+E+E++ E E V K
Sbjct: 646 EGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKA 703
Score = 50.3 bits (120), Expect = 3e-06
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E EEE+E++ EE +++E+E E E+ E + E + E+ EE+E+E++ E E +
Sbjct: 646 EGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPID 701
Score = 49.9 bits (119), Expect = 4e-06
Identities = 20/53 (37%), Positives = 35/53 (66%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E EEE+E++ EE +++E+E E E+ + E E + E+ EE+E+E++ E E
Sbjct: 643 QLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANE 695
Score = 49.5 bits (118), Expect = 5e-06
Identities = 20/65 (30%), Positives = 42/65 (64%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
++ I+ +++ E + ++ E EEE+E++ EE +++E + E E+ E E E + E+ EE
Sbjct: 625 LQLILDVLKADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEE 684
Query: 648 EEEEE 652
+E+E+
Sbjct: 685 DEQED 689
Score = 48.3 bits (115), Expect = 1e-05
Identities = 21/66 (31%), Positives = 41/66 (62%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
I ++++ R ++ E EEE+E++ EE +++E+E E+ E E E + E+ EE+E
Sbjct: 627 LILDVLKADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDE 686
Query: 647 EEEEEE 652
+E++ E
Sbjct: 687 QEDDAE 692
Score = 48.3 bits (115), Expect = 1e-05
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++ E EEE+E++ EE +++E+E E E E E + E+ EE+E+E++ E E
Sbjct: 642 QQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPID 701
Query: 659 EEI 661
+ +
Sbjct: 702 KAV 704
Score = 47.6 bits (113), Expect = 2e-05
Identities = 22/59 (37%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 598 GEREEEE--EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
GE E+E+ EE +++E+E E E+ E E E E+ EE+E+E++ E E ++ VR
Sbjct: 647 GEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVR 705
Score = 46.4 bits (110), Expect = 5e-05
Identities = 20/64 (31%), Positives = 37/64 (57%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + ++ + +E + ++ E EEE+E++ EE + E+E E E+ E E E + E+
Sbjct: 623 EGLQLILDVLKADENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDG 682
Query: 649 EEEE 652
EE+E
Sbjct: 683 EEDE 686
Score = 42.2 bits (99), Expect = 9e-04
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E +++E+E E E+ E E E + E+ E E+E++ E E ++ +V
Sbjct: 656 EETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKV 711
Score = 39.9 bits (93), Expect = 0.005
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E + ++ E EEE+E++++E +++E+E E E+ E E E + E+ +E+
Sbjct: 636 ENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQED 689
Score = 39.1 bits (91), Expect = 0.008
Identities = 15/65 (23%), Positives = 35/65 (53%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
E + ++ E EEE+E++ + +++E+E E E+ E E E + E+ +++ +
Sbjct: 636 ENKSRHQQLFEGEEEDEDDLEETDDDEDECEAIEDSESESESDGEDGEEDEQEDDAEANE 695
Query: 666 YVLYV 670
V+ +
Sbjct: 696 GVVPI 700
Score = 37.2 bits (86), Expect = 0.034
Identities = 17/68 (25%), Positives = 27/68 (39%), Gaps = 13/68 (19%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE-------------E 645
E E E E+ E E E + E+ EE+E+E E E ++
Sbjct: 662 EDECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDALDGG 721
Query: 646 EEEEEEEV 653
+ E+EE +
Sbjct: 722 DSEDEEGM 729
Score = 36.0 bits (83), Expect = 0.075
Identities = 15/62 (24%), Positives = 29/62 (46%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E E+ E E E + E+ EE+E+E++ + E ++ + + + GG
Sbjct: 664 ECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDALDGGDS 723
Query: 659 EE 660
E+
Sbjct: 724 ED 725
Score = 36.0 bits (83), Expect = 0.077
Identities = 15/62 (24%), Positives = 26/62 (41%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ E E+ E E E + E+ EE+E+E+ E E ++ + + GG
Sbjct: 663 DECEAIEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDALDGGD 722
Query: 659 EE 660
E
Sbjct: 723 SE 724
Score = 33.3 bits (76), Expect = 0.46
Identities = 15/77 (19%), Positives = 32/77 (41%), Gaps = 21/77 (27%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEE--------EEEVQEE-------------EEEEEEE 636
E E E E + E+ EE+E+E++ E ++ V+ + E+EE
Sbjct: 668 IEDSESESESDGEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDALDGGDSEDEE 727
Query: 637 EEEEEEEEEEEEEEEEV 653
++E+ + ++
Sbjct: 728 GMDDEQMMRLDTYLAQI 744
Score = 30.2 bits (68), Expect = 4.2
Identities = 13/58 (22%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEE-EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
GE EE+E+E++ E E ++ + + + + + E+EE ++E+ +R
Sbjct: 679 GEDGEEDEQEDDAEANEGVVPIDKAVRRALPKVLNLPDALDGGDSEDEEGMDDEQMMR 736
>gnl|CDD|131972 TIGR02926, AhaH, ATP synthase archaeal, H subunit. he A1/A0 ATP
synthase is homologous to the V-type (V1/V0, vacuolar)
ATPase, but functions in the ATP synthetic direction as
does the F1/F0 ATPase of bacteria. The hydrophilic A1
"stalk" complex (AhaABCDEFG) is the site of ATP
generation and is coupled to the membrane-embedded
proton translocating A0 complex. It is unclear precisely
where AhaH fits into these complexes.
Length = 85
Score = 46.4 bits (110), Expect = 1e-06
Identities = 29/74 (39%), Positives = 40/74 (54%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+E I + E EE EEE ++ E EE E E EEE + EE +E EEE E
Sbjct: 1 LEEIKKAEEDAEELIEEAEEERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIE 60
Query: 648 EEEEEVRGGGKEEI 661
+E E++R G++EI
Sbjct: 61 KEAEKIREEGEKEI 74
Score = 41.8 bits (98), Expect = 5e-05
Identities = 25/56 (44%), Positives = 32/56 (57%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
R +R E EE E EE EEE + EE+ +E EEE E+E E+ EE E+E E
Sbjct: 21 ERKQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEA 76
Score = 38.3 bits (89), Expect = 0.001
Identities = 23/61 (37%), Positives = 32/61 (52%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ I R RE EE EEE + EE +E EEE +E E+ EE E+E E + + +
Sbjct: 23 KQRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSKAK 82
Query: 649 E 649
E
Sbjct: 83 E 83
Score = 35.2 bits (81), Expect = 0.013
Identities = 23/60 (38%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEE--EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
Q I E E EE EEE + EE +E EEE+++E E+ EE E+E E + + +E
Sbjct: 24 QRIAEAREEARELLEEAEEEASKLGEEIIKEAEEEIEKEAEKIREEGEKEIEAMKSKAKE 83
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta;
Reviewed.
Length = 129
Score = 47.7 bits (114), Expect = 1e-06
Identities = 12/52 (23%), Positives = 37/52 (71%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+EE EE+ ++++++ + +++ + ++ +++ +EE+ +EE++E+EE+E
Sbjct: 77 DEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDE 128
Score = 45.0 bits (107), Expect = 1e-05
Identities = 11/48 (22%), Positives = 36/48 (75%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE+ ++++++ + +++ ++++ +++ +EE+ +EE++E+EE+EE
Sbjct: 82 PLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDEEDEE 129
Score = 38.8 bits (91), Expect = 0.002
Identities = 10/51 (19%), Positives = 33/51 (64%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E +EE EE+ ++++++ + + +++ +++ +EE+ +EE++E+
Sbjct: 74 DEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDED 124
Score = 38.5 bits (90), Expect = 0.002
Identities = 11/52 (21%), Positives = 34/52 (65%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E +EE EE+ ++++++ + + +++ +++ +EE+ +EE++E+E
Sbjct: 74 DEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDLDEEDDEDE 125
Score = 29.6 bits (67), Expect = 2.3
Identities = 6/42 (14%), Positives = 25/42 (59%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+E +EE EE+ +++++ + +++ +++ +++ +E
Sbjct: 74 DEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEE 115
Score = 28.1 bits (63), Expect = 8.2
Identities = 7/44 (15%), Positives = 26/44 (59%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
+E +EE+ EE+ ++++++ + +++ +++ + +E L
Sbjct: 74 DEIDEEIIPLEEKFDKKKKKFMDGDDDIIDDDILPDDDFDEEDL 117
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein. This is a family of
fungal and plant proteins and contains many hypothetical
proteins. VID27 is a cytoplasmic protein that plays a
potential role in vacuolar protein degradation.
Length = 794
Score = 51.3 bits (123), Expect = 1e-06
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E E ++EEEE+EEEEEEE+E+E +E ++EE EE++ E + E+
Sbjct: 382 EDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 51.3 bits (123), Expect = 2e-06
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E+ E ++EEEE+EEEEEEE+E + +E ++EE EE++ E + E+
Sbjct: 380 EIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 50.9 bits (122), Expect = 2e-06
Identities = 23/50 (46%), Positives = 36/50 (72%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E E+ E ++EEEE+EEEEEEE+E+E +E ++EE EE++ E + E+
Sbjct: 380 EIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 50.9 bits (122), Expect = 2e-06
Identities = 29/110 (26%), Positives = 49/110 (44%), Gaps = 23/110 (20%)
Query: 538 EDFKPFVTALMNSEWQSL----WDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQ 593
+ F F + W++L W T + I + + D +
Sbjct: 339 DAFTHFQEGFTQALWETLNKQKWTKAKETEQ-DYILDAFSALEIEDANT----------- 386
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E ++EEEE+EEEEEEE+E+E +E ++EE EE++ E + E+
Sbjct: 387 -------ERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYED 429
Score = 49.8 bits (119), Expect = 4e-06
Identities = 22/62 (35%), Positives = 36/62 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E++ + E E+ E ++EEEE +EEEEEE+E+E +E ++EE EE+
Sbjct: 368 EQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKY 427
Query: 659 EE 660
E+
Sbjct: 428 ED 429
Score = 48.6 bits (116), Expect = 1e-05
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E E+ E ++EEEE+EEEEEEE ++E +E ++EE EE++ E + E+ G
Sbjct: 379 LEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDG 432
Score = 46.3 bits (110), Expect = 4e-05
Identities = 21/61 (34%), Positives = 34/61 (55%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E +++ + +E E++ + E E+ E ++EEEE+EEEEEEE+E G KE
Sbjct: 354 ETLNKQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHS 413
Query: 662 S 662
Sbjct: 414 D 414
Score = 45.9 bits (109), Expect = 7e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
E E+ E ++EEEE+EEE +EE+E+E +E ++EE EE++ E SL
Sbjct: 377 SALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEEFEEDDVESKYEDSDGNSSL 436
Score = 44.4 bits (105), Expect = 2e-04
Identities = 20/60 (33%), Positives = 33/60 (55%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+++ + +E E++ + E E E ++EEEE+EEEEEEE+E+E EE
Sbjct: 358 KQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEHSDDEE 417
Score = 42.4 bits (100), Expect = 7e-04
Identities = 19/55 (34%), Positives = 34/55 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+++ + +E E++ + E E+ E ++EEEE+EEEEEEE+E+E +E
Sbjct: 358 KQKWTKAKETEQDYILDAFSALEIEDANTERDDEEEEDEEEEEEEDEDEGPSKEH 412
Score = 30.9 bits (70), Expect = 2.7
Identities = 11/30 (36%), Positives = 20/30 (66%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
EE E E +EEE+ E++E+ + + +E+E
Sbjct: 65 YEEGEAELDEEEDGEDDELSVDSGQSKEDE 94
Score = 30.9 bits (70), Expect = 2.8
Identities = 12/30 (40%), Positives = 19/30 (63%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
EE E E +EEE+ E++E + Q +E+E
Sbjct: 65 YEEGEAELDEEEDGEDDELSVDSGQSKEDE 94
Score = 30.1 bits (68), Expect = 4.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
R EE E E +EEE+ E++E + +E+E
Sbjct: 63 RVYEEGEAELDEEEDGEDDELSVDSGQSKEDE 94
>gnl|CDD|234311 TIGR03685, L12P_arch, 50S ribosomal protein L12P. This model
represents the L12P protein of the large (50S) subunit
of the archaeal ribosome.
Length = 105
Score = 47.0 bits (112), Expect = 2e-06
Identities = 19/29 (65%), Positives = 19/29 (65%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
EEEEEEEEEEEEEEEE EE G
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEEAMAG 99
Score = 47.0 bits (112), Expect = 2e-06
Identities = 20/29 (68%), Positives = 20/29 (68%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
EEEEEEEEEEEEEEEE EEE G
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEEAMAG 99
Score = 46.6 bits (111), Expect = 2e-06
Identities = 20/30 (66%), Positives = 21/30 (70%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EEEEEEEEEEEEEEEE EEE + G
Sbjct: 70 AAAAAAEEEEEEEEEEEEEEEESEEEAMAG 99
Score = 45.4 bits (108), Expect = 5e-06
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEE 625
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 43.9 bits (104), Expect = 1e-05
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEE 622
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 42.7 bits (101), Expect = 4e-05
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEE 648
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 42.0 bits (99), Expect = 7e-05
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEE 646
+EEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 42.0 bits (99), Expect = 8e-05
Identities = 18/25 (72%), Positives = 18/25 (72%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEE 630
EEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 42.0 bits (99), Expect = 9e-05
Identities = 19/25 (76%), Positives = 19/25 (76%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEE 647
EEEEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.6 bits (98), Expect = 1e-04
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEE 643
EE +EEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.6 bits (98), Expect = 1e-04
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEE 644
E +EEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.6 bits (98), Expect = 1e-04
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEE 642
EEE +EEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 41.2 bits (97), Expect = 1e-04
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEE 645
+EEEEEEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEE 641
EEEE +EEEEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 40.8 bits (96), Expect = 2e-04
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEE 633
EEEEEEEEEEEE +EE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 40.4 bits (95), Expect = 2e-04
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEE 631
EEEEEEEEEEEEEE + EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 40.4 bits (95), Expect = 3e-04
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEE 638
EEEEEEE +EEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 40.4 bits (95), Expect = 3e-04
Identities = 17/25 (68%), Positives = 18/25 (72%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEE 632
EEEEEEEEEEEEE +E EEE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 40.4 bits (95), Expect = 3e-04
Identities = 18/25 (72%), Positives = 19/25 (76%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEE 629
EEEEEEEEEEEEEEEE +EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEE 95
Score = 40.4 bits (95), Expect = 3e-04
Identities = 19/27 (70%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEE 636
EEEEEEEEEEE EEEEE EEE
Sbjct: 71 AAAAAEEEEEEEEEEE--EEEEESEEE 95
Score = 40.4 bits (95), Expect = 3e-04
Identities = 19/27 (70%), Positives = 19/27 (70%), Gaps = 2/27 (7%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEE 639
EEEEEEEE EEEEEEEE EEE
Sbjct: 71 AAAAAEEEEEEEE--EEEEEEEESEEE 95
Score = 32.7 bits (75), Expect = 0.12
Identities = 14/26 (53%), Positives = 15/26 (57%)
Query: 636 EEEEEEEEEEEEEEEEEVRGGGKEEI 661
EEEEEEEEEEEE +EE
Sbjct: 71 AAAAAEEEEEEEEEEEEEEEESEEEA 96
>gnl|CDD|173534 PTZ00341, PTZ00341, Ring-infected erythrocyte surface antigen;
Provisional.
Length = 1136
Score = 51.3 bits (122), Expect = 2e-06
Identities = 33/76 (43%), Positives = 36/76 (47%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
ENI + I + E EE EE EE EE EE EE V+E EE EE EE EE EE
Sbjct: 1055 ENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEEN 1114
Query: 649 EEEEVRGGGKEEISLH 664
EE E H
Sbjct: 1115 AEENAEEYDDENPEEH 1130
Score = 50.2 bits (119), Expect = 3e-06
Identities = 29/72 (40%), Positives = 35/72 (48%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+E +E I + I E EE EE EE EE EE EE +E EE EE EE
Sbjct: 1062 EEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEE 1121
Query: 641 EEEEEEEEEEEE 652
++E EE EE
Sbjct: 1122 YDDENPEEHNEE 1133
Score = 48.6 bits (115), Expect = 1e-05
Identities = 32/73 (43%), Positives = 35/73 (47%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
IE I+ EE EE EE EE EE EE EE++E EE EE EE EE E
Sbjct: 1057 IEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAE 1116
Query: 648 EEEEEVRGGGKEE 660
E EE EE
Sbjct: 1117 ENAEEYDDENPEE 1129
Score = 48.6 bits (115), Expect = 1e-05
Identities = 33/95 (34%), Positives = 47/95 (49%)
Query: 565 LKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEE 624
++ + +++ + + +EI EN+ + I E +EE EE EE EE EE EE
Sbjct: 1027 VEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEE 1086
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
V+E EE EE EE EE EE EE +E
Sbjct: 1087 NVEENVEEIEENVEENVEENAEENAEENAEENAEE 1121
Score = 48.2 bits (114), Expect = 1e-05
Identities = 28/63 (44%), Positives = 33/63 (52%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
ENI + I E EE EE EE EE EE EE +E EE EE ++E EE EE
Sbjct: 1074 ENIEENIEENVEENVEENVEEIEENVEENVEENAEENAEENAEENAEEYDDENPEEHNEE 1133
Query: 649 EEE 651
+E
Sbjct: 1134 YDE 1136
Score = 47.1 bits (111), Expect = 3e-05
Identities = 30/73 (41%), Positives = 35/73 (47%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EN + + E EE +EE EE EE EE EE V+E EE EE EE EE EE
Sbjct: 1047 ENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEEN 1106
Query: 649 EEEEVRGGGKEEI 661
EE +E
Sbjct: 1107 AEENAEENAEENA 1119
Score = 47.1 bits (111), Expect = 3e-05
Identities = 32/83 (38%), Positives = 40/83 (48%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ DE +E ++ EE EE EE EE EE EE +EE EE EE EE
Sbjct: 1021 EYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENI 1080
Query: 639 EEEEEEEEEEEEEEVRGGGKEEI 661
EE EE EE EE+ +E +
Sbjct: 1081 EENVEENVEENVEEIEENVEENV 1103
Score = 47.1 bits (111), Expect = 4e-05
Identities = 31/73 (42%), Positives = 39/73 (53%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EN+ + I E EE EE EE +EE EE EE V+E +EE EE EE EE EE
Sbjct: 997 ENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEEN 1056
Query: 649 EEEEVRGGGKEEI 661
EE + +E +
Sbjct: 1057 IEENIEEYDEENV 1069
Score = 46.7 bits (110), Expect = 4e-05
Identities = 30/73 (41%), Positives = 36/73 (49%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E ++ I E EE EE EE +EE EE EE ++E EE EE EE EE EE
Sbjct: 1039 EENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEEN 1098
Query: 649 EEEEVRGGGKEEI 661
EE V +E
Sbjct: 1099 VEENVEENAEENA 1111
Score = 46.3 bits (109), Expect = 5e-05
Identities = 31/74 (41%), Positives = 39/74 (52%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
IE ++ EE EE EE +EE EE EE EE V+E EE EE +EE EE EE
Sbjct: 1015 IEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEE 1074
Query: 648 EEEEEVRGGGKEEI 661
EE + +E +
Sbjct: 1075 NIEENIEENVEENV 1088
Score = 46.3 bits (109), Expect = 5e-05
Identities = 30/85 (35%), Positives = 42/85 (49%)
Query: 563 NKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE 622
N + I +I+ + + +EI ENI + + E EE EE EE EE EE
Sbjct: 1052 NVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEEIEENVEENVEENAEENA 1111
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEE 647
EE +E EE ++E EE EE +E
Sbjct: 1112 EENAEENAEEYDDENPEEHNEEYDE 1136
Score = 45.9 bits (108), Expect = 7e-05
Identities = 32/73 (43%), Positives = 38/73 (52%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EN+ + + E EE EE EE EE EE +EE EE EE EE +EE EE EE
Sbjct: 989 ENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEEN 1048
Query: 649 EEEEVRGGGKEEI 661
EE V +E I
Sbjct: 1049 AEENVEENIEENI 1061
Score = 45.5 bits (107), Expect = 8e-05
Identities = 30/81 (37%), Positives = 37/81 (45%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+E +E I + E EE EE +EE EE EE EE ++E EE EE EE
Sbjct: 1035 EEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIEENIEENVEENVEENVEE 1094
Query: 641 EEEEEEEEEEEEVRGGGKEEI 661
EE EE EE +E
Sbjct: 1095 IEENVEENVEENAEENAEENA 1115
Score = 45.5 bits (107), Expect = 9e-05
Identities = 32/73 (43%), Positives = 36/73 (49%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EN+ + + E EE EE EE EE EE EE EE EE EE +EE EE EE
Sbjct: 973 ENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEE 1032
Query: 649 EEEEVRGGGKEEI 661
EE EEI
Sbjct: 1033 NVEEYDEENVEEI 1045
Score = 45.5 bits (107), Expect = 1e-04
Identities = 31/61 (50%), Positives = 32/61 (52%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE EE EE +EE EE EE EE EE EE EE EE EE EE EE EE
Sbjct: 1012 EENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEE 1071
Query: 661 I 661
I
Sbjct: 1072 I 1072
Score = 45.2 bits (106), Expect = 1e-04
Identities = 29/63 (46%), Positives = 31/63 (49%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E EE EE EE EE EE EE V+E EE EE EE EE EE EE
Sbjct: 968 EENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENV 1027
Query: 659 EEI 661
EE+
Sbjct: 1028 EEV 1030
Score = 45.2 bits (106), Expect = 1e-04
Identities = 30/73 (41%), Positives = 38/73 (52%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EN+ + + E EE EE EE EE EE EE EE +EE EE EE EE +EE
Sbjct: 981 ENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEE 1040
Query: 649 EEEEVRGGGKEEI 661
EE+ +E +
Sbjct: 1041 NVEEIEENAEENV 1053
Score = 45.2 bits (106), Expect = 1e-04
Identities = 31/73 (42%), Positives = 36/73 (49%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EN+ + + E EE EE EE EE EE EE EE EE EE EE +EE EE
Sbjct: 985 ENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVEEVEENVEEYDEENVEE 1044
Query: 649 EEEEVRGGGKEEI 661
EE +E I
Sbjct: 1045 IEENAEENVEENI 1057
Score = 44.8 bits (105), Expect = 2e-04
Identities = 27/54 (50%), Positives = 29/54 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + EE EE EE EE EE EE V+E EE EE EE EE EE EE
Sbjct: 956 EEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEE 1009
Score = 44.4 bits (104), Expect = 2e-04
Identities = 27/54 (50%), Positives = 28/54 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EE EE EE EE EE EE V+E EE EE EE EE EE EE
Sbjct: 960 EENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEE 1013
Score = 44.0 bits (103), Expect = 2e-04
Identities = 27/54 (50%), Positives = 28/54 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EE EE EE EE EE EE V+E EE EE EE EE EE EE
Sbjct: 964 EENVEENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEE 1017
Score = 44.0 bits (103), Expect = 2e-04
Identities = 31/74 (41%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE-EEEVQEEEEEEEEEEEEEEEEEEEE 647
EN+ + + E EE EE EE EE EE EE V+E EE EE EE +EE E
Sbjct: 969 ENVEENVEENVEENVEENVEENVEENVEENVEENIEENVEENVEENIEENVEEYDEENVE 1028
Query: 648 EEEEEVRGGGKEEI 661
E EE V +E +
Sbjct: 1029 EVEENVEEYDEENV 1042
Score = 44.0 bits (103), Expect = 3e-04
Identities = 27/54 (50%), Positives = 30/54 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + EE EE+ EE EE EE EE V+E EE EE EE EE EE EE
Sbjct: 948 EEDAEENVEEDAEENVEENVEENVEENVEENVEENVEENVEENVEENVEENVEE 1001
Score = 44.0 bits (103), Expect = 3e-04
Identities = 29/75 (38%), Positives = 37/75 (49%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ +E +E + + + + E EE EE EE EE EE EE +E EE EE E
Sbjct: 1018 NVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEENIE 1077
Query: 639 EEEEEEEEEEEEEEV 653
E EE EE EE V
Sbjct: 1078 ENIEENVEENVEENV 1092
Score = 42.9 bits (100), Expect = 6e-04
Identities = 31/75 (41%), Positives = 38/75 (50%), Gaps = 2/75 (2%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEE--EEEEEEVQEEEEEEEEEE 637
++ + EN+ ++ E +EE EE EE EE EE EE EE EE EE EE
Sbjct: 1016 EENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEIEEN 1075
Query: 638 EEEEEEEEEEEEEEE 652
EE EE EE EE
Sbjct: 1076 IEENIEENVEENVEE 1090
Score = 40.9 bits (95), Expect = 0.003
Identities = 29/62 (46%), Positives = 32/62 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E EE EE +EE EE EE EE +E EE EE EE EE EE EE +E
Sbjct: 1013 ENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEI 1072
Query: 659 EE 660
EE
Sbjct: 1073 EE 1074
Score = 40.9 bits (95), Expect = 0.003
Identities = 30/80 (37%), Positives = 40/80 (50%), Gaps = 1/80 (1%)
Query: 573 KVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
K K D ++ S I + I LI + + + E E +E E EE+ EE V+E+ EE
Sbjct: 903 KKAKKKDAKDL-SGNIAHEINLINKELKNQNENVPEHLKEHAEANIEEDAEENVEEDAEE 961
Query: 633 EEEEEEEEEEEEEEEEEEEE 652
EE EE EE EE EE
Sbjct: 962 NVEENVEENVEENVEENVEE 981
Score = 40.5 bits (94), Expect = 0.003
Identities = 28/62 (45%), Positives = 34/62 (54%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
ENI + + + E EE EE EE +EE EE EE + EE EE EE +EE EE
Sbjct: 1013 ENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEENVEEI 1072
Query: 649 EE 650
EE
Sbjct: 1073 EE 1074
Score = 40.2 bits (93), Expect = 0.004
Identities = 28/63 (44%), Positives = 34/63 (53%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EN+ + I E +EE EE EE EE +EE EE + EE EE EE EE +EE
Sbjct: 1009 ENVEENIEENVEEYDEENVEEVEENVEEYDEENVEEIEENAEENVEENIEENIEEYDEEN 1068
Query: 649 EEE 651
EE
Sbjct: 1069 VEE 1071
Score = 37.5 bits (86), Expect = 0.030
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
G +E E+ EEE + EEE +E V+E ++ E++ ++E E + E V
Sbjct: 430 GSEDESVEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDESGEHQSVNEIVEEQS 489
Query: 658 KEEI 661
E
Sbjct: 490 VNEH 493
Score = 35.1 bits (80), Expect = 0.16
Identities = 19/63 (30%), Positives = 33/63 (52%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
E+E E+ EEE + EEE +E EE ++ E++ ++E E + EE S++
Sbjct: 432 EDESVEDNEEEHSGDANEEELSVDEHVEEHNADDSGEQQSDDESGEHQSVNEIVEEQSVN 491
Query: 665 FYV 667
+V
Sbjct: 492 EHV 494
Score = 34.4 bits (78), Expect = 0.26
Identities = 25/73 (34%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
DE G + N I + + E EE + E+E +E EE V E EE++ +E E
Sbjct: 473 DESGEHQSVNEI-VEEQSVNEHVEEPTVADIVEQETVDEHVEEPAVDENEEQQTADEHVE 531
Query: 641 EEEEEEEEEEEEV 653
E EE EEE+
Sbjct: 532 EPTIAEEHVEEEI 544
Score = 33.2 bits (75), Expect = 0.55
Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 3/79 (3%)
Query: 574 VWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE---EEEVQEEE 630
V + S + + P + +I++ E EE +E EE++ +E EE EE V+EE
Sbjct: 485 VEEQSVNEHVEEPTVADIVEQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEEHVEEEI 544
Query: 631 EEEEEEEEEEEEEEEEEEE 649
EE EE + +++ E
Sbjct: 545 STAEEHIEEPASDVQQDSE 563
Score = 32.8 bits (74), Expect = 0.74
Identities = 23/86 (26%), Positives = 35/86 (40%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ SD + + I++ E EE + E+E +E EE + EE++ +E
Sbjct: 469 QQSDDESGEHQSVNEIVEEQSVNEHVEEPTVADIVEQETVDEHVEEPAVDENEEQQTADE 528
Query: 636 EEEEEEEEEEEEEEEEEVRGGGKEEI 661
EE EE EEE EE
Sbjct: 529 HVEEPTIAEEHVEEEISTAEEHIEEP 554
Score = 31.7 bits (71), Expect = 1.9
Identities = 21/74 (28%), Positives = 31/74 (41%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
D E S Q + E+ E EE + E+E +E V+E +E EE++
Sbjct: 465 DSGEQQSDDESGEHQSVNEIVEEQSVNEHVEEPTVADIVEQETVDEHVEEPAVDENEEQQ 524
Query: 639 EEEEEEEEEEEEEE 652
+E EE EE
Sbjct: 525 TADEHVEEPTIAEE 538
Score = 31.3 bits (70), Expect = 2.4
Identities = 19/66 (28%), Positives = 31/66 (46%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E+E +E EE +E EE++ +E + EE EEE EE EE +V+ +
Sbjct: 504 EQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEEHVEEEISTAEEHIEEPASDVQQDSE 563
Query: 659 EEISLH 664
++
Sbjct: 564 AAPTIE 569
Score = 29.8 bits (66), Expect = 6.0
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ ++ + +E EE +E EE++ +E EE EE EEE EE EE
Sbjct: 497 PTVADIVEQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEEHVEEEISTAEEHIEEPAS 556
Query: 649 EEEE 652
+ ++
Sbjct: 557 DVQQ 560
Score = 29.4 bits (65), Expect = 7.5
Identities = 16/53 (30%), Positives = 26/53 (49%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ E++ ++E E + E EE+ V E EE + E+E +E EE V
Sbjct: 465 DSGEQQSDDESGEHQSVNEIVEEQSVNEHVEEPTVADIVEQETVDEHVEEPAV 517
Score = 29.4 bits (65), Expect = 7.6
Identities = 19/62 (30%), Positives = 28/62 (45%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE + E+E +E EE +E +E++ +E EE EE EEE +E
Sbjct: 495 EEPTVADIVEQETVDEHVEEPAVDENEEQQTADEHVEEPTIAEEHVEEEISTAEEHIEEP 554
Query: 661 IS 662
S
Sbjct: 555 AS 556
>gnl|CDD|219924 pfam08597, eIF3_subunit, Translation initiation factor eIF3
subunit. This is a family of proteins which are
subunits of the eukaryotic translation initiation factor
3 (eIF3). In yeast it is called Hcr1. The Saccharomyces
cerevisiae protein eIF3j (HCR1) has been shown to be
required for processing of 20S pre-rRNA and binds to 18S
rRNA and eIF3 subunits Rpg1p and Prt1p.
Length = 242
Score = 49.7 bits (119), Expect = 2e-06
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 12/67 (17%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEE------------VQEEEEEEEEEEEEEEEEEE 645
E E+++ ++ +EEE+EE+EEE+ + ++E+E+ + E+EE+ E E
Sbjct: 26 DEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELE 85
Query: 646 EEEEEEE 652
E+ E+E
Sbjct: 86 EDTPEDE 92
Score = 44.6 bits (106), Expect = 6e-05
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 16/68 (23%)
Query: 601 EEEEEEEEEEEEEEEE-------------EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+EEE+EE+EEE+ + EE+E+ + E +E+ E EE+ E+E E+
Sbjct: 38 DEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKL 97
Query: 648 ---EEEEE 652
+ +EE
Sbjct: 98 RLRKLQEE 105
Score = 43.1 bits (102), Expect = 2e-04
Identities = 16/58 (27%), Positives = 37/58 (63%), Gaps = 9/58 (15%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEE---------EEEEEEEEEEEEEEEEEEVR 654
++E+E+++ ++ +EEE+EE +EE+ + + + EE+E+ + E+EE+ +R
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLR 82
Score = 42.7 bits (101), Expect = 2e-04
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 13/66 (19%)
Query: 599 EREEEEEEEEEEEE-------------EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E +EE+EEE+ + EE+E+ + E+EE+ E EE+ E+E E+
Sbjct: 40 EEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLRELEEDTPEDELAEKLRL 99
Query: 646 EEEEEE 651
+ +EE
Sbjct: 100 RKLQEE 105
Score = 35.0 bits (81), Expect = 0.082
Identities = 19/65 (29%), Positives = 36/65 (55%), Gaps = 19/65 (29%)
Query: 618 EEEEEEEEVQE--EEEEEEEEEEEE-----------------EEEEEEEEEEEEVRGGGK 658
++E+E+++V++ +EEE+EE+EEE+ EE+E+ + E+EE
Sbjct: 25 DDEDEDDDVKDSWDEEEDEEKEEEKAKVAAKAKAKKALKAKIEEKEKAKREKEEKGLREL 84
Query: 659 EEISL 663
EE +
Sbjct: 85 EEDTP 89
Score = 33.5 bits (77), Expect = 0.28
Identities = 11/37 (29%), Positives = 21/37 (56%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
+ + + E+EE+ E EE+ E+E E+ + +EE
Sbjct: 69 KEKAKREKEEKGLRELEEDTPEDELAEKLRLRKLQEE 105
>gnl|CDD|221203 pfam11748, DUF3306, Protein of unknown function (DUF3306). This
family of proteobacterial species proteins has no known
function.
Length = 115
Score = 46.5 bits (111), Expect = 2e-06
Identities = 19/61 (31%), Positives = 24/61 (39%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
RR EE E E EEE +EEEE E E+EE EE + + +
Sbjct: 8 RRKLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPGS 67
Query: 656 G 656
Sbjct: 68 D 68
Score = 42.3 bits (100), Expect = 7e-05
Identities = 15/54 (27%), Positives = 21/54 (38%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E E EEE EEE + E E+EE EE + + + +
Sbjct: 17 EPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLPDPDTLTPGSDFS 70
Score = 42.3 bits (100), Expect = 7e-05
Identities = 20/54 (37%), Positives = 23/54 (42%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
R R + EE E E EEE EEEEE E E+EE EE +
Sbjct: 5 RWSRRKLAVRAEEPAEPAETAEEEAAAAAPAPAPEEEEEAELEDEELLEELDLP 58
>gnl|CDD|220648 pfam10243, MIP-T3, Microtubule-binding protein MIP-T3. This
protein, which interacts with both microtubules and
TRAF3 (tumour necrosis factor receptor-associated factor
3), is conserved from worms to humans. The N-terminal
region is the microtubule binding domain and is
well-conserved; the C-terminal 100 residues, also
well-conserved, constitute the coiled-coil region which
binds to TRAF3. The central region of the protein is
rich in lysine and glutamic acid and carries KKE motifs
which may also be necessary for tubulin-binding, but
this region is the least well-conserved.
Length = 506
Score = 50.3 bits (120), Expect = 2e-06
Identities = 18/62 (29%), Positives = 42/62 (67%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+EEE+E+E+ +EE+++++E+ +E ++ + +EE +E+ +E+E+E+E++V
Sbjct: 100 NESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
Query: 659 EE 660
E
Sbjct: 160 RE 161
Score = 49.5 bits (118), Expect = 4e-06
Identities = 17/58 (29%), Positives = 42/58 (72%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ + + +EE+++++E+ +EE ++ + +EE +E+ +E+E+E+E++ EE + EEE +
Sbjct: 108 KEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKK 165
Score = 48.7 bits (116), Expect = 7e-06
Identities = 19/56 (33%), Positives = 43/56 (76%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+EEE+E+E+ +EE+++++E+ +EE + ++ +EE +E+ +E+E+E+E++ EE
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEE 156
Score = 48.3 bits (115), Expect = 1e-05
Identities = 19/59 (32%), Positives = 43/59 (72%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
G+ EE+E+E+ +EE+++++E+ +EE ++ + +EE +E+ +E+E+E+E++ EE
Sbjct: 101 ESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRD 159
Score = 48.0 bits (114), Expect = 1e-05
Identities = 19/64 (29%), Positives = 43/64 (67%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E +++++E+ +EE ++ + +EE +E+ +E+E+E+E++ EE + EEE++ E VR +
Sbjct: 115 EEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSR 174
Query: 659 EEIS 662
+
Sbjct: 175 PKKP 178
Score = 46.8 bits (111), Expect = 3e-05
Identities = 18/63 (28%), Positives = 42/63 (66%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+E + E +EEE+E+E+ +EE+++++ + +EE ++ + +EE +E+ +E+E+ +
Sbjct: 94 PAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKK 153
Query: 658 KEE 660
EE
Sbjct: 154 VEE 156
Score = 46.4 bits (110), Expect = 4e-05
Identities = 15/56 (26%), Positives = 36/56 (64%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ +++E+ +EE ++ + +EE +E+ +E ++E+E++ EE + EEE++ E
Sbjct: 116 EKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRA 171
Score = 43.7 bits (103), Expect = 2e-04
Identities = 17/70 (24%), Positives = 41/70 (58%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + +E+E+E+E++ EE + EEE++ E V+ + ++ +++ +++E EEE+
Sbjct: 136 EAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEK 195
Query: 653 VRGGGKEEIS 662
R +E +
Sbjct: 196 QRQAAREAVK 205
Score = 43.7 bits (103), Expect = 3e-04
Identities = 15/59 (25%), Positives = 36/59 (61%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ E+ +EE ++ + +EE +E+ +E+E+ +E++ EE + EEE++ E + +
Sbjct: 119 KKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKK 177
Score = 42.6 bits (100), Expect = 7e-04
Identities = 16/62 (25%), Positives = 39/62 (62%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ + +E + E +EEE+E+E+ +EE ++++E+ +EE ++ + +EE +E+ +
Sbjct: 90 AKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKE 149
Query: 659 EE 660
+E
Sbjct: 150 KE 151
Score = 42.2 bits (99), Expect = 8e-04
Identities = 14/57 (24%), Positives = 35/57 (61%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ + + +EE ++ + +EE +E+ +E+E ++E++ EE + EEE++ E +
Sbjct: 118 KKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSR 174
Score = 42.2 bits (99), Expect = 8e-04
Identities = 14/62 (22%), Positives = 33/62 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ +EE +E+ +E+E+E+E++ EE EEE++ E + ++ +++ +
Sbjct: 131 RKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEP 190
Query: 659 EE 660
E
Sbjct: 191 PE 192
Score = 41.8 bits (98), Expect = 0.001
Identities = 16/65 (24%), Positives = 34/65 (52%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ E+E++ EE + EEE++ E + + +++ +++E EEE++ + E
Sbjct: 146 KEKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVK 205
Query: 656 GGKEE 660
G EE
Sbjct: 206 GKPEE 210
Score = 41.8 bits (98), Expect = 0.001
Identities = 16/72 (22%), Positives = 42/72 (58%), Gaps = 7/72 (9%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEE-------EEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++ ++E+ +EE ++ + +EE +E E+E+E++V+E + EEE++ E + +
Sbjct: 117 KKKKKEKPKEEPKDRKPKEEAKEKRPPKEKEKEKEKKVEEPRDREEEKKRERVRAKSRPK 176
Query: 649 EEEEVRGGGKEE 660
+ + + K++
Sbjct: 177 KPPKKKPPNKKK 188
Score = 41.0 bits (96), Expect = 0.002
Identities = 14/67 (20%), Positives = 34/67 (50%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ + ++ EE + EEE++ E + + +++ +++E EEE++ + E V+G
Sbjct: 147 EKEKEKKVEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKG 206
Query: 656 GGKEEIS 662
+E
Sbjct: 207 KPEEPDV 213
Score = 40.6 bits (95), Expect = 0.002
Identities = 16/70 (22%), Positives = 41/70 (58%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++ + +G + + + +E + E +EEE+E+ Q +EE+++++E+ +EE ++ + +E
Sbjct: 76 AVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKKEKPKEEPKDRKPKE 135
Query: 651 EEVRGGGKEE 660
E +E
Sbjct: 136 EAKEKRPPKE 145
Score = 39.5 bits (92), Expect = 0.005
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
+REEE++ E + ++ +++ ++E EEE++ + E + + EE +V
Sbjct: 157 PRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEE 216
Query: 657 GKEE 660
++E
Sbjct: 217 REKE 220
Score = 39.1 bits (91), Expect = 0.007
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
R R ++ +++ +++E EEE++ + +E + + EE + EE E+EE++ +
Sbjct: 170 RAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEEREKEEDDGK 225
Score = 37.6 bits (87), Expect = 0.023
Identities = 23/101 (22%), Positives = 37/101 (36%), Gaps = 12/101 (11%)
Query: 569 RPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
R K T QD G +I + +I G++ E+E++E E + + E +
Sbjct: 298 RVKRKEIVTVLQDAQGVGKIVS--NVILEGKKSEDEDDENFVVEAAAQAPDIVAGGEDEA 355
Query: 629 EEEE----------EEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E+ E E ++E E E E KE
Sbjct: 356 EDGEQQGGLVQKILETKKEYETGSGSASPGETEASSAAKKE 396
Score = 37.2 bits (86), Expect = 0.025
Identities = 12/65 (18%), Positives = 30/65 (46%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EEE++ E + ++ +++ +++E EEE++ + E + + EE +E
Sbjct: 159 DREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDVNEERE 218
Query: 660 EISLH 664
+
Sbjct: 219 KEEDD 223
Score = 35.6 bits (82), Expect = 0.078
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 11/76 (14%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE-----------EEEEEEE 644
R+ EEE++ E + ++ +++ +++E EEE+ + EE +
Sbjct: 154 VEEPRDREEEKKRERVRAKSRPKKPPKKKPPNKKKEPPEEEKQRQAAREAVKGKPEEPDV 213
Query: 645 EEEEEEEEVRGGGKEE 660
EE E+EE G +E
Sbjct: 214 NEEREKEEDDGKDRET 229
Score = 29.5 bits (66), Expect = 7.9
Identities = 13/62 (20%), Positives = 34/62 (54%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
L + E + +E + E+ + + + +E + E +EEE+E+E+ +EE+++++
Sbjct: 62 ALAKCAESKLSSDEAVKRVEKGGSKGPAAKTKPAKEPKNESGKEEEKEKEQVKEEKKKKK 121
Query: 653 VR 654
+
Sbjct: 122 EK 123
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin. Nucleoplasmins are also
known as chromatin decondensation proteins. They bind to
core histones and transfer DNA to them in a reaction
that requires ATP. This is thought to play a role in the
assembly of regular nucleosomal arrays.
Length = 146
Score = 47.3 bits (113), Expect = 2e-06
Identities = 16/32 (50%), Positives = 27/32 (84%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE+ +++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEES 140
Score = 46.9 bits (112), Expect = 3e-06
Identities = 17/31 (54%), Positives = 27/31 (87%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE+E ++EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 46.5 bits (111), Expect = 5e-06
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
EE+E +++EE+EEEE++EE +E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 46.2 bits (110), Expect = 7e-06
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
EE+E +++EE+EEEE++EE+++E+ EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 46.2 bits (110), Expect = 7e-06
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
EE+E +++EE+EEEE++EE+++E + EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.8 bits (109), Expect = 8e-06
Identities = 15/31 (48%), Positives = 27/31 (87%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
EE+E +++EE+ +EE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.8 bits (109), Expect = 8e-06
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
EE+E +++EE +EEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.8 bits (109), Expect = 8e-06
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE+E + EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 1e-05
Identities = 15/31 (48%), Positives = 27/31 (87%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
EE+E +++ ++EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 1e-05
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
EE+E +++EE+EEEE EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.4 bits (108), Expect = 1e-05
Identities = 15/30 (50%), Positives = 25/30 (83%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQ 627
E +++EE+EEEE++EE+++E+E EEEE
Sbjct: 112 DESDDDEEDEEEEDDEEDDDEDESEEEESP 141
Score = 45.4 bits (108), Expect = 1e-05
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
EE+E +++EE+EEEE++EE+++ E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.0 bits (107), Expect = 1e-05
Identities = 16/31 (51%), Positives = 26/31 (83%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
EE+E +++EE+EEE +EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 45.0 bits (107), Expect = 1e-05
Identities = 15/32 (46%), Positives = 26/32 (81%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
L+ E E +++EE+EEEE++EE+++E+E EE
Sbjct: 106 LVASEEDESDDDEEDEEEEDDEEDDDEDESEE 137
Score = 45.0 bits (107), Expect = 2e-05
Identities = 17/31 (54%), Positives = 26/31 (83%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE+E +EE+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 44.2 bits (105), Expect = 3e-05
Identities = 16/31 (51%), Positives = 27/31 (87%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EE+E ++ +E+EEEE++EE+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 44.2 bits (105), Expect = 3e-05
Identities = 17/33 (51%), Positives = 28/33 (84%), Gaps = 2/33 (6%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
EE+E +++EE+EEEE++EE+ ++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDEED--DDEDESEEEE 139
Score = 44.2 bits (105), Expect = 3e-05
Identities = 17/33 (51%), Positives = 28/33 (84%), Gaps = 2/33 (6%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
EE+E +++EE+EEEE++E E+++E+E EEEE
Sbjct: 109 SEEDESDDDEEDEEEEDDE--EDDDEDESEEEE 139
Score = 41.9 bits (99), Expect = 2e-04
Identities = 14/30 (46%), Positives = 26/30 (86%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
E +E +++EE+EEEE++EE+++E+E E +E
Sbjct: 110 EEDESDDDEEDEEEEDDEEDDDEDESEEEE 139
Score = 41.5 bits (98), Expect = 2e-04
Identities = 13/30 (43%), Positives = 25/30 (83%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ V EE+E +++EE+EEEE++EE+++E+
Sbjct: 104 QHLVASEEDESDDDEEDEEEEDDEEDDDED 133
>gnl|CDD|185618 PTZ00438, PTZ00438, gamete antigen 27/25-like protein; Provisional.
Length = 374
Score = 49.7 bits (118), Expect = 3e-06
Identities = 26/65 (40%), Positives = 45/65 (69%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ +I + E E ++EEEE+E+ EE EE EE E V+EE +++E+ E+++E+E + E +E
Sbjct: 92 GLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDE 151
Query: 651 EEVRG 655
E+ G
Sbjct: 152 NELAG 156
Score = 46.6 bits (110), Expect = 3e-05
Identities = 23/59 (38%), Positives = 41/59 (69%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++ + + EEE ++EEEE+E+ EE EE EEV+ EEE +++E+ E+++E+E + E
Sbjct: 90 LEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAE 148
Score = 44.3 bits (104), Expect = 2e-04
Identities = 27/61 (44%), Positives = 40/61 (65%), Gaps = 4/61 (6%)
Query: 597 RGEREEEEEEEEEEEEEEEEE----EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
RG ++EEEE+E+ EE EE EE EEE +++E E+++E+E + E +E E E EE
Sbjct: 103 RGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYIIEE 162
Query: 653 V 653
V
Sbjct: 163 V 163
Score = 43.5 bits (102), Expect = 3e-04
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++EEEE+E+ EE EE EE E EEE ++E+ E+++E+E + E +E E E
Sbjct: 106 QKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYI 159
Score = 42.7 bits (100), Expect = 4e-04
Identities = 23/52 (44%), Positives = 37/52 (71%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EEE ++EEEE+E+ EE++E EE E EEE +++E+ E+++E+E G E
Sbjct: 100 EEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDE 151
Score = 42.4 bits (99), Expect = 5e-04
Identities = 23/54 (42%), Positives = 36/54 (66%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EEE ++EEEE+E+ EE E EE E EEE +++E+ E+++E+E + G E
Sbjct: 100 EEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENE 153
Score = 39.7 bits (92), Expect = 0.004
Identities = 22/61 (36%), Positives = 40/61 (65%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFY 666
EEE ++EEEE+E+ EE + EE E EEE +++E+ E+++E+E G + E++ +
Sbjct: 100 EEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYI 159
Query: 667 V 667
+
Sbjct: 160 I 160
Score = 34.3 bits (78), Expect = 0.20
Identities = 22/51 (43%), Positives = 30/51 (58%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ + E + E E + EEE Q+EEEE+E+ EE EE EE E EEE
Sbjct: 80 DKSDNENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEE 130
Score = 33.1 bits (75), Expect = 0.49
Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ + E + E E + EEE + +EEE+E+ EE EE EE E EEE ++
Sbjct: 80 DKSDNENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDD 133
Score = 32.0 bits (72), Expect = 1.0
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
++ + E + E E V+ EEE ++EEEE+E+ EE EE EEV +E
Sbjct: 80 DKSDNENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEE 130
Score = 31.2 bits (70), Expect = 1.7
Identities = 20/55 (36%), Positives = 32/55 (58%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ + E + E E + EEE ++EE ++E+ EE EE EE E EEE +++E
Sbjct: 81 KSDNENDVELEGLNIIVKNEEERGTQKEEEEDEDVEEIEEVEEVEVVEEEYDDDE 135
Score = 30.4 bits (68), Expect = 3.1
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E EE E EEE +++E+ E+++E+E + + +E E E EE +++
Sbjct: 120 EVEEVEVVEEEYDDDEDSEKDDEKESDAEGDENELAGEYIIEEVDDD 166
>gnl|CDD|235795 PRK06402, rpl12p, 50S ribosomal protein L12P; Reviewed.
Length = 106
Score = 46.1 bits (110), Expect = 3e-06
Identities = 16/29 (55%), Positives = 19/29 (65%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
EE++EEEEEEEE+EE EEE G
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEEEAAAG 100
Score = 45.7 bits (109), Expect = 4e-06
Identities = 15/32 (46%), Positives = 18/32 (56%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
EE++EEEEEEEE+EE EE G
Sbjct: 69 AAAAAAAAAEEKKEEEEEEEEKEESEEEAAAG 100
Score = 44.9 bits (107), Expect = 7e-06
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
EE++EEEEEEEE+EE EEE
Sbjct: 72 AAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 43.4 bits (103), Expect = 3e-05
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEE 625
EE++EEEEEEEE+EE EE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEE 95
Score = 43.0 bits (102), Expect = 4e-05
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 42.6 bits (101), Expect = 5e-05
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 42.2 bits (100), Expect = 6e-05
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
EE++EEEEEEEE+E EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.9 bits (99), Expect = 8e-05
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+E++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 41.1 bits (97), Expect = 2e-04
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
EE++EE +EEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 40.7 bits (96), Expect = 2e-04
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E ++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 40.3 bits (95), Expect = 3e-04
Identities = 15/29 (51%), Positives = 17/29 (58%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
EE +EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 40.3 bits (95), Expect = 3e-04
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
EE+ +EEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 40.3 bits (95), Expect = 3e-04
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAAA 99
Score = 40.3 bits (95), Expect = 3e-04
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
EE++EEEEEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEE--SEEEAAA 99
Score = 40.3 bits (95), Expect = 3e-04
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
EE++EEEEEEEE+ EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEEEEK--EESEEEAAA 99
Score = 40.3 bits (95), Expect = 3e-04
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
EE++EEEEEE EE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEEEEE--EEKEESEEEAAA 99
Score = 40.3 bits (95), Expect = 3e-04
Identities = 15/31 (48%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
EE++EEE EEEEE+EE EEE
Sbjct: 71 AAAAAAAEEKKEEE--EEEEEKEESEEEAAA 99
Score = 39.6 bits (93), Expect = 5e-04
Identities = 14/24 (58%), Positives = 17/24 (70%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEE 621
E++EEEEEEEE+EE EEE
Sbjct: 76 AAEEKKEEEEEEEEKEESEEEAAA 99
Score = 30.7 bits (70), Expect = 0.60
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 635 EEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
EE++EEEEEEE + +EE +
Sbjct: 71 AAAAAAAEEKKEEEEEEEEKEESEEEAA 98
>gnl|CDD|222581 pfam14181, YqfQ, YqfQ-like protein. The YqfQ-like protein family
includes the B. subtilis YqfQ protein, also known as
VrrA, which is functionally uncharacterized. This family
of proteins is found in bacteria. Proteins in this
family are typically between 146 and 237 amino acids in
length. There are two conserved sequence motifs: QYGP
and PKLY.
Length = 155
Score = 47.1 bits (112), Expect = 3e-06
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 5/73 (6%)
Query: 586 PRIEN---IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
P + N + ++ R E ++EEEE EEE +E E+E+ E + E +E+++ E + +
Sbjct: 76 PLVRNLPAMWKIFR--ELSSSDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPK 133
Query: 643 EEEEEEEEEEVRG 655
E+E+ + E +
Sbjct: 134 TEKEKPKTEPKKP 146
Score = 40.1 bits (94), Expect = 0.001
Identities = 18/56 (32%), Positives = 32/56 (57%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
++EEEE EEE +E E+E E + E +E+++ E + + E+E+ K + S
Sbjct: 94 SDDEEEETEEESTDETEQEDPPETKTESKEKKKREVPKPKTEKEKPKTEPKKPKPS 149
Score = 32.0 bits (73), Expect = 0.51
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++EEEE EEE +E E+E+ E + K++
Sbjct: 93 SSDDEEEETEEESTDETEQEDPPETKTESKEKKK 126
>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in
mRNA processing and transport [Signal transduction
mechanisms / RNA processing and modification].
Length = 388
Score = 49.5 bits (118), Expect = 3e-06
Identities = 19/74 (25%), Positives = 35/74 (47%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+ E+I +++ E++E + EE +EE E+E E +E ++E E E E
Sbjct: 314 RIKELADFGDYYEDIFEVVEVVEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLE 373
Query: 637 EEEEEEEEEEEEEE 650
+ ++ E E E
Sbjct: 374 VQVDDLAERLAETE 387
Score = 46.5 bits (110), Expect = 3e-05
Identities = 28/101 (27%), Positives = 42/101 (41%), Gaps = 14/101 (13%)
Query: 561 NTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEE-------EEEEEEEEE 613
N + I +QD + ++ L R G R +E E+ E E
Sbjct: 282 NERRGGIILDIS--LNEFEQD-----AVPLLVDLERNGNRIKELADFGDYYEDIFEVVEV 334
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E++E + EE +EE E+E E +E EE E E EV+
Sbjct: 335 VEKQEGDVVTEESTDEESEDEVEIDESVIEEVAEMELLEVQ 375
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2. PPP4R2 (protein phosphatase 4 core
regulatory subunit R2) is the regulatory subunit of the
histone H2A phosphatase complex. It has been shown to
confer resistance to the anticancer drug cisplatin in
yeast, and may confer resistance in higher eukaryotes.
Length = 285
Score = 49.1 bits (117), Expect = 3e-06
Identities = 20/42 (47%), Positives = 36/42 (85%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++ ++EE+++++ + EE+E++E+EEEEE EEEEEEE+E+E
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 48.7 bits (116), Expect = 5e-06
Identities = 22/77 (28%), Positives = 47/77 (61%)
Query: 575 WKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+ D+++ E + + + + + ++ ++EE+++++ + V+E+E +E+
Sbjct: 209 DSSQDKNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKED 268
Query: 635 EEEEEEEEEEEEEEEEE 651
EEEEE EEEEEEE+E+E
Sbjct: 269 EEEEETEEEEEEEDEDE 285
Score = 48.3 bits (115), Expect = 6e-06
Identities = 20/42 (47%), Positives = 35/42 (83%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ ++EE+++++ + EE+E +E+EEEEE EEEEEEE+E+E
Sbjct: 244 NKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDEDE 285
Score = 45.2 bits (107), Expect = 5e-05
Identities = 19/52 (36%), Positives = 38/52 (73%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++ + + + ++ ++EE+++++ EE+E +E+EEEEE EEEEEEE+E
Sbjct: 232 SQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEEEDE 283
Score = 42.1 bits (99), Expect = 5e-04
Identities = 16/55 (29%), Positives = 34/55 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ +++ + + + ++ ++EE+ ++ + EE+E +E+EEEEE EEEEE
Sbjct: 226 SSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEEE 280
Score = 36.7 bits (85), Expect = 0.027
Identities = 16/64 (25%), Positives = 37/64 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E+E + +++ + + + ++ +EE+++++ + EE+E +E+EEEEE +
Sbjct: 220 EYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEEEEE 279
Query: 659 EEIS 662
EE
Sbjct: 280 EEDE 283
Score = 35.6 bits (82), Expect = 0.070
Identities = 15/58 (25%), Positives = 34/58 (58%), Gaps = 8/58 (13%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE--------EEEEEEEEEE 652
EE E+E + +++ + +V+ ++ ++EE+++++ + E+EEEEE EE
Sbjct: 219 EEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEKELKEDEEEEETEE 276
Score = 29.0 bits (65), Expect = 7.6
Identities = 8/52 (15%), Positives = 31/52 (59%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++ + EE E+E + +++ + + + ++ ++EE+++++ + EE+
Sbjct: 212 QDKNKSLEEYYEKESSDAAASQDDGPKGSDVKNKKSDDEEDDDQDGDYVEEK 263
>gnl|CDD|220271 pfam09507, CDC27, DNA polymerase subunit Cdc27. This protein forms
the C subunit of DNA polymerase delta. It carries the
essential residues for binding to the Pol1 subunit of
polymerase alpha, from residues 293-332, which are
characterized by the motif D--G--VT, referred to as the
DPIM motif. The first 160 residues of the protein form
the minimal domain for binding to the B subunit, Cdc1,
of polymerase delta, the final 10 C-terminal residues,
362-372, being the DNA sliding clamp, PCNA, binding
motif.
Length = 427
Score = 49.1 bits (117), Expect = 5e-06
Identities = 24/64 (37%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEV----QEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+E+E+ + ++ E+E+E+EE E V EEEE EE E ++EEE+EE
Sbjct: 287 TEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSP 346
Query: 655 GGGK 658
GG+
Sbjct: 347 DGGR 350
Score = 46.8 bits (111), Expect = 3e-05
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEE-EEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E+E+E+ + ++ E+E+E+EE E E EEEE EE E ++EEE+EE V
Sbjct: 287 TEEKEKEKRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSP 346
Query: 656 GG 657
G
Sbjct: 347 DG 348
Score = 44.8 bits (106), Expect = 1e-04
Identities = 22/70 (31%), Positives = 34/70 (48%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+R ++ E+E+E+EE E E EEEE +E E ++EEE+EE + RG
Sbjct: 294 KRKRLKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGRRRG 353
Query: 656 GGKEEISLHF 665
+ F
Sbjct: 354 RRRVMKKKTF 363
Score = 44.1 bits (104), Expect = 2e-04
Identities = 36/156 (23%), Positives = 62/156 (39%), Gaps = 14/156 (8%)
Query: 520 VAAKNPTTGTTPFKLCTPEDFKPFVTALMNSEWQSLWDNV----PNTNKLKTIRPSIKVW 575
++ + TT K K + ++ + K K V
Sbjct: 182 KKTQDTSKETTTEKTEGKTSVKAASLKRNPPKKSNIMSSFFKKKTKEKKEKKEASESTVK 241
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEE----------EEEEEEEEEEEEEEEEEE 625
+ S+++ I G E+E+E+E EEE EE+E+E+ + ++
Sbjct: 242 EESEEESGKRDVILEDESAEPTGLDEDEDEDEPKPSGERSDSEEETEEKEKEKRKRLKKM 301
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+++E+E+EE E E EEEE EE E K+E
Sbjct: 302 MEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEE 337
Score = 38.3 bits (89), Expect = 0.013
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+++ +E+E+EE E E EEEE EE E ++EEE+EE +
Sbjct: 298 LKKMMEDEDEDEEMEIVPESPVEEEESEEPEPPPLPKKEEEKEEVTVSPDGGR 350
>gnl|CDD|227458 COG5129, MAK16, Nuclear protein with HMG-like acidic region
[General function prediction only].
Length = 303
Score = 48.5 bits (115), Expect = 5e-06
Identities = 23/75 (30%), Positives = 38/75 (50%), Gaps = 9/75 (12%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ---------EEEEEEEEEEEEEEEEE 644
ER EEEEE + E E ++ E+E+ + + + E E EEEE E E
Sbjct: 196 RQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESE 255
Query: 645 EEEEEEEEVRGGGKE 659
+E+E+E+ +G ++
Sbjct: 256 SDEDEDEDNKGKIRK 270
Score = 34.6 bits (79), Expect = 0.14
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 16/72 (22%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE----------------EEEEEEEEEEE 648
E E+ ++E+E EEEEE + E ++ E+E E E EEEE
Sbjct: 192 EREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETSESEEEES 251
Query: 649 EEEEVRGGGKEE 660
E E E+
Sbjct: 252 SESESDEDEDED 263
Score = 33.1 bits (75), Expect = 0.38
Identities = 18/84 (21%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+D E + +++ + + + E E EEEE E E +E+E+E+ + + + + ++ +
Sbjct: 218 TDDSEKEKTKKKDLEKWLGSDQSMETSESEEEESSESESDEDEDEDNKGKIRKRKTDDAK 277
Query: 638 E--------EEEEEEEEEEEEEEV 653
+ E E+E E E+
Sbjct: 278 KSRKPHIHIEYEQERENEKIPAVQ 301
Score = 32.7 bits (74), Expect = 0.58
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
G+ E + E E+ ++E+E EEEEE + E E ++ E+E+ +++
Sbjct: 175 GDTPLNVREHLWNKAATEREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKD 230
Score = 29.2 bits (65), Expect = 7.8
Identities = 14/53 (26%), Positives = 30/53 (56%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E E+ ++E+E EEE + + E E ++ E+E+ ++++ E+ + E S
Sbjct: 192 EREKRQDEKERYVEEEEESDTELEAVTDDSEKEKTKKKDLEKWLGSDQSMETS 244
>gnl|CDD|216403 pfam01271, Granin, Granin (chromogranin or secretogranin).
Length = 585
Score = 49.2 bits (117), Expect = 5e-06
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 4/99 (4%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
K+ DE + R NI G + EE EE++ +EE + +E +E +
Sbjct: 199 KSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEEVKRSKERTHKGRSLPDESK 258
Query: 636 EE----EEEEEEEEEEEEEEEVRGGGKEEISLHFYVLYV 670
E+E EEE+EE+ +E RG + L +V
Sbjct: 259 RSGQLGLEDEAEEEKEEKGQESRGLSAVQTYLLRWVNAR 297
Score = 40.4 bits (94), Expect = 0.003
Identities = 11/67 (16%), Positives = 24/67 (35%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
RG + E E EE EE+E + +E++ + + + + + R
Sbjct: 299 RGRSQNRAERERSEESEEKELDRASPYQEIEITANLQIPPSDLIRMLRKGDGRKPRGRVE 358
Query: 657 GKEEISL 663
+ +
Sbjct: 359 EEGALEA 365
Score = 39.2 bits (91), Expect = 0.007
Identities = 13/67 (19%), Positives = 23/67 (34%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
R + E E EE EE+E + +E E+ + + + + + V
Sbjct: 301 RSQNRAERERSEESEEKELDRASPYQEIEITANLQIPPSDLIRMLRKGDGRKPRGRVEEE 360
Query: 657 GKEEISL 663
G E
Sbjct: 361 GALEAPE 367
Score = 38.4 bits (89), Expect = 0.011
Identities = 16/78 (20%), Positives = 26/78 (33%), Gaps = 14/78 (17%)
Query: 596 RRGEREEEEEEEEEEEEEEEEE--------------EEEEEEEEVQEEEEEEEEEEEEEE 641
R R E E EE EE+E + + +++ + + EEE
Sbjct: 301 RSQNRAERERSEESEEKELDRASPYQEIEITANLQIPPSDLIRMLRKGDGRKPRGRVEEE 360
Query: 642 EEEEEEEEEEEVRGGGKE 659
E E +E R +
Sbjct: 361 GALEAPEALDEKRELDLD 378
Score = 38.4 bits (89), Expect = 0.013
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
ER +E E+ +++E++ + E+V E+ EE EE++ +EE + +E
Sbjct: 192 ERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEEVKRSKE 245
Score = 38.1 bits (88), Expect = 0.014
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ E +E E+ +++E++ + E+ E+ EE EE++ +EEV+
Sbjct: 189 QKRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEEVK 241
Score = 38.1 bits (88), Expect = 0.015
Identities = 12/53 (22%), Positives = 29/53 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+++ E +E E+ +++E++ + + E+ E+ EE EE++ +EE
Sbjct: 187 SKQKRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEE 239
Score = 38.1 bits (88), Expect = 0.016
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 600 REEEEEEEEEEEEEEEEEEEEE---EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
RE +E E+ +++E++ + E+ V E+ EE EE++ +EE + +E
Sbjct: 191 RERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEEVKRSKERT 247
Score = 36.5 bits (84), Expect = 0.054
Identities = 12/58 (20%), Positives = 27/58 (46%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ +E E+ +++E++ + E E+ EE EE++ +EE + + R
Sbjct: 189 QKRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEEVKRSKER 246
Score = 35.7 bits (82), Expect = 0.080
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 20/104 (19%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE-------------- 622
T ++ + R L +R + E+E EEE+EE+ +E
Sbjct: 236 TQEEVKRSKERTHKGRSLPDESKRSGQLGLEDEAEEEKEEKGQESRGLSAVQTYLLRWVN 295
Query: 623 ------EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ E E EE EE+E + +E E
Sbjct: 296 ARGRGRSQNRAERERSEESEEKELDRASPYQEIEITANLQIPPS 339
Score = 33.4 bits (76), Expect = 0.38
Identities = 11/50 (22%), Positives = 25/50 (50%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++ E +E E+ +++E++ Q E+ E+ EE EE++
Sbjct: 187 SKQKRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQT 236
Score = 33.4 bits (76), Expect = 0.44
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
ERE+ +++E++ + E+ EE EE++ +EE + +E + R
Sbjct: 196 EREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQTQEEVKRSKERTHKGRSLPD 255
Query: 659 EE 660
E
Sbjct: 256 ES 257
Score = 33.0 bits (75), Expect = 0.50
Identities = 16/82 (19%), Positives = 27/82 (32%), Gaps = 19/82 (23%)
Query: 598 GEREEEEEEEE-------------------EEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
ER EE EE+E + + + + + EEE E E
Sbjct: 308 RERSEESEEKELDRASPYQEIEITANLQIPPSDLIRMLRKGDGRKPRGRVEEEGALEAPE 367
Query: 639 EEEEEEEEEEEEEEVRGGGKEE 660
+E+ E + + V K+
Sbjct: 368 ALDEKRELDLDHSRVFENSKDG 389
Score = 33.0 bits (75), Expect = 0.51
Identities = 11/55 (20%), Positives = 30/55 (54%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
G+ + + +++ E +E E+ +++E++ ++ E+ E+ EE EE++
Sbjct: 181 GKLDGQSKQKRERSDEREKSYQDDEDDTYRQNNIPYEDVVGGEDWNPIEEGEEDQ 235
Score = 32.7 bits (74), Expect = 0.74
Identities = 16/107 (14%), Positives = 31/107 (28%), Gaps = 7/107 (6%)
Query: 557 DNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEE------- 609
+ T+K +++ K ++ E Q R +
Sbjct: 242 RSKERTHKGRSLPDESKRSGQLGLEDEAEEEKEEKGQESRGLSAVQTYLLRWVNARGRGR 301
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
+ E E EE EE+ + +E E + + +R G
Sbjct: 302 SQNRAERERSEESEEKELDRASPYQEIEITANLQIPPSDLIRMLRKG 348
Score = 31.9 bits (72), Expect = 1.4
Identities = 17/86 (19%), Positives = 34/86 (39%), Gaps = 15/86 (17%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE---------------EEEVQE 628
+E + + G+ E + ++ EE +EE E++ Q
Sbjct: 395 QGAVLEALPNGLSVGDEGAEGKWNQQGPYFPNEENQEEARFRLPYYPGELSNPWEDKKQW 454
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ +EE +E E++ E EEE +
Sbjct: 455 KKSDEERKELYEDKFLEGEEENDYTL 480
Score = 31.1 bits (70), Expect = 2.3
Identities = 8/69 (11%), Positives = 23/69 (33%), Gaps = 1/69 (1%)
Query: 588 IENIIQLIRRGEREEEEEEEE-EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
I++ + + + + + EEE ++ E +E+ E + +
Sbjct: 324 PYQEIEITANLQIPPSDLIRMLRKGDGRKPRGRVEEEGALEAPEALDEKRELDLDHSRVF 383
Query: 647 EEEEEEVRG 655
E ++
Sbjct: 384 ENSKDGAVR 392
Score = 30.7 bits (69), Expect = 2.8
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 11/86 (12%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE---- 635
+D E ++ ++ R E+ EE+ + E E + + EE
Sbjct: 124 EDYETQQWEEEKLKHMKFPRRYEDNSEEKHSKRTNEIVEVFYNPQSQATLKSVFEEVGKL 183
Query: 636 -------EEEEEEEEEEEEEEEEEVR 654
E +E E+ +++E++
Sbjct: 184 DGQSKQKRERSDEREKSYQDDEDDTY 209
Score = 30.0 bits (67), Expect = 5.1
Identities = 10/56 (17%), Positives = 25/56 (44%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
R E + E+ ++ E+ + + E ++ E+EE+ + +E++E
Sbjct: 506 DRQYDEVQREDALLHYRKKSSEQPDFYDSEEKKRLPVGAEKEEDTANRQYRDEDKE 561
Score = 29.6 bits (66), Expect = 7.5
Identities = 11/60 (18%), Positives = 22/60 (36%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E ++ EEE+ + + E+ EE+ + E E + + + EE
Sbjct: 120 TDHSEDYETQQWEEEKLKHMKFPRRYEDNSEEKHSKRTNEIVEVFYNPQSQATLKSVFEE 179
Score = 29.2 bits (65), Expect = 8.1
Identities = 17/85 (20%), Positives = 26/85 (30%), Gaps = 24/85 (28%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE-------------------EEEEE 638
R EEE E E +E+ E + + V E ++ +E
Sbjct: 354 RGRVEEEGALEAPEALDEKRELDLDHSRVFENSKDGAVRAPQGAVLEALPNGLSVGDEGA 413
Query: 639 E-----EEEEEEEEEEEEEVRGGGK 658
E + EE +EE R
Sbjct: 414 EGKWNQQGPYFPNEENQEEARFRLP 438
>gnl|CDD|100110 cd05832, Ribosomal_L12p, Ribosomal protein L12p. This subfamily
includes archaeal L12p, the protein that is functionally
equivalent to L7/L12 in bacteria and the P1 and P2
proteins in eukaryotes. L12p is homologous to P1 and P2
but is not homologous to bacterial L7/L12. It is located
in the L12 stalk, with proteins L10, L11, and 23S rRNA.
L12p is the only protein in the ribosome to occur as
multimers, always appearing as sets of dimers. Recent
data indicate that most archaeal species contain six
copies of L12p (three homodimers), while eukaryotes have
four copies (two heterodimers), and bacteria may have
four or six copies (two or three homodimers), depending
on the species. The organization of proteins within the
stalk has been characterized primarily in bacteria,
where L7/L12 forms either two or three homodimers and
each homodimer binds to the extended C-terminal helix of
L10. L7/L12 is attached to the ribosome through L10 and
is the only ribosomal protein that does not directly
interact with rRNA. Archaeal L12p is believed to
function in a similar fashion. However, hybrid ribosomes
containing the large subunit from E. coli with an
archaeal stalk are able to bind archaeal and eukaryotic
elongation factors but not bacterial elongation factors.
In several mesophilic and thermophilic archaeal species,
the binding of 23S rRNA to protein L11 and to the
L10/L12p pentameric complex was found to be
temperature-dependent and cooperative.
Length = 106
Score = 45.2 bits (107), Expect = 6e-06
Identities = 17/30 (56%), Positives = 23/30 (76%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
EE+ EE+EEE+++EEE+EEEEEE G
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEEALAG 101
Score = 43.6 bits (103), Expect = 2e-05
Identities = 16/30 (53%), Positives = 22/30 (73%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
EE+ EE+EEE+++EEE+EEEEE G
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEEALAG 101
Score = 43.3 bits (102), Expect = 3e-05
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEE 625
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 41.7 bits (98), Expect = 8e-05
Identities = 16/25 (64%), Positives = 22/25 (88%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEE 623
EE+ EE+EEE+++EEE+EEEEEE
Sbjct: 73 AAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 41.7 bits (98), Expect = 9e-05
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEE 645
EE+ +E+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 41.7 bits (98), Expect = 1e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEE 646
EE EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 41.7 bits (98), Expect = 1e-04
Identities = 15/26 (57%), Positives = 21/26 (80%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEV 626
EE+ EE+EEE+++EEE+EEEEE
Sbjct: 72 AAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 41.3 bits (97), Expect = 2e-04
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E + EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 40.9 bits (96), Expect = 2e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEE 638
EE+ EE+EEE ++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 40.6 bits (95), Expect = 3e-04
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEE 633
EE+ EE+EEE+++EE +EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 40.6 bits (95), Expect = 3e-04
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEE 644
EE+ ++EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 40.2 bits (94), Expect = 3e-04
Identities = 15/27 (55%), Positives = 22/27 (81%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+E+ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.8 bits (93), Expect = 4e-04
Identities = 15/24 (62%), Positives = 21/24 (87%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEE 621
E + EE+EEE+++EEE+EEEEEE
Sbjct: 74 AEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.8 bits (93), Expect = 5e-04
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEE 630
EE+ EE+EEE+++EEE+E +EEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.8 bits (93), Expect = 5e-04
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEE 642
EE+ EE +EE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 5e-04
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEE 643
EE+ E +EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 6e-04
Identities = 16/27 (59%), Positives = 21/27 (77%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEE 637
EE+ EE+EEE+ +EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 6e-04
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEE 629
EE+ EE+EEE+++EEE+EE +EE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++ EE+EEE+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 39.4 bits (92), Expect = 7e-04
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEE 625
EE+ EE+EEE+++EEE+EEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEE 95
Score = 39.4 bits (92), Expect = 7e-04
Identities = 14/25 (56%), Positives = 20/25 (80%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEE 652
EE+ EE+EEE+++EEE+EEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEE 95
Score = 39.0 bits (91), Expect = 0.001
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEE 641
EE+ EE+ +E+++EEE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 38.6 bits (90), Expect = 0.001
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEE 632
EE+ EE+EEE+++EEE +EEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 38.6 bits (90), Expect = 0.001
Identities = 15/27 (55%), Positives = 21/27 (77%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEE 636
EE+ EE+EEE++ +EE+EEEEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 38.6 bits (90), Expect = 0.001
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEE 631
EE+ EE+EEE+++EEE+ +EEEE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEE 97
Score = 32.9 bits (75), Expect = 0.14
Identities = 11/28 (39%), Positives = 18/28 (64%)
Query: 634 EEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EE+ EE+EEE+++EE + +EE
Sbjct: 71 AAAAEEKAEEKEEEKKKEEEKEEEEEEA 98
>gnl|CDD|226894 COG4499, COG4499, Predicted membrane protein [Function unknown].
Length = 434
Score = 49.0 bits (117), Expect = 6e-06
Identities = 15/70 (21%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE--EEEEEEEEEEEEEEEE 646
+ +L++ ++ ++ ++ E ++E + EE E + +EE+ +EE E++++E+ +E++
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADEDK 424
Query: 647 EEEEEEVRGG 656
E+ +++ R
Sbjct: 425 EKRQKDERKK 434
Score = 47.1 bits (112), Expect = 2e-05
Identities = 20/92 (21%), Positives = 50/92 (54%), Gaps = 8/92 (8%)
Query: 561 NTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEE 620
T + ++ S+ D G R E + + ++ + ++ E ++E + EE E
Sbjct: 349 LTKLYEEVK--------SNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEA 400
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ +EE ++EE E++++E+ +E++E+ +++E
Sbjct: 401 KAKEEKLKQEENEKKQKEQADEDKEKRQKDER 432
Score = 46.3 bits (110), Expect = 4e-05
Identities = 16/62 (25%), Positives = 37/62 (59%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
G++ +E +E ++ ++ ++ E ++E EE E + +EE+ ++EE E++++E
Sbjct: 364 GDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQADED 423
Query: 658 KE 659
KE
Sbjct: 424 KE 425
Score = 39.8 bits (93), Expect = 0.005
Identities = 13/55 (23%), Positives = 33/55 (60%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++ +E +E ++ ++ +++ E ++E + EE E + +EE+ ++EE KE+
Sbjct: 365 DKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEENEKKQKEQ 419
Score = 37.9 bits (88), Expect = 0.016
Identities = 12/61 (19%), Positives = 31/61 (50%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EE + + ++ +E +E +++Q+ ++ E ++E + EE E + +E + +E
Sbjct: 352 LYEEVKSNTDLSGDKRQELLKEYNKKLQDYTKKLGEVKDETDASEEAEAKAKEEKLKQEE 411
Query: 660 E 660
Sbjct: 412 N 412
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457). This is
a family of uncharacterized proteins.
Length = 449
Score = 48.8 bits (116), Expect = 6e-06
Identities = 17/61 (27%), Positives = 45/61 (73%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
IR+ +E EEE EEE+++EE+++++++E+E ++++++E++E+E++++ ++
Sbjct: 38 IRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADD 97
Query: 655 G 655
G
Sbjct: 98 G 98
Score = 47.3 bits (112), Expect = 2e-05
Identities = 14/58 (24%), Positives = 43/58 (74%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+E EEE EEE+++EE+++++++E+ +++++++E++E+E++++ ++ G +
Sbjct: 43 KEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNE 100
Score = 46.9 bits (111), Expect = 3e-05
Identities = 15/65 (23%), Positives = 47/65 (72%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ EN I+ + + EE EEE+++EE+++++++E+E+++ +++E++E+E++++ ++
Sbjct: 33 KKENAIRKLGKEAEEEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDD 92
Query: 647 EEEEE 651
++
Sbjct: 93 SSADD 97
Score = 40.7 bits (95), Expect = 0.002
Identities = 12/53 (22%), Positives = 40/53 (75%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E EEE+++EE+++++++E+E++++++ E++E+E++++ ++ ++ E
Sbjct: 48 EAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNE 100
Score = 40.0 bits (93), Expect = 0.004
Identities = 14/50 (28%), Positives = 38/50 (76%), Gaps = 2/50 (4%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
+E EEE EEE +++EE+++++++E+E++++++++E+ ++ +LH
Sbjct: 43 KEAEEEAMEEE--DDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLH 90
Score = 39.6 bits (92), Expect = 0.004
Identities = 12/54 (22%), Positives = 40/54 (74%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EEE+++EE+++++++E+E+++++ +E++E+E++++ ++ ++ E
Sbjct: 47 EEAMEEEDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNE 100
Score = 36.1 bits (83), Expect = 0.059
Identities = 9/52 (17%), Positives = 38/52 (73%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E ++EE+++++++E+E++++++++E++ E++++ ++ ++ E + E
Sbjct: 53 EDDDEEDDDDDDDEDEDDDDDDDDEDDEDEDDDDSTLHDDSSADDGNETDNE 104
>gnl|CDD|130712 TIGR01651, CobT, cobaltochelatase, CobT subunit. This model
describes Pseudomonas denitrificans CobT gene product,
which is a cobalt chelatase subunit that functions in
cobalamin biosynthesis. Cobalamin (vitamin B12) can be
synthesized via several pathways, including an aerobic
pathway (found in Pseudomonas denitrificans) and an
anaerobic pathway (found in P. shermanii and Salmonella
typhimurium). These pathways differ in the point of
cobalt insertion during corrin ring formation. There are
apparently a number of variations on these two pathways,
where the major differences seem to be concerned with
the process of ring contraction. Confusion regarding the
functions of enzymes found in the aerobic vs. anaerobic
pathways has arisen because nonhomologous genes in these
different pathways were given the same gene symbols.
Thus, cobT in the aerobic pathway (P. denitrificans) is
not a homolog of cobT in the anaerobic pathway (S.
typhimurium). It should be noted that E. coli
synthesizes cobalamin only when it is supplied with the
precursor cobinamide, which is a complex intermediate.
Additionally, all E. coli cobalamin synthesis genes
(cobU, cobS and cobT) were named after their Salmonella
typhimurium homologs which function in the anaerobic
cobalamin synthesis pathway. This model describes the
aerobic cobalamin pathway Pseudomonas denitrificans CobT
gene product, which is a cobalt chelatase subunit, with
a MW ~70 kDa. The aerobic pathway cobalt chelatase is a
heterotrimeric, ATP-dependent enzyme that catalyzes
cobalt insertion during cobalamin biosynthesis. The
other two subunits are the P. denitrificans CobS
(TIGR01650) and CobN (pfam02514 CobN/Magnesium
Chelatase) proteins. To avoid potential confusion with
the nonhomologous Salmonella typhimurium/E.coli cobT
gene product, the P. denitrificans gene symbol is not
used in the name of this model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Heme,
porphyrin, and cobalamin].
Length = 600
Score = 49.2 bits (117), Expect = 7e-06
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E+EE+ ++++ E E+EE+ E E E QE +E E + E E EEE + +
Sbjct: 208 ESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLP 267
Query: 659 EE 660
+E
Sbjct: 268 DE 269
Score = 48.0 bits (114), Expect = 1e-05
Identities = 17/62 (27%), Positives = 30/62 (48%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E+EE+ ++++ E E+EE+ E E +E +E E + E E EEE +
Sbjct: 207 TESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDL 266
Query: 659 EE 660
+
Sbjct: 267 PD 268
Score = 47.2 bits (112), Expect = 2e-05
Identities = 18/60 (30%), Positives = 33/60 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E+EE+ E E E +E +E E + + E EEE + ++++ +E +++ E G G
Sbjct: 222 ENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSETPGEGA 281
Score = 47.2 bits (112), Expect = 2e-05
Identities = 17/57 (29%), Positives = 31/57 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E ++ E E+EE+ ++++ E E+EE+ + E E +E +E E + E E E
Sbjct: 202 EMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEM 258
Score = 44.9 bits (106), Expect = 1e-04
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+EE+ E E E +E +E E + E + EEE + ++++ +E +++ E
Sbjct: 221 TENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEEMVQSDQDDLPDESDDDSET 276
Score = 44.9 bits (106), Expect = 1e-04
Identities = 19/57 (33%), Positives = 32/57 (56%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EE ++ E E+EE+ ++++ E QEE+ E E E +E +E E + E G +E
Sbjct: 201 EEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257
Score = 44.5 bits (105), Expect = 2e-04
Identities = 17/53 (32%), Positives = 29/53 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E ++ E E+EE+ ++++ E E+EE E E E +E +E E + E E
Sbjct: 201 EEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESES 253
Score = 42.6 bits (100), Expect = 6e-04
Identities = 19/62 (30%), Positives = 35/62 (56%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E EE ++ E E+EE+ ++++ E ++EE+ E E E +E +E E + G+EE
Sbjct: 198 ELAEEMGDDTESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257
Query: 661 IS 662
+
Sbjct: 258 MV 259
Score = 41.1 bits (96), Expect = 0.002
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 16/111 (14%)
Query: 557 DNVPNTNK--LKTIRPSIKVWKTSDQDEIGSPRIEN---IIQLIRRGEREEEEEEEEEEE 611
D P++ K + R I+ D D + S I++ +++R R E EE ++
Sbjct: 148 DAPPHSAKALVDLWRNDIEAKAGKDLDRL-SAAIDDQQAFARVVREMLRSMELAEEMGDD 206
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE----------EEEEEEEEEE 652
E E+EE+ ++++ + E+EE+ E E E +E + E E EEE
Sbjct: 207 TESEDEEDGDDDQPTENEQEEQGEGEGEGQEGSAPQESEATDRESESGEEE 257
>gnl|CDD|240413 PTZ00423, PTZ00423, glideosome-associated protein 45; Provisional.
Length = 193
Score = 47.0 bits (111), Expect = 7e-06
Identities = 22/54 (40%), Positives = 38/54 (70%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
R+ +E E E+ ++E EE E++ E++ EE E++ EE E+EEE EE++ +EE+
Sbjct: 16 RDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEI 69
Score = 44.3 bits (104), Expect = 5e-05
Identities = 23/71 (32%), Positives = 44/71 (61%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+++ P+ +I +L R + ++E EE E++ E+ EE E++ EE E+EEE EE++ +
Sbjct: 7 KNKAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPK 66
Query: 640 EEEEEEEEEEE 650
EE + +E +
Sbjct: 67 EEIDYPIQENK 77
Score = 42.0 bits (98), Expect = 4e-04
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R+ + +E + + +E E E+ ++E EE Q+ E+ EE E++ EE E+EEE EE +
Sbjct: 6 RKNKAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQK 64
Score = 41.6 bits (97), Expect = 4e-04
Identities = 21/54 (38%), Positives = 35/54 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+R + +E E E+ ++E EE E++ E EE E++ EE E+EEE EE++ +E
Sbjct: 14 KRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKE 67
Score = 38.9 bits (90), Expect = 0.004
Identities = 22/59 (37%), Positives = 36/59 (61%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+E + + +E E E+ ++E EE+ E++ E+ EE E++ EE E+EEE KEEI
Sbjct: 11 KEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEI 69
Score = 37.0 bits (85), Expect = 0.013
Identities = 18/53 (33%), Positives = 33/53 (62%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E++ E+ EE E++ EE E+EEE EE + +EE + +E + +E+ ++ E
Sbjct: 36 EQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKSFDEKNLDDLE 88
Score = 36.2 bits (83), Expect = 0.023
Identities = 17/55 (30%), Positives = 35/55 (63%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E++ E+ EE E++ EE E+EEE +E++ +EE + +E + +E+ +++
Sbjct: 33 EIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEIDYPIQENKSFDEKNLDDL 87
Score = 35.9 bits (82), Expect = 0.037
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 569 RPSIKVWKTSDQDEIGS-PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ 627
+ K K D DE+ +++ ++ I + E+ EE E++ EE E+EEE EE++ +
Sbjct: 7 KNKAKEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPK 66
Query: 628 EEEEEEEEEEEEEEEEEEEEEE 649
EE + +E + +E+ ++ E
Sbjct: 67 EEIDYPIQENKSFDEKNLDDLE 88
Score = 29.3 bits (65), Expect = 5.1
Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE-EEEEEEEEEEEEVRGGGKEEISLHFYVL 668
+E + + +E E E++++E EE E++ E+ EE E++ EE + EE +
Sbjct: 11 KEPKRRDIDELAEREKLKKEVEEIPEQKPEDIVEELEDQPEEPPEQEEENEEQKPKEEID 70
Query: 669 YVLSKGK 675
Y + + K
Sbjct: 71 YPIQENK 77
>gnl|CDD|220371 pfam09736, Bud13, Pre-mRNA-splicing factor of RES complex. This
entry is characterized by proteins with alternating
conserved and low-complexity regions. Bud13 together
with Snu17p and a newly identified factor,
Pml1p/Ylr016c, form a novel trimeric complex. called The
RES complex, pre-mRNA retention and splicing complex.
Subunits of this complex are not essential for viability
of yeasts but they are required for efficient splicing
in vitro and in vivo. Furthermore, inactivation of this
complex causes pre-mRNA leakage from the nucleus. Bud13
contains a unique, phylogenetically conserved C-terminal
region of unknown function.
Length = 141
Score = 45.8 bits (109), Expect = 7e-06
Identities = 22/52 (42%), Positives = 35/52 (67%), Gaps = 3/52 (5%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEE---EEVQEEEEEEEEEEEEEEEEE 644
R + EE+ EE+E E+EE+E +EE+E+E VQ+EE E+ EE E+ + +
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNK 61
Score = 36.1 bits (84), Expect = 0.014
Identities = 18/62 (29%), Positives = 35/62 (56%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E+E E+EE+E +EE+E+E + + +E E+ EE E+ + + ++E+ KE
Sbjct: 19 EEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYDEELKE 78
Query: 660 EI 661
+
Sbjct: 79 QE 80
Score = 35.7 bits (83), Expect = 0.020
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEE--EEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
RI +I + ERE+EE+E +EE+E+E + ++EE E+ EE E+ + + ++
Sbjct: 10 RIIDIEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADD 69
Query: 645 EEEEEE 650
E+ +EE
Sbjct: 70 EDYDEE 75
Score = 35.4 bits (82), Expect = 0.029
Identities = 18/45 (40%), Positives = 31/45 (68%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE+ EE+E E+EE+E +E +E+E + ++EE E+ EE E+ +
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAK 59
Score = 34.6 bits (80), Expect = 0.046
Identities = 19/67 (28%), Positives = 37/67 (55%), Gaps = 4/67 (5%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEE----EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
IE + R + E+E +EE+E+E ++EE E+ EE + + + ++E+ +
Sbjct: 14 IEEKREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYD 73
Query: 644 EEEEEEE 650
EE +E+E
Sbjct: 74 EELKEQE 80
Score = 33.0 bits (76), Expect = 0.19
Identities = 14/27 (51%), Positives = 21/27 (77%)
Query: 631 EEEEEEEEEEEEEEEEEEEEEEVRGGG 657
EE+ EE+E E+EE+E +EE+E+ G G
Sbjct: 15 EEKREEKEREKEEKERKEEKEKEWGKG 41
Score = 31.1 bits (71), Expect = 0.71
Identities = 13/26 (50%), Positives = 21/26 (80%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ EE+ EE+E E+EE+E +EE+E+E
Sbjct: 12 IDIEEKREEKEREKEEKERKEEKEKE 37
Score = 30.0 bits (68), Expect = 1.8
Identities = 17/63 (26%), Positives = 36/63 (57%), Gaps = 4/63 (6%)
Query: 593 QLIRRGEREEEEEEEEE----EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ + E+E +EE+E+E ++EE E+ EE E+ + + ++E+ +EE +E+E
Sbjct: 21 KEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYDEELKEQE 80
Query: 649 EEE 651
+
Sbjct: 81 RWD 83
Score = 28.4 bits (64), Expect = 5.7
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 587 RIENIIQLIRRGEREEEEEEE-------EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ E + ER+EE+E+E +EE E+ EE E+ + + + ++E+ +EE
Sbjct: 17 KREEKEREKEEKERKEEKEKEWGKGLVQKEEREKRLEELEKAKNKPLARYADDEDYDEEL 76
Query: 640 EEEEEEE 646
+E+E +
Sbjct: 77 KEQERWD 83
>gnl|CDD|227693 COG5406, COG5406, Nucleosome binding factor SPN, SPT16 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 1001
Score = 48.9 bits (116), Expect = 9e-06
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 7/62 (11%)
Query: 598 GEREEEEEEEEEEEEEE-------EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
G +E +E EEE E E +E +E+EE +E E+ E+E E + +EE+ E+ +E
Sbjct: 926 GSDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDE 985
Query: 651 EE 652
E
Sbjct: 986 LE 987
Score = 47.7 bits (113), Expect = 2e-05
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E EEE E E ++E +E +E+EE + E+ E+E E + +EE+ E+ +E
Sbjct: 933 ESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAY 992
Query: 659 EE 660
+
Sbjct: 993 DS 994
Score = 43.8 bits (103), Expect = 3e-04
Identities = 14/51 (27%), Positives = 30/51 (58%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++E +E +E+EE +E E+ E+E + + +EE+ E+ +E E + +
Sbjct: 945 SDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
Score = 43.5 bits (102), Expect = 4e-04
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E ++E +E +E+EE +E E+ E+ E + +EE+ E+ +E E + +
Sbjct: 942 EASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSR 995
Score = 43.1 bits (101), Expect = 5e-04
Identities = 17/68 (25%), Positives = 33/68 (48%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
D+ E + + + E +E +E+EE +E E+ E+E E +EE+ E+ +E E
Sbjct: 928 DDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELE 987
Query: 641 EEEEEEEE 648
+ +
Sbjct: 988 SKAAYDSR 995
Score = 42.7 bits (100), Expect = 7e-04
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+E +E +E+EE +E E+ E+E E +EE+ E+ +E E + + + R
Sbjct: 945 SDDESDETDEDEESDESSEDLSEDESENDSSDEEDGEDWDELESKAAYDSRPGKRR 1000
Score = 38.5 bits (89), Expect = 0.014
Identities = 18/52 (34%), Positives = 29/52 (55%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++E +E EEE E E ++E +E +E+EE +E E+ E+E EE
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDEESDESSEDLSEDESENDSSDEE 978
Score = 30.0 bits (67), Expect = 5.6
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
++E +E EEEV E E ++E +E +E+E E +E E+ S
Sbjct: 927 SDDESDESEEEVSEYEASSDDESDETDEDE----ESDESSEDLSEDES 970
>gnl|CDD|239286 cd02988, Phd_like_VIAF, Phosducin (Phd)-like family, Viral
inhibitor of apoptosis (IAP)-associated factor (VIAF)
subfamily; VIAF is a Phd-like protein that functions in
caspase activation during apoptosis. It was identified
as an IAP binding protein through a screen of a human
B-cell library using a prototype IAP. VIAF lacks a
consensus IAP binding motif and while it does not
function as an IAP antagonist, it still plays a
regulatory role in the complete activation of caspases.
VIAF itself is a substrate for IAP-mediated
ubiquitination, suggesting that it may be a target of
IAPs in the prevention of cell death. The similarity of
VIAF to Phd points to a potential role distinct from
apoptosis regulation. Phd functions as a cytosolic
regulator of G protein by specifically binding to G
protein betagamma (Gbg)-subunits. The C-terminal domain
of Phd adopts a thioredoxin fold, but it does not
contain a CXXC motif. Phd interacts with G protein beta
mostly through the N-terminal helical domain.
Length = 192
Score = 46.5 bits (111), Expect = 9e-06
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
L ++G + +EEEEE E +E E E++ +E +EE +EEE++ EE
Sbjct: 6 ILRKKGILPPKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE 63
Score = 45.3 bits (108), Expect = 2e-05
Identities = 14/47 (29%), Positives = 25/47 (53%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ +EEEEE E + E E++ +E +EE +EEE++ +
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFL 61
Score = 45.3 bits (108), Expect = 3e-05
Identities = 15/46 (32%), Positives = 25/46 (54%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ +EEEEE E +E E E++ +E +EE +EEE++
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRF 60
Score = 39.9 bits (94), Expect = 0.002
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ +EEEEE E +E E E++ +E +EE +EEE+ R
Sbjct: 15 PKPPSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDR 59
Score = 31.1 bits (71), Expect = 1.3
Identities = 14/45 (31%), Positives = 23/45 (51%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
SP+ E L + E E++ +E +EE +EEE++ EE
Sbjct: 19 SPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE 63
Score = 31.1 bits (71), Expect = 1.4
Identities = 17/84 (20%), Positives = 33/84 (39%), Gaps = 6/84 (7%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE------VQEEEEEEEE 635
E + I+ E++ +E +EE +EEE++ E + E + E+
Sbjct: 19 SPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEEYRRKRLAEMKALAEK 78
Query: 636 EEEEEEEEEEEEEEEEEVRGGGKE 659
+ E E + + EV K+
Sbjct: 79 SKFGEVYEISKPDYVREVTEASKD 102
Score = 29.5 bits (67), Expect = 4.6
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
P + + +E E E++ +E +EE +EEE+ + EE
Sbjct: 18 PSPKEEEEEALELAIQEAHENALEKKLLDELDEELDEEEDDRFLEE 63
>gnl|CDD|220102 pfam09073, BUD22, BUD22. BUD22 has been shown in yeast to be a
nuclear protein involved in bud-site selection. It plays
a role in positioning the proximal bud pole signal. More
recently it has been shown to be involved in ribosome
biogenesis.
Length = 424
Score = 48.3 bits (115), Expect = 1e-05
Identities = 16/60 (26%), Positives = 42/60 (70%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++G+ +++ ++ +++E +E ++++EEE E ++E + EE E++ ++EEEE+ + E+
Sbjct: 146 AKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYS 205
Score = 46.4 bits (110), Expect = 4e-05
Identities = 14/56 (25%), Positives = 39/56 (69%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ ++ + +++ ++ +++E +E ++++EE E E+E + EE E++ ++EEEE+ +
Sbjct: 145 KAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSD 200
Score = 45.2 bits (107), Expect = 8e-05
Identities = 16/64 (25%), Positives = 38/64 (59%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
+ ++ +++E +E ++++EEE E E+E EE E++ ++EEEE+ + E+ + +
Sbjct: 153 KKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLV 212
Query: 657 GKEE 660
+
Sbjct: 213 DSSD 216
Score = 44.4 bits (105), Expect = 1e-04
Identities = 22/93 (23%), Positives = 39/93 (41%), Gaps = 2/93 (2%)
Query: 573 KVWKTSDQDEIGSP--RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
K K+ ++ S E + + EE E++ ++EEEE+ + E+ + + +
Sbjct: 154 KTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLVD 213
Query: 631 EEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
+EEE EE E+ E EIS
Sbjct: 214 SSDEEEGEEAPSINYNEDTSESESDESDSEISE 246
Score = 44.4 bits (105), Expect = 2e-04
Identities = 16/65 (24%), Positives = 42/65 (64%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++ ++ +++E +E ++++EEE E E+E + +E E++ ++EEEE+ + E+ + + +
Sbjct: 153 KKTKKSKKKEAKESSDKDDEEESESEDESKSEESAEDDSDDEEEEDSDSEDYSQYDGMLV 212
Query: 656 GGKEE 660
+E
Sbjct: 213 DSSDE 217
Score = 40.6 bits (95), Expect = 0.002
Identities = 18/77 (23%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
Query: 588 IENIIQLIR--RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+E+I++ + G + ++ + +++ ++ +++E +E + +EEE E E+E + EE E
Sbjct: 129 LESIMEGLDKILGIETKAKKGKAKKKTKKSKKKEAKESSDKDDEEESESEDESKSEESAE 188
Query: 646 EEEEEEEVRGGGKEEIS 662
++ ++EE E+ S
Sbjct: 189 DDSDDEEEEDSDSEDYS 205
Score = 32.5 bits (74), Expect = 0.75
Identities = 16/90 (17%), Positives = 29/90 (32%), Gaps = 26/90 (28%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE----------------- 640
E E EE E+ E E +E + E+ E + EE
Sbjct: 216 DEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPPSKKPKEKKTSSTFLPS 275
Query: 641 ---------EEEEEEEEEEEEVRGGGKEEI 661
E+E++++E+ + + K
Sbjct: 276 LMGGYFSGSEDEDDDDEDIDPDQVVKKPVK 305
Score = 29.0 bits (65), Expect = 8.1
Identities = 15/91 (16%), Positives = 29/91 (31%), Gaps = 37/91 (40%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE----------------------------- 631
+EEE EE E+ E E +E E E
Sbjct: 216 DEEEGEEAPSINYNEDTSESESDESDSEISESRSVSDSEESSPPSKKPKEKKTSSTFLPS 275
Query: 632 --------EEEEEEEEEEEEEEEEEEEEEVR 654
E+E++++E+ + ++ ++ R
Sbjct: 276 LMGGYFSGSEDEDDDDEDIDPDQVVKKPVKR 306
>gnl|CDD|235850 PRK06669, fliH, flagellar assembly protein H; Validated.
Length = 281
Score = 47.3 bits (113), Expect = 1e-05
Identities = 40/125 (32%), Positives = 54/125 (43%), Gaps = 22/125 (17%)
Query: 558 NVPNTNKLKTI---RPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEE 614
NV N KLKT + KV +++ + E + QL E +E EE EE+
Sbjct: 10 NVINKEKLKTHEIQKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAF 69
Query: 615 EEEEEEEEE----------------EEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG-- 656
E E EEE E++Q + E E+EE EEE E EE + E G
Sbjct: 70 EIVEAAEEEAKEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYE 129
Query: 657 -GKEE 660
G+EE
Sbjct: 130 KGREE 134
Score = 43.5 bits (103), Expect = 2e-04
Identities = 25/67 (37%), Positives = 36/67 (53%), Gaps = 2/67 (2%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+E+E EEEEE+ E+ EE +E +E EE EE+ E E EEE +EE ++
Sbjct: 30 LSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDAFEIVEAAEEEAKEELLK--KT 87
Query: 659 EEISLHF 665
+E S
Sbjct: 88 DEASSII 94
Score = 38.8 bits (91), Expect = 0.006
Identities = 20/64 (31%), Positives = 33/64 (51%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
N+I + E ++ + +E+E EEEEE+V++ EE +E +E EE EE+
Sbjct: 9 SNVINKEKLKTHEIQKYRFKVLSIKEKERLREEEEEQVEQLREEANDEAKEIIEEAEEDA 68
Query: 649 EEEE 652
E
Sbjct: 69 FEIV 72
Score = 33.8 bits (78), Expect = 0.20
Identities = 19/48 (39%), Positives = 26/48 (54%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ + E E+EE EEE E EE + E +E E+ EE EE E E+
Sbjct: 98 QMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEGLEEVRELIEQ 145
Score = 32.7 bits (75), Expect = 0.49
Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEE-EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E +++ E+ + + E E+EE EEE E EE + E EE E+ EE EE
Sbjct: 80 KEELLKKTDEASSIIEKLQMQIEREQEEWEEELERLIEEAKAEGYEEGYEKGREEGLEEV 139
Query: 647 EEEEEE 652
E E+
Sbjct: 140 RELIEQ 145
>gnl|CDD|218177 pfam04615, Utp14, Utp14 protein. This protein is found to be part
of a large ribonucleoprotein complex containing the U3
snoRNA. Depletion of the Utp proteins impedes production
of the 18S rRNA, indicating that they are part of the
active pre-rRNA processing complex. This large RNP
complex has been termed the small subunit (SSU)
processome.
Length = 728
Score = 48.5 bits (116), Expect = 1e-05
Identities = 26/94 (27%), Positives = 42/94 (44%), Gaps = 11/94 (11%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEE-----------EEEEEEEEEEEEEEV 626
+ D+ EN L ++ + +E E++EE E ++EE + E EE+
Sbjct: 338 DEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEEL 397
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ E E EEE +EEE EE ++ G E
Sbjct: 398 RRELEGEEESDEEENEEPSKKNVGRRKFGPENGE 431
Score = 45.8 bits (109), Expect = 7e-05
Identities = 26/101 (25%), Positives = 42/101 (41%), Gaps = 31/101 (30%)
Query: 593 QLIRR--GEREEEEEEEEEEEEEEEEEEEEE------------------EEEEVQEEEE- 631
+L R+ G+ EE+E+E+ + EEE+E+++E +E E EE
Sbjct: 313 ELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKLKEGEDDEENSG 372
Query: 632 ----------EEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E ++EE + E EE E E +EE
Sbjct: 373 LLSMKFMQRAEARKKEENDAEIEELRRELEGEEESDEEENE 413
Score = 44.7 bits (106), Expect = 1e-04
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE-----EEEEEEEEEEEEEEEEV 653
R++EE + E EE E E EEE +EE EE ++ E E+E E ++ ++E
Sbjct: 384 ARKKEENDAEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKEN 443
Query: 654 RGGGKEEIS 662
+ KE+
Sbjct: 444 KNEFKEKKE 452
Score = 43.1 bits (102), Expect = 5e-04
Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 13/74 (17%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEE-------------EEEEEEEVQEEEEEEEEEEEE 639
I RE E EEE +EEE EE + E+E E + ++E + E +E++
Sbjct: 392 AEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKK 451
Query: 640 EEEEEEEEEEEEEV 653
E +EEEE E+EEE
Sbjct: 452 ESDEEEELEDEEEA 465
Score = 42.7 bits (101), Expect = 5e-04
Identities = 26/81 (32%), Positives = 44/81 (54%), Gaps = 7/81 (8%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEE-------EEEEEEEEVQEEEEEEEEEEEEEE 641
I +L R E EEE +EEE EE ++ E E+E E ++ ++E + E +E++
Sbjct: 392 AEIEELRRELEGEEESDEEENEEPSKKNVGRRKFGPENGEKEAESKKLKKENKNEFKEKK 451
Query: 642 EEEEEEEEEEEVRGGGKEEIS 662
E +EEEE E+E ++ +
Sbjct: 452 ESDEEEELEDEEEAKVEKVAN 472
Score = 42.4 bits (100), Expect = 0.001
Identities = 22/52 (42%), Positives = 37/52 (71%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + E +E++E +EEEE E+EEE +V++ + + E+ ++EEEEEE +EE
Sbjct: 442 ENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEE 493
Score = 42.0 bits (99), Expect = 0.001
Identities = 22/52 (42%), Positives = 36/52 (69%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ E +E++E +EEEE E+EEE + E+V + + E+ ++EEEEEE +EE
Sbjct: 443 NKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEEN 494
Score = 40.4 bits (95), Expect = 0.003
Identities = 22/53 (41%), Positives = 35/53 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E + E +E++E +EEEE E+EEE + E + + E+ ++EEEEEE +EE
Sbjct: 442 ENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEEN 494
Score = 40.0 bits (94), Expect = 0.004
Identities = 20/54 (37%), Positives = 35/54 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + E +E++E +EEEE E+EEE + + + + E+ ++EEEEEE +EE
Sbjct: 441 KENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEEN 494
Score = 39.7 bits (93), Expect = 0.005
Identities = 21/59 (35%), Positives = 34/59 (57%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E +E++E +EEEE E+EEE + E+ + + E+ ++EEEEEE +EE
Sbjct: 446 EFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVG 504
Score = 39.3 bits (92), Expect = 0.006
Identities = 20/55 (36%), Positives = 37/55 (67%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ ++E + E +E++E +EEEE E+EEE + E+ + + E+ ++EEEEEE +
Sbjct: 438 KLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDE 492
Score = 38.9 bits (91), Expect = 0.010
Identities = 21/103 (20%), Positives = 44/103 (42%), Gaps = 31/103 (30%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE---------- 638
+ + + +R+GE + E + EE+E+E+ + EEE+ ++E++++ E
Sbjct: 302 KALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLRKKLGKL 361
Query: 639 ---------------------EEEEEEEEEEEEEEVRGGGKEE 660
E ++EE + E EE+R + E
Sbjct: 362 KEGEDDEENSGLLSMKFMQRAEARKKEENDAEIEELRRELEGE 404
Score = 38.5 bits (90), Expect = 0.013
Identities = 18/58 (31%), Positives = 37/58 (63%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ E ++ ++E + E +E++E +EEEE E+ +E + E+ + + E+ ++EEEEE
Sbjct: 432 KEAESKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEE 489
Score = 37.7 bits (88), Expect = 0.024
Identities = 19/59 (32%), Positives = 36/59 (61%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
++ ++E + E +E++E +EEEE E+EE + E+ + + E+ ++EEEEEE
Sbjct: 436 SKKLKKENKNEFKEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEEN 494
Score = 35.0 bits (81), Expect = 0.14
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE----EEEEEEEEEEEEEEEEEEEEEEVR 654
+ ++E +EEEE E+EEE + E+ + ++ E EEEEEE +EE + +
Sbjct: 448 KEKKESDEEEELEDEEEAKVEKVANKLLKRSEKAQKEEEEEELDEENPWLKTTSSVGKSA 507
Query: 655 GGGKEE 660
+
Sbjct: 508 KKQDSK 513
Score = 33.9 bits (78), Expect = 0.35
Identities = 15/47 (31%), Positives = 31/47 (65%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE + EE+ + EE +++ + EE+E+E+ + EEE+E+++E+
Sbjct: 298 EEARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDED 344
Score = 33.5 bits (77), Expect = 0.41
Identities = 17/58 (29%), Positives = 36/58 (62%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+++ G + +EE + EE+ + EE + E + EE+E+E+ + EEE+E+++E+
Sbjct: 287 SMLKTGRAKYDEEARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDED 344
Score = 32.7 bits (75), Expect = 0.74
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EE + EE+ + EE E + EE+E+E+ + EEE+E+++E G+ L
Sbjct: 298 EEARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWML 354
Score = 32.7 bits (75), Expect = 0.76
Identities = 19/63 (30%), Positives = 40/63 (63%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
++++ R EE + EE+ + EE + E + V EE+E+E+ + EEE+E+++E+++
Sbjct: 287 SMLKTGRAKYDEEARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDD 346
Query: 650 EEE 652
+ E
Sbjct: 347 DGE 349
Score = 32.0 bits (73), Expect = 1.1
Identities = 16/57 (28%), Positives = 34/57 (59%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R+ EE+ + EE + E + EE ++E+ + EEE+E+++E++++ E +R
Sbjct: 299 EARKALEEQLRQGEELRRKIEGKSVSEEDEDEDSDSEEEDEDDDEDDDDGENPWMLR 355
Score = 30.8 bits (70), Expect = 3.3
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
R ++E+ +EE +E EE + + E EE+++ E EE
Sbjct: 232 HRVHKKEKLKEELKEFEELVKADPEAALEELEKLERRRAEE 272
Score = 30.0 bits (68), Expect = 5.5
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E+ +EE +E EE+ + + E EE E+ E EE
Sbjct: 238 EKLKEELKEFEELVKADPEAALEELEKLERRRAEE 272
Score = 29.3 bits (66), Expect = 8.5
Identities = 14/51 (27%), Positives = 33/51 (64%), Gaps = 4/51 (7%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQE----EEEEEEEEEEEEEEEEEEEEEEEEV 653
+EE+E++EE ++++ ++E ++ E E+E++E EEE+ +E ++
Sbjct: 563 DEEDEDDEELPFLFKQKDLIKEAFAGDDVVAEFEKEKKEVIEEEDPKEIDL 613
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated.
Length = 619
Score = 48.3 bits (116), Expect = 1e-05
Identities = 23/73 (31%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 588 IENIIQLIRR---GE---REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
I+ I++ R GE RE + + EE+ E EE +E+EEEEE+E ++
Sbjct: 149 IDAILEWYDRLENGERRLRELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDS 208
Query: 642 EEEEEEEEEEEVR 654
+E E E+V
Sbjct: 209 LAADESELPEKVL 221
Score = 44.0 bits (105), Expect = 2e-04
Identities = 16/55 (29%), Positives = 28/55 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
R+ +I EE+ E EE +++E+EEEEE+ ++ +E E E+
Sbjct: 165 RLRELIDGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEK 219
Score = 39.8 bits (94), Expect = 0.005
Identities = 16/70 (22%), Positives = 29/70 (41%), Gaps = 12/70 (17%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEE----EEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+D + S +IE+II ++ + EE + ++ E E + +E+ EEE
Sbjct: 37 EDIVDSEQIEDIIAML--------NDMGIQVVEEAPDADDLLLAENEADAQTDEDAEEEA 88
Query: 636 EEEEEEEEEE 645
E E
Sbjct: 89 AAALSSVESE 98
Score = 36.7 bits (86), Expect = 0.046
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
V EE+ E EE +++E+EEE + ++
Sbjct: 173 FVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLA 210
Score = 34.0 bits (79), Expect = 0.25
Identities = 15/78 (19%), Positives = 37/78 (47%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
D ++ + + +E+EEEEE+E ++ +E E E+V E+ + ++
Sbjct: 171 DGFVDPNAEEDPAHVGSELEELDDDEDEEEEEDENDDSLAADESELPEKVLEKFKALAKQ 230
Query: 637 EEEEEEEEEEEEEEEEVR 654
++ + +E++ E +
Sbjct: 231 YKKLRKAQEKKVEGRLAQ 248
Score = 32.1 bits (74), Expect = 1.1
Identities = 10/38 (26%), Positives = 18/38 (47%), Gaps = 3/38 (7%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEE---EEEEEE 652
EE + +++ E E + + +E+ EEE E E
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESE 98
Score = 32.1 bits (74), Expect = 1.1
Identities = 10/40 (25%), Positives = 17/40 (42%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
EE ++ E E + + +E+ EEE + EI
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESEIG 100
>gnl|CDD|117592 pfam09026, Cenp-B_dimeris, Centromere protein B dimerisation
domain. The centromere protein B (CENP-B) dimerisation
domain is composed of two alpha-helices, which are
folded into an antiparallel configuration. Dimerisation
of CENP-B is mediated by this domain, in which monomers
dimerise to form a symmetrical, antiparallel, four-helix
bundle structure with a large hydrophobic patch in which
23 residues of one monomer form van der Waals contacts
with the other monomer. This CENP-B dimer configuration
may be suitable for capturing two distant CENP-B boxes
during centromeric heterochromatin formation.
Length = 101
Score = 44.4 bits (104), Expect = 1e-05
Identities = 13/35 (37%), Positives = 30/35 (85%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E EE+ + +EEE++++E+EE+++E+++E+++EV
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEV 41
Score = 42.4 bits (99), Expect = 5e-05
Identities = 14/42 (33%), Positives = 32/42 (76%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E EE+ + + EEE++++E+EE+++E+++E+++E V G+
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDEVPVPSFGE 48
Score = 42.1 bits (98), Expect = 8e-05
Identities = 12/34 (35%), Positives = 28/34 (82%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E EE+ + + +EEE++++E+EE +E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 41.7 bits (97), Expect = 9e-05
Identities = 11/34 (32%), Positives = 28/34 (82%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
E EE+ + + +EEE++++E+E ++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 40.9 bits (95), Expect = 2e-04
Identities = 12/34 (35%), Positives = 28/34 (82%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E EE+ + + +EEE+ +E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 40.9 bits (95), Expect = 2e-04
Identities = 12/34 (35%), Positives = 28/34 (82%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
E EE+ + + +EEE++++E+EE+++E+ E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 40.9 bits (95), Expect = 2e-04
Identities = 11/34 (32%), Positives = 29/34 (85%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
E EE+ + + +EEE++++E+EE++ ++++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 40.9 bits (95), Expect = 2e-04
Identities = 11/34 (32%), Positives = 29/34 (85%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E EE+ + + +EEE++++E +E+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 40.5 bits (94), Expect = 2e-04
Identities = 12/34 (35%), Positives = 28/34 (82%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
E EE+ + + +EEE++++E+EE+ E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 40.5 bits (94), Expect = 2e-04
Identities = 12/34 (35%), Positives = 28/34 (82%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E EE+ + + +EEE ++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 40.1 bits (93), Expect = 3e-04
Identities = 11/34 (32%), Positives = 28/34 (82%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E EE+ + + +EEE++++ EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 40.1 bits (93), Expect = 3e-04
Identities = 12/34 (35%), Positives = 28/34 (82%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E EE+ + + +EEE++ E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 40.1 bits (93), Expect = 4e-04
Identities = 11/34 (32%), Positives = 29/34 (85%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E EE+ + + +EEE+++ ++EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 40.1 bits (93), Expect = 4e-04
Identities = 11/34 (32%), Positives = 29/34 (85%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E EE+ + + +EE++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 40.1 bits (93), Expect = 4e-04
Identities = 10/34 (29%), Positives = 29/34 (85%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E EE+ + + +EEE++++E+ ++++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 39.8 bits (92), Expect = 4e-04
Identities = 11/34 (32%), Positives = 28/34 (82%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
E EE+ + + +EEE++++E+EE+++ ++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 39.8 bits (92), Expect = 4e-04
Identities = 11/34 (32%), Positives = 28/34 (82%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E EE+ + + +EE +++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 39.8 bits (92), Expect = 5e-04
Identities = 10/34 (29%), Positives = 29/34 (85%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E EE+ + + +E +++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 39.8 bits (92), Expect = 5e-04
Identities = 10/34 (29%), Positives = 29/34 (85%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E EE+ + + + +E++++E+EE+++E+++E+++E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 39.0 bits (90), Expect = 8e-04
Identities = 10/38 (26%), Positives = 27/38 (71%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
+ + E + + +EEE++++E+EE+++E+++E +E
Sbjct: 3 LHFLEGEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 39.0 bits (90), Expect = 0.001
Identities = 10/33 (30%), Positives = 27/33 (81%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
GE + + + +EEE++++E+EE+++E+++ ++E
Sbjct: 8 GEEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 38.6 bits (89), Expect = 0.001
Identities = 10/25 (40%), Positives = 25/25 (100%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEV 626
+EEE++++E+EE+++E+++E+++EV
Sbjct: 17 DEEEDDDDEDEEDDDEDDDEDDDEV 41
Score = 35.9 bits (82), Expect = 0.011
Identities = 10/26 (38%), Positives = 24/26 (92%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEV 626
EEE++++E+EE+++E+++E+++E V
Sbjct: 18 EEEDDDDEDEEDDDEDDDEDDDEVPV 43
Score = 34.7 bits (79), Expect = 0.028
Identities = 10/32 (31%), Positives = 23/32 (71%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EE+ + + +EEE++++E+EE+++E+ E
Sbjct: 9 EEDSDSDSDEEEDDDDEDEEDDDEDDDEDDDE 40
Score = 33.2 bits (75), Expect = 0.089
Identities = 9/27 (33%), Positives = 23/27 (85%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ EE+ + + +EEE++++E+EE+++E
Sbjct: 6 LEGEEDSDSDSDEEEDDDDEDEEDDDE 32
Score = 30.1 bits (67), Expect = 1.2
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 631 EEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E EE+ + + +EEE++++E+EE +E
Sbjct: 7 EGEEDSDSDSDEEEDDDDEDEEDDDEDDDE 36
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.
Length = 509
Score = 48.1 bits (115), Expect = 1e-05
Identities = 8/55 (14%), Positives = 44/55 (80%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ ++++++++ ++++ ++++++E+++E ++++ ++E+EE++E +E E+ +++
Sbjct: 132 DDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDD 186
Score = 48.1 bits (115), Expect = 1e-05
Identities = 13/100 (13%), Positives = 57/100 (57%)
Query: 561 NTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEE 620
+ S K K + D+ I ++ + + +++++++++ ++++ +++++
Sbjct: 93 KKKLKDELDSSKKAEKKNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDD 152
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+E+++ +++++ ++E+EE++E +E E+ ++ E+
Sbjct: 153 DEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDED 192
Score = 47.7 bits (114), Expect = 2e-05
Identities = 9/53 (16%), Positives = 41/53 (77%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++ ++++++E+++E++++++ ++E +E++E +E E+ ++++ +E++ E
Sbjct: 143 DDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSE 195
Score = 47.3 bits (113), Expect = 2e-05
Identities = 10/50 (20%), Positives = 38/50 (76%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++++++E+++E++++++ ++E+EE +E +E E+ ++++ +E++ E
Sbjct: 147 IDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEA 196
Score = 46.9 bits (112), Expect = 2e-05
Identities = 8/52 (15%), Positives = 41/52 (78%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++++ ++++++E+++E++++++ + ++EE++E +E E+ ++++ +E++
Sbjct: 143 DDDDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDS 194
Score = 46.9 bits (112), Expect = 3e-05
Identities = 9/54 (16%), Positives = 42/54 (77%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ ++++++E+++E++++++ ++E+ +++E +E E+ ++++ +E++ E +R
Sbjct: 145 DDIDDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALR 198
Score = 45.8 bits (109), Expect = 7e-05
Identities = 10/54 (18%), Positives = 40/54 (74%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++++++E+++E++++++ ++E+EE+ + +E E+ ++++ +E++ E + R
Sbjct: 148 DDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEALRQAR 201
Score = 42.7 bits (101), Expect = 6e-04
Identities = 15/88 (17%), Positives = 47/88 (53%)
Query: 557 DNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEE 616
N + + I V +D D+ + I + +E+++E++++++ ++E
Sbjct: 109 KNALDKDDDLNYVKDIDVLNQADDDDDDDDDDDLDDDDIDDDDDDEDDDEDDDDDDVDDE 168
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+EE++E +E+++ ++++ +E++ E
Sbjct: 169 DEEKKEAKELEKLSDDDDFVWDEDDSEA 196
Score = 42.3 bits (100), Expect = 7e-04
Identities = 10/49 (20%), Positives = 38/49 (77%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ ++++E+++E++++++ ++E+EE++E +E E+ ++++ +E++ E
Sbjct: 148 DDDDDDEDDDEDDDDDDVDDEDEEKKEAKELEKLSDDDDFVWDEDDSEA 196
>gnl|CDD|219655 pfam07946, DUF1682, Protein of unknown function (DUF1682). The
members of this family are all hypothetical eukaryotic
proteins of unknown function. One member is described as
being an adipocyte-specific protein, but no evidence of
this was found.
Length = 322
Score = 47.6 bits (114), Expect = 1e-05
Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 17/110 (15%)
Query: 562 TNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIR---------------RGEREEEEEE 606
T K + S + K+ + E P + ++ L+ REEEEE+
Sbjct: 212 TKPKKRLIISFNLPKSKEDLEDLLPLLNLVLYLVDKLANLKLSPEVLRKVDKTREEEEEK 271
Query: 607 --EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ EEE +EE +E++EE++ +E E + + EE+ + EE+E +++ R
Sbjct: 272 ILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQRKLEEKERKKQAR 321
Score = 37.2 bits (87), Expect = 0.022
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EEEEE+ ++ EEE +EE +E++EE+++EE E ++ EE
Sbjct: 266 EEEEEKILKAAEEERQEEAQEKKEEKKKEEREAKLAKLSPEEQ 308
>gnl|CDD|219256 pfam06991, Prp19_bind, Splicing factor, Prp19-binding domain. This
family represents the C-terminus (approximately 300
residues) of proteins that are involved as binding
partners for Prp19 as part of the nuclear pore complex.
The family in Drosophila is necessary for pre-mRNA
splicing, and the human protein has been found in
purifications of the spliceosome. In the past this
family was thought, erroneously, to be associated with
microfibrillin.
Length = 277
Score = 47.2 bits (112), Expect = 1e-05
Identities = 25/74 (33%), Positives = 41/74 (55%), Gaps = 9/74 (12%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEE---------VQEEEEEEEEEEEEEEEEEEEEEE 649
E EEE+E EEEEEE EEEEE + E++ ++++ +E E E +E+ EE
Sbjct: 6 ELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEE 65
Query: 650 EEEVRGGGKEEISL 663
E + + ++ +L
Sbjct: 66 EAKRKAEERKRETL 79
Score = 46.8 bits (111), Expect = 1e-05
Identities = 28/74 (37%), Positives = 36/74 (48%), Gaps = 18/74 (24%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE------------------EEEEEEEEEE 640
E E E EEE+E EEEEEE EEEEE E++ +E E E +E
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKE 60
Query: 641 EEEEEEEEEEEEVR 654
+ EEE + + E R
Sbjct: 61 KALEEEAKRKAEER 74
Score = 46.8 bits (111), Expect = 1e-05
Identities = 29/84 (34%), Positives = 42/84 (50%), Gaps = 20/84 (23%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEE-----------EEEEVQEEEEEEEEEEEE 639
+++L E EEEEEE EEEEE + E++ E + +QE E E +E+
Sbjct: 4 VLELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKAL 63
Query: 640 EEEEEEEEEE---------EEEVR 654
EEE + + EE EEEV+
Sbjct: 64 EEEAKRKAEERKRETLKIVEEEVK 87
Score = 40.7 bits (95), Expect = 0.001
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 21/95 (22%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE-------------EE 624
+D ++ PR++ + R+ +R +E E E +E+ EEE + EE
Sbjct: 27 TDSEDDMEPRLKPV--FTRKKDRITIQEREREAAKEKALEEEAKRKAEERKRETLKIVEE 84
Query: 625 EVQEEEEEEEEEEEEE------EEEEEEEEEEEEV 653
EV++E E ++ E + ++E EEEE E
Sbjct: 85 EVKKELELKKRNTLLEANIDDVDTDDENEEEEYEA 119
Score = 37.2 bits (86), Expect = 0.019
Identities = 23/90 (25%), Positives = 33/90 (36%), Gaps = 33/90 (36%)
Query: 597 RGEREEEEEEEEEEE------------------------EEEEEEEEEEEEEEVQEEEEE 632
EEEEE EEEEE +E E E +E+ E + + +
Sbjct: 12 ESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRITIQEREREAAKEKALEEEAKRKA 71
Query: 633 EE---------EEEEEEEEEEEEEEEEEEV 653
EE EEE ++E E ++ E
Sbjct: 72 EERKRETLKIVEEEVKKELELKKRNTLLEA 101
Score = 34.9 bits (80), Expect = 0.11
Identities = 23/73 (31%), Positives = 35/73 (47%), Gaps = 13/73 (17%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE-------------EEEEEEEEEEE 647
EEE ++E E ++ E ++ + +E EEEE E EE EE E E+
Sbjct: 83 EEEVKKELELKKRNTLLEANIDDVDTDDENEEEEYEAWKLRELKRIKRDREEREEMEREK 142
Query: 648 EEEEEVRGGGKEE 660
E E++R +EE
Sbjct: 143 AEIEKMRNMTEEE 155
Score = 31.8 bits (72), Expect = 0.93
Identities = 18/49 (36%), Positives = 26/49 (53%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYVLYVLSKGKIA 677
E E E EEE+E EEEEEE EEE ++++ ++ K +I
Sbjct: 1 ETEVLELEEEDESGEEEEEESEEEEETDSEDDMEPRLKPVFTRKKDRIT 49
Score = 31.4 bits (71), Expect = 1.2
Identities = 23/86 (26%), Positives = 38/86 (44%), Gaps = 20/86 (23%)
Query: 593 QLIRRGEREEEEEEEEEEEEE------EEEEEEEEEEEEV---------QEEEEEEEEEE 637
+++ ++E E ++ E + ++E EEEE E + + EE EE E
Sbjct: 80 KIVEEEVKKELELKKRNTLLEANIDDVDTDDENEEEEYEAWKLRELKRIKRDREEREEME 139
Query: 638 EEEEEEEE-----EEEEEEEVRGGGK 658
E+ E E+ EEE E+R K
Sbjct: 140 REKAEIEKMRNMTEEERRAELRKNPK 165
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 48.1 bits (115), Expect = 1e-05
Identities = 35/100 (35%), Positives = 50/100 (50%), Gaps = 2/100 (2%)
Query: 563 NKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE 622
L + IK + I R ENI +LI+ E+E EE E E E E EE
Sbjct: 165 KNLGEVIKEIKRRIERLEKFIK--RTENIEELIKEKEKELEEVLREINEISSELPELREE 222
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E++++E +E EE +EE EE E+E E E + +E+I
Sbjct: 223 LEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIR 262
Score = 46.2 bits (110), Expect = 6e-05
Identities = 31/90 (34%), Positives = 53/90 (58%), Gaps = 1/90 (1%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+E + + ++ E +EE EE E+E E E + + EE+++E EE EE ++E EE EE+
Sbjct: 223 LEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKV 282
Query: 648 EEEEEVRGGGKEEISL-HFYVLYVLSKGKI 676
+E +E++ +E I L FY Y+ +I
Sbjct: 283 KELKELKEKAEEYIKLSEFYEEYLDELREI 312
Score = 45.8 bits (109), Expect = 7e-05
Identities = 23/66 (34%), Positives = 36/66 (54%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + +R E+ EEE EE +E EE+EE ++E +++ +E E+ EE EE E
Sbjct: 303 EEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHE 362
Query: 649 EEEEVR 654
EE +
Sbjct: 363 LYEEAK 368
Score = 43.9 bits (104), Expect = 3e-04
Identities = 27/76 (35%), Positives = 42/76 (55%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E +++ I E E EE E+ E+E +E EE +EE++E E+E E E + + EE+
Sbjct: 201 ELEEVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEK 260
Query: 647 EEEEEEVRGGGKEEIS 662
E EE K+EI
Sbjct: 261 IRELEERIEELKKEIE 276
Score = 43.5 bits (103), Expect = 4e-04
Identities = 28/75 (37%), Positives = 42/75 (56%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
S + + + + + E+E +E EE +EE EE E+E E E ++ EE+ E EE EE +
Sbjct: 213 SSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELK 272
Query: 645 EEEEEEEEVRGGGKE 659
+E EE EE KE
Sbjct: 273 KEIEELEEKVKELKE 287
Score = 43.5 bits (103), Expect = 4e-04
Identities = 26/85 (30%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE--------EEEEE 636
I I + I+ E +EE EE +++ +E E+ EE EE + EE E ++
Sbjct: 320 EEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEELERLKK 379
Query: 637 EEEEEEEEEEEEEEEEVRGGGKEEI 661
E+ E+E EE+ KEEI
Sbjct: 380 RLTGLTPEKLEKELEELE-KAKEEI 403
Score = 43.1 bits (102), Expect = 5e-04
Identities = 24/76 (31%), Positives = 39/76 (51%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++E I+ + E ++E EE EE+ +E +E +E+ EE + E EE +E E E+
Sbjct: 256 KLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDELREIEKR 315
Query: 647 EEEEEEVRGGGKEEIS 662
EE G +E I
Sbjct: 316 LSRLEEEINGIEERIK 331
Score = 42.4 bits (100), Expect = 8e-04
Identities = 23/69 (33%), Positives = 40/69 (57%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E + + I E+E E E + + EE+ E EE EE+++E EE EE+ +E +E +E+
Sbjct: 232 ELEELKEEIEELEKELESLEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEK 291
Query: 647 EEEEEEVRG 655
EE ++
Sbjct: 292 AEEYIKLSE 300
Score = 41.6 bits (98), Expect = 0.002
Identities = 23/75 (30%), Positives = 43/75 (57%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+ + + I E +E EE+EE EE +++ +E E+ ++E EE E EE + ++EE
Sbjct: 315 RLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEAKAKKEEL 374
Query: 647 EEEEEEVRGGGKEEI 661
E ++ + G E++
Sbjct: 375 ERLKKRLTGLTPEKL 389
Score = 40.8 bits (96), Expect = 0.003
Identities = 24/59 (40%), Positives = 37/59 (62%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ EREE+E ++ EEE ++ EE E E+ ++E +E EE E++ EEE EE EE +
Sbjct: 612 KELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLE 670
Score = 40.4 bits (95), Expect = 0.004
Identities = 26/70 (37%), Positives = 39/70 (55%), Gaps = 2/70 (2%)
Query: 596 RRGEREEEEEEEEEEEE--EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
G + + EE+ E EE EE ++E EE EE+V+E +E +E+ EE + E EE +E+
Sbjct: 250 LEGSKRKLEEKIRELEERIEELKKEIEELEEKVKELKELKEKAEEYIKLSEFYEEYLDEL 309
Query: 654 RGGGKEEISL 663
R K L
Sbjct: 310 REIEKRLSRL 319
Score = 39.7 bits (93), Expect = 0.005
Identities = 24/65 (36%), Positives = 40/65 (61%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+++ + + R E+E ++ EEE ++ EE E E+ EE+++E EE E++ EEE EE
Sbjct: 606 ELKDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELR 665
Query: 647 EEEEE 651
EE E
Sbjct: 666 EEYLE 670
Score = 39.7 bits (93), Expect = 0.006
Identities = 19/68 (27%), Positives = 34/68 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++ + + + E EE +E E E+ EEE+ EE +E EE+EE EE
Sbjct: 284 ELKELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEEL 343
Query: 647 EEEEEEVR 654
+++ +E+
Sbjct: 344 KKKLKELE 351
Score = 38.9 bits (91), Expect = 0.010
Identities = 23/70 (32%), Positives = 36/70 (51%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+ E I+L E +E E E+ EEE EE ++E EE+EE EE +++ +E
Sbjct: 290 EKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKE 349
Query: 646 EEEEEEEVRG 655
E+ EE+
Sbjct: 350 LEKRLEELEE 359
Score = 38.9 bits (91), Expect = 0.011
Identities = 26/74 (35%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE---- 642
+ I I E EE E+ E+E +E EE +EE EE+++E E E + + EE
Sbjct: 204 EVLREINEISSELPELREELEKLEKEVKELEELKEEIEELEKELESLEGSKRKLEEKIRE 263
Query: 643 -EE--EEEEEEEEV 653
EE EE ++E E
Sbjct: 264 LEERIEELKKEIEE 277
Score = 38.5 bits (90), Expect = 0.012
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
++ + + EE +E E E+ EEE ++E +E EE+EE EE ++
Sbjct: 286 KELKEKAEEYIKLSEFYEEYLDELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKK 345
Query: 646 EEEEEEE 652
+ +E E+
Sbjct: 346 KLKELEK 352
Score = 38.1 bits (89), Expect = 0.015
Identities = 23/59 (38%), Positives = 35/59 (59%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ +E E EE+E ++ EEE ++ EE E+ EE +E EE E++ EEE EE+R
Sbjct: 608 KDAEKELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELRE 666
Score = 37.7 bits (88), Expect = 0.023
Identities = 19/69 (27%), Positives = 39/69 (56%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
L+ E + E+E +E EE+E + +E E+++ ++E E + +E E+ +E EE++
Sbjct: 453 LLEEYTAELKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKL 512
Query: 654 RGGGKEEIS 662
+ EE+
Sbjct: 513 KKYNLEELE 521
Score = 37.4 bits (87), Expect = 0.031
Identities = 23/84 (27%), Positives = 46/84 (54%), Gaps = 8/84 (9%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE--EEEEVQEEEEEEEEE------EEE 639
++ I + ++ E +E + +E E E+ ++E E + +E+ E+ +E EE+ EE
Sbjct: 461 LKRIEKELKEIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEEL 520
Query: 640 EEEEEEEEEEEEEVRGGGKEEISL 663
E++ EE E+ +E++ E SL
Sbjct: 521 EKKAEEYEKLKEKLIKLKGEIKSL 544
Score = 37.4 bits (87), Expect = 0.032
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E + +++ E E ++ EE E E+ EE +E EE++++ EEE EE EE E
Sbjct: 613 ELEREEKELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELS 672
Query: 647 EE 648
E
Sbjct: 673 RE 674
Score = 35.4 bits (82), Expect = 0.11
Identities = 25/74 (33%), Positives = 40/74 (54%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ I + + R E E EE +E EE+EE EE +++++E E+ EE EE E EE
Sbjct: 308 ELREIEKRLSRLEEEINGIEERIKELEEKEERLEELKKKLKELEKRLEELEERHELYEEA 367
Query: 647 EEEEEEVRGGGKEE 660
+ ++EE+ K
Sbjct: 368 KAKKEELERLKKRL 381
Score = 35.4 bits (82), Expect = 0.12
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 16/93 (17%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEE----------------EEEEEEEEEEEEEEVQEEEE 631
I I I ++E +E ++ EE EE +E EE E++ E+
Sbjct: 407 ISKITARIGELKKEIKELKKAIEELKKAKGKCPVCGRELTEEHRKELLEEYTAELKRIEK 466
Query: 632 EEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
E +E EE+E + +E E E+V E I L
Sbjct: 467 ELKEIEEKERKLRKELRELEKVLKKESELIKLK 499
Score = 35.4 bits (82), Expect = 0.13
Identities = 22/58 (37%), Positives = 35/58 (60%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
I+ ++E E+ EE +++ E E++ +E EEE+ E +E EE E EE EE +E E
Sbjct: 541 IKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELE 598
Score = 35.4 bits (82), Expect = 0.13
Identities = 21/66 (31%), Positives = 31/66 (46%), Gaps = 6/66 (9%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE------EEEEEEEEEEEEEEEEEEEEE 649
+ ++ EEE ++ EE E E+ EE +E++E EEE EE EE E E
Sbjct: 619 KELKKLEEELDKAFEELAETEKRLEELRKELEELEKKYSEEEYEELREEYLELSRELAGL 678
Query: 650 EEEVRG 655
E+
Sbjct: 679 RAELEE 684
Score = 34.3 bits (79), Expect = 0.24
Identities = 20/53 (37%), Positives = 29/53 (54%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EEE EE EE E E E++E E+ EE ++ E+ +EE EE E+ +
Sbjct: 658 EEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAK 710
Score = 33.9 bits (78), Expect = 0.29
Identities = 26/81 (32%), Positives = 35/81 (43%), Gaps = 16/81 (19%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQE----------------EEEEEEEEEEEEE 641
E EEE E +E EE E EE EE ++E E E EE+E ++ E
Sbjct: 566 DELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLE 625
Query: 642 EEEEEEEEEEEVRGGGKEEIS 662
EE ++ EE EE+
Sbjct: 626 EELDKAFEELAETEKRLEELR 646
Score = 33.9 bits (78), Expect = 0.30
Identities = 16/62 (25%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEE-EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E ER ++ E+ E+E EE E+ +EE++EE + E ++E +E
Sbjct: 365 EEAKAKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
Query: 648 EE 649
++
Sbjct: 425 KK 426
Score = 33.9 bits (78), Expect = 0.32
Identities = 17/54 (31%), Positives = 30/54 (55%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
R E+ E+E EE E+ +EE EEE ++ E ++E +E ++ EE ++
Sbjct: 380 RLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKK 433
Score = 33.9 bits (78), Expect = 0.36
Identities = 24/65 (36%), Positives = 35/65 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E++ EEE EE EE E E ++ E EE E+ EE ++ E+ +EE E R K
Sbjct: 651 ELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAK 710
Query: 659 EEISL 663
+E+
Sbjct: 711 KELEK 715
Score = 33.5 bits (77), Expect = 0.40
Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 7/82 (8%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEE-------EEEEEEEVQEEEEEE 633
DE+ E + +L G EE EE +E E E E+E E E +E ++ E
Sbjct: 566 DELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKKLE 625
Query: 634 EEEEEEEEEEEEEEEEEEEVRG 655
EE ++ EE E E+ EE+R
Sbjct: 626 EELDKAFEELAETEKRLEELRK 647
Score = 33.5 bits (77), Expect = 0.40
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
I L + E+ EE +++ E E++ +E EEE E ++E EE E EE EE +E E
Sbjct: 541 IKSLKKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEP 599
Score = 33.5 bits (77), Expect = 0.44
Identities = 16/55 (29%), Positives = 36/55 (65%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E++ EE E+ +E+ + + E + ++E+++ EE +++ E E++ +E EEE E+
Sbjct: 521 EKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAEL 575
Score = 33.1 bits (76), Expect = 0.53
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 2/63 (3%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE--EEEEEEEEEEEEVRGGGKEE 660
++E E+ EE +++ E E++ +E++EE E +E EE E EE EE +E+ E
Sbjct: 545 KKELEKLEELKKKLAELEKKLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEY 604
Query: 661 ISL 663
+ L
Sbjct: 605 LEL 607
Score = 32.7 bits (75), Expect = 0.68
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEE----EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+L ++ EE EE EE E E E EE E+ +EE ++ E+ +EE EE E+ +
Sbjct: 651 ELEKKYSEEEYEELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAK 710
Query: 649 EEEEVRGGGKEEI 661
+E E E +
Sbjct: 711 KELEKLEKALERV 723
Score = 32.3 bits (74), Expect = 0.91
Identities = 22/67 (32%), Positives = 36/67 (53%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + + RE E EE E+ EE ++ E+++EE EE E+ ++E E+ E+ E
Sbjct: 662 EELREEYLELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALE 721
Query: 649 EEEEVRG 655
EE+R
Sbjct: 722 RVEELRE 728
Score = 32.3 bits (74), Expect = 1.00
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 11/71 (15%)
Query: 601 EEEEEEEEEEEEEEEE-----------EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE E++ EE E+ +E+ ++E E+ EE++++ E E++ +E EEE E +
Sbjct: 518 EELEKKAEEYEKLKEKLIKLKGEIKSLKKELEKLEELKKKLAELEKKLDELEEELAELLK 577
Query: 650 EEEVRGGGKEE 660
E E G E
Sbjct: 578 ELEELGFESVE 588
Score = 32.3 bits (74), Expect = 1.1
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 10/65 (15%)
Query: 599 EREEEEEEEEEEEEEEEE---EEEEEEEEEVQEEEEEEEE-------EEEEEEEEEEEEE 648
+ +E EEE E +E EE E EE EE ++E E E E+E E EE+E ++
Sbjct: 564 KLDELEEELAELLKELEELGFESVEELEERLKELEPFYNEYLELKDAEKELEREEKELKK 623
Query: 649 EEEEV 653
EEE+
Sbjct: 624 LEEEL 628
Score = 32.3 bits (74), Expect = 1.1
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++EE E ++ E+ E+E EE+++ +EE EEE + E ++E +
Sbjct: 369 AKKEELERLKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKEL 424
Score = 31.2 bits (71), Expect = 2.2
Identities = 22/93 (23%), Positives = 48/93 (51%), Gaps = 15/93 (16%)
Query: 587 RIENII----QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE---------- 632
+E ++ +LI+ E E+ +E EE+ ++ EE E++ EE ++ +E+
Sbjct: 484 ELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEKLKEKLIKLKGEIKS 543
Query: 633 -EEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
++E E+ EE +++ E E+++ +E L
Sbjct: 544 LKKELEKLEELKKKLAELEKKLDELEEELAELL 576
Score = 30.0 bits (68), Expect = 4.8
Identities = 21/62 (33%), Positives = 36/62 (58%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+L R E EE E+ EE ++ E+ +EE++E E+ ++E E+ E+ E EE E+
Sbjct: 670 ELSRELAGLRAELEELEKRREEIKKTLEKLKEELEEREKAKKELEKLEKALERVEELREK 729
Query: 653 VR 654
V+
Sbjct: 730 VK 731
Score = 29.6 bits (67), Expect = 7.0
Identities = 21/90 (23%), Positives = 45/90 (50%), Gaps = 22/90 (24%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEE-----------EEEEEEEEEEEEEEVQEEEEEEEE 635
IE + +R+ RE E+ ++E E +E EE+ ++ EE++++ EE E+
Sbjct: 470 EIEEKERKLRKELRELEKVLKKESELIKLKELAEQLKELEEKLKKYNLEELEKKAEEYEK 529
Query: 636 EEEE-----------EEEEEEEEEEEEEVR 654
+E+ ++E E+ EE ++++
Sbjct: 530 LKEKLIKLKGEIKSLKKELEKLEELKKKLA 559
>gnl|CDD|234055 TIGR02907, spore_VI_D, stage VI sporulation protein D. SpoVID, the
stage VI sporulation protein D, is restricted to
endospore-forming members of the bacteria, all of which
are found among the Firmicutes. It is widely distributed
but not quite universal in this group. Between
well-conserved N-terminal and C-terminal domains is a
poorly conserved, low-complexity region of variable
length, rich enough in glutamic acid to cause spurious
BLAST search results unless a filter is used. The seed
alignment for this model was trimmed, in effect, by
choosing member sequences in which these regions are
relatively short. SpoVID is involved in spore coat
assembly by the mother cell compartment late in the
process of sporulation [Cellular processes, Sporulation
and germination].
Length = 338
Score = 47.2 bits (112), Expect = 1e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
QL E EEE EE E+E E E E+EE+ ++ E+ ++E+ + ++ EEEEE
Sbjct: 209 QLESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEE 267
Score = 46.0 bits (109), Expect = 4e-05
Identities = 23/63 (36%), Positives = 36/63 (57%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E E EEE EE E+E E E E+EE+ +E+ E+ ++E+ + ++ EEEE +G
Sbjct: 211 ESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGE 270
Query: 657 GKE 659
E
Sbjct: 271 RPE 273
Score = 42.6 bits (100), Expect = 5e-04
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E + E E E EEE EE ++E E E E+EE+ +E+ E+ ++E+ G ++
Sbjct: 206 EPFQLESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKA 261
Score = 42.6 bits (100), Expect = 5e-04
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE-------EEEEEEVRGGG 657
E E E EEE EE E+E E++ E+EE+ +E+ E+ ++E+ + EEE G
Sbjct: 211 ESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKKALEEEEEKGE 270
Query: 658 KEEISLH 664
+ E + +
Sbjct: 271 RPENATY 277
Score = 41.4 bits (97), Expect = 0.001
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E + E E E EEE EE E E E E+EE+ +E+ E+ ++E+ + G K+
Sbjct: 206 EPFQLESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDALAGDAKK 260
Score = 41.0 bits (96), Expect = 0.002
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E+ E+ +++ +E + E + E EV+ EEE EE E+E E E E+EE+ +
Sbjct: 187 EQHEQPADDDPDEWKISASEPFQLESEVEASPEEENYEEYEDETELEVEDEEKAL 241
Score = 41.0 bits (96), Expect = 0.002
Identities = 20/54 (37%), Positives = 27/54 (50%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + E E+EEEEE E E QEE EEE +E + E E E+ E+
Sbjct: 138 QENNLDAEPAREDEEEEESFSAEFEHPAQEETAGEEERTDEPKVEHEAHEQHEQ 191
Score = 40.6 bits (95), Expect = 0.002
Identities = 19/73 (26%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE----EEEEEEEEEEEEEEEEEVRG 655
+EE EEE +E + E E E+ E+ +++ +E + E + E E E EEE
Sbjct: 166 QEETAGEEERTDEPKVEHEAHEQHEQPADDDPDEWKISASEPFQLESEVEASPEEENYEE 225
Query: 656 GGKEEISLHFYVL 668
E +
Sbjct: 226 YEDE----TELEV 234
Score = 38.7 bits (90), Expect = 0.007
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ +E + E + E E E EEE EE E+E E E E+EE+ +E+ E+ +
Sbjct: 195 DDPDEWKISASEPFQLESEVEASPEEENYEEYEDETELEVEDEEKALDEQTEDPQQEDAL 254
Query: 659 EE 660
Sbjct: 255 AG 256
Score = 38.3 bits (89), Expect = 0.010
Identities = 18/57 (31%), Positives = 30/57 (52%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+EEEEE E E +EE EEE +E + E E E+ E+ +++ +E ++
Sbjct: 146 PAREDEEEEESFSAEFEHPAQEETAGEEERTDEPKVEHEAHEQHEQPADDDPDEWKI 202
Score = 37.9 bits (88), Expect = 0.012
Identities = 19/54 (35%), Positives = 29/54 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E E+EEEEE E E +EE EEE +E + E E E+ E+ +++
Sbjct: 143 DAEPAREDEEEEESFSAEFEHPAQEETAGEEERTDEPKVEHEAHEQHEQPADDD 196
Score = 37.2 bits (86), Expect = 0.023
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + +E + E + E E E EE EE E+E E E E+EE+ +E+ E+
Sbjct: 194 DDDPDEWKISASEPFQLESEVEASPEEENYEEYEDETELEVEDEEKALDEQTED 247
Score = 36.0 bits (83), Expect = 0.061
Identities = 18/55 (32%), Positives = 26/55 (47%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++E + E E+EEEEE E E +EE EEE +E + E E+
Sbjct: 137 QQENNLDAEPAREDEEEEESFSAEFEHPAQEETAGEEERTDEPKVEHEAHEQHEQ 191
Score = 35.6 bits (82), Expect = 0.077
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
++E + E E+EEEEE E E +EE EEE +E + E E ++
Sbjct: 137 QQENNLDAEPAREDEEEEESFSAEFEHPAQEETAGEEERTDEPKVEHEAHEQHEQ 191
Score = 30.6 bits (69), Expect = 3.0
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
++E + E ++EEEEE E E +EE EEE K E H
Sbjct: 137 QQENNLDAEPAREDEEEEESFSAEFEHPAQEETAGEEERTDEPKVEHEAH 186
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 47.8 bits (114), Expect = 2e-05
Identities = 28/74 (37%), Positives = 42/74 (56%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E+ +E + + + R + E E EE EE E+E E EEE E ++ EE +EE EE+ E
Sbjct: 477 ELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLE 536
Query: 642 EEEEEEEEEEEVRG 655
+ E EE EE++
Sbjct: 537 KLENLLEELEELKE 550
Score = 46.7 bits (111), Expect = 4e-05
Identities = 25/77 (32%), Positives = 44/77 (57%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ E + +L++ +E + + EE E + E E+ E+ E EEE +E ++ EE +EE+EE
Sbjct: 168 KYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEE 227
Query: 647 EEEEEEVRGGGKEEISL 663
EE E+E+ + L
Sbjct: 228 EELEQEIEALEERLAEL 244
Score = 45.9 bits (109), Expect = 7e-05
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
IE + + +R E EEE E E EE +EE EE+ E+ EE EE +E+ + ++ +E
Sbjct: 502 EIEELEKELR--ELEEELIELLELEEALKEELEEKLEKLENLLEELEELKEKLQLQQLKE 559
Query: 647 EEEEEEVR 654
E + E R
Sbjct: 560 ELRQLEDR 567
Score = 45.5 bits (108), Expect = 9e-05
Identities = 23/68 (33%), Positives = 36/68 (52%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + +L+ E + E EE E E EE EEE E ++E EE E+ + EE E+
Sbjct: 275 ELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKL 334
Query: 647 EEEEEEVR 654
EE+ E++
Sbjct: 335 EEKLEKLE 342
Score = 45.1 bits (107), Expect = 1e-04
Identities = 29/68 (42%), Positives = 40/68 (58%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
S +E+I L+ E E +E ++ EE +EE+EEEE E+E E EE E EEE+E EE
Sbjct: 195 SELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEEL 254
Query: 645 EEEEEEEE 652
+ E E
Sbjct: 255 KARLLEIE 262
Score = 44.8 bits (106), Expect = 1e-04
Identities = 19/85 (22%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
++ +++ + + +R+ E +E +E EE +EE EE++E +E +++ +E
Sbjct: 546 EELKEKLQLQQLKEELRQLEDRLQE-LKELLEELRLLRTRKEELEELRERLKELKKKLKE 604
Query: 640 EEEEEEEEEEEEEVRGGGKEEISLH 664
EE + EE + + E L
Sbjct: 605 LEERLSQLEELLQSLELSEAENELE 629
Score = 44.8 bits (106), Expect = 1e-04
Identities = 23/65 (35%), Positives = 34/65 (52%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+E + + I E E E EE EE E+ + EE +++ EE+ E+ E E EE EE
Sbjct: 292 RLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELEELAEE 351
Query: 647 EEEEE 651
+ E
Sbjct: 352 KNELA 356
Score = 44.8 bits (106), Expect = 2e-04
Identities = 16/64 (25%), Positives = 35/64 (54%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E + +L + + ++ +EE + E+ +E +E EE + +EE EE E +E ++
Sbjct: 541 LLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKK 600
Query: 647 EEEE 650
+ +E
Sbjct: 601 KLKE 604
Score = 44.4 bits (105), Expect = 2e-04
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E +EE EE+ E+ E EE EE +E++Q ++ +EE + E+ +E +E EE
Sbjct: 525 EALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEEL 578
Score = 44.4 bits (105), Expect = 2e-04
Identities = 22/72 (30%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+++L +EE EE+ E+ E EE EE +E+ ++Q+ +EE + E+ +E +E E
Sbjct: 518 IELLELEEA-LKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLE 576
Query: 649 EEEEVRGGGKEE 660
E +R +E
Sbjct: 577 ELRLLRTRKEEL 588
Score = 44.0 bits (104), Expect = 2e-04
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 6/84 (7%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE--- 643
+ I+ + E E+ E+ E EEE +E ++ EE+QEE+EEEE E+E E E
Sbjct: 182 EAKAKIEELEGQLSELLEDIEDLLEALEEELKELKKLEEIQEEQEEEELEQEIEALEERL 241
Query: 644 ---EEEEEEEEEVRGGGKEEISLH 664
EEE+E EE++ E SL
Sbjct: 242 AELEEEKERLEELKARLLEIESLE 265
Score = 43.6 bits (103), Expect = 4e-04
Identities = 28/64 (43%), Positives = 38/64 (59%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ +++L E EEE E+EE E EE EE E+E++E EEE E E EE +EE E
Sbjct: 473 KELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELE 532
Query: 649 EEEE 652
E+ E
Sbjct: 533 EKLE 536
Score = 43.2 bits (102), Expect = 4e-04
Identities = 29/73 (39%), Positives = 37/73 (50%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ E R E + +L R E EE+ E EE E E EE EEE E EE EE E+
Sbjct: 265 ELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKL 324
Query: 640 EEEEEEEEEEEEE 652
+ EE E+ EE+
Sbjct: 325 KSLEERLEKLEEK 337
Score = 43.2 bits (102), Expect = 5e-04
Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++E + E EE +E+ + ++ +EE + E+ +E++E EE +EE EE
Sbjct: 534 KLEKLEN--LLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKEELEEL 591
Query: 647 EEEEEEVR 654
E +E++
Sbjct: 592 RERLKELK 599
Score = 43.2 bits (102), Expect = 5e-04
Identities = 27/82 (32%), Positives = 37/82 (45%), Gaps = 4/82 (4%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E +R E E+E E EEE E E EE +E EE+ E+ E EE EE +E
Sbjct: 491 SREKEEAELREEIEELEKELRELEEELIELLELEEALKEELEEKLEKLENLLEELEELKE 550
Query: 647 ----EEEEEEVRGGGKEEISLH 664
++ +EE+R L
Sbjct: 551 KLQLQQLKEELRQLEDRLQELK 572
Score = 42.8 bits (101), Expect = 6e-04
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEE--EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E + + + + E EE EE +E+ ++ +EE + E+ +QE +E EE +E
Sbjct: 527 LKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRKE 586
Query: 645 EEEEEEEEVR 654
E EE E ++
Sbjct: 587 ELEELRERLK 596
Score = 42.8 bits (101), Expect = 6e-04
Identities = 23/62 (37%), Positives = 31/62 (50%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
++ ++ E E E E EE EE+ E EE E E++E EEE E EE EE
Sbjct: 262 ESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELL 321
Query: 648 EE 649
E+
Sbjct: 322 EK 323
Score = 42.8 bits (101), Expect = 7e-04
Identities = 28/68 (41%), Positives = 37/68 (54%), Gaps = 2/68 (2%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+IE + +L R E EE EEE E EE EE E+ + EE E+ EE+ E+ E E E
Sbjct: 289 KIERLEELER--EIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESELE 346
Query: 647 EEEEEEVR 654
E EE+
Sbjct: 347 ELAEEKNE 354
Score = 42.4 bits (100), Expect = 7e-04
Identities = 27/66 (40%), Positives = 36/66 (54%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E I+ + ERE EE EEE E EE EE E+++ EE E+ EE+ E+ E E
Sbjct: 285 ELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEKLESE 344
Query: 647 EEEEEE 652
EE E
Sbjct: 345 LEELAE 350
Score = 42.4 bits (100), Expect = 9e-04
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEE--EEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E + + + + E EE EE +E+ ++ +EE ++++ +E +E EE
Sbjct: 524 EEALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRT 583
Query: 646 EEEEEEEVR 654
+EE EE+R
Sbjct: 584 RKEELEELR 592
Score = 42.1 bits (99), Expect = 0.001
Identities = 21/63 (33%), Positives = 35/63 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+EE EE+ E+ E EE EE +E+ ++ +EE + E+ +E +E EE + K
Sbjct: 526 ALKEELEEKLEKLENLLEELEELKEKLQLQQLKEELRQLEDRLQELKELLEELRLLRTRK 585
Query: 659 EEI 661
EE+
Sbjct: 586 EEL 588
Score = 42.1 bits (99), Expect = 0.001
Identities = 28/103 (27%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Query: 550 SEWQSLWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEE 609
E + + D + K + + +K + + + +E + + + E EEE
Sbjct: 154 KERKEILDELFGLEKYEKLSELLK--EVIKEAKAKIEELEGQLSELLEDIEDLLEALEEE 211
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E ++ EE +EE+EE + E+E E EE E EEE+E EE
Sbjct: 212 LKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEEL 254
Score = 42.1 bits (99), Expect = 0.001
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%)
Query: 587 RIENIIQLIRR-GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+E +++ ++ ER E+ EE+ E+ E E EE EE+ E + EE +E EE EE E+
Sbjct: 316 ELEELLEKLKSLEERLEKLEEKLEKLESELEELAEEKNELAKLLEERLKELEERLEELEK 375
Query: 646 EEEEEEEVRGGGKEEIS 662
E E+ E +E I
Sbjct: 376 ELEKALERLKQLEEAIQ 392
Score = 41.7 bits (98), Expect = 0.001
Identities = 28/92 (30%), Positives = 44/92 (47%), Gaps = 3/92 (3%)
Query: 564 KLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEE---EEEEEEE 620
KL R + + ++ +E + QL + +EE E E EE EE E
Sbjct: 357 KLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAALEEIQEELEELE 416
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E EE++ E EE EEE ++ EE+ + E +E
Sbjct: 417 KELEELERELEELEEEIKKLEEQINQLESKEL 448
Score = 41.7 bits (98), Expect = 0.001
Identities = 27/66 (40%), Positives = 32/66 (48%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+ I L + EEE E E EE EE+ E EE++ E EE EEE E EE
Sbjct: 257 RLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRALLEE 316
Query: 647 EEEEEE 652
EE E
Sbjct: 317 LEELLE 322
Score = 41.3 bits (97), Expect = 0.002
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E+ ++ + + E EE + EE EE+ EE E E++ E + E EE+ EE+ EE
Sbjct: 634 ELESELE---KLNLQAELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEEL 690
Query: 647 EEEEEEV 653
E+ EEE+
Sbjct: 691 EQLEEEL 697
Score = 41.3 bits (97), Expect = 0.002
Identities = 29/85 (34%), Positives = 42/85 (49%), Gaps = 16/85 (18%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEE----------------EEEEEEEEEVQEEE 630
++E ++Q + E E E EE EEE E E E EE EE+ EE++ E
Sbjct: 611 QLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELEAEI 670
Query: 631 EEEEEEEEEEEEEEEEEEEEEEVRG 655
E + E EE+ EE+ EE E++
Sbjct: 671 RRELQRIENEEQLEEKLEELEQLEE 695
Score = 40.9 bits (96), Expect = 0.002
Identities = 26/64 (40%), Positives = 35/64 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ E E E EE EEE E+EE E +E EE E+E E EEE E E EE ++ +
Sbjct: 473 KELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEALKEELE 532
Query: 659 EEIS 662
E++
Sbjct: 533 EKLE 536
Score = 40.5 bits (95), Expect = 0.003
Identities = 27/66 (40%), Positives = 33/66 (50%), Gaps = 9/66 (13%)
Query: 596 RRGEREEEEEE---------EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E E+E E EEE E+EE E EE EE+++E E EEE E E EE
Sbjct: 467 LPEEHEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEA 526
Query: 647 EEEEEE 652
+EE E
Sbjct: 527 LKEELE 532
Score = 40.5 bits (95), Expect = 0.003
Identities = 36/97 (37%), Positives = 48/97 (49%), Gaps = 8/97 (8%)
Query: 564 KLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGE------REEEEEEEEEEEEEEEEE 617
+L+ + IK K +Q + I +L GE +E EE E+E E E E
Sbjct: 425 ELEELEEEIK--KLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELE 482
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE EEE +E+EE E EE EE E+E E EEE +
Sbjct: 483 LEELEEELSREKEEAELREEIEELEKELRELEEELIE 519
Score = 40.5 bits (95), Expect = 0.003
Identities = 24/73 (32%), Positives = 30/73 (41%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
Q E+E E EE E EEE+E EE + + E E E E + EEE E E
Sbjct: 222 QEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELER 281
Query: 650 EEEVRGGGKEEIS 662
E E +
Sbjct: 282 LLEELEEKIERLE 294
Score = 40.5 bits (95), Expect = 0.004
Identities = 28/57 (49%), Positives = 33/57 (57%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+E E E E EE EEE E+EE E++EE EE E+E E EEE E E EE
Sbjct: 471 HEKELLELYELELEELEEELSREKEEAELREEIEELEKELRELEEELIELLELEEAL 527
Score = 40.1 bits (94), Expect = 0.004
Identities = 25/68 (36%), Positives = 39/68 (57%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++E + IRR + E EE+ EE+ EE E+ EEE E+ +E EE ++ E E+ EE
Sbjct: 662 KVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEEL 721
Query: 647 EEEEEEVR 654
E + E+
Sbjct: 722 ESRKAELE 729
Score = 40.1 bits (94), Expect = 0.004
Identities = 26/73 (35%), Positives = 41/73 (56%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ +L++ E EE+ EE E E E + E EE+++E+ EE E+ EEE E+ EE E
Sbjct: 646 AELEELLQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELE 705
Query: 649 EEEEVRGGGKEEI 661
E + G ++ I
Sbjct: 706 ELLKKLGEIEQLI 718
Score = 40.1 bits (94), Expect = 0.004
Identities = 26/67 (38%), Positives = 36/67 (53%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+E + + I R E E E EE EEE E EE EE +++ + EE E+ EE+ E+
Sbjct: 281 RLLEELEEKIERLEELEREIEELEEELEGLRALLEELEELLEKLKSLEERLEKLEEKLEK 340
Query: 646 EEEEEEE 652
E E EE
Sbjct: 341 LESELEE 347
Score = 39.7 bits (93), Expect = 0.005
Identities = 19/66 (28%), Positives = 33/66 (50%), Gaps = 3/66 (4%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE---EEEEEEEEE 648
++ + R +EE EE E +E +++ +E++E + EE + E E E EE
Sbjct: 571 LKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEE 630
Query: 649 EEEEVR 654
EEE+
Sbjct: 631 AEEELE 636
Score = 39.7 bits (93), Expect = 0.006
Identities = 22/69 (31%), Positives = 35/69 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
I+ + + + EE +EE EE E+E EE E E EE++EE ++ EE+ + E +E
Sbjct: 390 AIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELM 449
Query: 647 EEEEEEVRG 655
E
Sbjct: 450 IAELAGAGE 458
Score = 39.4 bits (92), Expect = 0.007
Identities = 25/66 (37%), Positives = 34/66 (51%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+ + +L++ E E E E EE EEE E E E+ + EE + EE EE+ EE E
Sbjct: 608 RLSQLEELLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELEEKVEELE 667
Query: 647 EEEEEE 652
E E
Sbjct: 668 AEIRRE 673
Score = 39.4 bits (92), Expect = 0.008
Identities = 25/61 (40%), Positives = 31/61 (50%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + +L R E E E + EEE E E EE++E+ E EE E E EE EEE E
Sbjct: 249 ERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELE 308
Query: 649 E 649
Sbjct: 309 G 309
Score = 39.4 bits (92), Expect = 0.008
Identities = 29/87 (33%), Positives = 43/87 (49%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+L E +EE EE E+E EE E E EE EEE+++ EE+ + E +E E E+
Sbjct: 400 ELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEK 459
Query: 653 VRGGGKEEISLHFYVLYVLSKGKIAGL 679
G+E H L L + ++ L
Sbjct: 460 CPVCGQELPEEHEKELLELYELELEEL 486
Score = 39.0 bits (91), Expect = 0.009
Identities = 20/59 (33%), Positives = 31/59 (52%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
L E EE+ E + EE +E EE EE+++E E+ E ++ EE +E +EE
Sbjct: 341 LESELEELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELA 399
Score = 38.6 bits (90), Expect = 0.012
Identities = 28/75 (37%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 587 RIENIIQLIRRGEREEEEEEE------EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
RIEN QL + E E+ EEE E EE ++ E E+ EE++ + E EE ++E
Sbjct: 676 RIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAELEELKKEL 735
Query: 641 EEEEEEEEEEEEVRG 655
E+ E+ E EE+R
Sbjct: 736 EKLEKALELLEELRE 750
Score = 38.2 bits (89), Expect = 0.017
Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE----EEEEEEEEEEE 643
++ ++ + E E E E + E EE+ EE+ EE+++ EEE EE EE ++
Sbjct: 652 LQAALEELEEKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKL 711
Query: 644 EEEEEEEEEVR 654
E E+ EE+
Sbjct: 712 GEIEQLIEELE 722
Score = 37.8 bits (88), Expect = 0.019
Identities = 25/92 (27%), Positives = 44/92 (47%), Gaps = 5/92 (5%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ ++ S +E I + + E+E EE E E EE EEE ++ EE+ +++ +E E
Sbjct: 393 ELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLESKELMIAE 452
Query: 636 EEEEEEEE-----EEEEEEEEEVRGGGKEEIS 662
E+ E EE E+E+ + E+
Sbjct: 453 LAGAGEKCPVCGQELPEEHEKELLELYELELE 484
Score = 37.8 bits (88), Expect = 0.020
Identities = 26/62 (41%), Positives = 32/62 (51%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+L R E E E E + EEE E E ++E EE+ E EE E E EE EEE E
Sbjct: 250 RLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEG 309
Query: 653 VR 654
+R
Sbjct: 310 LR 311
Score = 37.8 bits (88), Expect = 0.023
Identities = 22/59 (37%), Positives = 33/59 (55%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
L+R + E EE E +E +++ +E EE +++E + E E E E EE EEE E E
Sbjct: 580 LLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESE 638
Score = 37.8 bits (88), Expect = 0.024
Identities = 30/85 (35%), Positives = 40/85 (47%), Gaps = 9/85 (10%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEE---------EEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+E I + E E E+ EE E+E E E E++E EEE E+E
Sbjct: 436 LEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLELYELELEELEEELSREKE 495
Query: 639 EEEEEEEEEEEEEEVRGGGKEEISL 663
E E EE EE E+E+R +E I L
Sbjct: 496 EAELREEIEELEKELRELEEELIEL 520
Score = 37.4 bits (87), Expect = 0.024
Identities = 28/81 (34%), Positives = 36/81 (44%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
Q+E +E I+ + E EEE+E EE + E E E E + EEE E E
Sbjct: 222 QEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELER 281
Query: 640 EEEEEEEEEEEEEVRGGGKEE 660
EE EE+ E E EE
Sbjct: 282 LLEELEEKIERLEELEREIEE 302
Score = 37.4 bits (87), Expect = 0.026
Identities = 26/78 (33%), Positives = 38/78 (48%), Gaps = 5/78 (6%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEE-----EEEEEEEVQEEEEEEEEE 636
E + + +L+ +E EE EE E+E E+ E EE +E +E E
Sbjct: 346 EELAEEKNELAKLLEERLKELEERLEELEKELEKALERLKQLEEAIQELKEELAELSAAL 405
Query: 637 EEEEEEEEEEEEEEEEVR 654
EE +EE EE E+E EE+
Sbjct: 406 EEIQEELEELEKELEELE 423
Score = 37.4 bits (87), Expect = 0.028
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + + +E +++ +E EE + EE + ++ E E E EE EEE E E
Sbjct: 580 LLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESEL 639
Query: 647 EEEEEE 652
E+ +
Sbjct: 640 EKLNLQ 645
Score = 37.4 bits (87), Expect = 0.029
Identities = 25/64 (39%), Positives = 31/64 (48%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + + + E E E E + EEE E E + EE EE+ E EE E E EE E
Sbjct: 245 EEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELE 304
Query: 649 EEEE 652
EE E
Sbjct: 305 EELE 308
Score = 37.4 bits (87), Expect = 0.030
Identities = 24/62 (38%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEE-EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
IQ + E E+E E EE E EEE+E EE + + E E E E + EEE E E
Sbjct: 221 IQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELE 280
Query: 651 EE 652
Sbjct: 281 RL 282
Score = 37.0 bits (86), Expect = 0.036
Identities = 26/79 (32%), Positives = 37/79 (46%), Gaps = 4/79 (5%)
Query: 580 QDEIGS--PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE-EE 636
E+ +E + + + E E E E EE EEE E E E++ + E EE +
Sbjct: 595 LKELKKKLKELEERLSQLEE-LLQSLELSEAENELEEAEEELESELEKLNLQAELEELLQ 653
Query: 637 EEEEEEEEEEEEEEEEVRG 655
EE EE+ EE E E+R
Sbjct: 654 AALEELEEKVEELEAEIRR 672
Score = 37.0 bits (86), Expect = 0.036
Identities = 21/63 (33%), Positives = 31/63 (49%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+ + RE +E +++ +E EE + EE + E E E E EE EEE E E
Sbjct: 579 RLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSLELSEAENELEEAEEELESE 638
Query: 647 EEE 649
E+
Sbjct: 639 LEK 641
Score = 37.0 bits (86), Expect = 0.041
Identities = 21/77 (27%), Positives = 40/77 (51%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+ I+ + E+ E+ E +E +E + + EE E ++ E E+ E+ E EEE
Sbjct: 153 PKERKEILDELFGLEKYEKLSELLKEVIKEAKAKIEELEGQLSELLEDIEDLLEALEEEL 212
Query: 645 EEEEEEEEVRGGGKEEI 661
+E ++ EE++ +EE
Sbjct: 213 KELKKLEEIQEEQEEEE 229
Score = 36.7 bits (85), Expect = 0.048
Identities = 22/64 (34%), Positives = 31/64 (48%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++ I+ + EEE E+E E EE E EEE+E + + E E E E + EE
Sbjct: 215 LKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKIREE 274
Query: 649 EEEE 652
E E
Sbjct: 275 ELRE 278
Score = 36.7 bits (85), Expect = 0.050
Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 2/101 (1%)
Query: 564 KLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE 623
+L+ + ++ K ++ + ++ +R +E +++ +E EE + EE +
Sbjct: 560 ELRQLEDRLQELKELLEELRLLRTRKEELEELRERLKELKKKLKELEERLSQLEELLQSL 619
Query: 624 EEVQEEEEEEEEEEEEEEEEE--EEEEEEEEVRGGGKEEIS 662
E + E E EE EEE E E E + E EE+ EE+
Sbjct: 620 ELSEAENELEEAEEELESELEKLNLQAELEELLQAALEELE 660
Score = 36.7 bits (85), Expect = 0.052
Identities = 25/65 (38%), Positives = 31/65 (47%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E +L+ E E + EEE E E EE EE+++ EE E E EE EEE E
Sbjct: 252 EELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLR 311
Query: 648 EEEEE 652
EE
Sbjct: 312 ALLEE 316
Score = 36.3 bits (84), Expect = 0.067
Identities = 25/65 (38%), Positives = 34/65 (52%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++ + +L E +EEEE E+E E EE E EEE+E EE + E E E E +
Sbjct: 211 ELKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALK 270
Query: 647 EEEEE 651
EEE
Sbjct: 271 IREEE 275
Score = 35.9 bits (83), Expect = 0.092
Identities = 28/82 (34%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEE-------EEEEEEVQEEEEEEEEEEEEE 640
IE + + + E E+E EE + E E E EEE E++ EE EE+ E
Sbjct: 234 IEALEERLAELEEEKERLEELKARLLEIESLELEALKIREEELRELERLLEELEEKIERL 293
Query: 641 EEEEEEEEEEEEVRGGGKEEIS 662
EE E E EE EE G + +
Sbjct: 294 EELEREIEELEEELEGLRALLE 315
Score = 35.5 bits (82), Expect = 0.10
Identities = 26/63 (41%), Positives = 37/63 (58%), Gaps = 2/63 (3%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEE--EEEEEEVQEEEEEEEEEEEEEEEEEEE 646
I + ++R E EE+ EE+ EE E+ EEE E EE EE+ ++ E E+ EE E + E
Sbjct: 668 AEIRRELQRIENEEQLEEKLEELEQLEEELEQLREELEELLKKLGEIEQLIEELESRKAE 727
Query: 647 EEE 649
EE
Sbjct: 728 LEE 730
Score = 35.5 bits (82), Expect = 0.10
Identities = 25/63 (39%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE-EEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ +L + E +EE+EEEE E+E E EE E EEE + EE + E E E E +
Sbjct: 212 LKELKKLEEIQEEQEEEELEQEIEALEERLAELEEEKERLEELKARLLEIESLELEALKI 271
Query: 650 EEE 652
EE
Sbjct: 272 REE 274
Score = 35.1 bits (81), Expect = 0.13
Identities = 26/66 (39%), Positives = 31/66 (46%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++ + I E E + EEE E E EE EE+ E EE E E EE EEE E
Sbjct: 253 ELKARLLEIESLELEALKIREEELRELERLLEELEEKIERLEELEREIEELEEELEGLRA 312
Query: 647 EEEEEE 652
EE E
Sbjct: 313 LLEELE 318
Score = 33.6 bits (77), Expect = 0.44
Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 17/104 (16%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEE----------EVQEEEEEEEEE 636
+E + + + E E ++ EE+ + E +E E E+ EE E+E E
Sbjct: 418 ELEELERELEELEEEIKKLEEQINQLESKELMIAELAGAGEKCPVCGQELPEEHEKELLE 477
Query: 637 EEEEE----EEEEEEEEEEEVRGGGKEEISLHFYVLYVLSKGKI 676
E E EEE E+EE +EEI L L + I
Sbjct: 478 LYELELEELEEELSREKEEAEL---REEIEELEKELRELEEELI 518
>gnl|CDD|235668 PRK06007, fliF, flagellar MS-ring protein; Reviewed.
Length = 542
Score = 47.6 bits (114), Expect = 2e-05
Identities = 24/60 (40%), Positives = 32/60 (53%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R EEE EEE EE EE+EE E ++EE EEE+ EEE + E+ + +R
Sbjct: 461 RLRPLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLR 520
Score = 38.7 bits (91), Expect = 0.009
Identities = 24/71 (33%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 586 PRIENIIQLIRRGERE---EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
PR+ ++ E E EE EE+EE E E ++EE E ++ EEE + E+ +
Sbjct: 460 PRLRPLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRL 519
Query: 643 EEEEEEEEEEV 653
E +E+ EEV
Sbjct: 520 RELAKEDPEEV 530
Score = 34.5 bits (80), Expect = 0.22
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+ + EE+EE E E ++EE EEE+ E + + E+ + E
Sbjct: 464 PLLPEEELAEEEAAAEEAALEEDEEAALEVELSDDEELEEEKAEEELKYEDLLKRLRELA 523
Query: 642 EEEEEE 647
+E+ EE
Sbjct: 524 KEDPEE 529
>gnl|CDD|237744 PRK14521, rpsP, 30S ribosomal protein S16; Provisional.
Length = 186
Score = 45.5 bits (108), Expect = 2e-05
Identities = 18/51 (35%), Positives = 22/51 (43%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E++ E E E++ E EE EEEE EE EE EE E
Sbjct: 136 EKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 42.5 bits (100), Expect = 2e-04
Identities = 17/53 (32%), Positives = 22/53 (41%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E++ E E E++ E + EEEE EE EE EE E
Sbjct: 134 EAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 41.7 bits (98), Expect = 4e-04
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E E++ E E E++ E V EE EEEE EE EE EE
Sbjct: 129 KKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEES 184
Score = 40.9 bits (96), Expect = 6e-04
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E++ E E E++ E +E EEEE EE EE EE E
Sbjct: 136 EKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 40.1 bits (94), Expect = 0.001
Identities = 18/52 (34%), Positives = 22/52 (42%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E++ E E E++ E EE EEEE EE EE EE
Sbjct: 134 EAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESA 185
Score = 39.0 bits (91), Expect = 0.003
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ ++ ++ E E++ E E V E++ E EE EEEE EE
Sbjct: 123 KAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEE 173
Score = 37.1 bits (86), Expect = 0.012
Identities = 15/44 (34%), Positives = 18/44 (40%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
R E E++ E EE EEEE + EE EE E
Sbjct: 143 RAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 35.9 bits (83), Expect = 0.031
Identities = 14/63 (22%), Positives = 26/63 (41%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + + + ++ ++ E E++ E E +++ E EE EEEE
Sbjct: 111 EGKVNAKKDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEE 170
Query: 649 EEE 651
EE
Sbjct: 171 AEE 173
Score = 35.5 bits (82), Expect = 0.045
Identities = 13/54 (24%), Positives = 24/54 (44%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ + ++ ++ E E++ E E E++ E EE EEEE E
Sbjct: 119 DKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAE 172
Score = 34.0 bits (78), Expect = 0.14
Identities = 15/46 (32%), Positives = 18/46 (39%), Gaps = 1/46 (2%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE-EEEEVQEEEEEE 633
E + + + E EE EEEE EE EE EE E
Sbjct: 141 EARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAEEAPAEESAE 186
Score = 33.2 bits (76), Expect = 0.22
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ ++ E E++ E E E+ E EE EEEE EE E
Sbjct: 124 AKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAE 177
Score = 32.8 bits (75), Expect = 0.34
Identities = 14/61 (22%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEE--EEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+++ + ++ ++ E E++ E + E E++ E EE EEEE E
Sbjct: 118 KDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEEAEEAPAE 177
Query: 660 E 660
E
Sbjct: 178 E 178
Score = 31.7 bits (72), Expect = 0.89
Identities = 11/53 (20%), Positives = 23/53 (43%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+++ + ++ ++ E E++ E E E++ E EE EEE
Sbjct: 118 KDKLSKAKKAAKKAALEAEKKVNEARAEAVAEKKAAEAAAVAAEEAAAAEEEE 170
>gnl|CDD|169428 PRK08404, PRK08404, V-type ATP synthase subunit H; Validated.
Length = 103
Score = 43.6 bits (103), Expect = 2e-05
Identities = 26/77 (33%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEE-----EEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+E++I+ I + E+E EE E+ +EE + +EE ++ EEE+ ++ EEE ++ E+++
Sbjct: 1 MEDVIKEIVKAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKK 60
Query: 643 EEEEEEEEEEVRGGGKE 659
+E EEE ++ + G KE
Sbjct: 61 KEGEEEAKKILEEGEKE 77
Score = 33.2 bits (76), Expect = 0.087
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
I R +EE ++ EEE ++ EEE ++ E++ +E EEE ++ EE E+E EE + + E
Sbjct: 29 IIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAE 86
Score = 32.8 bits (75), Expect = 0.13
Identities = 21/59 (35%), Positives = 39/59 (66%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+IR+ + E ++ EEE ++ EEE ++ E+++ + EEE ++ EE E+E EE + + EE
Sbjct: 29 IIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEE 87
Score = 32.8 bits (75), Expect = 0.14
Identities = 19/57 (33%), Positives = 38/57 (66%), Gaps = 2/57 (3%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE--EEEEEEEEEEEEEVRGGGKEE 660
+ E+E EE E+ +EE ++ +++ +EE ++ EEE ++ EEE ++ E+ + G+EE
Sbjct: 10 KAEKEAEERIEKAKEEAKKIIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEE 66
Score = 31.3 bits (71), Expect = 0.40
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 591 IIQLIRRGEREEEEEEEEEEEE------EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
II+ + ++ EEE ++ EE E++++E EEE +++ EE E+E EE + + EE
Sbjct: 29 IIRKAKEEAKKIEEEIIKKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEEN 88
Query: 645 EEEEEEEEVR 654
E E ++
Sbjct: 89 FETAVSEAIK 98
Score = 29.0 bits (65), Expect = 2.8
Identities = 19/57 (33%), Positives = 34/57 (59%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++ EEE ++ E++++E EEE ++ E E+E EE + + EE E E + +RG
Sbjct: 46 KKAEEEAQKLIEKKKKEGEEEAKKILEEGEKEIEELKVKAEENFETAVSEAIKLIRG 102
>gnl|CDD|191249 pfam05279, Asp-B-Hydro_N, Aspartyl beta-hydroxylase N-terminal
region. This family includes the N-terminal regions of
the junctin, junctate and aspartyl beta-hydroxylase
proteins. Junctate is an integral ER/SR membrane calcium
binding protein, which comes from an alternatively
spliced form of the same gene that generates aspartyl
beta-hydroxylase and junctin. Aspartyl beta-hydroxylase
catalyzes the post-translational hydroxylation of
aspartic acid or asparagine residues contained within
epidermal growth factor (EGF) domains of proteins.
Length = 240
Score = 46.1 bits (109), Expect = 2e-05
Identities = 16/66 (24%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
R+ +++ EEE +E+ + E+ ++EE+ +E + +E++ E+ ++ +E E G
Sbjct: 95 RKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEA-G 153
Query: 656 GGKEEI 661
EE
Sbjct: 154 KVHEET 159
Score = 44.2 bits (104), Expect = 9e-05
Identities = 14/61 (22%), Positives = 30/61 (49%), Gaps = 4/61 (6%)
Query: 598 GEREEEEEEEEE----EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E + + EEE +E+ + E+ V ++EE+ +E + +E++ E+ +
Sbjct: 86 AEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDD 145
Query: 654 R 654
R
Sbjct: 146 R 146
Score = 43.8 bits (103), Expect = 1e-04
Identities = 18/56 (32%), Positives = 33/56 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+ E+E E+ +E E+ E + E ++V EE+ +EE+ E+ + +EE +E V
Sbjct: 179 EKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVE 234
Score = 43.4 bits (102), Expect = 2e-04
Identities = 17/63 (26%), Positives = 33/63 (52%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
++EE+ +E + +E++ E+ ++ QE E + EE E+ EE E+ + KE
Sbjct: 120 KQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQYKQDMKE 179
Query: 660 EIS 662
+ S
Sbjct: 180 KAS 182
Score = 43.0 bits (101), Expect = 2e-04
Identities = 18/64 (28%), Positives = 37/64 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E+ +++ +E+ E+E E+ +E V++ E + E ++ EE+ +EE+ E K
Sbjct: 166 EETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIK 225
Query: 659 EEIS 662
EE++
Sbjct: 226 EELA 229
Score = 42.2 bits (99), Expect = 4e-04
Identities = 15/63 (23%), Positives = 33/63 (52%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EEE +E+ + E+ ++EE+ +E + +E++ E+ ++ +E E + + E
Sbjct: 102 EEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETED 161
Query: 662 SLH 664
S H
Sbjct: 162 SYH 164
Score = 42.2 bits (99), Expect = 4e-04
Identities = 17/64 (26%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE--EEEEEEEEEEEEEEVRGGGK 658
EE E EEE + + +++ EEEV+E+ + E+ ++EE+ +E + +
Sbjct: 80 EEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLL 139
Query: 659 EEIS 662
E S
Sbjct: 140 AEDS 143
Score = 41.5 bits (97), Expect = 6e-04
Identities = 12/61 (19%), Positives = 29/61 (47%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+E+ + E+ ++EE+ +E ++ E++ E+ ++ +E E + EE
Sbjct: 106 KEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHV 165
Query: 660 E 660
E
Sbjct: 166 E 166
Score = 41.5 bits (97), Expect = 7e-04
Identities = 20/96 (20%), Positives = 44/96 (45%)
Query: 560 PNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEE 619
+L+++ I V K + P+++ L+ + +E E + EE E+
Sbjct: 104 EVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSY 163
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EE ++ +++ +E+ E+E E+ +E E+ R
Sbjct: 164 HVEETASEQYKQDMKEKASEQENEDSKEPVEKAERT 199
Score = 41.5 bits (97), Expect = 7e-04
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++ +E+ E+E E+ +E E+ E E ++ EE+ +EE+ E+ + +E
Sbjct: 169 ASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKE 226
Score = 41.1 bits (96), Expect = 0.001
Identities = 15/59 (25%), Positives = 33/59 (55%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+E+ E+E E+ +E E+ E + ++ EE+ +EE+ E+ + +EE + +E+
Sbjct: 178 KEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQ 236
Score = 41.1 bits (96), Expect = 0.001
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+E E+ +E E+ E + E ++ EE +EE+ E+ + +EE +E EE+
Sbjct: 183 EQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQ 236
Score = 40.7 bits (95), Expect = 0.001
Identities = 16/62 (25%), Positives = 32/62 (51%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
G+ EE E+ EE E+ +++ +E+ E+E E+ +E E+ E + E ++
Sbjct: 153 GKVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYD 212
Query: 658 KE 659
+E
Sbjct: 213 EE 214
Score = 39.9 bits (93), Expect = 0.002
Identities = 13/60 (21%), Positives = 30/60 (50%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E+ ++EE+ +E + +E++ + E+ ++ +E E + EE E+ V E+
Sbjct: 113 LEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVEETASEQ 172
Score = 39.9 bits (93), Expect = 0.003
Identities = 15/67 (22%), Positives = 35/67 (52%), Gaps = 5/67 (7%)
Query: 599 EREEE---EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE--EEEEEEEEEEEEEEEEEEV 653
E E EEE + + +++ EEE +E++Q E+ ++EE+ +E + +E++ +
Sbjct: 79 PEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFL 138
Query: 654 RGGGKEE 660
++
Sbjct: 139 LAEDSDD 145
Score = 39.1 bits (91), Expect = 0.004
Identities = 13/64 (20%), Positives = 29/64 (45%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E+ + E+ ++EE+ +E + + + E+ ++ +E E + EE E +
Sbjct: 107 EQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETEDSYHVE 166
Query: 659 EEIS 662
E S
Sbjct: 167 ETAS 170
Score = 38.8 bits (90), Expect = 0.005
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E+ +E E+ E + E ++ EE+ EE+ E+ + +EE +E EE++
Sbjct: 184 QENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQQ 237
Score = 38.4 bits (89), Expect = 0.007
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E+ +E E+ E + E ++ EE+ +E+ E+ + +EE +E EE++EV
Sbjct: 182 SEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQQEV 239
Score = 38.0 bits (88), Expect = 0.009
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ EE E+ EE E+ +++ +E E+E E+ +E E+ E + E ++
Sbjct: 152 AGKVHEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDD 205
Score = 38.0 bits (88), Expect = 0.009
Identities = 13/68 (19%), Positives = 36/68 (52%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E+ + + +++ +E+ E+E E+ +E E+ + + E ++ EE+ +EE+
Sbjct: 159 TEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDEEDNPV 218
Query: 648 EEEEEVRG 655
E+ + ++
Sbjct: 219 EDSKAIKE 226
Score = 37.6 bits (87), Expect = 0.013
Identities = 15/58 (25%), Positives = 30/58 (51%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE E+ EE E+ +++ + + E+E E+ +E E+ E + E ++V +E
Sbjct: 156 HEETEDSYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTKAETDDVTEEDYDE 213
Score = 37.2 bits (86), Expect = 0.019
Identities = 15/61 (24%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E EE E EEE + + + + EEE +E+ + E+ ++EE+ G +
Sbjct: 73 SEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEED--GPGKEP 130
Query: 660 E 660
+
Sbjct: 131 Q 131
Score = 36.8 bits (85), Expect = 0.022
Identities = 14/99 (14%), Positives = 42/99 (42%), Gaps = 10/99 (10%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEE----------EEEEEE 625
+ ++++ S + ++ +E + +E++ E+ ++ EE E+
Sbjct: 102 EEEVKEQLQSLLEKIVVSKQEEDGPGKEPQLDEDKFLLAEDSDDRQETLEAGKVHEETED 161
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
EE E+ +++ +E+ E+E E+ + ++
Sbjct: 162 SYHVEETASEQYKQDMKEKASEQENEDSKEPVEKAERTK 200
Score = 36.4 bits (84), Expect = 0.030
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 4/62 (6%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEE----EEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E+ E EE E EEE ++ + EEE +E+ + E+ ++E G GK
Sbjct: 69 EKSTSEPTVPPEEAEPHAEEEGQLAVRKTKQKVEEEVKEQLQSLLEKIVVSKQEEDGPGK 128
Query: 659 EE 660
E
Sbjct: 129 EP 130
Score = 33.0 bits (75), Expect = 0.42
Identities = 14/46 (30%), Positives = 29/46 (63%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+ + ER + E ++ EE+ +EE+ E+ + ++EE +E EE++E
Sbjct: 193 VEKAERTKAETDDVTEEDYDEEDNPVEDSKAIKEELAKEPVEEQQE 238
>gnl|CDD|221250 pfam11831, Myb_Cef, pre-mRNA splicing factor component. This
family is a region of the Myb-Related Cdc5p/Cef1
proteins, in fungi, and is part of the pre-mRNA splicing
factor complex.
Length = 363
Score = 47.0 bits (112), Expect = 2e-05
Identities = 20/47 (42%), Positives = 28/47 (59%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ + E E E EEEEEE EE EE EE+ + + + EE +E+EE
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 46.6 bits (111), Expect = 2e-05
Identities = 20/51 (39%), Positives = 29/51 (56%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ + E E E EEEEEE EE E + EE+ + + + EE +E+EE R
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRR 190
Score = 46.2 bits (110), Expect = 3e-05
Identities = 20/47 (42%), Positives = 30/47 (63%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ + E E E EEEEEE EE EEE++E+ + + + EE +E+EE
Sbjct: 140 KPKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 46.2 bits (110), Expect = 3e-05
Identities = 20/41 (48%), Positives = 25/41 (60%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E E EEEEEE EE EEE EE+ + + EE +E+EE
Sbjct: 146 ELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 44.3 bits (105), Expect = 1e-04
Identities = 22/54 (40%), Positives = 32/54 (59%), Gaps = 6/54 (11%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
P+ +N +L E EEEEEE EE EEE EE+ + + ++ EE +E+EE
Sbjct: 139 PKPKNEFEL------ELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 43.9 bits (104), Expect = 2e-04
Identities = 20/46 (43%), Positives = 26/46 (56%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ E E E EEEEEE EE EEE E + + + EE +E+EE
Sbjct: 141 PKNEFELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEE 186
Score = 30.0 bits (68), Expect = 4.0
Identities = 14/86 (16%), Positives = 26/86 (30%), Gaps = 14/86 (16%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEE--------------EVQ 627
E+ P E E EE+ + + + EE +E+EE +
Sbjct: 146 ELELPEEEEEEPEEMEEELEEDAADRDARKRAAEEAKEQEELRRRSQVIQRNLPRPSVLD 205
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEV 653
E + E+ +E+
Sbjct: 206 LIVLRPSVNVPLTELDPAEKLINKEM 231
>gnl|CDD|224495 COG1579, COG1579, Zn-ribbon protein, possibly nucleic acid-binding
[General function prediction only].
Length = 239
Score = 45.8 bits (109), Expect = 2e-05
Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 7/110 (6%)
Query: 564 KLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGERE----EEEEEEEEEEEEEEEEEE 619
++K + K + + I+ + I E E EE E+ E+E E+ +E
Sbjct: 74 RIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERL 133
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYVLY 669
E E+ + E E EEE E EE +E + E KE++ Y
Sbjct: 134 ERLEKNLAEAEARLEEEVAEIREEGQELSSKREEL---KEKLDPELLSEY 180
Score = 36.6 bits (85), Expect = 0.030
Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 14/82 (17%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEE--------------EEEEEEEEEEEVQEEEEE 632
+E++ + + E E +E E + EE E + +E E+E
Sbjct: 53 ELEDLENQVSQLESEIQEIRERIKRAEEKLSAVKDERELRALNIEIQIAKERINSLEDEL 112
Query: 633 EEEEEEEEEEEEEEEEEEEEVR 654
E EE E+ E+E E+ +E +
Sbjct: 113 AELMEEIEKLEKEIEDLKERLE 134
Score = 34.6 bits (80), Expect = 0.12
Identities = 18/61 (29%), Positives = 27/61 (44%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+E E E+ E E EEE E + +E + EE +E+ + E E E +R
Sbjct: 128 DLKERLERLEKNLAEAEARLEEEVAEIREEGQELSSKREELKEKLDPELLSEYERIRKNK 187
Query: 658 K 658
K
Sbjct: 188 K 188
Score = 32.0 bits (73), Expect = 0.85
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE----EEEEEE 642
I+ + R E +E + ++ + E E + E ++ E E+ E + E E +E
Sbjct: 11 AIQKLDLEKDRLEPRIKEIRKALKKAKAELEALNKALEALEIELEDLENQVSQLESEIQE 70
Query: 643 EEEEEEEEEEVRGGGKEE 660
E + EE K+E
Sbjct: 71 IRERIKRAEEKLSAVKDE 88
>gnl|CDD|234017 TIGR02794, tolA_full, TolA protein. TolA couples the inner
membrane complex of itself with TolQ and TolR to the
outer membrane complex of TolB and OprL (also called
Pal). Most of the length of the protein consists of
low-complexity sequence that may differ in both length
and composition from one species to another,
complicating efforts to discriminate TolA (the most
divergent gene in the tol-pal system) from paralogs such
as TonB. Selection of members of the seed alignment and
criteria for setting scoring cutoffs are based largely
conserved operon struction. //The Tol-Pal complex is
required for maintaining outer membrane integrity. Also
involved in transport (uptake) of colicins and
filamentous DNA, and implicated in pathogenesis.
Transport is energized by the proton motive force. TolA
is an inner membrane protein that interacts with
periplasmic TolB and with outer membrane porins ompC,
phoE and lamB [Transport and binding proteins, Other,
Cellular processes, Pathogenesis].
Length = 346
Score = 46.4 bits (110), Expect = 3e-05
Identities = 14/56 (25%), Positives = 34/56 (60%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R ++ E++ EE E++ E+ ++E E+ E+ ++ E+ ++ EE++++ EE
Sbjct: 69 RQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEA 124
Score = 44.1 bits (104), Expect = 1e-04
Identities = 16/75 (21%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 580 QDEIGSPR--IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
Q + + + E +L ++ E E++ E+ ++E E+ E+ Q E+ ++ EE
Sbjct: 57 QQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEE 116
Query: 638 EEEEEEEEEEEEEEE 652
++++ EE + ++ E
Sbjct: 117 KQKQAEEAKAKQAAE 131
Score = 43.3 bits (102), Expect = 3e-04
Identities = 17/63 (26%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE---EEEEEEEEEEEEEEEEEE 649
+L +R E+ ++ E+ ++ EE++++ EE + ++ E + E E E++ +EE +++
Sbjct: 93 ELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQA 152
Query: 650 EEE 652
EEE
Sbjct: 153 EEE 155
Score = 42.9 bits (101), Expect = 4e-04
Identities = 13/55 (23%), Positives = 33/55 (60%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+E+E +++ E++ EE E++ E+ +E E+ E+ ++ E+ ++ EE+ +
Sbjct: 65 KEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQK 119
Score = 42.5 bits (100), Expect = 5e-04
Identities = 14/56 (25%), Positives = 34/56 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++E+E +++ E++ EE E++ E+ Q+E E+ E+ ++ E+ ++ EE +
Sbjct: 63 AKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQ 118
Score = 42.5 bits (100), Expect = 5e-04
Identities = 14/61 (22%), Positives = 37/61 (60%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
IQ ++ ++E+E +++ E++ EE E++ E+ +++E E+ E+ ++ E+ ++
Sbjct: 55 IQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAAKQA 114
Query: 652 E 652
E
Sbjct: 115 E 115
Score = 41.4 bits (97), Expect = 0.001
Identities = 11/55 (20%), Positives = 33/55 (60%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++++ ++E+E +++ E++ EE E+ + E+ ++E E+ E+ ++ E+
Sbjct: 57 QQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQRAAAEKAAKQAEQAA 111
Score = 39.8 bits (93), Expect = 0.003
Identities = 12/53 (22%), Positives = 30/53 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
R++E E+ E+ ++ E+ ++ E ++++ EE + ++ E + + E E E
Sbjct: 89 ARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAE 141
Score = 39.4 bits (92), Expect = 0.004
Identities = 13/57 (22%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE----EEEEEEVR 654
E+ ++E E+ E+ ++ E+ ++ EE++++ EE + ++ E E E E +
Sbjct: 87 EQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKK 143
Score = 39.4 bits (92), Expect = 0.005
Identities = 13/53 (24%), Positives = 28/53 (52%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
R + E+ E+ ++ E+ ++ EE++ Q EE + ++ E + + E E E
Sbjct: 89 ARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAE 141
Score = 38.7 bits (90), Expect = 0.008
Identities = 12/54 (22%), Positives = 29/54 (53%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+ ++E E+ E+ ++ E+ Q EE++++ EE + ++ E + + E
Sbjct: 87 EQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEA 140
Score = 38.3 bits (89), Expect = 0.010
Identities = 12/59 (20%), Positives = 33/59 (55%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R E+ ++E E+ E+ ++ E+ ++ +E++++ EE + ++ E + + E E +
Sbjct: 84 RAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEK 142
Score = 37.9 bits (88), Expect = 0.014
Identities = 12/57 (21%), Positives = 31/57 (54%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+R + ++E E+ E+ ++ E+ + EE++++ EE + ++ E + + E E
Sbjct: 83 QRAAEQARQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAE 139
Score = 37.1 bits (86), Expect = 0.024
Identities = 19/86 (22%), Positives = 40/86 (46%), Gaps = 5/86 (5%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEE-----EEEEEEEEEEEEEVQEEEEEEE 634
E + + E + +++ EE + ++ E E E E++ +EE + Q EEE +
Sbjct: 99 AAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKEEAKKQAEEEAKA 158
Query: 635 EEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ E +++ E +++ E K E
Sbjct: 159 KAAAEAKKKAAEAKKKAEAEAKAKAE 184
Score = 36.7 bits (85), Expect = 0.032
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R+ E E+ E+ ++ E+ ++ EE+++ EE + ++ E + + E E E++ +E
Sbjct: 90 RQKELEQRAAAEKAAKQAEQAAKQAEEKQKQAEEAKAKQAAEAKAKAEAEAEKKAKE 146
Score = 35.6 bits (82), Expect = 0.075
Identities = 16/62 (25%), Positives = 35/62 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E + + E E E++ +EE +++ EEE + + E +++ E +++ E E + + E + K
Sbjct: 131 EAKAKAEAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAK 190
Query: 659 EE 660
E
Sbjct: 191 AE 192
Score = 34.0 bits (78), Expect = 0.24
Identities = 13/53 (24%), Positives = 32/53 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E++ +EE +++ EEE + + E +++ E +++ E E + + E + + + EE
Sbjct: 141 EKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEE 193
Score = 31.3 bits (71), Expect = 1.6
Identities = 9/48 (18%), Positives = 29/48 (60%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ +++++ ++E+E ++ E++ EE E++ E+ ++E E+
Sbjct: 49 AQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELEQ 96
Score = 31.0 bits (70), Expect = 1.9
Identities = 12/52 (23%), Positives = 30/52 (57%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ +EE +++ EEE + + E +++ E +++ E E + + E + + + EE
Sbjct: 142 KKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEE 193
Score = 31.0 bits (70), Expect = 2.4
Identities = 15/73 (20%), Positives = 38/73 (52%), Gaps = 2/73 (2%)
Query: 590 NIIQ--LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
IIQ L+ G ++ +++++ ++E+E +++ Q+ EE E++ E+ ++E E
Sbjct: 36 EIIQAVLVDPGAVAQQANRIQQQKKPAAKKEQERQKKLEQQAEEAEKQRAAEQARQKELE 95
Query: 648 EEEEEVRGGGKEE 660
+ + + E
Sbjct: 96 QRAAAEKAAKQAE 108
Score = 30.2 bits (68), Expect = 3.5
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
Query: 601 EEEEEEEEEEE-----EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E E++ +EE EEE + + E ++ E +++ E E + + E + + + EE
Sbjct: 137 EAEAEKKAKEEAKKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEE 193
Score = 30.2 bits (68), Expect = 3.7
Identities = 11/47 (23%), Positives = 25/47 (53%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EEE + + E +++ E ++ E E + + E + + + EE + + E
Sbjct: 153 EEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAE 199
Score = 29.8 bits (67), Expect = 4.7
Identities = 10/54 (18%), Positives = 29/54 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++ EEE + + E +++ E +++ E + + E + + + EE + + E +
Sbjct: 149 KKQAEEEAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAK 202
Score = 29.8 bits (67), Expect = 4.9
Identities = 10/54 (18%), Positives = 26/54 (48%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + + E +++ E +++ E E + E + + + EE + + E + + E
Sbjct: 155 EAKAKAAAEAKKKAAEAKKKAEAEAKAKAEAKAKAKAEEAKAKAEAAKAKAAAE 208
>gnl|CDD|224969 COG2058, RPP1A, Ribosomal protein L12E/L44/L45/RPP1/RPP2
[Translation, ribosomal structure and biogenesis].
Length = 109
Score = 43.2 bits (102), Expect = 3e-05
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E +E EEEE+EEE EEE ++ G
Sbjct: 77 AEAAAEADEAEEEEKEEEAEEESDDDMLFG 106
Score = 43.2 bits (102), Expect = 4e-05
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E +E EEEE+EEE EEE +
Sbjct: 75 AGAEAAAEADEAEEEEKEEEAEEESDDDMLF 105
Score = 41.2 bits (97), Expect = 1e-04
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E E +E EEEE+EEE EEE ++++ G
Sbjct: 77 AEAAAEADEAEEEEKEEEAEEESDDDMLFG 106
Score = 41.2 bits (97), Expect = 1e-04
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEE 625
E E +E EEEE+EEE EEE ++
Sbjct: 77 AEAAAEADEAEEEEKEEEAEEESDD 101
Score = 41.2 bits (97), Expect = 1e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 40.8 bits (96), Expect = 2e-04
Identities = 13/25 (52%), Positives = 18/25 (72%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEE 625
E E +E EEEE+EEE EEE +++
Sbjct: 78 EAAAEADEAEEEEKEEEAEEESDDD 102
Score = 40.5 bits (95), Expect = 2e-04
Identities = 13/25 (52%), Positives = 16/25 (64%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEE 625
E E +E EEEE+EEE EEE +
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEEESD 100
Score = 40.5 bits (95), Expect = 3e-04
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEE 624
G E +E EEEE+EEE EEE +++
Sbjct: 76 GAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 40.1 bits (94), Expect = 4e-04
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
E E +E EEEE+EEE +EE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 40.1 bits (94), Expect = 4e-04
Identities = 13/32 (40%), Positives = 18/32 (56%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 39.7 bits (93), Expect = 6e-04
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 39.3 bits (92), Expect = 6e-04
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E + +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 39.3 bits (92), Expect = 7e-04
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEE 625
E E +E EEEE+EEE EEE
Sbjct: 74 AAGAEAAAEADEAEEEEKEEEAEEE 98
Score = 39.3 bits (92), Expect = 7e-04
Identities = 13/25 (52%), Positives = 15/25 (60%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEE 652
E E +E EEEE+EEE EEE
Sbjct: 74 AAGAEAAAEADEAEEEEKEEEAEEE 98
Score = 39.3 bits (92), Expect = 7e-04
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E E +E +EEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 39.3 bits (92), Expect = 8e-04
Identities = 13/32 (40%), Positives = 17/32 (53%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E E E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
E E +E EEE +EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.001
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E E + EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.5 bits (90), Expect = 0.002
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E +E EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.2 bits (89), Expect = 0.002
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E E + EEEE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 38.2 bits (89), Expect = 0.002
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E E +E EEEE +EE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 37.8 bits (88), Expect = 0.002
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
G E E +E EEEE+EEE +E +++
Sbjct: 68 GAAAAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 37.8 bits (88), Expect = 0.002
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
E E +E EEEE+EE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEEEEKEEEAEEESDDD 102
Score = 37.8 bits (88), Expect = 0.003
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E E +E EE EE+EEE EEE +++
Sbjct: 71 AAAAAGAEAAAEADEAEE--EEKEEEAEEESDDD 102
Score = 36.6 bits (85), Expect = 0.005
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E +E EEEE+EEE EE
Sbjct: 72 AAAAGAEAAAEADEAEEEEKEEEAEE 97
Score = 34.7 bits (80), Expect = 0.033
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 5/34 (14%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E +E EEEE+EEE +EE
Sbjct: 70 AAAAAAGAEAAAEADEAEEEEKEEEA-----EEE 98
>gnl|CDD|221490 pfam12253, CAF1A, Chromatin assembly factor 1 subunit A. The CAF-1
or chromatin assembly factor-1 consists of three
subunits, and this is the first, or A. The A domain is
uniquely required for the progression of S phase in
mouse cells, independent of its ability to promote
histone deposition but dependent on its ability to
interact with HP1 - heterochromatin protein 1-rich
heterochromatin domains next to centromeres that are
crucial for chromosome segregation during mitosis. This
HP1-CAF-1 interaction module functions as a built-in
replication control for heterochromatin, which, like a
control barrier, has an impact on S-phase progression in
addition to DNA-based checkpoints.
Length = 76
Score = 42.2 bits (100), Expect = 3e-05
Identities = 13/30 (43%), Positives = 25/30 (83%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+ E EEEEE E+++ E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 39.1 bits (92), Expect = 4e-04
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E +EEEE E+ E E+EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 38.0 bits (89), Expect = 0.001
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEE 625
E EEEEE E+ E E+EE+EEE+++++
Sbjct: 47 EWEEEEEGEDLESEDEEDEEEDDDDDM 73
Score = 37.2 bits (87), Expect = 0.002
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
+ E EEEEE E+ E E+EE+EEE++ + +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.003
Identities = 14/30 (46%), Positives = 22/30 (73%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
+ E EEEEE E+ E E+EE+EEE+ ++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.8 bits (86), Expect = 0.003
Identities = 13/30 (43%), Positives = 24/30 (80%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+ E EEEEE E+ E ++EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.4 bits (85), Expect = 0.004
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
+ E EEEEE E+ E E+EE+EE ++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.4 bits (85), Expect = 0.004
Identities = 12/30 (40%), Positives = 23/30 (76%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ E EEEEE E+ E E+EE+ +E+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.0 bits (84), Expect = 0.004
Identities = 13/30 (43%), Positives = 23/30 (76%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+ E EEEEE E+ E E+EE +EE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDDDMD 74
Score = 36.0 bits (84), Expect = 0.005
Identities = 14/27 (51%), Positives = 22/27 (81%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEE 625
+ E EEEEE E+ E E+EE+EEE++++
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEEDDDD 71
Score = 35.7 bits (83), Expect = 0.007
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+ E EEEEE E+ E E+EE+EEE +++++ +
Sbjct: 45 DAEWEEEEEGEDLESEDEEDEEE--DDDDDMD 74
Score = 35.7 bits (83), Expect = 0.007
Identities = 14/32 (43%), Positives = 24/32 (75%), Gaps = 2/32 (6%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+ E EEEEE E+ E E+ EE+EEE+++++ +
Sbjct: 45 DAEWEEEEEGEDLESED--EEDEEEDDDDDMD 74
Score = 35.7 bits (83), Expect = 0.007
Identities = 14/28 (50%), Positives = 20/28 (71%)
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + E EEEEE E+ E E+EE+EEE+
Sbjct: 41 DYDSDAEWEEEEEGEDLESEDEEDEEED 68
Score = 28.7 bits (65), Expect = 1.7
Identities = 9/21 (42%), Positives = 17/21 (80%)
Query: 598 GEREEEEEEEEEEEEEEEEEE 618
GE E E+EE+EEE+++++ +
Sbjct: 54 GEDLESEDEEDEEEDDDDDMD 74
>gnl|CDD|225887 COG3351, FlaD, Putative archaeal flagellar protein D/E [Cell
motility and secretion].
Length = 214
Score = 45.2 bits (107), Expect = 3e-05
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E +E+ EE + ++ ++E EE E ++ +E E+ + EEE E+E+
Sbjct: 21 EELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKV 74
Score = 44.8 bits (106), Expect = 4e-05
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 4/79 (5%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE--EEVQEEEEEEEEEEEEEEEE 643
P +E I+ + EE +E+ EE + ++ ++E EE+ E E+ +E E+ +
Sbjct: 3 PYLEEKIEKAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKVD 62
Query: 644 E--EEEEEEEEVRGGGKEE 660
EE E+E+V +E
Sbjct: 63 SIEEEISEKEKVMSEKLKE 81
Score = 41.8 bits (98), Expect = 4e-04
Identities = 17/68 (25%), Positives = 32/68 (47%), Gaps = 5/68 (7%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E I +L + ++ ++E EE E E+ +E + E+ + EEE E+E+
Sbjct: 21 EELKEKIEEL-----PIQAKKSDDELVEELPERYEQTKENSLIEKVDSIEEEISEKEKVM 75
Query: 645 EEEEEEEE 652
E+ +E
Sbjct: 76 SEKLKEPA 83
Score = 40.2 bits (94), Expect = 0.002
Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+ E + +L ER E+ +E E+ + EEE E+E+V E+ +E +
Sbjct: 33 QAKKSDDELVEELP---ERYEQTKENSLIEKVDSIEEEISEKEKVMSEKLKEPAQMSSTS 89
Query: 642 EEEEEEEEEEEVRGG 656
EEEE++ + EE+
Sbjct: 90 EEEEKKAKLEEIPED 104
Score = 32.1 bits (73), Expect = 0.76
Identities = 15/63 (23%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE--EEEEEEEEEEEEEVRGGGK 658
+ EE+ E+ E+ EE +E+++E + ++ ++E EE E E+ +E
Sbjct: 2 KPYLEEKIEKAEKVTAFALEELKEKIEELPIQAKKSDDELVEELPERYEQTKENSLIEKV 61
Query: 659 EEI 661
+ I
Sbjct: 62 DSI 64
>gnl|CDD|237047 PRK12298, obgE, GTPase CgtA; Reviewed.
Length = 390
Score = 46.4 bits (111), Expect = 3e-05
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE EE EE E E+ E ++ +E+ EE EEE++++ +++ +E+++E V
Sbjct: 333 EENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
Score = 46.0 bits (110), Expect = 5e-05
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
L+ E EE EE E E+ E ++ E EE EEE++++ +++ +E+++E E
Sbjct: 328 LMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
Score = 45.2 bits (108), Expect = 7e-05
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E EE EE E E+ E ++ Q EE EEE++++ +++ +E+++E EV
Sbjct: 334 ENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVEV 386
Score = 45.2 bits (108), Expect = 8e-05
Identities = 17/60 (28%), Positives = 35/60 (58%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+++ I REE EE E E+ E ++ E+ E EEE++++ +++ +E+++E E
Sbjct: 326 WDLMTFIEENPREEAEEAEAPEKVEFMWDDYHREQLEEVEEEDDDDWDDDWDEDDDEGVE 385
Score = 29.8 bits (68), Expect = 5.6
Identities = 17/62 (27%), Positives = 23/62 (37%), Gaps = 12/62 (19%)
Query: 603 EEEEEEEEEEEEEEEEEEEEE------------EEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+EEE EE + E E +E+ + EE EE EE E E+
Sbjct: 289 DEEEAEERAKAIVEALGWEGPVYLISAASGLGVKELCWDLMTFIEENPREEAEEAEAPEK 348
Query: 651 EE 652
E
Sbjct: 349 VE 350
>gnl|CDD|234750 PRK00409, PRK00409, recombination and DNA strand exchange inhibitor
protein; Reviewed.
Length = 782
Score = 46.7 bits (112), Expect = 4e-05
Identities = 23/62 (37%), Positives = 41/62 (66%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + +LI E E E E++ EE E +E E+ +EE++E++E+ +EEE++ EE E+E
Sbjct: 516 EKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEA 575
Query: 649 EE 650
++
Sbjct: 576 QQ 577
Score = 42.9 bits (102), Expect = 6e-04
Identities = 25/68 (36%), Positives = 47/68 (69%), Gaps = 2/68 (2%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE--EE 645
I ++ +L R E++ EE E +E E+ +EE EE++E++QEEE++ EE E+E ++ +E
Sbjct: 522 IASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKE 581
Query: 646 EEEEEEEV 653
++E +E+
Sbjct: 582 AKKEADEI 589
Score = 38.3 bits (90), Expect = 0.015
Identities = 27/76 (35%), Positives = 46/76 (60%), Gaps = 10/76 (13%)
Query: 589 ENIIQLIRRGEREEEEE--------EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE- 639
ENII+ ++ E++E+ EE E E E++ EE E +E ++ +EE EE++E+
Sbjct: 501 ENIIEEAKKLIGEDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKL 560
Query: 640 -EEEEEEEEEEEEEVR 654
EEE++ EE E+E +
Sbjct: 561 QEEEDKLLEEAEKEAQ 576
Score = 35.6 bits (83), Expect = 0.099
Identities = 21/73 (28%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 593 QLIRRGEREEEE-EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
L++ E+ +EE EE++E+ +EEE++ EE E+E Q+ +E ++E +E +E + ++
Sbjct: 541 ALLKEAEKLKEELEEKKEKLQEEEDKLLEEAEKEAQQAIKEAKKEADEIIKELRQLQKGG 600
Query: 652 EVRGGGKEEISLH 664
E I
Sbjct: 601 YASVKAHELIEAR 613
Score = 34.8 bits (81), Expect = 0.18
Identities = 21/63 (33%), Positives = 39/63 (61%), Gaps = 6/63 (9%)
Query: 605 EEEEEEEE-----EEEEEEEEEEEEEVQEEEEEEEEEEEE-EEEEEEEEEEEEEVRGGGK 658
E++E+ E EE E E E++ EE + +E E+ +EE EE++E+ +EEE+++ +
Sbjct: 513 EDKEKLNELIASLEELERELEQKAEEAEALLKEAEKLKEELEEKKEKLQEEEDKLLEEAE 572
Query: 659 EEI 661
+E
Sbjct: 573 KEA 575
>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC,
primarily archaeal type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. It is found
in a single copy and is homodimeric in prokaryotes, but
six paralogs (excluded from this family) are found in
eukarotes, where SMC proteins are heterodimeric. This
family represents the SMC protein of archaea and a few
bacteria (Aquifex, Synechocystis, etc); the SMC of other
bacteria is described by TIGR02168. The N- and
C-terminal domains of this protein are well conserved,
but the central hinge region is skewed in composition
and highly divergent [Cellular processes, Cell division,
DNA metabolism, Chromosome-associated proteins].
Length = 1164
Score = 46.6 bits (111), Expect = 4e-05
Identities = 28/91 (30%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
S +E S RIE ++ I E++ E+E E+E +E +E+ +++E+ + E+E
Sbjct: 801 SKLEEEVS-RIEARLREI---EQKLNRLTLEKEYLEKEIQELQEQRIDLKEQIKSIEKEI 856
Query: 638 EE-----EEEEEEEEEEEEEVRGGGKEEISL 663
E EE EEE EE E +R L
Sbjct: 857 ENLNGKKEELEEELEELEAALRDLESRLGDL 887
Score = 42.7 bits (101), Expect = 6e-04
Identities = 22/68 (32%), Positives = 34/68 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
IE I+ + + E + +E EE EE+ E+E E + +E E EE EE+ + EE
Sbjct: 720 EIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEE 779
Query: 647 EEEEEEVR 654
+ E R
Sbjct: 780 ALNDLEAR 787
Score = 42.7 bits (101), Expect = 6e-04
Identities = 28/88 (31%), Positives = 46/88 (52%), Gaps = 5/88 (5%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEE----EEEEEEEEEEEEEEEEEVQEEEEEE 633
S+ I + R++ + Q + R+ E E+E E+EEE+ +E EE EE++ E+E
Sbjct: 695 SELRRIEN-RLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERLEELEEDLSSLEQEI 753
Query: 634 EEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E + E +E E EE EE +E +
Sbjct: 754 ENVKSELKELEARIEELEEDLHKLEEAL 781
Score = 41.6 bits (98), Expect = 0.001
Identities = 21/81 (25%), Positives = 39/81 (48%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+ RI I + + E E E E E++ E+E +++E +E +E+ +
Sbjct: 786 ARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQEQRIDL 845
Query: 641 EEEEEEEEEEEEVRGGGKEEI 661
+E+ + E+E E G KEE+
Sbjct: 846 KEQIKSIEKEIENLNGKKEEL 866
Score = 41.6 bits (98), Expect = 0.001
Identities = 17/63 (26%), Positives = 31/63 (49%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
IEN+ E E EE E + E + ++E +E++ + E E + EE E + E+
Sbjct: 855 EIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEELEAQIEK 914
Query: 647 EEE 649
+ +
Sbjct: 915 KRK 917
Score = 41.6 bits (98), Expect = 0.002
Identities = 20/71 (28%), Positives = 34/71 (47%), Gaps = 3/71 (4%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE---EEE 643
R+E + + + E+E E + E +E E EE EE+ +++E + E E +
Sbjct: 738 RLEELEEDLSSLEQEIENVKSELKELEARIEELEEDLHKLEEALNDLEARLSHSRIPEIQ 797
Query: 644 EEEEEEEEEVR 654
E + EEEV
Sbjct: 798 AELSKLEEEVS 808
Score = 41.2 bits (97), Expect = 0.002
Identities = 18/82 (21%), Positives = 36/82 (43%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E I+ + + + + + E+E E ++EE EEE EE++ + E + +
Sbjct: 829 EYLEKEIQELQEQRIDLKEQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLK 888
Query: 642 EEEEEEEEEEEVRGGGKEEISL 663
+E +E E + EE+
Sbjct: 889 KERDELEAQLRELERKIEELEA 910
Score = 40.4 bits (95), Expect = 0.004
Identities = 29/83 (34%), Positives = 41/83 (49%), Gaps = 13/83 (15%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+++IG E I ER E+E E E+ EE + E E +++ E EE E E EE
Sbjct: 293 KEKIGELEAE-----IASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIEE 347
Query: 640 E--------EEEEEEEEEEEEVR 654
E EE E +EE E++R
Sbjct: 348 ERKRRDKLTEEYAELKEELEDLR 370
Score = 38.5 bits (90), Expect = 0.014
Identities = 21/66 (31%), Positives = 36/66 (54%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+I++I + I ++EE EEE EE E + E ++++E +E E + E E + EE
Sbjct: 848 QIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIEE 907
Query: 647 EEEEEE 652
E + E
Sbjct: 908 LEAQIE 913
Score = 37.0 bits (86), Expect = 0.039
Identities = 21/66 (31%), Positives = 37/66 (56%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ + +R ER+ EE E + E++ + E + + E ++EE E E+ + E+EE EEE
Sbjct: 891 RDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEE 950
Query: 648 EEEEEV 653
E+V
Sbjct: 951 LSLEDV 956
Score = 37.0 bits (86), Expect = 0.039
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 564 KLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE 623
L + + ++ + E + E I + EEE E+ EE E E+ EE
Sbjct: 215 ALLKEKREYEGYELLKEKEALERQKEAI-----ERQLASLEEELEKLTEEISELEKRLEE 269
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E EE ++ ++ EEE+ +E+ E+
Sbjct: 270 IEQLLEELNKKIKDLGEEEQLRVKEKIGELEA 301
Score = 37.0 bits (86), Expect = 0.043
Identities = 27/83 (32%), Positives = 40/83 (48%), Gaps = 12/83 (14%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEE--------EEEEEEEEEEEEEVQEEEEEEEEEEE 638
R+ + I + E EE E E EEE EE E +EE E+ E EE ++E E
Sbjct: 323 RLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAE 382
Query: 639 EEEEEEEEEEEEEEVRGGGKEEI 661
+E ++ E+ E++ K EI
Sbjct: 383 TRDELKDYREKLEKL----KREI 401
Score = 36.6 bits (85), Expect = 0.046
Identities = 22/78 (28%), Positives = 43/78 (55%), Gaps = 3/78 (3%)
Query: 580 QDEIGSPRIE--NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
++ + + E ++ +RR E +E +E + + E E+E E++++EEE+ +E
Sbjct: 680 RERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEKLKERL 739
Query: 638 EEEEEEEEE-EEEEEEVR 654
EE EE+ E+E E V+
Sbjct: 740 EELEEDLSSLEQEIENVK 757
Score = 36.2 bits (84), Expect = 0.068
Identities = 18/77 (23%), Positives = 29/77 (37%), Gaps = 11/77 (14%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE-----------EEEEEEEE 644
R E EE+ + EE + E E+Q E + EEE E++
Sbjct: 766 RIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLT 825
Query: 645 EEEEEEEEVRGGGKEEI 661
E+E E+ +E+
Sbjct: 826 LEKEYLEKEIQELQEQR 842
Score = 35.8 bits (83), Expect = 0.087
Identities = 19/66 (28%), Positives = 29/66 (43%), Gaps = 7/66 (10%)
Query: 595 IRRGEREEEEE-------EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ E+E E E EEE EE E + E ++E +E E + E E + E
Sbjct: 847 EQIKSIEKEIENLNGKKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELERKIE 906
Query: 648 EEEEEV 653
E E ++
Sbjct: 907 ELEAQI 912
Score = 35.8 bits (83), Expect = 0.098
Identities = 23/74 (31%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE----EEEEEEEEEEEE 648
++ +R EE E+ EE ++ ++ EEE+ V+E+ E E E E E+E E E
Sbjct: 259 EISELEKRLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELE 318
Query: 649 EEEEVRGGGKEEIS 662
+ EE + EI
Sbjct: 319 DAEERLAKLEAEID 332
Score = 35.0 bits (81), Expect = 0.15
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+E+E E ++E E + EEE E++ EE E E+ EE E+ EE ++ + G
Sbjct: 230 KEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGEE 287
Score = 34.7 bits (80), Expect = 0.21
Identities = 16/82 (19%), Positives = 34/82 (41%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
++ + I + E + EEE E E E++ + E+E E+E +E
Sbjct: 778 EEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQE 837
Query: 640 EEEEEEEEEEEEEVRGGGKEEI 661
+E+ + +E+ + E +
Sbjct: 838 LQEQRIDLKEQIKSIEKEIENL 859
Score = 34.7 bits (80), Expect = 0.21
Identities = 21/63 (33%), Positives = 34/63 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E +E+E E ++E E + EEE + EE E E+ EE E+ EE ++++ G+
Sbjct: 227 ELLKEKEALERQKEAIERQLASLEEELEKLTEEISELEKRLEEIEQLLEELNKKIKDLGE 286
Query: 659 EEI 661
EE
Sbjct: 287 EEQ 289
Score = 34.7 bits (80), Expect = 0.22
Identities = 20/58 (34%), Positives = 31/58 (53%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E + +L ++ E EE E E EEE + ++ EE E +EE E+ E EE ++E
Sbjct: 322 ERLAKLEAEIDKLLAEIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKE 379
Score = 34.3 bits (79), Expect = 0.29
Identities = 15/55 (27%), Positives = 21/55 (38%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE EE+ + EE + E + E + E + EEE E E E
Sbjct: 764 EARIEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIE 818
Score = 33.9 bits (78), Expect = 0.37
Identities = 23/74 (31%), Positives = 35/74 (47%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E +++ + E E E E+E E E+ EE + + E E ++ E EE E E E
Sbjct: 287 EEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEELEREIE 346
Query: 649 EEEEVRGGGKEEIS 662
EE + R EE +
Sbjct: 347 EERKRRDKLTEEYA 360
Score = 33.5 bits (77), Expect = 0.48
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
I +L R +R +EE + EE + E ++ E EEE+E++ E +++E +
Sbjct: 398 KREINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKL 457
Query: 648 EEEEEVRGGGKEEIS 662
E+ ++E+
Sbjct: 458 EQLAADLSKYEQELY 472
Score = 33.1 bits (76), Expect = 0.52
Identities = 17/78 (21%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEE--EEEEEEVQEEEEEEEEEEEEEEEEEE 645
+ ++ + E + E + EEE E E E+++ E+E E+E +E +E
Sbjct: 781 LNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTLEKEYLEKEIQELQE 840
Query: 646 EEEEEEEVRGGGKEEISL 663
+ + +E ++EI
Sbjct: 841 QRIDLKEQIKSIEKEIEN 858
Score = 33.1 bits (76), Expect = 0.53
Identities = 23/76 (30%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEE--------EEEEEEEEEEEEEVQEEEEEEEEEEE 638
+E ++ + R E E + E++ + E EEE E E+ E+EE EEE
Sbjct: 893 ELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELS 952
Query: 639 EEEEEEEEEEEEEEVR 654
E+ + E + EEE+R
Sbjct: 953 LEDVQAELQRVEEEIR 968
Score = 33.1 bits (76), Expect = 0.61
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 3/97 (3%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE-EEEEE 644
+E++ ++R E E E +E EE + +E++E+ + EEE + E E
Sbjct: 951 LSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIE 1010
Query: 645 EEEEEEEEVRGGGKEEISLHF-YVLYVLSKGKIAGLF 680
E E+++ EV E I+ +F + LS G L
Sbjct: 1011 EYEKKKREVFMEAFEAINENFNEIFAELSGGT-GELI 1046
Score = 33.1 bits (76), Expect = 0.66
Identities = 21/62 (33%), Positives = 32/62 (51%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
RE E + EE E + E++ + E + E EEE E E+ + E+EE EEE +
Sbjct: 899 RELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIPEEELSLEDVQA 958
Query: 660 EI 661
E+
Sbjct: 959 EL 960
Score = 32.7 bits (75), Expect = 0.73
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+ ++ + E + E E + EE E + E++ + E++ + E EEE E E+ + E
Sbjct: 883 RLGDLKKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGE 942
Query: 647 EEEEEE 652
+EE E
Sbjct: 943 DEEIPE 948
Score = 32.7 bits (75), Expect = 0.75
Identities = 17/56 (30%), Positives = 30/56 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E +EE E+ E EE ++E E +E E+ E+ + E E + E + +EE++
Sbjct: 361 ELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQ 416
Score = 32.3 bits (74), Expect = 0.91
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 9/63 (14%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEV---------QEEEEEEEEEEEEEEEEEEEE 647
+ ER+E E + E E + EE E + E++ + EEE E E+ + E+EE
Sbjct: 888 KKERDELEAQLRELERKIEELEAQIEKKRKRLSELKAKLEALEEELSEIEDPKGEDEEIP 947
Query: 648 EEE 650
EEE
Sbjct: 948 EEE 950
Score = 32.0 bits (73), Expect = 1.3
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 17/77 (22%)
Query: 595 IRRGEREEEEEEEEEEEEE---------EEEEEEEEEEEEVQE--------EEEEEEEEE 637
I E + + EE + E E + E + EEEV E++
Sbjct: 767 IEELEEDLHKLEEALNDLEARLSHSRIPEIQAELSKLEEEVSRIEARLREIEQKLNRLTL 826
Query: 638 EEEEEEEEEEEEEEEVR 654
E+E E+E +E +E+
Sbjct: 827 EKEYLEKEIQELQEQRI 843
Score = 31.6 bits (72), Expect = 1.6
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+R++E+ EE EE EE E + +E +++ E E E+ E + +E+ E G
Sbjct: 169 DRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEKREYEG 225
Score = 31.6 bits (72), Expect = 1.7
Identities = 18/55 (32%), Positives = 29/55 (52%), Gaps = 2/55 (3%)
Query: 597 RGERE--EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
R R+ EE E +EE E+ E EE ++E E +E ++ E+ E+ + E E
Sbjct: 349 RKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINE 403
Score = 31.2 bits (71), Expect = 2.4
Identities = 16/64 (25%), Positives = 36/64 (56%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ ++ I E + E EEE+E++ E +++E + E++ + + E+E + +EE +
Sbjct: 421 ELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDR 480
Query: 647 EEEE 650
E+E
Sbjct: 481 VEKE 484
Score = 30.8 bits (70), Expect = 3.3
Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEE------------EEEEEEVQEEEEEEE 634
R+E I QL+ ++ ++ EEE+ +E+ E E+E E+++ EE
Sbjct: 266 RLEEIEQLLEELNKKIKDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLA 325
Query: 635 EEEEEEEEEEEEEEE-EEEVRGGGKEEISL 663
+ E E ++ E EE E E+ K L
Sbjct: 326 KLEAEIDKLLAEIEELEREIEEERKRRDKL 355
Score = 30.8 bits (70), Expect = 3.4
Identities = 20/72 (27%), Positives = 33/72 (45%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
++G + + I E E E E+E E E+ EE +++ E ++ E EE
Sbjct: 282 KDLGEEEQLRVKEKIGELEAEIASLERSIAEKERELEDAEERLAKLEAEIDKLLAEIEEL 341
Query: 641 EEEEEEEEEEEE 652
E E EEE + +
Sbjct: 342 EREIEEERKRRD 353
Score = 30.8 bits (70), Expect = 3.4
Identities = 16/66 (24%), Positives = 33/66 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ I I E EEE+E++ E +++E + E+ + E+E + +EE + E+
Sbjct: 424 DLNAAIAGIEAKINELEEEKEDKALEIKKQEWKLEQLAADLSKYEQELYDLKEEYDRVEK 483
Query: 647 EEEEEE 652
E + +
Sbjct: 484 ELSKLQ 489
Score = 30.4 bits (69), Expect = 3.7
Identities = 22/57 (38%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE---EEEEEEEEEEVR 654
EE E E+ + E+EE EEE E+VQ E + EEE E +E EE R
Sbjct: 931 EELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRALEPVNMLAIQEYEEVLKR 987
Score = 30.4 bits (69), Expect = 4.1
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E EE ++E E +E ++ E+ E+++ E E + E + +EE + EE
Sbjct: 370 RAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELDRLQEELQRLSEE 421
Score = 30.0 bits (68), Expect = 4.7
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEE--EVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
RR + EE E +EE E+ E EE ++E E ++E ++ E+ E+ + E E + E +
Sbjct: 350 KRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREINELKRELD 409
Query: 653 VRGGGKEEIS 662
+ +S
Sbjct: 410 RLQEELQRLS 419
Score = 30.0 bits (68), Expect = 4.9
Identities = 19/74 (25%), Positives = 34/74 (45%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
I + + R+ E+ EE EE EE E + +E+ ++++ E E+ E + +E+
Sbjct: 161 EIAGVAEFDRKKEKALEELEEVEENIERLDLIIDEKRQQLERLRREREKAERYQALLKEK 220
Query: 647 EEEEEEVRGGGKEE 660
E E KE
Sbjct: 221 REYEGYELLKEKEA 234
Score = 30.0 bits (68), Expect = 5.3
Identities = 17/74 (22%), Positives = 33/74 (44%), Gaps = 4/74 (5%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEE---EEEEEEEEEEEEEEVQEEEEEEEEE 636
+ EI + +L +R EE + E + E EEE+E+ E +++E +
Sbjct: 398 KREIN-ELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKEDKALEIKKQEWK 456
Query: 637 EEEEEEEEEEEEEE 650
E+ + + E+E
Sbjct: 457 LEQLAADLSKYEQE 470
Score = 30.0 bits (68), Expect = 5.4
Identities = 19/66 (28%), Positives = 33/66 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
IE + + I + ++ EE E +EE E+ E EEV +E E +E ++ E+ E+
Sbjct: 337 EIEELEREIEEERKRRDKLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEK 396
Query: 647 EEEEEE 652
+ E
Sbjct: 397 LKREIN 402
Score = 30.0 bits (68), Expect = 5.8
Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 1/71 (1%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
EI R +L +EE E+ E EE ++E E +E+++ E+ E+ + E
Sbjct: 344 EIEEERKRRD-KLTEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKREIN 402
Query: 642 EEEEEEEEEEE 652
E + E + +E
Sbjct: 403 ELKRELDRLQE 413
Score = 29.3 bits (66), Expect = 8.8
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 3/63 (4%)
Query: 593 QLIRRGEREEEEEEEEE---EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+L R ER E + E E E +E +E+ + + E E+E E+ E+EEE+
Sbjct: 675 ELQRLRERLEGLKRELSSLQSELRRIENRLDELSQELSDASRKIGEIEKEIEQLEQEEEK 734
Query: 650 EEE 652
+E
Sbjct: 735 LKE 737
>gnl|CDD|237177 PRK12704, PRK12704, phosphodiesterase; Provisional.
Length = 520
Score = 46.3 bits (111), Expect = 4e-05
Identities = 27/76 (35%), Positives = 49/76 (64%), Gaps = 1/76 (1%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R + +L +R ++EE + + E E+ EEE E++E+E++++++E E++EEE EE EE
Sbjct: 80 RRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEELIEE 139
Query: 647 EEEE-EEVRGGGKEEI 661
+ +E E + G EE
Sbjct: 140 QLQELERISGLTAEEA 155
Score = 39.0 bits (92), Expect = 0.009
Identities = 23/70 (32%), Positives = 43/70 (61%), Gaps = 5/70 (7%)
Query: 589 ENIIQLIRRGEREEEEEEEE----EEEEEEEEEEEEEEEEEVQEEEEE-EEEEEEEEEEE 643
E I +L E+E E E E+ ++EE + + E +++ EEE E++E+E E+++
Sbjct: 64 EEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQ 123
Query: 644 EEEEEEEEEV 653
+E E++EEE+
Sbjct: 124 QELEKKEEEL 133
Score = 36.3 bits (85), Expect = 0.050
Identities = 20/57 (35%), Positives = 38/57 (66%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
RR E ++ E+ ++EE + + E E+ E + E++E+E E++++E E++EEE EE
Sbjct: 79 ERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKEEELEE 135
Score = 36.3 bits (85), Expect = 0.052
Identities = 26/82 (31%), Positives = 44/82 (53%), Gaps = 16/82 (19%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEV----QEE------EEEEEEEEE 638
E + + + E++++E E++EEE EE EE+ +E E + EE E+ EEE
Sbjct: 110 EELEKKEKELEQKQQELEKKEEELEELIEEQLQELERISGLTAEEAKEILLEKVEEEARH 169
Query: 639 E------EEEEEEEEEEEEEVR 654
E E EEE +EE +++ +
Sbjct: 170 EAAVLIKEIEEEAKEEADKKAK 191
Score = 34.4 bits (80), Expect = 0.22
Identities = 21/61 (34%), Positives = 31/61 (50%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EEE + EE ++E E ++E E +EE + E E+E E E ++ E R KEE
Sbjct: 37 EEEAKRILEEAKKEAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEE 96
Query: 661 I 661
Sbjct: 97 N 97
Score = 34.0 bits (79), Expect = 0.25
Identities = 17/54 (31%), Positives = 28/54 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E +EE + E E+E E E+Q+ E+ ++EE + + E E+ EE
Sbjct: 57 EALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREE 110
Score = 33.6 bits (78), Expect = 0.34
Identities = 19/73 (26%), Positives = 37/73 (50%), Gaps = 9/73 (12%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE--------EEEEEEEE 640
+ I++ ++ E E ++E E +EE + E E+E++E E ++EE +
Sbjct: 41 KRILEEAKK-EAEAIKKEALLEAKEEIHKLRNEFEKELRERRNELQKLEKRLLQKEENLD 99
Query: 641 EEEEEEEEEEEEV 653
+ E E+ EEE+
Sbjct: 100 RKLELLEKREEEL 112
Score = 33.2 bits (77), Expect = 0.51
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E E+E E E ++ E+ ++EE + + E E+ EEE E++E+E E+++ KE
Sbjct: 71 NEFEKELRERRNELQKLEKRLLQKEENLDRKLELLEKREEELEKKEKELEQKQQELEKKE 130
Query: 660 E 660
E
Sbjct: 131 E 131
>gnl|CDD|217502 pfam03343, SART-1, SART-1 family. SART-1 is a protein involved in
cell cycle arrest and pre-mRNA splicing. It has been
shown to be a component of U4/U6 x U5 tri-snRNP complex
in human, Schizosaccharomyces pombe and Saccharomyces
cerevisiae. SART-1 is a known tumour antigen in a range
of cancers recognised by T cells.
Length = 603
Score = 46.3 bits (110), Expect = 4e-05
Identities = 22/64 (34%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE--EEEEV 653
+ ++E EE + EE++E+EE+E+ + +V+ + +EE+EEE++E EEE
Sbjct: 411 KPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEEPT 470
Query: 654 RGGG 657
GGG
Sbjct: 471 VGGG 474
Score = 45.5 bits (108), Expect = 8e-05
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE+ E ++E EE + EE++E+EE ++ + + E + +EE+EEE++E +EE
Sbjct: 409 EEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEE 468
Query: 661 ISL 663
++
Sbjct: 469 PTV 471
Score = 44.7 bits (106), Expect = 1e-04
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E EE+ E ++E EE + EE++E+E E+ + + E + +EE+EEE++E +
Sbjct: 406 EPLEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTIL 465
Query: 659 EE 660
EE
Sbjct: 466 EE 467
Score = 42.4 bits (100), Expect = 7e-04
Identities = 23/81 (28%), Positives = 40/81 (49%), Gaps = 16/81 (19%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEE----------------EEEEEEEEEEEEEEVQEEEEE 632
E+I + I E+EEE E + +E EE+ E ++E V+E +
Sbjct: 366 EDIARQIAEERSEDEEEAAENNDNGIVIDETSEFVRSLQKEPLEEKPENKDESVEEISDA 425
Query: 633 EEEEEEEEEEEEEEEEEEEEV 653
EE++E+EE+E+ + + E V
Sbjct: 426 EEDDEDEEDEDGDGDVEMSAV 446
Score = 41.7 bits (98), Expect = 0.001
Identities = 18/54 (33%), Positives = 36/54 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++E EE+ E ++E EE + EE++E +E+E+ + + E + +EE+EEE++
Sbjct: 404 QKEPLEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDK 457
Score = 41.3 bits (97), Expect = 0.002
Identities = 18/63 (28%), Positives = 34/63 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E+ E ++E EE + EE++E+EE+ + + E + +EE+EEE++E +
Sbjct: 408 LEEKPENKDESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEE 467
Query: 659 EEI 661
E
Sbjct: 468 EPT 470
Score = 33.2 bits (76), Expect = 0.46
Identities = 23/109 (21%), Positives = 43/109 (39%), Gaps = 3/109 (2%)
Query: 533 KLCTPEDFKPFVTALMNSEWQSLWDNVPNTNKLKTIRP---SIKVWKTSDQDEIGSPRIE 589
K PED + + + + +N N + S++ ++ E +E
Sbjct: 361 KKLRPEDIARQIAEERSEDEEEAAENNDNGIVIDETSEFVRSLQKEPLEEKPENKDESVE 420
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
I E EE+E+ + + E + +EE+EEE+ + EEE
Sbjct: 421 EISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEEP 469
Score = 32.0 bits (73), Expect = 1.1
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
I + +EE+E+ + + E + +EE+EEE +E EEE
Sbjct: 416 DESVEEISDAEEDDEDEEDEDGDGDVEMSAVDNDEEKEEEDKEAIPSTILEEEP 469
Score = 31.3 bits (71), Expect = 2.2
Identities = 8/40 (20%), Positives = 16/40 (40%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+ +E + E ++ +EE E + + EE E
Sbjct: 21 PVPGAKPGSTKESRDAAAYENWKKRQEEAEAKRKREELRE 60
Score = 30.1 bits (68), Expect = 5.2
Identities = 11/64 (17%), Positives = 25/64 (39%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ +E + E ++ +E E + + EE E+ + E+ E + GG
Sbjct: 19 PLPVPGAKPGSTKESRDAAAYENWKKRQEEAEAKRKREELREKIAKAREKRERNSKLGGI 78
Query: 659 EEIS 662
+ +
Sbjct: 79 KTLG 82
>gnl|CDD|217783 pfam03896, TRAP_alpha, Translocon-associated protein (TRAP), alpha
subunit. The alpha-subunit of the TRAP complex (TRAP
alpha) is a single-spanning membrane protein of the
endoplasmic reticulum (ER) which is found in proximity
of nascent polypeptide chains translocating across the
membrane.
Length = 281
Score = 45.5 bits (108), Expect = 4e-05
Identities = 19/49 (38%), Positives = 31/49 (63%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+ ++ E+EE E++ +E+EE+E V+E+E E EEEE+EE E
Sbjct: 24 GKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 45.1 bits (107), Expect = 6e-05
Identities = 20/55 (36%), Positives = 34/55 (61%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
++ E+EE E++ ++EE+E EE+E E EEEE+EE EV+ + ++ F
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGEVKASPDADTTILF 85
Score = 44.8 bits (106), Expect = 8e-05
Identities = 19/50 (38%), Positives = 30/50 (60%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
G+ ++ E+EE E++ +E+EE+ EE+E E EEEE+EE E
Sbjct: 23 NGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 42.1 bits (99), Expect = 5e-04
Identities = 18/42 (42%), Positives = 27/42 (64%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ E+EE E++ + EE+E EE+E E EEEE+EE E
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 41.7 bits (98), Expect = 7e-04
Identities = 17/42 (40%), Positives = 28/42 (66%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
++ E+EE E++ +E+ ++E EE+E E EEEE+EE E
Sbjct: 31 AQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 41.7 bits (98), Expect = 8e-04
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
L+ G + ++ E+EE E++ +E+E E EE+E E EEEE+EE E
Sbjct: 18 LLTFGNGKGPFASAQDLTEDEEAEDDVVDEDEEDEAVVEEDENELTEEEEDEEGE 72
Score = 33.2 bits (76), Expect = 0.41
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEV 626
+EE+E EE+E E EEEE+EE EV
Sbjct: 48 DEEDEAVVEEDENELTEEEEDEEGEV 73
>gnl|CDD|237284 PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase;
Reviewed.
Length = 460
Score = 46.1 bits (109), Expect = 4e-05
Identities = 16/87 (18%), Positives = 30/87 (34%), Gaps = 4/87 (4%)
Query: 574 VWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
V + +D+D +P +E + E E+ + + + + E EE
Sbjct: 349 VVQVADRDGESTPAVEET----SEADIEREQPGDLAGQAPAAHQVDAEAASAAPEEPAAL 404
Query: 634 EEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E +E E E E+ +E
Sbjct: 405 ASEAHDETEPEVPEKAAPIPDPAKPDE 431
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc
gene is often associated with scpB (TIGR00281) and scpA
genes, where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 46.6 bits (111), Expect = 4e-05
Identities = 27/64 (42%), Positives = 33/64 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
R E E E+ EE + +E E E E++E EE EE EEE E E E EE E K
Sbjct: 736 ARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLK 795
Query: 659 EEIS 662
EE+
Sbjct: 796 EELK 799
Score = 46.2 bits (110), Expect = 6e-05
Identities = 31/78 (39%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 587 RIENIIQLIR----RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
R+E Q++R ER+ EE E + EE E + +E EE E++E+ EE +EE E E
Sbjct: 299 RLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEA 358
Query: 643 EEEEEEEEEEVRGGGKEE 660
E EE E E E EE
Sbjct: 359 ELEELEAELEELESRLEE 376
Score = 45.4 bits (108), Expect = 1e-04
Identities = 29/73 (39%), Positives = 40/73 (54%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
Q +I R+ N+ + + E + EE E + +E EE E EE+ EE++EE E E E EE
Sbjct: 303 QKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEE 362
Query: 640 EEEEEEEEEEEEE 652
E E EE E E
Sbjct: 363 LEAELEELESRLE 375
Score = 45.0 bits (107), Expect = 1e-04
Identities = 23/73 (31%), Positives = 33/73 (45%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + QL + E + ++ E E E+ EE + + +E E E E EE EE E
Sbjct: 712 EELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLE 771
Query: 649 EEEEVRGGGKEEI 661
E EE + EI
Sbjct: 772 EAEEELAEAEAEI 784
Score = 44.7 bits (106), Expect = 2e-04
Identities = 23/71 (32%), Positives = 34/71 (47%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ +L R+ ++ E E E+ EE + +E+ E E E EE EE EE EEE E
Sbjct: 721 LEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEA 780
Query: 651 EEVRGGGKEEI 661
E + +I
Sbjct: 781 EAEIEELEAQI 791
Score = 44.7 bits (106), Expect = 2e-04
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E + + I + +E E E E EE EE EE EEE E + E EE E + E+ +EE +
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
Query: 647 EEEE 650
E
Sbjct: 801 LREA 804
Score = 44.3 bits (105), Expect = 2e-04
Identities = 25/64 (39%), Positives = 35/64 (54%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+I + + + R E E E+ EE + +E E E E EE++E EE EEE E E E EE
Sbjct: 727 QISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEE 786
Query: 647 EEEE 650
E +
Sbjct: 787 LEAQ 790
Score = 43.5 bits (103), Expect = 4e-04
Identities = 25/74 (33%), Positives = 39/74 (52%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+++ +L E+ EE + +E E E E EE EE ++E EEE E E E EE E + E
Sbjct: 733 KDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIE 792
Query: 649 EEEEVRGGGKEEIS 662
+ +E +E +
Sbjct: 793 QLKEELKALREALD 806
Score = 43.1 bits (102), Expect = 5e-04
Identities = 29/64 (45%), Positives = 36/64 (56%), Gaps = 2/64 (3%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R E + Q E ++ EE E +E + E EE EEE EE+QEE E EE EE EE EE
Sbjct: 415 RRERLQQ--EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEE 472
Query: 647 EEEE 650
E+
Sbjct: 473 AEQA 476
Score = 42.4 bits (100), Expect = 0.001
Identities = 29/63 (46%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 591 IIQLIRRGER-EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
I +L R ER E+ E ++E EE ++ EE E +E+Q E EE EEE EE +EE E EE
Sbjct: 402 IERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLEE 461
Query: 650 EEE 652
E
Sbjct: 462 ALE 464
Score = 42.0 bits (99), Expect = 0.001
Identities = 19/66 (28%), Positives = 30/66 (45%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E ++ +R+ E + ++ E E E+ EE + +E E E E EE EE
Sbjct: 709 ELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEE 768
Query: 647 EEEEEE 652
EE E
Sbjct: 769 RLEEAE 774
Score = 41.6 bits (98), Expect = 0.002
Identities = 25/76 (32%), Positives = 33/76 (43%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E L R E E E E+ EE+ EE E+++ E EE EE EE E E E
Sbjct: 817 EEAANLRERLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELE 876
Query: 649 EEEEVRGGGKEEISLH 664
R +E ++L
Sbjct: 877 ALLNERASLEEALALL 892
Score = 41.2 bits (97), Expect = 0.002
Identities = 25/74 (33%), Positives = 34/74 (45%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
I + Q + E + EE E + EE E + +E+ EE E EE+ EE +EE E
Sbjct: 296 EISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELES 355
Query: 647 EEEEEEVRGGGKEE 660
E E E EE
Sbjct: 356 LEAELEELEAELEE 369
Score = 40.8 bits (96), Expect = 0.002
Identities = 22/70 (31%), Positives = 29/70 (41%), Gaps = 1/70 (1%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE-EEEEEEEEEEEEEEEEE 649
+ L + E E+ E E EE EE EE E E++ E EE E EE
Sbjct: 840 LEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEEL 899
Query: 650 EEEVRGGGKE 659
EE+R +
Sbjct: 900 SEELRELESK 909
Score = 40.8 bits (96), Expect = 0.003
Identities = 26/62 (41%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE-EEV 653
+ E + +E EE E EE+ EE +EE E ++ E EE E E EE E EE EE+ E +
Sbjct: 325 LEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLETL 384
Query: 654 RG 655
R
Sbjct: 385 RS 386
Score = 40.4 bits (95), Expect = 0.003
Identities = 24/73 (32%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE-----EEEEEE 641
R+E++ + I + E E EE EE EE E E E + E EE E EE
Sbjct: 839 RLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEE 898
Query: 642 EEEEEEEEEEEVR 654
EE E E +
Sbjct: 899 LSEELRELESKRS 911
Score = 40.4 bits (95), Expect = 0.004
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + + + E + +E E E E EE EE EE +EE E E E EE E + E+
Sbjct: 734 DLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQ 793
Query: 647 EEEE 650
+EE
Sbjct: 794 LKEE 797
Score = 40.4 bits (95), Expect = 0.004
Identities = 22/74 (29%), Positives = 33/74 (44%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E + + + R+ ++ E E E+ EE ++ +E E E E EE EE EE
Sbjct: 713 ELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEELEERLEE 772
Query: 647 EEEEEEVRGGGKEE 660
EEE EE
Sbjct: 773 AEEELAEAEAEIEE 786
Score = 40.0 bits (94), Expect = 0.004
Identities = 32/69 (46%), Positives = 39/69 (56%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
L+ R E EE EE +EE +E EEE EE E+QE EE+ EE E E EEE EE ++
Sbjct: 230 LVLRLEELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE 289
Query: 654 RGGGKEEIS 662
EIS
Sbjct: 290 LYALANEIS 298
Score = 40.0 bits (94), Expect = 0.004
Identities = 27/63 (42%), Positives = 37/63 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E EE ++ EE E +E + E EE EEE++E +EE E EE EE EE EE E+ +
Sbjct: 422 EIEELLKKLEEAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAE 481
Query: 659 EEI 661
E+
Sbjct: 482 REL 484
Score = 40.0 bits (94), Expect = 0.005
Identities = 24/64 (37%), Positives = 34/64 (53%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
RI + + + E E EE EE EE EEE E E E EE++ + E+ +EE + E +E
Sbjct: 748 RIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDE 807
Query: 647 EEEE 650
E
Sbjct: 808 LRAE 811
Score = 39.7 bits (93), Expect = 0.006
Identities = 24/62 (38%), Positives = 33/62 (53%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ +L + + EE E EE+ EE +EE E E E++E E E EE E EE EE+ E
Sbjct: 323 AQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLE 382
Query: 649 EE 650
Sbjct: 383 TL 384
Score = 39.7 bits (93), Expect = 0.006
Identities = 24/64 (37%), Positives = 33/64 (51%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+E++ + I ER E+ EE+ EE E+ E E EE++E EE E E E E
Sbjct: 825 RLESLERRIAATERRLEDLEEQIEELSEDIESLAAEIEELEELIEELESELEALLNERAS 884
Query: 647 EEEE 650
EE
Sbjct: 885 LEEA 888
Score = 38.5 bits (90), Expect = 0.013
Identities = 23/75 (30%), Positives = 33/75 (44%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+E ++ + + +E E E E EE EE EE EE E E E EE E + E+ +E
Sbjct: 737 RLEAEVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKE 796
Query: 647 EEEEEEVRGGGKEEI 661
E +
Sbjct: 797 ELKALREALDELRAE 811
Score = 38.5 bits (90), Expect = 0.013
Identities = 23/74 (31%), Positives = 30/74 (40%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E+I L E EE EE E E E E EE + E EE EE E E +
Sbjct: 852 EDIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRS 911
Query: 649 EEEEVRGGGKEEIS 662
E +E+++
Sbjct: 912 ELRRELEELREKLA 925
Score = 38.5 bits (90), Expect = 0.013
Identities = 22/48 (45%), Positives = 29/48 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ E EE EEE EE +EE E EE EE++EE EE E+ + E E +
Sbjct: 439 QAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQ 486
Score = 38.1 bits (89), Expect = 0.017
Identities = 20/66 (30%), Positives = 32/66 (48%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
IE + + I E + E E+ E +E EE EEE E++++E EE + ++
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLAR 737
Query: 647 EEEEEE 652
E E E
Sbjct: 738 LEAEVE 743
Score = 38.1 bits (89), Expect = 0.017
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E + + + + +E EE + ++ E E E+++E + +E E E E EE
Sbjct: 706 ELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELTELEAEIEE 765
Query: 647 EEEEEE 652
EE E
Sbjct: 766 LEERLE 771
Score = 38.1 bits (89), Expect = 0.018
Identities = 20/64 (31%), Positives = 34/64 (53%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + I R E++++ E E + EE E + EE++ + +E EE E EE+ EE
Sbjct: 289 ELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEE 348
Query: 647 EEEE 650
+EE
Sbjct: 349 LKEE 352
Score = 37.0 bits (86), Expect = 0.042
Identities = 21/64 (32%), Positives = 26/64 (40%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
IE++ I E EE E E E E EE ++ E EE EE E E + E
Sbjct: 853 DIESLAAEIEELEELIEELESELEALLNERASLEEALALLRSELEELSEELRELESKRSE 912
Query: 647 EEEE 650
E
Sbjct: 913 LRRE 916
Score = 36.6 bits (85), Expect = 0.049
Identities = 23/54 (42%), Positives = 32/54 (59%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+L E +EE +E EEE EE E +E EE+++E E E EEE EE ++E
Sbjct: 236 ELREELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKE 289
Score = 36.6 bits (85), Expect = 0.050
Identities = 24/77 (31%), Positives = 34/77 (44%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+E+ S E +L E+ EE +EE E E E EE E E EE EE EE+ E
Sbjct: 324 QLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELESRLEELEEQLET 383
Query: 639 EEEEEEEEEEEEEEVRG 655
+ + E + +
Sbjct: 384 LRSKVAQLELQIASLNN 400
Score = 36.6 bits (85), Expect = 0.052
Identities = 26/73 (35%), Positives = 33/73 (45%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
E +E ++ + E EE E EE+ EE +EE E E EE E E EE E
Sbjct: 312 ANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE 371
Query: 639 EEEEEEEEEEEEE 651
EE EE+ E
Sbjct: 372 SRLEELEEQLETL 384
Score = 36.6 bits (85), Expect = 0.059
Identities = 20/56 (35%), Positives = 24/56 (42%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E EE EEE E E E EE E + E +EE + E +E E EE
Sbjct: 763 IEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEE 818
Score = 36.2 bits (84), Expect = 0.067
Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%)
Query: 593 QLIRRGEREEE-EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ R R E E+ E ++E EE ++ EE E++E + E EE EEE EE +EE E E
Sbjct: 401 EIERLEARLERLEDRRERLQQEIEELLKKLEEAELKELQAELEELEEELEELQEELERLE 460
Query: 652 E 652
E
Sbjct: 461 E 461
Score = 35.4 bits (82), Expect = 0.13
Identities = 23/78 (29%), Positives = 35/78 (44%)
Query: 573 KVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
+V + ++ S + + I E EE EEE E E E EE E + E+++EE +
Sbjct: 741 EVEQLEERIAQLSKELTELEAEIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKA 800
Query: 633 EEEEEEEEEEEEEEEEEE 650
E +E E EE
Sbjct: 801 LREALDELRAELTLLNEE 818
Score = 35.0 bits (81), Expect = 0.17
Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
Query: 592 IQLIR-RGEREEEEEEEEEEEEEEEEEEEE--EEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
L R E EE EEE E+ +E EE + +++ E E E+ EE + +E
Sbjct: 698 KALAELRKELEELEEELEQLRKELEELSRQISALRKDLARLEAEVEQLEERIAQLSKELT 757
Query: 649 EEEEVRGGGKEEIS 662
E E +E +
Sbjct: 758 ELEAEIEELEERLE 771
Score = 34.6 bits (80), Expect = 0.21
Identities = 19/64 (29%), Positives = 33/64 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
R E++++ E E + EE E +++E E + +E EE E EE+ EE +E +
Sbjct: 298 SRLEQQKQILRERLANLERQLEELEAQLEELESKLDELAEELAELEEKLEELKEELESLE 357
Query: 659 EEIS 662
E+
Sbjct: 358 AELE 361
Score = 34.3 bits (79), Expect = 0.23
Identities = 22/59 (37%), Positives = 26/59 (44%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E EE EE EEE E E E EE E + Q +EE + E +E E EE
Sbjct: 762 EIEELEERLEEAEEELAEAEAEIEELEAQIEQLKEELKALREALDELRAELTLLNEEAA 820
Score = 34.3 bits (79), Expect = 0.30
Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 9/76 (11%)
Query: 587 RIENIIQLIR-RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE--------EEEEE 637
RI+N+ + + EE E E + E++EEE + ++ + +E EE E
Sbjct: 937 RIDNLQERLSEEYSLTLEEAEALENKIEDDEEEARRRLKRLENKIKELGPVNLAAIEEYE 996
Query: 638 EEEEEEEEEEEEEEEV 653
E +E + ++E++
Sbjct: 997 ELKERYDFLTAQKEDL 1012
Score = 33.5 bits (77), Expect = 0.52
Identities = 16/48 (33%), Positives = 22/48 (45%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E E EE E E EE E EE++E+ E + + E + E
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
Score = 32.7 bits (75), Expect = 0.73
Identities = 18/54 (33%), Positives = 24/54 (44%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E E EE E E EE E EE EE+++ + + E + E E E
Sbjct: 354 ESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIERLEA 407
Score = 32.3 bits (74), Expect = 0.96
Identities = 17/54 (31%), Positives = 24/54 (44%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+EE E E E EE E E EE E + EE+ E + + E + E+
Sbjct: 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNEIE 403
Score = 32.3 bits (74), Expect = 1.1
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E EE EE+ EE EE+ E E+ + E +E EE EEE E+ +E EE +++++
Sbjct: 678 EIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQISALRKDLA 736
Score = 32.0 bits (73), Expect = 1.3
Identities = 18/52 (34%), Positives = 23/52 (44%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+EE E E E EE E E EE E E EE+ E + + E + E
Sbjct: 350 KEELESLEAELEELEAELEELESRLEELEEQLETLRSKVAQLELQIASLNNE 401
Score = 32.0 bits (73), Expect = 1.4
Identities = 23/52 (44%), Positives = 32/52 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
RE EE EE+ EE EE+ E E+ E+++E EE EEE E+ +E EE +
Sbjct: 676 RREIEELEEKIEELEEKIAELEKALAELRKELEELEEELEQLRKELEELSRQ 727
Score = 31.6 bits (72), Expect = 1.6
Identities = 20/67 (29%), Positives = 36/67 (53%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E + + ++ E E EE E +E EE+ EE E E++EE EE ++E E
Sbjct: 240 ELEELQEELKEAEEELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISR 299
Query: 647 EEEEEEV 653
E+++++
Sbjct: 300 LEQQKQI 306
Score = 30.8 bits (70), Expect = 3.2
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+++L E EE +EE +E E EE EE E +E++E+ EE E E EEE EE ++E
Sbjct: 231 VLRLEELREELEELQEELKEAE-EELEELTAELQELEEKLEELRLEVSELEEEIEELQKE 289
Score = 30.4 bits (69), Expect = 4.6
Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 11/71 (15%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE-----------EEEEEEEEEEEE 641
+ + E +E EE+ EE E E EEE EE+Q+E E++++ E
Sbjct: 253 EELEELTAELQELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLA 312
Query: 642 EEEEEEEEEEE 652
E + EE E
Sbjct: 313 NLERQLEELEA 323
Score = 29.6 bits (67), Expect = 7.2
Identities = 19/66 (28%), Positives = 31/66 (46%), Gaps = 12/66 (18%)
Query: 597 RGEREEEEEEEEEEEE------------EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
R E E EEE EE ++ E++++ E ++ + EE E + EE E +
Sbjct: 273 RLEVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKL 332
Query: 645 EEEEEE 650
+E EE
Sbjct: 333 DELAEE 338
Score = 29.3 bits (66), Expect = 8.2
Identities = 16/68 (23%), Positives = 26/68 (38%), Gaps = 4/68 (5%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEE----EEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+++ ++ +R E E EE E E E + E+ EE+ EE E
Sbjct: 793 QLKEELKALREALDELRAELTLLNEEAANLRERLESLERRIAATERRLEDLEEQIEELSE 852
Query: 643 EEEEEEEE 650
+ E E
Sbjct: 853 DIESLAAE 860
Score = 29.3 bits (66), Expect = 9.0
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 15/71 (21%)
Query: 596 RRGEREEEEEE---------------EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E EEE EE E++++ E E + E E + EE E + +E
Sbjct: 275 EVSELEEEIEELQKELYALANEISRLEQQKQILRERLANLERQLEELEAQLEELESKLDE 334
Query: 641 EEEEEEEEEEE 651
EE E EE+
Sbjct: 335 LAEELAELEEK 345
>gnl|CDD|219069 pfam06512, Na_trans_assoc, Sodium ion transport-associated.
Members of this family contain a region found
exclusively in eukaryotic sodium channels or their
subunits, many of which are voltage-gated. Members very
often also contain between one and four copies of
pfam00520 and, less often, one copy of pfam00612.
Length = 230
Score = 45.1 bits (107), Expect = 5e-05
Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 11/70 (15%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE-----------EEEEEEE 643
I GE + E +E+ E +EE ++ E + EE++ E EEEE
Sbjct: 107 IASGESDLENLNDEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEE 166
Query: 644 EEEEEEEEEV 653
EE EEEEEV
Sbjct: 167 EEIAEEEEEV 176
Score = 31.6 bits (72), Expect = 0.99
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
Query: 577 TSDQDEIGSPR-IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
D S E + + EE++ E + E EEEEEE+ EEEEE +E
Sbjct: 119 DEDTSSESSYGFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKE 178
Query: 636 EEE 638
E+
Sbjct: 179 PED 181
Score = 28.5 bits (64), Expect = 9.0
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 11/53 (20%)
Query: 598 GEREEEEEEEEEEEEEEEEE-----------EEEEEEEEVQEEEEEEEEEEEE 639
G +EE ++ E + EE++ E EEEEE EEEEE +E E+
Sbjct: 129 GFKEESKKGSAETLKLEEKDSSSSEGSTVDLEPPEEEEEEIAEEEEEVKEPED 181
>gnl|CDD|214818 smart00784, SPT2, SPT2 chromatin protein. This entry includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 106
Score = 42.7 bits (101), Expect = 5e-05
Identities = 14/53 (26%), Positives = 28/53 (52%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+R ++++++++ E + +EEE E+ EEE E+EEE E+
Sbjct: 50 KRYAYRDDDDDDDDMEAGGADIQEEERRSARLARLEDREEERLEKEEEREKRA 102
Score = 42.4 bits (100), Expect = 6e-05
Identities = 23/93 (24%), Positives = 40/93 (43%), Gaps = 34/93 (36%)
Query: 596 RRGEREEEEEEEEE---EEEEEEEEEEEEE---------------------------EEE 625
R + +EEE+E+ + E+++EE++ + +E +
Sbjct: 11 SRDDYDEEEDEDMDDFIEDDDEEDDYDRDEIWAMFNKGRKRYAYRDDDDDDDDMEAGGAD 70
Query: 626 VQEEEEEEE----EEEEEEEEEEEEEEEEEEVR 654
+QEEE E+ EEE E+EEE E+ R
Sbjct: 71 IQEEERRSARLARLEDREEERLEKEEEREKRAR 103
>gnl|CDD|218115 pfam04502, DUF572, Family of unknown function (DUF572). Family of
eukaryotic proteins with undetermined function.
Length = 321
Score = 45.5 bits (108), Expect = 5e-05
Identities = 28/101 (27%), Positives = 39/101 (38%), Gaps = 36/101 (35%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEE---------------EEEVQEEEEE-------- 632
R ++ +EE+EE E+E EEE E EV E EE
Sbjct: 105 TRNYEADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRR 164
Query: 633 -------------EEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E++EEEEEEEE+E + + G + E
Sbjct: 165 ADVDVNSMLEALFRREKKEEEEEEEEDEALIKSLSFGPETE 205
Score = 41.3 bits (97), Expect = 0.001
Identities = 17/46 (36%), Positives = 29/46 (63%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E++EEEEEEEE+E + + E EE+ ++E+ E++EE+
Sbjct: 178 RREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDN 223
Score = 40.9 bits (96), Expect = 0.001
Identities = 18/56 (32%), Positives = 30/56 (53%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E++EEEEEEEE+E + E EE+ ++E+ E++EE+ + G
Sbjct: 178 RREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSGS 233
Score = 40.1 bits (94), Expect = 0.002
Identities = 17/55 (30%), Positives = 31/55 (56%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E++EEEEEEEE+E + + EE+ ++E+ E++EE+ + + G
Sbjct: 178 RREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSPKSG 232
Score = 39.7 bits (93), Expect = 0.003
Identities = 18/59 (30%), Positives = 32/59 (54%), Gaps = 6/59 (10%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEE------EEEEEEEVQEEEEEEEEEEEEEEEEEE 645
++ R E++EEEEEEEE+E + E EE+ ++E+ E++EE+ +
Sbjct: 171 SMLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSP 229
Score = 39.3 bits (92), Expect = 0.004
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
R E++EEEEEEEE+E + E EE + ++E+ E++EE+ +
Sbjct: 177 FRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSEDDEEDNDNTPSP 229
Score = 35.1 bits (81), Expect = 0.091
Identities = 21/110 (19%), Positives = 33/110 (30%), Gaps = 46/110 (41%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEE------------------------------------- 619
++ +EE+EE E+E EEE
Sbjct: 109 EADKLDEEQEERVEKEREEELAGDAMKKLENRTADSKREMEVLERLEELKELQSRRADVD 168
Query: 620 ---------EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E++E +EEEEE+E + E EE+ E+
Sbjct: 169 VNSMLEALFRREKKEEEEEEEEDEALIKSLSFGPETEEDRRRADDEDSED 218
>gnl|CDD|220376 pfam09745, DUF2040, Coiled-coil domain-containing protein 55
(DUF2040). This entry is a conserved domain of
approximately 130 residues of proteins conserved from
fungi to humans. The proteins do contain a coiled-coil
domain, but the function is unknown.
Length = 128
Score = 42.8 bits (101), Expect = 6e-05
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 6/101 (5%)
Query: 564 KLKTIRPSIKVWKTSDQDEIGSPR-IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE 622
+K + K K S++ E P+ I ++++ R +RE E EE + ++E E+E +E
Sbjct: 26 SIKAAKEEKKQAKLSERKENRKPKYIGSLLEAAERRKREREIAEERKLQKEREKEGDEFA 85
Query: 623 EEEV-----QEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++E +++ EE + EEEE+E EE EEE +V G
Sbjct: 86 DKEKFVTSAYKKQLEENRKLEEEEKEREELEEENDVTKGKD 126
>gnl|CDD|222648 pfam14283, DUF4366, Domain of unknown function (DUF4366). This
family of proteins is found in bacteria and eukaryotes.
Proteins in this family are typically between 227 and
387 amino acids in length.
Length = 213
Score = 44.6 bits (106), Expect = 6e-05
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EEE+ V E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 43.9 bits (104), Expect = 1e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 43.5 bits (103), Expect = 1e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 43.1 bits (102), Expect = 2e-04
Identities = 13/40 (32%), Positives = 15/40 (37%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EEE+ V E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 42.7 bits (101), Expect = 2e-04
Identities = 14/45 (31%), Positives = 16/45 (35%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
EEE+ E E E E E EEE E+ G G
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMG 159
Score = 41.9 bits (99), Expect = 4e-04
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
EEE+ E + E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 41.6 bits (98), Expect = 6e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 40.8 bits (96), Expect = 8e-04
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 40.8 bits (96), Expect = 0.001
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 40.8 bits (96), Expect = 0.001
Identities = 12/40 (30%), Positives = 15/40 (37%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
EEE+ + E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 40.4 bits (95), Expect = 0.001
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 29/81 (35%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEV-----------------------------QEEEE 631
E E E E E EEE E+ Q+E+
Sbjct: 130 CSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQEKG 189
Query: 632 EEEEEEEEEEEEEEEEEEEEE 652
+++ +E + +E+EEE++E
Sbjct: 190 APDDDLDEYDYGDEDEEEDDE 210
Score = 40.4 bits (95), Expect = 0.001
Identities = 12/40 (30%), Positives = 14/40 (35%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
EEE+ E E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 40.4 bits (95), Expect = 0.001
Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 31/83 (37%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEE-------------------------------EVQEE 629
E E E E E EEE E+ + +
Sbjct: 131 SVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQEKGA 190
Query: 630 EEEEEEEEEEEEEEEEEEEEEEE 652
+++ +E + +E+EEE++E
Sbjct: 191 PDDDLDEYDYGDEDEEEDDEPPW 213
Score = 40.0 bits (94), Expect = 0.002
Identities = 11/40 (27%), Positives = 13/40 (32%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
EEE+ E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 40.0 bits (94), Expect = 0.002
Identities = 11/40 (27%), Positives = 14/40 (35%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
EEE+ + E E E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 38.5 bits (90), Expect = 0.005
Identities = 10/40 (25%), Positives = 13/40 (32%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
E E+ E E + E E EEE E+
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEK 154
Score = 37.3 bits (87), Expect = 0.012
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 32/83 (38%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEE--------------------------------EEEV 626
E E E E E EEE E+ E+
Sbjct: 131 SVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGAYYYFKFYKPKQQEKGA 190
Query: 627 QEEEEEEEEEEEEEEEEEEEEEE 649
+++ +E + +E+EEE++E
Sbjct: 191 PDDDLDEYDYGDEDEEEDDEPPW 213
Score = 34.6 bits (80), Expect = 0.099
Identities = 14/96 (14%), Positives = 25/96 (26%), Gaps = 37/96 (38%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE------------------ 635
L+ + E E E E EEE E+
Sbjct: 113 LMEEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGG 172
Query: 636 -------------------EEEEEEEEEEEEEEEEE 652
+++ +E + +E+EEE+
Sbjct: 173 GAYYYFKFYKPKQQEKGAPDDDLDEYDYGDEDEEED 208
Score = 33.1 bits (76), Expect = 0.30
Identities = 11/62 (17%), Positives = 19/62 (30%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYVLYVLSKGKIAGL 679
EEE+ E E E E E +++ + +L + G
Sbjct: 115 EEEDAAAPTCSCCPVCSVNMTECTGPEPEPEPEPEEEPEKKSGMGPLLLVLAVALIGGGA 174
Query: 680 FY 681
+Y
Sbjct: 175 YY 176
Score = 31.2 bits (71), Expect = 1.5
Identities = 7/34 (20%), Positives = 21/34 (61%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
+ +++E+ +++ +E + +E+EEE++E
Sbjct: 180 FYKPKQQEKGAPDDDLDEYDYGDEDEEEDDEPPW 213
Score = 29.2 bits (66), Expect = 5.5
Identities = 9/28 (32%), Positives = 10/28 (35%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E E E E + E E EEE
Sbjct: 26 EPEPEVPQTEATDPSEVVVETVTEEEGG 53
Score = 28.8 bits (65), Expect = 6.7
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEE 624
GE E E + E + E E EEE
Sbjct: 25 GEPEPEVPQTEATDPSEVVVETVTEEE 51
Score = 28.8 bits (65), Expect = 7.5
Identities = 10/28 (35%), Positives = 12/28 (42%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E E EV + E + E E EEE
Sbjct: 26 EPEPEVPQTEATDPSEVVVETVTEEEGG 53
Score = 28.5 bits (64), Expect = 9.5
Identities = 9/28 (32%), Positives = 11/28 (39%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E E E + E + E E EEE
Sbjct: 26 EPEPEVPQTEATDPSEVVVETVTEEEGG 53
>gnl|CDD|221668 pfam12619, MCM2_N, Mini-chromosome maintenance protein 2. This
domain family is found in eukaryotes, and is typically
between 138 and 153 amino acids in length. The family is
found in association with pfam00493. Mini-chromosome
maintenance (MCM) proteins are essential for DNA
replication. These proteins use ATPase activity to
perform this function.
Length = 145
Score = 43.5 bits (103), Expect = 6e-05
Identities = 13/29 (44%), Positives = 24/29 (82%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E+E +EEEE++++ ++ +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 42.7 bits (101), Expect = 1e-04
Identities = 20/67 (29%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE--EEEEEVRGG 656
E +EEEE E++ ++ +EE EEEE+ E++ + E + E + +E+ ++E +
Sbjct: 3 EPDEEEELEDDIDDLDEEAEEEEDGEDLFGDNMERDYRANPELDRYDEDGLDDESDY--- 59
Query: 657 GKEEISL 663
EE+S
Sbjct: 60 --EELSA 64
Score = 41.5 bits (98), Expect = 2e-04
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
E+E +EEEE E++ +++ EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 41.5 bits (98), Expect = 2e-04
Identities = 14/29 (48%), Positives = 23/29 (79%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E+E +EEEE E+++ + +EE EEEE+ E+
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGED 29
Score = 40.4 bits (95), Expect = 7e-04
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEV---QEEEEEEEEEEEEEEEEEEE----EEEEE 651
E E +EEEE E++ ++ +EE EEEE+ + E + E + +E+ E + E
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGEDLFGDNMERDYRANPELDRYDEDGLDDESDYE 60
Query: 652 E 652
E
Sbjct: 61 E 61
Score = 38.1 bits (89), Expect = 0.004
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEE------EEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E EE E++ ++ +EE EEEE+ E+ E + + E + +E+ ++E + EE
Sbjct: 5 DEEEELEDDIDDLDEEAEEEEDGEDLFGDNMERDYRANPELDRYDEDGLDDESDYEELSA 64
Query: 652 EVR 654
R
Sbjct: 65 AAR 67
Score = 32.3 bits (74), Expect = 0.36
Identities = 13/79 (16%), Positives = 34/79 (43%), Gaps = 8/79 (10%)
Query: 578 SDQDEIGSP----RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
SD +E+ S E + R +R +++++++ + + Q
Sbjct: 57 SDYEEL-SAAARRAAE---ARLNRRDRLLRRRRMPAAFLDDDDDDDGDFDLTAQPRRRRR 112
Query: 634 EEEEEEEEEEEEEEEEEEE 652
+ +E+ + ++E+ + EEE
Sbjct: 113 QYDEDRDADDEDIDPLEEE 131
Score = 31.1 bits (71), Expect = 0.74
Identities = 14/78 (17%), Positives = 28/78 (35%), Gaps = 14/78 (17%)
Query: 598 GEREEEEEEEEEEEEEEE-------------EEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+ ++ +EE EEEE+ E+ E + +E+ + +E + EE E
Sbjct: 12 DDIDDLDEEAEEEEDGEDLFGDNMERDYRANPELDRYDEDGLDDESDYEELSAAARRAAE 71
Query: 645 EE-EEEEEEVRGGGKEEI 661
+ +R
Sbjct: 72 ARLNRRDRLLRRRRMPAA 89
Score = 31.1 bits (71), Expect = 0.96
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 8/36 (22%)
Query: 633 EEEEEEEEE--------EEEEEEEEEEEVRGGGKEE 660
E+E +EEEE +EE EEEE+ E G E
Sbjct: 1 EDEPDEEEELEDDIDDLDEEAEEEEDGEDLFGDNME 36
Score = 30.8 bits (70), Expect = 0.96
Identities = 11/47 (23%), Positives = 22/47 (46%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
D D+ + Q RR + +E+ + ++E+ + EEE E+
Sbjct: 92 DDDDDDDGDFDLTAQPRRRRRQYDEDRDADDEDIDPLEEELSLEDLS 138
Score = 30.4 bits (69), Expect = 1.4
Identities = 9/65 (13%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEE-----EEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+L+RR +++++++ + + + + +E ++ ++E+ + EEE E+
Sbjct: 79 RLLRRRRMPAAFLDDDDDDDGDFDLTAQPRRRRRQYDEDRDADDEDIDPLEEELSLEDLS 138
Query: 648 EEEEE 652
+ +
Sbjct: 139 DVKAA 143
Score = 30.4 bits (69), Expect = 1.5
Identities = 15/68 (22%), Positives = 28/68 (41%), Gaps = 2/68 (2%)
Query: 589 ENIIQLIRRGEREEEEEEEEEE--EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E + I + E EEEE+ E+ + E + E + +E+ ++E + EE
Sbjct: 8 EELEDDIDDLDEEAEEEEDGEDLFGDNMERDYRANPELDRYDEDGLDDESDYEELSAAAR 67
Query: 647 EEEEEEVR 654
E +
Sbjct: 68 RAAEARLN 75
>gnl|CDD|224236 COG1317, FliH, Flagellar biosynthesis/type III secretory pathway
protein [Cell motility and secretion / Intracellular
trafficking and secretion].
Length = 234
Score = 44.7 bits (106), Expect = 6e-05
Identities = 28/97 (28%), Positives = 42/97 (43%), Gaps = 7/97 (7%)
Query: 558 NVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEE 617
N+ N ++ + +V + D G L EEE E+ E +EEE E
Sbjct: 3 NIINEDRDDALPF--QVIEFKDLANAGPKVAPEKAVL-----EEEELEQALEAKEEELES 55
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+E +E ++E E EE + EE EE +EE R
Sbjct: 56 AAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQEEGR 92
Score = 38.1 bits (89), Expect = 0.009
Identities = 23/65 (35%), Positives = 31/65 (47%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E+ EEEE E+ E +EEE E +E +E EE E EE + EE G+E
Sbjct: 30 VAPEKAVLEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQLGYEEGFEEGQE 89
Query: 660 EISLH 664
E +
Sbjct: 90 EGRVL 94
Score = 37.8 bits (88), Expect = 0.012
Identities = 21/58 (36%), Positives = 27/58 (46%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ E+ EEEE E+ E +EEE E +E +E EE E EE G EE
Sbjct: 25 NAGPKVAPEKAVLEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQLGYEE 82
Score = 35.1 bits (81), Expect = 0.073
Identities = 19/58 (32%), Positives = 27/58 (46%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+ E+ EEEE E+ E +EE E +E +E EE E EE + G +E
Sbjct: 25 NAGPKVAPEKAVLEEEELEQALEAKEEELESAAQELQEGIEEGAREGYEEGFQLGYEE 82
>gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional.
Length = 880
Score = 45.8 bits (109), Expect = 6e-05
Identities = 28/75 (37%), Positives = 34/75 (45%), Gaps = 3/75 (4%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R E++ +LI E EE+ E EE E E E E +E+ E E EEE EE EE
Sbjct: 517 RREDLEELI---AERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREE 573
Query: 647 EEEEEEVRGGGKEEI 661
E KE I
Sbjct: 574 VAELNSKLAELKERI 588
Score = 43.9 bits (104), Expect = 3e-04
Identities = 29/72 (40%), Positives = 37/72 (51%), Gaps = 4/72 (5%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R E++++ R ER EE E+ EE E E EE+ E +E E E E E EE+ E
Sbjct: 500 RAEDLVEAEDRIERLEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREA 559
Query: 647 ----EEEEEEVR 654
EEE EE R
Sbjct: 560 AAEAEEEAEEAR 571
Score = 43.5 bits (103), Expect = 4e-04
Identities = 24/54 (44%), Positives = 30/54 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E+ ++ EE EE EE E E E++E E E+ EE EE EEE EE E
Sbjct: 345 ESLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRE 398
Score = 42.7 bits (101), Expect = 6e-04
Identities = 26/60 (43%), Positives = 28/60 (46%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
L R E EE E E EE+ E EE E E E E EE+ E E EEE EE E
Sbjct: 514 LEERREDLEELIAERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREE 573
Score = 42.7 bits (101), Expect = 7e-04
Identities = 30/82 (36%), Positives = 37/82 (45%), Gaps = 11/82 (13%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE--------- 639
E+ L R E EE E E E EE E E+ EE++E EEE EE E
Sbjct: 349 EDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDLG 408
Query: 640 --EEEEEEEEEEEEEVRGGGKE 659
E+ EE EE +E+R E
Sbjct: 409 NAEDFLEELREERDELREREAE 430
Score = 40.4 bits (95), Expect = 0.004
Identities = 25/68 (36%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE- 646
IE++ + I ERE EE EE + E EE EEE +++ E ++ + E E EE
Sbjct: 260 IEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEAVEARREEL 319
Query: 647 EEEEEEVR 654
E+ +EE+R
Sbjct: 320 EDRDEELR 327
Score = 40.4 bits (95), Expect = 0.004
Identities = 31/81 (38%), Positives = 39/81 (48%), Gaps = 10/81 (12%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEE--------EEEEEVQEEEE 631
Q GSP +E I + R EE E E E+ EEE EE EE E E+ ++ EE
Sbjct: 459 QPVEGSPHVETIEE--DRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLEE 516
Query: 632 EEEEEEEEEEEEEEEEEEEEE 652
E+ EE E E EE+ E
Sbjct: 517 RREDLEELIAERRETIEEKRE 537
Score = 40.0 bits (94), Expect = 0.004
Identities = 24/54 (44%), Positives = 28/54 (51%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
RE+ ++ EE EE EE E E E E E E+ EE EE EEE EE E
Sbjct: 346 SLREDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRER 399
Score = 40.0 bits (94), Expect = 0.004
Identities = 29/70 (41%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
Query: 596 RRGEREE--EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
R E +E EE EE EE E E E E+ E + E E E EE EE + E EE EE
Sbjct: 235 TRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEE 294
Query: 654 RGGGKEEISL 663
R E L
Sbjct: 295 RDDLLAEAGL 304
Score = 39.6 bits (93), Expect = 0.005
Identities = 25/64 (39%), Positives = 33/64 (51%), Gaps = 4/64 (6%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
ER EE+ E+ E +E +E EE EE +E E E E E+ E E E E EE+
Sbjct: 223 ERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREEL----A 278
Query: 659 EEIS 662
EE+
Sbjct: 279 EEVR 282
Score = 39.3 bits (92), Expect = 0.007
Identities = 30/87 (34%), Positives = 43/87 (49%), Gaps = 11/87 (12%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
K E+ R E +L + ER+ E E E +E EE E++E EE E+ EE+ +
Sbjct: 614 KREALAELNDERRE---RLAEKRERKRELEAEFDEARIEEAREDKERAEEYLEQVEEKLD 670
Query: 636 EEEEEEEE--------EEEEEEEEEVR 654
E EE ++ E E EE EE+R
Sbjct: 671 ELREERDDLQAEIGAVENELEELEELR 697
Score = 38.5 bits (90), Expect = 0.011
Identities = 24/75 (32%), Positives = 33/75 (44%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
IE + + +E +E EE EE EE E E E+++ E E E E EE EE
Sbjct: 222 IERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRETIAETEREREELAEEV 281
Query: 648 EEEEEVRGGGKEEIS 662
+ E +EE
Sbjct: 282 RDLRERLEELEEERD 296
Score = 38.5 bits (90), Expect = 0.012
Identities = 30/79 (37%), Positives = 40/79 (50%), Gaps = 1/79 (1%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
D+DE R+E + E E E+ ++ EE EE EE E++ E EE E
Sbjct: 320 EDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELREEAAELESELEEAREAV 379
Query: 638 EEEEEEEEE-EEEEEEVRG 655
E+ EE EE EEE EE+R
Sbjct: 380 EDRREEIEELEEEIEELRE 398
Score = 38.1 bits (89), Expect = 0.015
Identities = 24/68 (35%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
Query: 599 EREEEEEEEEEEEEEEEE--EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
ER EE E E E E+ E E E E EE+ EE + E EE EEE ++ E +
Sbjct: 248 ERREELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDA 307
Query: 657 GKEEISLH 664
E +
Sbjct: 308 DAEAVEAR 315
Score = 38.1 bits (89), Expect = 0.017
Identities = 24/85 (28%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+ E + E +EE + EE + EE E ++E+ ++ EE EE
Sbjct: 303 GLDDADAEAVEARREELEDRDEELRDRLEECRVAAQAHNEEAESLREDADDLEERAEELR 362
Query: 642 EE----EEEEEEEEEVRGGGKEEIS 662
EE E E EE E +EEI
Sbjct: 363 EEAAELESELEEAREAVEDRREEIE 387
Score = 38.1 bits (89), Expect = 0.018
Identities = 26/65 (40%), Positives = 32/65 (49%), Gaps = 1/65 (1%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE-EEEEVRG 655
R + ++ EE EE EE E E E EE E+ EE EE EEE EE E + V
Sbjct: 348 REDADDLEERAEELREEAAELESELEEAREAVEDRREEIEELEEEIEELRERFGDAPVDL 407
Query: 656 GGKEE 660
G E+
Sbjct: 408 GNAED 412
Score = 36.9 bits (86), Expect = 0.039
Identities = 23/54 (42%), Positives = 28/54 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E E +EE E EE+ E+ E +E E EE EE EE E E E E+ E
Sbjct: 212 ESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLRE 265
Score = 36.2 bits (84), Expect = 0.060
Identities = 24/68 (35%), Positives = 27/68 (39%), Gaps = 10/68 (14%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEE----------EEEEEVQEEEEEEEEEEEEEEEEEE 645
R E E E EE E E E V+ EE+ E EE E E E+
Sbjct: 427 REAELEATLRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELED 486
Query: 646 EEEEEEEV 653
EEE EEV
Sbjct: 487 LEEEVEEV 494
Score = 36.2 bits (84), Expect = 0.062
Identities = 23/53 (43%), Positives = 29/53 (54%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E E +EE E EE+ E+ E E +E EE EE EE E E E E++R
Sbjct: 212 ESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIEDLR 264
Score = 35.4 bits (82), Expect = 0.10
Identities = 26/87 (29%), Positives = 37/87 (42%), Gaps = 10/87 (11%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+++ E + E +L R E E EE+ E E EEE EE EEV E + E +
Sbjct: 526 AERRETIEEKRERAEELRERAAELEAEAEEKREAAAEAEEEAEEAREEVAELNSKLAELK 585
Query: 638 EEEE----------EEEEEEEEEEEVR 654
E E + E+E E +R
Sbjct: 586 ERIESLERIRTLLAAIADAEDEIERLR 612
Score = 35.0 bits (81), Expect = 0.14
Identities = 22/56 (39%), Positives = 29/56 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
ER E E E +EE E EE+ E+ + +E +E EE EE EE E E E+
Sbjct: 206 ERLNGLESELAELDEEIERYEEQREQARETRDEADEVLEEHEERREELETLEAEIE 261
Score = 34.6 bits (80), Expect = 0.20
Identities = 23/83 (27%), Positives = 33/83 (39%), Gaps = 15/83 (18%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE-------------- 632
+E + I E E E EE EE + E EE++EE ++
Sbjct: 252 ELETLEAEIEDLRETIAETEREREELAEEVRDLRERLEELEEERDDLLAEAGLDDADAEA 311
Query: 633 -EEEEEEEEEEEEEEEEEEEEVR 654
E EE E+ +EE + EE R
Sbjct: 312 VEARREELEDRDEELRDRLEECR 334
Score = 34.2 bits (79), Expect = 0.24
Identities = 25/66 (37%), Positives = 29/66 (43%), Gaps = 12/66 (18%)
Query: 596 RRGEREEEEEEEEEEEE------------EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
RR E EE EEE EE E E+ EE EE +E++E E E E E
Sbjct: 382 RREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTARER 441
Query: 644 EEEEEE 649
EE E
Sbjct: 442 VEEAEA 447
Score = 34.2 bits (79), Expect = 0.27
Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 14/78 (17%)
Query: 595 IRRGEREEEEEEEEEEEEEEE----------EEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+ +R ++ + + EE+EE E E E +EE++ EE+ E+ E +E +
Sbjct: 181 VLSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEAD 240
Query: 645 EEEEEEEEVRGGGKEEIS 662
E EE EE R EE+
Sbjct: 241 EVLEEHEERR----EELE 254
Score = 33.9 bits (78), Expect = 0.30
Identities = 25/75 (33%), Positives = 32/75 (42%), Gaps = 11/75 (14%)
Query: 595 IRRGEREEEEEEEEEEEEEE-------EEEEEEEEEEEVQEEEEEEEEEEEEEE----EE 643
+ E EE EEE EE E + E+ EE++EE +E E E E E
Sbjct: 379 VEDRREEIEELEEEIEELRERFGDAPVDLGNAEDFLEELREERDELREREAELEATLRTA 438
Query: 644 EEEEEEEEEVRGGGK 658
E EE E + GK
Sbjct: 439 RERVEEAEALLEAGK 453
Score = 33.5 bits (77), Expect = 0.42
Identities = 24/91 (26%), Positives = 38/91 (41%), Gaps = 16/91 (17%)
Query: 587 RIENIIQLI-RRGEREEEEEEEEEEEEEE-----------EEEEEEEEEEEVQEEEEEEE 634
I + I R E+ E E +E E E E +E EE +E++E E
Sbjct: 600 AIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAREDKERAE 659
Query: 635 EE----EEEEEEEEEEEEEEEEVRGGGKEEI 661
E EE+ +E EE ++ + G + E+
Sbjct: 660 EYLEQVEEKLDELREERDDLQAEIGAVENEL 690
Score = 33.1 bits (76), Expect = 0.55
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
++ ++ + + EE+EE++ E + E E E +EE E EE+ E+ E R E
Sbjct: 182 LSDQRGSLDQLKAQIEEKEEKDLHERLNGLESELAELDEEIERYEEQREQARETRDEADE 241
Query: 660 EISLH 664
+ H
Sbjct: 242 VLEEH 246
Score = 33.1 bits (76), Expect = 0.58
Identities = 24/67 (35%), Positives = 33/67 (49%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+E L+ G+ E + E E EE+ E EE++ E E+ EEE EE EE E
Sbjct: 441 RVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLER 500
Query: 647 EEEEEEV 653
E+ E
Sbjct: 501 AEDLVEA 507
Score = 32.7 bits (75), Expect = 0.73
Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Query: 598 GEREEEEEEEEEEEEEEEEEEE-EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
G+ E E EE+ E EE E E E+++EE EE EE E E+ E E+ E +
Sbjct: 458 GQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEVEERLERAEDLVEAEDRIERLE 515
Score = 30.8 bits (70), Expect = 3.1
Identities = 21/65 (32%), Positives = 30/65 (46%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
RI ++ I E E E E+ E E +E E E +E + E E E +E EE
Sbjct: 593 RIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIEEAR 652
Query: 647 EEEEE 651
E++E
Sbjct: 653 EDKER 657
Score = 30.4 bits (69), Expect = 4.4
Identities = 21/68 (30%), Positives = 32/68 (47%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E I L+ E+E E E+ E E +E E + E+ E + E E E +E E
Sbjct: 590 SLERIRTLLAAIADAEDEIERLREKREALAELNDERRERLAEKRERKRELEAEFDEARIE 649
Query: 647 EEEEEEVR 654
E E++ R
Sbjct: 650 EAREDKER 657
Score = 30.0 bits (68), Expect = 5.2
Identities = 21/65 (32%), Positives = 28/65 (43%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ + + E E + E + E E EE +E EE E E E+ EEE EE
Sbjct: 435 LRTARERVEEAEALLEAGKCPECGQPVEGSPHVETIEEDRERVEELEAELEDLEEEVEEV 494
Query: 648 EEEEE 652
EE E
Sbjct: 495 EERLE 499
Score = 29.6 bits (67), Expect = 7.2
Identities = 22/54 (40%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 600 REEEEEEEEEEEEEEEE-EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
RE++E EE E+ EE+ +E EE +++Q E E E EE EE E E E
Sbjct: 652 REDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALEN 705
Score = 29.6 bits (67), Expect = 7.4
Identities = 20/54 (37%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
Query: 597 RGEREEEEE--EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
R ++E EE E+ EE+ +E EE ++ + E+ E E EE EE E E E
Sbjct: 652 REDKERAEEYLEQVEEKLDELREERDDLQAEIGAVENELEELEELRERREALEN 705
>gnl|CDD|225606 COG3064, TolA, Membrane protein involved in colicin uptake [Cell
envelope biogenesis, outer membrane].
Length = 387
Score = 45.3 bits (107), Expect = 7e-05
Identities = 19/71 (26%), Positives = 47/71 (66%), Gaps = 5/71 (7%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE-----EEEVQEEEEEEEEEEEEEE 641
RI++ ++GE++ +++EE+ EE + ++ E+E E+E + +E++++ EE E+
Sbjct: 66 RIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEK 125
Query: 642 EEEEEEEEEEE 652
+ + E++++EE
Sbjct: 126 QAQLEQKQQEE 136
Score = 44.2 bits (104), Expect = 2e-04
Identities = 15/56 (26%), Positives = 38/56 (67%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ E+ EE + ++ E+E ++ E+E + QE++++ EE E++ + E++++EE+
Sbjct: 83 KKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQA 138
Score = 43.0 bits (101), Expect = 4e-04
Identities = 16/59 (27%), Positives = 41/59 (69%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R+ + E+ EE + ++ E+E ++ E+E ++ +E++++ EE E++ + E++++EE+ R
Sbjct: 81 RKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQAR 139
Score = 43.0 bits (101), Expect = 4e-04
Identities = 14/64 (21%), Positives = 37/64 (57%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ E+E ++ E+E + +E++++ EE E+ + E++++EE+ + E++++ E
Sbjct: 96 QAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAK 155
Query: 656 GGKE 659
E
Sbjct: 156 AAAE 159
Score = 42.2 bits (99), Expect = 6e-04
Identities = 16/76 (21%), Positives = 44/76 (57%), Gaps = 2/76 (2%)
Query: 587 RIENIIQLIRRGEREEEE--EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+ E + + ++ + E+E ++ E+E + +E++++ EE E Q + E++++EE+ +
Sbjct: 84 KEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQARKAAA 143
Query: 645 EEEEEEEEVRGGGKEE 660
E++++ E + E
Sbjct: 144 EQKKKAEAAKAKAAAE 159
Score = 42.2 bits (99), Expect = 7e-04
Identities = 15/99 (15%), Positives = 44/99 (44%), Gaps = 9/99 (9%)
Query: 562 TNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE 621
+ K + K E + +++ E+E + +E++++ EE E++ +
Sbjct: 79 QQRKKKEEQVAEELKPKQAAEQ---------ERLKQLEKERLKAQEQQKQAEEAEKQAQL 129
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E+++ +E+ + E++++ E + + E + E
Sbjct: 130 EQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAE 168
Score = 41.5 bits (97), Expect = 0.001
Identities = 15/61 (24%), Positives = 40/61 (65%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+ E++ +++EE+ EE + ++ E+E ++ E+E + +E++++ EE E++ ++ +E
Sbjct: 76 KGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQE 135
Query: 660 E 660
E
Sbjct: 136 E 136
Score = 40.7 bits (95), Expect = 0.002
Identities = 14/60 (23%), Positives = 40/60 (66%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E++ +++EE+ EE + ++ E+E +++ E+E + +E++++ EE E++ + + +E+
Sbjct: 78 EQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEKQAQLEQKQQEEQ 137
Score = 39.9 bits (93), Expect = 0.004
Identities = 14/78 (17%), Positives = 40/78 (51%)
Query: 575 WKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+ + + + E + EE + ++ E+E ++ E+E + + Q+++ EE
Sbjct: 64 YGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEA 123
Query: 635 EEEEEEEEEEEEEEEEEE 652
E++ + E++++EE+ +
Sbjct: 124 EKQAQLEQKQQEEQARKA 141
Score = 39.5 bits (92), Expect = 0.004
Identities = 12/58 (20%), Positives = 37/58 (63%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ ++ ++ E++ +++EE+ EE + ++ E+E ++ E+E + +E++++ EE +
Sbjct: 68 QSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEAEK 125
Score = 39.5 bits (92), Expect = 0.005
Identities = 16/65 (24%), Positives = 39/65 (60%), Gaps = 3/65 (4%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE---EEEEEEEEEEEEEEE 647
++Q R + ++ ++ E++ +++EE+ EE + Q E+E + E+E + +E++++
Sbjct: 60 VVQQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQ 119
Query: 648 EEEEE 652
EE E
Sbjct: 120 AEEAE 124
Score = 34.5 bits (79), Expect = 0.16
Identities = 12/56 (21%), Positives = 33/56 (58%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+ ++ ++ E++ +++EE+V EE + ++ E+E ++ E+E + + + EE
Sbjct: 68 QSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEEA 123
Score = 34.2 bits (78), Expect = 0.22
Identities = 10/55 (18%), Positives = 33/55 (60%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+ ++ ++ E++ +++EE+ +E + ++ E+E ++ E+E + +E + +E
Sbjct: 68 QSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKERLKAQEQQKQAEE 122
Score = 33.8 bits (77), Expect = 0.31
Identities = 11/62 (17%), Positives = 27/62 (43%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E++++ E + + E + + E + + EE + EE + + E +++ E
Sbjct: 144 EQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAA 203
Query: 659 EE 660
E
Sbjct: 204 AE 205
Score = 33.4 bits (76), Expect = 0.35
Identities = 11/65 (16%), Positives = 27/65 (41%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++ E + + E + + E +++ EE + EE + + E +++ E E +
Sbjct: 147 KKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEK 206
Query: 656 GGKEE 660
E
Sbjct: 207 AKAEA 211
Score = 33.4 bits (76), Expect = 0.42
Identities = 10/57 (17%), Positives = 30/57 (52%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ + E++++EE+ + E++++ E + E + + E +++ EE + E
Sbjct: 125 KQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAE 181
Score = 33.0 bits (75), Expect = 0.46
Identities = 13/57 (22%), Positives = 27/57 (47%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ E + EE + + E +++ E E E+ + E E + + E++ E EE
Sbjct: 171 KKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEE 227
Score = 32.6 bits (74), Expect = 0.68
Identities = 11/57 (19%), Positives = 28/57 (49%), Gaps = 4/57 (7%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE----EEEEEEEEEEEEEEEEE 651
+ + E++++EE+ + E++++ E + E E +++ EE + EE
Sbjct: 126 QAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEE 182
Score = 32.2 bits (73), Expect = 0.80
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 600 REEEEEEEEEEE-----EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ EE + EE E +++ E E + E+ + E E + + E++ E EE+
Sbjct: 171 KKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEK 228
Score = 32.2 bits (73), Expect = 0.82
Identities = 12/62 (19%), Positives = 27/62 (43%), Gaps = 3/62 (4%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ---EEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E + + E +++ EE + EE + E +++ E E + E+ + E E
Sbjct: 153 KAKAAAEAAKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAE 212
Query: 653 VR 654
+
Sbjct: 213 AK 214
Score = 31.8 bits (72), Expect = 1.0
Identities = 13/66 (19%), Positives = 30/66 (45%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + E + + E +++ E E + E+ + E E + + E++ E EE+ E+
Sbjct: 174 EEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAEK 233
Query: 653 VRGGGK 658
+ K
Sbjct: 234 KKAAAK 239
Score = 31.8 bits (72), Expect = 1.2
Identities = 11/50 (22%), Positives = 24/50 (48%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E +++ EE + EE + + E +++ E E + E+ + E E +
Sbjct: 166 AAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKA 215
Score = 31.8 bits (72), Expect = 1.3
Identities = 11/66 (16%), Positives = 31/66 (46%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ + E++++EE+ + E++++ E + + E + + E +++ EE +
Sbjct: 123 AEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAAKAAEE 182
Query: 655 GGGKEE 660
K E
Sbjct: 183 AKAKAE 188
Score = 31.8 bits (72), Expect = 1.3
Identities = 12/59 (20%), Positives = 26/59 (44%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE + EE + + E +++ E + + E+ + E E + + E++ E E
Sbjct: 174 EEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKKAEAAAEEKAAAE 232
Score = 31.1 bits (70), Expect = 2.2
Identities = 12/65 (18%), Positives = 33/65 (50%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++ E E++ + E++++EE+ + E+++ E + + E + + E +++ E
Sbjct: 118 KQAEEAEKQAQLEQKQQEEQARKAAAEQKKKAEAAKAKAAAEAAKLKAAAEAKKKAEEAA 177
Query: 656 GGKEE 660
EE
Sbjct: 178 KAAEE 182
Score = 30.7 bits (69), Expect = 2.4
Identities = 12/62 (19%), Positives = 28/62 (45%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ + E +++ EE + EE + + +++ E E + E+ + E E + + K
Sbjct: 161 AKLKAAAEAKKKAEEAAKAAEEAKAKAEAAAAKKKAEAEAKAAAEKAKAEAEAKAKAEKK 220
Query: 659 EE 660
E
Sbjct: 221 AE 222
Score = 30.3 bits (68), Expect = 4.0
Identities = 9/49 (18%), Positives = 28/49 (57%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ + ++ ++ E++ ++EE+ EE + ++ E+E ++ E+ R
Sbjct: 62 QQYGRIQSQQSSAKKGEQQRKKKEEQVAEELKPKQAAEQERLKQLEKER 110
>gnl|CDD|235026 PRK02292, PRK02292, V-type ATP synthase subunit E; Provisional.
Length = 188
Score = 43.8 bits (104), Expect = 7e-05
Identities = 22/60 (36%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEE--EEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+E +++ IR R E E +EE EE E E + EE+ E+ E E E E E+ E+E
Sbjct: 3 LETVVEDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLREQE 62
Score = 39.2 bits (92), Expect = 0.002
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 4/61 (6%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E+ +E E E +EE EE+ E E + EE E+ E E E E E+ +E+
Sbjct: 8 EDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQLRE----QEL 63
Query: 662 S 662
S
Sbjct: 64 S 64
Score = 36.5 bits (85), Expect = 0.021
Identities = 18/51 (35%), Positives = 25/51 (49%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+ +E E E +EE EE + E E + EE E+ E E E E E+
Sbjct: 8 EDIRDEARARASEIRAEADEEAEEIIAEAEADAEEILEDREAEAEREIEQL 58
>gnl|CDD|234366 TIGR03825, FliH_bacil, flagellar assembly protein FliH. This
bacillus clade of FliH proteins is not found by the Pfam
FliH model pfam02108, but is closely related to the
sequences identified by that model. Sequences identified
by this model are observed in flagellar operons in an
analogous position relative to other flagellar operon
genes.
Length = 255
Score = 44.8 bits (106), Expect = 7e-05
Identities = 19/60 (31%), Positives = 33/60 (55%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
Q+ E E+E +EE+E E+ E+ E E + +++ E + E+ E+E + EEE E
Sbjct: 24 QVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEERE 83
Score = 42.5 bits (100), Expect = 3e-04
Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 587 RIENIIQLIRRGERE-EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
I E E+E +EE+E E+ E+ E E ++ E+ E + E+ E+E
Sbjct: 16 ERGIIPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQER 75
Query: 646 EEEEEEEVR 654
+ EEE R
Sbjct: 76 AQWEEERER 84
Score = 40.6 bits (95), Expect = 0.002
Identities = 25/81 (30%), Positives = 38/81 (46%), Gaps = 5/81 (6%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEV-----QEEEEEEEEEEEE 639
P E I +R+ E E+E +EE+E E+ E+ E E Q E + E+
Sbjct: 12 IPAQERGIIPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQI 71
Query: 640 EEEEEEEEEEEEEVRGGGKEE 660
E+E + EEE E + K+E
Sbjct: 72 EQERAQWEEERERLIQEAKQE 92
Score = 32.5 bits (74), Expect = 0.65
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E E+E +EE+E E+ + E E + E+ E + E+ E+ R +EE
Sbjct: 30 ETEQELADEEQEFEQILEKAEAEAAQIIEQAEAQAAAIREQIEQERAQWEEER 82
Score = 30.2 bits (68), Expect = 3.5
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEE--EEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
Q+I + E + E+ E+E + EEE E +E QE E + E E + +
Sbjct: 55 QIIEQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESEALSIYQSTID 114
Query: 651 E 651
E
Sbjct: 115 E 115
Score = 29.4 bits (66), Expect = 5.1
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+ E + E+ E+E + EEE E + +E ++E E + E E +
Sbjct: 58 EQAEAQAAAIREQIEQERAQWEEERERLIQEAKQEGYEAGFQAGESEALSIYQS 111
Score = 29.0 bits (65), Expect = 7.4
Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE-EEEEEE 648
NII+ + +E + + E E+E +E QE E+ E+ E E + E+ E
Sbjct: 3 NIIKSTKSVIPAQERGIIPLRQVTDVPETEQELADEEQEFEQILEKAEAEAAQIIEQAEA 62
Query: 649 EEEEVR 654
+ +R
Sbjct: 63 QAAAIR 68
>gnl|CDD|218771 pfam05835, Synaphin, Synaphin protein. This family consists of
several eukaryotic synaphin 1 and 2 proteins.
Synaphin/complexin is a cytosolic protein that
preferentially binds to syntaxin within the SNARE
complex. Synaphin promotes SNAREs to form precomplexes
that oligomerise into higher order structures. A peptide
from the central, syntaxin binding domain of synaphin
competitively inhibits these two proteins from
interacting and prevents SNARE complexes from
oligomerising. It is thought that oligomerisation of
SNARE complexes into a higher order structure creates a
SNARE scaffold for efficient, regulated fusion of
synaptic vesicles. Synaphin promotes neuronal exocytosis
by promoting interaction between the complementary
syntaxin and synaptobrevin transmembrane regions that
reside in opposing membranes prior to fusion.
Length = 139
Score = 42.6 bits (100), Expect = 8e-05
Identities = 30/80 (37%), Positives = 43/80 (53%), Gaps = 17/80 (21%)
Query: 598 GEREEEEEEEEEEEEEEEEEE---EEEEEEEVQEEEEEEEEEE--------------EEE 640
G +E+E +E + EEE+EE +E E EEE + + + EEE E EE+
Sbjct: 21 GGKEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGIKKKEED 80
Query: 641 EEEEEEEEEEEEVRGGGKEE 660
EEE + EEEE R G K++
Sbjct: 81 EEEPQAAAEEEEGRLGRKKK 100
Score = 38.7 bits (90), Expect = 0.002
Identities = 33/97 (34%), Positives = 42/97 (43%), Gaps = 23/97 (23%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEE--------------EEEEE 624
+DE E + I+ RE EEE + + + EEE E EE+EE
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGIKKKEEDEE 82
Query: 625 EVQEEEEEEE---------EEEEEEEEEEEEEEEEEE 652
E Q EEEE EE E EE+EEEEE+
Sbjct: 83 EPQAAAEEEEGRLGRKKKTPEELAAEAGEEDEEEEEK 119
Score = 36.4 bits (84), Expect = 0.014
Identities = 32/97 (32%), Positives = 44/97 (45%), Gaps = 21/97 (21%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEE-----------EEEEEEEE 624
K + DE + + IQ R EE + + + EEE E +++EE+EE
Sbjct: 23 KEDEGDESDAEEEDEEIQEALREAEEERKAKHRKMEEEREVMRQGIRDKYGIKKKEEDEE 82
Query: 625 EVQEEEEEEE----------EEEEEEEEEEEEEEEEE 651
E Q EEEE EE E EE+EEEEE+
Sbjct: 83 EPQAAAEEEEGRLGRKKKTPEELAAEAGEEDEEEEEK 119
>gnl|CDD|227496 COG5167, VID27, Protein involved in vacuole import and degradation
[Intracellular trafficking and secretion].
Length = 776
Score = 45.4 bits (107), Expect = 9e-05
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 596 RRGEREEEEEE---EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ G E E ++ + E++ ++ E+++ E EE E EEE E+ E+E +
Sbjct: 340 KWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHS 399
Query: 653 VRGGGKEEISLHF 665
R +E+ HF
Sbjct: 400 KRICDDDELENHF 412
Score = 44.2 bits (104), Expect = 2e-04
Identities = 19/90 (21%), Positives = 40/90 (44%)
Query: 574 VWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
+W+ + ++ G+ E ++ E++ ++ E+ E E EE EEE E+
Sbjct: 332 LWRNLNNEKWGNEEAERKDYILDSSSVPLEKQFDDILYFEKMEIENRNPEESEHEEEVED 391
Query: 634 EEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
E+E + + +++E E E+ S
Sbjct: 392 YEDENDHSKRICDDDELENHFRAADEKNSH 421
Score = 42.3 bits (99), Expect = 0.001
Identities = 20/85 (23%), Positives = 40/85 (47%), Gaps = 5/85 (5%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E++ ++ E+ E E EE + EEE E+ E+E + + +++E E +E
Sbjct: 358 VPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADE 417
Query: 661 ISLHFYVLY-----VLSKGKIAGLF 680
+ H V + +++G G+F
Sbjct: 418 KNSHLVVGFRNERSYVTRGNSIGVF 442
Score = 41.1 bits (96), Expect = 0.002
Identities = 16/65 (24%), Positives = 31/65 (47%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E++ ++ E+ E E EE E +EE E+ E+E + + +++E E R +
Sbjct: 358 VPLEKQFDDILYFEKMEIENRNPEESEHEEEVEDYEDENDHSKRICDDDELENHFRAADE 417
Query: 659 EEISL 663
+ L
Sbjct: 418 KNSHL 422
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A
(vWA) domain [General function prediction only].
Length = 4600
Score = 45.8 bits (108), Expect = 9e-05
Identities = 16/54 (29%), Positives = 33/54 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + ++++ + E++E+ E+ EE VQE EE E+ + +EE E+ E E++
Sbjct: 4044 DEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Score = 44.6 bits (105), Expect = 2e-04
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 7/70 (10%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEE---EEEVQEEEE----EEEEEEEEEEEEEEEEEEE 650
+ +EE + E++E ++E+ EE +E++Q+++ E++E+ E+ EE +E E
Sbjct: 4016 ADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENE 4075
Query: 651 EEVRGGGKEE 660
E G K +
Sbjct: 4076 ESTEDGVKSD 4085
Score = 43.1 bits (101), Expect = 6e-04
Identities = 24/117 (20%), Positives = 55/117 (47%), Gaps = 19/117 (16%)
Query: 547 LMNSEWQSLWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEE 606
L NS + LWD + L+T + S + +++ ++ S +N + E+++
Sbjct: 3899 LSNSLNEKLWDEPNEEDLLETEQKSNEQSAANNESDLVSKEDDN---------KALEDKD 3949
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE----------EEEEEEEEEEV 653
+E+E+EEE ++ ++E+Q + +E + E E +E+E + ++
Sbjct: 3950 RQEKEDEEEMSDDVGIDDEIQPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDS 4006
Score = 43.1 bits (101), Expect = 6e-04
Identities = 17/62 (27%), Positives = 33/62 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E++E ++E+ EE +E+ ++++ E++E+ E+ EE +E EE E
Sbjct: 4026 EKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSD 4085
Query: 659 EE 660
EE
Sbjct: 4086 EE 4087
Score = 42.7 bits (100), Expect = 8e-04
Identities = 15/61 (24%), Positives = 34/61 (55%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E +EE + E++E ++E+ EE + E+ ++++ + E++E+ E+ EE +E
Sbjct: 4018 ENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEES 4077
Query: 661 I 661
Sbjct: 4078 T 4078
Score = 42.3 bits (99), Expect = 0.001
Identities = 14/60 (23%), Positives = 31/60 (51%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+E+ ++++ + E++E+ E+ E +E EE E+ + +EE E+ E E +
Sbjct: 4044 DEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHP 4103
Score = 41.5 bits (97), Expect = 0.002
Identities = 18/59 (30%), Positives = 36/59 (61%), Gaps = 2/59 (3%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EE+ E E++ E+ E + V +E++ + E+++ +E+E+EEE ++V G +EI
Sbjct: 3913 EEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDV--GIDDEI 3969
Score = 41.5 bits (97), Expect = 0.002
Identities = 16/62 (25%), Positives = 36/62 (58%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EE +E+ ++++ + E++E++ E+ EE +E EE E+ + +EE +G E+
Sbjct: 4038 EENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQ 4097
Query: 662 SL 663
++
Sbjct: 4098 AI 4099
Score = 41.1 bits (96), Expect = 0.002
Identities = 15/52 (28%), Positives = 30/52 (57%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E++E+ E+ EE +E EE E+ V+ +EE E+ E E++ + + + +
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAK 4108
Score = 40.4 bits (94), Expect = 0.004
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ---EEEEEEEEEEEEEEEEEE 645
E+I + + EE EE+ + + +E E E E ++ E E + EEE
Sbjct: 3825 EDITNTLNEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEE 3884
Query: 646 EEEEEEEV 653
++ +EEV
Sbjct: 3885 NQDLDEEV 3892
Score = 40.0 bits (93), Expect = 0.005
Identities = 14/61 (22%), Positives = 35/61 (57%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E E++ E+ E + +E++ + E+++ +E+E+EEE ++ ++E++ +E
Sbjct: 3918 ETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDDEIQPDIQENN 3977
Query: 662 S 662
S
Sbjct: 3978 S 3978
Score = 38.4 bits (89), Expect = 0.014
Identities = 15/59 (25%), Positives = 32/59 (54%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+E EE+ E E++ E+ E +E++ + E+++ +E+E+EEE G ++
Sbjct: 3909 DEPNEEDLLETEQKSNEQSAANNESDLVSKEDDNKALEDKDRQEKEDEEEMSDDVGIDD 3967
Score = 38.4 bits (89), Expect = 0.015
Identities = 14/58 (24%), Positives = 34/58 (58%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E +E +EE + E++E ++E+ EE +E+ ++++ + E++E+ G +E +
Sbjct: 4014 EAADENKEEADAEKDEPMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEENV 4071
Score = 38.1 bits (88), Expect = 0.019
Identities = 13/53 (24%), Positives = 27/53 (50%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++E+ E+ EE +E EE E+ +EE E+ E E++ + + + +
Sbjct: 4058 DDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKST 4110
Score = 38.1 bits (88), Expect = 0.020
Identities = 16/64 (25%), Positives = 30/64 (46%), Gaps = 11/64 (17%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE-----------EEEEEEEEEEEEEEEEEE 649
E+++ EE EE+ + + +E E +E E E E + EEE ++ +EE
Sbjct: 3832 NEDDDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEE 3891
Query: 650 EEEV 653
++
Sbjct: 3892 VNDI 3895
Score = 38.1 bits (88), Expect = 0.021
Identities = 13/49 (26%), Positives = 28/49 (57%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E++E+ E+ EE +E EE ++ + +EE E+ E E++ + ++
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKM 4105
Score = 38.1 bits (88), Expect = 0.022
Identities = 14/64 (21%), Positives = 31/64 (48%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+++ +L + + + +E E E E + ++ V E E + EEE ++ +EE +
Sbjct: 3835 DDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVND 3894
Query: 649 EEEE 652
E+
Sbjct: 3895 IPED 3898
Score = 37.3 bits (86), Expect = 0.033
Identities = 22/100 (22%), Positives = 51/100 (51%), Gaps = 19/100 (19%)
Query: 580 QDEIGS------PRIE--NIIQLIRRGEREEEEEEEEEEEE-------EEEEEEEEEEEE 624
Q +I P E ++ + ++ E+E + ++ + E+ E +EE + E++E
Sbjct: 3970 QPDIQENNSQPPPENEDLDLPEDLKLDEKEGDVSKDSDLEDMDMEAADENKEEADAEKDE 4029
Query: 625 EVQEEEEEEEEEEEEEEEEEEEE----EEEEEVRGGGKEE 660
+Q+E+ EE +E+ ++++ E++E++ G EE
Sbjct: 4030 PMQDEDPLEENNTLDEDIQQDDFSDLAEDDEKMNEDGFEE 4069
Score = 36.9 bits (85), Expect = 0.042
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E +E+ E+ EE +E EE E+ + EE E+ E E++ + + + +
Sbjct: 4057 EDDEKMNEDGFEENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKS 4109
Score = 36.9 bits (85), Expect = 0.051
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEE--EEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
EE +E EE E+ + +EE E+ EV E++ + + + + E +EE +G
Sbjct: 4068 EENVQENEESTEDGVKSDEELEQGEVPEDQAIDNHPKMDAKSTFASAEADEENTDKGIVG 4127
Query: 659 E 659
E
Sbjct: 4128 E 4128
Score = 34.6 bits (79), Expect = 0.23
Identities = 18/66 (27%), Positives = 34/66 (51%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
I E+ EEE+E+++E E+E+ ++ + + + +++ E E EEE+ E E
Sbjct: 2923 INVSEQIEEEDEKDDEYGEQEKVSDKNDYLKDFIDYDDDGSISTESEPEEEKRECESGFD 2982
Query: 655 GGGKEE 660
G E
Sbjct: 2983 GWNDYE 2988
Score = 34.6 bits (79), Expect = 0.23
Identities = 21/90 (23%), Positives = 38/90 (42%), Gaps = 17/90 (18%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE-------------E 624
SD DE + +E+ + G ++ E E + EEE ++ +EE E
Sbjct: 3850 SDLDESEARELESDMN----GVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNE 3905
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ +E EE+ E E++ E+ E
Sbjct: 3906 KLWDEPNEEDLLETEQKSNEQSAANNESDL 3935
Score = 32.7 bits (74), Expect = 0.93
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 14/74 (18%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQE--------------EEEEEEEEEEEEEEEEEE 646
++ E E + EEE ++ +EEV + +E EE+ E E++ E+
Sbjct: 3867 VTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKLWDEPNEEDLLETEQKSNEQ 3926
Query: 647 EEEEEEVRGGGKEE 660
E KE+
Sbjct: 3927 SAANNESDLVSKED 3940
Score = 30.7 bits (69), Expect = 3.4
Identities = 14/117 (11%), Positives = 49/117 (41%), Gaps = 12/117 (10%)
Query: 562 TNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEE-------- 613
+ +++ ++ W+ +++ E+ Q E +E+EEE+ +
Sbjct: 4166 DRQYQSLGDHLREWQQANRIHEWEDLTESQSQAFDDSEFMHVKEDEEEDLQALGNAEKDQ 4225
Query: 614 ----EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFY 666
+ +E + + + E+E +E +++ ++ ++ +++ G++ + F
Sbjct: 4226 IKSIDRDESANQNPDSMNSTNIAEDEADEVGDKQLQDGQDISDIKQTGEDTLPTEFG 4282
Score = 30.0 bits (67), Expect = 5.4
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 598 GEREEEEEEEEEEEEEEE-----EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
G E E EEE+ E E + EEEE+++ + E+E E E+ E E+E+ E
Sbjct: 2962 GSISTESEPEEEKRECESGFDGWNDYEEEEDDDEKNEKECELEQNAEILIEDEKIGSEGS 3021
Query: 653 VRGGGKEEIS 662
+ GG+E +
Sbjct: 3022 LESGGEELVC 3031
Score = 29.6 bits (66), Expect = 7.8
Identities = 16/70 (22%), Positives = 28/70 (40%), Gaps = 5/70 (7%)
Query: 599 EREEEEEEEEEEEE-----EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ + +E E E E ++ E E EEE ++ +EE + E+ E++
Sbjct: 3848 NQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVNDIPEDLSNSLNEKL 3907
Query: 654 RGGGKEEISL 663
EE L
Sbjct: 3908 WDEPNEEDLL 3917
Score = 29.2 bits (65), Expect = 9.7
Identities = 20/79 (25%), Positives = 35/79 (44%), Gaps = 20/79 (25%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEE------------EVQEEEEEEEEEEEEEEE 642
E+ EEE+E+++E E+E+ ++ + E E EEE+ E E
Sbjct: 2919 GTGNINVSEQIEEEDEKDDEYGEQEKVSDKNDYLKDFIDYDDDGSISTESEPEEEKRECE 2978
Query: 643 --------EEEEEEEEEEV 653
EEEE+++E+
Sbjct: 2979 SGFDGWNDYEEEEDDDEKN 2997
>gnl|CDD|184539 PRK14150, PRK14150, heat shock protein GrpE; Provisional.
Length = 193
Score = 43.4 bits (103), Expect = 1e-04
Identities = 18/53 (33%), Positives = 32/53 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E++ +E+ EE E E E++EE +E E+++E +E + E E + E + EE
Sbjct: 5 EQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEE 57
Score = 43.0 bits (102), Expect = 2e-04
Identities = 18/54 (33%), Positives = 31/54 (57%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E++ +E+ EE E E E++EE +E + E+E +E + E E + E + E R
Sbjct: 5 EQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEER 58
Score = 42.2 bits (100), Expect = 2e-04
Identities = 19/54 (35%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE--EEEEEEEEEEEEEE 652
EE++ +E+ EE E E E++EE + E E+E +E + E E + E + EE
Sbjct: 4 EEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEE 57
Score = 41.8 bits (99), Expect = 3e-04
Identities = 18/47 (38%), Positives = 26/47 (55%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE++ +E+ EE E E E QEE +E E E+E +E + E E
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEA 48
Score = 41.8 bits (99), Expect = 4e-04
Identities = 17/47 (36%), Positives = 26/47 (55%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE++ +E+ EE E E Q+EE +E E E+E +E + E E
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEA 48
Score = 41.4 bits (98), Expect = 5e-04
Identities = 18/54 (33%), Positives = 30/54 (55%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+E+ EE E E E++EE +E E E+ +E + E E + E + EE + +R
Sbjct: 10 QEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERDSVLR 63
Score = 40.7 bits (96), Expect = 0.001
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE++ +E+ EE E E E++ + +E E E+E +E + E E
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEA 48
Score = 39.5 bits (93), Expect = 0.002
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E+ EE E E E++EE +E E E +E + E E + E + EE +
Sbjct: 9 PQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERD 59
Score = 38.7 bits (91), Expect = 0.003
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE++ +E+ EE E E E+ +E +E E E+E +E + E E
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEA 48
Score = 38.4 bits (90), Expect = 0.005
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE++ +E+ E E E E++EE +E E E+E +E + +
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADARI 43
Score = 38.0 bits (89), Expect = 0.006
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE++ +E+ +E E E E++EE +E E E+E +E + R
Sbjct: 2 SNEEQKTPQEQVSEEIEAEVEQQEEADEAELEDELDEADAR 42
Score = 38.0 bits (89), Expect = 0.007
Identities = 18/53 (33%), Positives = 29/53 (54%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+E+ EE E E E++EE +E E E + +E + E E + E + EE + V
Sbjct: 9 PQEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERDSV 61
Score = 37.2 bits (87), Expect = 0.012
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E+ EE E E E++EE +E E E+E + + E E + E + EE +
Sbjct: 11 EQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERD 59
Score = 36.8 bits (86), Expect = 0.018
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 7/63 (11%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE-------EEE 651
+ + EE E E E++EE +E E E+E + + E E + E + EE + E E
Sbjct: 10 QEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERDSVLRARAEVE 69
Query: 652 EVR 654
+R
Sbjct: 70 NIR 72
Score = 29.5 bits (67), Expect = 3.7
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E + + I ++EE +E E E+E +E + E E Q E + EE +
Sbjct: 10 QEQVSEEIEAEVEQQEEADEAELEDELDEADARIAELEAQLAEAQAEERD 59
Score = 28.3 bits (64), Expect = 9.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EE++ +E+ EE E E E++EE ++E+
Sbjct: 3 NEEQKTPQEQVSEEIEAEVEQQEEADEAELEDEL 36
>gnl|CDD|216108 pfam00769, ERM, Ezrin/radixin/moesin family. This family of
proteins contain a band 4.1 domain (pfam00373), at their
amino terminus. This family represents the rest of these
proteins.
Length = 244
Score = 44.0 bits (104), Expect = 1e-04
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
RR ++E EE EE E EE+ ++EEEE + ++++ +E EEE EEE EEE E
Sbjct: 22 RRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERE 78
Score = 44.0 bits (104), Expect = 1e-04
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+L R E+ EE+ ++E EE EE E EE++++EEEE + E++ +E EEE EE
Sbjct: 9 ELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEE 68
Score = 41.7 bits (98), Expect = 6e-04
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ R + EE EE E EE+ ++EEEE + ++ +E EEE EEE EEE E
Sbjct: 20 DMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERER 79
Query: 653 VR 654
+
Sbjct: 80 LE 81
Score = 41.7 bits (98), Expect = 7e-04
Identities = 25/60 (41%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE-EEEEEEEEEEEEEEEEEVR 654
+ E EE E EE+ ++EEEE + E++ E EEE EEE EEE E E EV
Sbjct: 26 KELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAEVD 85
Score = 41.3 bits (97), Expect = 8e-04
Identities = 23/50 (46%), Positives = 32/50 (64%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE E E++E EE E+ EE+ Q+E EE EE E EE+ ++EEEE +
Sbjct: 1 EEAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQ 50
Score = 40.1 bits (94), Expect = 0.002
Identities = 19/64 (29%), Positives = 30/64 (46%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E +L EEE E E E +E E + EEE +++E E + ++E E +E E
Sbjct: 61 EENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHE 120
Query: 649 EEEE 652
+
Sbjct: 121 RARQ 124
Score = 40.1 bits (94), Expect = 0.002
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE-EEEEEEEEEEEEEEEEEEEEEEEEV 653
EE+ ++EEEE + E++ +E EEE + EEE EEE E E E +E EV
Sbjct: 32 EETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAEVDEATAEV 91
Score = 40.1 bits (94), Expect = 0.002
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE------EEEEEEE 649
+ E EE + E++ +E EEE EEE EEE E E E +E EEE E++
Sbjct: 42 LKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKK 101
Query: 650 EEEVR 654
E E R
Sbjct: 102 EAETR 106
Score = 39.7 bits (93), Expect = 0.002
Identities = 20/52 (38%), Positives = 27/52 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E EEE EEE E E E +E E + EEE E++E E + ++E
Sbjct: 60 EEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQE 111
Score = 39.7 bits (93), Expect = 0.003
Identities = 21/53 (39%), Positives = 33/53 (62%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E E++E EE E+ EE+ ++E++E EE E EE+ ++EEEE + E
Sbjct: 1 EEAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLE 53
Score = 39.7 bits (93), Expect = 0.003
Identities = 25/60 (41%), Positives = 38/60 (63%), Gaps = 4/60 (6%)
Query: 597 RGEREEEEEEEEEEEEEEE----EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
ERE++E EE E+ EE+ ++E EE EE E EE+ ++EEEE + E++ +E EE
Sbjct: 2 EAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEE 61
Score = 39.3 bits (92), Expect = 0.003
Identities = 23/54 (42%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE-EEEVR 654
EEE EEE EEE E E EV E E + EEE E++E E + ++E+R
Sbjct: 60 EEENRRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELR 113
Score = 39.3 bits (92), Expect = 0.004
Identities = 20/55 (36%), Positives = 27/55 (49%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE EEE E E E +E E EEE E++E E + ++E E +E R
Sbjct: 67 EEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHER 121
Score = 38.6 bits (90), Expect = 0.007
Identities = 23/59 (38%), Positives = 37/59 (62%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E EE E+ EE+ ++E EE EE ++ EE+ ++EEEE + E++ +E EEE R
Sbjct: 6 EQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEEENR 64
Score = 38.2 bits (89), Expect = 0.008
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 8/76 (10%)
Query: 587 RIENIIQLIRRGEREEEE--------EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ + +++ E E + EEE EEE EEE E E +E E +
Sbjct: 34 TALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAEVDEATAEVAK 93
Query: 639 EEEEEEEEEEEEEEVR 654
EEE E++E E +++
Sbjct: 94 LEEEREKKEAETRQLQ 109
Score = 38.2 bits (89), Expect = 0.008
Identities = 21/64 (32%), Positives = 32/64 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E Q + + EE+ ++E EE EE E EE ++EEEE + E++ +E EE
Sbjct: 2 EAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQLLEKKADELEE 61
Query: 647 EEEE 650
E
Sbjct: 62 ENRR 65
Score = 38.2 bits (89), Expect = 0.009
Identities = 22/60 (36%), Positives = 31/60 (51%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
L E E EE+ ++EEEE + E++ +E +E EEE EEE E E E +E
Sbjct: 28 LEEYEETALELEEKLKQEEEEAQLLEKKADELEEENRRLEEEAAASEEERERLEAEVDEA 87
Score = 36.3 bits (84), Expect = 0.032
Identities = 22/60 (36%), Positives = 30/60 (50%), Gaps = 4/60 (6%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEV----QEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R EEE EEE E E E +E EV +E E++E E + ++E E +E E R
Sbjct: 64 RRLEEEAAASEEERERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERAR 123
Score = 35.9 bits (83), Expect = 0.044
Identities = 21/50 (42%), Positives = 32/50 (64%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EE E E++E EE E+ EE+++ ++E EE EE E EE+ ++EEE
Sbjct: 1 EEAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEEAQ 50
Score = 33.6 bits (77), Expect = 0.24
Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 15/74 (20%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE---------------EEE 639
+ E + EEE E++E E + ++E E QE E +E
Sbjct: 84 VDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERARQELLEAAAAPTAPPHVAAPV 143
Query: 640 EEEEEEEEEEEEEV 653
E+ E ++ EE
Sbjct: 144 NGEQLEPDDNGEEA 157
Score = 32.8 bits (75), Expect = 0.42
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R E E +E E + EEE E++E E ++Q+E E +E E +E E
Sbjct: 78 ERLEAEVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERARQELLE 128
Score = 32.8 bits (75), Expect = 0.44
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE E E++E EE +++ EE+ ++E EE EE E EE +EE
Sbjct: 1 EEAEREQQELEERMEQMEEDMRRAQKELEEYEETALELEEKLKQEEEE 48
Score = 28.6 bits (64), Expect = 9.0
Identities = 15/80 (18%), Positives = 32/80 (40%), Gaps = 12/80 (15%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE------------EE 634
++ + + E E E++E E + ++E E +E E ++E E
Sbjct: 83 EVDEATAEVAKLEEEREKKEAETRQLQQELREAQEAHERARQELLEAAAAPTAPPHVAAP 142
Query: 635 EEEEEEEEEEEEEEEEEEVR 654
E+ E ++ EE ++
Sbjct: 143 VNGEQLEPDDNGEEASADLE 162
>gnl|CDD|224530 COG1614, CdhC, CO dehydrogenase/acetyl-CoA synthase beta subunit
[Energy production and conversion].
Length = 470
Score = 44.8 bits (106), Expect = 1e-04
Identities = 25/53 (47%), Positives = 29/53 (54%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EE+ +E E +E+ E EEEEEEEEEEEEE E E EE V G
Sbjct: 377 EEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPG 429
Score = 43.7 bits (103), Expect = 3e-04
Identities = 27/70 (38%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE--EEEEEEEEEEEEEEEEEE 646
E + I ++ EE+ +E E +E+ V E EEEEEEEEEEEEE E
Sbjct: 360 ERVKDAIPEDLYDKIATEEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEA 419
Query: 647 EEEEEEVRGG 656
E EE G
Sbjct: 420 EAPMEEPVPG 429
Score = 42.9 bits (101), Expect = 5e-04
Identities = 24/55 (43%), Positives = 29/55 (52%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EE+ +E E +E+ V+ EEEEEEEEEEEEE E E E G E
Sbjct: 377 EEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFE 431
Score = 42.1 bits (99), Expect = 7e-04
Identities = 27/74 (36%), Positives = 31/74 (41%), Gaps = 12/74 (16%)
Query: 555 LWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEE 614
L+D + TI + K E G P +E R EEEEEEEEEEEE
Sbjct: 370 LYDKIATEEDATTIDELREFLK-----EKGHPVVE-------RWAEEEEEEEEEEEEEAA 417
Query: 615 EEEEEEEEEEEVQE 628
E E EE E
Sbjct: 418 EAEAPMEEPVPGFE 431
Score = 41.7 bits (98), Expect = 0.001
Identities = 19/46 (41%), Positives = 24/46 (52%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
I+ + + ++ E EEEEEEEEEEEEE E E EE
Sbjct: 383 IDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 40.6 bits (95), Expect = 0.003
Identities = 22/57 (38%), Positives = 28/57 (49%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
D+I + I +R +E+ E EEEEEEEEEEEEE + E EE
Sbjct: 372 DKIATEEDATTIDELREFLKEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVP 428
Score = 37.1 bits (86), Expect = 0.032
Identities = 22/61 (36%), Positives = 26/61 (42%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
+E+ E EEEEEEEE +EEE E E EE E E GG I +
Sbjct: 391 KEKGHPVVERWAEEEEEEEEEEEEEAAEAEAPMEEPVPGFEVPEMPMPAAGGGGGIKIVL 450
Query: 666 Y 666
Sbjct: 451 K 451
>gnl|CDD|235562 PRK05687, fliH, flagellar assembly protein H; Validated.
Length = 246
Score = 43.8 bits (104), Expect = 1e-04
Identities = 19/63 (30%), Positives = 22/63 (34%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E E E EE EEE EEE E ++ EE + E R G
Sbjct: 25 DPPPEPPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAEG 84
Query: 658 KEE 660
E
Sbjct: 85 YEA 87
Score = 36.8 bits (86), Expect = 0.021
Identities = 17/62 (27%), Positives = 22/62 (35%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E E EE EEE +EE E ++ EE + E E G
Sbjct: 30 PPPPEPAAPPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEEGFAAGKAEGRAEGYEAGY 89
Query: 659 EE 660
+E
Sbjct: 90 QE 91
Score = 36.4 bits (85), Expect = 0.026
Identities = 24/97 (24%), Positives = 32/97 (32%), Gaps = 13/97 (13%)
Query: 573 KVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
+ W+ D D P E E EE EEE EEE E Q+ EE
Sbjct: 17 QRWQLPDFDPPPEPPPPEPA-----APPPEPPEPEEVPEEEAAPLTEEELEAIRQQAHEE 71
Query: 633 ------EEEEEEEEEEEEEE--EEEEEEVRGGGKEEI 661
E E E +E + E+ G+ +
Sbjct: 72 GFAAGKAEGRAEGYEAGYQEGLAQGLEQGLAEGQAQA 108
>gnl|CDD|234352 TIGR03779, Bac_Flav_CT_M, Bacteroides conjugative transposon TraM
protein. Members of this protein family are designated
TraM and are found in a proposed transfer region of a
class of conjugative transposon found in the Bacteroides
lineage [Cellular processes, DNA transformation].
Length = 410
Score = 44.7 bits (106), Expect = 1e-04
Identities = 23/85 (27%), Positives = 33/85 (38%), Gaps = 3/85 (3%)
Query: 578 SDQDEIGSPR-IENIIQLIRRGERE--EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+ GS R I + R RE E + +EE+E E EE E + E
Sbjct: 108 EPAETAGSLRPIRSSAAAYRDINRELGSFYEYPKTDEEKELLREVEELESRLATEPSPAP 167
Query: 635 EEEEEEEEEEEEEEEEEEVRGGGKE 659
E EE+ E+ E + G+E
Sbjct: 168 ELEEQLALMEKSYELAAKYMPRGQE 192
Score = 40.1 bits (94), Expect = 0.004
Identities = 19/99 (19%), Positives = 32/99 (32%), Gaps = 1/99 (1%)
Query: 553 QSLWDNVPNTNKLKTIRPSI-KVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEE 611
Q L D+ ++K S + + + I+ R+ E E
Sbjct: 79 QDLADSFEKSDKESQDYSSSDSGFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYE 138
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ +EE+E E + E E E EE+ E
Sbjct: 139 YPKTDEEKELLREVEELESRLATEPSPAPELEEQLALME 177
Score = 32.0 bits (73), Expect = 1.2
Identities = 14/78 (17%), Positives = 25/78 (32%), Gaps = 17/78 (21%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQ-----------------EEEEEEEEEEEEEEE 642
++ + +EE +E E ++ E + +EE+E E
Sbjct: 93 QDYSSSDSGFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYEYPKTDEEKELLREV 152
Query: 643 EEEEEEEEEEVRGGGKEE 660
EE E E + E
Sbjct: 153 EELESRLATEPSPAPELE 170
Score = 31.2 bits (71), Expect = 1.7
Identities = 16/84 (19%), Positives = 20/84 (23%), Gaps = 14/84 (16%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEE--------------EEEEEEEEVQEEEEEEEEEEEE 639
G EE +E E E + +E+E E EE E
Sbjct: 97 SSDSGFDEEPDEPAETAGSLRPIRSSAAAYRDINRELGSFYEYPKTDEEKELLREVEELE 156
Query: 640 EEEEEEEEEEEEEVRGGGKEEISL 663
E E E S
Sbjct: 157 SRLATEPSPAPELEEQLALMEKSY 180
>gnl|CDD|221429 pfam12118, SprA-related, SprA-related family. This protein is
found in bacteria. Proteins in this family are typically
between 234 to 465 amino acids in length. There is a
conserved GEV sequence motif.Most members are annotated
as being SprA-related.
Length = 261
Score = 44.0 bits (104), Expect = 1e-04
Identities = 18/78 (23%), Positives = 42/78 (53%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+S+ GS E +L + +E +++ E +EE EE E+++ E +
Sbjct: 37 SSEASNAGSGSSEQKAKLKGQASTAAGSASQELQKQASESNDEEVVGEEEPEKDQAEAGK 96
Query: 637 EEEEEEEEEEEEEEEEVR 654
+ ++++E++++EE++VR
Sbjct: 97 QLSQKQQEQQQQEEKQVR 114
Score = 40.9 bits (96), Expect = 0.001
Identities = 16/56 (28%), Positives = 35/56 (62%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+++ E +EE EEE E+++ E Q ++++E++++EE++ E + + EVR
Sbjct: 69 LQKQASESNDEEVVGEEEPEKDQAEAGKQLSQKQQEQQQQEEKQVRELKARDREVR 124
Score = 32.1 bits (73), Expect = 0.73
Identities = 12/52 (23%), Positives = 29/52 (55%), Gaps = 3/52 (5%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+E +++ E +EE V EEE E+++ E ++ ++++E+ + K+
Sbjct: 64 SASQELQKQASESNDEEVV---GEEEPEKDQAEAGKQLSQKQQEQQQQEEKQ 112
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in the
concave surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 41.5 bits (98), Expect = 1e-04
Identities = 17/45 (37%), Positives = 29/45 (64%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++ + +EE+EEE E + + E+E++ E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 40.3 bits (95), Expect = 3e-04
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+EE+EEE E + + E+E+ + E + EEEEEE++ EE
Sbjct: 66 VGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 39.2 bits (92), Expect = 8e-04
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++ + +EE+EEE E + + QE+ + E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 38.8 bits (91), Expect = 0.001
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEE--EEEEEEEEEEEEE 651
++ + +EE+EEE E + + E+E+ + E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 38.0 bits (89), Expect = 0.002
Identities = 17/45 (37%), Positives = 29/45 (64%), Gaps = 2/45 (4%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEE--EEEEEEEEEEEEE 652
++ + +EE+EEE E ++ E+E+ + E EEEEEE++ EE
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQRLLEE 108
Score = 31.9 bits (73), Expect = 0.27
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ + +EE+EE +E + + E+E+ + E EEEEEE+ R
Sbjct: 64 DDVGDGDEEDEEEREAKRKLEQEKIDNAEPLTEEEEEEKQR 104
>gnl|CDD|237628 PRK14156, PRK14156, heat shock protein GrpE; Provisional.
Length = 177
Score = 42.9 bits (101), Expect = 1e-04
Identities = 22/46 (47%), Positives = 25/46 (54%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
EE + EE EEE E E EE EEV EE E+ E E E +E E
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFE 47
Score = 42.5 bits (100), Expect = 2e-04
Identities = 21/46 (45%), Positives = 24/46 (52%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE + EE EEE E E EE EE EE E+ E E E +E E
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFE 47
Score = 42.1 bits (99), Expect = 2e-04
Identities = 21/46 (45%), Positives = 25/46 (54%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE + EE EEE E E EE V+E EE E+ E E E +E E
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFE 47
Score = 41.0 bits (96), Expect = 5e-04
Identities = 21/46 (45%), Positives = 25/46 (54%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
EE + EE EEE E E EE EE V+E E+ E E E +E E
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFE 47
Score = 40.2 bits (94), Expect = 0.001
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EE + EE EEE E E EE E EE E+ E E E +E E
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFE 47
Score = 39.8 bits (93), Expect = 0.002
Identities = 20/45 (44%), Positives = 23/45 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E + EE EEE E E EE EE EE E+ E E E +E E
Sbjct: 3 EEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFE 47
Score = 39.4 bits (92), Expect = 0.002
Identities = 20/46 (43%), Positives = 23/46 (50%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE + EE EEE E E E EE EE E+ E E E +E E
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFE 47
Score = 39.0 bits (91), Expect = 0.002
Identities = 19/41 (46%), Positives = 22/41 (53%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE + EE EEEV+ E EE EE EE E+ E E R
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANER 42
Score = 38.3 bits (89), Expect = 0.005
Identities = 22/60 (36%), Positives = 27/60 (45%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE EEE E E EE EE EE E E E E +E E + E + ++ EE
Sbjct: 8 EEVEEEVEATETEETVEEVVEETPEKSELELANERADEFENKYLRAHAEMQNIQRRANEE 67
Score = 37.9 bits (88), Expect = 0.007
Identities = 19/46 (41%), Positives = 22/46 (47%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E + EE EEE E E EE EE E E+ E E E +E E
Sbjct: 2 SEEIKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFE 47
Score = 37.5 bits (87), Expect = 0.008
Identities = 18/43 (41%), Positives = 23/43 (53%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
I+ E EEE E E EE EE EE E+ E++ E +E E
Sbjct: 5 IKNEEVEEEVEATETEETVEEVVEETPEKSELELANERADEFE 47
Score = 29.0 bits (65), Expect = 4.8
Identities = 16/38 (42%), Positives = 19/38 (50%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
+ EE + EE EEE E E EE EE K E+ L
Sbjct: 1 MSEEIKNEEVEEEVEATETEETVEEVVEETPEKSELEL 38
>gnl|CDD|220605 pfam10156, Med17, Subunit 17 of Mediator complex. This Mediator
complex subunit was formerly known as Srb4 in yeasts or
Trap80 in Drosophila and human. The Med17 subunit is
located within the head domain and is essential for cell
viability to the extent that a mutant strain of
cerevisiae lacking it shows all RNA polymerase
II-dependent transcription ceasing at non-permissive
temperatures.
Length = 454
Score = 44.3 bits (105), Expect = 2e-04
Identities = 21/83 (25%), Positives = 42/83 (50%), Gaps = 3/83 (3%)
Query: 568 IRPSIKVWKTSDQDEIGSPRIENIIQLI---RRGEREEEEEEEEEEEEEEEEEEEEEEEE 624
I S++ ++ +E +I+ I R R+ EE EE +E + + EE
Sbjct: 12 IPLSLRPLIDKPAEDEDPLSLEELIERINQERGSFRDLTEESLREEIAKEAAKIDFSEES 71
Query: 625 EVQEEEEEEEEEEEEEEEEEEEE 647
+ +E++EE++ ++ EE ++ EE
Sbjct: 72 DEEEDDEEDDNDDSEENKDTVEE 94
Score = 31.6 bits (72), Expect = 1.6
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE EE+ +E + + EE +EEE++EE++ ++
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDD 84
Score = 31.2 bits (71), Expect = 2.2
Identities = 12/44 (27%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 623 EEEVQEE-EEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
EE ++EE +E + + EE +EEE++EE++ + + ++
Sbjct: 51 EESLREEIAKEAAKIDFSEESDEEEDDEEDDNDDSEENKDTVEE 94
Score = 30.8 bits (70), Expect = 2.4
Identities = 10/29 (34%), Positives = 20/29 (68%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
EE +EEE++EE++ ++ EE ++ E +
Sbjct: 69 EESDEEEDDEEDDNDDSEENKDTVEEFPK 97
>gnl|CDD|225288 COG2433, COG2433, Uncharacterized conserved protein [Function
unknown].
Length = 652
Score = 44.7 bits (106), Expect = 2e-04
Identities = 26/77 (33%), Positives = 38/77 (49%), Gaps = 4/77 (5%)
Query: 582 EIGSPRIENIIQ-LIRRGEREEE---EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E+G + I+ L+ RG E + +EEE E+E EEEE E E+ ++ EE
Sbjct: 370 ELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEE 429
Query: 638 EEEEEEEEEEEEEEEVR 654
E EEE E + E+
Sbjct: 430 TVERLEEENSELKRELE 446
Score = 40.5 bits (95), Expect = 0.003
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ + + + + EE E+E EEEE E E+ + EE E EEE E + E EE +
Sbjct: 390 LAEALSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELK 449
Query: 651 EEV 653
E+
Sbjct: 450 REI 452
Score = 39.7 bits (93), Expect = 0.005
Identities = 23/70 (32%), Positives = 34/70 (48%), Gaps = 4/70 (5%)
Query: 597 RGEREEEEEEEEEEEEEEE----EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E E+E EEEE E E+ ++ EE V+ EEE E + E EE + E E+ E
Sbjct: 398 KEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLES 457
Query: 653 VRGGGKEEIS 662
+ E+
Sbjct: 458 ELERFRREVR 467
Score = 39.3 bits (92), Expect = 0.006
Identities = 23/100 (23%), Positives = 44/100 (44%), Gaps = 7/100 (7%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE----EEEEEEEEEE 642
+ + + +RE E+ E E E E ++ ++ E++ + E+E EE+++
Sbjct: 437 ENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKR 496
Query: 643 EEEEEEEEEEVRGGGKEEIS---LHFYVLYVLSKGKIAGL 679
EE E + E+R K E+S V+ L+ I
Sbjct: 497 VEELERKLAELRKMRKLELSGKGTPVKVVEKLTLEAIEEA 536
Score = 38.9 bits (91), Expect = 0.008
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ +EEE E+E EEEE +E E+ ++ EE E EEE E++
Sbjct: 395 SKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKR 443
Score = 38.5 bits (90), Expect = 0.012
Identities = 21/90 (23%), Positives = 38/90 (42%)
Query: 565 LKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEE 624
+ RP K ++ + + I +L ER EEE E + E EE + E E+ E
Sbjct: 398 KEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIEKLES 457
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E++ E ++ ++ E + E +
Sbjct: 458 ELERFRREVRDKVRKDREIRARDRRIERLE 487
Score = 36.6 bits (85), Expect = 0.047
Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 11/78 (14%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEE------EEEEEEVQE-----EEEEEEEE 636
+ + + R E+E EEEE E E+ + E EEE E EE + E E
Sbjct: 394 LSKVKEEERPREKEGTEEEERREITVYEKRIKKLEETVERLEEENSELKRELEELKREIE 453
Query: 637 EEEEEEEEEEEEEEEEVR 654
+ E E E E ++VR
Sbjct: 454 KLESELERFRREVRDKVR 471
Score = 33.9 bits (78), Expect = 0.32
Identities = 21/79 (26%), Positives = 34/79 (43%), Gaps = 11/79 (13%)
Query: 595 IRRGEREEEEEEEEEEEEE-----------EEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+ + ER+ E ++ E E + +EEE +E+E EEEE E
Sbjct: 361 LEKVERKLPELGIWKDVERIKALVIRGYPLAEALSKVKEEERPREKEGTEEEERREITVY 420
Query: 644 EEEEEEEEEVRGGGKEEIS 662
E+ ++ EE +EE S
Sbjct: 421 EKRIKKLEETVERLEEENS 439
Score = 32.8 bits (75), Expect = 0.73
Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 588 IENIIQLIRRGE-----REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
E +Q+IR E EE EE ++ EE E ++EE++ EE
Sbjct: 595 PEGDVQIIRLDEFAVVDSEELRRAIEEWKKRFEERERRQKEEDILRIIEE 644
Score = 30.8 bits (70), Expect = 2.5
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ EE++ EE ++ EE E ++EE+
Sbjct: 611 DSEELRRAIEEWKKRFEERERRQKEED 637
Score = 30.1 bits (68), Expect = 5.0
Identities = 13/42 (30%), Positives = 18/42 (42%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ EE EE + EE E ++EE+ EE E R
Sbjct: 611 DSEELRRAIEEWKKRFEERERRQKEEDILRIIEEYRRERRRE 652
>gnl|CDD|218954 pfam06246, Isy1, Isy1-like splicing family. Isy1 protein is
important in the optimisation of splicing.
Length = 253
Score = 43.5 bits (103), Expect = 2e-04
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
G R+EE+ E E E E+E E+ EE +E ++E+ + EE+E EE+ +++
Sbjct: 168 GYRDEEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFVA 227
Query: 658 KEEI 661
+
Sbjct: 228 HVPV 231
Score = 41.5 bits (98), Expect = 8e-04
Identities = 18/60 (30%), Positives = 34/60 (56%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYV 667
+EE+ E E E E+E+ E+ EE +E ++E+ + EE+E EE++ ++ +V
Sbjct: 170 RDEEDGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFVAHV 229
Score = 35.8 bits (83), Expect = 0.052
Identities = 20/65 (30%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE-----------EEEEE 649
E E E E+E E+ EE +E ++E++Q EE+E EE+ +++ +EE E
Sbjct: 179 EYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFVAHVPVPTQEEVE 238
Query: 650 EEEVR 654
E +
Sbjct: 239 EWLLE 243
Score = 35.0 bits (81), Expect = 0.087
Identities = 18/60 (30%), Positives = 31/60 (51%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E E E E+E E+ EE +E ++ + EE+E EE+ +++ E V +EE+
Sbjct: 178 LEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFVAHVPVPTQEEV 237
Score = 33.4 bits (77), Expect = 0.30
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
G E E E E+E E+ EE +E ++E + EE+E EE+ +++ E
Sbjct: 174 DGVLLEYEAEREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAE 224
Score = 30.4 bits (69), Expect = 2.7
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ E+ +E ++ + EE+E EE+ +++ E V +EE EE E+
Sbjct: 185 EKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFVAHVPVPTQEEVEEWLLEK 244
Query: 640 EEEE 643
+ E
Sbjct: 245 RKRE 248
Score = 30.0 bits (68), Expect = 3.2
Identities = 16/66 (24%), Positives = 31/66 (46%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E IE +++ + + E+ + EE+E EE+ +++ E +EE EE
Sbjct: 183 EREKELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFVAHVPVPTQEEVEEWLL 242
Query: 642 EEEEEE 647
E+ + E
Sbjct: 243 EKRKRE 248
Score = 30.0 bits (68), Expect = 3.2
Identities = 15/62 (24%), Positives = 30/62 (48%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E I +L+ + ++E+ + EE+E EE+ +++ +EE EE E+ +
Sbjct: 187 ELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFVAHVPVPTQEEVEEWLLEKRK 246
Query: 649 EE 650
E
Sbjct: 247 RE 248
Score = 30.0 bits (68), Expect = 3.6
Identities = 17/63 (26%), Positives = 33/63 (52%), Gaps = 8/63 (12%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE--------EEEEEEEEEEEEE 648
+ E+ EE +E ++E+ + EE+E EE++ +++ E +EE EE E+
Sbjct: 186 KELIEKLVEEWKEIQDEDLQAEEDEREEDIYIPLDDDAEFVAHVPVPTQEEVEEWLLEKR 245
Query: 649 EEE 651
+ E
Sbjct: 246 KRE 248
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is unknown,
it is known to be an essential gene.
Length = 832
Score = 44.6 bits (106), Expect = 2e-04
Identities = 21/68 (30%), Positives = 36/68 (52%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E EE EEE + E E E + ++E+E EE+ EE+E+ ++ E+ ++ E+ K
Sbjct: 231 ETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKK 290
Query: 659 EEISLHFY 666
+E F
Sbjct: 291 DEELFWFE 298
Score = 43.8 bits (104), Expect = 3e-04
Identities = 19/68 (27%), Positives = 31/68 (45%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E EE EEE + E E E + QE+E EE+ EE+E+ ++ E++ +
Sbjct: 228 ETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILK 287
Query: 661 ISLHFYVL 668
+
Sbjct: 288 EKKDEELF 295
Score = 42.7 bits (101), Expect = 7e-04
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+E E EE EEE + E E E + ++E+E EE+ EE+E+ ++ E +
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEI 285
Score = 41.9 bits (99), Expect = 0.001
Identities = 19/68 (27%), Positives = 32/68 (47%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E EE EEE + E E E + ++ QE EE+ EE+E+ ++ E+ + KE+
Sbjct: 231 ETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKK 290
Query: 662 SLHFYVLY 669
+
Sbjct: 291 DEELFWFE 298
Score = 41.1 bits (97), Expect = 0.002
Identities = 18/62 (29%), Positives = 30/62 (48%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+E E EE EEE + E E E + ++E+E EE+ EE+E+ ++ E +
Sbjct: 227 KETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEIL 286
Query: 662 SL 663
Sbjct: 287 KE 288
Score = 35.0 bits (81), Expect = 0.16
Identities = 16/69 (23%), Positives = 35/69 (50%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
K + E E +++ E + ++E+E EE+ EE+E+ + E+ ++ E
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLE 284
Query: 636 EEEEEEEEE 644
+E+++EE
Sbjct: 285 ILKEKKDEE 293
Score = 33.8 bits (78), Expect = 0.32
Identities = 13/55 (23%), Positives = 30/55 (54%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E E + ++E+E EE+ ++E+ ++ E+ ++ E +E+++EE
Sbjct: 239 TDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
Score = 31.5 bits (72), Expect = 1.9
Identities = 16/69 (23%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
Query: 573 KVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEE-----EEEEEEEEEEEEEEVQ 627
K+ +TS+ +E I ++E+E EE+ EE+E+ ++ E+ ++++
Sbjct: 225 KLKETSETEEREEETDVEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLE 284
Query: 628 EEEEEEEEE 636
+E+++EE
Sbjct: 285 ILKEKKDEE 293
Score = 31.5 bits (72), Expect = 2.0
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ E + ++E+E EE+ EE+ ++ E+ ++ E +E+++EE
Sbjct: 241 VEIETTSETKGTKQEQEGSTEEDPSLFSEEKEDPDKTEDLDKLEILKEKKDEE 293
>gnl|CDD|184536 PRK14145, PRK14145, heat shock protein GrpE; Provisional.
Length = 196
Score = 42.6 bits (100), Expect = 2e-04
Identities = 14/56 (25%), Positives = 33/56 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E +EEE++ E+ E E+E+ Q+ + +++ +E EE +++ +++E E +
Sbjct: 7 EINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQ 62
Score = 42.6 bits (100), Expect = 2e-04
Identities = 14/50 (28%), Positives = 29/50 (58%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE E+E +EEE++ Q E E+E+ ++ + +++ +E EE++
Sbjct: 2 EEVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELK 51
Score = 41.4 bits (97), Expect = 4e-04
Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 5/58 (8%)
Query: 599 EREEEEEEEEEE-----EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E+E +EEE+ E+ E E+E+ Q + +++ +E EE +++ +++E E
Sbjct: 3 EVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVE 60
Score = 41.4 bits (97), Expect = 5e-04
Identities = 15/58 (25%), Positives = 33/58 (56%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE E+E +EEE++ E+++ E+E+ ++ + +++ +E EE + + KE
Sbjct: 2 EEVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEV 59
Score = 40.7 bits (95), Expect = 9e-04
Identities = 15/59 (25%), Positives = 34/59 (57%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EE E+E +EEE++ E+ E E+E+ ++ + +++ +E EE +++++ E
Sbjct: 2 EEVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVE 60
Score = 40.3 bits (94), Expect = 0.001
Identities = 15/59 (25%), Positives = 32/59 (54%), Gaps = 5/59 (8%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE-----EEEEEEEEE 652
E+E +EEE++ E+ E E+ Q ++ + +++ +E EE +++E E +E
Sbjct: 5 EKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQE 63
Score = 38.4 bits (89), Expect = 0.005
Identities = 19/87 (21%), Positives = 45/87 (51%), Gaps = 12/87 (13%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE--------- 639
E + + E+ E E+E+ ++ + +++ +E EE++++ +++E E +E
Sbjct: 13 EKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEELKQKLQQKEVEAQEYLDIAQRLK 72
Query: 640 ---EEEEEEEEEEEEEVRGGGKEEISL 663
E + E+E+ E+ GKE++ L
Sbjct: 73 AEFENYRKRTEKEKSEMVEYGKEQVIL 99
Score = 34.1 bits (78), Expect = 0.14
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EE E+E +EEE+ E+ E E+E+ ++ + ++ EE+
Sbjct: 2 EEVEKEINKEEEKDVNNLSSNEQMEGPPEDEQAQQNQPQQQTVDEIEEL 50
>gnl|CDD|221581 pfam12446, DUF3682, Protein of unknown function (DUF3682). This
domain family is found in eukaryotes, and is typically
between 125 and 136 amino acids in length.
Length = 133
Score = 41.7 bits (98), Expect = 2e-04
Identities = 16/40 (40%), Positives = 26/40 (65%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+EEEEEEEE E++++ +E +VQ+ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 37.9 bits (88), Expect = 0.004
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+EEEEEEEE E++++ +E Q ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 37.9 bits (88), Expect = 0.004
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
R+EEEEEEEE E++++ +E + ++ + E E EE
Sbjct: 93 HTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 37.5 bits (87), Expect = 0.005
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+EEEEEEEE E Q++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 37.1 bits (86), Expect = 0.007
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+EEEEEEEE E++++ +E + ++ Q+ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 36.7 bits (85), Expect = 0.008
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
G +EEEEEEEE E++++ +E + ++ Q E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 36.7 bits (85), Expect = 0.009
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+EEEEEEEE E+ Q+ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 36.3 bits (84), Expect = 0.013
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+EEEEEEEE E++ Q +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 35.6 bits (82), Expect = 0.020
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+EEEEEEEE E++++ E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 34.0 bits (78), Expect = 0.067
Identities = 11/26 (42%), Positives = 19/26 (73%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEVR 654
+EEEEEEEE E++++ +E +V+
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQ 117
Score = 32.9 bits (75), Expect = 0.18
Identities = 13/40 (32%), Positives = 24/40 (60%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+EEEEEEEE ++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 31.3 bits (71), Expect = 0.67
Identities = 14/37 (37%), Positives = 24/37 (64%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
R E EEEEEE E++++ +E + ++ ++ E E EE
Sbjct: 95 RQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 30.9 bits (70), Expect = 0.79
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+EEEEEEEE +++++ +E + ++ ++ E E EE
Sbjct: 92 GHTRQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
Score = 29.4 bits (66), Expect = 2.9
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
R+ E EEEEE E++++ +E + ++ ++ E E EE
Sbjct: 95 RQEEEEEEEENEKQQQSDEAQVQQHQQHEHPAENGEE 131
>gnl|CDD|148682 pfam07222, PBP_sp32, Proacrosin binding protein sp32. This family
consists of several mammalian specific proacrosin
binding protein sp32 sequences. sp32 is a sperm specific
protein which is known to bind with with 55- and 53-kDa
proacrosins and the 49-kDa acrosin intermediate. The
exact function of sp32 is unclear, it is thought however
that the binding of sp32 to proacrosin may be involved
in packaging the acrosin zymogen into the acrosomal
matrix.
Length = 243
Score = 43.1 bits (101), Expect = 2e-04
Identities = 27/112 (24%), Positives = 51/112 (45%), Gaps = 14/112 (12%)
Query: 562 TNKLKTIRPSIKVWKTSDQDEIGS--------------PRIENIIQLIRRGEREEEEEEE 607
N LK PS +V T+ I R+ N ++ + + +
Sbjct: 132 PNTLKEAEPSAEVQPTTMTLPIAEHPTITENQSFQPWPERLHNNVEELLQSSLSLGGSVQ 191
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+ + ++E+ + +E +QE + EE++ +EE+EEEE EEE ++E G +
Sbjct: 192 VKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
Score = 39.6 bits (92), Expect = 0.003
Identities = 16/56 (28%), Positives = 34/56 (60%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ + + ++E+ + +E +E + EE++ +EE+EEEE EEE ++ G G ++
Sbjct: 188 GSVQVKAPKPKQEQLLSKLQEYLQEHKTEEKQPQEEQEEEEVEEEAKQEEGQGTDD 243
>gnl|CDD|237378 PRK13406, bchD, magnesium chelatase subunit D; Provisional.
Length = 584
Score = 44.2 bits (105), Expect = 2e-04
Identities = 11/40 (27%), Positives = 21/40 (52%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+ EEE E++++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 43.9 bits (104), Expect = 2e-04
Identities = 12/46 (26%), Positives = 23/46 (50%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
R R + EEE E++++ ++EEE+++ E+ EE
Sbjct: 254 RATRLPAPPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 43.1 bits (102), Expect = 5e-04
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+ EEE E++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 42.7 bits (101), Expect = 5e-04
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+ EEE E+++ E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 41.9 bits (99), Expect = 0.001
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ EEE E ++ E+EEE+++ E+ EE E VR
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVLEAVR 306
Score = 41.9 bits (99), Expect = 0.001
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ EEE E+ + E+EEE+++ E+ EE
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEE 299
Score = 38.5 bits (90), Expect = 0.010
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
+ +EE E++++ E+EEE+++ EEI L
Sbjct: 260 APPQPPEEEPPPPPPPPEDDDDPPEDEEEQDDAEDRALEEIVL 302
>gnl|CDD|237258 PRK12903, secA, preprotein translocase subunit SecA; Reviewed.
Length = 925
Score = 44.3 bits (105), Expect = 2e-04
Identities = 34/164 (20%), Positives = 64/164 (39%), Gaps = 13/164 (7%)
Query: 517 LVDVAAKNP-----TTGTTPFKLCTPEDFKPFVTALMNSE--WQSLWDNVPNTNKLKTIR 569
LV + KNP GT F + E + +L N+ + L ++ +
Sbjct: 740 LVQYSQKNPYQVYTEEGTKKFNILLQEIAYDVIVSLFNNPNAEKILIITEILSDGINNSD 799
Query: 570 PSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
+ + E+ IE+ + ++ + EE EE E EE++ ++E++ E
Sbjct: 800 INDRP------QELIDQIIESEEERLKALRIQREEMLMRPEELELINEEQKNLKQEIKLE 853
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYVLYVLSK 673
E +E EEE + E + E E + K+ L ++
Sbjct: 854 LSEIQEAEEEIQNINENKNEFVEFKNDPKKLNKLIIAKDVLIKL 897
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed.
Length = 1068
Score = 44.3 bits (105), Expect = 2e-04
Identities = 14/53 (26%), Positives = 18/53 (33%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E E ++E + EE E E V E E + E E E
Sbjct: 944 EHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTA 996
Score = 43.9 bits (104), Expect = 3e-04
Identities = 14/62 (22%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE---EEEEEEEEEEEEEEEEEEEEEE 652
R ++ E E+ ++E+++ E + +E+ ++E + EE+ +E E+EE
Sbjct: 653 TRESQQAEVTEKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEER 712
Query: 653 VR 654
V+
Sbjct: 713 VQ 714
Score = 43.9 bits (104), Expect = 3e-04
Identities = 13/53 (24%), Positives = 18/53 (33%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+E E E E ++E + EE E E E E + E E
Sbjct: 940 QEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVE 992
Score = 43.9 bits (104), Expect = 3e-04
Identities = 15/54 (27%), Positives = 19/54 (35%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E E E ++E + EE E EV E E + E E E
Sbjct: 941 EVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETV 994
Score = 42.3 bits (100), Expect = 0.001
Identities = 12/53 (22%), Positives = 29/53 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+ ++E+++ E + +E+ + Q+E + EE+ +E E+EE ++
Sbjct: 663 EKARTQDEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQ 715
Score = 41.2 bits (97), Expect = 0.002
Identities = 13/53 (24%), Positives = 18/53 (33%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+E E E E ++E + EE E E E + E EV
Sbjct: 939 AQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEV 991
Score = 40.8 bits (96), Expect = 0.002
Identities = 14/52 (26%), Positives = 18/52 (34%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E ++E + EE E E E EV + E E E E E
Sbjct: 950 VEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEV 1001
Score = 40.8 bits (96), Expect = 0.002
Identities = 14/61 (22%), Positives = 21/61 (34%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
Q+I + +E E E E ++E + EE E E E E + E
Sbjct: 929 QVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVA 988
Query: 653 V 653
Sbjct: 989 A 989
Score = 40.8 bits (96), Expect = 0.002
Identities = 14/52 (26%), Positives = 18/52 (34%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E ++E + EE E E E E V + E E E E E
Sbjct: 951 EPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVA 1002
Score = 39.6 bits (93), Expect = 0.007
Identities = 13/55 (23%), Positives = 18/55 (32%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++E + EE E E E E + E E E E E +V
Sbjct: 952 PQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006
Score = 39.3 bits (92), Expect = 0.008
Identities = 13/56 (23%), Positives = 16/56 (28%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E ++E + EE E E E E E E E E E
Sbjct: 951 EPQDETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQV 1006
Score = 38.5 bits (90), Expect = 0.014
Identities = 13/55 (23%), Positives = 16/55 (29%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ EE E E E E + V E E E E E + E
Sbjct: 958 DIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVE 1012
Score = 38.1 bits (89), Expect = 0.017
Identities = 12/56 (21%), Positives = 15/56 (26%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E + EE E E E E + E E E E E +
Sbjct: 955 ETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEAT 1010
Score = 36.6 bits (85), Expect = 0.049
Identities = 14/56 (25%), Positives = 16/56 (28%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE E E E E + V E E E E E + E V
Sbjct: 957 ADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEATVE 1012
Score = 36.6 bits (85), Expect = 0.053
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R R E E EE + +++ E +E ++ E E+ ++E+++ E R
Sbjct: 624 RDNRTRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRERQR 681
Score = 36.6 bits (85), Expect = 0.058
Identities = 13/55 (23%), Positives = 16/55 (29%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E + EE E E E E + E E E E E + E
Sbjct: 955 ETADIEEAAETAEVVVAEPEVVAQPAAPVVAEVAAEVETVTAVEPEVAPAQVPEA 1009
Score = 36.2 bits (84), Expect = 0.073
Identities = 15/51 (29%), Positives = 22/51 (43%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E+ + E + +E E E V E ++E + EE E E E E V
Sbjct: 926 EQPQVITESDVAVAQEVAEHAEPVVEPQDETADIEEAAETAEVVVAEPEVV 976
Score = 36.2 bits (84), Expect = 0.074
Identities = 13/50 (26%), Positives = 19/50 (38%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++ + EE+ E EE + + EV E E E EE V
Sbjct: 851 QDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVV 900
Score = 35.4 bits (82), Expect = 0.11
Identities = 12/53 (22%), Positives = 17/53 (32%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ + EE+ E EE + + E E E E EE E
Sbjct: 852 DVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEP 904
Score = 35.0 bits (81), Expect = 0.17
Identities = 13/57 (22%), Positives = 18/57 (31%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
R + + EE+ E EE + + E E E E EE E
Sbjct: 849 RPQDVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQ 905
Score = 33.5 bits (77), Expect = 0.42
Identities = 12/55 (21%), Positives = 19/55 (34%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ + EE+ E EE + + E V+ E E EE E +
Sbjct: 852 DVQVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQP 906
Score = 33.5 bits (77), Expect = 0.43
Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 596 RRGEREEEEEEEEEEEEEE------EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
RR R+ E E EE + +++ E E Q+ E E+ ++E+++ E
Sbjct: 620 RRDTRDNRTRREGRENREENRRNRRQAQQQTAETRESQQAEVTEKARTQDEQQQAPRRER 679
Query: 650 ----EEEVR 654
+E R
Sbjct: 680 QRRRNDEKR 688
Score = 33.5 bits (77), Expect = 0.47
Identities = 10/44 (22%), Positives = 23/44 (52%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
++ R E + +E+ + ++E + EE +E E+EE ++
Sbjct: 672 QQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQ 715
Score = 33.1 bits (76), Expect = 0.56
Identities = 15/62 (24%), Positives = 21/62 (33%), Gaps = 7/62 (11%)
Query: 599 EREEEEEEEEEEEEEEEEE-------EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ EE+ E EE + + E E V+ E EE E + EE E
Sbjct: 854 QVEEQREAEEVQVQPVVAEVPVAAAVEPVVSAPVVEAVAEVVEEPVVVAEPQPEEVVVVE 913
Query: 652 EV 653
Sbjct: 914 TT 915
Score = 31.9 bits (73), Expect = 1.4
Identities = 9/47 (19%), Positives = 24/47 (51%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
++ E + +E+ + ++E + V+E+ +E E+EE ++
Sbjct: 669 DEQQQAPRRERQRRRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQ 715
Score = 31.5 bits (72), Expect = 2.0
Identities = 19/76 (25%), Positives = 30/76 (39%), Gaps = 18/76 (23%)
Query: 596 RRGER----EEEEEEEEEEEEEEEEEEEEEEEEEVQ--------------EEEEEEEEEE 637
RR + ++E + EE+ +E E+EE ++VQ E+ EE
Sbjct: 682 RRNDEKRQAQQEAKALNVEEQSVQETEQEERVQQVQPRRKQRQLNQKVRIEQSVAEEAVA 741
Query: 638 EEEEEEEEEEEEEEEV 653
EE E +EV
Sbjct: 742 PVVEETVAAEPVVQEV 757
Score = 30.8 bits (70), Expect = 3.4
Identities = 9/54 (16%), Positives = 21/54 (38%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE + +E+ + E + E +++ + + E + + E E R
Sbjct: 583 GEETKPQEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRDNRTRREGRENR 636
>gnl|CDD|233467 TIGR01554, major_cap_HK97, phage major capsid protein, HK97 family.
This model family represents the major capsid protein
component of the heads (capsids) of bacteriophage HK97,
phi-105, P27, and related phage. This model represents
one of several analogous families lacking detectable
sequence similarity. The gene encoding this component is
typically located in an operon encoding the small and
large terminase subunits, the portal protein and the
prohead or maturation protease [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 384
Score = 43.5 bits (103), Expect = 2e-04
Identities = 18/65 (27%), Positives = 29/65 (44%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
R E +E + E+E+ E EEE+ E +EE ++ + E + EE +E E
Sbjct: 4 LREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPA 63
Query: 656 GGKEE 660
E
Sbjct: 64 ASGEG 68
Score = 43.5 bits (103), Expect = 3e-04
Identities = 19/60 (31%), Positives = 32/60 (53%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ E+E+ E EEE+ E + +EE+ + + E + EE +E E + E GG +EE
Sbjct: 16 RKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEE 75
Score = 40.4 bits (95), Expect = 0.002
Identities = 16/78 (20%), Positives = 31/78 (39%), Gaps = 1/78 (1%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEE-EEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E+E+ E EEE+ E + +EE +++ E + EE +E E + E +
Sbjct: 19 TEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASGEGGGGEEEEEEA 78
Query: 660 EISLHFYVLYVLSKGKIA 677
+ + Y+
Sbjct: 79 KAEAAEFRAYLRGGDDAL 96
Score = 40.4 bits (95), Expect = 0.002
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 8/70 (11%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE--------EEEEEEEEEEEEEE 650
E E E +E + E+E+ E EE + E + +EE + EE +E E +
Sbjct: 3 ELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKP 62
Query: 651 EEVRGGGKEE 660
GG E
Sbjct: 63 AASGEGGGGE 72
Score = 40.0 bits (94), Expect = 0.003
Identities = 20/83 (24%), Positives = 36/83 (43%), Gaps = 2/83 (2%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEE--EEEEEVQEEEEEEEEEEEEEEEEE 644
+ + + +R+ +E+ E EEE+ E + +EE + + E+ EE +E E +
Sbjct: 7 ALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEAKPAASG 66
Query: 645 EEEEEEEEVRGGGKEEISLHFYV 667
E EEE E Y+
Sbjct: 67 EGGGGEEEEEEAKAEAAEFRAYL 89
Score = 33.5 bits (77), Expect = 0.32
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E E E +E + E+E+ EEE+ E + +EE ++ + E + E
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLE 52
Score = 31.9 bits (73), Expect = 0.98
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+E E E +E + E+E++ E EEE+ E + +EE ++ + E + + E
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDEL 58
Score = 31.2 bits (71), Expect = 1.8
Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 8/65 (12%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE--------EEEEEEEEEEEV 653
+E E E +E + E+E+ + EEE+ E + +EE + EE +E E
Sbjct: 1 LKELREALAELAKELRKLTEDEKLAEAEEEKAEYDALKEEIDKLDAEIDRLEELLDELEA 60
Query: 654 RGGGK 658
+
Sbjct: 61 KPAAS 65
>gnl|CDD|222160 pfam13476, AAA_23, AAA domain.
Length = 204
Score = 42.5 bits (100), Expect = 2e-04
Identities = 24/72 (33%), Positives = 42/72 (58%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ + S + + L ER EE + + +E++E EE E+E EE E++ E+ EE+
Sbjct: 124 DELLKSDKEILPLLLYLGQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEK 183
Query: 640 EEEEEEEEEEEE 651
E+++E EE +EE
Sbjct: 184 EKKKELEELKEE 195
Score = 36.4 bits (84), Expect = 0.023
Identities = 23/61 (37%), Positives = 37/61 (60%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+R E++E EE E+E EE E+E++ E+ ++E+++E EE +EE EE EE
Sbjct: 144 RLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEELLEEL 203
Query: 649 E 649
E
Sbjct: 204 E 204
Score = 33.7 bits (77), Expect = 0.19
Identities = 24/67 (35%), Positives = 39/67 (58%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+G R+E + + + EE E+E EE E+E++ E+ EE ++++E EE +EE E
Sbjct: 138 LYLGQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELE 197
Query: 641 EEEEEEE 647
E EE E
Sbjct: 198 ELLEELE 204
Score = 30.2 bits (68), Expect = 2.6
Identities = 22/65 (33%), Positives = 33/65 (50%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
E + R E E+E EE E+E++ E+ EE+E++ + EE +EE EE
Sbjct: 140 LGQERLEELKFKRKEKKERLEELEKELEELEDEKDLLEKLLEEKEKKKELEELKEELEEL 199
Query: 639 EEEEE 643
EE E
Sbjct: 200 LEELE 204
>gnl|CDD|236410 PRK09202, nusA, transcription elongation factor NusA; Validated.
Length = 470
Score = 43.7 bits (104), Expect = 2e-04
Identities = 16/72 (22%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E ++ +R ER +E E E +EE+ ++ E + E + E+ + E+ E+
Sbjct: 399 EETVEELR--ERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQ 456
Query: 649 EEEEVRGGGKEE 660
+E+ +E
Sbjct: 457 AVDELIDIEGDE 468
Score = 43.7 bits (104), Expect = 2e-04
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE E E +EE EE E +E E E +EE+ ++ E + E ++
Sbjct: 387 PVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKG 446
Query: 661 IS 662
I
Sbjct: 447 IK 448
Score = 43.7 bits (104), Expect = 3e-04
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Query: 589 ENIIQ-LIRRG-EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E I Q L+ G EE EE E E +EE EE++E +E E E +EE+
Sbjct: 366 EEIAQLLVEEGFSSLEELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLA 425
Query: 647 EEEEE 651
++
Sbjct: 426 DDLLS 430
Score = 42.5 bits (101), Expect = 5e-04
Identities = 14/56 (25%), Positives = 25/56 (44%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E +EE EE E +E E E +E+ ++ E + E + E+ ++
Sbjct: 393 EIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIK 448
Score = 42.5 bits (101), Expect = 6e-04
Identities = 17/62 (27%), Positives = 28/62 (45%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EE E E +EE EE E +E ++ E +EE+ ++ E + E + K
Sbjct: 389 EELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIK 448
Query: 662 SL 663
+L
Sbjct: 449 TL 450
Score = 40.6 bits (96), Expect = 0.002
Identities = 15/54 (27%), Positives = 22/54 (40%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE E E +EE EE E +E E +EE+ ++ E + E
Sbjct: 387 PVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAF 440
Score = 39.5 bits (93), Expect = 0.005
Identities = 14/61 (22%), Positives = 26/61 (42%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+L+ +EE EE E +E E E +EE ++ E + E + E+ +
Sbjct: 390 ELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKT 449
Query: 653 V 653
+
Sbjct: 450 L 450
Score = 38.7 bits (91), Expect = 0.008
Identities = 16/57 (28%), Positives = 25/57 (43%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E E E +EE EE E +E E E +EE+ ++ E + E + +G
Sbjct: 390 ELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKG 446
Score = 37.5 bits (88), Expect = 0.024
Identities = 16/82 (19%), Positives = 34/82 (41%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+E+ +E ++++ E EE E +E E E +EE+ E + E
Sbjct: 381 EELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEEKLADDLLSLEGLDRELAF 440
Query: 641 EEEEEEEEEEEEVRGGGKEEIS 662
+ E+ + E++ +E+
Sbjct: 441 KLAEKGIKTLEDLAEQAVDELI 462
Score = 36.8 bits (86), Expect = 0.032
Identities = 13/64 (20%), Positives = 26/64 (40%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E +E E E +EE+ ++ ++ + E + E+ + E+ E+ V
Sbjct: 404 ELRERAKEALETEALAQEEKLADDLLSLEGLDRELAFKLAEKGIKTLEDLAEQAVDELID 463
Query: 659 EEIS 662
E
Sbjct: 464 IEGD 467
Score = 36.4 bits (85), Expect = 0.047
Identities = 20/77 (25%), Positives = 31/77 (40%), Gaps = 10/77 (12%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE----------EEEEEEEEEEEEEEEE 644
I E E+ + E + + E + +EE+ + EE EE E E
Sbjct: 337 IMTEEEASEKRQAEFDAILDLFMEALDIDEEIAQLLVEEGFSSLEELAYVPVEELLEIEG 396
Query: 645 EEEEEEEEVRGGGKEEI 661
+EE EE+R KE +
Sbjct: 397 FDEETVEELRERAKEAL 413
Score = 31.8 bits (73), Expect = 1.3
Identities = 19/73 (26%), Positives = 28/73 (38%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+E R ++ + +EE + EE EE V EE E E +EE
Sbjct: 341 EEASEKRQAEFDAILDLFMEALDIDEEIAQLLVEEGFSSLEELAYVPVEELLEIEGFDEE 400
Query: 641 EEEEEEEEEEEEV 653
EE E +E +
Sbjct: 401 TVEELRERAKEAL 413
Score = 31.8 bits (73), Expect = 1.5
Identities = 19/60 (31%), Positives = 26/60 (43%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ +EE + EE EE V+E E E +EE EE E +E E +EE
Sbjct: 363 DIDEEIAQLLVEEGFSSLEELAYVPVEELLEIEGFDEETVEELRERAKEALETEALAQEE 422
Score = 30.6 bits (70), Expect = 2.9
Identities = 21/95 (22%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Query: 572 IKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEE---EEEEEEEEEEEEEEEEEEVQE 628
I + + E + I+ L +EE + EE EE EE ++
Sbjct: 335 IDIMTEEEASEKRQAEFDAILDLFMEALDIDEEIAQLLVEEGFSSLEELAYVPVEELLEI 394
Query: 629 EEEEEEEEEE---------EEEEEEEEEEEEEEVR 654
E +EE EE E E +EE+ +++
Sbjct: 395 EGFDEETVEELRERAKEALETEALAQEEKLADDLL 429
>gnl|CDD|217902 pfam04111, APG6, Autophagy protein Apg6. In yeast, 15 Apg proteins
coordinate the formation of autophagosomes. Autophagy is
a bulk degradation process induced by starvation in
eukaryotic cells. Apg6/Vps30p has two distinct functions
in the autophagic process, either associated with the
membrane or in a retrieval step of the carboxypeptidase
Y sorting pathway.
Length = 356
Score = 43.3 bits (102), Expect = 3e-04
Identities = 26/85 (30%), Positives = 44/85 (51%), Gaps = 8/85 (9%)
Query: 566 KTIRPSIKVWKTSDQ--DEIGSPR--IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE 621
+R + K T Q ++ S I N L + E +E ++EEE +E EE E+
Sbjct: 36 SELRDAEKERDTYKQYLSKLESQNVEISNYEAL----DSELDELKKEEERLLDELEELEK 91
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEE 646
E++++ E E +EE+E+ E EE +
Sbjct: 92 EDDDLDGELVELQEEKEQLENEELQ 116
Score = 37.2 bits (86), Expect = 0.026
Identities = 18/55 (32%), Positives = 33/55 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E + E E + E +E ++EEE + E EE E+E+++ + E E +EE+E++
Sbjct: 56 ESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQL 110
Score = 37.2 bits (86), Expect = 0.026
Identities = 19/56 (33%), Positives = 32/56 (57%), Gaps = 4/56 (7%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE----EEEEEEEEEEEEEEEEEEE 652
E E + E +E ++EEE +E++E E+E+ E E +EE+E+ E EE +
Sbjct: 61 EISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQ 116
Score = 34.1 bits (78), Expect = 0.22
Identities = 17/54 (31%), Positives = 31/54 (57%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E + E E + E +E ++EEE +E EE E+E+++ + E E +EE+ +
Sbjct: 56 ESQNVEISNYEALDSELDELKKEEERLLDELEELEKEDDDLDGELVELQEEKEQ 109
Score = 32.2 bits (73), Expect = 0.89
Identities = 13/56 (23%), Positives = 28/56 (50%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E ++ + E+E+++ + E E +EE+E+ E EE + E + + E+
Sbjct: 79 EERLLDELEELEKEDDDLDGELVELQEEKEQLENEELQYLREYNLFDRNNLQLEDN 134
Score = 30.6 bits (69), Expect = 3.0
Identities = 23/82 (28%), Positives = 38/82 (46%), Gaps = 7/82 (8%)
Query: 578 SDQDEIGSPRIENIIQ-LIRRGEREEEEEEEEEE------EEEEEEEEEEEEEEEVQEEE 630
S Q I P E L+ R + E + E+E + + E + E E + E
Sbjct: 13 SSQTNIDHPLCEECADILLERLDSELRDAEKERDTYKQYLSKLESQNVEISNYEALDSEL 72
Query: 631 EEEEEEEEEEEEEEEEEEEEEE 652
+E ++EEE +E EE E+E++
Sbjct: 73 DELKKEEERLLDELEELEKEDD 94
>gnl|CDD|218561 pfam05340, DUF740, Protein of unknown function (DUF740). This
family consists of several uncharacterized plant
proteins of unknown function.
Length = 565
Score = 43.5 bits (102), Expect = 3e-04
Identities = 21/41 (51%), Positives = 29/41 (70%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
EEEEE E EE+EE E+E +V +E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 42.3 bits (99), Expect = 8e-04
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
EEEEE E EE+EE E+E + V E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 41.6 bits (97), Expect = 0.001
Identities = 24/68 (35%), Positives = 36/68 (52%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
D++ + S I R + EEEEE E EE+EE E+E + +E+ EEEEE
Sbjct: 113 DEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEE 172
Query: 639 EEEEEEEE 646
EE + ++
Sbjct: 173 EELKTMKD 180
Score = 40.0 bits (93), Expect = 0.004
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
EEEEE E EE+EE E+E + +E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 39.6 bits (92), Expect = 0.005
Identities = 24/82 (29%), Positives = 38/82 (46%)
Query: 568 IRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ 627
+R +W D+ + I R+ + EEEEE E EE+EE E +
Sbjct: 99 VRSRSTLWSLFHDDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKE 158
Query: 628 EEEEEEEEEEEEEEEEEEEEEE 649
+ +E+ EEEEEEE + ++
Sbjct: 159 PGKVVDEKSEEEEEEELKTMKD 180
Score = 39.2 bits (91), Expect = 0.006
Identities = 19/41 (46%), Positives = 27/41 (65%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EEEEE E EE+EE +E + +E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 39.2 bits (91), Expect = 0.007
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EEEEE E EE+EE E+E + +E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 39.2 bits (91), Expect = 0.007
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
EEEEE E EE+EE E+E + +E EEEEEEE + ++ + E + ++ V+ GK
Sbjct: 141 EEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFIDLESQTKKPSVKDNGK 198
Score = 39.2 bits (91), Expect = 0.008
Identities = 19/41 (46%), Positives = 28/41 (68%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EEEEE E EE+EE ++E + +E+ EEEEEEE + ++
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKD 180
Score = 37.7 bits (87), Expect = 0.022
Identities = 21/45 (46%), Positives = 27/45 (60%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EEEEE EE+EE E+E + +E+ EEEEEE K+ I L
Sbjct: 140 LEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEELKTMKDFIDL 184
Score = 37.3 bits (86), Expect = 0.030
Identities = 20/61 (32%), Positives = 29/61 (47%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+++EE E + E + V + EEEEE E EE+EE E+E +V EE
Sbjct: 111 DDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEE 170
Query: 662 S 662
Sbjct: 171 E 171
Score = 34.6 bits (79), Expect = 0.18
Identities = 21/60 (35%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE-----EEEEEEEEEEE 650
E + E + + EEEE E EE+EE E+E +E+ EEEEEEE
Sbjct: 115 ENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEEEEEE 174
Score = 33.1 bits (75), Expect = 0.59
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE----------EEEEEEE 648
+ +EE E + E + ++ EEEEE E EE+EE +E+ EEE
Sbjct: 111 DDDEENLPSSIAPPEIDPEPRKPIVPDLVLEEEEEVEMEEDEEYYEKEPGKVVDEKSEEE 170
Query: 649 EEEE 652
EEEE
Sbjct: 171 EEEE 174
>gnl|CDD|224308 COG1390, NtpE, Archaeal/vacuolar-type H+-ATPase subunit E [Energy
production and conversion].
Length = 194
Score = 42.0 bits (99), Expect = 3e-04
Identities = 26/70 (37%), Positives = 34/70 (48%), Gaps = 2/70 (2%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEE--EEEEEVQEEEEEEEEEEEEEEEEEE 645
+E +I+ I R EE EE EE EE E+ +EE E EE EE + E+E E E +
Sbjct: 4 LEKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERERQRI 63
Query: 646 EEEEEEEVRG 655
E R
Sbjct: 64 ISSALLEARR 73
Score = 38.9 bits (91), Expect = 0.004
Identities = 22/56 (39%), Positives = 30/56 (53%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
E+ ++ E EEE EE+ EE EE E+ +EE + E EE EE +R KE
Sbjct: 5 EKLIKKILREAEEEAEEILEEAREEAEKIKEEAKREAEEAIEEILRKAEKEAERER 60
>gnl|CDD|235396 PRK05299, rpsB, 30S ribosomal protein S2; Provisional.
Length = 258
Score = 42.5 bits (101), Expect = 3e-04
Identities = 23/34 (67%), Positives = 23/34 (67%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
R R E EEEEEE EEEEEEEEEEE E E E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 40.9 bits (97), Expect = 0.001
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ E +EEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 40.9 bits (97), Expect = 0.001
Identities = 22/34 (64%), Positives = 23/34 (67%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
R+ E EEEEEE EEEEEEEEEE EE E E
Sbjct: 225 RQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 40.9 bits (97), Expect = 0.001
Identities = 22/33 (66%), Positives = 23/33 (69%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E EEEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 40.1 bits (95), Expect = 0.002
Identities = 23/38 (60%), Positives = 25/38 (65%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
I G + E EEEEEE EEEEEEEEEEE +E E E
Sbjct: 221 ILEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.8 bits (94), Expect = 0.003
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ E EE +EE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.8 bits (94), Expect = 0.003
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+ E EEEEEE EEEEEE +EEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.8 bits (94), Expect = 0.003
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+ E EEEEEE EEE +EEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.4 bits (93), Expect = 0.003
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ E +EEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.4 bits (93), Expect = 0.004
Identities = 21/33 (63%), Positives = 23/33 (69%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+ E EEEEEE +EEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.4 bits (93), Expect = 0.004
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+ E EEEEEE EEEEEEE +EE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.4 bits (93), Expect = 0.004
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ E EEEEEE EEEEEEEE +E EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.0 bits (92), Expect = 0.004
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+ E EEEEEE EEEEEEEEE + EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.0 bits (92), Expect = 0.005
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+ E EEEEEE EE +EEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.0 bits (92), Expect = 0.005
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+ E EEEEEE +EEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.0 bits (92), Expect = 0.005
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ E EEEEEE EEEEE +EEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 39.0 bits (92), Expect = 0.005
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ E EEEE + EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 38.6 bits (91), Expect = 0.006
Identities = 21/33 (63%), Positives = 22/33 (66%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+ E EEEEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 38.6 bits (91), Expect = 0.007
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ E EEEEEE EEEE +EEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 38.2 bits (90), Expect = 0.007
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ E E +EEE EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 37.8 bits (89), Expect = 0.010
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ E EEE +E EEEEEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 37.8 bits (89), Expect = 0.011
Identities = 20/33 (60%), Positives = 22/33 (66%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+ E EEEEEE E +EEEEEEEE EE E E
Sbjct: 226 QGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 37.5 bits (88), Expect = 0.016
Identities = 22/38 (57%), Positives = 25/38 (65%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
I++ + E EEEEEE EEEEEEEEEEE EE E
Sbjct: 221 ILEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.9 bits (84), Expect = 0.049
Identities = 21/37 (56%), Positives = 23/37 (62%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEE 624
+E + EEEEE EEEEEEEEEEE EE E E
Sbjct: 222 LEGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
Score = 35.1 bits (82), Expect = 0.080
Identities = 19/36 (52%), Positives = 22/36 (61%)
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E ++ E EEEEEE EEEEEEEEEE + E
Sbjct: 223 EGRQGRLAEAAEEEEEEAEEEEEEEEEEEAEEAEAE 258
>gnl|CDD|188306 TIGR03319, RNase_Y, ribonuclease Y. Members of this family are
RNase Y, an endoribonuclease. The member from Bacillus
subtilis, YmdA, has been shown to be involved in
turnover of yitJ riboswitch [Transcription, Degradation
of RNA].
Length = 514
Score = 43.4 bits (103), Expect = 4e-04
Identities = 26/75 (34%), Positives = 45/75 (60%), Gaps = 1/75 (1%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE-EEEEEEEEEEEEE 645
R + +L RR + EE + + E +++EE E++E+E+ +E+ +E+EEE EE E
Sbjct: 74 RRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKEKNLDEKEEELEELIAE 133
Query: 646 EEEEEEEVRGGGKEE 660
+ EE E + G +EE
Sbjct: 134 QREELERISGLTQEE 148
Score = 36.8 bits (86), Expect = 0.040
Identities = 20/66 (30%), Positives = 31/66 (46%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ G EE + EE ++E E ++E E +EE + E E E +E E + E R
Sbjct: 26 KLGSAEELAKRIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRL 85
Query: 656 GGKEEI 661
+EE
Sbjct: 86 LQREET 91
Score = 34.9 bits (81), Expect = 0.13
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 16/72 (22%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEV----QEE------EEEEEEEEEE------EEE 642
+E+ +E+EEE EE E+ EE E + QEE EE EEE E E E
Sbjct: 114 SNKEKNLDEKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIE 173
Query: 643 EEEEEEEEEEVR 654
EE +EE +++ +
Sbjct: 174 EEAKEEADKKAK 185
Score = 33.0 bits (76), Expect = 0.63
Identities = 16/55 (29%), Positives = 29/55 (52%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E + E E E +E E + E +Q EE + + E +++EE E++E+E+
Sbjct: 59 EVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKEL 113
Score = 32.6 bits (75), Expect = 0.86
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 589 ENIIQLIRRGEREE--EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E + + +EE + E E E +E E + E + + EE + + E +++EE
Sbjct: 46 ETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEEN 105
Query: 647 EEEEEE 652
E++E+
Sbjct: 106 LEKKEK 111
Score = 31.8 bits (73), Expect = 1.1
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + E E E +E E + E + EE + + E +++EE E++E+E +E
Sbjct: 60 VHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENLEKKEKELSNKE 117
Score = 31.0 bits (71), Expect = 2.5
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 593 QLIRRGEREEEEEEEEEEEE--EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++I ++E E ++E E EE + E E E++E E + E + EE + +
Sbjct: 36 RIIEEAKKEAETLKKEALLEAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRK 95
Query: 651 EE 652
E
Sbjct: 96 ME 97
Score = 30.7 bits (70), Expect = 2.9
Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 16/65 (24%)
Query: 599 EREEEEEEEEEEEEEEEEE------EE------EEEEEEVQEEE----EEEEEEEEEEEE 642
E+EEE EE E+ EE E EE EE EEE + E +E EEE +EE +
Sbjct: 122 EKEEELEELIAEQREELERISGLTQEEAKEILLEEVEEEARHEAAKLIKEIEEEAKEEAD 181
Query: 643 EEEEE 647
++ +E
Sbjct: 182 KKAKE 186
Score = 30.3 bits (69), Expect = 3.9
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E +EE + E E E +E E + E + EE + + E +++EE + K+E
Sbjct: 55 EAKEEVHKLRAELERELKERRNELQRLERRLLQREETLDRKMESLDKKEENL---EKKEK 111
Query: 662 SLH 664
L
Sbjct: 112 ELS 114
>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein.
Mitofilin controls mitochondrial cristae morphology.
Mitofilin is enriched in the narrow space between the
inner boundary and the outer membranes, where it forms a
homotypic interaction and assembles into a large
multimeric protein complex. The first 78 amino acids
contain a typical amino-terminal-cleavable mitochondrial
presequence rich in positive-charged and hydroxylated
residues and a membrane anchor domain. In addition, it
has three centrally located coiled coil domains.
Length = 493
Score = 43.1 bits (102), Expect = 4e-04
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 589 ENIIQLIRRGEREEEE--EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + +L E E E +E+ EE + EEE E + E++ E E E+EE
Sbjct: 177 KKLAELKAEEEEELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELR 236
Query: 647 EEEEEEVR 654
++ EE++R
Sbjct: 237 KKYEEKLR 244
Score = 41.9 bits (99), Expect = 9e-04
Identities = 26/86 (30%), Positives = 39/86 (45%), Gaps = 7/86 (8%)
Query: 572 IKVWKTSDQDEIGSPRI----ENIIQLIRRGE---REEEEEEEEEEEEEEEEEEEEEEEE 624
I K + + I E + QL ++ EEEEE E +E+ EE + EEE
Sbjct: 149 IDSIKEDNLKDDLESLIASAKEELDQLSKKLAELKAEEEEELERALKEKREELLSKLEEE 208
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ E +E E++ E E E+EE
Sbjct: 209 LLARLESKEAALEKQLRLEFEREKEE 234
Score = 38.1 bits (89), Expect = 0.013
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 7/75 (9%)
Query: 587 RIENII-----QLIRRGEREEEE--EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+E + +L+ + E E E +E E++ E E E+EE++++ EE+ +E E
Sbjct: 189 ELERALKEKREELLSKLEEELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELE 248
Query: 640 EEEEEEEEEEEEEVR 654
+ E E++ + E+
Sbjct: 249 RQAEAHEQKLKNELA 263
Score = 37.3 bits (87), Expect = 0.025
Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEE--EEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+L+ R E +E E++ E E E+EE + EE++++E E + E E++ + E +
Sbjct: 208 ELLARLESKEAALEKQLRLEFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAI 267
Query: 651 EEVR 654
E R
Sbjct: 268 ELQR 271
Score = 31.9 bits (73), Expect = 1.2
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE--EEEEEVR 654
E+EE ++ EE+ +E E + E E++++ E + E + E +E +E EEE R
Sbjct: 231 EKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIELQREFNKEIKEKVEEERNGR 288
Score = 29.6 bits (67), Expect = 5.9
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E E+EE ++ EE+ +E E + E +++ + E + E + E +E +E+V
Sbjct: 227 EFEREKEELRKKYEEKLRQELERQAEAHEQKLKNELALQAIELQREFNKEIKEKV 281
>gnl|CDD|215914 pfam00428, Ribosomal_60s, 60s Acidic ribosomal protein. This
family includes archaebacterial L12, eukaryotic P0, P1
and P2.
Length = 88
Score = 39.1 bits (92), Expect = 4e-04
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 632 EEEEEEEEEEEEEEEEEEEEEVRGGG 657
EEE++EEEEEEEE++ G G
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDDDMGFG 86
Score = 38.0 bits (89), Expect = 0.001
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 601 EEEEEEEEEEEEEEEEEEEEE 621
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 38.0 bits (89), Expect = 0.001
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 602 EEEEEEEEEEEEEEEEEEEEE 622
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 38.0 bits (89), Expect = 0.001
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 603 EEEEEEEEEEEEEEEEEEEEE 623
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 38.0 bits (89), Expect = 0.001
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 604 EEEEEEEEEEEEEEEEEEEEE 624
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 38.0 bits (89), Expect = 0.001
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 605 EEEEEEEEEEEEEEEEEEEEE 625
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 38.0 bits (89), Expect = 0.001
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 628 EEEEEEEEEEEEEEEEEEEEE 648
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 38.0 bits (89), Expect = 0.001
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 629 EEEEEEEEEEEEEEEEEEEEE 649
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 38.0 bits (89), Expect = 0.001
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 630 EEEEEEEEEEEEEEEEEEEEE 650
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 37.2 bits (87), Expect = 0.003
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 606 EEEEEEEEEEEEEEEEEEEEV 626
EEE++EEEEEEEE+
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 36.1 bits (84), Expect = 0.007
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 598 GEREEEEEEEEEEEEEEEEEE 618
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 35.7 bits (83), Expect = 0.008
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 622 EEEEVQEEEEEEEEEEEEEEE 642
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 34.9 bits (81), Expect = 0.014
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 624 EEVQEEEEEEEEEEEEEEEEE 644
EEE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 34.5 bits (80), Expect = 0.019
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 621 EEEEEVQEEEEEEEEEEEEEE 641
+EE++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 34.5 bits (80), Expect = 0.019
Identities = 10/21 (47%), Positives = 14/21 (66%)
Query: 618 EEEEEEEEVQEEEEEEEEEEE 638
EE ++EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 34.1 bits (79), Expect = 0.029
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 612 EEEEEEEEEEEEEEVQEEEEE 632
EEE++EEE +EEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 34.1 bits (79), Expect = 0.033
Identities = 11/21 (52%), Positives = 14/21 (66%)
Query: 617 EEEEEEEEEVQEEEEEEEEEE 637
EEE +EEEEEEEE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 33.4 bits (77), Expect = 0.058
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 611 EEEEEEEEEEEEEEEVQEEEE 631
EEE++EEEE +EE++
Sbjct: 61 AAAAAAEEEKKEEEEEEEEDD 81
Score = 33.0 bits (76), Expect = 0.071
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEE 635
EEE++EE EEEEEE++
Sbjct: 61 AAAAAAEEEKKEE--EEEEEEDD 81
Score = 33.0 bits (76), Expect = 0.071
Identities = 11/23 (47%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEE 636
EEE++E EEEEEEE++
Sbjct: 61 AAAAAAEEEKKE--EEEEEEEDD 81
>gnl|CDD|235401 PRK05306, infB, translation initiation factor IF-2; Validated.
Length = 746
Score = 43.3 bits (103), Expect = 5e-04
Identities = 21/53 (39%), Positives = 25/53 (47%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EEEE +EE + E EEE + E EE E EEE + E EE E
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAA 91
Score = 42.5 bits (101), Expect = 8e-04
Identities = 21/51 (41%), Positives = 25/51 (49%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EEEE +EE + E EEE + E EE E EEE + E EE E
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAA 89
Score = 41.4 bits (98), Expect = 0.002
Identities = 20/56 (35%), Positives = 25/56 (44%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EEEE +EE + E EEE + E +E E EEE + E EE E
Sbjct: 39 EEEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEA 94
Score = 41.0 bits (97), Expect = 0.002
Identities = 20/60 (33%), Positives = 25/60 (41%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EEE +EE + E EEE + E EE E EEE + E EE E +
Sbjct: 40 EEEARKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAARPA 99
Score = 40.6 bits (96), Expect = 0.003
Identities = 17/53 (32%), Positives = 21/53 (39%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+EE + E EEE + E EE E EE + E EE E E
Sbjct: 44 RKEEAKREAEEEAKAEAEEAAAAEAEEEAKAEAAAAAPAEEAAEAAAAAEAAA 96
>gnl|CDD|219761 pfam08243, SPT2, SPT2 chromatin protein. This family includes the
Saccharomyces cerevisiae protein SPT2 which is a
chromatin protein involved in transcriptional
regulation.
Length = 116
Score = 39.9 bits (93), Expect = 6e-04
Identities = 22/77 (28%), Positives = 34/77 (44%), Gaps = 4/77 (5%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+QDEI E I + +G + + +E++ + E E +Q+EE
Sbjct: 37 EEQDEIPYDSDE-IWAIFGKGRKRSYYDRYDEDDALDNMEATFME---IQKEERRSARMA 92
Query: 638 EEEEEEEEEEEEEEEVR 654
E+E E EEEEE R
Sbjct: 93 RLEDERELAREEEEEKR 109
Score = 32.2 bits (73), Expect = 0.23
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
E E ++EE E+E E+ EEEEE+ +
Sbjct: 75 EATFMEIQKEERRSARMARLEDERELAREEEEEKRK 110
Score = 30.2 bits (68), Expect = 1.1
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
E E ++EE E+E E +EEEE+ +
Sbjct: 75 EATFMEIQKEERRSARMARLEDERELAREEEEEKRK 110
Score = 29.9 bits (67), Expect = 1.9
Identities = 11/36 (30%), Positives = 16/36 (44%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E E ++EE E+E EEEEE+ +
Sbjct: 75 EATFMEIQKEERRSARMARLEDERELAREEEEEKRK 110
Score = 29.1 bits (65), Expect = 3.1
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 7/34 (20%)
Query: 598 GEREEEEEEE-------EEEEEEEEEEEEEEEEE 624
E ++EE E+E E EEEEE+ +
Sbjct: 77 TFMEIQKEERRSARMARLEDERELAREEEEEKRK 110
Score = 28.7 bits (64), Expect = 3.7
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEE 620
RR R E+E E EEEEE+ +
Sbjct: 86 RRSARMARLEDERELAREEEEEKRK 110
>gnl|CDD|205206 pfam13025, DUF3886, Protein of unknown function (DUF3886). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are approximately 90 amino acids in length.
There are two completely conserved L residues that may
be functionally important.
Length = 70
Score = 38.5 bits (90), Expect = 6e-04
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
++E + EEE+ EEEEE + EE +E E+ + EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 37.7 bits (88), Expect = 0.001
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
++E + EEE+ EEEEE + E ++E E+ + EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 37.3 bits (87), Expect = 0.001
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++E + EEE+ EEEEE + EE +E E+ + EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 36.9 bits (86), Expect = 0.002
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
E + EEE+ EEEEE + EE +E E+ EE E E
Sbjct: 28 ELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 36.9 bits (86), Expect = 0.002
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
++E + EEE+ EEEEE +EE +E E+ + EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 36.9 bits (86), Expect = 0.002
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
++E + EEE+ EEEEE + EE +E E + EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 36.9 bits (86), Expect = 0.002
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
++E + EEE+ EEEEE + EE + E+ + EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 36.2 bits (84), Expect = 0.004
Identities = 16/40 (40%), Positives = 24/40 (60%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++E + EEE+ EEEE + EE +E E+ + EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 36.2 bits (84), Expect = 0.004
Identities = 16/40 (40%), Positives = 25/40 (62%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++E + EEE+ EEEEE + +E +E E+ + EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 36.2 bits (84), Expect = 0.004
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
++E + EEE+ EEEEE ++ EE +E E+ + EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 35.8 bits (83), Expect = 0.005
Identities = 16/42 (38%), Positives = 26/42 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+++E + EEE+ EEEEE + EE +E ++ + EE E E
Sbjct: 24 AKKKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 35.4 bits (82), Expect = 0.008
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++E + EEE+ EEE + + EE +E E+ + EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 34.6 bits (80), Expect = 0.013
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++E + EEE+ EE +E + EE +E E+ + EE E E
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 34.6 bits (80), Expect = 0.013
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
+L E+ EEEEE + EE +E E+ + EE + E E
Sbjct: 28 ELKAEEEKREEEEEARKREERKEREKNKSFEELLNESE 65
Score = 30.4 bits (69), Expect = 0.49
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++E + EEE+ EEEEE + EE +E
Sbjct: 25 KKKELKAEEEKREEEEEARKREERKE 50
Score = 29.6 bits (67), Expect = 0.76
Identities = 12/28 (42%), Positives = 19/28 (67%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+++E + EEE+ EEEEE + EE + R
Sbjct: 24 AKKKELKAEEEKREEEEEARKREERKER 51
Score = 29.2 bits (66), Expect = 1.2
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 631 EEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
++E + EEE+ EEEEE + EE + K
Sbjct: 26 KKELKAEEEKREEEEEARKREERKEREKN 54
Score = 28.5 bits (64), Expect = 1.8
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+++ +++E + EEE+ EEEEE + EE
Sbjct: 20 AKLKAKKKELKAEEEKREEEEEARKREE 47
>gnl|CDD|130141 TIGR01069, mutS2, MutS2 family protein. Function of MutS2 is
unknown. It should not be considered a DNA mismatch
repair protein. It is likely a DNA mismatch binding
protein of unknown cellular function [DNA metabolism,
Other].
Length = 771
Score = 42.9 bits (101), Expect = 6e-04
Identities = 21/62 (33%), Positives = 39/62 (62%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E I LI + E+E E++ E E+ +E+E+ ++E+++E EE +E E ++ E E+E
Sbjct: 511 EEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEA 570
Query: 649 EE 650
+E
Sbjct: 571 QE 572
Score = 40.6 bits (95), Expect = 0.003
Identities = 24/92 (26%), Positives = 50/92 (54%), Gaps = 3/92 (3%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE---E 644
IE + L + E++ E E+ +E+E+ ++E E+E EE++E E ++ E E+E +E
Sbjct: 517 IEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELEKEAQEALKA 576
Query: 645 EEEEEEEEVRGGGKEEISLHFYVLYVLSKGKI 676
++E E +R +++I + + K+
Sbjct: 577 LKKEVESIIRELKEKKIHKAKEIKSIEDLVKL 608
Score = 31.7 bits (72), Expect = 1.7
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 7/64 (10%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEE-------EEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+EE E+ E+E E++ E E+E ++E E+E EE +E E ++ E E
Sbjct: 508 EFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLELE 567
Query: 651 EEVR 654
+E +
Sbjct: 568 KEAQ 571
Score = 30.9 bits (70), Expect = 3.0
Identities = 18/58 (31%), Positives = 32/58 (55%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E +EE E+ E+E E++ + E+ +E+E+ ++E E+E EE +E K E
Sbjct: 508 EFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKERERNKKLE 565
Score = 30.2 bits (68), Expect = 5.2
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 594 LIRRGEREEEEEEEEE----EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+I + + E +EE E+ E+E E++ E +++ +E+E+ ++E E+E EE +E
Sbjct: 498 IIEQAKTFYGEFKEEINVLIEKLSALEKELEQKNEHLEKLLKEQEKLKKELEQEMEELKE 557
Query: 650 EE 651
E
Sbjct: 558 RE 559
>gnl|CDD|204414 pfam10211, Ax_dynein_light, Axonemal dynein light chain. Axonemal
dynein light chain proteins play a dynamic role in
flagellar and cilia motility. Eukaryotic cilia and
flagella are complex organelles consisting of a core
structure, the axoneme, which is composed of nine
microtubule doublets forming a cylinder that surrounds a
pair of central singlet microtubules. This
ultra-structural arrangement seems to be one of the most
stable micro-tubular assemblies known and is responsible
for the flagellar and ciliary movement of a large number
of organisms ranging from protozoan to mammals. This
light chain interacts directly with the N-terminal half
of the heavy chains.
Length = 189
Score = 40.7 bits (96), Expect = 7e-04
Identities = 22/57 (38%), Positives = 36/57 (63%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
G R+ + E+ + E E+E ++ EEE+EE+++ E E + E E+ EEEE + EE R
Sbjct: 111 GMRKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKR 167
Score = 39.5 bits (93), Expect = 0.002
Identities = 23/61 (37%), Positives = 39/61 (63%), Gaps = 2/61 (3%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE--EE 652
+R+ + E+ + E E+E ++ EEE+EE E+ V E E + E E+ EEEE + EE+ +E
Sbjct: 112 MRKALQAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE 171
Query: 653 V 653
+
Sbjct: 172 I 172
Score = 36.0 bits (84), Expect = 0.027
Identities = 16/52 (30%), Positives = 29/52 (55%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+ +L + ++ EEE+EE E+ E E + E E+ +EE + EE+ +E
Sbjct: 120 QGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEERQIEEKRHADE 171
Score = 29.1 bits (66), Expect = 5.3
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 3/58 (5%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
Q E G +E I+ + + E E+ E E + E E+ EEEE ++ EE+ +E
Sbjct: 117 QAEQGKSELEQEIKKLEEEKEELEKRVAELEAKLEAIEKREEEE---RQIEEKRHADE 171
>gnl|CDD|219124 pfam06658, DUF1168, Protein of unknown function (DUF1168). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 142
Score = 40.0 bits (94), Expect = 7e-04
Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 27/96 (28%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE----------------------- 632
RR E E E +E+ ++E E+EE +++ EE + ++EE
Sbjct: 45 RRREYERLELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAK 104
Query: 633 ----EEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
+EE+E + EE +EEEE +E + +
Sbjct: 105 KGNKKEEKEGSKSSEESSDEEEEGEEDKQEEPVEIM 140
Score = 35.4 bits (82), Expect = 0.027
Identities = 22/91 (24%), Positives = 44/91 (48%), Gaps = 24/91 (26%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEE------------------------EEEEVQ 627
++L+ ++E E+EE +++ EE++ ++EE ++ +
Sbjct: 52 LELMDEKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEE 111
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+E + EE +EEEE EE+++EE V K
Sbjct: 112 KEGSKSSEESSDEEEEGEEDKQEEPVEIMEK 142
Score = 33.9 bits (78), Expect = 0.083
Identities = 22/86 (25%), Positives = 50/86 (58%), Gaps = 6/86 (6%)
Query: 573 KVWKTSDQDEIGSPRIENIIQLI------RRGEREEEEEEEEEEEEEEEEEEEEEEEEEV 626
+ WK +DE + E + +R +R++++++++++++ ++ ++EE+E
Sbjct: 57 EKWKKETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKKEEKEGSK 116
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE +EEEE EE+++EE E E+
Sbjct: 117 SSEESSDEEEEGEEDKQEEPVEIMEK 142
Score = 32.7 bits (75), Expect = 0.22
Identities = 22/92 (23%), Positives = 45/92 (48%), Gaps = 23/92 (25%)
Query: 587 RIENIIQLIRRGEREEEE-EEEEEEEEEEEEE---------------------EEEEEEE 624
R+E + + ++ E E+EE +++ EE++ ++EE ++ ++
Sbjct: 51 RLELMDEKWKK-ETEDEEFQQKREEKKRKDEEKTAKKRAKRQKKKQKKKKKKKAKKGNKK 109
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E +E + EE +EEEE EE+++EE
Sbjct: 110 EEKEGSKSSEESSDEEEEGEEDKQEEPVEIME 141
>gnl|CDD|202833 pfam03962, Mnd1, Mnd1 family. This family of proteins includes
MND1 from S. cerevisiae. The mnd1 protein forms a
complex with hop2 to promote homologous chromosome
pairing and meiotic double-strand break repair.
Length = 188
Score = 40.7 bits (96), Expect = 8e-04
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ E+ ++E EE ++ E + + E+ + EE EE E EE ++ E+E ++
Sbjct: 67 LKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121
Score = 40.7 bits (96), Expect = 0.001
Identities = 14/53 (26%), Positives = 32/53 (60%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E+ ++E EE ++ E + ++++ ++ EE EE E EE ++ E+E++
Sbjct: 68 KTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELK 120
Score = 37.6 bits (88), Expect = 0.008
Identities = 17/59 (28%), Positives = 32/59 (54%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
L + R E+ ++E EE ++ E + + E+ + EE EE E EE ++ E+E ++
Sbjct: 63 ALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121
Score = 37.2 bits (87), Expect = 0.012
Identities = 16/62 (25%), Positives = 37/62 (59%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
Q + + + E+ ++E EE ++ E + + E++++ EE EE E EE ++ E+E ++
Sbjct: 62 QALNKLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKK 121
Query: 653 VR 654
++
Sbjct: 122 LK 123
Score = 35.7 bits (83), Expect = 0.033
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
+ E+ ++E EE ++ + E + + E+ ++ EE EE E EE++ KE L
Sbjct: 68 KTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLK 123
Score = 35.3 bits (82), Expect = 0.051
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++E EE ++ E + + E+ ++ E EE E EE ++ E+E ++ + E
Sbjct: 75 KKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAE 125
Score = 34.9 bits (81), Expect = 0.072
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++E EE ++ E + + E+ ++ EE +E E EE ++ E+E ++ + E E+
Sbjct: 75 KKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAELEK 128
Score = 33.0 bits (76), Expect = 0.32
Identities = 15/66 (22%), Positives = 38/66 (57%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+++ ++ +++ E ++ E + + E+ ++ EE EE E EE ++ E+E ++ + E
Sbjct: 66 KLKTRLEKLKKELEELKQRIAELQAQIEKLKKGREETEERTELLEELKQLEKELKKLKAE 125
Query: 647 EEEEEE 652
E+ E+
Sbjct: 126 LEKYEK 131
Score = 28.7 bits (65), Expect = 7.7
Identities = 20/65 (30%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ I +L + E + ++ EE EE E EE ++ E+E+++ + E E+ E+ + E E+ +
Sbjct: 83 QRIAELQAQIE-KLKKGREETEERTELLEELKQLEKELKKLKAELEKYEKNDPERIEKLK 141
Query: 649 EEEEV 653
EE +V
Sbjct: 142 EETKV 146
>gnl|CDD|214395 CHL00204, ycf1, Ycf1; Provisional.
Length = 1832
Score = 42.4 bits (100), Expect = 8e-04
Identities = 24/68 (35%), Positives = 37/68 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
ER E EEE + E E E + ++E+E EE+ EE E+ ++ +E EE+R GK
Sbjct: 250 ERVESEEETDVEIETASETKGTKQEQEGSTEEDPSPSLFSEEREDPDKIDETEEIRVNGK 309
Query: 659 EEISLHFY 666
E+I +
Sbjct: 310 EKIKKDLF 317
Score = 29.7 bits (67), Expect = 7.8
Identities = 10/37 (27%), Positives = 25/37 (67%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ E + EE+ ++++++E+++EEE + EE+ R
Sbjct: 730 GKDAEFKISDSVEEKTKKKKKKEKKKEEEYKREEKAR 766
>gnl|CDD|224581 COG1667, COG1667, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 254
Score = 41.4 bits (97), Expect = 8e-04
Identities = 24/78 (30%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE----EEEEEEEEEEEEE 643
E I++L + E EEE E E EE + E EE+ E+ E EE E +E
Sbjct: 101 FEKILEL-NKDECVLSVPITEEEVENEMEELKSSEREELLEKYGIRVPEIEEIERILDEA 159
Query: 644 EEEEEEEEEVRGGGKEEI 661
+ EE+ +EE+
Sbjct: 160 VGSDYFSEEIEEPSREEL 177
Score = 40.2 bits (94), Expect = 0.002
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 6/71 (8%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEE------EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EEE E E EE + E EE E+ E E E +E + EE EE EE ++
Sbjct: 120 EEEVENEMEELKSSEREELLEKYGIRVPEIEEIERILDEAVGSDYFSEEIEEPSREELLK 179
Query: 655 GGGKEEISLHF 665
G +E ++
Sbjct: 180 KLGIKEPDENW 190
Score = 29.8 bits (67), Expect = 4.1
Identities = 21/75 (28%), Positives = 32/75 (42%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ +I + E +E+ E+ E ++E EEE E E EE + E EE
Sbjct: 78 ELLKVIDHDSFAVVDVYELDEDLFEKILELNKDECVLSVPITEEEVENEMEELKSSEREE 137
Query: 647 EEEEEEVRGGGKEEI 661
E+ +R EEI
Sbjct: 138 LLEKYGIRVPEIEEI 152
>gnl|CDD|221756 pfam12757, DUF3812, Protein of unknown function (DUF3812). This is
a family of fungal proteins whose function is not known.
Length = 126
Score = 39.6 bits (93), Expect = 8e-04
Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
++ D I R++ ++ I ER E + +EE++ +EEE + + EE + E E+++
Sbjct: 72 AEVDAIARSRVQPVLDEID--ERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 38.8 bits (91), Expect = 0.001
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+E E + +EE++ +EEE + Q EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 38.8 bits (91), Expect = 0.002
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+E E + +EE++ +EEE + + EE +E E E +
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKK 125
Score = 38.4 bits (90), Expect = 0.002
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+E E + +EE++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 38.4 bits (90), Expect = 0.002
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+E E + +EE+++ EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 37.7 bits (88), Expect = 0.003
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+E E + +EE++ +EEE ++ EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 36.9 bits (86), Expect = 0.006
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+E E + +EE++ +EEE + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 36.5 bits (85), Expect = 0.008
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+E E + +EE+ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 36.5 bits (85), Expect = 0.010
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
E E + +EE++ +EEE + + E +E E E+++
Sbjct: 91 ERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 36.5 bits (85), Expect = 0.010
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E E + EE++ +EEE + + EE +E E E++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKK 125
Score = 36.1 bits (84), Expect = 0.013
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+E E + + +++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.016
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+E E + +EE++ +EE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.7 bits (83), Expect = 0.018
Identities = 12/37 (32%), Positives = 23/37 (62%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+E E + +EE + +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.3 bits (82), Expect = 0.020
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E E + +EE++ +EE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.3 bits (82), Expect = 0.024
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E E + +E++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 35.0 bits (81), Expect = 0.035
Identities = 10/37 (27%), Positives = 23/37 (62%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+E E + +EE++ +E + + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 33.8 bits (78), Expect = 0.073
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+E E + +E ++ +EEE + + EE +E E E+++
Sbjct: 90 DERAEAQRARDEEKKLDEEEAKRQHEEAKEREREKKK 126
Score = 29.6 bits (67), Expect = 2.5
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E+ E E + +EE++ +EEE + + E
Sbjct: 87 DEIDERAEAQRARDEEKKLDEEEAKRQHE 115
>gnl|CDD|235548 PRK05657, PRK05657, RNA polymerase sigma factor RpoS; Validated.
Length = 325
Score = 41.9 bits (99), Expect = 8e-04
Identities = 10/48 (20%), Positives = 22/48 (45%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ + E+ + +E E +E+ + EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 41.1 bits (97), Expect = 0.001
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + E+ + +E EV +E+ EEE + + EEE +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGA 47
Score = 40.3 bits (95), Expect = 0.003
Identities = 10/46 (21%), Positives = 19/46 (41%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ + E+ + +E E E+ EEE + + EEE +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGA 47
Score = 39.9 bits (94), Expect = 0.003
Identities = 10/48 (20%), Positives = 21/48 (43%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ + E+ + +E E +E+ EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 39.6 bits (93), Expect = 0.004
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ + E+ + +E E + + EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 39.6 bits (93), Expect = 0.004
Identities = 10/44 (22%), Positives = 20/44 (45%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+ E+ + +E E +E+ EEE + + EEE + +
Sbjct: 6 HDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 38.8 bits (91), Expect = 0.007
Identities = 10/48 (20%), Positives = 20/48 (41%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ + E+ + +E E +E EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 38.4 bits (90), Expect = 0.010
Identities = 9/46 (19%), Positives = 19/46 (41%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ + E+ + +E +E+ EEE + + EEE +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGA 47
Score = 38.0 bits (89), Expect = 0.014
Identities = 9/48 (18%), Positives = 20/48 (41%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + E+ + +E E ++ EEE + + EEE + +
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 37.6 bits (88), Expect = 0.017
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E+ + +E E +E+ EEE + EEE + +
Sbjct: 5 VHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 37.2 bits (87), Expect = 0.025
Identities = 10/44 (22%), Positives = 18/44 (40%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E+ + +E E +E+ EEE + EEE + +
Sbjct: 6 HDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 36.5 bits (85), Expect = 0.036
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
+ + E+ + + E +E+ EEE + + EEE+ G + L
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVL 52
Score = 35.7 bits (83), Expect = 0.059
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
++ + E+ + +E E +E+ EEE + EEE + +
Sbjct: 3 LKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQ 49
Score = 35.3 bits (82), Expect = 0.088
Identities = 11/45 (24%), Positives = 21/45 (46%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ + E+ + +E E +E+ EEE + + EEE +G
Sbjct: 2 TLKVHDLNEDADFDENGVEVFDEKALVEEEPSDNDLAEEELLSQG 46
>gnl|CDD|177755 PLN00152, PLN00152, DNA-directed RNA polymerase; Provisional.
Length = 130
Score = 39.5 bits (92), Expect = 8e-04
Identities = 14/46 (30%), Positives = 24/46 (52%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ + E+E E E EE +E+ E +E + E E++EE+E
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEP 49
Score = 39.1 bits (91), Expect = 0.001
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E+E E E EE EE+ E +EV+ E E++EE+E +
Sbjct: 9 YEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
Score = 37.9 bits (88), Expect = 0.003
Identities = 15/51 (29%), Positives = 26/51 (50%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ + E+E E E EE EE+ + +E + E E++EE+E + R
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRPR 54
Score = 37.5 bits (87), Expect = 0.005
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ + E+E E E EE EE+ E +E + E E++EE+E +
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
Score = 36.4 bits (84), Expect = 0.012
Identities = 14/50 (28%), Positives = 24/50 (48%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + E+E E E EE EE+ +E + E E++EE+E +
Sbjct: 4 DMDMGYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
Score = 34.8 bits (80), Expect = 0.033
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E E E E EE EE+ E +E + E E++EE+E +
Sbjct: 9 YEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
Score = 34.5 bits (79), Expect = 0.047
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
G +E E E EE EE+ E +E + E E++EE+E +
Sbjct: 8 GYEDEPSEPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
Score = 28.7 bits (64), Expect = 5.0
Identities = 11/39 (28%), Positives = 18/39 (46%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
E EE EE+ E +E + E E+ +E+E +
Sbjct: 15 EPEIEEGAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
Score = 28.3 bits (63), Expect = 5.9
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 7/53 (13%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
+DE P IE G E+ E +E + E E++EE+E +
Sbjct: 8 GYEDEPSEPEIEE-------GAEEDSESNNNDEVKGSIGENEDKEEQEPVQRP 53
>gnl|CDD|202427 pfam02841, GBP_C, Guanylate-binding protein, C-terminal domain.
Transcription of the anti-viral guanylate-binding
protein (GBP) is induced by interferon-gamma during
macrophage induction. This family contains GBP1 and
GPB2, both GTPases capable of binding GTP, GDP and GMP.
Length = 297
Score = 41.5 bits (98), Expect = 9e-04
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
ER + E E E+E E+++EEE+ E QE +E ++ E+ E E E+ E
Sbjct: 209 ERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAE 262
Score = 41.1 bits (97), Expect = 0.001
Identities = 15/57 (26%), Positives = 29/57 (50%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+ E E + E E E+E E+++E ++ E +E +E ++ E+ E E +
Sbjct: 202 KEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREK 258
Score = 39.6 bits (93), Expect = 0.003
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E + E E E+E E+++EEE E +E +E ++ E+ E E E++
Sbjct: 205 AIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLL 260
Score = 39.6 bits (93), Expect = 0.004
Identities = 24/76 (31%), Positives = 39/76 (51%), Gaps = 12/76 (15%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE---------EEEEEEEEEEEE---EE 644
R + E E E+E E+++EEE+ E +E +E E E E+ E+E E
Sbjct: 210 RAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEH 269
Query: 645 EEEEEEEEVRGGGKEE 660
+ +E+EE ++ G K E
Sbjct: 270 KLQEQEELLKEGFKTE 285
Score = 37.7 bits (88), Expect = 0.014
Identities = 17/57 (29%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE---EEEEEEEEEEEEEEEE 652
+E+ E E + E E E+E E++ +EE+ E +E +E ++ E+ E E E
Sbjct: 201 AKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAERE 257
Score = 36.9 bits (86), Expect = 0.026
Identities = 14/47 (29%), Positives = 26/47 (55%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+E+ E E + E E ++E E+++EEE+ E +E +E V+
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVK 246
Score = 36.5 bits (85), Expect = 0.037
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+E+ E E + E E E + E+++EEE+ E +E +E
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQE 243
Score = 35.0 bits (81), Expect = 0.11
Identities = 14/44 (31%), Positives = 23/44 (52%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+E+ E E + E E QE E+++EEE+ E +E +E
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQE 243
Score = 34.2 bits (79), Expect = 0.16
Identities = 18/70 (25%), Positives = 35/70 (50%), Gaps = 3/70 (4%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE---EEEEEEEEE 652
+ E+++EEE+ E +E +E + E+ E E E+ E+E E + +E+EE
Sbjct: 217 EAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHKLQEQEE 276
Query: 653 VRGGGKEEIS 662
+ G + +
Sbjct: 277 LLKEGFKTEA 286
Score = 34.2 bits (79), Expect = 0.19
Identities = 14/51 (27%), Positives = 27/51 (52%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E+ E E + E E E+E ++++EEE+ E +E +E ++ E
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQERSYQEHVKQLIE 250
Score = 34.2 bits (79), Expect = 0.19
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 20/78 (25%)
Query: 597 RGEREEEEEEEEEEEE--------------------EEEEEEEEEEEEEVQEEEEEEEEE 636
E+E E+++EEE+ E E E+ E+E + E + +E+EE
Sbjct: 217 EAEQELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHKLQEQEE 276
Query: 637 EEEEEEEEEEEEEEEEVR 654
+E + E E ++E++
Sbjct: 277 LLKEGFKTEAESLQKEIQ 294
Score = 33.0 bits (76), Expect = 0.47
Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEE-----EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+L+R ++EEE+ E +E +E E+ E E E++ E+E E + +E+EE +E
Sbjct: 221 ELLREKQKEEEQMMEAQERSYQEHVKQLIEKMEAEREKLLAEQERMLEHKLQEQEELLKE 280
Query: 648 EEEEEVR 654
+ E
Sbjct: 281 GFKTEAE 287
Score = 32.3 bits (74), Expect = 0.67
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 2/50 (4%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEE--EEEEEEEEEEEEEEVQEEEEEEEEE 636
E++ QLI + E E E+ E+E E + +E+EE +E + E E ++E
Sbjct: 243 EHVKQLIEKMEAEREKLLAEQERMLEHKLQEQEELLKEGFKTEAESLQKE 292
Score = 31.1 bits (71), Expect = 1.7
Identities = 12/39 (30%), Positives = 20/39 (51%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+E+ E E + E E E+E E+++EEE +E
Sbjct: 200 TAKEKAIEAERAKAEAAEAEQELLREKQKEEEQMMEAQE 238
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function
unknown].
Length = 769
Score = 42.0 bits (98), Expect = 0.001
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 7/69 (10%)
Query: 599 EREEEEEEEEEEEEE-----EEEEEEEEEEEEVQEEEEE--EEEEEEEEEEEEEEEEEEE 651
E EEEE+ + +EE ++++ +E + EEV +EE ++ E EE EEEE +
Sbjct: 394 EDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLR 453
Query: 652 EVRGGGKEE 660
E R KE+
Sbjct: 454 EFRDMEKED 462
Score = 37.8 bits (87), Expect = 0.020
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 575 WKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
W +++E G E + +E + EE +EE ++ E EE+ EEEE +
Sbjct: 392 WAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQ 451
Query: 635 EEEEEEEEEEEEEEEEE 651
E + E+E+ E +E
Sbjct: 452 LREFRDMEKEDREFPDE 468
Score = 37.4 bits (86), Expect = 0.028
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E +EE ++ E EE EEEE Q E + E+E+ E +E E + E
Sbjct: 423 NEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAELQPSESAI 478
Score = 37.0 bits (85), Expect = 0.035
Identities = 15/56 (26%), Positives = 28/56 (50%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E+EEEE+ + +EE + +++ +E + EE +EE ++ E EE
Sbjct: 392 WAEDEEEEDGQCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEE 447
Score = 36.2 bits (83), Expect = 0.056
Identities = 18/52 (34%), Positives = 28/52 (53%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E + EE +EE ++ E EE EEEE + E + E+E+ E +E E
Sbjct: 419 KENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAE 470
Score = 36.2 bits (83), Expect = 0.059
Identities = 16/51 (31%), Positives = 26/51 (50%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+E + EE +EE ++ E E EEEE + E + E+E+ E +E
Sbjct: 419 KENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEA 469
Score = 35.8 bits (82), Expect = 0.090
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ +D++ S ++ + E +EE ++ E EE EEEE +++E + E+E
Sbjct: 402 QCNDEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKE 461
Query: 636 EEEEEEEEEEEEEE 649
+ E +E E + E
Sbjct: 462 DREFPDEAELQPSE 475
Score = 35.4 bits (81), Expect = 0.11
Identities = 14/54 (25%), Positives = 28/54 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ ++ +E + EE +EE ++ E + EEEE + E + E+E+ E +
Sbjct: 414 DDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPD 467
Score = 34.7 bits (79), Expect = 0.17
Identities = 17/65 (26%), Positives = 30/65 (46%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E ++++ +E + EE +EE + + E EE EEEE + E + E+
Sbjct: 407 ESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFP 466
Query: 659 EEISL 663
+E L
Sbjct: 467 DEAEL 471
Score = 34.7 bits (79), Expect = 0.17
Identities = 21/67 (31%), Positives = 31/67 (46%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EN + + E ++ E EE EEEE + E E+E+ E +E E + E E
Sbjct: 420 ENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDMEKEDREFPDEAELQPSESAIE 479
Query: 649 EEEEVRG 655
+E RG
Sbjct: 480 RYKEYRG 486
Score = 34.7 bits (79), Expect = 0.21
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E ++++ +E + EE +EE ++ E EE EEEE + E + E
Sbjct: 405 DEESTMSAIDDDDPKENDNEEVAGDEESAIDDNEGFEELSPEEEERQLREFRDME 459
>gnl|CDD|227492 COG5163, NOP7, Protein required for biogenesis of the 60S ribosomal
subunit [Translation, ribosomal structure and
biogenesis].
Length = 591
Score = 42.0 bits (98), Expect = 0.001
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EE + EE+ E+V+ E EE+++++EE + ++E E E +G
Sbjct: 459 RASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQG 512
Score = 40.1 bits (93), Expect = 0.003
Identities = 15/58 (25%), Positives = 28/58 (48%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
++ R EE + EE+ E+ E V EE+++++EE + ++E E E
Sbjct: 452 SVDSYDPRASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELE 509
Score = 40.1 bits (93), Expect = 0.004
Identities = 13/51 (25%), Positives = 24/51 (47%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE + EE+ E+ E EE+++++EE + ++E E E
Sbjct: 459 RASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELE 509
Score = 40.1 bits (93), Expect = 0.004
Identities = 12/54 (22%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE-EEEEEEEEEEEEEEEEEVRGGG 657
EE + EE+ ++ E EE+++++EE + ++E E+ G
Sbjct: 459 RASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQG 512
Score = 37.7 bits (87), Expect = 0.019
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
R EE + EE+ E+ + EE+++++EE + ++E E E
Sbjct: 459 RASLMTMEETQRHSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELE 509
Score = 35.8 bits (82), Expect = 0.082
Identities = 17/93 (18%), Positives = 44/93 (47%), Gaps = 7/93 (7%)
Query: 564 KLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE- 622
+ + P + + + N + +R E EE+++++EE + ++E E E
Sbjct: 452 SVDSYDPRASLMTMEETQRHSEEDLVNRFEDVRY-EHVAGEEDDDDDEELQAQKELELEA 510
Query: 623 -----EEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E + +++ + + ++ + +EEEEE++
Sbjct: 511 QGIKYSETSEADKDVNKSKNKKRKVDEEEEEKK 543
Score = 35.4 bits (81), Expect = 0.097
Identities = 16/65 (24%), Positives = 39/65 (60%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R E++ GE +++++EE + ++E E E + + E E +++ + + ++ + +EE
Sbjct: 479 RFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDVNKSKNKKRKVDEE 538
Query: 647 EEEEE 651
EEE++
Sbjct: 539 EEEKK 543
Score = 31.2 bits (70), Expect = 2.0
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 19/75 (25%)
Query: 599 EREEEEE---EEEEEEEEEEEEEEEEEEE-EVQEEEEEEEE---------------EEEE 639
EE+ E+ E EE+++++EE + Q+E E E + + +
Sbjct: 471 HSEEDLVNRFEDVRYEHVAGEEDDDDDEELQAQKELELEAQGIKYSETSEADKDVNKSKN 530
Query: 640 EEEEEEEEEEEEEVR 654
++ + +EEEEE++++
Sbjct: 531 KKRKVDEEEEEKKLK 545
>gnl|CDD|221179 pfam11711, Tim54, Inner membrane protein import complex subunit
Tim54. Mitochondrial function depends on the import of
hundreds of different proteins synthesised in the
cytosol. Protein import is a multi-step pathway which
includes the binding of precursor proteins to surface
receptors, translocation of the precursor across one or
both mitochondrial membranes, and folding and assembly
of the imported protein inside the mitochondrion. Most
precursor proteins carry amino-terminal targeting
signals, called pre-sequences, and are imported into
mitochondria via import complexes located in both the
outer and the inner membrane (IM). The IM complex, TIM,
is made up of at least two proteins which mediate
translocation of proteins into the matrix by removing
their signal peptide and another pair of proteins, Tim54
and Tim22, that insert the polytopic proteins, that
carry internal targetting information, into the inner
membrane.
Length = 377
Score = 41.6 bits (98), Expect = 0.001
Identities = 17/55 (30%), Positives = 20/55 (36%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
G + E E +E E E E E EE E EE E+ EEE
Sbjct: 193 GPLDPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENN 247
Score = 40.9 bits (96), Expect = 0.001
Identities = 19/62 (30%), Positives = 23/62 (37%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E +E E E E E + EE E EE E+ EEE + K
Sbjct: 199 EPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPPVPKPY 258
Query: 661 IS 662
IS
Sbjct: 259 IS 260
Score = 39.3 bits (92), Expect = 0.005
Identities = 17/51 (33%), Positives = 20/51 (39%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E E +E E E E E E EE E EE E+ EEE +
Sbjct: 199 EPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKP 249
Score = 37.4 bits (87), Expect = 0.019
Identities = 16/55 (29%), Positives = 21/55 (38%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E +E E E E E E +E E EE E+ EEE + + V
Sbjct: 200 PPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKPVKPPV 254
Score = 32.4 bits (74), Expect = 0.75
Identities = 14/47 (29%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 608 EEEEEEEEEEEEEEEEEEVQE-EEEEEEEEEEEEEEEEEEEEEEEEV 653
+ E E +E E EV+ E E EE E EE E+
Sbjct: 196 DPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAP 242
Score = 31.6 bits (72), Expect = 1.3
Identities = 11/47 (23%), Positives = 13/47 (27%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ E E +E E E E E E EE E
Sbjct: 196 DPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAP 242
Score = 31.2 bits (71), Expect = 1.8
Identities = 12/48 (25%), Positives = 14/48 (29%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ E E +E E E E E E EE E E
Sbjct: 196 DPPEPPEPTVDEAAPETEVEATPAAESPAEPAEETAETTPEETEDAPE 243
Score = 30.1 bits (68), Expect = 4.2
Identities = 13/40 (32%), Positives = 16/40 (40%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E E E E E EE E EE ++ EEE +
Sbjct: 210 PETEVEATPAAESPAEPAEETAETTPEETEDAPEEENNKP 249
>gnl|CDD|235302 PRK04456, PRK04456, acetyl-CoA decarbonylase/synthase complex
subunit beta; Reviewed.
Length = 463
Score = 41.6 bits (98), Expect = 0.001
Identities = 27/63 (42%), Positives = 38/63 (60%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + + I R++ EE+ ++ EE ++ +E+E V E EEEEEEEEEEEEEEE
Sbjct: 361 ERVKEFIPEELRDKIATEEDVKDIEELKKFLKEKEHPVVERWAAEEEEEEEEEEEEEEEP 420
Query: 649 EEE 651
E
Sbjct: 421 VAE 423
Score = 41.2 bits (97), Expect = 0.001
Identities = 19/32 (59%), Positives = 20/32 (62%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
ER EEEEEEEEEEEEEEE E + E
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 40.8 bits (96), Expect = 0.002
Identities = 23/49 (46%), Positives = 32/49 (65%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE+ ++ EE ++ +E+E V+ EEEEEEEEEEEEEEE E +
Sbjct: 378 EEDVKDIEELKKFLKEKEHPVVERWAAEEEEEEEEEEEEEEEPVAEVMM 426
Score = 40.4 bits (95), Expect = 0.003
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
EEEEEEEEEEEEEEE E + E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 40.1 bits (94), Expect = 0.004
Identities = 19/32 (59%), Positives = 20/32 (62%)
Query: 632 EEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EEEEEEEEEEEEEEE EV E+ L
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQL 434
Score = 38.5 bits (90), Expect = 0.009
Identities = 17/32 (53%), Positives = 17/32 (53%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E EEEEEEEEEEEEEEE E
Sbjct: 400 ERWAAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 38.1 bits (89), Expect = 0.013
Identities = 17/29 (58%), Positives = 18/29 (62%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
EEEEEEEEEEEEEEE E + E
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPE 431
Score = 37.7 bits (88), Expect = 0.021
Identities = 17/27 (62%), Positives = 18/27 (66%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEE 621
+ R EEEEEEEEEEEEEEE E
Sbjct: 399 VERWAAEEEEEEEEEEEEEEEPVAEVM 425
Score = 37.0 bits (86), Expect = 0.028
Identities = 19/42 (45%), Positives = 24/42 (57%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
IE + + ++ E E EEEEEEEEEEEEEEE +
Sbjct: 384 IEELKKFLKEKEHPVVERWAAEEEEEEEEEEEEEEEPVAEVM 425
Score = 36.6 bits (85), Expect = 0.046
Identities = 18/42 (42%), Positives = 22/42 (52%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EE +EEEEEEEEEEE E E ++ G +I L
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQLPASGGIKIIL 444
Score = 35.4 bits (82), Expect = 0.098
Identities = 18/39 (46%), Positives = 20/39 (51%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
EEEE +EEEEEEEEE E E + GG K
Sbjct: 403 AAEEEEEEEEEEEEEEEPVAEVMMMPAPEMQLPASGGIK 441
Score = 34.7 bits (80), Expect = 0.18
Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ 627
E P +E E EEEEEEEEEEEEE E E+Q
Sbjct: 393 EKEHPVVERWAA-----EEEEEEEEEEEEEEEPVAEVMMMPAPEMQ 433
>gnl|CDD|184538 PRK14149, PRK14149, heat shock protein GrpE; Provisional.
Length = 191
Score = 40.2 bits (94), Expect = 0.001
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 4/58 (6%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE----EEEEEEVR 654
E +E + ++E E EE+ +E Q EE++E E+E E +E+ E E E+ +R
Sbjct: 4 EHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMHEKYLR 61
Score = 39.5 bits (92), Expect = 0.002
Identities = 15/50 (30%), Positives = 32/50 (64%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++E +E + ++E E EE+ +E++ EE++E E+E E +E+ E++
Sbjct: 2 KDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELK 51
Score = 39.5 bits (92), Expect = 0.002
Identities = 16/55 (29%), Positives = 33/55 (60%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++E +E + ++E E EE+ + Q+ EE++E E+E E +E+ E + +E+
Sbjct: 2 KDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMH 56
Score = 34.1 bits (78), Expect = 0.12
Identities = 12/45 (26%), Positives = 27/45 (60%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++E +E + + ++E E EE+ +E++ EE++E + G +E
Sbjct: 2 KDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKE 46
Score = 34.1 bits (78), Expect = 0.12
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E + ++E E EE+ +E++ EE+ + E+E E +E+ E + +E E+
Sbjct: 8 EHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKYKEMHEK 58
Score = 34.1 bits (78), Expect = 0.13
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
++E +E + Q+E E EE+ +E++ EE++E E G KE+ L +
Sbjct: 2 KDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKY 52
Score = 28.3 bits (63), Expect = 9.8
Identities = 13/51 (25%), Positives = 26/51 (50%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYVLY 669
++E +E ++E E EE+ +E++ EE++ + EI F + Y
Sbjct: 2 KDEHNQEHDHLSQKEPESEEKACACKEQQGEEKQEASEKEGEIKEDFELKY 52
>gnl|CDD|218576 pfam05395, DARPP-32, Protein phosphatase inhibitor 1/DARPP-32.
This family consists of several mammalian protein
phosphatase inhibitor 1 (IPP-1) and dopamine- and
cAMP-regulated neuronal phosphoprotein (DARPP-32)
proteins. Protein phosphatase inhibitor-1 is involved in
signal transduction and is an endogenous inhibitor of
protein phosphatase-1. It has been demonstrated that
DARPP-32, if phosphorylated, can inhibit
protein-phosphatase-1. DARPP-32 has a key role in many
neurotransmitter pathways throughout the brain and has
been shown to be involved in controlling receptors, ion
channels and other physiological factors including the
brain's response to drugs of abuse, such as cocaine,
opiates and nicotine. DARPP-32 is reciprocally regulated
by the two neurotransmitters that are most often
implicated in schizophrenia - dopamine and glutamate.
Dopamine activates DARPP-32 through the D1 receptor
pathway and disables DARPP-32 through the D2 receptor.
Glutamate, acting through the N-methyl-d-aspartate
receptor, renders DARPP-32 inactive. A mutant form of
DARPP-32 has been linked with gastric cancers.
Length = 170
Score = 39.9 bits (93), Expect = 0.001
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE + EEE+E + +E E E E ++ EE ++ + EV
Sbjct: 95 GSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEV 145
Score = 39.9 bits (93), Expect = 0.001
Identities = 13/52 (25%), Positives = 22/52 (42%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
EE + EEE+E + +E E E E ++ EE ++ + G
Sbjct: 95 GSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEVG 146
Score = 39.1 bits (91), Expect = 0.002
Identities = 14/60 (23%), Positives = 26/60 (43%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+Q I + + EE + EEE+E + +E E E E ++ EE ++ +
Sbjct: 83 LQRIVESHLQSQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQ 142
Score = 36.0 bits (83), Expect = 0.022
Identities = 12/53 (22%), Positives = 23/53 (43%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ EE + EEE+E + +E + E E ++ EE ++ + E
Sbjct: 92 QSQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSE 144
Score = 36.0 bits (83), Expect = 0.026
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ EE + EEE+E + +E E E E ++ EE ++ + E
Sbjct: 93 SQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSE 144
Score = 35.3 bits (81), Expect = 0.043
Identities = 13/58 (22%), Positives = 26/58 (44%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+E+ +Q E + EEE+E + +E E E + ++ EE ++ + E
Sbjct: 87 VESHLQSQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSE 144
Score = 34.5 bits (79), Expect = 0.074
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E E E ++ EE ++ + EV E E E+E + EE
Sbjct: 119 TGETESTEAQDSEEPGSCPTQDAQSEVGLEGPWHRTAELSGPEQEGDSEE 168
Score = 34.5 bits (79), Expect = 0.076
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
EE + EEE+E + E E E E ++ EE +
Sbjct: 95 GSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSE 144
Score = 34.5 bits (79), Expect = 0.094
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
L +G EE + EEE+E + +E E E ++ EE ++ + E
Sbjct: 91 LQSQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSE 144
Score = 32.9 bits (75), Expect = 0.25
Identities = 13/50 (26%), Positives = 20/50 (40%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EE + EEE+E + +E E E E ++ EE + E
Sbjct: 95 GSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSE 144
Score = 32.9 bits (75), Expect = 0.26
Identities = 14/53 (26%), Positives = 21/53 (39%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EE + EEE+E +E E E E ++ EE + E+ L
Sbjct: 95 GSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEVGL 147
Score = 31.8 bits (72), Expect = 0.67
Identities = 12/50 (24%), Positives = 18/50 (36%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E E ++ EE ++ E E E E+E + EE
Sbjct: 119 TGETESTEAQDSEEPGSCPTQDAQSEVGLEGPWHRTAELSGPEQEGDSEE 168
Score = 31.4 bits (71), Expect = 0.85
Identities = 13/76 (17%), Positives = 25/76 (32%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+E + E+ + E E E ++ EE ++ + + E
Sbjct: 93 SQGSLEENQASEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEVGLEGPWH 152
Query: 636 EEEEEEEEEEEEEEEE 651
E E+E + EE
Sbjct: 153 RTAELSGPEQEGDSEE 168
Score = 31.4 bits (71), Expect = 0.98
Identities = 11/58 (18%), Positives = 19/58 (32%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ +E E E E ++ EE ++ + E E E E+E
Sbjct: 109 LDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEVGLEGPWHRTAELSGPEQEGDS 166
Score = 28.3 bits (63), Expect = 8.5
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 599 EREEEEEEEEEE----EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE+E + +E E E E ++ EE ++ + E E E +
Sbjct: 103 SEEEDELDSPDELGYPTGETESTEAQDSEEPGSCPTQDAQSEVGLEGPWHRTAELSGPEQ 162
Query: 655 GGGKEE 660
G EE
Sbjct: 163 EGDSEE 168
>gnl|CDD|204032 pfam08703, PLC-beta_C, PLC-beta C terminal. This domain
corresponds to the alpha helical C terminal domain of
phospholipase C beta.
Length = 181
Score = 40.2 bits (94), Expect = 0.001
Identities = 25/104 (24%), Positives = 52/104 (50%), Gaps = 9/104 (8%)
Query: 562 TNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE 621
+++ + K + ++ EI I+ ++Q I+R EE ++ +E+ EE++ E
Sbjct: 77 LERIQEAKTKEKHAQEREKTEINRSHIQEVVQSIKR------LEEAQKRRQEKLEEKQAE 130
Query: 622 EEEEVQEEE---EEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
+++QEEE + E E E + + +E +E ++ KE S
Sbjct: 131 ILQQIQEEEPKLQAEATAEYEAKLKRLPQEVQEYLQECRKEGSS 174
>gnl|CDD|238827 cd01650, RT_nLTR_like, RT_nLTR: Non-LTR (long terminal repeat)
retrotransposon and non-LTR retrovirus reverse
transcriptase (RT). This subfamily contains both non-LTR
retrotransposons and non-LTR retrovirus RTs. RTs
catalyze the conversion of single-stranded RNA into
double-stranded DNA for integration into host
chromosomes. RT is a multifunctional enzyme with
RNA-directed DNA polymerase, DNA directed DNA polymerase
and ribonuclease hybrid (RNase H) activities.
Length = 220
Score = 40.4 bits (95), Expect = 0.001
Identities = 23/80 (28%), Positives = 39/80 (48%), Gaps = 12/80 (15%)
Query: 36 DLLII--GRSKDLDLLLQRFQHTLDEIHKWSDLNGTIFSTDPGKSVCIDFNRLRNSRSPA 93
D+++ G+S+ L LLQR Q WS +G + P KS + + R
Sbjct: 150 DIVLFSEGKSRKLQELLQRLQE-------WSKESGLKIN--PSKSKVMLIGN-KKKRLKD 199
Query: 94 LSYNGIQLKFVTSTKFLGLT 113
++ NG ++ V + K+LG+T
Sbjct: 200 ITLNGTPIEAVETFKYLGVT 219
>gnl|CDD|227615 COG5296, COG5296, Transcription factor involved in TATA site
selection and in elongation by RNA polymerase II
[Transcription].
Length = 521
Score = 41.6 bits (97), Expect = 0.001
Identities = 17/63 (26%), Positives = 30/63 (47%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+++L + EREE E E + ++ +E EE E +EE EE E+ ++
Sbjct: 148 LLELKKTREREERLYSERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDISRTDDF 207
Query: 651 EEV 653
E+
Sbjct: 208 AEL 210
Score = 36.2 bits (83), Expect = 0.061
Identities = 14/55 (25%), Positives = 24/55 (43%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
RE EE E E + ++ +E EE ++ +EE EE E+ ++
Sbjct: 155 REREERLYSERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDISRTDDFAE 209
Score = 35.8 bits (82), Expect = 0.080
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 3/68 (4%)
Query: 596 RRGEREEEEEEEEEEEEE---EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
RR R E EE+++ E ++ E EE E E + ++ +E EE E+ +EE
Sbjct: 129 RRSTRYEPLTSAAEEKKKKLLELKKTREREERLYSERHIELQRFKDYKELEESEQGLQEE 188
Query: 653 VRGGGKEE 660
EE
Sbjct: 189 YTPSYAEE 196
Score = 32.7 bits (74), Expect = 0.72
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
E I+L R + +E EE E+ +EE EE E++ ++ E
Sbjct: 164 ERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDISRTDDFAE 209
Score = 31.9 bits (72), Expect = 1.1
Identities = 16/71 (22%), Positives = 30/71 (42%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
++++ E ++ E EE E E + ++ +E EE E+ +EE EE V
Sbjct: 143 EKKKKLLELKKTREREERLYSERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDIS 202
Query: 658 KEEISLHFYVL 668
+ + Y
Sbjct: 203 RTDDFAELYDF 213
Score = 31.9 bits (72), Expect = 1.1
Identities = 15/59 (25%), Positives = 27/59 (45%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++ + E ++ E EE E E + + +E EE E+ +EE EE E++
Sbjct: 143 EKKKKLLELKKTREREERLYSERHIELQRFKDYKELEESEQGLQEEYTPSYAEEAVEDI 201
>gnl|CDD|235316 PRK04863, mukB, cell division protein MukB; Provisional.
Length = 1486
Score = 41.9 bits (99), Expect = 0.001
Identities = 22/57 (38%), Positives = 35/57 (61%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
L++ R++E+ E + + EE EE EE+ E V+E +E++EE E E EEE +E
Sbjct: 338 NLVQTALRQQEKIERYQADLEELEERLEEQNEVVEEADEQQEENEARAEAAEEEVDE 394
Score = 36.1 bits (84), Expect = 0.067
Identities = 12/61 (19%), Positives = 26/61 (42%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+L+ + + ++E+E E+ +EE E E + E E E ++ E+ +
Sbjct: 534 RAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQA 593
Query: 650 E 650
Sbjct: 594 R 594
Score = 35.7 bits (83), Expect = 0.11
Identities = 13/57 (22%), Positives = 26/57 (45%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ +R + ++E+E E+ +EE E E E V E E ++ E+ + +
Sbjct: 541 EFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQR 597
Score = 34.2 bits (79), Expect = 0.32
Identities = 12/52 (23%), Positives = 22/52 (42%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++E+E E+ +EE E E E E E ++ E+ + + R
Sbjct: 550 LDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLEQLQARIQRLAAR 601
Score = 31.5 bits (72), Expect = 2.2
Identities = 14/57 (24%), Positives = 26/57 (45%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+R ER E + + ++E+E E+ +EE++ E E E E ++ E
Sbjct: 533 QRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMALRQQLE 589
Score = 29.9 bits (68), Expect = 6.1
Identities = 13/61 (21%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE-EEEEEEEEEEEEEV 653
+ + R+++ E E + + ++E+E+++ +EE E E E E E +
Sbjct: 525 LEQRLRQQQRAERLLAEFCKRLGKNLDDEDELEQLQEELEARLESLSESVSEARERRMAL 584
Query: 654 R 654
R
Sbjct: 585 R 585
Score = 29.5 bits (67), Expect = 8.5
Identities = 19/79 (24%), Positives = 29/79 (36%), Gaps = 15/79 (18%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE---------------EEEEEEEEEEEE 641
R + E+ E E E E E + E + +E+ E + + E
Sbjct: 299 RRQLAAEQYRLVEMARELAELNEAESDLEQDYQAASDHLNLVQTALRQQEKIERYQADLE 358
Query: 642 EEEEEEEEEEEVRGGGKEE 660
E EE EE+ EV E+
Sbjct: 359 ELEERLEEQNEVVEEADEQ 377
>gnl|CDD|218328 pfam04921, XAP5, XAP5, circadian clock regulator. This protein is
found in a wide range of eukaryotes. It is a nuclear
protein and is suggested to be DNA binding. In plants,
this family is essential for correct circadian clock
functioning by acting as a light-quality regulator
coordinating the activities of blue and red light
signalling pathways during plant growth - inhibiting
growth in red light but promoting growth in blue light.
Length = 233
Score = 40.4 bits (95), Expect = 0.001
Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 26/87 (29%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEE-----------------------EEEEEEEEE 638
+++EEE+E+E E+E++ +E E E EE+E E
Sbjct: 14 GDDDEEEDEDEGEDEKKVPKESSEPDEANVNPNKKKIGKNPSVDTSFLPDKAREEKEAEL 73
Query: 639 EEEEEEEEEEEEEEVRGGGKEEISLHF 665
EE EE +++E V+ EEI + F
Sbjct: 74 REELREEFLKKQEAVKE---EEIEITF 97
>gnl|CDD|177433 PHA02608, 67, prohead core protein; Provisional.
Length = 80
Score = 37.5 bits (87), Expect = 0.002
Identities = 7/35 (20%), Positives = 31/35 (88%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
E EE E+++++E++++++++++ +++++++E++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 37.5 bits (87), Expect = 0.002
Identities = 7/35 (20%), Positives = 31/35 (88%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E EE E+++++E+++++++++++ ++++++E++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 37.5 bits (87), Expect = 0.002
Identities = 13/60 (21%), Positives = 39/60 (65%), Gaps = 4/60 (6%)
Query: 581 DEIGSPRIENIIQ----LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
I R E +I+ I R E EE E+++++E++++++++++++ +++++E++E
Sbjct: 21 ASIMEARTEALIEEEKVEIARSVMIEGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 37.1 bits (86), Expect = 0.002
Identities = 11/49 (22%), Positives = 36/49 (73%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EEE+ E E EE E+++++E +++++++++++++++++E++E
Sbjct: 32 IEEEKVEIARSVMIEGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 36.3 bits (84), Expect = 0.004
Identities = 10/59 (16%), Positives = 38/59 (64%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+E + + E+ E E EE E+++++E++++ +++++++++++++E++E
Sbjct: 22 SIMEARTEALIEEEKVEIARSVMIEGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 35.1 bits (81), Expect = 0.010
Identities = 7/35 (20%), Positives = 31/35 (88%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EE E++ +E+++++++++++++++++++E++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 34.8 bits (80), Expect = 0.014
Identities = 6/35 (17%), Positives = 31/35 (88%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E EE E+++++ ++++++++++++++++++E++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 34.4 bits (79), Expect = 0.020
Identities = 7/35 (20%), Positives = 31/35 (88%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E EE E+++ E+++++++++++++++++++E++E
Sbjct: 46 EGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDDE 80
Score = 33.6 bits (77), Expect = 0.044
Identities = 17/73 (23%), Positives = 42/73 (57%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+E++I+ I+ G+ E ++E E E EEE+ E+ E EE E+++++E+++
Sbjct: 1 MEDLIEAIKSGDLVEAKKEFASIMEARTEALIEEEKVEIARSVMIEGEEPEDDDDDEDDD 60
Query: 648 EEEEEVRGGGKEE 660
+++++ ++
Sbjct: 61 DDDDKDDKDDDDD 73
Score = 32.8 bits (75), Expect = 0.067
Identities = 12/54 (22%), Positives = 37/54 (68%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R E EEE+ E E EE E+ ++E+++++++++++++++++++E++
Sbjct: 26 ARTEALIEEEKVEIARSVMIEGEEPEDDDDDEDDDDDDDKDDKDDDDDDDDEDD 79
>gnl|CDD|218637 pfam05558, DREPP, DREPP plasma membrane polypeptide. This family
contains several plant plasma membrane proteins termed
DREPPs as they are developmentally regulated plasma
membrane polypeptides.
Length = 201
Score = 40.0 bits (93), Expect = 0.002
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 8/60 (13%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE--------EEEEEEEEEEEEEEV 653
EE++ EEE E E++ +E+E+ EEE++EEE + E + EE +
Sbjct: 132 EEKKPEEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAP 191
Score = 38.9 bits (90), Expect = 0.004
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE++ EEE E E++ V+E+E EEE++EEE + EE
Sbjct: 132 EEKKPEEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEE 185
Score = 37.3 bits (86), Expect = 0.013
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E++ +E+E EEE++EEE V + E + EE +
Sbjct: 144 ETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAPA 192
Score = 37.0 bits (85), Expect = 0.016
Identities = 17/66 (25%), Positives = 29/66 (43%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + I ++ EEE E E++ +E+E EE ++EEE + E +
Sbjct: 124 EKVSTFIVEEKKPEEEAPAAETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKV 183
Query: 649 EEEEVR 654
EE +
Sbjct: 184 EETPAK 189
Score = 37.0 bits (85), Expect = 0.017
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E E++ +E+E EEE++EEE + E + EE +
Sbjct: 144 ETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAPA 192
Score = 36.2 bits (83), Expect = 0.026
Identities = 13/49 (26%), Positives = 22/49 (44%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E++ +E+E EEE++EEE + E + EE +
Sbjct: 144 ETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAPA 192
Score = 35.8 bits (82), Expect = 0.038
Identities = 12/49 (24%), Positives = 21/49 (42%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E++ +E+E EEE++EE + E + EE +
Sbjct: 144 ETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAPA 192
Score = 35.4 bits (81), Expect = 0.054
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E++ +E+E EEE++EEE + E + EE + E +
Sbjct: 146 EKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAPAAPAAEPQ 199
Score = 33.9 bits (77), Expect = 0.15
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E++ +E+E EEE++EEE + E + EE + E
Sbjct: 144 ETEKKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAPAAPAAE 197
Score = 33.9 bits (77), Expect = 0.18
Identities = 12/54 (22%), Positives = 22/54 (40%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ +E+E EEE++EEE + E + EE + E ++
Sbjct: 147 KKPAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAPAAPAAEPQK 200
Score = 33.1 bits (75), Expect = 0.35
Identities = 12/52 (23%), Positives = 21/52 (40%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E+E EEE++EEE + E + EE + E ++
Sbjct: 149 PAVKEKEIVVEEEKKEEEAVPVAAAPSTKAPETKVEETPAKAPAAPAAEPQK 200
>gnl|CDD|221733 pfam12720, DUF3807, Protein of unknown function (DUF3807). This is
a family of conserved fungal proteins of unknown
function.
Length = 169
Score = 39.3 bits (92), Expect = 0.002
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 8/81 (9%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE- 650
I + R +EE E EEE E + + E + +E E++ ++ + ++E
Sbjct: 62 IHALLRERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRKSCRDKERK 121
Query: 651 -------EEVRGGGKEEISLH 664
K + SL
Sbjct: 122 SAKDPRGGTQDVVDKSQASLD 142
Score = 32.0 bits (73), Expect = 0.61
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
I++ R E E E +EE E EEE E + E + +E E++ ++ +
Sbjct: 54 IEIFRHSEIHALLRERELKEEAEAEEEGEVDASPDAGAVAGESSADRKEAEQQGAAQKRK 113
Query: 652 EVRGG 656
R
Sbjct: 114 SCRDK 118
>gnl|CDD|111875 pfam03032, Brevenin, Brevenin/esculentin/gaegurin/rugosin family.
This family contains a number of defence peptides
secreted from the skin of amphibians, including the
opiate-like dermorphins and deltorphins, and the
antimicrobial dermoseptins and temporins. The alignment
for this family includes the signal peptide.
Length = 46
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEE 624
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEE 625
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEE 651
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEE 652
EEE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 36.2 bits (84), Expect = 0.002
Identities = 15/25 (60%), Positives = 19/25 (76%)
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEVR 654
EEE+ E+EEE E+EEE EE+ E R
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVKR 46
Score = 36.2 bits (84), Expect = 0.002
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEE 631
EEE+ E+EEE E+EEE E Q E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 35.4 bits (82), Expect = 0.004
Identities = 15/23 (65%), Positives = 19/23 (82%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEV 626
EEE+ E+EEE E+EEE EE+ EV
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEV 44
Score = 35.0 bits (81), Expect = 0.005
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEE 634
EEE+ E+EEE E+EE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 34.6 bits (80), Expect = 0.007
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEE 629
EEE+ E+EEE E+EEE EE+ + +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 34.2 bits (79), Expect = 0.009
Identities = 14/24 (58%), Positives = 19/24 (79%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEE 646
EEE +E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 34.2 bits (79), Expect = 0.009
Identities = 12/22 (54%), Positives = 17/22 (77%)
Query: 599 EREEEEEEEEEEEEEEEEEEEE 620
E+ E+EEE E+EEE EE+ E +
Sbjct: 24 EKREDEEENEDEEEGEEQSEVK 45
Score = 34.2 bits (79), Expect = 0.010
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEE 636
EEE+ E+EEE E+ +E EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 34.2 bits (79), Expect = 0.010
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEE 650
+EE+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 33.9 bits (78), Expect = 0.014
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEE 633
EEE+ E+EEE E+EEE +E+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 33.9 bits (78), Expect = 0.015
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEE 622
E E+ E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 33.9 bits (78), Expect = 0.015
Identities = 14/24 (58%), Positives = 18/24 (75%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEE 630
EEE+ E+EEE E+EEE EE E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 33.9 bits (78), Expect = 0.016
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEE 640
EEE+ E+EE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 33.5 bits (77), Expect = 0.018
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEE 639
EEE+ E+EEE ++EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 33.1 bits (76), Expect = 0.028
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEE 647
EE + E+EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 33.1 bits (76), Expect = 0.029
Identities = 13/24 (54%), Positives = 19/24 (79%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEE 645
EEE+ ++EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.038
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEE 635
EEE+ E+EEE E+E + EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.7 bits (75), Expect = 0.041
Identities = 13/24 (54%), Positives = 18/24 (75%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEE 637
EEE+ E+EEE E +EE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 32.3 bits (74), Expect = 0.045
Identities = 12/24 (50%), Positives = 18/24 (75%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEE 641
EEE+ E+E + E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 31.5 bits (72), Expect = 0.084
Identities = 13/24 (54%), Positives = 17/24 (70%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEE 644
EEE+ EEE E+EEE EE+ E +
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEVK 45
Score = 28.8 bits (65), Expect = 0.75
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 597 RGEREEEEEEEEEEEEEEEEE 617
+ E EEE E+EEE EE+ E +
Sbjct: 25 KREDEEENEDEEEGEEQSEVK 45
Score = 27.7 bits (62), Expect = 1.9
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 596 RRGEREEEEEEEEEEEEEEEE 616
+R + EE E+EEE EE+ E +
Sbjct: 25 KREDEEENEDEEEGEEQSEVK 45
Score = 26.5 bits (59), Expect = 6.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 638 EEEEEEEEEEEEEEEVRGGGKEE 660
EEE+ E+EEE E+EE E
Sbjct: 22 EEEKREDEEENEDEEEGEEQSEV 44
>gnl|CDD|219838 pfam08432, DUF1742, Fungal protein of unknown function (DUF1742).
This is a family of fungal proteins of unknown function.
Length = 182
Score = 39.7 bits (93), Expect = 0.002
Identities = 9/56 (16%), Positives = 43/56 (76%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E+ ++E EE+++ + ++++ +++ +++++++++++++ E+++E+E E+++
Sbjct: 68 AEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLE 123
Score = 39.3 bits (92), Expect = 0.002
Identities = 8/56 (14%), Positives = 42/56 (75%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E EE+++ + ++++ ++++++++++++ +++++ E+++E+E E++ E+ +
Sbjct: 75 KKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYS 130
Score = 38.5 bits (90), Expect = 0.004
Identities = 10/59 (16%), Positives = 45/59 (76%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+L E+ ++E EE+++ + ++++ +++++++ +++++++++ E+++E+E E++ E+
Sbjct: 66 ELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLED 124
Score = 37.4 bits (87), Expect = 0.011
Identities = 11/56 (19%), Positives = 44/56 (78%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E EE E+ ++E EE+++ + ++++ + ++++++++++++++++ E+++E+E E +
Sbjct: 66 ELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDK 121
Score = 36.6 bits (85), Expect = 0.019
Identities = 7/59 (11%), Positives = 39/59 (66%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ ++++ ++++++++++++++++++ E++ ++E E++ E+ + E E + R
Sbjct: 84 WKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSELKPR 142
Score = 35.8 bits (83), Expect = 0.033
Identities = 9/54 (16%), Positives = 44/54 (81%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++E EE E+ ++E EE+++ + +++ ++++++++++++++++++ E+++E+
Sbjct: 63 KKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEK 116
Score = 35.8 bits (83), Expect = 0.034
Identities = 7/54 (12%), Positives = 39/54 (72%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+++ + ++++ +++++++++++++++ + E+++E+E E++ E+ + E
Sbjct: 79 EEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSET 132
Score = 33.5 bits (77), Expect = 0.21
Identities = 5/54 (9%), Positives = 38/54 (70%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
++ + ++++ ++++++++++++++++++ +++E+E E++ E+ + E
Sbjct: 81 KQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLS 134
Score = 33.1 bits (76), Expect = 0.24
Identities = 8/55 (14%), Positives = 44/55 (80%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+++++E EE E+ ++E EE+++ + + ++ ++++++++++++++++++ E+++
Sbjct: 61 KKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDE 115
Score = 32.7 bits (75), Expect = 0.30
Identities = 12/59 (20%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEE---EEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E E +++++E EE E+V++E EE++ ++++ ++++++++++++ + K E
Sbjct: 55 AEYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKK 113
Score = 32.7 bits (75), Expect = 0.36
Identities = 7/57 (12%), Positives = 36/57 (63%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ ++++ ++++++++++++++++++ E+ E+E E++ E+ + E E
Sbjct: 83 KWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEKEAEDKLEDLTKSYSETLSTLSEL 139
Score = 32.4 bits (74), Expect = 0.50
Identities = 9/60 (15%), Positives = 42/60 (70%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E +++++E EE E+ ++E EE+ + + ++++ +++++++++++++++++ E+
Sbjct: 57 YTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEKKDEK 116
Score = 32.0 bits (73), Expect = 0.63
Identities = 11/57 (19%), Positives = 41/57 (71%), Gaps = 5/57 (8%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQ-----EEEEEEEEEEEEEEEEEEEEEEEEE 652
E E +++++E EE E+ ++E EE Q +++ ++++++++++++++++++ E+
Sbjct: 56 EYTEAKKKKKELAEEIEKVKKEYEEKQKWKWKKKKSKKKKDKDKDKKDDKKDDKSEK 112
>gnl|CDD|221620 pfam12527, DUF3727, Protein of unknown function (DUF3727). This
domain family is found in bacteria and eukaryotes, and
is approximately 100 amino acids in length.
Length = 100
Score = 38.0 bits (89), Expect = 0.002
Identities = 19/45 (42%), Positives = 28/45 (62%), Gaps = 1/45 (2%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
L RGE E EE+E E EEE++++E+E EEE + E++E
Sbjct: 12 LTVRGELPEPEEDEILELEEEDDDDEDE-EEEYELLASFYHEDQE 55
Score = 34.9 bits (81), Expect = 0.023
Identities = 17/39 (43%), Positives = 26/39 (66%), Gaps = 4/39 (10%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEE----EEEEEE 651
E E EE+E+ E EEE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 33.3 bits (77), Expect = 0.063
Identities = 16/39 (41%), Positives = 23/39 (58%), Gaps = 6/39 (15%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYV 667
E EE+E E EEE++++E+EEEE E+ FY
Sbjct: 19 PEPEEDEILELEEEDDDDEDEEEEY------ELLASFYH 51
Score = 33.3 bits (77), Expect = 0.068
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E EE+E E++EE++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.9 bits (76), Expect = 0.087
Identities = 15/29 (51%), Positives = 23/29 (79%)
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E+ E EE+E E EEE++++E+EEEE E+
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYEL 45
Score = 32.6 bits (75), Expect = 0.14
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E E EE+E E EEE++ E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.2 bits (74), Expect = 0.17
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E E EE+E E EEE+++ ++EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.2 bits (74), Expect = 0.19
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E E EE+E E EEE++++E+ +EE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 32.2 bits (74), Expect = 0.20
Identities = 16/39 (41%), Positives = 24/39 (61%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E E EE+E E EEE++++E +EEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 31.8 bits (73), Expect = 0.23
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E EE+E E E +++++E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 31.4 bits (72), Expect = 0.33
Identities = 17/39 (43%), Positives = 23/39 (58%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E E EE+E E EEE+ +E+EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 31.4 bits (72), Expect = 0.39
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E E EE+E E EEE++++ EEEE E E++E
Sbjct: 17 ELPEPEEDEILELEEEDDDDEDEEEEYELLASFYHEDQE 55
Score = 29.1 bits (66), Expect = 2.1
Identities = 13/27 (48%), Positives = 20/27 (74%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEE 652
V+ E E EE+E E EEE++++E+EE
Sbjct: 14 VRGELPEPEEDEILELEEEDDDDEDEE 40
>gnl|CDD|184724 PRK14520, rpsP, 30S ribosomal protein S16; Provisional.
Length = 155
Score = 38.9 bits (91), Expect = 0.002
Identities = 8/49 (16%), Positives = 13/49 (26%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + E ++++ E E E EEE
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 38.5 bits (90), Expect = 0.003
Identities = 9/53 (16%), Positives = 14/53 (26%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E E + E +++ E E E EEE
Sbjct: 102 KLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEE 154
Score = 38.1 bits (89), Expect = 0.004
Identities = 8/48 (16%), Positives = 13/48 (27%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + E ++++ E E E EEE
Sbjct: 108 AALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 37.8 bits (88), Expect = 0.006
Identities = 8/49 (16%), Positives = 13/49 (26%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E + E ++++ E E E EEE
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 37.0 bits (86), Expect = 0.010
Identities = 7/49 (14%), Positives = 12/49 (24%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E + E ++++ E E EEE
Sbjct: 107 NAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 37.0 bits (86), Expect = 0.011
Identities = 7/46 (15%), Positives = 12/46 (26%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E + E ++++ E E EEE
Sbjct: 110 LAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 36.6 bits (85), Expect = 0.011
Identities = 8/52 (15%), Positives = 14/52 (26%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E + E ++++ + E E EEE
Sbjct: 104 ELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 35.1 bits (81), Expect = 0.040
Identities = 8/46 (17%), Positives = 13/46 (28%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E + E ++++ E E E EEE
Sbjct: 110 LAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
Score = 34.3 bits (79), Expect = 0.070
Identities = 6/56 (10%), Positives = 12/56 (21%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + E E + E +++ E E E
Sbjct: 96 AEPKPSKLELFNAALAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAA 151
Score = 33.9 bits (78), Expect = 0.10
Identities = 7/46 (15%), Positives = 11/46 (23%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E ++++ E E E EEE
Sbjct: 110 LAEADGGPTAEATTPKKKKAAAEAAAAEAAAPAAEAAAAAAAEEEA 155
>gnl|CDD|218482 pfam05178, Kri1, KRI1-like family. The yeast member of this family
(Kri1p) is found to be required for 40S ribosome
biogenesis in the nucleolus.
Length = 99
Score = 37.6 bits (88), Expect = 0.002
Identities = 19/74 (25%), Positives = 42/74 (56%), Gaps = 2/74 (2%)
Query: 588 IENIIQLIRR--GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
IE ++ I++ G R + EE+ + + + E+ +EE ++ ++ EEE+EEE+ ++
Sbjct: 26 IEEKLEKIKKVAGLRGADLSEEDLADGDFDPEKWDEEMAKLFGDDYYEEEDEEEKPTWDD 85
Query: 646 EEEEEEEVRGGGKE 659
+E+ + V +E
Sbjct: 86 DEDIGDLVPDEDEE 99
Score = 30.3 bits (69), Expect = 0.72
Identities = 23/98 (23%), Positives = 40/98 (40%), Gaps = 36/98 (36%)
Query: 599 EREEEEEEEEEEE---------EEEEE-----------EEEEEEEEEVQEE--------- 629
ER+EEE+ + EEE EE EE + EE++ +
Sbjct: 2 ERKEEEKAQREEELKRLKNLKREEIEEKLEKIKKVAGLRGADLSEEDLADGDFDPEKWDE 61
Query: 630 -------EEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++ EEE+EEE+ +++E+ ++ EE
Sbjct: 62 EMAKLFGDDYYEEEDEEEKPTWDDDEDIGDLVPDEDEE 99
>gnl|CDD|205480 pfam13300, DUF4078, Domain of unknown function (DUF4078). This
family is found from fungi to humans, but its exact
function is not known.
Length = 88
Score = 37.3 bits (87), Expect = 0.002
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+EEE +E+ EE E+ EE E ++E EE +E+ + EE ++ EE
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 35.7 bits (83), Expect = 0.008
Identities = 19/48 (39%), Positives = 30/48 (62%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+EEE +E+ EE E+ EE +E +E EE +E+ + EE ++ EE R
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEERR 88
Score = 34.6 bits (80), Expect = 0.020
Identities = 18/47 (38%), Positives = 29/47 (61%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+EEE +E+ EE E+ EE E E + +EE +E+ + EE ++ EE
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 34.6 bits (80), Expect = 0.021
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
++EEE +E+ EE E+ EE E E +E +E +E+ + EE ++ EE
Sbjct: 40 KDEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 33.8 bits (78), Expect = 0.044
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+EEE +E+ EE E+ EE E E + EE +E+ + EE ++ EE
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 33.8 bits (78), Expect = 0.046
Identities = 18/46 (39%), Positives = 27/46 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E E +E+ EE E+ EE E E +E EE +E+ + EE ++ EE
Sbjct: 42 EEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
Score = 32.6 bits (75), Expect = 0.10
Identities = 18/39 (46%), Positives = 24/39 (61%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+EEE +E+ EE E+ EE E E +E EE +E R EE
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEE 79
Score = 30.7 bits (70), Expect = 0.49
Identities = 15/44 (34%), Positives = 28/44 (63%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+EEE +E+++E E+ EE E E +E EE +E+ + +++I
Sbjct: 41 DEEERKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKI 84
Score = 27.6 bits (62), Expect = 5.2
Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEE--EEEEEEVQEEEEEEEEE 636
R+ + EE E+ EE E E +E EE E+ + ++E ++ EE
Sbjct: 45 RKEQMEELEKAREETERERKEREERKEKRKRAIEERRKKIEER 87
>gnl|CDD|217476 pfam03286, Pox_Ag35, Pox virus Ag35 surface protein.
Length = 198
Score = 39.4 bits (92), Expect = 0.002
Identities = 12/59 (20%), Positives = 32/59 (54%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++ +++++E+ EEE++ E ++++ EE E + EE + +E + + E+
Sbjct: 65 TKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDD 123
Score = 39.0 bits (91), Expect = 0.003
Identities = 15/75 (20%), Positives = 37/75 (49%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
K + +PR + ++ ++E+ EEE++ E ++++ EE E + + EE + +E
Sbjct: 49 KQPKKKRPTTPRKPATTKKSKKKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQE 108
Query: 636 EEEEEEEEEEEEEEE 650
+ + E++
Sbjct: 109 SASANSLSDIDNEDD 123
Score = 35.9 bits (83), Expect = 0.034
Identities = 10/54 (18%), Positives = 27/54 (50%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ EE++ E ++++ EE E + + EE +E + + E++ ++ +
Sbjct: 75 KLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDMDDSD 128
Score = 35.5 bits (82), Expect = 0.049
Identities = 10/57 (17%), Positives = 31/57 (54%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ + + EEE++ E ++++ EE E + + +E + +E + + E++ ++
Sbjct: 70 KKDKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDMDD 126
Score = 34.7 bits (80), Expect = 0.075
Identities = 11/51 (21%), Positives = 28/51 (54%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EEE++ E ++++ EE E + + EE + +E + + E++ ++ +
Sbjct: 78 EEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDMDDSD 128
Score = 32.4 bits (74), Expect = 0.49
Identities = 10/52 (19%), Positives = 27/52 (51%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EEE++ E ++++ EE E + + E + +E + + E++ ++ +
Sbjct: 77 TEEEKKPESDDDKTEENENDPDNNEESGDSQESASANSLSDIDNEDDMDDSD 128
Score = 31.3 bits (71), Expect = 1.0
Identities = 12/40 (30%), Positives = 23/40 (57%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
++E EEE++ E ++++ EE E + + E G +E S
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQESAS 111
Score = 30.9 bits (70), Expect = 1.7
Identities = 8/38 (21%), Positives = 22/38 (57%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
++E+ E +++ E ++++ EE E + + EE + +
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
Score = 30.1 bits (68), Expect = 2.6
Identities = 14/88 (15%), Positives = 32/88 (36%), Gaps = 8/88 (9%)
Query: 559 VPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEE--EEEE 616
P K K K T + +L ++ E ++++ EE E +
Sbjct: 47 SPKQPKKKRPTTPRKPATTKKSKKKDKE------KLTEEEKKPESDDDKTEENENDPDNN 100
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
EE + +E + + E++ ++ +
Sbjct: 101 EESGDSQESASANSLSDIDNEDDMDDSD 128
Score = 29.7 bits (67), Expect = 3.7
Identities = 9/38 (23%), Positives = 21/38 (55%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++E+ EE ++ E ++++ EE E + + EE +
Sbjct: 72 DKEKLTEEEKKPESDDDKTEENENDPDNNEESGDSQES 109
>gnl|CDD|187701 cd09277, RNase_HI_bacteria_HBD, Bacterial RNase HI containing a
hybrid binding domain (HBD) at the N-terminus.
Ribonuclease H (RNase H) enzymes are divided into two
major families, Type 1 and Type 2, based on amino acid
sequence similarities and biochemical properties. RNase
H is an endonuclease that cleaves the RNA strand of an
RNA/DNA hybrid in a sequence non-specific manner in the
presence of divalent cations. RNase H is involved in
DNA replication, repair and transcription. RNase H is
widely present in various organisms, including bacteria,
archaea and eukaryotes and most prokaryotic and
eukaryotic genomes contain multiple RNase H genes.
Despite the lack of amino acid sequence homology, Type 1
and type 2 RNase H share a main-chain fold and steric
configurations of the four acidic active-site (DEDD)
residues and have the same catalytic mechanism and
functions in cells. One of the important functions of
RNase H is to remove Okazaki fragments during DNA
replication. Prokaryotic RNase H varies greatly in
domain structures and substrate specificities.
Prokaryotes and some single-cell eukaryotes do not
require RNase H for viability. Some bacteria
distinguished from other bacterial RNase HI in the
presence of a hybrid binding domain (HBD) at the
N-terminus which is commonly present at the N-termini of
eukaryotic RNase HI. It has been reported that this
domain is required for dimerization and processivity of
RNase HI upon binding to RNA-DNA hybrids.
Length = 133
Score = 38.3 bits (90), Expect = 0.002
Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Query: 409 ITKVYSTWSYLKLCKK-DITFMWCPSHCGIKGNEIVDVAAKN 449
TK Y + K+ KK I+F+ +H G K NE+ D AK
Sbjct: 91 GTKEYKEF-MDKIKKKIKISFVKVKAHSGDKYNELADKLAKK 131
Score = 36.3 bits (85), Expect = 0.012
Identities = 19/58 (32%), Positives = 23/58 (39%), Gaps = 15/58 (25%)
Query: 474 NSEWQNLWDNVPNTNKLKTIR-----PSIKK--DITFMWCPSHCGIKGNELVDVAAKN 524
EW+ NK T IKK I+F+ +H G K NEL D AK
Sbjct: 82 TGEWK--------ANKEGTKEYKEFMDKIKKKIKISFVKVKAHSGDKYNELADKLAKK 131
>gnl|CDD|222665 pfam14303, NAM-associated, No apical meristem-associated C-terminal
domain. This domain is found in a number of different
types of plant proteins including NAM-like proteins.
Length = 147
Score = 38.5 bits (90), Expect = 0.002
Identities = 14/53 (26%), Positives = 32/53 (60%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ + + ++EE E+E+E+EE + E ++E E E+++ E + +EE++
Sbjct: 71 KLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKK 123
Score = 38.5 bits (90), Expect = 0.003
Identities = 16/55 (29%), Positives = 35/55 (63%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E+ ++ + ++EE E+E+E+EE + E E+E E E+++ E + +EE+++
Sbjct: 70 EKLRRDKLKAKKEEAEKEKEKEERFMKALAEAEKERAELEKKKAEAKLMKEEKKI 124
>gnl|CDD|218218 pfam04702, Vicilin_N, Vicilin N terminal region. This region is
found in plant seed storage proteins, N-terminal to the
Cupin domain (pfam00190). In Macadamia integrifolia,
this region is processed into peptides of approximately
50 amino acids containing a C-X-X-X-C-(10-12)X-C-X-X-X-C
motif. These peptides exhibit antimicrobial activity in
vitro.
Length = 147
Score = 38.5 bits (89), Expect = 0.002
Identities = 13/54 (24%), Positives = 33/54 (61%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
RR E+E + E+++ E +E+ +EE+++ ++ EE+ + E+ ++ ++ E
Sbjct: 18 RRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEP 71
Score = 38.5 bits (89), Expect = 0.003
Identities = 16/65 (24%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Query: 597 RGEREEEE-EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
RG+RE+++ E +E+ +EE++++ + EE+ Q E+ ++ ++ E ++ R
Sbjct: 25 RGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERR 84
Query: 656 GGKEE 660
KE+
Sbjct: 85 YEKEQ 89
Score = 38.2 bits (88), Expect = 0.004
Identities = 14/57 (24%), Positives = 33/57 (57%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ +R+ +E ++ +++E+ +++ + E +E+ +E E E +E EEE EE
Sbjct: 90 QQQQRQYQECQQRCQQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEERSEE 146
Score = 37.8 bits (87), Expect = 0.004
Identities = 12/55 (21%), Positives = 31/55 (56%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+R +E + E+++ E +E+ +EE++ Q + EE+ + E+ ++ ++ E
Sbjct: 17 QRRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEP 71
Score = 37.0 bits (85), Expect = 0.008
Identities = 12/61 (19%), Positives = 32/61 (52%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
R +E+ +EE++++ + EE+ + E+ Q+ ++ E ++ E E+E + +
Sbjct: 35 RRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQR 94
Query: 659 E 659
+
Sbjct: 95 Q 95
Score = 37.0 bits (85), Expect = 0.009
Identities = 13/54 (24%), Positives = 31/54 (57%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+E + E+++ E +E+ +EE+ Q+ + EE+ + E+ ++ ++ E R
Sbjct: 21 EQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHR 74
Score = 35.8 bits (82), Expect = 0.024
Identities = 12/52 (23%), Positives = 32/52 (61%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
RR E + ++ E+ + E+E + E+++ + +E+ +EE++++ + EE+
Sbjct: 3 RRNEDDPQQRYEQCQRRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREED 54
Score = 35.5 bits (81), Expect = 0.029
Identities = 13/53 (24%), Positives = 31/53 (58%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R E+E + E+++ E +E+ +EE Q++ + EE+ + E+ ++ ++ E
Sbjct: 19 RCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEP 71
Score = 35.5 bits (81), Expect = 0.031
Identities = 13/56 (23%), Positives = 33/56 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+R E+E + E+++ E +E+ +E Q+++ + EE+ + E+ ++ ++ E R
Sbjct: 17 QRRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPR 72
Score = 35.5 bits (81), Expect = 0.032
Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 11/65 (16%)
Query: 596 RRGEREEEEEEEEEEE-----EEEEEEEEEEEE------EEVQEEEEEEEEEEEEEEEEE 644
RR E+E+++++ + +E +++E+ +++ E+ QE E E +E EEE
Sbjct: 83 RRYEKEQQQQQRQYQECQQRCQQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEE 142
Query: 645 EEEEE 649
EE
Sbjct: 143 RSEEG 147
Score = 35.5 bits (81), Expect = 0.033
Identities = 14/65 (21%), Positives = 37/65 (56%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+R ER E+E+++++ + +E ++ +++E+ +++ + E E+ +E E E +
Sbjct: 79 QRCERRYEKEQQQQQRQYQECQQRCQQQEQRPRRQQQCQRECREQYQEHGRGEGENINQE 138
Query: 656 GGKEE 660
G +E
Sbjct: 139 GEEER 143
Score = 35.1 bits (80), Expect = 0.040
Identities = 13/60 (21%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
Query: 596 RRGERE-EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
RR + + +EE++++ + EE+ + E+ ++ Q+ E ++ E E+E++++ R
Sbjct: 35 RRCKEQYKEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQR 94
Score = 34.7 bits (79), Expect = 0.064
Identities = 17/64 (26%), Positives = 31/64 (48%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R E Q +R +E ++ +++E+ +++ + E E +E E E +E EEE
Sbjct: 84 RYEKEQQQQQRQYQECQQRCQQQEQRPRRQQQCQRECREQYQEHGRGEGENINQEGEEER 143
Query: 647 EEEE 650
EE
Sbjct: 144 SEEG 147
Score = 32.4 bits (73), Expect = 0.38
Identities = 15/57 (26%), Positives = 34/57 (59%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
G R E++ ++ E+ + E+E + E Q+ E +E+ +EE++++ + EE+ + R
Sbjct: 2 GRRNEDDPQQRYEQCQRRCEQETRGQREQQQCERRCKEQYKEEQQQQRQREEDPQRR 58
Score = 28.9 bits (64), Expect = 4.9
Identities = 9/60 (15%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
Query: 598 GEREEEEEEEEEEEEEEEEE--EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E ++++ + EE+ + E+ + ++ E ++ E E+E+++++ + +E +
Sbjct: 42 KEEQQQQRQREEDPQRRYEQCQQRCQQHEPRHRPTCQQRCERRYEKEQQQQQRQYQECQQ 101
>gnl|CDD|218003 pfam04281, Tom22, Mitochondrial import receptor subunit Tom22. The
mitochondrial protein translocase family, which is
responsible for movement of nuclear encoded pre-proteins
into mitochondria, is very complex with at least 19
components. These proteins include several chaperone
proteins, four proteins of the outer membrane
translocase (Tom) import receptor, five proteins of the
Tom channel complex, five proteins of the inner membrane
translocase (Tim) and three "motor" proteins. This
family represents the Tom22 proteins. The N terminal
region of Tom22 has been shown to have chaperone-like
activity, and the C terminal region faces the
intermembrane face.
Length = 136
Score = 38.4 bits (90), Expect = 0.003
Identities = 9/46 (19%), Positives = 25/46 (54%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E E+E +E+ + +EE +++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 38.0 bits (89), Expect = 0.004
Identities = 9/45 (20%), Positives = 25/45 (55%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E+E +E+ + QEE ++++E++ + + + ++ + E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFEN 49
Score = 37.6 bits (88), Expect = 0.005
Identities = 8/46 (17%), Positives = 25/46 (54%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E+E +E+ + +E ++++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 37.2 bits (87), Expect = 0.006
Identities = 8/46 (17%), Positives = 25/46 (54%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E+E +E+ + +E ++++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 37.2 bits (87), Expect = 0.006
Identities = 7/46 (15%), Positives = 25/46 (54%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E+E +E+ + + + ++++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 36.5 bits (85), Expect = 0.012
Identities = 9/46 (19%), Positives = 24/46 (52%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E E+E +E+ + +EE ++E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 34.9 bits (81), Expect = 0.039
Identities = 9/46 (19%), Positives = 24/46 (52%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E E+E +E+ + +EE + +E++ + + + ++ + E E
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
Score = 34.5 bits (80), Expect = 0.058
Identities = 7/39 (17%), Positives = 21/39 (53%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E+E +E+ + +EE ++++E++ + + +
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISD 43
Score = 33.8 bits (78), Expect = 0.083
Identities = 7/43 (16%), Positives = 23/43 (53%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E+E +E+ +EE ++++E++ + + + ++ +
Sbjct: 5 TEVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDF 47
Score = 33.8 bits (78), Expect = 0.11
Identities = 9/45 (20%), Positives = 24/45 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E E+E +E+ + +EE ++++E + + + ++ + E E
Sbjct: 6 EVEDETFQEKPAAPKNLAQEESDDDDEDDTDTDSDISDDSDFENE 50
>gnl|CDD|187704 cd09280, RNase_HI_eukaryote_like, Eukaryotic RNase H is longer and
more complex than their prokaryotic counterparts and
unlike prokaryote, RNase H are essential in higher
eukaryote. Ribonuclease H (RNase H) is classified into
two families, type 1 (prokaryotic RNase HI, eukaryotic
RNase H1 and viral RNase H) and type 2 (prokaryotic
RNase HII and HIII, and eukaryotic RNase H2). RNase H is
an endonuclease that cleaves the RNA strand of an
RNA/DNA hybrid in a sequence non-specific manner. RNase
H is involved in DNA replication, repair and
transcription. One of the important functions of RNase H
is to remove Okazaki fragments during DNA replication.
RNase H is widely present in various organisms,
including bacteria, archaea and eukaryote and most
prokaryotic and eukaryotic genomes contain multiple
RNase H genes. Despite the lack of amino acid sequence
homology, Type 1 and type 2 RNase H share a main-chain
fold and steric configurations of the four acidic
active-site (DEDD) residues and have the same catalytic
mechanism and functions in cells. Eukaryotic RNase H is
longer and more complex than in prokaryotes. Almost all
eukaryotic RNase HI have highly conserved regions at the
N-terminal called hybrid binding domain (HBD). It is
speculated that the HBD contributes to binding the
RNA/DNA hybrid. Prokaryotes and some single-cell
eukaryotes do not require RNase H for viability, but
RNase H is essential in higher eukaryotes. RNase H
knockout mice lack mitochondrial DNA replication and die
as embryos.
Length = 150
Score = 38.3 bits (90), Expect = 0.003
Identities = 28/105 (26%), Positives = 36/105 (34%), Gaps = 26/105 (24%)
Query: 366 AELIAIFLCLEAILDSPSG--KFLIVTDS--------------------RSSLAALSNVR 403
AEL A+ L I + G K +I TDS S ++N
Sbjct: 46 AELRAVIHALRLIKEVGEGLTKLVIATDSEYVVNGVTEWIPKWKKNGWKTSKGKPVANKD 105
Query: 404 FINPLITKVYSTWSYLKLCKKDITFMWCPSHCGIKGNEIVDVAAK 448
I L + L+ + F P H GI GNE D AK
Sbjct: 106 LIKELDKLLEE----LEERGIRVKFWHVPGHSGIYGNEEADRLAK 146
Score = 30.6 bits (70), Expect = 1.3
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 500 DITFMWCPSHCGIKGNELVDVAAK 523
+ F P H GI GNE D AK
Sbjct: 123 RVKFWHVPGHSGIYGNEEADRLAK 146
>gnl|CDD|225177 COG2268, COG2268, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 548
Score = 40.2 bits (94), Expect = 0.003
Identities = 18/64 (28%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + + E E E+ E E+ +EE+ + E+EVQ + E E E ++E
Sbjct: 275 EAEVAA-WKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIERQKET 333
Query: 649 EEEE 652
E E
Sbjct: 334 ELEP 337
Score = 39.8 bits (93), Expect = 0.004
Identities = 17/75 (22%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
++ P+ + I +R+ +EE + E + E E E EE E E+
Sbjct: 331 KETELEPQERSY--FINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAERAEQA 388
Query: 640 EEEEEEEEEEEEEVR 654
E E+E+V
Sbjct: 389 ALVAAAEAAEQEQVE 403
Score = 36.3 bits (84), Expect = 0.055
Identities = 17/67 (25%), Positives = 29/67 (43%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
I E E E + E E E+ E E+ +QEE+ + E+E + + E E +
Sbjct: 269 IILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMRVGLIE 328
Query: 655 GGGKEEI 661
+ E+
Sbjct: 329 RQKETEL 335
Score = 35.6 bits (82), Expect = 0.085
Identities = 20/69 (28%), Positives = 29/69 (42%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
D +G RI ++Q E E E+E E E + + E E E Q + E+ E +
Sbjct: 209 DALGRRRIAQVLQDAEIAENEAEKETEIAIAEANRDAKLVELEVEQQPAGKTAEQTREVK 268
Query: 641 EEEEEEEEE 649
E E E
Sbjct: 269 IILAETEAE 277
Score = 35.2 bits (81), Expect = 0.12
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E++ + E+ E + E E EV + E E E+ E E+ +EE+ +
Sbjct: 251 EVEQQPAGKTAEQTREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQ 306
Score = 35.2 bits (81), Expect = 0.14
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R + E E E + E E E+ E + E+ +EE+ + E+E + + E E+R
Sbjct: 264 TREVKIILAETEAEVAAWKAETRREAEQAEILAEQAIQEEKAQAEQEVQHAKALEAREMR 323
Query: 655 GG 656
G
Sbjct: 324 VG 325
Score = 32.9 bits (75), Expect = 0.69
Identities = 14/56 (25%), Positives = 22/56 (39%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
ER++E E E +E + + +EE + E + E E E EE
Sbjct: 328 ERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEAE 383
Score = 31.7 bits (72), Expect = 1.2
Identities = 15/67 (22%), Positives = 25/67 (37%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+++ L R R E ++E E E +E + Q +EE + E + E
Sbjct: 311 VQHAKALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAE 370
Query: 648 EEEEEVR 654
E R
Sbjct: 371 AAVETAR 377
Score = 31.7 bits (72), Expect = 1.4
Identities = 12/65 (18%), Positives = 22/65 (33%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+ I + +E + + +EE + + + E E E EE
Sbjct: 323 RVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARETEEA 382
Query: 647 EEEEE 651
E E+
Sbjct: 383 ERAEQ 387
Score = 31.3 bits (71), Expect = 1.9
Identities = 11/68 (16%), Positives = 21/68 (30%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ E E ++E E E +E + + + +EE + E + E
Sbjct: 314 AKALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAV 373
Query: 656 GGKEEISL 663
E
Sbjct: 374 ETARETEE 381
Score = 31.0 bits (70), Expect = 2.7
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 6/73 (8%)
Query: 587 RIENIIQLIRRGEREEEEEEEE------EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
R + + R+ E E E +E + + +EE + E + + E E E
Sbjct: 320 REMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQAEAAVETARET 379
Query: 641 EEEEEEEEEEEEV 653
EE E E+
Sbjct: 380 EEAERAEQAALVA 392
Score = 29.8 bits (67), Expect = 4.9
Identities = 11/67 (16%), Positives = 23/67 (34%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
Q ++ + E E E ++E E E +E + + +EE + E +
Sbjct: 309 QEVQHAKALEAREMRVGLIERQKETELEPQERSYFINAAQRQAQEEAKAAANIAEAIGAQ 368
Query: 653 VRGGGKE 659
+
Sbjct: 369 AEAAVET 375
>gnl|CDD|220438 pfam09845, DUF2072, Zn-ribbon containing protein (DUF2072). This
archaeal protein has no known function.
Length = 121
Score = 37.8 bits (88), Expect = 0.003
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR--GGGKEEISL 663
E + + + EE+ EE++ E +EE E +++ E+ EE E E VR G G E++L
Sbjct: 35 ERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERIESVRILGPGSYELNL 91
Score = 34.0 bits (78), Expect = 0.056
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
RE + + + EE+ EE E E +EE+ E +++ E+ EE E E
Sbjct: 33 VRERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERIE 77
Score = 32.4 bits (74), Expect = 0.24
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
R + + + EE+ EE E E +EE EV+++ E+ EE E E
Sbjct: 34 RERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERIE 77
Score = 31.7 bits (72), Expect = 0.38
Identities = 15/43 (34%), Positives = 23/43 (53%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E + + + EE+ EE E E EE E +++ E+ EE E E
Sbjct: 35 ERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERIE 77
Score = 31.3 bits (71), Expect = 0.54
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+R +R + + EE+ EE E E +EE E Q+ E+ EE E E
Sbjct: 33 VRERKRPKPDVPEEKPVEEIERETDEELLEVKQDREQGEEGERIE 77
>gnl|CDD|223783 COG0711, AtpF, F0F1-type ATP synthase, subunit b [Energy production
and conversion].
Length = 161
Score = 38.4 bits (90), Expect = 0.003
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 586 PRIENII----QLIRRGEREEEEEEEEEEEEEEEEEEE-EEEEEEVQEEEEEEEEEEEEE 640
I + I E E +EE + E E+E EE E+ E E+ ++E E+
Sbjct: 29 KPILKALDERQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQI 88
Query: 641 EEEEEEEEEEEEVR 654
EE + E EEE R
Sbjct: 89 AEEIKAEAEEELER 102
Score = 33.8 bits (78), Expect = 0.12
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 18/86 (20%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE------------EEEVQEEEEEEE 634
R I + ER +EE + E E+E EE E+ E+ +E + E E
Sbjct: 38 RQAKIADDLAEAERLKEEAQALLAEYEQELEEAREQASEIIEQAKKEAEQIAEEIKAEAE 97
Query: 635 EEEE------EEEEEEEEEEEEEEVR 654
EE E E E E E+E EE+R
Sbjct: 98 EELERIKEAAEAEIEAEKERALEELR 123
>gnl|CDD|221185 pfam11719, Drc1-Sld2, DNA replication and checkpoint protein.
Genome duplication is precisely regulated by
cyclin-dependent kinases CDKs, which bring about the
onset of S phase by activating replication origins and
then prevent relicensing of origins until mitosis is
completed. The optimum sequence motif for CDK
phosphorylation is S/T-P-K/R-K/R, and Drc1-Sld2 is found
to have at least 11 potential phosphorylation sites.
Drc1 is required for DNA synthesis and S-M replication
checkpoint control. Drc1 associates with Cdc2 and is
phosphorylated at the onset of S phase when Cdc2 is
activated. Thus Cdc2 promotes DNA replication by
phosphorylating Drc1 and regulating its association with
Cut5. Sld2 and Sld3 represent the minimal set of S-CDK
substrates required for DNA replication.
Length = 397
Score = 40.2 bits (94), Expect = 0.003
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
EEE ++E + ++E E EE EEE + + +E R K
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRVFK 285
Score = 36.7 bits (85), Expect = 0.037
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
EEE ++E + E E EE ++EE + + +E
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 36.7 bits (85), Expect = 0.040
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
EEE ++E + E E EE EEE + + +E
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 36.3 bits (84), Expect = 0.042
Identities = 10/40 (25%), Positives = 18/40 (45%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+EEE ++E + E E EE +E + + +E
Sbjct: 241 QEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 36.3 bits (84), Expect = 0.044
Identities = 15/65 (23%), Positives = 31/65 (47%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R R + +E E + EE + +E+ + E +E++E+E++EE +EE +
Sbjct: 297 KMRPVRAKPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEK 356
Query: 655 GGGKE 659
+
Sbjct: 357 KQKVK 361
Score = 35.9 bits (83), Expect = 0.070
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
EEE ++E + E E EE EEE + + +E
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 35.2 bits (81), Expect = 0.12
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
EEE ++E + E E EE EEE + + +E
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 34.8 bits (80), Expect = 0.15
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
EEE ++E + E E E EEE + + +E
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 34.8 bits (80), Expect = 0.15
Identities = 10/39 (25%), Positives = 17/39 (43%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
EEE ++E + E E + EEE + + +E
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 34.8 bits (80), Expect = 0.16
Identities = 12/39 (30%), Positives = 18/39 (46%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
EEE ++E + E E EE EEE + + +E
Sbjct: 242 EEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 34.0 bits (78), Expect = 0.26
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+L++ E ++E + E E EE EEE V + +E
Sbjct: 238 ELVQEEESIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEP 280
Score = 33.6 bits (77), Expect = 0.29
Identities = 15/61 (24%), Positives = 29/61 (47%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+ +E E + EE + +E+ E +E++E+E++EE +EEV K
Sbjct: 301 VRAKPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKV 360
Query: 660 E 660
+
Sbjct: 361 K 361
Score = 33.6 bits (77), Expect = 0.32
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 6/65 (9%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEE------EEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ +E E + EE + +E+ +E++E+E++EE +EE E++++ ++
Sbjct: 304 KPSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGIDEDDEDEDDEESKEEVEKKQKVKKK 363
Query: 654 RGGGK 658
K
Sbjct: 364 PRKRK 368
Score = 29.8 bits (67), Expect = 6.0
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 17/94 (18%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE-----------------VQEE 629
I++ + ++R E EE EEE + + +E V+ +
Sbjct: 245 SIDDELDVLREIEAEEAGIGPIEEEVVDSQAANDEPRRVFKKKGQKRTTRRVKMRPVRAK 304
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
+E E + EE + +E+ + +
Sbjct: 305 PSDEPSLPESDIHEEIPKLDEKSLSEFLGYMGGI 338
>gnl|CDD|183731 PRK12766, PRK12766, 50S ribosomal protein L32e; Provisional.
Length = 232
Score = 39.4 bits (92), Expect = 0.003
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EV EE E E E+E EEEEEE+ + E E+R G E
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTE 95
Score = 39.1 bits (91), Expect = 0.005
Identities = 22/57 (38%), Positives = 29/57 (50%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E EE E E E+E EEEEEE+ +V+ E E+ E +EE + R GK
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEARLLTQRRREGK 116
Score = 38.3 bits (89), Expect = 0.007
Identities = 18/44 (40%), Positives = 25/44 (56%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
EE E E E+E EEEEEE+ + E E++ E+ E +EE
Sbjct: 63 EETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEAR 106
Score = 32.9 bits (75), Expect = 0.39
Identities = 19/55 (34%), Positives = 25/55 (45%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E EE E E E+E EEEEE + E E E+ E +EE + + E
Sbjct: 60 EVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTPELSDEEARLLTQRRRE 114
Score = 32.9 bits (75), Expect = 0.40
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 3/68 (4%)
Query: 578 SDQDEIG---SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
++ D IG + RI+ + + E E E E+E EEEEEE+ + E E + E+
Sbjct: 39 AEVDGIGNALAARIKADVGGLEVSEETEAEVEDEGGEEEEEEDADVETELRPRGLTEKTP 98
Query: 635 EEEEEEEE 642
E +EE
Sbjct: 99 ELSDEEAR 106
Score = 31.7 bits (72), Expect = 0.97
Identities = 13/28 (46%), Positives = 18/28 (64%)
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ EE E E E+E EEEEEE+ + E
Sbjct: 58 GLEVSEETEAEVEDEGGEEEEEEDADVE 85
Score = 31.7 bits (72), Expect = 0.99
Identities = 14/28 (50%), Positives = 17/28 (60%)
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+V E EE E E E+E EEEEEE+
Sbjct: 55 DVGGLEVSEETEAEVEDEGGEEEEEEDA 82
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation
factor RRN3. This family consists of several eukaryotic
proteins which are homologous to the yeast RRN3 protein.
RRN3 is one of the RRN genes specifically required for
the transcription of rDNA by RNA polymerase I (Pol I) in
Saccharomyces cerevisiae.
Length = 554
Score = 40.0 bits (94), Expect = 0.004
Identities = 12/39 (30%), Positives = 29/39 (74%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ ++EEEE V +E++++E++ + ++++EEE + EV
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVE 261
Score = 39.2 bits (92), Expect = 0.007
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ ++EEEE + +E++++E++ + ++++EEE + E R
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 38.8 bits (91), Expect = 0.009
Identities = 12/42 (28%), Positives = 29/42 (69%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E ++ ++EEEE +E++++E++ ++ +++EEE + E E
Sbjct: 221 ELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 38.8 bits (91), Expect = 0.010
Identities = 10/44 (22%), Positives = 27/44 (61%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
++ ++EEEE +++++E++ + ++++EEE + E E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTI 266
Score = 37.7 bits (88), Expect = 0.020
Identities = 11/45 (24%), Positives = 28/45 (62%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ ++EEEE +E+ +E++ + ++++EEE + E E ++
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIK 267
Score = 37.3 bits (87), Expect = 0.026
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
++ ++EEEE E++++E++ + ++++EEE + E E KE
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKE 268
Score = 37.3 bits (87), Expect = 0.029
Identities = 11/40 (27%), Positives = 29/40 (72%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
++ ++EEEE +E++++E+++ + ++++EEE + E E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 36.5 bits (85), Expect = 0.052
Identities = 10/44 (22%), Positives = 26/44 (59%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++ ++EEEE + +++E++ + ++++EEE + E E
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTI 266
Score = 36.1 bits (84), Expect = 0.062
Identities = 12/47 (25%), Positives = 29/47 (61%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++ ++EEEE +E++++ + + ++++EEE + E E +EV
Sbjct: 223 DDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVERTSTIKEV 269
Score = 35.7 bits (83), Expect = 0.074
Identities = 15/55 (27%), Positives = 35/55 (63%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
IE +++L + E ++ ++EEEE +E++++E++ ++++EEE + E E
Sbjct: 208 IERLLKLDVEIQNELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
Score = 34.6 bits (80), Expect = 0.21
Identities = 13/46 (28%), Positives = 30/46 (65%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E + E ++ ++EEEE +E++++E+ + ++++EEE + E E
Sbjct: 217 EIQNELDDIDDEEEERVLADEDDDDEDDMFDMDDDDEEESDPEVER 262
>gnl|CDD|233692 TIGR02031, BchD-ChlD, magnesium chelatase ATPase subunit D. This
model represents one of two ATPase subunits of the
trimeric magnesium chelatase responsible for insertion
of magnesium ion into protoporphyrin IX. This is an
essential step in the biosynthesis of both chlorophyll
and bacteriochlorophyll. This subunit is found in green
plants, photosynthetic algae, cyanobacteria and other
photosynthetic bacteria. Unlike subunit I (TIGR02030),
this subunit is not found in archaea [Biosynthesis of
cofactors, prosthetic groups, and carriers, Chlorophyll
and bacteriochlorphyll].
Length = 589
Score = 40.2 bits (94), Expect = 0.004
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
L+ R R E E + E E EEE + ++ + ++ EE ++ EE
Sbjct: 259 LLPRATRLPEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 37.9 bits (88), Expect = 0.020
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E + E + EEE +E ++ + ++ EE ++ EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 37.1 bits (86), Expect = 0.030
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E + E E +EE +E ++ + ++ EE ++ EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 37.1 bits (86), Expect = 0.031
Identities = 11/43 (25%), Positives = 20/43 (46%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E + E EEE +E ++ + ++ EE ++ EE
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEE 309
Score = 35.2 bits (81), Expect = 0.14
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E + E E EEE +E ++ + ++ EE +++
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQI 306
Score = 31.3 bits (71), Expect = 1.9
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E EEE +E ++ + ++ EE ++ EE + + E + +
Sbjct: 284 EPEEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDN 322
Score = 31.3 bits (71), Expect = 2.2
Identities = 11/44 (25%), Positives = 19/44 (43%), Gaps = 2/44 (4%)
Query: 620 EEEEEEVQEE--EEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E E + E E EEE +E ++ + ++ E EE+
Sbjct: 267 PEPEPQPPPPPPPPEPPEPEEEPDEPDQTDPDDGEETDQIPEEL 310
Score = 30.2 bits (68), Expect = 3.9
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
EEE +E ++ + ++ EE ++ EE+ + E + +
Sbjct: 286 EEEPDEPDQTDPDDGEETDQIPEELMFDAVEADLPDN 322
>gnl|CDD|227352 COG5019, CDC3, Septin family protein [Cell division and chromosome
partitioning / Cytoskeleton].
Length = 373
Score = 40.0 bits (94), Expect = 0.004
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
I R E E E +++ E+ E+E+ EE E+ + EE +E + EE +++ E+ E
Sbjct: 303 LKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLE 362
Query: 649 EEEE 652
+ E
Sbjct: 363 KRLE 366
Score = 35.8 bits (83), Expect = 0.061
Identities = 21/79 (26%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
Query: 593 QLIRRGEREEEEEEEEEEE--EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE---- 646
+L E +E E EEE E +++ E+++E+E+ EE E+ EE +E
Sbjct: 291 KLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSK 350
Query: 647 -EEEEEEVRGGGKEEISLH 664
EE ++++ K L
Sbjct: 351 LEEIQKKLEDLEKRLEKLK 369
Score = 35.4 bits (82), Expect = 0.082
Identities = 18/68 (26%), Positives = 37/68 (54%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
G P ++ I + E E +++ E+ E+E+ EE E+ ++E +E + EE +++
Sbjct: 299 GEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKL 358
Query: 644 EEEEEEEE 651
E+ E+ E
Sbjct: 359 EDLEKRLE 366
Score = 34.2 bits (79), Expect = 0.20
Identities = 21/66 (31%), Positives = 33/66 (50%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R E + L GE +E E EEE E +++ E+ ++E+ EE E+ EE +E
Sbjct: 288 RTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKEL 347
Query: 647 EEEEEE 652
+ EE
Sbjct: 348 NSKLEE 353
Score = 32.7 bits (75), Expect = 0.62
Identities = 16/58 (27%), Positives = 27/58 (46%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R E+ + E +E E EEE +++ E+ E+E+ EE E+ EE +
Sbjct: 288 RTEKLSGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERK 345
Score = 31.1 bits (71), Expect = 2.1
Identities = 17/73 (23%), Positives = 30/73 (41%), Gaps = 2/73 (2%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE--EEEEEEEEEEEEEEEEEEEEEEVRG 655
+ E +E E EEE E ++ E+ E+E+ EE E+ EE +E
Sbjct: 293 SGLKNSGEPSLKEIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLE 352
Query: 656 GGKEEISLHFYVL 668
++++ L
Sbjct: 353 EIQKKLEDLEKRL 365
Score = 30.4 bits (69), Expect = 3.0
Identities = 16/64 (25%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEE--EEEEEEEEEVQEEEEEEEEEEEE 639
EI R+ + +++ E+ E+E+ EE E+ EE +E +++E +++ E+ E+
Sbjct: 305 EIHEARLNEEERELKKKFTEKIREKEKRLEELEQNLIEERKELNSKLEEIQKKLEDLEKR 364
Query: 640 EEEE 643
E+
Sbjct: 365 LEKL 368
>gnl|CDD|233044 TIGR00600, rad2, DNA excision repair protein (rad2). All proteins
in this family for which functions are known are flap
endonucleases that generate the 3' incision next to DNA
damage as part of nucleotide excision repair. This
family is related to many other flap endonuclease
families including the fen1 family. This family is based
on the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1034
Score = 40.3 bits (94), Expect = 0.004
Identities = 18/74 (24%), Positives = 33/74 (44%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+D+ E + I+ R E E+ +E EE+ EEE++ ++ + E ++ EE
Sbjct: 681 TDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEE 740
Query: 638 EEEEEEEEEEEEEE 651
E E E+
Sbjct: 741 LEALEANLLAEQNS 754
Score = 38.3 bits (89), Expect = 0.014
Identities = 18/83 (21%), Positives = 32/83 (38%)
Query: 571 SIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
I+V S E+ P + E E +E E+ +E EE+
Sbjct: 660 FIEVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEHRKEIEDLLFDESEEDNIVGM 719
Query: 631 EEEEEEEEEEEEEEEEEEEEEEV 653
EEE++ ++ + E ++ EE
Sbjct: 720 IEEEKDADDFKNEWQDISLEELE 742
Score = 35.6 bits (82), Expect = 0.10
Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 571 SIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
++ K + + ++++ E + + + +E EE E +V E
Sbjct: 646 PMESEKEESESDGSFIEVDSVS---------STLELQVPSKSQPTDESEENAENKVASIE 696
Query: 631 EEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E +E E+ +E EE+ + K+
Sbjct: 697 GEHRKEIEDLLFDESEEDNIVGMIEEEKD 725
Score = 32.9 bits (75), Expect = 0.72
Identities = 18/82 (21%), Positives = 30/82 (36%), Gaps = 16/82 (19%)
Query: 598 GEREEEEEEEEEE----------EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE-- 645
E E+EE E + E + + + + EE E + E E +E
Sbjct: 645 EPMESEKEESESDGSFIEVDSVSSTLELQVPSKSQPTDESEENAENKVASIEGEHRKEIE 704
Query: 646 ----EEEEEEEVRGGGKEEISL 663
+E EE+ + G +EE
Sbjct: 705 DLLFDESEEDNIVGMIEEEKDA 726
Score = 30.6 bits (69), Expect = 3.0
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
Query: 584 GSPRIENIIQLIRRGEREEEE---EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
G R E L E + EEE++ ++ + E ++ EE E E+ +
Sbjct: 697 GEHRKEIEDLLFDESEEDNIVGMIEEEKDADDFKNEWQDISLEELEALEANLLAEQNSLK 756
Query: 641 EEEEEEEEEEEEVRG 655
++++++ EV G
Sbjct: 757 AQKQQQKRIAAEVTG 771
>gnl|CDD|218598 pfam05470, eIF-3c_N, Eukaryotic translation initiation factor 3
subunit 8 N-terminus. The largest of the mammalian
translation initiation factors, eIF3, consists of at
least eight subunits ranging in mass from 35 to 170 kDa.
eIF3 binds to the 40 S ribosome in an early step of
translation initiation and promotes the binding of
methionyl-tRNAi and mRNA.
Length = 593
Score = 40.2 bits (94), Expect = 0.004
Identities = 20/60 (33%), Positives = 38/60 (63%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E+EEEEE+E+++++ ++E+E+E+ V EE E + +E++EE+E+ K
Sbjct: 136 ESEDEEEEEDEDDDDDGSDDEDEDEDGVGATEEVAASSESGVDRVKEDDEEDEDADLSKK 195
>gnl|CDD|222977 PHA03089, PHA03089, late transcription factor VLTF-4; Provisional.
Length = 191
Score = 38.6 bits (90), Expect = 0.004
Identities = 16/72 (22%), Positives = 32/72 (44%)
Query: 572 IKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
I KTS + + + + + ++ + +EE E EE + EE EE +++ E +
Sbjct: 45 IPSKKTSKKKKTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPK 104
Query: 632 EEEEEEEEEEEE 643
+ E E+
Sbjct: 105 VQNTAAEVNHED 116
Score = 35.2 bits (81), Expect = 0.054
Identities = 12/50 (24%), Positives = 27/50 (54%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+++++E+EE E EE + EE +E +++ + E + + E E+
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHED 116
Score = 35.2 bits (81), Expect = 0.060
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+++++E+EE E EE + E EE +++ + E + + E E+V
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDV 117
Score = 34.4 bits (79), Expect = 0.10
Identities = 11/51 (21%), Positives = 27/51 (52%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ +++++E+EE E EE + EE + +++ + E + + E E+
Sbjct: 66 KTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHED 116
Score = 32.9 bits (75), Expect = 0.30
Identities = 11/52 (21%), Positives = 27/52 (51%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
+++++E+EE E +E + EE EE +++ + E + + E++
Sbjct: 67 TKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEVNHEDVI 118
Score = 31.3 bits (71), Expect = 1.1
Identities = 14/58 (24%), Positives = 34/58 (58%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ R+++ ++ +++++E+EE E EE+ + EE EE +++ + E + + EV
Sbjct: 55 KTTPRKKKTTKKTKKKKKEKEEVPELAAEELSDSEENEENDKKVDYELPKVQNTAAEV 112
>gnl|CDD|147845 pfam05914, RIB43A, RIB43A. This family consists of several
RIB43A-like eukaryotic proteins. Ciliary and flagellar
microtubules contain a specialised set of
protofilaments, termed ribbons, that are composed of
tubulin and several associated proteins. RIB43A was
first characterized in the unicellular biflagellate,
Chlamydomonas reinhardtii although highly related
sequences are present in several higher eukaryotes
including humans. The function of this protein is
unknown although the structure of RIB43A and its
association with the specialised protofilament ribbons
and with basal bodies is relevant to the proposed role
of ribbons in forming and stabilising doublet and
triplet microtubules and in organising their
three-dimensional structure. Human RIB43A homologues
could represent a structural requirement in centriole
replication in dividing cells.
Length = 379
Score = 39.6 bits (93), Expect = 0.004
Identities = 14/58 (24%), Positives = 31/58 (53%), Gaps = 1/58 (1%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ IR+G +E++ +E+E EEE+ E+E + + + + E +E +E ++
Sbjct: 282 LAAIRKG-QEQQLQEKERRREEEQLREKEWDRQAINQARAAVLLERQERRLRKELRKQ 338
Score = 33.1 bits (76), Expect = 0.43
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+G E+ + +E++ +E+E EEE E+E + + + E +E +R
Sbjct: 275 KGMSPEQLAAIRKGQEQQLQEKERRREEEQLREKEWDRQAINQARAAVLLERQERRLR 332
>gnl|CDD|237799 PRK14715, PRK14715, DNA polymerase II large subunit; Provisional.
Length = 1627
Score = 40.2 bits (94), Expect = 0.004
Identities = 21/57 (36%), Positives = 36/57 (63%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
+E +E++EE++EE+ EE + EE +EE +EEE+ E E+ E ++ +EV G
Sbjct: 277 KELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKKFIKEVIAG 333
Score = 39.4 bits (92), Expect = 0.006
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
D++G + + +L + E ++EE+ EE + EE +EE EEEE+ E E+ E
Sbjct: 266 DKLGIEGWDWLKELKEKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
Score = 37.1 bits (86), Expect = 0.032
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 1/46 (2%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E++EE++EE+ EEV + EE +EE EEEE+ E E+ + K
Sbjct: 281 EKKEEKDEEKSEEV-KTEEVDEEFEEEEKGFYYELYEKVNIEANKK 325
Score = 37.1 bits (86), Expect = 0.036
Identities = 20/52 (38%), Positives = 32/52 (61%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E++EE++EE+ EE + +E +EE EEEE+ E E+ E + KE I+
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIEANKKFIKEVIA 332
Score = 36.7 bits (85), Expect = 0.043
Identities = 18/41 (43%), Positives = 26/41 (63%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E++EE++EE+ EE + EE +EE EEEE E E+ E
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELYEKVNIE 321
Score = 31.4 bits (71), Expect = 2.1
Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFY 666
++E +E++EE++EE+ EE + EE +EE EE FY
Sbjct: 276 LKELKEKKEEKDEEKSEEVKTEEVDEE-----FEEEEKGFY 311
Score = 29.8 bits (67), Expect = 5.8
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 635 EEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYVLY 669
E++EE++EE+ EE + EEV +EE +Y LY
Sbjct: 281 EKKEEKDEEKSEEVKTEEVDEEFEEEEKGFYYELY 315
>gnl|CDD|214923 smart00937, PCRF, This domain is found in peptide chain release
factors.
Length = 116
Score = 37.1 bits (87), Expect = 0.004
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E EEEE++E E EEE EE++ E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 36.3 bits (85), Expect = 0.008
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E EEEE++E E EEE++E E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 35.9 bits (84), Expect = 0.013
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E EEEE++E E +EE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 35.1 bits (82), Expect = 0.021
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
E EEEE++E E EEE EE E E++EE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 35.1 bits (82), Expect = 0.022
Identities = 19/36 (52%), Positives = 24/36 (66%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E EEEE++E++E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 35.1 bits (82), Expect = 0.022
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E EEEE++E E EEE EE E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.039
Identities = 19/36 (52%), Positives = 19/36 (52%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E EEEE E E EEE EE E E EEE EE
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.040
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
EEE++E E EEE EE E E EEE++E +
Sbjct: 4 EEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 34.4 bits (80), Expect = 0.047
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E EEEE++E + EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 33.6 bits (78), Expect = 0.082
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
E EEEE++E E EEE EE E + EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 33.2 bits (77), Expect = 0.098
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E EEEE++E E EEE EE E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 32.8 bits (76), Expect = 0.13
Identities = 19/36 (52%), Positives = 23/36 (63%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E EEEE++E E+ EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 32.8 bits (76), Expect = 0.14
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
E EEEE++E E EEE EE E E E + EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 32.4 bits (75), Expect = 0.18
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E EEEE+ + E EEE EE E E EEE EE ++
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKLL 37
Score = 32.0 bits (74), Expect = 0.24
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EEEE++ E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 32.0 bits (74), Expect = 0.24
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E EEEE++E E EEE + E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 31.7 bits (73), Expect = 0.33
Identities = 18/36 (50%), Positives = 21/36 (58%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E EEEE++E EEE EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 31.3 bits (72), Expect = 0.47
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E EEEE++E E +E EE E E EEE EE +
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEELEELLKL 36
Score = 28.2 bits (64), Expect = 5.1
Identities = 15/35 (42%), Positives = 19/35 (54%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EEEE++E E EEE EE E E E ++ L
Sbjct: 4 EEEEDDEMRELAEEELEELEAELEEELEELLKLLL 38
Score = 28.2 bits (64), Expect = 6.5
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 632 EEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E EEEE++E E EEE EE+ +EE+
Sbjct: 1 ELLEEEEDDEMRELAEEELEELEAELEEEL 30
>gnl|CDD|227519 COG5192, BMS1, GTP-binding protein required for 40S ribosome
biogenesis [Translation, ribosomal structure and
biogenesis].
Length = 1077
Score = 40.1 bits (93), Expect = 0.005
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 13/114 (11%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
K S ++ S ++ GE EE +++E+ E+ E+EE + E++E
Sbjct: 569 KWSSLAQLKSRFQKDATLDSIEGE-EELIQDDEKGNFEDLEDEENSSDNEMEESRGSSVT 627
Query: 636 EEEEEEEEEEEEEEEEEVRGGGKEEISLHF------------YVLYVLSKGKIA 677
E EE +E + E E E KEE+ +F Y K KI
Sbjct: 628 AENEESADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIE 681
Score = 36.3 bits (83), Expect = 0.057
Identities = 22/78 (28%), Positives = 35/78 (44%), Gaps = 3/78 (3%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E EE ++EE E EE + E ++ + EE+ + EE+ + E E + +
Sbjct: 640 ETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRSEFETMVPESR 699
Query: 659 EEISLHF---YVLYVLSK 673
I + YV VLS
Sbjct: 700 VVIEGYRAGRYVRIVLSH 717
Score = 32.0 bits (72), Expect = 1.4
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E +E + E E EE ++EE + EE + E+++ + EE+ + EE+++
Sbjct: 632 ESADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLK 685
Score = 31.6 bits (71), Expect = 1.9
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EE +E + E E EE ++EE E EE + E+++ + EE+ + EE
Sbjct: 629 ENEESADEVDYETEREENARKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEE 682
Score = 31.2 bits (70), Expect = 2.0
Identities = 16/60 (26%), Positives = 34/60 (56%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
RE+ E ++ +E +++EE+E E +Q +EEE ++E+E E+ + + + K+
Sbjct: 1012 REKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKK 1071
Score = 30.5 bits (68), Expect = 4.4
Identities = 14/54 (25%), Positives = 30/54 (55%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E+ E ++ +E +++EE+E E + +EEE ++E+E E+ + +
Sbjct: 1010 ECREKHEIKDRIVKERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHD 1063
Score = 30.1 bits (67), Expect = 4.9
Identities = 12/51 (23%), Positives = 30/51 (58%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E +++EE+E E + +EEE+ ++E+E E+ + + +E ++ ++
Sbjct: 1024 ERIKDQEEKERMESLQRAKEEEIGKKEKEREQRIRKTIHDNYKEMAKKRLK 1074
Score = 29.3 bits (65), Expect = 9.8
Identities = 16/61 (26%), Positives = 26/61 (42%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
R+ E E EE + E+++ + EE+ + EE+ + E E E E R
Sbjct: 648 RKKEELRGNFELEERGDPEKKDVDWYTEEKRKIEEQLKINRSEFETMVPESRVVIEGYRA 707
Query: 656 G 656
G
Sbjct: 708 G 708
>gnl|CDD|221389 pfam12037, DUF3523, Domain of unknown function (DUF3523). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 257 to 277 amino acids in length. This domain is
found associated with pfam00004. This domain has a
conserved LER sequence motif.
Length = 276
Score = 39.0 bits (91), Expect = 0.005
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 2/81 (2%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
QDE+ R + +L ++ + EE + +EE +E EEE+ E E EEE E
Sbjct: 112 QDELARKRYQK--ELEQQRRQNEELLKMQEESVLRQEAMRRATEEEILEMRRETIEEEAE 169
Query: 640 EEEEEEEEEEEEEVRGGGKEE 660
E E + E E RG KEE
Sbjct: 170 LERENIRAKIEAEARGRAKEE 190
Score = 32.4 bits (74), Expect = 0.71
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 4/65 (6%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE----EEEEEEEEEEEEVRG 655
R+E EEE E E EEE E++ E + E E EE E E+ E ++
Sbjct: 144 RQEAMRRATEEEILEMRRETIEEEAELERENIRAKIEAEARGRAKEERENEDINREMLKL 203
Query: 656 GGKEE 660
EE
Sbjct: 204 KANEE 208
Score = 32.0 bits (73), Expect = 0.75
Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 3/61 (4%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE---EEEEEEEEEEEEEEEEEEEE 651
+RR EE E E EEE E E E +++ E +EE E E+ E + + E
Sbjct: 148 MRRATEEEILEMRRETIEEEAELERENIRAKIEAEARGRAKEERENEDINREMLKLKANE 207
Query: 652 E 652
E
Sbjct: 208 E 208
Score = 29.0 bits (65), Expect = 7.9
Identities = 19/55 (34%), Positives = 24/55 (43%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
I RE EEE E E E + E E +EE E E+ E + + EE E
Sbjct: 156 ILEMRRETIEEEAELERENIRAKIEAEARGRAKEERENEDINREMLKLKANEERE 210
Score = 29.0 bits (65), Expect = 8.1
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 5/67 (7%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E I +RR E EEE E E E + E E + +EE E E+ E + +
Sbjct: 151 ATEEEILEMRR-----ETIEEEAELERENIRAKIEAEARGRAKEERENEDINREMLKLKA 205
Query: 647 EEEEEEV 653
EE E V
Sbjct: 206 NEERETV 212
>gnl|CDD|236154 PRK08119, PRK08119, flagellar motor switch protein; Validated.
Length = 382
Score = 39.5 bits (93), Expect = 0.005
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EEEEEEEE EEEE + E Q ++E+++ + +E E+E + V
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPV 277
Score = 39.1 bits (92), Expect = 0.007
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EEEEEEE EEEE + E + ++E+++ + +E E+E + V
Sbjct: 227 EEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNV 279
Score = 37.9 bits (89), Expect = 0.014
Identities = 17/52 (32%), Positives = 28/52 (53%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
GE EEEEEE EEEE + E + ++E+++ + +E E+E +
Sbjct: 225 GEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQP 276
Score = 37.1 bits (87), Expect = 0.025
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
EEEEEEEE EEEE + E + ++E+++ + +E + +
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQ 280
Score = 35.6 bits (83), Expect = 0.081
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EEEEEEEE EEEE + + + ++E+++ + +E E
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKE 273
Score = 35.2 bits (82), Expect = 0.094
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EEEEEEEE EEEE + + ++E+++ + +E E+
Sbjct: 226 EEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEA 274
Score = 35.2 bits (82), Expect = 0.095
Identities = 15/61 (24%), Positives = 28/61 (45%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
L+ E EEEE EEEE + E + ++E+++ + +E E+E + +
Sbjct: 222 ILLGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQPVNVQP 281
Query: 653 V 653
Sbjct: 282 A 282
Score = 34.8 bits (81), Expect = 0.12
Identities = 15/59 (25%), Positives = 30/59 (50%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++ ++ E EEEEE EEEE + E + ++E+++ + +E E+E +
Sbjct: 218 ELVAILLGEEEEEEEEVEEEEAQASPAAEPATAQAAPAPKQEQQQAPPQRQEPEKEAQP 276
>gnl|CDD|220785 pfam10498, IFT57, Intra-flagellar transport protein 57. Eukaryotic
cilia and flagella are specialised organelles found at
the periphery of cells of diverse organisms.
Intra-flagellar transport (IFT) is required for the
assembly and maintenance of eukaryotic cilia and
flagella, and consists of the bidirectional movement of
large protein particles between the base and the distal
tip of the organelle. IFT particles contain multiple
copies of two distinct protein complexes, A and B, which
contain at least 6 and 11 protein subunits. IFT57 is
part of complex B but is not, however, required for the
core subunits to stay associated. This protein is known
as Huntington-interacting protein-1 in humans.
Length = 355
Score = 39.3 bits (92), Expect = 0.005
Identities = 18/58 (31%), Positives = 33/58 (56%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+R + EE+EEE +E++ E EE EEEV+ EE +++E +E + + + +
Sbjct: 121 FKRPKYPNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQ 178
Score = 38.1 bits (89), Expect = 0.010
Identities = 17/37 (45%), Positives = 23/37 (62%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE+EEE V E++ E EE EEE E EE +++E
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGT 163
Score = 37.0 bits (86), Expect = 0.026
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EE+EEE +E++ EE EEE E EE +++E +E + RG
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSL 175
Score = 37.0 bits (86), Expect = 0.032
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
EE+EEE +E++ + EE EEE E EE +++E +E + + G
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTP 177
Score = 35.8 bits (83), Expect = 0.070
Identities = 16/55 (29%), Positives = 31/55 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE+EEE +E++ E EE EEE E++E +++E +E + + + + +
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKD 181
Score = 34.3 bits (79), Expect = 0.22
Identities = 15/56 (26%), Positives = 30/56 (53%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E+EEE +E++ E EE EEE E + +++E +E + + + + ++V
Sbjct: 127 PNEEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDV 182
Score = 32.0 bits (73), Expect = 1.1
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 6/89 (6%)
Query: 565 LKTIRPSIKVWK-TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE 623
LK S K K +++DE EN+ + EE EEE E EE +++E +E +
Sbjct: 114 LKKKGFSFKRPKYPNEEDEE-----ENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKY 168
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + ++ E + E + E E
Sbjct: 169 KRGDTSLTPQAKDVLESLIDAAEWKLEVE 197
Score = 29.7 bits (67), Expect = 5.6
Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 598 GEREEEEEEEEEEE---EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E EEE +E++ E EE EEE E EE ++ + +E + + + + ++ E +
Sbjct: 129 EEDEEENVDEDDAEIILEEVEEEVEIEEVDDDEGTQETKYKRGDTSLTPQAKDVLESLI 187
>gnl|CDD|219461 pfam07543, PGA2, Protein trafficking PGA2. A Saccharomyces
cerevisiae member of this family (PGA2) is an ER protein
which has been implicated in protein trafficking.
Length = 139
Score = 37.5 bits (87), Expect = 0.005
Identities = 18/69 (26%), Positives = 31/69 (44%), Gaps = 4/69 (5%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEE----EEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
I+ G + +E+E E+E E EE E++ EE+ ++EE+EE+
Sbjct: 34 FIKLGAKAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEEDFATP 93
Query: 650 EEEVRGGGK 658
+ G K
Sbjct: 94 SAVPQWGKK 102
Score = 34.8 bits (80), Expect = 0.045
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 12/67 (17%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEE------------EEEEEVQEEEEEEEEEEEEEEEEE 644
RG EE+ ++EE+EE+ + + +V + E EE+ E++ ++
Sbjct: 69 RGGATAGHGEEDTDDEEDEEDFATPSAVPQWGKKARKRQRKVIRKLLEAEEQLREDQYDD 128
Query: 645 EEEEEEE 651
E+E+ EE
Sbjct: 129 EDEDIEE 135
Score = 29.0 bits (65), Expect = 4.4
Identities = 16/63 (25%), Positives = 28/63 (44%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
LIR + + +E+E E+E E EE E++ + EE+ ++EE+E
Sbjct: 29 LIRPYFIKLGAKAQEKEHEKERAEREEAREKKAKISPNALRGGATAGHGEEDTDDEEDEE 88
Query: 654 RGG 656
Sbjct: 89 DFA 91
>gnl|CDD|219746 pfam08208, RNA_polI_A34, DNA-directed RNA polymerase I subunit
RPA34.5. This is a family of proteins conserved from
yeasts to human. Subunit A34.5 of RNA polymerase I is a
non-essential subunit which is thought to help Pol I
overcome topological constraints imposed on ribosomal
DNA during the process of transcription.
Length = 193
Score = 38.2 bits (89), Expect = 0.005
Identities = 18/60 (30%), Positives = 38/60 (63%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E E E+E + E+E EV+EEE++E+++++E ++E++E+++++E K
Sbjct: 124 PPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
Score = 35.1 bits (81), Expect = 0.057
Identities = 17/56 (30%), Positives = 32/56 (57%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ E E E E+E + E+E E EEEE++E+++++E ++E+ K+E
Sbjct: 120 APDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKE 175
Score = 35.1 bits (81), Expect = 0.062
Identities = 18/55 (32%), Positives = 37/55 (67%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E E E+E + E+E E EEEE +E+++++E ++E++E+++++E+ E
Sbjct: 126 SELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEP 180
Score = 34.3 bits (79), Expect = 0.12
Identities = 15/51 (29%), Positives = 31/51 (60%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E E E E+E + +E E EEEE++E+++++E ++E++E+
Sbjct: 120 APDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEK 170
Score = 33.2 bits (76), Expect = 0.28
Identities = 17/62 (27%), Positives = 41/62 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E E+E + E+E E EEEE++ +++++E ++E++E+++++E+ E + + K
Sbjct: 129 GSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSKKKKK 188
Query: 659 EE 660
++
Sbjct: 189 KK 190
Score = 33.2 bits (76), Expect = 0.29
Identities = 18/61 (29%), Positives = 39/61 (63%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E E+E + E+E E EEE ++E+++++E ++E++E+++++E+ E +G
Sbjct: 125 PSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGSK 184
Query: 658 K 658
K
Sbjct: 185 K 185
Score = 32.8 bits (75), Expect = 0.35
Identities = 15/51 (29%), Positives = 30/51 (58%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E E E E+E E+E E EEEE++E+++++E ++E++ +
Sbjct: 120 APDGPPSELGSESETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEK 170
Score = 30.8 bits (70), Expect = 1.7
Identities = 16/51 (31%), Positives = 37/51 (72%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E+E + E+E E EEEE++E+++++EV++E++E+++++E+ E +
Sbjct: 133 ETSEKETTAKVEKEAEVEEEEKKEKKKKKEVKKEKKEKKDKKEKMVEPKGS 183
>gnl|CDD|173965 cd08045, TAF4, TATA Binding Protein (TBP) Associated Factor 4
(TAF4) is one of several TAFs that bind TBP and is
involved in forming Transcription Factor IID (TFIID)
complex. The TATA Binding Protein (TBP) Associated
Factor 4 (TAF4) is one of several TAFs that bind TBP and
are involved in forming the Transcription Factor IID
(TFIID) complex. TFIID is one of seven General
Transcription Factors (GTF) (TFIIA, TFIIB, TFIID, TFIIE,
TFIIF, and TFIID) that are involved in accurate
initiation of transcription by RNA polymerase II in
eukaryote. TFIID plays an important role in the
recognition of promoter DNA and assembly of the
pre-initiation complex. TFIID complex is composed of the
TBP and at least 13 TAFs. TAFs from various species were
originally named by their predicted molecular weight or
their electrophoretic mobility in polyacrylamide gels. A
new, unified nomenclature for the pol II TAFs has been
suggested to show the relationship between TAF orthologs
and paralogs. Several hypotheses are proposed for TAFs
functions such as serving as activator-binding sites,
core-promoter recognition or a role in essential
catalytic activity. Each TAF, with the help of a
specific activator, is required only for the expression
of subset of genes and is not universally involved for
transcription as are GTFs. In yeast and human cells,
TAFs have been found as components of other complexes
besides TFIID. Several TAFs interact via histone-fold
(HFD) motifs; HFD is the interaction motif involved in
heterodimerization of the core histones and their
assembly into nucleosome octamers. The minimal HFD
contains three alpha-helices linked by two loops and is
found in core histones, TAFS and many other
transcription factors. TFIID has a histone octamer-like
substructure. TAF4 domain interacts with TAF12 and makes
a novel histone-like heterodimer that binds DNA and has
a core promoter function of a subset of genes.
Length = 212
Score = 38.5 bits (90), Expect = 0.005
Identities = 17/48 (35%), Positives = 32/48 (66%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+ E EEEE+ +EEE E ++ + E+ +++ +E ++EE+EE+R
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEEMR 167
Score = 38.1 bits (89), Expect = 0.008
Identities = 16/46 (34%), Positives = 29/46 (63%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E+ E EEEE+ +EEE E + + E+ +++ +E ++EE+EE
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 37.7 bits (88), Expect = 0.011
Identities = 17/50 (34%), Positives = 29/50 (58%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+R E+ E EEEE+ +EEE E + Q +++ +E ++EE+EE
Sbjct: 116 LRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 36.5 bits (85), Expect = 0.023
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E+ E EEEE+ +EEE E E+ +++ +E ++EE+EE
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 36.2 bits (84), Expect = 0.031
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
QL + E EEEE+ +EEE E + E +++ +E ++EE+EE
Sbjct: 115 QLRFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 36.2 bits (84), Expect = 0.033
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E+ E EEEE+ +EEE E + E+ +++ +E ++EE+EE
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 36.2 bits (84), Expect = 0.034
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E+ E EEEE+ +EEE E + E+ +++ +E ++EE+EE
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 35.8 bits (83), Expect = 0.048
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E+ E EEEE+ +EEE E + E+ +++ +E ++EE+EE
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 35.4 bits (82), Expect = 0.057
Identities = 16/46 (34%), Positives = 28/46 (60%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+ E EEEE+ +EEE E + E+ +++ +E ++EE+EE
Sbjct: 120 EQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
Score = 31.9 bits (73), Expect = 0.85
Identities = 13/49 (26%), Positives = 26/49 (53%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
++ + R E E+ +EEE E + E+ + + +E ++EE+EE
Sbjct: 117 RFLEQLEREEEEKRDEEERERLLRAAKSRSEQSRLKQKAKEMQKEEDEE 165
>gnl|CDD|218336 pfam04935, SURF6, Surfeit locus protein 6. The surfeit locus
protein SURF-6 is shown to be a component of the
nucleolar matrix and has a strong binding capacity for
nucleic acids.
Length = 206
Score = 38.4 bits (90), Expect = 0.005
Identities = 12/63 (19%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
S R +++ RR + + ++++ +E +++E+ ++ E E + EE + +++ E
Sbjct: 2 SSREA-LLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENA 60
Query: 645 EEE 647
E
Sbjct: 61 EGN 63
Score = 38.1 bits (89), Expect = 0.007
Identities = 11/55 (20%), Positives = 31/55 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
RE E+ + E+ + ++++ +E ++E+ ++ E EE + EE + +++ +
Sbjct: 3 SREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPI 57
Score = 35.0 bits (81), Expect = 0.069
Identities = 10/52 (19%), Positives = 30/52 (57%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
R + E+ + ++++ +E +++E+ ++ + EE + EE + +++ E E
Sbjct: 12 RRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAEGN 63
Score = 35.0 bits (81), Expect = 0.077
Identities = 10/49 (20%), Positives = 27/49 (55%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E+ + E+ + ++++ +E +++E+ ++ E EE + EE +
Sbjct: 2 SSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKS 50
Score = 34.6 bits (80), Expect = 0.091
Identities = 11/53 (20%), Positives = 30/53 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+ + E+ + ++++ +E +++E+ + E EE + EE + +++ E E
Sbjct: 9 EQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIENAE 61
Score = 34.6 bits (80), Expect = 0.11
Identities = 11/58 (18%), Positives = 30/58 (51%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E+ + E+ + +++ ++E +++E+ ++ E EE + EE + + + E
Sbjct: 2 SSREALLEQRRRKREQRKARKKQKRKEAKKKEDAQKSEAEEVKNEENKSKKKAAPIEN 59
>gnl|CDD|223497 COG0420, SbcD, DNA repair exonuclease [DNA replication,
recombination, and repair].
Length = 390
Score = 39.4 bits (92), Expect = 0.005
Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 9/131 (6%)
Query: 536 TPEDFKPFVTALMNSEWQSL------WDNVPNTNKLK-TIRPSIKVWKTSDQDEIGSPRI 588
P + V L + + ++ + ++ TI + ++ I +
Sbjct: 261 VPLFERLEVDVLNGEDLEDELLKLDREEDAKDEPVVRLTIEGETDILDERLKERILALYE 320
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ ER + EE E E EE E + EE EE +E + E EEE E
Sbjct: 321 RIERLELLLEERATDLAEEPESSELEELLSELDVEEAF--EELLADEVLLDRESEEELEA 378
Query: 649 EEEEVRGGGKE 659
EE+ E
Sbjct: 379 ALEELLELLDE 389
>gnl|CDD|224680 COG1766, fliF, Flagellar basal body M-ring protein [Cell motility
and secretion].
Length = 545
Score = 39.7 bits (93), Expect = 0.006
Identities = 18/59 (30%), Positives = 29/59 (49%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+IR R E E EEE + EEE+ EE+++ +E+ +EE+ +E E
Sbjct: 464 PVIRPRRRRGAEALEAAEEERQGPEEEDVLPEEIRDSNDEQLGLGDEEQRRGKEVLLER 522
Score = 39.3 bits (92), Expect = 0.006
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE-----EEEVQEEEEEEEEEEEEEEEEEE 645
+I+ RR E E EEE + EEE+ EE +E++ +EE+ +E E
Sbjct: 465 VIRPRRRRGAEALEAAEEERQGPEEEDVLPEEIRDSNDEQLGLGDEEQRRGKEVLLERLR 524
Query: 646 E--EEEEEEV 653
E +E+ E V
Sbjct: 525 EMAKEDPERV 534
Score = 31.2 bits (71), Expect = 1.8
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E E EEE Q EEE+ EE + +E+ +E + GKE +
Sbjct: 473 GAEALEAAEEERQGPEEEDVLPEEIRDSNDEQLGLGDEEQRRGKEVL 519
>gnl|CDD|224114 COG1193, COG1193, Mismatch repair ATPase (MutS family) [DNA
replication, recombination, and repair].
Length = 753
Score = 39.6 bits (93), Expect = 0.006
Identities = 17/79 (21%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E + +LI + E +E EEE EE E+ +E E + E + +
Sbjct: 500 GEEKELLEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKTSLLELKAQIVVLA 559
Query: 645 EEEEEE--EEVRGGGKEEI 661
EE + +E+
Sbjct: 560 HMGLPVPAEEAKVEAVDEV 578
Score = 36.2 bits (84), Expect = 0.070
Identities = 27/80 (33%), Positives = 37/80 (46%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
G P N + R E EE + E EE+E EE E+++E +E EEE EE E
Sbjct: 469 LEGVPGRSNAFDIALRLGLPEPIIEEAKTEFGEEKELLEELIEKLEEVRKELEEELEEVE 528
Query: 642 EEEEEEEEEEEVRGGGKEEI 661
+ +E E GGK +
Sbjct: 529 KLLDEVELLTGANSGGKTSL 548
Score = 32.3 bits (74), Expect = 1.1
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 10/73 (13%)
Query: 589 ENIIQLIRRGEREEEEE---------EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E II+ + E EE+E EE +E EEE EE E+ +EV+ +
Sbjct: 489 EPIIEEAK-TEFGEEKELLEELIEKLEEVRKELEEELEEVEKLLDEVELLTGANSGGKTS 547
Query: 640 EEEEEEEEEEEEE 652
E + +
Sbjct: 548 LLELKAQIVVLAH 560
>gnl|CDD|218555 pfam05320, Pox_RNA_Pol_19, Poxvirus DNA-directed RNA polymerase 19
kDa subunit. This family contains several DNA-directed
RNA polymerase 19 kDa polypeptides. The Poxvirus
DNA-directed RNA polymerase (EC: 2.7.7.6) catalyzes
DNA-template-directed extension of the 3'-end of an RNA
strand by one nucleotide at a time.
Length = 167
Score = 37.8 bits (88), Expect = 0.006
Identities = 17/55 (30%), Positives = 30/55 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E ++++ EE EEEEE+EE+ E E +V ++ + E E E+ ++V
Sbjct: 11 ESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASENIEDATSNPKQV 65
Score = 35.5 bits (82), Expect = 0.034
Identities = 12/32 (37%), Positives = 23/32 (71%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+ +++ + E ++++ EE EEEEE+EE+ E
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESL 33
Score = 35.5 bits (82), Expect = 0.042
Identities = 13/37 (35%), Positives = 24/37 (64%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E+ ++ + ++++ EE EEEEE+EE+ E E +V
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDV 38
Score = 34.7 bits (80), Expect = 0.070
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE-----EEEEEEEEEEEEEEEEEEV 653
E ++ + E ++++ EE EEEEE+EE E E + + + E E E+
Sbjct: 2 EDSDDIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASENIEDATSN 61
Query: 654 R 654
Sbjct: 62 P 62
Score = 32.8 bits (75), Expect = 0.33
Identities = 14/48 (29%), Positives = 24/48 (50%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+ + EE EEEEE+EE+ E E + +++ + E E E+
Sbjct: 13 DDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASENIEDATS 60
Score = 29.7 bits (67), Expect = 3.5
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 631 EEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
+ E ++++ EE EEEEE+EE+ ++S
Sbjct: 8 IDYESDDDDSEEYEEEEEDEEDAESLESSDVS 39
Score = 29.3 bits (66), Expect = 3.7
Identities = 17/56 (30%), Positives = 25/56 (44%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
++II + EE EEEEE+EE+ E E + Q + E E E+
Sbjct: 5 DDIIDYESDDDDSEEYEEEEEDEEDAESLESSDVSSLKQSNYKIESASENIEDATS 60
>gnl|CDD|150531 pfam09871, DUF2098, Uncharacterized protein conserved in archaea
(DUF2098). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 91
Score = 36.1 bits (84), Expect = 0.006
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
++ +E++EE +++EE E ++EEE E+ + GGG
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAGCGGGG 91
Score = 34.6 bits (80), Expect = 0.022
Identities = 11/37 (29%), Positives = 23/37 (62%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
++ +E++EE EE++EE E ++EEE ++ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 34.2 bits (79), Expect = 0.033
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
++ +E++EE EE++EE E +++EEE E+ +
Sbjct: 50 DKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 33.0 bits (76), Expect = 0.074
Identities = 12/44 (27%), Positives = 25/44 (56%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
+ +++ + + ++EE EE++EE E ++EEE E+V
Sbjct: 43 TDYLEVTDKVKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 30.4 bits (69), Expect = 0.66
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+E++EE EE++EE E ++EEE E+ +
Sbjct: 52 VKEKKEEREEDKEELIERIKKEEETFEDVDLGSAG 86
Score = 28.4 bits (64), Expect = 3.7
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEV 626
+E ++ + E EE++EE E ++EEE E+ +
Sbjct: 46 LEVTDKVKEKKEEREEDKEELIERIKKEEETFEDVDLGS 84
Score = 27.3 bits (61), Expect = 7.5
Identities = 12/32 (37%), Positives = 22/32 (68%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ EV ++ +E++EE EE++EE E ++EE
Sbjct: 43 TDYLEVTDKVKEKKEEREEDKEELIERIKKEE 74
>gnl|CDD|191634 pfam06886, TPX2, Targeting protein for Xklp2 (TPX2). This family
represents a conserved region approximately 60 residues
long within the eukaryotic targeting protein for Xklp2
(TPX2). Xklp2 is a kinesin-like protein localised on
centrosomes throughout the cell cycle and on spindle
pole microtubules during metaphase. In Xenopus, it has
been shown that Xklp2 protein is required for centrosome
separation and maintenance of spindle bi-polarity. TPX2
is a microtubule-associated protein that mediates the
binding of the C-terminal domain of Xklp2 to
microtubules. It is phosphorylated during mitosis in a
microtubule-dependent way.
Length = 57
Score = 35.1 bits (81), Expect = 0.007
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+E E+ E +++++E+E+ E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 35.1 bits (81), Expect = 0.008
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+E E+ E ++ EE+E+ E E+EE E ++EEEEE ++
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIK 44
Score = 33.9 bits (78), Expect = 0.020
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+ E+ E +++ EE+E+ E E+EE + ++EEEEE
Sbjct: 2 HSDERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 33.5 bits (77), Expect = 0.021
Identities = 16/39 (41%), Positives = 25/39 (64%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E E+ E +++ EE+E E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 33.5 bits (77), Expect = 0.023
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
ER E+ E +++ EE+E+ E E+EE ++EEEEE
Sbjct: 2 HSDERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 33.5 bits (77), Expect = 0.024
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+E E+ E +++ EE+ + E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 33.5 bits (77), Expect = 0.028
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+E E+ E +++ EE ++ E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 33.1 bits (76), Expect = 0.037
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+E E+ E +++ EE+E+ E E +E E ++EEEEE
Sbjct: 2 HSDERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 32.7 bits (75), Expect = 0.039
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+E E+ E +++ EE+E+ E ++EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 32.7 bits (75), Expect = 0.043
Identities = 16/44 (36%), Positives = 29/44 (65%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+E E+ E +++ E +E+ E E+EE E ++EEEEE +++R
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEAIKQLR 47
Score = 32.4 bits (74), Expect = 0.057
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+E E+ E +++ EE+E+ E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 32.4 bits (74), Expect = 0.062
Identities = 15/39 (38%), Positives = 25/39 (64%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+E E+ E +++ EE+E+ E +EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 32.4 bits (74), Expect = 0.064
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
EE+E+ E E+EE E ++EEEEE +++
Sbjct: 18 EEKEKALEAEKEEAEARQKEEEEEAIKQ 45
Score = 31.6 bits (72), Expect = 0.12
Identities = 16/39 (41%), Positives = 26/39 (66%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+E E+ E +++ EE+E+ E E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 31.2 bits (71), Expect = 0.15
Identities = 13/31 (41%), Positives = 23/31 (74%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
E+E+ E E+EE E ++EEEEE +++++E
Sbjct: 19 EKEKALEAEKEEAEARQKEEEEEAIKQLRKE 49
Score = 30.8 bits (70), Expect = 0.25
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+E E+ E +++ EE+E+ ++ E+EE E ++EEEEE
Sbjct: 4 DERAEKRAEFDKKLEEKEKALEAEKEEAEARQKEEEEEA 42
Score = 29.7 bits (67), Expect = 0.64
Identities = 15/37 (40%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
+R E +++ EE+E+ E E+EE E ++EE EEE
Sbjct: 8 EKRAEFDKKLEEKEKALEAEKEEAEARQKEE--EEEA 42
>gnl|CDD|226513 COG4026, COG4026, Uncharacterized protein containing TOPRIM domain,
potential nuclease [General function prediction only].
Length = 290
Score = 38.7 bits (90), Expect = 0.007
Identities = 20/54 (37%), Positives = 33/54 (61%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ E + +E+ EE +E+ EE ++E+EE+ +E EE E E EE +E + E E
Sbjct: 125 QRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVE 178
Score = 38.0 bits (88), Expect = 0.010
Identities = 21/62 (33%), Positives = 35/62 (56%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
L+R G + + E + +E+ EE +E+ EE +E+EE +E EE E E EE +E + +
Sbjct: 116 LVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRL 175
Query: 654 RG 655
Sbjct: 176 EV 177
Score = 37.2 bits (86), Expect = 0.021
Identities = 20/60 (33%), Positives = 31/60 (51%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+ + L E +E+ EE ++E+EE +E EE E E +E +E + E E EE
Sbjct: 126 RVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEM 185
Score = 37.2 bits (86), Expect = 0.021
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE ++E+EE +E EE E E EEVQE + E E EE ++ E
Sbjct: 145 EELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVY 194
Score = 36.8 bits (85), Expect = 0.027
Identities = 23/79 (29%), Positives = 45/79 (56%), Gaps = 4/79 (5%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ E+ + + ++ ++R + +E+ EE +E+ EE ++E+EE ++E EE E E EE
Sbjct: 109 RKELKNALVRAGLKTLQRVPEYMDLKEDYEELKEKLEELQKEKEELLKELEELEAEYEEV 168
Query: 640 EEEEEEEEEE----EEEVR 654
+E + E E EE ++
Sbjct: 169 QERLKRLEVENSRLEEMLK 187
Score = 36.0 bits (83), Expect = 0.043
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
+ + EE +E+ EE ++E+EE +E EE++ E EE +E + E E EE + G
Sbjct: 134 KEDYEELKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPG 191
Score = 34.9 bits (80), Expect = 0.12
Identities = 17/62 (27%), Positives = 29/62 (46%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+L++ E E E EE +E + E E EE +++ E + ++ +E E E EE
Sbjct: 153 ELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEE 212
Query: 653 VR 654
Sbjct: 213 EL 214
Score = 33.7 bits (77), Expect = 0.26
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 597 RGEREEEEEEEEE--EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE-------- 646
+ + EE ++E+EE +E EE E E EE +E ++ E E EE ++ E
Sbjct: 141 KEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRW 200
Query: 647 EEEEEEVRGGGKEEIS 662
+E E V +E IS
Sbjct: 201 DELEPGVELPEEELIS 216
Score = 32.6 bits (74), Expect = 0.57
Identities = 14/76 (18%), Positives = 29/76 (38%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
Q+ + +EN + E + ++ +E E E EEE + + +E +
Sbjct: 169 QERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVKETLNLAPK 228
Query: 640 EEEEEEEEEEEEEVRG 655
+ E + E+E
Sbjct: 229 DIEGQGYIYAEDEKEV 244
Score = 32.6 bits (74), Expect = 0.67
Identities = 18/83 (21%), Positives = 34/83 (40%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++R E E EE ++ E + ++ +E++ E EEE + +E +++
Sbjct: 172 LKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPGVELPEEELISDLVKETLNLAPKDIE 231
Query: 655 GGGKEEISLHFYVLYVLSKGKIA 677
G G V +L IA
Sbjct: 232 GQGYIYAEDEKEVEILLGTVYIA 254
Score = 31.8 bits (72), Expect = 1.1
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ E ++E+EE +E EE E E EE +E + E E EE ++ E + + R
Sbjct: 140 LKEKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKR 199
>gnl|CDD|113290 pfam04514, BTV_NS2, Bluetongue virus non-structural protein NS2.
This family includes NS2 proteins from other members of
the Orbivirus genus. NS2 is a non-specific
single-stranded RNA-binding protein that forms large
homomultimers and accumulates in viral inclusion bodies
of infected cells. Three RNA binding regions have been
identified in Bluetongue virus serotype 17 at residues
2-11, 153-166 and 274-286. NS2 multimers also possess
nucleotidyl phosphatase activity. The precise function
of NS2 is not known, but it may be involved in the
transport and condensation of viral mRNAs.
Length = 363
Score = 39.1 bits (91), Expect = 0.007
Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 1/103 (0%)
Query: 542 PFVTALMNSEWQSLWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGERE 601
P A W D+ + N L P +TS QD+ R +L E
Sbjct: 173 PMKPAFKPERWMGGPDSDEDENPLDEEAPD-MTPETSKQDQKEERRAAVERRLAELVEMI 231
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
EE + +E+E EE E + +E+E E+ E+ E + E
Sbjct: 232 NWNLEERRRDLRKEQELEENVERDSDDEDEHGEDSEDGETKPE 274
Score = 37.9 bits (88), Expect = 0.016
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 2/80 (2%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
DE + ++ ER E E E EE ++++E+E EE E +
Sbjct: 197 DEEAPDMTPETSKQDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDS 256
Query: 641 EEEEEEEEEEEEVRGGGKEE 660
++E+E E+ E+ G K E
Sbjct: 257 DDEDEHGEDSED--GETKPE 274
Score = 31.8 bits (72), Expect = 1.3
Identities = 18/74 (24%), Positives = 34/74 (45%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
D DE +P E + +++++EE E E E ++E + +E+E
Sbjct: 188 DSDEDENPLDEEAPDMTPETSKQDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQE 247
Query: 639 EEEEEEEEEEEEEE 652
EE E + ++E+E
Sbjct: 248 LEENVERDSDDEDE 261
Score = 30.6 bits (69), Expect = 2.8
Identities = 16/79 (20%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 557 DNVPNTNKLKTIRPSIKVW--KTSDQDEIGSPRIENIIQLIRRGEREEE----EEEEEEE 610
D P T+K + ++ E+ + +E + +R+ + EE + ++E+E
Sbjct: 202 DMTPETSKQDQKEERRAAVERRLAELVEMINWNLEERRRDLRKEQELEENVERDSDDEDE 261
Query: 611 EEEEEEEEEEEEEEEVQEE 629
E+ E+ E + E + E
Sbjct: 262 HGEDSEDGETKPESYITSE 280
>gnl|CDD|220624 pfam10187, Nefa_Nip30_N, N-terminal domain of NEFA-interacting
nuclear protein NIP30. This is a the N-terminal 100
amino acids of a family of proteins conserved from
plants to humans. The full-length protein has putatively
been called NEFA-interacting nuclear protein NIP30,
however no reference could be found to confirm this.
Length = 99
Score = 36.2 bits (84), Expect = 0.007
Identities = 26/94 (27%), Positives = 40/94 (42%), Gaps = 20/94 (21%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEE---------EEEEEEEEEEEEE--------- 618
S+ DE R E + EEE +E +++++EE EE
Sbjct: 4 ESELDEARKRRQEEVRAPRDPKAEPEEEYDGRSLYERLQENKDKKQEEFEEKFKLKNQFR 63
Query: 619 --EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+E+E E + E EE E++ + EE EE EE
Sbjct: 64 GLDEDEVEFLDEVEESRRAAEKKRKREEAEELEE 97
Score = 35.4 bits (82), Expect = 0.014
Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 28/87 (32%)
Query: 596 RRGEREEEEEEEEEEEEEEE---------EEEEEEEEEEVQE------------EEE--- 631
RR E + + E EEE +E +++++EE +E E+E
Sbjct: 13 RRQEEVRAPRDPKAEPEEEYDGRSLYERLQENKDKKQEEFEEKFKLKNQFRGLDEDEVEF 72
Query: 632 ----EEEEEEEEEEEEEEEEEEEEEVR 654
EE E++ + EE EE EE R
Sbjct: 73 LDEVEESRRAAEKKRKREEAEELEEFR 99
>gnl|CDD|191716 pfam07263, DMP1, Dentin matrix protein 1 (DMP1). This family
consists of several mammalian dentin matrix protein 1
(DMP1) sequences. The dentin matrix acidic
phosphoprotein 1 (DMP1) gene has been mapped to human
chromosome 4q21. DMP1 is a bone and teeth specific
protein initially identified from mineralised dentin.
DMP1 is primarily localised in the nuclear compartment
of undifferentiated osteoblasts. In the nucleus, DMP1
acts as a transcriptional component for activation of
osteoblast-specific genes like osteocalcin. During the
early phase of osteoblast maturation, Ca(2+) surges into
the nucleus from the cytoplasm, triggering the
phosphorylation of DMP1 by a nuclear isoform of casein
kinase II. This phosphorylated DMP1 is then exported out
into the extracellular matrix, where it regulates
nucleation of hydroxyapatite. DMP1 is a unique molecule
that initiates osteoblast differentiation by
transcription in the nucleus and orchestrates
mineralised matrix formation extracellularly, at later
stages of osteoblast maturation. The DMP1 gene has been
found to be ectopically expressed in lung cancer
although the reason for this is unknown.
Length = 514
Score = 39.3 bits (91), Expect = 0.007
Identities = 18/65 (27%), Positives = 32/65 (49%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
RE E +E+ EE + +E+ +E ++ E +E + +E E +EE E RG +
Sbjct: 305 REHSRSESQEDSEENQSQEDSQEVQDPSSESSQEADLPSQENSSESQEEVVSESRGDNPD 364
Query: 660 EISLH 664
+ H
Sbjct: 365 NTTSH 369
Score = 35.0 bits (80), Expect = 0.15
Identities = 18/76 (23%), Positives = 32/76 (42%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ S QD S +E + R R EE+ E ++ E + + E + E
Sbjct: 249 QASTQDSGESQSVEYPSRKFFRKSRISEEDGRGELDDSNTMEVKSDSTENAGLSQSREHS 308
Query: 636 EEEEEEEEEEEEEEEE 651
E +E+ EE + +E+
Sbjct: 309 RSESQEDSEENQSQED 324
Score = 33.1 bits (75), Expect = 0.53
Identities = 21/86 (24%), Positives = 33/86 (38%)
Query: 570 PSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
PS + S ++ + R +N E +E+ E EE+ + E + EE +
Sbjct: 342 PSQENSSESQEEVVSESRGDNPDNTTSHSEDQEDSESSEEDSLDTPSSSESQSTEEQADS 401
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEVRG 655
E E EE E E+E G
Sbjct: 402 ESNESLSSSEESPESTEDENSSSQEG 427
Score = 32.7 bits (74), Expect = 0.76
Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 17/75 (22%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE--------------- 640
R +E+ EE + +E+ +E ++ E +E +E E +EE
Sbjct: 309 RSESQEDSEENQSQEDSQEVQDPSSESSQEADLPSQENSSESQEEVVSESRGDNPDNTTS 368
Query: 641 --EEEEEEEEEEEEV 653
E++E+ E EE+
Sbjct: 369 HSEDQEDSESSEEDS 383
Score = 29.6 bits (66), Expect = 6.9
Identities = 15/60 (25%), Positives = 26/60 (43%), Gaps = 7/60 (11%)
Query: 600 REEEEEEEE-------EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE+ + E EE E E+E +E +Q E +E + E++ EE++
Sbjct: 395 TEEQADSESNESLSSSEESPESTEDENSSSQEGLQSHSASTESRSQESQSEQDSRSEEDD 454
>gnl|CDD|224188 COG1269, NtpI, Archaeal/vacuolar-type H+-ATPase subunit I [Energy
production and conversion].
Length = 660
Score = 39.3 bits (92), Expect = 0.007
Identities = 21/89 (23%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 569 RPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
I + + ++ + + E E+ E E + EE + E+ EV+E
Sbjct: 54 VAQISLSSLLSEVLDYLRSVKGLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEE 113
Query: 629 E----EEEEEEEEEEEEEEEEEEEEEEEV 653
EE E +EE E+ E+ EE E +
Sbjct: 114 LTRKLEERLSELDEELEDLEDLLEELEPL 142
Score = 33.9 bits (78), Expect = 0.30
Identities = 18/65 (27%), Positives = 25/65 (38%), Gaps = 2/65 (3%)
Query: 593 QLIRRGEREEEEE--EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E + E E EE E ++E E ++ E E E+ EE E E
Sbjct: 213 LGFELYEVPEFDGGPSELISELEEVIAEIQDELESLRSELEALAEKIAEELLAVREILEI 272
Query: 651 EEVRG 655
E+ G
Sbjct: 273 EKALG 277
Score = 32.7 bits (75), Expect = 0.76
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE---- 640
S + ++ +R + E EE E+ E E + EEV + E+ E EE
Sbjct: 60 SSLLSEVLDYLRSVK-GLEGRLFILPEEVEKLEAELKSLEEVIKPAEKFSSEVEELTRKL 118
Query: 641 EEEEEEEEEEEEVRGGGKEEISLHFYVLYVLS 672
EE E +EE E EE+ Y+ + LS
Sbjct: 119 EERLSELDEELEDLEDLLEELEPLAYLDFDLS 150
>gnl|CDD|217393 pfam03154, Atrophin-1, Atrophin-1 family. Atrophin-1 is the
protein product of the dentatorubral-pallidoluysian
atrophy (DRPLA) gene. DRPLA OMIM:125370 is a progressive
neurodegenerative disorder. It is caused by the
expansion of a CAG repeat in the DRPLA gene on
chromosome 12p. This results in an extended
polyglutamine region in atrophin-1, that is thought to
confer toxicity to the protein, possibly through
altering its interactions with other proteins. The
expansion of a CAG repeat is also the underlying defect
in six other neurodegenerative disorders, including
Huntington's disease. One interaction of expanded
polyglutamine repeats that is thought to be pathogenic
is that with the short glutamine repeat in the
transcriptional coactivator CREB binding protein, CBP.
This interaction draws CBP away from its usual nuclear
location to the expanded polyglutamine repeat protein
aggregates that are characteristic of the polyglutamine
neurodegenerative disorders. This interferes with
CBP-mediated transcription and causes cytotoxicity.
Length = 979
Score = 39.3 bits (91), Expect = 0.007
Identities = 17/38 (44%), Positives = 25/38 (65%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE E+ + E E++ +EE E E+E+E+E E E E E E
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 38.1 bits (88), Expect = 0.017
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+REE E+ + E E++ EE E E+E+ +E E E E E E
Sbjct: 580 KREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 37.7 bits (87), Expect = 0.023
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE E+ + E E+ EE E E+E+E+E E E E E E +
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAK 623
Score = 37.0 bits (85), Expect = 0.040
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
++ EE E+ + E E++ EE E E+ +E+E E E E E E
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 36.2 bits (83), Expect = 0.066
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
++ EE E+ + E E++ EE E E+E ++E E E E E E
Sbjct: 579 KKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 35.8 bits (82), Expect = 0.087
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EE E+ + E E++ +E E E+E+E+E E E E E E
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 35.8 bits (82), Expect = 0.100
Identities = 18/53 (33%), Positives = 26/53 (49%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
EE E+ + E E++ EE E E ++E+E E E E E E + E R
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSHESRMS 634
Score = 35.4 bits (81), Expect = 0.11
Identities = 18/48 (37%), Positives = 25/48 (52%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
EE E+ + E++ EE E E+E+E+E E E E E K S H
Sbjct: 582 EEAVEKAKREAEQKAREEREREKEKEKEREREREREAERAAKASSSSH 629
Score = 35.4 bits (81), Expect = 0.11
Identities = 16/46 (34%), Positives = 27/46 (58%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+ ++ EE E+ + E E++ EE E ++E+E+E E E E E E
Sbjct: 574 SSKLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 35.0 bits (80), Expect = 0.16
Identities = 16/44 (36%), Positives = 27/44 (61%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+L ++ E E+ + E E++ EE E E+E+E+ +E E E E E
Sbjct: 576 KLAKKREEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
Score = 32.7 bits (74), Expect = 0.79
Identities = 16/39 (41%), Positives = 23/39 (58%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
R E + + R E++ EE E E+E+E+E E E E E E
Sbjct: 581 REEAVEKAKREAEQKAREEREREKEKEKEREREREREAE 619
>gnl|CDD|220504 pfam09987, DUF2226, Uncharacterized protein conserved in archaea
(DUF2226). This domain, found in various hypothetical
archaeal proteins, has no known function.
Length = 252
Score = 38.4 bits (89), Expect = 0.007
Identities = 26/72 (36%), Positives = 32/72 (44%), Gaps = 7/72 (9%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE--- 645
E+ I+LI+ E E E E E E +E E EE EEE EE E EE
Sbjct: 97 EDKIELIKEVNDNAVVEHLLETEVEVEGGECLLKEPFTPTEYEETEEEVEEPESREELLK 156
Query: 646 ----EEEEEEEV 653
+E +EE V
Sbjct: 157 KLGIKEPDEESV 168
Score = 33.0 bits (75), Expect = 0.35
Identities = 22/55 (40%), Positives = 29/55 (52%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E EE EEE EE E EE +++ +E +EE E E+ EEE+ EE
Sbjct: 130 KEPFTPTEYEETEEEVEEPESREELLKKLGIKEPDEESVEAILEDYFEEEDPLEE 184
Score = 31.1 bits (70), Expect = 1.7
Identities = 20/55 (36%), Positives = 26/55 (47%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E E E E +E E EE EE EE E EE ++ +E +EE E +
Sbjct: 117 ETEVEVEGGECLLKEPFTPTEYEETEEEVEEPESREELLKKLGIKEPDEESVEAI 171
Score = 31.1 bits (70), Expect = 1.8
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 7/77 (9%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE-------VQEEEEEE 633
D + + GE +E E EE EEE EE E E ++E +EE
Sbjct: 108 DNAVVEHLLETEVEVEGGECLLKEPFTPTEYEETEEEVEEPESREELLKKLGIKEPDEES 167
Query: 634 EEEEEEEEEEEEEEEEE 650
E E+ EEE+ EE
Sbjct: 168 VEAILEDYFEEEDPLEE 184
Score = 29.9 bits (67), Expect = 3.8
Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Query: 598 GEREEEEEEEEEEEEEEE----EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E EEE EE E EE + +E +EE E + E+ EEE+ EE + E +
Sbjct: 139 EETEEEVEEPESREELLKKLGIKEPDEESVEAILEDYFEEEDPLEELKNSLISTAELRVL 198
Query: 654 RGGGKEEISL 663
R G ++ +
Sbjct: 199 RMEGTVDVLV 208
>gnl|CDD|240419 PTZ00440, PTZ00440, reticulocyte binding protein 2-like protein;
Provisional.
Length = 2722
Score = 39.4 bits (92), Expect = 0.007
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++L+ + + EE +E E E E +E+ +EE+ Q++E ++EEE++ +E
Sbjct: 2563 NEKLKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNR 2622
Query: 649 EEE 651
E
Sbjct: 2623 EVS 2625
Score = 39.0 bits (91), Expect = 0.010
Identities = 16/62 (25%), Positives = 30/62 (48%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
+ EE +E E E E +E+ +E Q +++E ++EEE++ +E G +
Sbjct: 2573 KIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQERLNREVSGTDDTNK 2632
Query: 663 LH 664
H
Sbjct: 2633 NH 2634
Score = 36.7 bits (85), Expect = 0.046
Identities = 18/81 (22%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 582 EIGSPRIENIIQLIRRGEREEEE--EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E+ + +++ + + R+E E E E +E+ +EE+ +++E +Q+EEE++ +E
Sbjct: 2560 ELENEKLKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYSQER 2619
Query: 640 EEEEEEEEEEEEEVRGGGKEE 660
E ++ + G +E
Sbjct: 2620 LNREVSGTDDTNKNHNTGHDE 2640
Score = 32.1 bits (73), Expect = 1.2
Identities = 28/113 (24%), Positives = 54/113 (47%), Gaps = 12/113 (10%)
Query: 548 MNSEWQSLWDNVPNTNK--LKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEE 605
MN + SL +N N N + S + +E+ S + + +L+ + E +E
Sbjct: 2508 MNKLFNSLTENNNNNNNSAKNIVDNSTYI-----INELES-HVSKLNELLSYIDNEIKEL 2561
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE----EEEEVR 654
E E+ + E+ + EE +E + E E +E+ +EE+ +++E EEE+
Sbjct: 2562 ENEKLKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKA 2614
Score = 30.2 bits (68), Expect = 5.1
Identities = 14/95 (14%), Positives = 32/95 (33%), Gaps = 3/95 (3%)
Query: 566 KTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEE---EEEEEEEE 622
+ + K ++ +I R E E +EE+ +++E EEE++
Sbjct: 2557 EIKELENEKLKLLEKAKIEESRKERERIESETQEDNTDEEQINRQQQERLQKEEEQKAYS 2616
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+E + E ++ + +E
Sbjct: 2617 QERLNREVSGTDDTNKNHNTGHDESNYGRYSNKRN 2651
>gnl|CDD|226889 COG4487, COG4487, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 438
Score = 39.0 bits (91), Expect = 0.008
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 572 IKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
IK ++ + QDEI ++ L + E E E+E +E +E +++ + E ++ E
Sbjct: 88 IKQFELALQDEIAKLEALELLNLEKDKELELLEKELDELSKELQKQLQNTAEIIEKKREN 147
Query: 632 EEEEEEEEEEEEEEEEEEEEEVR 654
+ EE + E E++ EE E R
Sbjct: 148 NKNEERLKFENEKKLEESLELER 170
Score = 34.4 bits (79), Expect = 0.18
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
ERE+ EE+ E + E +E EE+ E ++ + E ++ + E E
Sbjct: 169 EREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKRRAELGSQQVQGEALELP 222
Score = 34.0 bits (78), Expect = 0.25
Identities = 18/57 (31%), Positives = 31/57 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E E++ E + EE + E E++ EE ++ E E+ EE+ E + E +E EE+
Sbjct: 139 EIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRES 195
Score = 34.0 bits (78), Expect = 0.28
Identities = 19/61 (31%), Positives = 32/61 (52%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E++ E + EE + E E++ EE E +E+ EE+ E + E +E EE+ E K
Sbjct: 142 EKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILK 201
Query: 659 E 659
+
Sbjct: 202 K 202
Score = 33.6 bits (77), Expect = 0.36
Identities = 29/161 (18%), Positives = 52/161 (32%), Gaps = 26/161 (16%)
Query: 529 TTPFKLCTPEDFKPFVTALMNSEWQSLWDNVPNTNKL----------------------- 565
T PF + ED A Q + NT +
Sbjct: 10 TKPFTIPKCEDSIKGEQARYKQIEQEDQSRILNTLEEFEKEANEKRAQYRSAKKKELSQL 69
Query: 566 -KTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEE 624
+ + K K ++I + +Q E E+++E E E+E +E
Sbjct: 70 EEQLINQKKEQKNLFNEQIKQFEL--ALQDEIAKLEALELLNLEKDKELELLEKELDELS 127
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
+ +++ + E E++ E + EE + K E SL
Sbjct: 128 KELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLEL 168
Score = 33.3 bits (76), Expect = 0.43
Identities = 20/62 (32%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
++N ++I + +RE + EE + E E++ EE E E + EE+ E + E +E EE+
Sbjct: 134 LQNTAEIIEK-KRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQ 192
Query: 648 EE 649
E
Sbjct: 193 RE 194
Score = 32.9 bits (75), Expect = 0.52
Identities = 19/61 (31%), Positives = 30/61 (49%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E++ E + EE + E E++ EE E E E+ EE+ E + E +E EE R
Sbjct: 140 IIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAI 199
Query: 661 I 661
+
Sbjct: 200 L 200
Score = 31.3 bits (71), Expect = 1.6
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 1/69 (1%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE-EEEEEEE 646
+N +L E++ EE E E E+ EE+ E + E +E EE+ E + ++ +
Sbjct: 148 NKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKRRA 207
Query: 647 EEEEEEVRG 655
E ++V+G
Sbjct: 208 ELGSQQVQG 216
Score = 31.3 bits (71), Expect = 1.9
Identities = 15/68 (22%), Positives = 32/68 (47%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++E ++L R E+ E + E +E EE+ E + +++ + E ++ + E E
Sbjct: 161 KLEESLELEREKFEEQLHEANLDLEFKENEEQRESKWAILKKLKRRAELGSQQVQGEALE 220
Query: 647 EEEEEEVR 654
E +R
Sbjct: 221 LPNESFIR 228
Score = 31.3 bits (71), Expect = 1.9
Identities = 16/58 (27%), Positives = 29/58 (50%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+L + +++ + E E++ E + EE E E++ EE E E E+ EE+ E
Sbjct: 122 ELDELSKELQKQLQNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHE 179
Score = 30.6 bits (69), Expect = 3.2
Identities = 16/52 (30%), Positives = 25/52 (48%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E E++ E + EE + E E + EE E E E+ EE+ E + E
Sbjct: 135 QNTAEIIEKKRENNKNEERLKFENEKKLEESLELEREKFEEQLHEANLDLEF 186
Score = 29.0 bits (65), Expect = 9.4
Identities = 26/117 (22%), Positives = 45/117 (38%), Gaps = 8/117 (6%)
Query: 559 VPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEE 618
VP K TI K D + R + I Q + R EE E+E E+ +
Sbjct: 6 VPIQTKPFTIP------KCEDSIKGEQARYKQIEQEDQ--SRILNTLEEFEKEANEKRAQ 57
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYVLYVLSKGK 675
+++ + EE+ +++E++ E+ ++ E L L L K K
Sbjct: 58 YRSAKKKELSQLEEQLINQKKEQKNLFNEQIKQFELALQDEIAKLEALELLNLEKDK 114
>gnl|CDD|114011 pfam05262, Borrelia_P83, Borrelia P83/100 protein. This family
consists of several Borrelia P83/P100 antigen proteins.
Length = 489
Score = 38.8 bits (90), Expect = 0.008
Identities = 15/74 (20%), Positives = 38/74 (51%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ SP+ + + ++ E E+ + E ++ +EE + ++ + + QE + E+E
Sbjct: 259 NLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKE 318
Query: 636 EEEEEEEEEEEEEE 649
E++E E +++ E
Sbjct: 319 AEDKELEAQKKREP 332
Score = 36.9 bits (85), Expect = 0.033
Identities = 12/53 (22%), Positives = 32/53 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ E ++ E E+ + E ++ +EE + ++ + + ++E + E+E E++E E
Sbjct: 273 KQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELE 325
Score = 35.7 bits (82), Expect = 0.073
Identities = 13/64 (20%), Positives = 37/64 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E ++ E ++ E E+ + E ++ +EE ++ ++ + + ++E + E+E E++E +
Sbjct: 271 EDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKR 330
Query: 659 EEIS 662
E ++
Sbjct: 331 EPVA 334
Score = 35.4 bits (81), Expect = 0.11
Identities = 14/59 (23%), Positives = 34/59 (57%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
Q+ +RE E+ + E ++ +EE + ++ + ++E + E+E E++E E +++ E
Sbjct: 274 QVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREP 332
Score = 34.2 bits (78), Expect = 0.27
Identities = 11/57 (19%), Positives = 34/57 (59%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ ++ E E+ + E ++ +EE + ++ + + ++E + E+E E++E E +++
Sbjct: 273 KQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKK 329
Score = 33.4 bits (76), Expect = 0.38
Identities = 14/74 (18%), Positives = 38/74 (51%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
IE I++ + E + ++ + + ++E + E+E E +E E +++ E E+ ++ +
Sbjct: 283 IEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKELEAQKKREPVAEDLQKTKP 342
Query: 648 EEEEEVRGGGKEEI 661
+ E + ++ I
Sbjct: 343 QVEAQPTSLNEDAI 356
Score = 33.1 bits (75), Expect = 0.58
Identities = 11/58 (18%), Positives = 31/58 (53%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+E+++ E ++ E E+ + E+++ +EE + ++ + + ++E + E KE
Sbjct: 267 SSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDKEL 324
Score = 32.3 bits (73), Expect = 0.93
Identities = 12/69 (17%), Positives = 34/69 (49%), Gaps = 10/69 (14%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE----------EEEE 651
++++E + + + +E+++V E ++ E E+ + E ++ +EE + ++
Sbjct: 251 RQKQQEAKNLPKPADTSSPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQ 310
Query: 652 EVRGGGKEE 660
E + KE
Sbjct: 311 ESKASEKEA 319
Score = 31.9 bits (72), Expect = 1.1
Identities = 10/55 (18%), Positives = 32/55 (58%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E+++ E ++ E E+ + E ++ +E + ++ + + ++E + E+E E++
Sbjct: 268 SPKEDKQVAENQKREIEKAQIEIKKNDEEALKAKDHKAFDLKQESKASEKEAEDK 322
Score = 31.1 bits (70), Expect = 1.9
Identities = 12/59 (20%), Positives = 30/59 (50%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+E + E+E E++E E +++ E V E+ ++ + + E + E+ + G + +
Sbjct: 310 QESKASEKEAEDKELEAQKKREPVAEDLQKTKPQVEAQPTSLNEDAIDSSNPVYGLKVV 368
>gnl|CDD|217827 pfam03979, Sigma70_r1_1, Sigma-70 factor, region 1.1. Region 1.1
modulates DNA binding by region 2 and 4 when sigma is
unbound by the core RNA polymerase. Region 1.1 is also
involved in promoter binding.
Length = 79
Score = 35.3 bits (82), Expect = 0.008
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
Query: 580 QDEIGSPRIENIIQLI-RRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
D++ S +I++II ++ G EE + EE +EE +E+ EEE E
Sbjct: 33 PDDVDSEQIDDIISMLEDMGIEVVEEADSEELDEETSSDEDAEEEAE 79
Score = 32.6 bits (75), Expect = 0.073
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEE 650
EV EE + EE +EE +E+ EEE E
Sbjct: 54 EVVEEADSEELDEETSSDEDAEEEAE 79
Score = 29.6 bits (67), Expect = 1.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEEE 651
EE + EE +EE +E+ EEE E
Sbjct: 57 EEADSEELDEETSSDEDAEEEAE 79
Score = 29.6 bits (67), Expect = 1.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 630 EEEEEEEEEEEEEEEEEEEEEEE 652
EE + EE +EE +E+ EEE E
Sbjct: 57 EEADSEELDEETSSDEDAEEEAE 79
Score = 27.6 bits (62), Expect = 4.2
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 632 EEEEEEEEEEEEEEEEEEEEEV 653
EE + EE +EE +E+ EEE
Sbjct: 57 EEADSEELDEETSSDEDAEEEA 78
Score = 27.6 bits (62), Expect = 4.7
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEE 646
EE EE +EE +E+ EEE E
Sbjct: 57 EEADSEELDEETSSDEDAEEEAE 79
>gnl|CDD|148750 pfam07321, YscO, Type III secretion protein YscO. This family
contains the bacterial type III secretion protein YscO,
which is approximately 150 residues long. YscO has been
shown to be required for high-level expression and
secretion of the anti-host proteins V antigen and Yops
in Yersinia pestis.
Length = 152
Score = 37.0 bits (86), Expect = 0.008
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE---EEEEVQEEEEEEEEE 636
Q ++G R EN L ++ ++ E E + + ++ +E +E+ E +E+ E
Sbjct: 73 QQQVGLLR-ENEASLEQQLAEAKQRLEAERQRLRQARQQLQEARKAQEKFAELARQEQAE 131
Query: 637 EEEEEEEEEEEEEEEEVR 654
+ + + EE E+EE
Sbjct: 132 AQAQRQYLEELEQEEFRT 149
>gnl|CDD|235285 PRK04335, PRK04335, cell division protein ZipA; Provisional.
Length = 313
Score = 38.6 bits (90), Expect = 0.008
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 4/81 (4%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE----EEEVQEEEEE 632
+++E + E I + + + + E+ E + EE +EE EE E + + E + E
Sbjct: 97 ELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQPE 156
Query: 633 EEEEEEEEEEEEEEEEEEEEV 653
EE E E +E EE + E E +V
Sbjct: 157 EETEIEVDEPEEPKPEPELDV 177
Score = 33.6 bits (77), Expect = 0.28
Identities = 20/68 (29%), Positives = 31/68 (45%), Gaps = 8/68 (11%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
++ Q E P++E R+EE EE E + E + EEE + E +E EE
Sbjct: 117 QSQPQPEKVEPQVEE--------PRDEEVLEEPEPVAAKVPMAEVQPEEETEIEVDEPEE 168
Query: 636 EEEEEEEE 643
+ E E +
Sbjct: 169 PKPEPELD 176
Score = 33.2 bits (76), Expect = 0.41
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EEEE++ E+EE + Q + + E+ E + EE +EE EE E
Sbjct: 95 GGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPE 142
Score = 32.5 bits (74), Expect = 0.74
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E EEEE++ E+EE VQ + + + E+ E + EE +EE EE
Sbjct: 95 GGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEP 141
Score = 32.1 bits (73), Expect = 0.93
Identities = 18/48 (37%), Positives = 27/48 (56%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E EEEE++ E+EE + + + Q E+ E + EE +EE EE E
Sbjct: 95 GGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPE 142
Score = 30.9 bits (70), Expect = 1.9
Identities = 18/50 (36%), Positives = 27/50 (54%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E EEEE++ E+EE + + + E+ E + EE +EE EE E V
Sbjct: 95 GGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPV 144
Score = 30.5 bits (69), Expect = 2.5
Identities = 31/92 (33%), Positives = 40/92 (43%), Gaps = 27/92 (29%)
Query: 602 EEEEEEEEEEEEEEEE----------EEEEEEEEVQEEEEEEEEEEEE------------ 639
E EEEE++ E+EE + E+ E +V+E +EE EE E
Sbjct: 95 GGELEEEEDKFEQEEAPIPVQAQSQPQPEKVEPQVEEPRDEEVLEEPEPVAAKVPMAEVQ 154
Query: 640 -EEEEEEEEEEEEEVRGGGKEEISLHFYVLYV 670
EEE E E +E EE K E L VL V
Sbjct: 155 PEEETEIEVDEPEEP----KPEPELDVIVLNV 182
>gnl|CDD|221122 pfam11490, DNA_pol3_alph_N, DNA polymerase III polC-type
N-terminus. This is an N-terminal domain of DNA
polymerase III polC subunit A that is found only in
Firmicutes. DNA polymerase polC-type III enzyme
functions as the 'replicase' in low G + C Gram-positive
bacteria. Purine asymmetry is a characteristic of
organisms with a heterodimeric DNA polymerase III
alpha-subunit constituted by polC which probably plays a
direct role in the maintenance of strand-biased gene
distribution; since, among prokaryotic genomes, the
distribution of genes on the leading and lagging strands
of the replication fork is known to be biased. The
domain is associated with DNA_pol3_alpha pfam07733.
Length = 180
Score = 37.3 bits (87), Expect = 0.009
Identities = 19/45 (42%), Positives = 33/45 (73%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E+E EEE EE EE++EEEE + +E E +++E E++++E+E
Sbjct: 136 DEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 36.9 bits (86), Expect = 0.013
Identities = 21/47 (44%), Positives = 35/47 (74%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E +E+E EEE EE EE++EEEE ++ EE E +++E E++++E+E
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 34.2 bits (79), Expect = 0.095
Identities = 19/45 (42%), Positives = 31/45 (68%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E +E+E EEE EE EE+ +EEE + EE E +++E E++++E
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKE 178
Score = 34.2 bits (79), Expect = 0.11
Identities = 19/44 (43%), Positives = 32/44 (72%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E E EEE EE EE++EEEE + EE ++ +++E E++++E+E
Sbjct: 137 EDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 33.1 bits (76), Expect = 0.29
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E +E+E EEE EE EE++EEE + EE E +++E E++++E+E
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 32.7 bits (75), Expect = 0.34
Identities = 19/56 (33%), Positives = 37/56 (66%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
G +++ +++ EEE EE EE++EEEE + EE E ++++E E++++E+E
Sbjct: 125 GFGKLKIDVEVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
Score = 32.7 bits (75), Expect = 0.36
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E +E+E EEE EE EE +EEEE + EE E +++E E++++
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKE 178
Score = 32.3 bits (74), Expect = 0.41
Identities = 18/46 (39%), Positives = 32/46 (69%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E +E+E EEE EE EE++ +EE + EE E +++E E++++E+
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEK 179
Score = 31.1 bits (71), Expect = 1.1
Identities = 19/47 (40%), Positives = 33/47 (70%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E +E+E EEE EE EE++E +E + EE E +++E E++++E+E
Sbjct: 134 EVDEDESSEEEIEEFEEQKEEEEAKLAEEALEALKKKEAEKKKKEKE 180
>gnl|CDD|224259 COG1340, COG1340, Uncharacterized archaeal coiled-coil protein
[Function unknown].
Length = 294
Score = 38.1 bits (89), Expect = 0.009
Identities = 20/70 (28%), Positives = 39/70 (55%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
I+ ERE E E++++ EEE E ++++E +E E+ ++ EE E+ +E + E+
Sbjct: 109 IKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEID 168
Query: 655 GGGKEEISLH 664
K+ +H
Sbjct: 169 ELKKKAREIH 178
Score = 37.4 bits (87), Expect = 0.021
Identities = 19/85 (22%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 573 KVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEE---EEEEEEEEEEEEEEEEEEEVQEE 629
++ + ++ +G I+++ + I R E++++ EEE E ++ +E +E E+ ++
Sbjct: 94 ELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDAKKA 153
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEVR 654
EE E+ +E + E +E +++ E+
Sbjct: 154 LEENEKLKELKAEIDELKKKAREIH 178
Score = 31.2 bits (71), Expect = 1.5
Identities = 15/58 (25%), Positives = 24/58 (41%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R +E+ E + E E E E+ Q+ EEE E ++ +E +E E
Sbjct: 93 RELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKELRKELEDA 150
Score = 30.4 bits (69), Expect = 2.5
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK- 658
++ +E EE + E E E++ + ++ +E+ + E+ EE +E EE E+ + G K
Sbjct: 221 KKIDELHEEFRNLQNELRELEKKIKALRAKEKAAKRREKREELKERAEEIYEKFKRGEKL 280
Query: 659 --EEISL 663
EE+ L
Sbjct: 281 TTEELLL 287
Score = 29.3 bits (66), Expect = 6.6
Identities = 19/79 (24%), Positives = 34/79 (43%), Gaps = 6/79 (7%)
Query: 591 IIQLIRRGEREEEEEEEEEE----EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+Q +R+ RE +E+ E + E E E E++ Q EEE E ++ +E
Sbjct: 84 KLQELRKEYRELKEKRNEFNLGGRSIKSLEREIERLEKKQQTSVLTPEEERELVQKIKEL 143
Query: 647 EEEEEEVRGGGKEEISLHF 665
+E E+ + E +
Sbjct: 144 RKELEDAK--KALEENEKL 160
Score = 29.3 bits (66), Expect = 7.1
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ ++ ++ E E+ +E + E +E +++ E E++QE E +E EE + EE
Sbjct: 142 ELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEAQEYHEEMIKLFEE 201
Query: 647 EEEEEEVRGGGKEEI 661
+E + EE
Sbjct: 202 ADELRKEADELHEEF 216
Score = 28.9 bits (65), Expect = 9.6
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 8/78 (10%)
Query: 585 SPRIEN-IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE--EEE 641
+P E ++Q I+ +E E+ ++ EE E+ +E + E +E ++ E E+ +E E
Sbjct: 129 TPEEERELVQKIKELRKELEDAKKALEENEKLKELKAEIDELKKKAREIHEKIQELANEA 188
Query: 642 EEEEEE-----EEEEEVR 654
+E EE EE +E+R
Sbjct: 189 QEYHEEMIKLFEEADELR 206
>gnl|CDD|220600 pfam10147, CR6_interact, Growth arrest and DNA-damage-inducible
proteins-interacting protein 1. Members of this family
of proteins act as negative regulators of G1 to S cell
cycle phase progression by inhibiting cyclin-dependent
kinases. Inhibitory effects are additive with GADD45
proteins but occur also in the absence of GADD45
proteins. Furthermore, they act as a repressor of the
orphan nuclear receptor NR4A1 by inhibiting AB
domain-mediated transcriptional activity.
Length = 217
Score = 37.9 bits (88), Expect = 0.010
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E+ EE EEEE E ++ EE E+++E+E + E E +
Sbjct: 85 EKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAK 128
Score = 35.6 bits (82), Expect = 0.058
Identities = 20/86 (23%), Positives = 31/86 (36%), Gaps = 20/86 (23%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE------------------ 641
E+ EE EEEE E + EE Q++E+E + E E
Sbjct: 84 AEKLEELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQ 143
Query: 642 --EEEEEEEEEEEVRGGGKEEISLHF 665
+ E++ +E + E HF
Sbjct: 144 KRKREQKARAAKERKERLVAEAREHF 169
Score = 32.1 bits (73), Expect = 0.64
Identities = 17/79 (21%), Positives = 31/79 (39%), Gaps = 23/79 (29%)
Query: 599 EREEEEE-----------EEEEEEEEEEEEEEEEEEEEVQE------------EEEEEEE 635
E EEEE EE E+++E+E + E E+ + ++ +
Sbjct: 88 EELEEEEREWYPSLNQMLEENREQQKEKEARRQAREAEIAKNMAKMPQMIADWRAQKRKR 147
Query: 636 EEEEEEEEEEEEEEEEEVR 654
E++ +E +E E R
Sbjct: 148 EQKARAAKERKERLVAEAR 166
Score = 29.8 bits (67), Expect = 3.4
Identities = 16/70 (22%), Positives = 34/70 (48%), Gaps = 13/70 (18%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEE-------------EEEVQEEEEEEEEEEEEEEE 642
R +R+ E++ +E +E E E +E +Q++E+EE+++ +E +
Sbjct: 141 RAQKRKREQKARAAKERKERLVAEAREHFGYWVDPRDPRFQEMLQQKEKEEKKKVKEAKR 200
Query: 643 EEEEEEEEEE 652
E+EE+
Sbjct: 201 REKEEKRMAA 210
>gnl|CDD|135898 PRK06397, PRK06397, V-type ATP synthase subunit H; Validated.
Length = 111
Score = 36.1 bits (83), Expect = 0.010
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 4/76 (5%)
Query: 592 IQLIRRGEREEEEE----EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
I++I+ E ++E + E+E E +E + + EE+ + EEE E +E E
Sbjct: 12 IKIIKEKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAE 71
Query: 648 EEEEEVRGGGKEEISL 663
++ E+ K+E SL
Sbjct: 72 KKAVEIINKAKQEASL 87
Score = 31.8 bits (72), Expect = 0.28
Identities = 14/61 (22%), Positives = 28/61 (45%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ I + E E +E + + EE+ ++ EEE E +E E++ E + ++
Sbjct: 24 KEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARKEAEKKAVEIINKAKQ 83
Query: 649 E 649
E
Sbjct: 84 E 84
Score = 29.5 bits (66), Expect = 2.2
Identities = 16/61 (26%), Positives = 34/61 (55%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++L+R + EE + +E+EE ++E + E+E + +E + + EE+ ++ EEE
Sbjct: 1 MELMRMDDLEEIKIIKEKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYN 60
Query: 652 E 652
Sbjct: 61 A 61
Score = 28.7 bits (64), Expect = 4.0
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 4/76 (5%)
Query: 571 SIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE--EEVQE 628
IK+ K +++E I NI +E + + EE+ ++ EEE E ++
Sbjct: 11 EIKIIK--EKEESIDKEIANIKNEQENEIKEAKSKYEEKAKKTEEESLNMYNAALMEARK 68
Query: 629 EEEEEEEEEEEEEEEE 644
E E++ E + ++E
Sbjct: 69 EAEKKAVEIINKAKQE 84
>gnl|CDD|115072 pfam06391, MAT1, CDK-activating kinase assembly factor MAT1. MAT1
is an assembly/targeting factor for cyclin-dependent
kinase-activating kinase (CAK), which interacts with the
transcription factor TFIIH. The domain found to the
N-terminal side of this domain is a C3HC4 RING finger.
Length = 200
Score = 37.4 bits (87), Expect = 0.011
Identities = 20/55 (36%), Positives = 37/55 (67%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
EN ++R R E+EE E+ EEE+E +EE+ +Q+EE+E++ +E++++E
Sbjct: 76 ENKDSIMRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQE 130
Score = 36.7 bits (85), Expect = 0.021
Identities = 18/52 (34%), Positives = 34/52 (65%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
I R +R E+EE E+ EEE+E +EE+ ++EE+E++ +E++++E
Sbjct: 79 DSIMRNKRRLTREQEELEQALEEEKEMKEEKRLHLQKEEQEQKMAKEKDKQE 130
Score = 35.9 bits (83), Expect = 0.031
Identities = 25/85 (29%), Positives = 47/85 (55%), Gaps = 12/85 (14%)
Query: 587 RIENII-QLIRRGEREEEEEEEEEEEEEEEE---------EEEEEEEEEVQEEEEEEEEE 636
+E I+ L + EE EE+ ++ E+E ++ E+EE E+ EEE+E +EE
Sbjct: 49 EVETIVFNLTNGIDVEETEEKVDQYEKENKDSIMRNKRRLTREQEELEQALEEEKEMKEE 108
Query: 637 EEEEEEEEEEEEEEEEVRGGGKEEI 661
+ ++EE+E++ + + K+EI
Sbjct: 109 KRLHLQKEEQEQKMAKEK--DKQEI 131
>gnl|CDD|184860 PRK14858, tatA, twin arginine translocase protein A; Provisional.
Length = 108
Score = 36.0 bits (83), Expect = 0.011
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++ +EE EE+E+ E+ E ++E E + EE++ + + E G G
Sbjct: 47 KQSMQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGDGA 106
Query: 659 EE 660
+
Sbjct: 107 KA 108
Score = 35.2 bits (81), Expect = 0.017
Identities = 17/78 (21%), Positives = 41/78 (52%)
Query: 583 IGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
IG ++ ++ + + RG E ++ ++ ++ +EE EE+E+ ++ E ++E E E +
Sbjct: 20 IGPQKLPDLARSLGRGLAEFKKATDDFKQSMQEESRTAEEKEKAEKLAETKKEAEAPEAK 79
Query: 643 EEEEEEEEEEVRGGGKEE 660
EE++ + + G
Sbjct: 80 AEEDQAPKPKGAGEPPAT 97
Score = 34.1 bits (78), Expect = 0.056
Identities = 13/65 (20%), Positives = 29/65 (44%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++ + ++ +EE EE+E+ E+ E +E E E + EE++ + + E
Sbjct: 40 KKATDDFKQSMQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVA 99
Query: 656 GGKEE 660
+
Sbjct: 100 SKAGD 104
Score = 29.8 bits (67), Expect = 1.3
Identities = 12/59 (20%), Positives = 25/59 (42%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+Q R E+E+ E+ E ++E E E + EE+ + + E + + +
Sbjct: 50 MQEESRTAEEKEKAEKLAETKKEAEAPEAKAEEDQAPKPKGAGEPPATVASKAGDGAKA 108
>gnl|CDD|129310 TIGR00206, fliF, flagellar basal-body M-ring protein/flagellar
hook-basal body protein (fliF). Component of the M
(cytoplasmic associated) ring, one of four rings
(L,P,S,M) which make up the flagellar hook-basal body
which is a major portion of the flagellar organelle.
Although the basic structure of the flagella appears to
be similar for all bacteria, additional rings and
structures surrounding the basal body have been observed
for some bacteria (eg Vibrio cholerae and Treponema
pallidum) [Cellular processes, Chemotaxis and motility].
Length = 555
Score = 38.7 bits (90), Expect = 0.011
Identities = 17/66 (25%), Positives = 31/66 (46%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
I + + R E E ++ EE+E+E E E + +++ E +EE E +
Sbjct: 478 IRPLERRRREREEELAKQAHLREEQEDEVEGELIKLDDLVGGINEGDEEVSNAELRAMAK 537
Query: 648 EEEEEV 653
E+ E+V
Sbjct: 538 EKPEDV 543
>gnl|CDD|218391 pfam05029, TIMELESS_C, Timeless protein C terminal region. The
timeless (tim) gene is essential for circadian function
in Drosophila. Putative homologues of Drosophila tim
have been identified in both mice and humans (mTim and
hTIM, respectively). Mammalian TIM is not the true
orthologue of Drosophila TIM, but is the likely
orthologue of a fly gene, timeout (also called tim-2).
mTim has been shown to be essential for embryonic
development, but does not have substantiated circadian
function. Some family members contain a SANT domain in
this region.
Length = 507
Score = 38.5 bits (89), Expect = 0.011
Identities = 18/65 (27%), Positives = 33/65 (50%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
RR + + ++ EE E++ +E+ EEEE+ + + EE E+ + E E +R
Sbjct: 229 RRKKLKPKQPNGEESGEDDFQEDPEEEEQLPESKPEETEKRVSAFQVEGSTLISAENLRQ 288
Query: 656 GGKEE 660
K+E
Sbjct: 289 QLKQE 293
Score = 37.0 bits (85), Expect = 0.037
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 586 PRIENIIQLIRRGE--REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
P + QL RR EEEE E+E +++ + E+ +E E E + + +
Sbjct: 363 PAKLSSTQLRRRAASLSGEEEEPEDELKDDVDGEQADESEHETLALRKNARQRKAGLASP 422
Query: 644 EEEEEEEEEVRGGGK 658
EEE EEE + K
Sbjct: 423 EEEALGEEEQKAPPK 437
Score = 29.3 bits (65), Expect = 7.7
Identities = 15/85 (17%), Positives = 36/85 (42%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
D D + E+ +R+ R+ + EEE EEE++ ++ Q ++ +++
Sbjct: 392 DVDGEQADESEHETLALRKNARQRKAGLASPEEEALGEEEQKAPPKKKQLNQKNKQQTGS 451
Query: 639 EEEEEEEEEEEEEEVRGGGKEEISL 663
+EE ++ + ++ L
Sbjct: 452 GTNSDEERDDTSLDEDRDLADDGGL 476
Score = 28.9 bits (64), Expect = 9.2
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EEEE E+E++++ + E+ +E E E + + G E
Sbjct: 380 GEEEEPEDELKDDVDGEQADESEHETLALRKNARQRKAGLASPE 423
>gnl|CDD|236277 PRK08493, PRK08493, NADH dehydrogenase subunit G; Validated.
Length = 819
Score = 38.5 bits (90), Expect = 0.011
Identities = 19/66 (28%), Positives = 32/66 (48%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EEE + EE ++ +E EE E+ E+ E+ E +EE ++EV K+ +
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEV 503
Query: 664 HFYVLY 669
Y+L
Sbjct: 504 DTYLLL 509
Score = 36.6 bits (85), Expect = 0.048
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE ++ +E EE E+ E E+ E +EE ++E ++ ++ E +
Sbjct: 450 KSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDT 505
Score = 36.2 bits (84), Expect = 0.068
Identities = 15/62 (24%), Positives = 28/62 (45%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EE ++ +E EE E+ Q E+ E +EE ++E ++ ++ E E
Sbjct: 451 SLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLE 510
Query: 660 EI 661
E+
Sbjct: 511 EL 512
Score = 35.1 bits (81), Expect = 0.14
Identities = 19/80 (23%), Positives = 35/80 (43%), Gaps = 5/80 (6%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
++E +E Q I + EE E+ E+ E+ E +EE +E ++ ++ E
Sbjct: 444 EEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEV 503
Query: 640 E-----EEEEEEEEEEEEVR 654
+ EE EE E++
Sbjct: 504 DTYLLLEELGINEETYEKLE 523
Score = 33.1 bits (76), Expect = 0.55
Identities = 12/63 (19%), Positives = 30/63 (47%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+++ E + EE ++ +E EE + E+ E+ E +EE ++E ++
Sbjct: 438 LLKKFLEEEAILKSLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKV 497
Query: 651 EEV 653
+++
Sbjct: 498 KKI 500
Score = 31.2 bits (71), Expect = 2.5
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E EE E+ E+ E+ +EE ++E ++ ++ E + E G +E
Sbjct: 462 EAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEELGINEETYE 520
Score = 30.8 bits (70), Expect = 3.3
Identities = 14/68 (20%), Positives = 28/68 (41%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+ I R + E+ E+ E +EE ++E ++ ++ + + EE E
Sbjct: 457 QSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEELGINE 516
Query: 642 EEEEEEEE 649
E E+ E
Sbjct: 517 ETYEKLEA 524
Score = 29.7 bits (67), Expect = 5.9
Identities = 17/74 (22%), Positives = 33/74 (44%)
Query: 571 SIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
S++ +K S E +E I + + + E +EE ++E ++ ++ E + E
Sbjct: 451 SLEEFKQSIVKEAALSILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLE 510
Query: 631 EEEEEEEEEEEEEE 644
E EE E+ E
Sbjct: 511 ELGINEETYEKLEA 524
Score = 29.7 bits (67), Expect = 7.1
Identities = 16/59 (27%), Positives = 28/59 (47%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
I RE+ E+ E+ E +EE ++E ++ + E + EE EE E+ E +
Sbjct: 467 ILEEIREKVLEQAEQGCENQEEVKKEVPKKVKKIPEVDTYLLLEELGINEETYEKLEAL 525
>gnl|CDD|198139 smart01071, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases.and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain.
Expression of a construct consisting of only the
N-terminal domain of Saccharomyces pombe Cdc37 results
in cellular viability. This indicates that interactions
with the cochaperone Hsp90 may not be essential for
Cdc37 function.
Length = 154
Score = 36.6 bits (85), Expect = 0.012
Identities = 14/53 (26%), Positives = 33/53 (62%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E +++ ++E EE + E EE+++ ++ ++E++E ++ +E E+EE
Sbjct: 86 EMLAELQDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEE 138
Score = 35.1 bits (81), Expect = 0.048
Identities = 13/49 (26%), Positives = 29/49 (59%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+L + ++E EE + E EE ++ ++ ++ Q+E ++ +E E+EE
Sbjct: 90 ELQDQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEE 138
Score = 33.5 bits (77), Expect = 0.15
Identities = 12/46 (26%), Positives = 28/46 (60%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
QL + E + E EE ++ ++ ++E++E++++ +E E+EE
Sbjct: 93 DQLKKELEEANGDSEGLLEELKKHRDKLKKEQKELRKKLDELEKEE 138
Score = 30.1 bits (68), Expect = 1.9
Identities = 16/73 (21%), Positives = 39/73 (53%), Gaps = 6/73 (8%)
Query: 586 PRIENIIQLIRRGEREEEEE------EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
RI+ +++ +R E E E +++ ++E EE + E + EE ++ ++ ++
Sbjct: 63 KRIDKLLKGLREEELSPETPTYNEMLAELQDQLKKELEEANGDSEGLLEELKKHRDKLKK 122
Query: 640 EEEEEEEEEEEEE 652
E++E ++ +E E
Sbjct: 123 EQKELRKKLDELE 135
>gnl|CDD|221198 pfam11740, KfrA_N, Plasmid replication region DNA-binding N-term.
The broad host-range plasmid RK2 is able to replicate in
and be inherited in a stable manner in diverse
Gram-negative bacterial species. It encodes a number of
co-ordinately regulated operons including a central
control korF1 operon that represses the kfrA operon. The
KfrA polypeptide is a site-specific DNA-binding protein
whose operator overlaps the kfrA promoter. The
N-terminus, containing an helix-turn-helix motif, is
essential for function. Downstream from this family is
an extended coiled-coil domain containing a heptad
repeat segment which is probably responsible for
formation of multimers, and may provide an example of a
bridge to host structures required for plasmid
partitioning.
Length = 120
Score = 36.1 bits (84), Expect = 0.012
Identities = 20/85 (23%), Positives = 27/85 (31%), Gaps = 16/85 (18%)
Query: 567 TIRPSIKVWK-------TSDQDEIGSPRIENIIQLIRR---------GEREEEEEEEEEE 610
TI +K W+ E+ E + +L+ ER E
Sbjct: 36 TISKVLKEWREELRAALAPAAPELPDALSEALAELVAALWEAAQEEAEERLAAARAAAEA 95
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEE 635
E E E E E E + EEE E
Sbjct: 96 ERAELEAELAEAAAEAEALEEELEA 120
Score = 35.0 bits (81), Expect = 0.027
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
EE EE E E E++ E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 34.6 bits (80), Expect = 0.036
Identities = 16/41 (39%), Positives = 16/41 (39%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE EE E E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 34.2 bits (79), Expect = 0.045
Identities = 14/38 (36%), Positives = 14/38 (36%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
EE E E E E E E E E EEE E
Sbjct: 83 EERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 33.0 bits (76), Expect = 0.13
Identities = 15/40 (37%), Positives = 16/40 (40%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE EE + E E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELE 119
Score = 32.3 bits (74), Expect = 0.25
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE EE E + E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 31.9 bits (73), Expect = 0.34
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE EE E + E E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
Score = 31.9 bits (73), Expect = 0.35
Identities = 23/113 (20%), Positives = 30/113 (26%), Gaps = 33/113 (29%)
Query: 574 VWKTSDQ--DEIGSPRIENIIQLIRRG----------EREEEEEEEEEEEEEE------- 614
V +D P ++ + + + G E EE E
Sbjct: 6 VAAAADALLAAGERPTVDAVREELGTGSPTTISKVLKEWREELRAALAPAAPELPDALSE 65
Query: 615 --------------EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE EE E E E E E E E E EEE+
Sbjct: 66 ALAELVAALWEAAQEEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEEL 118
Score = 31.1 bits (71), Expect = 0.65
Identities = 15/41 (36%), Positives = 16/41 (39%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EE EE E E + E E E E E EEE E
Sbjct: 80 EEAEERLAAARAAAEAERAELEAELAEAAAEAEALEEELEA 120
>gnl|CDD|221562 pfam12406, DUF3664, Surface protein. This family of proteins is
found in eukaryotes. Proteins in this family are
typically between 131 and 312 amino acids in length.
Length = 100
Score = 35.4 bits (81), Expect = 0.012
Identities = 22/64 (34%), Positives = 32/64 (50%), Gaps = 4/64 (6%)
Query: 593 QLIRRGEREEE----EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
QLI + E+ +E E E ++ + E E EE E E V E E EE +E ++ EE
Sbjct: 22 QLIDQAEQSQEPTQQEPIEPQQPTQPETEPEELEPETVTVEVPEPVTSEEPKESDQTEEP 81
Query: 649 EEEE 652
E +
Sbjct: 82 TETQ 85
Score = 33.5 bits (76), Expect = 0.075
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E ++ + E E EE E E EV E EE +E ++ EE E ++ ++
Sbjct: 38 PIEPQQPTQPETEPEELEPETVTVEVPEPVTSEEPKESDQTEEPTETQDSKQ 89
Score = 33.1 bits (75), Expect = 0.094
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++E E ++ + E E EE E E V+ E EE +E ++ EE E ++
Sbjct: 35 QQEPIEPQQPTQPETEPEELEPETVTVEVPEPVTSEEPKESDQTEEPTETQD 86
Score = 31.9 bits (72), Expect = 0.25
Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 5/56 (8%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEE-----EEEVQEEEEEEEEEEEEEEEEEEEEEE 649
++E E ++ + E E EE E E E V EE +E ++ EE E ++ ++E
Sbjct: 35 QQEPIEPQQPTQPETEPEELEPETVTVEVPEPVTSEEPKESDQTEEPTETQDSKQE 90
Score = 30.8 bits (69), Expect = 0.52
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
++++ + + ++ E+ +E Q+E E ++ + E E EE E E
Sbjct: 13 DDQQPLDPNQLIDQAEQSQEPTQQEPIEPQQPTQPETEPEELEPE 57
Score = 29.6 bits (66), Expect = 1.3
Identities = 16/56 (28%), Positives = 24/56 (42%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++ E+ +E ++E E ++ E E EE E E E E EE EE
Sbjct: 25 DQAEQSQEPTQQEPIEPQQPTQPETEPEELEPETVTVEVPEPVTSEEPKESDQTEE 80
Score = 29.3 bits (65), Expect = 1.8
Identities = 15/53 (28%), Positives = 27/53 (50%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ + E E EE E E E E EE +E ++ EE E ++ ++E ++
Sbjct: 42 QQPTQPETEPEELEPETVTVEVPEPVTSEEPKESDQTEEPTETQDSKQEPTQQ 94
Score = 29.3 bits (65), Expect = 2.1
Identities = 15/64 (23%), Positives = 29/64 (45%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ E+ +E ++E E ++ + E E +E E E E E EE +E ++ + +
Sbjct: 26 QAEQSQEPTQQEPIEPQQPTQPETEPEELEPETVTVEVPEPVTSEEPKESDQTEEPTETQ 85
Query: 661 ISLH 664
S
Sbjct: 86 DSKQ 89
Score = 28.1 bits (62), Expect = 4.6
Identities = 11/45 (24%), Positives = 24/45 (53%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++++ + + ++ E+ +E QE E ++ + E E EE E E
Sbjct: 13 DDQQPLDPNQLIDQAEQSQEPTQQEPIEPQQPTQPETEPEELEPE 57
Score = 27.7 bits (61), Expect = 6.6
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E E EE E E E E EE +E ++ EE E ++ ++E ++ +E
Sbjct: 45 TQPETEPEELEPETVTVEVPEPVTSEEPKESDQTEEPTETQDSKQEPTQQPVDE 98
Score = 27.7 bits (61), Expect = 7.9
Identities = 10/45 (22%), Positives = 25/45 (55%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++++ + + ++ E+ +E ++E E ++ + E E EE E E
Sbjct: 13 DDQQPLDPNQLIDQAEQSQEPTQQEPIEPQQPTQPETEPEELEPE 57
Score = 27.3 bits (60), Expect = 8.5
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++++ + + ++ E+ QE ++E E ++ + E E EE E
Sbjct: 13 DDQQPLDPNQLIDQAEQSQEPTQQEPIEPQQPTQPETEPEELE 55
>gnl|CDD|240331 PTZ00254, PTZ00254, 40S ribosomal protein SA; Provisional.
Length = 249
Score = 37.7 bits (88), Expect = 0.012
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 37.7 bits (88), Expect = 0.012
Identities = 20/64 (31%), Positives = 24/64 (37%), Gaps = 10/64 (15%)
Query: 594 LIRRGE--REEEEEE--------EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
L RG R+EE + + EE EE+EE E E E EE EE
Sbjct: 183 LRLRGTLPRDEEWDVMVDLFFWRDPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAA 242
Query: 644 EEEE 647
E
Sbjct: 243 ANNE 246
Score = 37.0 bits (86), Expect = 0.021
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 36.2 bits (84), Expect = 0.038
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+ EE EE +E E E+ E EE EE V E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 35.8 bits (83), Expect = 0.052
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 35.8 bits (83), Expect = 0.056
Identities = 13/41 (31%), Positives = 16/41 (39%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ EE E +EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 35.0 bits (81), Expect = 0.076
Identities = 14/41 (34%), Positives = 17/41 (41%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ EE EE+EE E E+ E EE EE E
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANNE 246
Score = 32.7 bits (75), Expect = 0.50
Identities = 11/40 (27%), Positives = 15/40 (37%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+ EE EE+ + E E+ E EE EE
Sbjct: 206 DPEEAEEKEEAAAETAGVEDAAAAAAEAEEGEEWVAAANN 245
>gnl|CDD|165026 PHA02644, PHA02644, hypothetical protein; Provisional.
Length = 112
Score = 35.7 bits (81), Expect = 0.012
Identities = 19/54 (35%), Positives = 36/54 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + E ++E E+E++ E+ E E+E + E+ E E+E++ E+ E E+E+E E+
Sbjct: 51 EMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFED 104
Score = 35.4 bits (80), Expect = 0.020
Identities = 18/50 (36%), Positives = 35/50 (70%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E ++E E+E++ E+ E E+E++ E E E+E++ E+ E E+E+E E+ +
Sbjct: 57 EHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSD 106
Score = 35.0 bits (79), Expect = 0.030
Identities = 17/50 (34%), Positives = 36/50 (72%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E ++E E+E++ E+ E E+E++ ++ E E+E++ E+ E E+E+E E+ +
Sbjct: 57 EHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSD 106
Score = 34.6 bits (78), Expect = 0.034
Identities = 17/52 (32%), Positives = 36/52 (69%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ E E+E++ E+ E E+E++ E+ E E+E + E+ E E+E+E E+ + +++
Sbjct: 60 KKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSDASDKK 111
Score = 34.6 bits (78), Expect = 0.041
Identities = 17/52 (32%), Positives = 36/52 (69%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+E + E ++E E+E++ E+ E ++E++ E+ E E+E++ E+ E E+E+
Sbjct: 49 EDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEK 100
Score = 34.2 bits (77), Expect = 0.044
Identities = 17/54 (31%), Positives = 37/54 (68%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E ++E E+E++ E+ E E+E++ E+ E+E++ E+ E E+E+E E+ + ++
Sbjct: 57 EHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSDASDK 110
Score = 33.8 bits (76), Expect = 0.062
Identities = 16/52 (30%), Positives = 38/52 (73%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++E E+E++ E+ E E+E++ E+ E ++E++ E+ E E+E+E E+ + +++
Sbjct: 60 KKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSDASDKK 111
Score = 33.8 bits (76), Expect = 0.066
Identities = 18/53 (33%), Positives = 35/53 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E + E ++E E+E++ E+ E E +++ E+ E E+E++ E+ E E+E+E
Sbjct: 49 EDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKE 101
Score = 33.8 bits (76), Expect = 0.076
Identities = 16/52 (30%), Positives = 37/52 (71%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++E E+E++ E+ E E+E++ E+ E E +++ E+ E E+E+E E+ + +++
Sbjct: 60 KKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSDASDKK 111
Score = 33.4 bits (75), Expect = 0.084
Identities = 16/52 (30%), Positives = 35/52 (67%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+E + E ++E E+E++ E+ + E+E++ E+ E E+E++ E+ E E+ +
Sbjct: 49 EDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEK 100
Score = 33.0 bits (74), Expect = 0.12
Identities = 16/52 (30%), Positives = 36/52 (69%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++E E+E++ E+ E E+E++ E+ E E++ E+ E E+E+E E+ + +++
Sbjct: 60 KKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSDASDKK 111
Score = 32.7 bits (73), Expect = 0.18
Identities = 17/52 (32%), Positives = 34/52 (65%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E + E ++E E+E++ E+ E E++ E+ E E+E++ E+ E E+E+E
Sbjct: 50 DEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKE 101
Score = 32.3 bits (72), Expect = 0.22
Identities = 16/53 (30%), Positives = 36/53 (67%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
I++ +E++ E+ E E+E++ E+ E E+E+ E+ E E+E+E E+ + +++
Sbjct: 59 IKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEFEDSDASDKK 111
Score = 32.3 bits (72), Expect = 0.24
Identities = 17/53 (32%), Positives = 32/53 (60%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E+E + E ++E E+E+ E+ E E+E++ E+ E E+E++ E+ KE
Sbjct: 49 EDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKE 101
Score = 31.9 bits (71), Expect = 0.27
Identities = 16/53 (30%), Positives = 33/53 (62%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E+E + E ++E E+E + E+ E E+E++ E+ E E+E++ E+ ++E
Sbjct: 49 EDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKE 101
Score = 29.6 bits (65), Expect = 2.2
Identities = 15/54 (27%), Positives = 31/54 (57%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
E+E + E ++E ++E++ E+ E E+E++ E+ E E+E+ + E F
Sbjct: 49 EDEMKTTHEHIKKENEDEKKPEKPENEDEKKPEKPENEDEKKPEKPENEDEKEF 102
Score = 27.7 bits (60), Expect = 8.6
Identities = 20/77 (25%), Positives = 42/77 (54%), Gaps = 11/77 (14%)
Query: 559 VPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEE 618
+ N +++KT IK ++DE + EN E E++ E+ E E+E++ E+
Sbjct: 46 ISNEDEMKTTHEHIK---KENEDEKKPEKPEN--------EDEKKPEKPENEDEKKPEKP 94
Query: 619 EEEEEEEVQEEEEEEEE 635
E E+E+E ++ + +++
Sbjct: 95 ENEDEKEFEDSDASDKK 111
>gnl|CDD|225340 COG2719, SpoVR, Uncharacterized conserved protein [Function
unknown].
Length = 495
Score = 38.2 bits (89), Expect = 0.012
Identities = 13/61 (21%), Positives = 25/61 (40%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + +R ++ EEE +EE EE + + + ++ E ++ E E
Sbjct: 170 EYGVDRYKRPKKISSEEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARRFPSEPE 229
Query: 649 E 649
E
Sbjct: 230 E 230
Score = 34.7 bits (80), Expect = 0.16
Identities = 12/63 (19%), Positives = 24/63 (38%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
I + ++ EEE +EE EE + + + + ++ E ++ E
Sbjct: 168 IMEYGVDRYKRPKKISSEEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARRFPSE 227
Query: 648 EEE 650
EE
Sbjct: 228 PEE 230
Score = 34.3 bits (79), Expect = 0.22
Identities = 15/80 (18%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 581 DEIGSPRIENII--------QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
+ G +E + + R +R ++ EEE +EE EE + +
Sbjct: 151 ERHGVEEVERFLDSCHAIMEYGVDRYKRPKKISSEEERARQEEREEYLQSQVNDLWRTLP 210
Query: 633 EEEEEEEEEEEEEEEEEEEE 652
++ E ++ E EE
Sbjct: 211 KKPGEAAVKDARRFPSEPEE 230
Score = 31.6 bits (72), Expect = 1.5
Identities = 11/48 (22%), Positives = 22/48 (45%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EEE +EE EE + + ++ ++ E ++ E EE++
Sbjct: 185 EEERARQEEREEYLQSQVNDLWRTLPKKPGEAAVKDARRFPSEPEEDL 232
>gnl|CDD|219311 pfam07149, Pes-10, Pes-10. This family consists of several
Caenorhabditis elegans pes-10 and related proteins.
Members of this family are typically around 400 residues
in length. The function of this family is unknown.
Length = 370
Score = 38.3 bits (89), Expect = 0.013
Identities = 29/110 (26%), Positives = 47/110 (42%), Gaps = 14/110 (12%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ E +LI + ++ ++E EE+E+EEE ++ + EE E E +EE +E E
Sbjct: 147 QFEEADELIPKVDQLLKDEVLEEDEQEEEADKLLDNLEEHSETESGIFTDEERDEGNYEW 206
Query: 647 EEEE-------EEVRGGGKEEIS-------LHFYVLYVLSKGKIAGLFYL 682
E + ++ G E IS Y L + K I L Y
Sbjct: 207 AVMEICMVFLAQCIKTGNSEVISAAIIFTGTFRYPLALYRKYDIQYLIYA 256
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 38.5 bits (90), Expect = 0.013
Identities = 19/75 (25%), Positives = 37/75 (49%), Gaps = 9/75 (12%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE--------- 651
+E+ E ++ ++ E E++ E+E + E + E++E+E EE E+ EE ++
Sbjct: 272 DEKFERDKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQ 331
Query: 652 EVRGGGKEEISLHFY 666
+ G K FY
Sbjct: 332 LIEEGLKSVRLADFY 346
Score = 38.1 bits (89), Expect = 0.016
Identities = 12/73 (16%), Positives = 31/73 (42%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
D+ + S + + ++ + + + + E +E E + +++ E ++ EE
Sbjct: 356 DKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEI 415
Query: 639 EEEEEEEEEEEEE 651
EE EE + +
Sbjct: 416 REELIEEGLLKSK 428
Score = 37.4 bits (87), Expect = 0.027
Identities = 12/62 (19%), Positives = 24/62 (38%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
Q + ++ + + + + E +E E + E+ E ++ EE EE EE
Sbjct: 364 NAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEG 423
Query: 651 EE 652
Sbjct: 424 LL 425
Score = 36.2 bits (84), Expect = 0.062
Identities = 13/69 (18%), Positives = 28/69 (40%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
EN + ++ ++ + + + + E +E E E+ E ++ EE EE
Sbjct: 360 TPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREEL 419
Query: 646 EEEEEEEVR 654
EE + +
Sbjct: 420 IEEGLLKSK 428
Score = 32.7 bits (75), Expect = 0.68
Identities = 15/73 (20%), Positives = 36/73 (49%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
++ S + + + +++ E + E++E+E EE E+ EE ++ E + + EE +
Sbjct: 282 QLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKSVR 341
Query: 642 EEEEEEEEEEEVR 654
+ EE ++
Sbjct: 342 LADFYGNEEIKIE 354
Score = 32.4 bits (74), Expect = 0.83
Identities = 13/63 (20%), Positives = 31/63 (49%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ + E +E E + E+ E ++ EE++EE EE + ++++ +++E
Sbjct: 378 AKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEW 437
Query: 649 EEE 651
E+
Sbjct: 438 FEK 440
Score = 31.6 bits (72), Expect = 1.8
Identities = 16/69 (23%), Positives = 32/69 (46%), Gaps = 1/69 (1%)
Query: 587 RIENIIQLIRRG-EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
++E ++ + E++E+E EE E+ EE ++ E +Q EE + + E
Sbjct: 290 KLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGLKSVRLADFYGNE 349
Query: 646 EEEEEEEVR 654
E + E +
Sbjct: 350 EIKIELDKS 358
Score = 30.4 bits (69), Expect = 4.0
Identities = 14/83 (16%), Positives = 34/83 (40%)
Query: 557 DNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEE 616
P+ N + + K+ + ++ I + E+ E ++ EE E
Sbjct: 358 SKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIRE 417
Query: 617 EEEEEEEEEVQEEEEEEEEEEEE 639
E EE + ++++ +++E E+
Sbjct: 418 ELIEEGLLKSKKKKRKKKEWFEK 440
Score = 29.7 bits (67), Expect = 6.0
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ L R+ +E E + E+ E ++ E EE EE + ++++ +++E E
Sbjct: 380 VNLDRQLSELKEAIAYYESAKTALEKAEGKKAIEEIREELIEEGLLKSKKKKRKKKEWFE 439
Query: 652 EVR 654
+ R
Sbjct: 440 KFR 442
Score = 29.3 bits (66), Expect = 9.0
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 9/74 (12%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE---------EEEE 639
+ I QL E++ E+E ++ E + E++E+E EE E+ EE ++ E EE
Sbjct: 278 DKIKQLASELEKKLEKELKKLENKLEKQEDELEELEKAAEELRQKGELLYANLQLIEEGL 337
Query: 640 EEEEEEEEEEEEEV 653
+ + EE+
Sbjct: 338 KSVRLADFYGNEEI 351
>gnl|CDD|237192 PRK12758, PRK12758, DNA topoisomerase IV subunit A; Provisional.
Length = 869
Score = 38.4 bits (90), Expect = 0.013
Identities = 23/89 (25%), Positives = 36/89 (40%), Gaps = 11/89 (12%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEE-----------EEEEEEEEEEEEEVQEEEEEEE 634
PRIE + ER E + EE + + E E + EE EEE
Sbjct: 780 PRIEIVFGKGDGKERPNLEIDLEEFIAVKGIKAKGNRLTTYKVKTINELEPLPYEEPEEE 839
Query: 635 EEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EE EE + E+ + E+++ ++ L
Sbjct: 840 TAEEPEEVDPEDVKSEDDIDDEDTGQLGL 868
Score = 29.6 bits (67), Expect = 6.2
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 571 SIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
++K K + + +++ I +L E EEE EE EE + E+ + E++ +
Sbjct: 806 AVKGIKAKGN-RLTTYKVKTINELEPLPYEEPEEETAEEPEEVDPEDVKSEDDID 859
>gnl|CDD|219111 pfam06625, DUF1151, Protein of unknown function (DUF1151). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 35.9 bits (83), Expect = 0.015
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+R + +E++EEEE + + E E E + ++ E+ E E+ +E+EE+E+ E +V+
Sbjct: 59 KRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQEQIPEFLKVKA 118
Score = 32.5 bits (74), Expect = 0.25
Identities = 17/57 (29%), Positives = 35/57 (61%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+L R E+ + ++ +E++EEEE + + E E + ++ E+ E E+ +E+EE+E
Sbjct: 52 ELQRVLEKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQE 108
Score = 31.7 bits (72), Expect = 0.36
Identities = 15/51 (29%), Positives = 34/51 (66%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+ + ++ +E++EEEE + + E++ E + ++ E+ E E+ +E+EE+E
Sbjct: 58 EKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQE 108
Score = 30.5 bits (69), Expect = 1.1
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+ + ++ +E++EEEE + + E +E + ++ E+ E E+ +E+EE+E
Sbjct: 58 EKRKRDQVLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQE 108
Score = 28.6 bits (64), Expect = 4.4
Identities = 14/48 (29%), Positives = 31/48 (64%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+ + ++EEEE + + E E E + ++ E+++ E+ +E+EE+E+ E
Sbjct: 65 VLKEQKEEEEAKRLQSELERELMKRAQKLEQLELEKAKEDEEQEQIPE 112
>gnl|CDD|227880 COG5593, COG5593, Nucleic-acid-binding protein possibly involved in
ribosomal biogenesis [Translation, ribosomal structure
and biogenesis].
Length = 821
Score = 38.1 bits (88), Expect = 0.015
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E +E ++EE +E + E++ E EE+E EEE+EEEE +E
Sbjct: 739 EGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKE 788
Score = 37.3 bits (86), Expect = 0.027
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE------EEEEEEEEEEEEEEEEEE 652
+ ++E+ + E +E ++EE +E+ + E+ E EE+E EEE+EEEE
Sbjct: 729 DAIDDEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEE 785
Score = 37.3 bits (86), Expect = 0.031
Identities = 18/52 (34%), Positives = 30/52 (57%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ E +E ++EE +E + E++ + E EE+E EEE+EEEE +E
Sbjct: 737 KSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKE 788
Score = 36.6 bits (84), Expect = 0.046
Identities = 19/51 (37%), Positives = 29/51 (56%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E +E ++EE +E + E+ + E EE+E EEE+EEEE +EV
Sbjct: 739 EGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEEENKEV 789
Score = 36.2 bits (83), Expect = 0.058
Identities = 22/74 (29%), Positives = 37/74 (50%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
SD P+++ I + E +E ++EE +E + E++ + E EE+E
Sbjct: 718 SDSTSDDEPKLDAIDDEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESS 777
Query: 638 EEEEEEEEEEEEEE 651
EEE+EEEE +E
Sbjct: 778 EEEKEEEENKEVSA 791
Score = 32.7 bits (74), Expect = 0.84
Identities = 16/56 (28%), Positives = 30/56 (53%), Gaps = 4/56 (7%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE----EEEEEEE 652
+ ++E+ + E +E ++EE +E + E++ + E EE EEE+EEE
Sbjct: 729 DAIDDEDAKSEGSQESDQEEGLDEIFYSFDGEQDNSDSFAESSEEDESSEEEKEEE 784
Score = 31.9 bits (72), Expect = 1.3
Identities = 13/48 (27%), Positives = 28/48 (58%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E++ + E EE+E EEE+EEEE +E + ++++ + ++
Sbjct: 757 FDGEQDNSDSFAESSEEDESSEEEKEEEENKEVSAKRAKKKQRKNMLK 804
>gnl|CDD|129416 TIGR00316, cdhC, CO dehydrogenase/CO-methylating acetyl-CoA
synthase complex, beta subunit. Nomenclature follows
the description for Methanosarcina thermophila. The
CO-methylating acetyl-CoA synthase is considered the
defining enzyme of the Wood-Ljungdahl pathway, used for
acetate catabolism by sulfate reducing bacteria but for
acetate biosynthesis by acetogenic bacteria such as
oorella thermoacetica (f. Clostridium thermoaceticum)
[Energy metabolism, Chemoautotrophy].
Length = 458
Score = 37.9 bits (88), Expect = 0.015
Identities = 25/76 (32%), Positives = 33/76 (43%), Gaps = 12/76 (15%)
Query: 553 QSLWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEE 612
+ L D + KT K K E G P ++ ++ RE +EEE EEEEE
Sbjct: 366 EDLRDKIATEEDAKTTDELRKFLK-----EKGHPVVKRVV-------REVDEEEIEEEEE 413
Query: 613 EEEEEEEEEEEEEVQE 628
+ EE E E EV
Sbjct: 414 AMQPEEMEMEGFEVPA 429
Score = 37.5 bits (87), Expect = 0.020
Identities = 21/67 (31%), Positives = 34/67 (50%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + I R++ EE+ + +E + +E+ V + E +EEE EEEEE +
Sbjct: 358 ERVKDAIPEDLRDKIATEEDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQP 417
Query: 649 EEEEVRG 655
EE E+ G
Sbjct: 418 EEMEMEG 424
Score = 36.8 bits (85), Expect = 0.041
Identities = 20/53 (37%), Positives = 30/53 (56%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE+ + +E + +E+ + V+E +EEE EEEEE + EE E E EV
Sbjct: 375 EEDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEGFEV 427
Score = 36.0 bits (83), Expect = 0.063
Identities = 18/54 (33%), Positives = 27/54 (50%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
D+I + +R+ +E+ + E +EEE EEEEE +Q EE E E
Sbjct: 370 DKIATEEDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEME 423
Score = 33.3 bits (76), Expect = 0.45
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 634 EEEEEEEEEEEEEEEEEEEVRGGGKE 659
E +EEE EEEEE + EE+ G E
Sbjct: 401 REVDEEEIEEEEEAMQPEEMEMEGFE 426
Score = 31.7 bits (72), Expect = 1.3
Identities = 16/50 (32%), Positives = 25/50 (50%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
EE+ + +E + +E+ + E +EEE EEEEE + EE G
Sbjct: 375 EEDAKTTDELRKFLKEKGHPVVKRVVREVDEEEIEEEEEAMQPEEMEMEG 424
>gnl|CDD|152814 pfam12379, DUF3655, Protein of unknown function (DUF3655). This
domain family is found in viruses, and is approximately
70 amino acids in length. The family is found in
association with pfam08716, pfam01661, pfam05409,
pfam06471, pfam08717, pfam06478, pfam09401, pfam06460,
pfam08715, pfam08710.
Length = 70
Score = 34.6 bits (79), Expect = 0.015
Identities = 22/52 (42%), Positives = 29/52 (55%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+EEE+ EE E EEEE EE E E +++ + E E + EEEEEE
Sbjct: 9 DEEEDCEEYECEEEEIEETCEHEYGTEDDYKGLPLEFGASTEIVQVEEEEEE 60
Score = 33.9 bits (77), Expect = 0.027
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 12/62 (19%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEE------------EEEEEEEEEEEEEEEEEEE 649
+EEE+ EE E EEEE EE E E E++ E + EEEEEE+ ++ E
Sbjct: 9 DEEEDCEEYECEEEEIEETCEHEYGTEDDYKGLPLEFGASTEIVQVEEEEEEDWLDDATE 68
Query: 650 EE 651
Sbjct: 69 AS 70
Score = 33.9 bits (77), Expect = 0.029
Identities = 23/60 (38%), Positives = 32/60 (53%), Gaps = 10/60 (16%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE----------EEEEEEEEEEEEEEEEEEE 652
+EEE+ EE E EEEE EE E E E++ + E + EEEEEE+ ++ E
Sbjct: 9 DEEEDCEEYECEEEEIEETCEHEYGTEDDYKGLPLEFGASTEIVQVEEEEEEDWLDDATE 68
Score = 32.7 bits (74), Expect = 0.059
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E + EE E EEEE EE E E E++ + E E + EEEEEE+
Sbjct: 11 EEDCEEYECEEEEIEETCEHEYGTEDDYKGLPLEFGASTEIVQVEEEEEED 61
Score = 27.7 bits (61), Expect = 4.5
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+E ++ EE E EEEE EE E E E++ +G
Sbjct: 9 DEEEDCEEYECEEEEIEETCEHEYGTEDDYKG 40
Score = 27.3 bits (60), Expect = 6.3
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 632 EEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+EEE+ EE E EEEE EE E G +++
Sbjct: 9 DEEEDCEEYECEEEEIEETCEHEYGTEDD 37
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 37.7 bits (88), Expect = 0.015
Identities = 20/77 (25%), Positives = 37/77 (48%), Gaps = 8/77 (10%)
Query: 586 PRIE----NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE----EEEE 637
P +E ++ EEEE E +++ + E+ E E Q EE E EE+E
Sbjct: 131 PILEVLVGKTLEQALLEVLEEEELAELRQQQRQFEQRRNAELAETQRLEEAERRRREEKE 190
Query: 638 EEEEEEEEEEEEEEEVR 654
+++++E ++ E+E
Sbjct: 191 RRKKQDKERKQREKETA 207
>gnl|CDD|218215 pfam04696, Pinin_SDK_memA, pinin/SDK/memA/ protein conserved
region. Members of this family have very varied
localisations within the eukaryotic cell. pinin is known
to localise at the desmosomes and is implicated in
anchoring intermediate filaments to the desmosomal
plaque. SDK2/3 is a dynamically localised nuclear
protein thought to be involved in modulation of
alternative pre-mRNA splicing. memA is a tumour marker
preferentially expressed in human melanoma cell lines. A
common feature of the members of this family is that
they may all participate in regulating protein-protein
interactions.
Length = 131
Score = 35.9 bits (83), Expect = 0.016
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+L + +R E E++ EE+E++E EE +E+ E+ EE ++ E + E++ E+E+
Sbjct: 26 EESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKL 85
Query: 650 EEE 652
+E
Sbjct: 86 QET 88
Score = 35.5 bits (82), Expect = 0.019
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
RR E E++ EE+E++E EE +E+ E EE + ++ E + E++ E+E+ +E E
Sbjct: 36 RRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQETWHE 91
Score = 33.6 bits (77), Expect = 0.089
Identities = 17/49 (34%), Positives = 28/49 (57%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE +E+ E E++ E QE++E EE +E+ E EE ++ E+R
Sbjct: 26 EESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELR 74
Score = 32.1 bits (73), Expect = 0.34
Identities = 15/54 (27%), Positives = 30/54 (55%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EE +E+ E E++++E+E++E EE +E+ E EE +++ E+
Sbjct: 26 EESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQK 79
Score = 32.1 bits (73), Expect = 0.37
Identities = 17/56 (30%), Positives = 33/56 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+ E E++ EE+E++E EE +E+ EE ++ E + E++ E+E+ +E
Sbjct: 34 EKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQETW 89
Score = 30.1 bits (68), Expect = 1.4
Identities = 15/52 (28%), Positives = 31/52 (59%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
I + E+E++E EE +E+ E EE ++++ + E++ E+E+ +E E
Sbjct: 40 IEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQETWHE 91
Score = 29.8 bits (67), Expect = 2.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
R I Q + E++E EE +E+ E EE ++ E E++ E+E+ +E E
Sbjct: 36 RRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQETWHE 91
Score = 29.4 bits (66), Expect = 2.8
Identities = 16/51 (31%), Positives = 32/51 (62%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E++ EE+E++E EE +E+ E E + ++ E + E++ E+E+ +E E
Sbjct: 41 EQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQKMEDEKLQETWHE 91
Score = 29.0 bits (65), Expect = 3.4
Identities = 19/77 (24%), Positives = 36/77 (46%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+Q + E +E+ E E++ EE+E++E E +E+ E EE ++ E + E++
Sbjct: 20 LQKFSQEESRLTSKEKRRAEIEQKLEEQEKQEREELRKEKRELFEERRRKQLELRKLEQK 79
Query: 652 EVRGGGKEEISLHFYVL 668
+E H L
Sbjct: 80 MEDEKLQETWHEHNLAL 96
>gnl|CDD|219236 pfam06949, DUF1292, Protein of unknown function (DUF1292). This
family consists of several hypothetical bacterial
proteins of around 90 residues in length. The function
of this family is unknown.
Length = 74
Score = 34.5 bits (80), Expect = 0.016
Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 7/61 (11%)
Query: 600 REEEEEEEEEEEEEEEE-------EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E E + E E +E EEE+E+ EV + EE+E+ EEE E++EE +
Sbjct: 4 NEVEFEVLDTFEVEGKEYILLLPVGEEEDEDIEVYIFKIEEDEDGEEELLPIEDDEEWDM 63
Query: 653 V 653
V
Sbjct: 64 V 64
Score = 32.5 bits (75), Expect = 0.087
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 4/49 (8%)
Query: 601 EEEEEEEEEEE----EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
EEE+E+ E + EE+E+ EEE ++++EE + EE E EE
Sbjct: 26 PVGEEEDEDIEVYIFKIEEDEDGEEELLPIEDDEEWDMVEEAFETLLEE 74
Score = 31.8 bits (73), Expect = 0.14
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
Query: 602 EEEEEEEEEEE----EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
EEE+E+ E + EE+E+ EEE E++EE + EE E EE
Sbjct: 26 PVGEEEDEDIEVYIFKIEEDEDGEEELLPIEDDEEWDMVEEAFETLLEE 74
Score = 31.8 bits (73), Expect = 0.16
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
EEE+E+ E + EE+E+ EEE + E++EE + EE E EE
Sbjct: 28 GEEEDEDIEVYIFKIEEDEDGEEELLPIEDDEEWDMVEEAFETLLEE 74
Score = 31.4 bits (72), Expect = 0.18
Identities = 19/48 (39%), Positives = 28/48 (58%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EEE+E+ E + EE+E+ EEE+ E++EE + EE E EE
Sbjct: 27 VGEEEDEDIEVYIFKIEEDEDGEEELLPIEDDEEWDMVEEAFETLLEE 74
Score = 31.4 bits (72), Expect = 0.22
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EEE+E+ E + EE+E+ EEE E++EE + EE
Sbjct: 26 PVGEEEDEDIEVYIFKIEEDEDGEEELLPIEDDEEWDMVEEA 67
Score = 30.2 bits (69), Expect = 0.60
Identities = 15/41 (36%), Positives = 25/41 (60%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EEE+E+ E +++E+E+ EEE E++EE + EE
Sbjct: 26 PVGEEEDEDIEVYIFKIEEDEDGEEELLPIEDDEEWDMVEE 66
Score = 28.7 bits (65), Expect = 2.1
Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 8/47 (17%)
Query: 598 GEREEEEEE--------EEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
GE E+E+ E +E+ EEE E++EE + V+E E EE
Sbjct: 28 GEEEDEDIEVYIFKIEEDEDGEEELLPIEDDEEWDMVEEAFETLLEE 74
Score = 27.9 bits (63), Expect = 3.7
Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 6/55 (10%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE------EEEEEEEEEEEEV 653
EE E E E + E E +E + EEE+E+ E EE+E+ EEE +
Sbjct: 1 EEGNEVEFEVLDTFEVEGKEYILLLPVGEEEDEDIEVYIFKIEEDEDGEEELLPI 55
>gnl|CDD|129661 TIGR00570, cdk7, CDK-activating kinase assembly factor MAT1. All
proteins in this family for which functions are known
are cyclin dependent protein kinases that are components
of TFIIH, a complex that is involved in nucleotide
excision repair and transcription initiation. Also known
as MAT1 (menage a trois 1). This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 309
Score = 37.5 bits (87), Expect = 0.017
Identities = 18/52 (34%), Positives = 33/52 (63%), Gaps = 1/52 (1%)
Query: 593 QLIRRG-EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+I++ E+ E+EE EE E E+EEEE+ +Q+EEEE++ + + ++
Sbjct: 131 DVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQA 182
Score = 37.1 bits (86), Expect = 0.024
Identities = 19/66 (28%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++ E ++E ++ ++ +E+ E+EE EE E E+EEEE+ ++EEEE++ + +
Sbjct: 120 KKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRK- 178
Query: 656 GGKEEI 661
K+ +
Sbjct: 179 -NKQAL 183
Score = 36.3 bits (84), Expect = 0.037
Identities = 20/63 (31%), Positives = 39/63 (61%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
N I L ++ E ++E ++ ++ +E+ E+EE++E E E+EEEE+ ++EEE
Sbjct: 111 NNIDLENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEE 170
Query: 650 EEE 652
E++
Sbjct: 171 EQQ 173
Score = 34.8 bits (80), Expect = 0.12
Identities = 15/62 (24%), Positives = 37/62 (59%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
I+ ++ ++ ++ +E+ E+EE EE E E+ +EE+ ++EEEE++ + + ++
Sbjct: 122 IETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQ 181
Query: 652 EV 653
+
Sbjct: 182 AL 183
Score = 34.4 bits (79), Expect = 0.17
Identities = 19/63 (30%), Positives = 38/63 (60%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+EN + I ++E ++ ++ +E+ E+EE EE E ++EEEE+ ++EEEE++
Sbjct: 115 LENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQM 174
Query: 648 EEE 650
+
Sbjct: 175 NKR 177
Score = 33.2 bits (76), Expect = 0.43
Identities = 16/51 (31%), Positives = 29/51 (56%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+IQ + E+EE EE E E+EEEE+ + +EEE++ + + ++
Sbjct: 132 VIQKNKEKSTREQEELEEALEFEKEEEEQRRLLLQKEEEEQQMNKRKNKQA 182
Score = 32.5 bits (74), Expect = 0.77
Identities = 22/79 (27%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 558 NVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEE 617
N+ N L+ + I+ ++ ++D I +N + R E EE E E+EEEE+
Sbjct: 108 NLTNNIDLENTKKKIETYQKENKDVI----QKNKEKSTREQEELEEALEFEKEEEEQRRL 163
Query: 618 EEEEEEEEVQEEEEEEEEE 636
++EEEE Q + + ++
Sbjct: 164 LLQKEEEEQQMNKRKNKQA 182
Score = 31.7 bits (72), Expect = 1.2
Identities = 21/72 (29%), Positives = 42/72 (58%), Gaps = 5/72 (6%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE- 646
+E+I+ + E +++ E ++E ++ ++ +E+ E+EE EE E E+EEEE+
Sbjct: 102 VEDIVYNLTNNIDLENTKKKIETYQKENKDVIQKNKEKSTREQEELEEALEFEKEEEEQR 161
Query: 647 ----EEEEEEVR 654
++EEEE +
Sbjct: 162 RLLLQKEEEEQQ 173
>gnl|CDD|234767 PRK00448, polC, DNA polymerase III PolC; Validated.
Length = 1437
Score = 38.3 bits (90), Expect = 0.017
Identities = 16/59 (27%), Positives = 36/59 (61%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+ E ++ +EE E+ E ++EEE+E+ +E E ++ E E++++ + + +E GK+
Sbjct: 162 DFEIDDSKEELEKFEAQKEEEDEKLAKEALEAMKKLEAEKKKQSKNFDPKEGPVQIGKK 220
>gnl|CDD|222948 PHA02941, PHA02941, hypothetical protein; Provisional.
Length = 356
Score = 37.6 bits (87), Expect = 0.018
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE+E ++E +E+ +EE EE +E++EEEE EEEEE + V+
Sbjct: 308 GEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEENDTVK 354
Score = 36.9 bits (85), Expect = 0.029
Identities = 19/42 (45%), Positives = 28/42 (66%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EE+E ++E +E+ + EE EE +E++EEEE EEEEE
Sbjct: 308 GEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEE 349
Score = 33.8 bits (77), Expect = 0.32
Identities = 17/43 (39%), Positives = 27/43 (62%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EE+E ++E +E++ +EE EE +E++EEEE EEE
Sbjct: 308 GEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEEN 350
Score = 32.6 bits (74), Expect = 0.64
Identities = 22/57 (38%), Positives = 32/57 (56%), Gaps = 5/57 (8%)
Query: 576 KTSDQD-----EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ 627
K + +D E P+ E+ QL +EE EE +E++EEEE EEEEE + V+
Sbjct: 298 KVAAKDLILGGEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEENDTVK 354
Score = 31.1 bits (70), Expect = 2.2
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 621 EEEEEVQEEEEEE-------EEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
EE+E ++E +E+ +EE EE +E++EEEE EE ++S
Sbjct: 308 GEEKEPKQESQEQLFNPFAIDEEMLEETQEQQEEEENEEEEENDTVKLS 356
>gnl|CDD|146016 pfam03179, V-ATPase_G, Vacuolar (H+)-ATPase G subunit. This family
represents the eukaryotic vacuolar (H+)-ATPase
(V-ATPase) G subunit. V-ATPases generate an acidic
environment in several intracellular compartments.
Correspondingly, they are found as membrane-attached
proteins in several organelles. They are also found in
the plasma membranes of some specialised cells.
V-ATPases consist of peripheral (V1) and membrane
integral (V0) heteromultimeric complexes. The G subunit
is part of the V1 subunit, but is also thought to be
strongly attached to the V0 complex. It may be involved
in the coupling of ATP degradation to H+ translocation.
Length = 105
Score = 35.2 bits (82), Expect = 0.018
Identities = 18/47 (38%), Positives = 27/47 (57%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+EE E+E EE + E E +E E E E E++ E+E EE+ +E
Sbjct: 35 KEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDE 81
Score = 35.2 bits (82), Expect = 0.019
Identities = 21/56 (37%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
Query: 596 RRGER----EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
RR +R +EE E+E EE + E E +E E E E E++ E+E EE+ +E
Sbjct: 26 RRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDE 81
Score = 34.5 bits (80), Expect = 0.030
Identities = 17/46 (36%), Positives = 26/46 (56%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ +EE E+E EE + E E +E E E E E++ E+E EE+
Sbjct: 33 QAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEK 78
Score = 30.2 bits (69), Expect = 0.88
Identities = 17/51 (33%), Positives = 29/51 (56%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ +EE E+E EE + E E + E E E E++ E+E EE+ +E++
Sbjct: 33 QAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELEKKIEKETEEKIDELK 83
Score = 28.3 bits (64), Expect = 3.9
Identities = 20/74 (27%), Positives = 37/74 (50%), Gaps = 4/74 (5%)
Query: 592 IQLIRRGEREEEE--EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE--EEEEEEEEEEE 647
IQ + + E+E E E + + ++ +EE E+E++E + E E E E E
Sbjct: 6 IQQLLQAEKEAAEIVNEARKRRAKRLKQAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRG 65
Query: 648 EEEEEVRGGGKEEI 661
E E+++ +E+I
Sbjct: 66 ELEKKIEKETEEKI 79
Score = 27.9 bits (63), Expect = 6.4
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
Q +EE E+E EE + E E +E E G + E+
Sbjct: 33 QAKEEAEKEIEEYRAQREAEFKEFEAEHSGSRGELE 68
>gnl|CDD|219405 pfam07418, PCEMA1, Acidic phosphoprotein precursor PCEMA1. This
family consists of several acidic phosphoprotein
precursor PCEMA1 sequences which appear to be found
exclusively in Plasmodium chabaudi. PCEMA1 is an antigen
that is associated with the membrane of the infected
erythrocyte throughout the entire intraerythrocytic
cycle. The exact function of this family is unclear.
Length = 286
Score = 37.2 bits (86), Expect = 0.018
Identities = 20/66 (30%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Query: 598 GEREEEEEEEEEE--EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
GE EE ++E E E ++ E + E +E+++ E E + ++ E E E+E E+E
Sbjct: 213 GENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEE 272
Query: 656 GGKEEI 661
EE
Sbjct: 273 EAGEEQ 278
Score = 35.3 bits (81), Expect = 0.078
Identities = 18/65 (27%), Positives = 31/65 (47%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+ E EE ++E E E ++ E + EV+E+ E E + ++ E E E+E
Sbjct: 211 NDGENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEY 270
Query: 658 KEEIS 662
+EE
Sbjct: 271 EEEAG 275
Score = 35.3 bits (81), Expect = 0.090
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E + E +E+ E E + ++ E E+E E+E EEE EE+E E++ E
Sbjct: 231 KDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKGE 285
Score = 35.3 bits (81), Expect = 0.095
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ + IRR RE + ++ E E E+E E+E EEE EE+E E++ EE
Sbjct: 238 EVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKGEE 286
Score = 33.3 bits (76), Expect = 0.35
Identities = 21/62 (33%), Positives = 33/62 (53%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E I L E +E+ E E + ++ E E+++E E+E EEE EE+E E++
Sbjct: 225 EVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIEDESEDEYEEEAGEEQENEDKG 284
Query: 649 EE 650
EE
Sbjct: 285 EE 286
Score = 29.9 bits (67), Expect = 3.9
Identities = 14/62 (22%), Positives = 28/62 (45%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
++E + E EE ++E E E + ++ E + E +E+ E E + + + EI
Sbjct: 203 DDEVTSYFNDGENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEI 262
Query: 662 SL 663
Sbjct: 263 ED 264
Score = 29.9 bits (67), Expect = 4.5
Identities = 23/82 (28%), Positives = 31/82 (37%), Gaps = 23/82 (28%)
Query: 601 EEEEEEEEEEEEEEEEEEEEE------EEEEVQE-----------------EEEEEEEEE 637
E + E EE ++E E E + E E E E E+
Sbjct: 205 EVTSYFNDGENEENDDELEAEVISYLKDGENDNEVKEKIRREYREWKGDKANTNETEIED 264
Query: 638 EEEEEEEEEEEEEEEVRGGGKE 659
E E+E EEE EE+E G+E
Sbjct: 265 ESEDEYEEEAGEEQENEDKGEE 286
Score = 29.5 bits (66), Expect = 5.8
Identities = 14/48 (29%), Positives = 25/48 (52%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E++ E++E +EE + E ++E + E EE ++E E EV
Sbjct: 179 EDDASTLHEDDELDEEVTSYLNELDDEVTSYFNDGENEENDDELEAEV 226
Score = 28.7 bits (64), Expect = 9.4
Identities = 14/47 (29%), Positives = 23/47 (48%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E + E++E +EE E ++EV + E EE ++E E E
Sbjct: 179 EDDASTLHEDDELDEEVTSYLNELDDEVTSYFNDGENEENDDELEAE 225
>gnl|CDD|189762 pfam00901, Orbi_VP5, Orbivirus outer capsid protein VP5.
cryoelectron microscopy indicates that VP5 is a trimer
implying that there are 360 copies of VP5 per virion.
Length = 507
Score = 37.7 bits (88), Expect = 0.018
Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)
Query: 581 DEIGSP--RIENIIQL-IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
DE P E +Q ++ ERE++EEE E+ ++ E+ E+ EEV + + E + E
Sbjct: 76 DEPPDPLSPGEQGLQRKLKELEREQKEEEVREKHNKKIIEKFGEDLEEVYKFMKGEAKVE 135
Query: 638 EEEEEEEE 645
EEEE++ E
Sbjct: 136 EEEEKQME 143
>gnl|CDD|217830 pfam03986, Autophagy_N, Autophagocytosis associated protein (Atg3),
N-terminal domain. Autophagocytosis is a
starvation-induced process responsible for transport of
cytoplasmic proteins to the lysosome/vacuole. Atg3 is a
ubiquitin like modifier that is topologically similar to
the canonical E2 enzyme. It catalyzes the conjugation of
Atg8 and phosphatidylethanolamine.
Length = 146
Score = 36.2 bits (84), Expect = 0.018
Identities = 12/68 (17%), Positives = 36/68 (52%), Gaps = 14/68 (20%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEE--------------EEEEEEEVQEEEEEEEEEEEEEE 641
RR ++ E + EE E+E+E++ + +EE++ E +++++ + +
Sbjct: 77 RRAKQMEYGDGAEEIVEDEDEDDGWVTTHGNRDKQKDDIADEEDIPEIGDDDDDVVDSSD 136
Query: 642 EEEEEEEE 649
+E+++++
Sbjct: 137 ADEDDDDD 144
>gnl|CDD|221408 pfam12072, DUF3552, Domain of unknown function (DUF3552). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria, archaea and eukaryotes.
This domain is about 200 amino acids in length. This
domain is found associated with pfam00013, pfam01966.
This domain has a single completely conserved residue A
that may be functionally important.
Length = 201
Score = 36.8 bits (86), Expect = 0.019
Identities = 24/62 (38%), Positives = 41/62 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++EE + ++E E++EE EE+E+E +++ EE+EEE EE EE+++E E + G
Sbjct: 89 QKEETLDRKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEEQQQELERISGLTA 148
Query: 659 EE 660
EE
Sbjct: 149 EE 150
Score = 29.8 bits (68), Expect = 3.1
Identities = 27/74 (36%), Positives = 46/74 (62%), Gaps = 12/74 (16%)
Query: 596 RRGE--REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE---EEEEEEEEE--EE 648
RR E R+E+ ++EE + ++E E++EE ++E+E+E + EE+EEE EE EE
Sbjct: 76 RRNELQRQEKRLLQKEETLDRKDESLEKKEESLEEKEKELAARQQQLEEKEEELEELIEE 135
Query: 649 EEEEVRGGGKEEIS 662
+++E+ E IS
Sbjct: 136 QQQEL-----ERIS 144
>gnl|CDD|217956 pfam04194, PDCD2_C, Programmed cell death protein 2, C-terminal
putative domain.
Length = 165
Score = 36.2 bits (84), Expect = 0.019
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EEEE E EE EE + + EE E+E +E+EE +E E+ + K
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSDDKT 61
Score = 35.5 bits (82), Expect = 0.032
Identities = 18/44 (40%), Positives = 23/44 (52%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
EEEE E EE EE E+ EE E+E +E+EE +E
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDE 51
Score = 35.5 bits (82), Expect = 0.037
Identities = 18/51 (35%), Positives = 27/51 (52%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EEEE E EE EE E + +E E+E +E+EE +E E+ + +
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSD 58
Score = 34.3 bits (79), Expect = 0.089
Identities = 18/51 (35%), Positives = 24/51 (47%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EEEE E EE EE + EE E+E +E+EE +E E+
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSD 58
Score = 34.3 bits (79), Expect = 0.097
Identities = 19/51 (37%), Positives = 27/51 (52%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EEEE E EE EE E + EE E+E +E+EE +E E+ + +
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSD 58
Score = 32.0 bits (73), Expect = 0.49
Identities = 17/39 (43%), Positives = 20/39 (51%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EEE E EE EE E + EE E+ GGGKE+
Sbjct: 8 PEEEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKED 46
Score = 30.5 bits (69), Expect = 1.8
Identities = 16/49 (32%), Positives = 24/49 (48%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E E E EE EE E + EE +E +E+EE +E E+ + +
Sbjct: 10 EEEYETLHAPSLPEEPEEREIDAFEELEKEGGGGKEDEETDESEKAKSD 58
>gnl|CDD|227061 COG4717, COG4717, Uncharacterized conserved protein [Function
unknown].
Length = 984
Score = 37.9 bits (88), Expect = 0.021
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+R +E+ E+E EEE + ++EEEV+ +E EE+ + ++EE
Sbjct: 389 CKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCN 442
Score = 36.0 bits (83), Expect = 0.071
Identities = 18/56 (32%), Positives = 24/56 (42%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ +RE E E + E E E Q E +EEE EE + +EE EE
Sbjct: 737 QLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEE 792
Score = 35.6 bits (82), Expect = 0.096
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
R ++ + E E E + E E E ++ E +EEE EE + +EEV
Sbjct: 733 REEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEV 790
Score = 35.6 bits (82), Expect = 0.12
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 5/71 (7%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE-----EEEEEEEEEEEEEEEEE 645
E E + E + + E ++ +E+ E+E EEE +
Sbjct: 350 EEAAGNGFEAERVHDLRSLECMLRYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQR 409
Query: 646 EEEEEEEVRGG 656
++EEEVR G
Sbjct: 410 LADDEEEVRAG 420
Score = 34.8 bits (80), Expect = 0.16
Identities = 14/68 (20%), Positives = 29/68 (42%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+R + + E+E EEE + ++EEE E EE+ + ++EE +
Sbjct: 387 AYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDR 446
Query: 653 VRGGGKEE 660
+++
Sbjct: 447 RDTAWQKQ 454
Score = 34.4 bits (79), Expect = 0.21
Identities = 14/49 (28%), Positives = 23/49 (46%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
R+E++ + E E ++ E +EEE EE + +EE EE
Sbjct: 744 RLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEE 792
Score = 33.7 bits (77), Expect = 0.35
Identities = 19/63 (30%), Positives = 27/63 (42%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
RE EE++ + E E E + E V E E ++ E +EEE EE E
Sbjct: 729 REAAREEQQLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDE 788
Query: 660 EIS 662
E+
Sbjct: 789 EVE 791
Score = 33.3 bits (76), Expect = 0.57
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E ++ E + +E+ E+E EEE Q ++EEE +E EE+ +V
Sbjct: 380 ELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQV 434
Score = 32.9 bits (75), Expect = 0.68
Identities = 19/62 (30%), Positives = 27/62 (43%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
QL +R R E E + E E E ++ +EEE EE + +EE EE +
Sbjct: 737 QLTQRESRLESLEAQLEGVAAEAYELSASLDQRELKEEELALLEEAIDALDEEVEELHAQ 796
Query: 653 VR 654
V
Sbjct: 797 VA 798
Score = 32.5 bits (74), Expect = 0.82
Identities = 15/60 (25%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
Query: 599 EREEEEEEEEEEEEEEEEEEE----EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R E + + E ++ E + +E+ E+E EEE + ++EEE +E R
Sbjct: 365 LRSLECMLRYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAR 424
Score = 31.7 bits (72), Expect = 1.5
Identities = 14/52 (26%), Positives = 26/52 (50%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+RE ++ E + +E+ E+E EE + ++EEE +E EE+
Sbjct: 378 QRELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIA 429
Score = 31.7 bits (72), Expect = 1.8
Identities = 14/62 (22%), Positives = 27/62 (43%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
+ +E+ E+E EEE + + +EE +E EE+ + ++EEV +
Sbjct: 390 KRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDT 449
Query: 663 LH 664
Sbjct: 450 AW 451
Score = 31.0 bits (70), Expect = 2.6
Identities = 13/68 (19%), Positives = 30/68 (44%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++R + E ++ E + +E+ E+E +E + ++EEE +E EE+
Sbjct: 371 MLRYQSSQRELKQTEAAYCKRLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAA 430
Query: 654 RGGGKEEI 661
++
Sbjct: 431 NSQVIDKE 438
Score = 30.2 bits (68), Expect = 5.0
Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 4/73 (5%)
Query: 593 QLIRRGEREEEEEE----EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+L + E+E EE ++EEE +E EE++ + ++EE + +
Sbjct: 391 RLDEKRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDTA 450
Query: 649 EEEEVRGGGKEEI 661
+++ K+
Sbjct: 451 WQKQRFLREKQTA 463
Score = 29.0 bits (65), Expect = 9.5
Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 2/79 (2%)
Query: 576 KTSDQDEIGSPRIENI--IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
K +DE + + + R E EE+ + ++EE + +++
Sbjct: 395 KRLFEDEAEEEARQRLADDEEEVRAGDEAREEKIAANSQVIDKEEVCNLYDRRDTAWQKQ 454
Query: 634 EEEEEEEEEEEEEEEEEEE 652
E++ E ++ E +
Sbjct: 455 RFLREKQTAFERQKTEHTK 473
>gnl|CDD|162338 TIGR01398, FlhA, flagellar biosynthesis protein FlhA. This model
describes flagellar biosynthesis protein FlhA, one of a
large number of genes associated with the biosynthesis
of functional bacterial flagella. Homologs of many such
proteins, including FlhA, function in type III protein
secretion systems. A separate model describes InvA
(Salmonella enterica), LcrD (Yersinia enterocolitica),
HrcV (Xanthomonas), etc., all of which score below the
noise cutoff for this model [Cellular processes,
Chemotaxis and motility].
Length = 678
Score = 37.6 bits (88), Expect = 0.021
Identities = 16/44 (36%), Positives = 24/44 (54%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
L RR ++EEE E + +EE EEEEE ++ ++ E E
Sbjct: 307 WYLRRRSKQEEEAAAEAAKAQEEAAEEEEESINDILALDDLELE 350
Score = 34.2 bits (79), Expect = 0.24
Identities = 12/30 (40%), Positives = 16/30 (53%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
QEEE E + +EE EEEEE ++
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDI 341
Score = 31.5 bits (72), Expect = 2.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 30.7 bits (70), Expect = 2.8
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ ++EEE E + +EE EEEEE
Sbjct: 310 RRRSKQEEEAAAEAAKAQEEAAEEEEE 336
Score = 30.7 bits (70), Expect = 3.0
Identities = 11/37 (29%), Positives = 19/37 (51%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++EEE E + +EE EEEEE + +++
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESINDILALDDLE 348
Score = 30.3 bits (69), Expect = 4.0
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
++EEE E + +E EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 29.9 bits (68), Expect = 4.9
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 29.5 bits (67), Expect = 6.3
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
++EEE E + QEE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
Score = 29.5 bits (67), Expect = 7.1
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
++EEE E + +EE EEEEE +
Sbjct: 312 RSKQEEEAAAEAAKAQEEAAEEEEESIND 340
>gnl|CDD|215212 PLN02372, PLN02372, violaxanthin de-epoxidase.
Length = 455
Score = 37.5 bits (87), Expect = 0.021
Identities = 23/63 (36%), Positives = 35/63 (55%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE E+ +E + EEE E+E E+ +EEE + EE +E E++EE ++ KEE
Sbjct: 371 EEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEE 430
Query: 661 ISL 663
L
Sbjct: 431 KEL 433
Score = 37.1 bits (86), Expect = 0.025
Identities = 21/62 (33%), Positives = 37/62 (59%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ I++ R+ E E E+E E+ +EEE + EE ++E E++EE +E +EE+E
Sbjct: 375 KTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELL 434
Query: 649 EE 650
E+
Sbjct: 435 EK 436
Score = 34.4 bits (79), Expect = 0.18
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 9/78 (11%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE--VQEEEEEEEEEEEEEEEE 643
P +E + + + GE+ +E + EEE E+E E+ +EEE + EE +E E++EE
Sbjct: 361 PLLERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEE 420
Query: 644 -------EEEEEEEEEVR 654
+EE+E E+++
Sbjct: 421 NFLKELSKEEKELLEKLK 438
Score = 32.1 bits (73), Expect = 0.97
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E + EEE E+E E+ +EEE + EE +E E++EE +E +EE+E +
Sbjct: 380 EARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSKEEKELLEKLKM 439
Query: 659 E 659
E
Sbjct: 440 E 440
Score = 31.7 bits (72), Expect = 1.5
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 7/79 (8%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEE-------EEEEEEEEEEEEEEVQEEEE 631
D +E ++ Q+ E+E E+ +EEE EE +E E++EE ++E +
Sbjct: 369 DVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKRVALEEGLKELEQDEENFLKELSK 428
Query: 632 EEEEEEEEEEEEEEEEEEE 650
EE+E E+ + E E E+
Sbjct: 429 EEKELLEKLKMEASEVEKL 447
>gnl|CDD|237035 PRK12280, rplW, 50S ribosomal protein L23; Reviewed.
Length = 158
Score = 35.9 bits (83), Expect = 0.021
Identities = 12/34 (35%), Positives = 26/34 (76%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
EE E+E++E +E EE+E + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 35.5 bits (82), Expect = 0.028
Identities = 11/34 (32%), Positives = 25/34 (73%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
EE E+E++E +E EE + + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 35.5 bits (82), Expect = 0.029
Identities = 13/34 (38%), Positives = 27/34 (79%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE E+E++EV +E EE+E + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 35.1 bits (81), Expect = 0.039
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE E+ Q+E +E EE+E + ++E++E++E+
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEK 124
Score = 34.7 bits (80), Expect = 0.063
Identities = 13/35 (37%), Positives = 26/35 (74%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE E+E +E +E EE+E + ++E++E++E++V
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKV 126
Score = 34.4 bits (79), Expect = 0.069
Identities = 11/34 (32%), Positives = 25/34 (73%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE E+E++ +E EE+E + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 34.4 bits (79), Expect = 0.069
Identities = 12/34 (35%), Positives = 26/34 (76%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EE E+E++E +E EE+E + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 34.4 bits (79), Expect = 0.071
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
EE E+E++E +E EE+E + +E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 34.4 bits (79), Expect = 0.089
Identities = 11/34 (32%), Positives = 26/34 (76%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
EE E+E++E +E +E+E + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 34.0 bits (78), Expect = 0.11
Identities = 11/34 (32%), Positives = 25/34 (73%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
EE E+E++E +E EE+ + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 34.0 bits (78), Expect = 0.11
Identities = 12/34 (35%), Positives = 26/34 (76%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
EE E+E++E +E EE+E + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 33.2 bits (76), Expect = 0.20
Identities = 11/34 (32%), Positives = 25/34 (73%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
EE E+E++E + EE+E + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 33.2 bits (76), Expect = 0.20
Identities = 12/34 (35%), Positives = 25/34 (73%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
EE E+E++E +E EE+E ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 33.2 bits (76), Expect = 0.20
Identities = 11/34 (32%), Positives = 24/34 (70%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE E +++E +E EE+E + ++E++E++E +
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 33.2 bits (76), Expect = 0.20
Identities = 11/34 (32%), Positives = 25/34 (73%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
EE E+E++E + EE+E + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 33.2 bits (76), Expect = 0.22
Identities = 11/34 (32%), Positives = 25/34 (73%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
EE E+E++E +E EE+E + ++ ++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 32.8 bits (75), Expect = 0.30
Identities = 11/39 (28%), Positives = 25/39 (64%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EE ++E++E +E EE+E + ++E++E+ E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKKVAEKL 130
Score = 32.4 bits (74), Expect = 0.35
Identities = 11/34 (32%), Positives = 25/34 (73%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
EE E+E++E +E EE+E + + +++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 32.4 bits (74), Expect = 0.36
Identities = 12/34 (35%), Positives = 27/34 (79%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
EE E+E++E +E EE+E ++ ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 32.0 bits (73), Expect = 0.42
Identities = 11/34 (32%), Positives = 25/34 (73%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
EE E+E++E +E E +E + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 31.7 bits (72), Expect = 0.58
Identities = 11/34 (32%), Positives = 25/34 (73%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE E+E+ + +E EE+E + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 31.7 bits (72), Expect = 0.59
Identities = 10/34 (29%), Positives = 24/34 (70%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
E E+E++E +E EE+E + ++E+ +++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 31.3 bits (71), Expect = 0.76
Identities = 10/34 (29%), Positives = 25/34 (73%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
EE E+E++E +E ++E + ++E++E++E++
Sbjct: 92 PEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
Score = 30.1 bits (68), Expect = 2.2
Identities = 10/38 (26%), Positives = 24/38 (63%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
I L +E++E +E EE+E + ++E++E+ +++
Sbjct: 88 INLFPEESEKEQKEVSKETEEKEAIKAKKEKKEKKEKK 125
>gnl|CDD|148679 pfam07218, RAP1, Rhoptry-associated protein 1 (RAP-1). This family
consists of several rhoptry-associated protein 1 (RAP-1)
sequences which appear to be specific to Plasmodium
falciparum.
Length = 790
Score = 37.7 bits (87), Expect = 0.021
Identities = 23/61 (37%), Positives = 38/61 (62%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EEEE E +EE EE EE+++E E++ E +EE+ + +EE + E + ++ + GG E
Sbjct: 242 EEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKFDEEIKFIEHDVKDRNIAGGFSEFF 301
Query: 662 S 662
S
Sbjct: 302 S 302
Score = 29.7 bits (66), Expect = 6.7
Identities = 20/54 (37%), Positives = 34/54 (62%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E+ EEE + + + ++ EEEE E+ EE EE EE+++E E+ E +EE+ +
Sbjct: 224 EKLEEEIDILKNDGDKVAEEEEFELDEEHEEAEEDKKEALEKIGAEGDEEKFKF 277
>gnl|CDD|218806 pfam05911, DUF869, Plant protein of unknown function (DUF869).
This family consists of a number of sequences found in
Arabidopsis thaliana, Oryza sativa and Lycopersicon
esculentum (Tomato). The function of this family is
unknown.
Length = 767
Score = 37.6 bits (87), Expect = 0.023
Identities = 17/62 (27%), Positives = 35/62 (56%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
L + E+E E+E + +E + E EE+++ E+EE ++ +EEE++ ++E
Sbjct: 671 AEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQKLDEEEQKIKQE 730
Query: 649 EE 650
+E
Sbjct: 731 KE 732
Score = 35.7 bits (82), Expect = 0.085
Identities = 16/78 (20%), Positives = 37/78 (47%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+++ E + + + ++ E E + +E+ E+E E+E + +E +
Sbjct: 643 ESNSLAETQLKCMVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCR 702
Query: 636 EEEEEEEEEEEEEEEEEV 653
E EE+ E E+EE +++
Sbjct: 703 ELEEKIERAEQEENMQKL 720
Score = 33.8 bits (77), Expect = 0.40
Identities = 17/71 (23%), Positives = 39/71 (54%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E R +++ + + + E+E E+E + +E + E++E+ E E+EE ++
Sbjct: 660 ESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQK 719
Query: 642 EEEEEEEEEEE 652
+EEE++ ++E
Sbjct: 720 LDEEEQKIKQE 730
Score = 33.0 bits (75), Expect = 0.67
Identities = 19/65 (29%), Positives = 31/65 (47%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
L R + E E + +E+ E+E E+E + QE + E EE+ E E+EE ++
Sbjct: 662 LELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEENMQKLD 721
Query: 654 RGGGK 658
K
Sbjct: 722 EEEQK 726
Score = 31.1 bits (70), Expect = 2.2
Identities = 17/69 (24%), Positives = 34/69 (49%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E ++ E E + +E+ E+E E+ ++ +E + E EE+ E E+EE
Sbjct: 657 ESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIERAEQEEN 716
Query: 653 VRGGGKEEI 661
++ +EE
Sbjct: 717 MQKLDEEEQ 725
Score = 30.7 bits (69), Expect = 3.4
Identities = 15/58 (25%), Positives = 27/58 (46%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E E E ++ E E + +E+ E+E E+E + +E + E EE+ R
Sbjct: 653 KCMVESYESLELRAKDLEAEHKSLQEKISSLEDELEKERQNHQELIAKCRELEEKIER 710
>gnl|CDD|216269 pfam01056, Myc_N, Myc amino-terminal region. The myc family
belongs to the basic helix-loop-helix leucine zipper
class of transcription factors, see pfam00010. Myc forms
a heterodimer with Max, and this complex regulates cell
growth through direct activation of genes involved in
cell replication. Mutations in the C-terminal 20
residues of this domain cause unique changes in the
induction of apoptosis, transformation, and G2 arrest.
Length = 329
Score = 37.2 bits (86), Expect = 0.023
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ E EE+EEEEEEEEEEEE + V E+ +
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKA 260
Score = 37.2 bits (86), Expect = 0.024
Identities = 17/38 (44%), Positives = 22/38 (57%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+ E EE+EEEEEEEEEEEE +V E+ +
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDVVTVEKRRSSSNRKA 260
Score = 36.1 bits (83), Expect = 0.051
Identities = 16/22 (72%), Positives = 17/22 (77%)
Query: 597 RGEREEEEEEEEEEEEEEEEEE 618
G E EE+EEEEEEEEEEEE
Sbjct: 222 SGSDSESEEDEEEEEEEEEEEE 243
Score = 36.1 bits (83), Expect = 0.054
Identities = 16/24 (66%), Positives = 19/24 (79%)
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEV 653
+ E EE+EEEEEEEEEEEE +V
Sbjct: 223 GSDSESEEDEEEEEEEEEEEEIDV 246
Score = 35.7 bits (82), Expect = 0.063
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 600 REEEEEEEEEEEEEEEEEEEEE 621
+ E EE+EEEEEEEEEEEE
Sbjct: 222 SGSDSESEEDEEEEEEEEEEEE 243
Score = 35.3 bits (81), Expect = 0.100
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 628 EEEEEEEEEEEEEEEEEEEEE 648
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 35.3 bits (81), Expect = 0.100
Identities = 15/21 (71%), Positives = 17/21 (80%)
Query: 629 EEEEEEEEEEEEEEEEEEEEE 649
+ E EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 33.4 bits (76), Expect = 0.40
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 623 EEEVQEEEEEEEEEEEEEEEE 643
+ + EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 32.6 bits (74), Expect = 0.65
Identities = 14/21 (66%), Positives = 17/21 (80%)
Query: 621 EEEEEVQEEEEEEEEEEEEEE 641
+ E +E+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
Score = 32.2 bits (73), Expect = 0.87
Identities = 14/21 (66%), Positives = 16/21 (76%)
Query: 622 EEEEVQEEEEEEEEEEEEEEE 642
+ EE+EEEEEEEEEEEE
Sbjct: 223 GSDSESEEDEEEEEEEEEEEE 243
>gnl|CDD|225638 COG3096, MukB, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 1480
Score = 37.6 bits (87), Expect = 0.024
Identities = 19/58 (32%), Positives = 31/58 (53%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ L++ R++E+ E + + EE EE+ E V+E E +EE E E E E +E
Sbjct: 337 LNLVQTALRQQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEARAEAAELEVDE 394
Score = 32.9 bits (75), Expect = 0.67
Identities = 20/71 (28%), Positives = 31/71 (43%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ D + N++Q R + + E + + EE EE+ E EE E +EE E
Sbjct: 324 GDLEADYQAASDHLNLVQTALRQQEKIERYQADLEELTIRLEEQNEVVEEANERQEENEA 383
Query: 636 EEEEEEEEEEE 646
E E E +E
Sbjct: 384 RAEAAELEVDE 394
>gnl|CDD|217148 pfam02620, DUF177, Uncharacterized ACR, COG1399.
Length = 118
Score = 35.0 bits (81), Expect = 0.024
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 12/80 (15%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE------------EEEEEEEEEEEEEEE 648
EEEE E+EE E+++EE E +E ++ E EEE E+ + E
Sbjct: 35 EEEEAEDEELEDDDEEILVEGDEIDLGELVEEELLLALPMKPLCSEDCKGELLCPVCGAN 94
Query: 649 EEEEVRGGGKEEISLHFYVL 668
EE +E+I F L
Sbjct: 95 LNEEPCDCEEEKIDPRFAAL 114
Score = 32.7 bits (75), Expect = 0.19
Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 19/82 (23%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEE-------EEE------------EEVQEE 629
+ +L E E E+EE E+++EE E +E EEE E+ + E
Sbjct: 26 VDFEELFVPEEEEAEDEELEDDDEEILVEGDEIDLGELVEEELLLALPMKPLCSEDCKGE 85
Query: 630 EEEEEEEEEEEEEEEEEEEEEE 651
EE + EEE+
Sbjct: 86 LLCPVCGANLNEEPCDCEEEKI 107
Score = 30.0 bits (68), Expect = 1.3
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ + EE EEEE E+EE E+++EE E +E
Sbjct: 25 DVDFEELFVPEEEEAEDEELEDDDEEILVEGDE 57
Score = 29.2 bits (66), Expect = 2.5
Identities = 14/34 (41%), Positives = 23/34 (67%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ + EE+ EEEE E+EE E+++EE E +E+
Sbjct: 25 DVDFEELFVPEEEEAEDEELEDDDEEILVEGDEI 58
Score = 28.1 bits (63), Expect = 6.2
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ + EE V EEEE E+EE E+++EE E +E
Sbjct: 25 DVDFEELFVPEEEEAEDEELEDDDEEILVEGDE 57
>gnl|CDD|224273 COG1354, scpA, Rec8/ScpA/Scc1-like protein (kleisin family)
[Replication, recombination, and repair].
Length = 248
Score = 36.9 bits (86), Expect = 0.024
Identities = 20/45 (44%), Positives = 26/45 (57%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+EEEE E+EE EE +E+ EE E +E E E EEE +V
Sbjct: 77 KEEEEAEDEELEEPRDELVARLEEYERYKEAAELLAELEEERRDV 121
Score = 35.4 bits (82), Expect = 0.061
Identities = 21/60 (35%), Positives = 32/60 (53%), Gaps = 5/60 (8%)
Query: 600 REEEEEEEEEEEEEEEE-----EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+EEEE E+EE EE +E EE E +E + E EEE + + + E + ++E R
Sbjct: 77 KEEEEAEDEELEEPRDELVARLEEYERYKEAAELLAELEEERRDVFSKIKPEIKIKKERR 136
Score = 29.6 bits (67), Expect = 5.0
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 7/64 (10%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE-------EEEEEEEEEEE 650
E E+EE EE +E EE E +E E E EEE + E + ++E
Sbjct: 79 EEEAEDEELEEPRDELVARLEEYERYKEAAELLAELEEERRDVFSKIKPEIKIKKERRPV 138
Query: 651 EEVR 654
EE+
Sbjct: 139 EEIS 142
>gnl|CDD|219905 pfam08564, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic protein
kinases. This domains corresponds to the C terminal
domain whose function is unclear. It is found C terminal
to the Hsp90 chaperone (Heat shocked protein 90) binding
domain pfam08565 and the N terminal kinase binding
domain of Cdc37 pfam03234.
Length = 89
Score = 34.2 bits (79), Expect = 0.027
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+ E E+E +E EEE EEE ++EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 34.2 bits (79), Expect = 0.032
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E ++E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 33.9 bits (78), Expect = 0.043
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ E E+E +E EEE EEE +EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 33.5 bits (77), Expect = 0.057
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 33.5 bits (77), Expect = 0.058
Identities = 16/32 (50%), Positives = 23/32 (71%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+ E E+E +E++EE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 33.1 bits (76), Expect = 0.074
Identities = 16/32 (50%), Positives = 22/32 (68%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+ E E+E +E EEE +EE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 32.3 bits (74), Expect = 0.12
Identities = 17/32 (53%), Positives = 22/32 (68%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ E E+E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 32.3 bits (74), Expect = 0.13
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ E E + +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 32.3 bits (74), Expect = 0.15
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+ E E+E +E EEE EEE E +E EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.9 bits (73), Expect = 0.16
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+++ E+E +E EEE EEE E+EE EEE
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.9 bits (73), Expect = 0.17
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
+ E E+E +E EEE EEE E+ + EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.9 bits (73), Expect = 0.17
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ E E+E +E EEE +E E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.9 bits (73), Expect = 0.18
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+ E E+E +E E + EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.6 bits (72), Expect = 0.25
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ E E+ +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.6 bits (72), Expect = 0.26
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+ E E+E +E EE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.6 bits (72), Expect = 0.27
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+ E E+E +E EEE EE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.6 bits (72), Expect = 0.29
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
+ E E+E +E EEE EEE E+E EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 31.2 bits (71), Expect = 0.38
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+ E E+E +E +E EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 30.8 bits (70), Expect = 0.48
Identities = 17/27 (62%), Positives = 21/27 (77%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEE 624
GE+E +E EEE EEE E+EE EEE+E
Sbjct: 63 GEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 30.8 bits (70), Expect = 0.49
Identities = 16/32 (50%), Positives = 21/32 (65%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ E +E +E EEE EEE E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 30.8 bits (70), Expect = 0.53
Identities = 15/32 (46%), Positives = 21/32 (65%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ E E+E +E EEE E + E+EE EEE+E
Sbjct: 58 NAKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 30.0 bits (68), Expect = 0.92
Identities = 16/27 (59%), Positives = 20/27 (74%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEE 625
E E+E +E EEE EEE E+EE EEE+
Sbjct: 62 EGEKEFKELEEEYNEEEAEKEEIEEED 88
Score = 29.6 bits (67), Expect = 1.2
Identities = 16/31 (51%), Positives = 20/31 (64%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
+ E E+E +E EEE EEE E+EE EE E
Sbjct: 59 AKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 28.9 bits (65), Expect = 2.0
Identities = 15/31 (48%), Positives = 21/31 (67%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
+ E E+E +E EEE EEE E+EE E ++E
Sbjct: 59 AKIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
Score = 28.5 bits (64), Expect = 2.8
Identities = 15/30 (50%), Positives = 20/30 (66%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEE 622
++ E +E EEE EEE E+EE EEE+E
Sbjct: 60 KIEGEKEFKELEEEYNEEEAEKEEIEEEDE 89
>gnl|CDD|149180 pfam07960, CBP4, CBP4. The CBP4 in S. cerevisiae is essential for
the expression and activity of ubiquinol-cytochrome c
reductase. This family appears to be fungal specific.
Length = 128
Score = 35.1 bits (81), Expect = 0.029
Identities = 16/46 (34%), Positives = 24/46 (52%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E++ E ++ + EE Q+EE E EE EE + EE +E
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 33.9 bits (78), Expect = 0.068
Identities = 20/70 (28%), Positives = 32/70 (45%), Gaps = 17/70 (24%)
Query: 574 VWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
+WKT I SP E++ E ++ + EE ++EE E ++EE EE
Sbjct: 76 IWKTG---PIESPW--------------EKKRNVREFQKTKAEEAQKEELERIREELEEA 118
Query: 634 EEEEEEEEEE 643
+ EE +E
Sbjct: 119 RAQSEEMRKE 128
Score = 33.2 bits (76), Expect = 0.12
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
G E E++ E ++ + EE ++EE++ EE EE + EE +E
Sbjct: 80 GPIESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 32.4 bits (74), Expect = 0.28
Identities = 15/46 (32%), Positives = 23/46 (50%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E++ E ++ + EE +EE E EE EE + EE +E
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 31.6 bits (72), Expect = 0.50
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E++ E ++ + E ++EE E EE EE + EE +E
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
Score = 30.1 bits (68), Expect = 1.5
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E++ E ++ + EE ++EE E EE EE + EE+R
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMR 126
Score = 29.7 bits (67), Expect = 1.9
Identities = 14/46 (30%), Positives = 23/46 (50%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E E++ E ++ + EE ++E E EE EE + EE +E
Sbjct: 83 ESPWEKKRNVREFQKTKAEEAQKEELERIREELEEARAQSEEMRKE 128
>gnl|CDD|220290 pfam09557, DUF2382, Domain of unknown function (DUF2382). This
entry describes an uncharacterized domain, sometimes
found in association with a PRC-barrel domain pfam05239
which is also found in rRNA processing protein RimM and
in a photosynthetic reaction centre complex protein).
This domain is found in proteins from Bacillus subtilis,
Deinococcus radiodurans, Nostoc sp. PCC 7120, Myxococcus
xanthus, and several other species. The function is not
known.
Length = 113
Score = 34.9 bits (81), Expect = 0.029
Identities = 18/63 (28%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ EEE EE V +E EE +E E+ E EE VR +
Sbjct: 52 PGAAAAPGGRDFEEETIRIPLSEERVVVSKEAVVVEEVRVGKETVEDTETVEETVR---R 108
Query: 659 EEI 661
EE+
Sbjct: 109 EEL 111
Score = 28.7 bits (65), Expect = 4.3
Identities = 16/78 (20%), Positives = 23/78 (29%), Gaps = 8/78 (10%)
Query: 595 IRRGE---REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ GE R+ E E EE E V + + EEE E
Sbjct: 15 VQTGEVRVRKHVVTETVTVEVPVRREEVVVERRPVTDPGAAAAPGGRDFEEETIRIPLSE 74
Query: 652 EV-----RGGGKEEISLH 664
E EE+ +
Sbjct: 75 ERVVVSKEAVVVEEVRVG 92
Score = 28.3 bits (64), Expect = 5.4
Identities = 16/60 (26%), Positives = 20/60 (33%), Gaps = 8/60 (13%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEE--------EEVQEEEEEEEEEEEEEEEEEEEE 647
G + EEE EE EEV+ +E E+ E EE EE
Sbjct: 51 DPGAAAAPGGRDFEEETIRIPLSEERVVVSKEAVVVEEVRVGKETVEDTETVEETVRREE 110
>gnl|CDD|240285 PTZ00135, PTZ00135, 60S acidic ribosomal protein P0; Provisional.
Length = 310
Score = 36.9 bits (86), Expect = 0.029
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 633 EEEEEEEEEEEEEEEEEEEEVRGGG 657
EEEEEEE+ G G
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDDMGFG 307
Score = 33.5 bits (77), Expect = 0.36
Identities = 8/25 (32%), Positives = 11/25 (44%)
Query: 632 EEEEEEEEEEEEEEEEEEEEEVRGG 656
EEEEEEE+++ G
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDDMGFG 307
Score = 32.7 bits (75), Expect = 0.65
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 606 EEEEEEEEEEEEEEEEEEEEV 626
EEEEEEE+
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 0.88
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 601 EEEEEEEEEEEEEEEEEEEEE 621
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 0.88
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 602 EEEEEEEEEEEEEEEEEEEEE 622
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 0.88
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 603 EEEEEEEEEEEEEEEEEEEEE 623
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 0.88
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 604 EEEEEEEEEEEEEEEEEEEEE 624
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 0.88
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 605 EEEEEEEEEEEEEEEEEEEEE 625
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 0.88
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 628 EEEEEEEEEEEEEEEEEEEEE 648
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 0.88
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 629 EEEEEEEEEEEEEEEEEEEEE 649
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 0.88
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 630 EEEEEEEEEEEEEEEEEEEEE 650
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 0.88
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 631 EEEEEEEEEEEEEEEEEEEEE 651
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.9 bits (73), Expect = 1.1
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 620 EEEEEEVQEEEEEEEEEEEEE 640
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.5 bits (72), Expect = 1.2
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 623 EEEVQEEEEEEEEEEEEEEEE 643
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.5 bits (72), Expect = 1.4
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 618 EEEEEEEEVQEEEEEEEEEEE 638
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.1 bits (71), Expect = 1.6
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 626 VQEEEEEEEEEEEEEEEEEEE 646
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 31.1 bits (71), Expect = 1.9
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 619 EEEEEEEVQEEEEEEEEEEEE 639
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.4 bits (69), Expect = 3.0
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 617 EEEEEEEEEVQEEEEEEEEEE 637
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.4 bits (69), Expect = 3.2
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 625 EVQEEEEEEEEEEEEEEEEEE 645
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 3.6
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 624 EEVQEEEEEEEEEEEEEEEEE 644
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 30.0 bits (68), Expect = 3.7
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 599 EREEEEEEEEEEEEEEEEEE 618
EEEEEEE++
Sbjct: 284 AAAAAAAAAPAEEEEEEEDD 303
Score = 29.6 bits (67), Expect = 5.2
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 621 EEEEEVQEEEEEEEEEEEEEE 641
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 29.6 bits (67), Expect = 5.8
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 616 EEEEEEEEEEVQEEEEEEEEE 636
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
Score = 29.2 bits (66), Expect = 6.9
Identities = 7/21 (33%), Positives = 9/21 (42%)
Query: 622 EEEEVQEEEEEEEEEEEEEEE 642
EEEEEEE++
Sbjct: 283 AAAAAAAAAAPAEEEEEEEDD 303
>gnl|CDD|224511 COG1595, RpoE, DNA-directed RNA polymerase specialized sigma
subunit, sigma24 homolog [Transcription].
Length = 182
Score = 35.8 bits (83), Expect = 0.029
Identities = 16/73 (21%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Query: 572 IKVWKTSDQ-DEIGSPR------IEN-IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE 623
++ W+ D S + N I +R+ +R EE + EE + + E
Sbjct: 51 LRAWRAIDSFRGRSSFKAWLYRIARNLAIDRLRKRKRRRARVEEADLLPEEADPAPDLAE 110
Query: 624 EEVQEEEEEEEEE 636
+ EEE E
Sbjct: 111 LLLAEEELERLRR 123
>gnl|CDD|206034 pfam13863, DUF4200, Domain of unknown function (DUF4200). This
family is found in eukaryotes. It is a coiled-coil
domain of unknwon function.
Length = 126
Score = 34.9 bits (81), Expect = 0.029
Identities = 19/66 (28%), Positives = 39/66 (59%), Gaps = 1/66 (1%)
Query: 588 IENIIQLIRRGEREEEEEEEE-EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++ + R E ++ EEE E++EEE +E + ++ ++E E + E++ EEE++
Sbjct: 16 LDAKREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKL 75
Query: 647 EEEEEE 652
+E+EE
Sbjct: 76 RKEKEE 81
Score = 31.4 bits (72), Expect = 0.53
Identities = 20/44 (45%), Positives = 32/44 (72%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
RR E++ EEE++ +E+EEE +E + E EE++ E E+ EE+ EE
Sbjct: 63 RRAEKKAEEEKKLRKEKEEEIKELKAELEELKAEIEKLEEKLEE 106
Score = 31.4 bits (72), Expect = 0.57
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + ++ E + E++ EEE++ +E+EEE +E++ E EE + E E+ EE+ EE
Sbjct: 47 SLIKFDKFLKENEAKRRRAEKKAEEEKKLRKEKEEEIKELKAELEELKAEIEKLEEKLEE 106
Score = 31.0 bits (71), Expect = 0.78
Identities = 21/62 (33%), Positives = 35/62 (56%), Gaps = 10/62 (16%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEV----------QEEEEEEEEEEEEEEEEEEEEE 648
ER EE ++ EEE E++EEE +E + + E++ EEE++ +E+EEE
Sbjct: 24 ERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLRKEKEEEI 83
Query: 649 EE 650
+E
Sbjct: 84 KE 85
Score = 29.9 bits (68), Expect = 2.0
Identities = 22/63 (34%), Positives = 37/63 (58%), Gaps = 7/63 (11%)
Query: 599 EREEEEEEEEEEEEEEEE-------EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+REEE E++EEE +E E E + ++ EEE++ +E+EEE +E + E E
Sbjct: 32 QREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLRKEKEEEIKELKAELE 91
Query: 652 EVR 654
E++
Sbjct: 92 ELK 94
Score = 29.1 bits (66), Expect = 2.8
Identities = 19/48 (39%), Positives = 32/48 (66%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E + E++ EEE++ +E+EEE++E + E EE + E E+ EE+ EE
Sbjct: 59 EAKRRRAEKKAEEEKKLRKEKEEEIKELKAELEELKAEIEKLEEKLEE 106
Score = 28.0 bits (63), Expect = 7.5
Identities = 17/47 (36%), Positives = 28/47 (59%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+ E EE + + + EE E +EE ++ EEE E++EEE +E +
Sbjct: 4 EKRREMEEVQLALDAKREEFERREELLKQREEELEKKEEELQESLIK 50
Score = 28.0 bits (63), Expect = 8.5
Identities = 24/74 (32%), Positives = 38/74 (51%), Gaps = 19/74 (25%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ-------------------EEEEEEEEE 636
+R E E EE ++ EEE E++EEE +E ++ EEE++ +E
Sbjct: 19 KREEFERREELLKQREEELEKKEEELQESLIKFDKFLKENEAKRRRAEKKAEEEKKLRKE 78
Query: 637 EEEEEEEEEEEEEE 650
+EEE +E + E EE
Sbjct: 79 KEEEIKELKAELEE 92
Score = 27.6 bits (62), Expect = 9.8
Identities = 16/46 (34%), Positives = 26/46 (56%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+ E EE + + + EE + EE ++ EEE E++EEE +E
Sbjct: 4 EKRREMEEVQLALDAKREEFERREELLKQREEELEKKEEELQESLI 49
>gnl|CDD|227447 COG5117, NOC3, Protein involved in the nuclear export of
pre-ribosomes [Translation, ribosomal structure and
biogenesis / Intracellular trafficking and secretion].
Length = 657
Score = 37.3 bits (86), Expect = 0.029
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE E E E E + + ++E Q+ EE++ E +++ + E+E
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
Score = 35.8 bits (82), Expect = 0.088
Identities = 12/47 (25%), Positives = 25/47 (53%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE E E E E + + ++E+ + EE++ E +++ + E+E
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
Score = 35.4 bits (81), Expect = 0.097
Identities = 10/42 (23%), Positives = 23/42 (54%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE E E E E+ + ++E+++ EE++ E ++++
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQI 133
Score = 35.0 bits (80), Expect = 0.15
Identities = 12/56 (21%), Positives = 27/56 (48%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++ EE E E E E + + ++E++ EE++ E +++ + E+E
Sbjct: 83 NVVADVNNGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
Score = 34.6 bits (79), Expect = 0.17
Identities = 11/54 (20%), Positives = 26/54 (48%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ EE E E E E + + + ++++ EE++ E +++ + E+E
Sbjct: 85 VADVNNGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
Score = 34.2 bits (78), Expect = 0.22
Identities = 11/56 (19%), Positives = 29/56 (51%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
N++ + GE E E E E + + ++E+++ +++ E +++ + E+E
Sbjct: 83 NVVADVNNGEEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKE 138
Score = 34.2 bits (78), Expect = 0.24
Identities = 11/49 (22%), Positives = 26/49 (53%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE E E E E + + ++ +++ EE++ E +++ + E+E +
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERI 140
Score = 34.2 bits (78), Expect = 0.27
Identities = 16/86 (18%), Positives = 36/86 (41%), Gaps = 8/86 (9%)
Query: 575 WKTSDQDEIGSPRIE--------NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEV 626
+QD PR+ N + + + + EE E E E E + ++
Sbjct: 51 SDEEEQDYELRPRVSSSWNNESYNRLPIKTKDNVVADVNNGEEFLSESESEASLEIDSDI 110
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEE 652
++E+++ EE++ E +++ + E
Sbjct: 111 KDEKQKSLEEQKIAPEIPVKQQIDSE 136
Score = 33.5 bits (76), Expect = 0.49
Identities = 12/50 (24%), Positives = 24/50 (48%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
EE E E E + + ++E+++ EE++ E ++ KE I+
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKERIA 141
Score = 33.1 bits (75), Expect = 0.57
Identities = 12/48 (25%), Positives = 24/48 (50%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE E E E E + + E+++ EE++ E +++ + E+ R
Sbjct: 92 EEFLSESESEASLEIDSDIKDEKQKSLEEQKIAPEIPVKQQIDSEKER 139
>gnl|CDD|219882 pfam08524, rRNA_processing, rRNA processing. This is a family of
proteins that are involved in rRNA processing. In a
localisation study they were found to localise to the
nucleus and nucleolus. The family also includes other
metazoa members from plants to mammals where the protein
has been named BR22 and is associated with TTF-1,
thyroid transcription factor 1. In the lungs, the family
binds TTF-1 to form a complex which influences the
expression of the key lung surfactant protein-B (SP-B)
and -C (SP-C), the small hydrophobic surfactant proteins
that maintain surface tension in alveoli.
Length = 150
Score = 35.6 bits (82), Expect = 0.030
Identities = 13/49 (26%), Positives = 34/49 (69%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
R+ E++++ +E++E ++ + E+ E+E + Q+E E+ E +++++E E
Sbjct: 66 RKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKKQKERE 114
Score = 30.6 bits (69), Expect = 1.4
Identities = 14/65 (21%), Positives = 39/65 (60%), Gaps = 2/65 (3%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE--EEEEEEVRG 655
G E+E E++ + +E+ + E+++++ E++E ++ + E+ E+E ++E E++
Sbjct: 46 GYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIEL 105
Query: 656 GGKEE 660
K++
Sbjct: 106 SKKKQ 110
Score = 29.5 bits (66), Expect = 2.8
Identities = 15/67 (22%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 598 GEREEEEEEEEEEEE----------EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E+E E++ + +E +E++E ++ + E +E+E + ++E E+ E +++
Sbjct: 50 PEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSKKK 109
Query: 648 EEEEEVR 654
++E E R
Sbjct: 110 QKERERR 116
Score = 29.5 bits (66), Expect = 3.5
Identities = 12/67 (17%), Positives = 32/67 (47%)
Query: 568 IRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ 627
P + + + + E +L + E ++ + E+ E+E + ++E E+ E +
Sbjct: 48 AVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEKIELSK 107
Query: 628 EEEEEEE 634
++++E E
Sbjct: 108 KKQKERE 114
Score = 28.3 bits (63), Expect = 8.6
Identities = 15/63 (23%), Positives = 37/63 (58%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E+E E+E E++ + +E+ + +++++ +E++E ++ + E+ E+E R E+
Sbjct: 43 EKEGYAVPEKESAEKQVKSSKEDRKFEKKKKLDEKKEIAKQRKREQREKELAKRQKELEK 102
Query: 661 ISL 663
I L
Sbjct: 103 IEL 105
>gnl|CDD|226907 COG4530, COG4530, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 129
Score = 35.2 bits (81), Expect = 0.031
Identities = 16/80 (20%), Positives = 39/80 (48%), Gaps = 14/80 (17%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ-----------EEEEEEEEEEEEE--- 640
E EEEE +E + E EE E E+ + ++E+ + ++++++
Sbjct: 47 DAAAEEEEEEVVKEVDAENEEVEVVSLEDADDDPKGGDDLPDLGDDEDVDLDDDDDDTFL 106
Query: 641 EEEEEEEEEEEEVRGGGKEE 660
E+EE+++++ + G ++
Sbjct: 107 EDEEDDDDDVSGIIGVPGDD 126
Score = 34.1 bits (78), Expect = 0.068
Identities = 16/47 (34%), Positives = 23/47 (48%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
G+ EE + EEEEEE +EV E EE E E+ +++
Sbjct: 33 GKSYPRSYFEETTPDAAAEEEEEEVVKEVDAENEEVEVVSLEDADDD 79
Score = 30.6 bits (69), Expect = 0.95
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
EE + EE +EE +E + E EE E E+ +++ +GG
Sbjct: 42 EETTPDAAAEEEEEEVVKEVDAENEEVEVVSLEDADDDPKGG 83
Score = 30.2 bits (68), Expect = 1.3
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
EE + EEEEEE V+E + E EE E E+ +++
Sbjct: 42 EETTPDAAAEEEEEEVVKEVDAENEEVEVVSLEDADDD 79
Score = 29.8 bits (67), Expect = 1.9
Identities = 15/38 (39%), Positives = 22/38 (57%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EE + EEEEEEV +E + E EE E E+ +++
Sbjct: 42 EETTPDAAAEEEEEEVVKEVDAENEEVEVVSLEDADDD 79
>gnl|CDD|218010 pfam04293, SpoVR, SpoVR like protein. Bacillus subtilis stage V
sporulation protein R is involved in spore cortex
formation. Little is known about cortex biosynthesis,
except that it depends on several sigma E controlled
genes, including spoVR.
Length = 427
Score = 36.8 bits (86), Expect = 0.031
Identities = 15/56 (26%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEE-EEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
R + EEE+ +EE EE + + + + + E+ EEE + EE +E
Sbjct: 170 KRPIKLSLEEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKRFPEEPQE 225
Score = 32.6 bits (75), Expect = 0.77
Identities = 12/41 (29%), Positives = 19/41 (46%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EEE+ +EE EE + + + + E+ EEE R
Sbjct: 178 EEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARRKR 218
Score = 31.0 bits (71), Expect = 2.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EEE+ +EE EE +Q + + + E+ EEE
Sbjct: 178 EEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARR 216
Score = 29.1 bits (66), Expect = 8.9
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EEE+ +EE EE + + + E+ EEE
Sbjct: 178 EEEKARQEEREEYLQSQVNDLWRTIPPQREKLEEERARR 216
>gnl|CDD|223405 COG0328, RnhA, Ribonuclease HI [DNA replication, recombination, and
repair].
Length = 154
Score = 35.4 bits (82), Expect = 0.032
Identities = 20/95 (21%), Positives = 35/95 (36%), Gaps = 12/95 (12%)
Query: 366 AELIAIFLCLEAILDSPSGKFLIVTDSRSSLAALSNVRFINPLI-------TKVYSTWSY 418
AEL A+ LEA+ + + + + TDS+ + ++ V + +
Sbjct: 46 AELRALIEALEALKELGACEVTLYTDSKYVVEGITRWIVKWKKNGWKTADKKPVKNKDLW 105
Query: 419 ---LKLCKKDITFM--WCPSHCGIKGNEIVDVAAK 448
+L K+ W H G NE D A+
Sbjct: 106 EELDELLKRHELVFWEWVKGHAGHPENERADQLAR 140
Score = 29.6 bits (67), Expect = 2.8
Identities = 10/42 (23%), Positives = 16/42 (38%), Gaps = 2/42 (4%)
Query: 484 VPNTNKLKTIRPSIKKDITFM--WCPSHCGIKGNELVDVAAK 523
V N + + + +K+ W H G NE D A+
Sbjct: 99 VKNKDLWEELDELLKRHELVFWEWVKGHAGHPENERADQLAR 140
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit.
Transcription initiation factor IIA (TFIIA) is a
heterotrimer, the three subunits being known as alpha,
beta, and gamma, in order of molecular weight. The N and
C-terminal domains of the gamma subunit are represented
in pfam02268 and pfam02751, respectively. This family
represents the precursor that yields both the alpha and
beta subunits. The TFIIA heterotrimer is an essential
general transcription initiation factor for the
expression of genes transcribed by RNA polymerase II.
Together with TFIID, TFIIA binds to the promoter region;
this is the first step in the formation of a
pre-initiation complex (PIC). Binding of the rest of the
transcription machinery follows this step. After
initiation, the PIC does not completely dissociate from
the promoter. Some components, including TFIIA, remain
attached and re-initiate a subsequent round of
transcription.
Length = 332
Score = 36.6 bits (85), Expect = 0.032
Identities = 5/39 (12%), Positives = 25/39 (64%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
++E + +++++E+ E ++ + +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.9 bits (83), Expect = 0.059
Identities = 5/40 (12%), Positives = 23/40 (57%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+ E + +++++E+ E + ++ +++ E+ E+ + +
Sbjct: 249 SDDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.5 bits (82), Expect = 0.080
Identities = 6/38 (15%), Positives = 25/38 (65%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+E + +++++E+ E + ++ +++V +E+ E+ + +
Sbjct: 251 DEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 35.1 bits (81), Expect = 0.096
Identities = 5/39 (12%), Positives = 23/39 (58%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
++E + +++++E+ E + +++ +E+ E+ + +
Sbjct: 250 DDEGDGSDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTD 288
Score = 34.7 bits (80), Expect = 0.15
Identities = 11/95 (11%), Positives = 41/95 (43%), Gaps = 5/95 (5%)
Query: 559 VPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEE 618
V T+ IK + G+ ++ + + + + + + ++E +
Sbjct: 201 VRLREADGTLEQRIK-----GAEGGGAMKVLKQPKKQAKSSKRRTIAQIDGIDSDDEGDG 255
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+++++E E + ++ +++ +E+ E+ + + V
Sbjct: 256 SDDDDDEDAIESDLDDSDDDVSDEDGEDLFDTDNV 290
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 36.9 bits (86), Expect = 0.033
Identities = 18/40 (45%), Positives = 25/40 (62%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E+ EE EE E E+E+ EEE+EEEE+E E ++ G
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQG 40
Score = 36.1 bits (84), Expect = 0.057
Identities = 18/40 (45%), Positives = 26/40 (65%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E+ EEE++E E E+E+ EEE+EEEE+E E +G
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLKQG 40
Score = 34.5 bits (80), Expect = 0.15
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E+ EEE EE E E ++ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 34.5 bits (80), Expect = 0.18
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E+ EEE EE++ E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 33.8 bits (78), Expect = 0.26
Identities = 17/36 (47%), Positives = 21/36 (58%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
E+ EEE EE E E+E+ EE EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 33.8 bits (78), Expect = 0.26
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E+ EEE EE E E+E+ E ++EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 33.8 bits (78), Expect = 0.31
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E+ EEE EE E E+E+ EEE +EEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 33.4 bits (77), Expect = 0.34
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E+ EEE EE E E+E+++EE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 33.4 bits (77), Expect = 0.39
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E+ EEE EE E E+E+ +E+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 33.0 bits (76), Expect = 0.47
Identities = 18/36 (50%), Positives = 22/36 (61%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E+ EEE EE E E+E EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 33.0 bits (76), Expect = 0.51
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E+ EEE EE E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 32.6 bits (75), Expect = 0.59
Identities = 17/36 (47%), Positives = 23/36 (63%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E+ EEE EE E ++E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 32.6 bits (75), Expect = 0.66
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E+ EEE + E E+E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 32.2 bits (74), Expect = 0.73
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E+ EEE EE E +E+ EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 32.2 bits (74), Expect = 0.83
Identities = 16/34 (47%), Positives = 22/34 (64%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
E+ EEE EE E E+E+ EEE+EE ++E E
Sbjct: 3 FFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 32.2 bits (74), Expect = 0.84
Identities = 17/35 (48%), Positives = 23/35 (65%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E+ EEE EE E E+E+ EEE+EEE + G E +
Sbjct: 4 FEKLEEELEELEAEKEKIEEEDEEEEKEGWFERLK 38
Score = 32.2 bits (74), Expect = 0.85
Identities = 16/36 (44%), Positives = 22/36 (61%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
E+ EEE EE E E+E+ EEE+ +EE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 32.2 bits (74), Expect = 0.90
Identities = 17/36 (47%), Positives = 22/36 (61%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E+ EEE EE E E+ + EEE+EEEE+E E
Sbjct: 1 MGFFEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
Score = 29.9 bits (68), Expect = 5.0
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
+ EEE EE E E+E+ EEE+EEEE+ E
Sbjct: 4 FEKLEEELEELEAEKEKIEEEDEEEEKEGWFER 36
>gnl|CDD|227084 COG4741, COG4741, Predicted secreted endonuclease distantly related
to archaeal Holliday junction resolvase [Nucleotide
transport and metabolism].
Length = 175
Score = 35.5 bits (82), Expect = 0.035
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++ L+R R + + E + E EE ++ E E V E + +EEE + +E E++ EE
Sbjct: 16 VLYLLRAYIRSLQGKVESKARELEETLQKAERERLVNEAQARKEEEWKLKEWIEKKIEEA 75
Query: 651 EE 652
E
Sbjct: 76 RE 77
Score = 34.0 bits (78), Expect = 0.12
Identities = 16/55 (29%), Positives = 28/55 (50%), Gaps = 4/55 (7%)
Query: 592 IQLIRR----GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
I+ ++ RE EE ++ E E E + +EEE + +E E++ EE E+
Sbjct: 24 IRSLQGKVESKARELEETLQKAERERLVNEAQARKEEEWKLKEWIEKKIEEARED 78
>gnl|CDD|218681 pfam05667, DUF812, Protein of unknown function (DUF812). This
family consists of several eukaryotic proteins of
unknown function.
Length = 536
Score = 36.7 bits (85), Expect = 0.037
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 8/64 (12%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE--------EEEEEEEEEEEEEEE 650
+ EE+ +E E E E +E+ +E E ++E E + EE +E EE E
Sbjct: 259 DTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVRQENEELE 318
Query: 651 EEVR 654
EE +
Sbjct: 319 EEYK 322
Score = 36.3 bits (84), Expect = 0.054
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E+ ++ + E E E +E+ +E E EE E + + + ++ EE
Sbjct: 252 EVPPAEMDTEEDRTKEREAELEALQEQIDELESSIEEVLSEIKALASKIKQVNEELTTVR 311
Query: 642 EEEEEEEEE 650
+E EE EEE
Sbjct: 312 QENEELEEE 320
>gnl|CDD|216860 pfam02063, MARCKS, MARCKS family.
Length = 296
Score = 36.3 bits (83), Expect = 0.037
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E EE + E E+ E + EE E+ + EE + EE++ EE+ EE
Sbjct: 206 EGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEE 254
Score = 36.3 bits (83), Expect = 0.039
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E EE + E E+ E + EE E+ + EE + EE++ EE+ EE
Sbjct: 206 EGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEE 254
Score = 35.2 bits (80), Expect = 0.10
Identities = 18/48 (37%), Positives = 26/48 (54%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
GE EE + E E+ E + EE E+ EE + EE++ EE+ EE
Sbjct: 207 GEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEE 254
Score = 34.4 bits (78), Expect = 0.14
Identities = 16/45 (35%), Positives = 25/45 (55%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E EE + E E+ E + EE E+ + EE + EE++ EE+
Sbjct: 206 EGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEK 250
Score = 34.4 bits (78), Expect = 0.15
Identities = 17/52 (32%), Positives = 27/52 (51%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E E EE + E E+ E + EE ++ + EE + EE++ EE+ EE
Sbjct: 203 AGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEE 254
Score = 34.0 bits (77), Expect = 0.19
Identities = 19/60 (31%), Positives = 27/60 (45%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
GE E E EE + E E+ E EE E+ + EE + EE++ EE+ G
Sbjct: 197 GEEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEEAG 256
Score = 33.3 bits (75), Expect = 0.36
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
EE + E E+ E + EE E+ + +E + EE++ EE+ EE
Sbjct: 207 GEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEE 254
Score = 31.0 bits (69), Expect = 1.9
Identities = 18/57 (31%), Positives = 25/57 (43%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE E E EE + E Q E + EE E+ + EE + EE++ EE
Sbjct: 198 EEAGAAGAEGEAGEEPAADAEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEE 254
Score = 29.4 bits (65), Expect = 6.4
Identities = 17/54 (31%), Positives = 26/54 (48%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E+ E + EE E+ + EE + EE + EE+ EE +E E+E
Sbjct: 217 AEPEQPEAKPEEAAPEKPQAEEAKAAEEQKAEEKPAEEAGASSAAQEAPAAEQE 270
>gnl|CDD|218744 pfam05781, MRVI1, MRVI1 protein. This family consists of mammalian
MRVI1 proteins which are related to the
lymphoid-restricted membrane protein (JAW1) and the IP3
receptor associated cGMP kinase substrates A and B
(IRAGA and IRAGB). The function of MRVI1 is unknown
although mutations in the Mrvi1 gene induces myeloid
leukaemia by altering the expression of a gene important
for myeloid cell growth and/or differentiation so it has
been speculated that Mrvi1 is a tumour suppressor gene.
IRAG is very similar in sequence to MRVI1 and is an
essential NO/cGKI-dependent regulator of IP3-induced
calcium release. Activation of cGKI decreases
IP3-stimulated elevations in intracellular calcium,
induces smooth muscle relaxation and contributes to the
antiproliferative and pro-apoptotic effects of NO/cGMP.
Jaw1 is a member of a class of proteins with
COOH-terminal hydrophobic membrane anchors and is
structurally similar to proteins involved in vesicle
targeting and fusion. This suggests that the function
and/or the structure of the ER in lymphocytes may be
modified by lymphoid-restricted resident ER proteins.
Length = 538
Score = 36.9 bits (85), Expect = 0.038
Identities = 14/43 (32%), Positives = 25/43 (58%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EEE++ ++ ++ E E EE V+ + EE E EE ++E+
Sbjct: 415 EEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQ 457
Score = 36.5 bits (84), Expect = 0.048
Identities = 19/74 (25%), Positives = 37/74 (50%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
++S +G+ + E+ L+R + EEE++ ++ ++ E E EE E +
Sbjct: 384 RSSSWRILGAKQSEHRPSLLRFISTYSWADAEEEKKTKKLQDLREPEGEEAVERTRKPSL 443
Query: 636 EEEEEEEEEEEEEE 649
EE E EE ++E+
Sbjct: 444 SEEVAETEEWDKEQ 457
Score = 34.2 bits (78), Expect = 0.21
Identities = 16/59 (27%), Positives = 25/59 (42%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYVLY 669
EEE++ ++ ++ E EE E + EE E EE ++E R V Y
Sbjct: 415 EEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQRSSKLASWVTFLQVSY 473
Score = 33.5 bits (76), Expect = 0.38
Identities = 14/54 (25%), Positives = 25/54 (46%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
R + EEE++ ++ ++ E E E E + EE E EE ++E+
Sbjct: 404 RFISTYSWADAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQ 457
Score = 33.5 bits (76), Expect = 0.39
Identities = 15/54 (27%), Positives = 26/54 (48%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EEE++ ++ ++ E E EE E + EE E EE ++E+ + V
Sbjct: 413 DAEEEKKTKKLQDLREPEGEEAVERTRKPSLSEEVAETEEWDKEQRSSKLASWV 466
>gnl|CDD|149439 pfam08375, Rpn3_C, Proteasome regulatory subunit C-terminal. This
eukaryotic domain is found at the C-terminus of 26S
proteasome regulatory subunits such as the non-ATPase
Rpn3 subunit which is essential for proteasomal
function. It occurs together with the PCI/PINT domain
(pfam01399).
Length = 68
Score = 33.5 bits (77), Expect = 0.038
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
R ++E++EEE+ EE E ++ E E+ +E E + ++
Sbjct: 31 RYPPDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 30.8 bits (70), Expect = 0.29
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++E++EEE EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 30.8 bits (70), Expect = 0.30
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
++E++EEE+ EE E + E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 30.8 bits (70), Expect = 0.33
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++E++EEE+ +E E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 30.4 bits (69), Expect = 0.41
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++E++EE + EE E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 29.6 bits (67), Expect = 0.77
Identities = 11/35 (31%), Positives = 23/35 (65%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
++E++EEE+ EE +E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 29.6 bits (67), Expect = 0.79
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
++E++EEE+ EE E Q E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.8 bits (65), Expect = 1.4
Identities = 9/35 (25%), Positives = 21/35 (60%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
++E++EEE+ + E ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.8
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
++E++EEE+ EE E ++ E++ +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.4 bits (64), Expect = 1.9
Identities = 10/35 (28%), Positives = 23/35 (65%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
++E++EEE+ EE E ++++ E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.1 bits (63), Expect = 2.8
Identities = 10/35 (28%), Positives = 21/35 (60%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
++E++EEE+ EE E ++ E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 28.1 bits (63), Expect = 3.0
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEE 625
E++EEE+ EE E ++ E E +E E
Sbjct: 37 EKKEEEKAEEARERDQLELELAKELSE 63
Score = 27.7 bits (62), Expect = 3.2
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
++E++EEE+ EE E + E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
Score = 27.7 bits (62), Expect = 3.9
Identities = 10/35 (28%), Positives = 22/35 (62%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++E++EEE+ EE + ++ E E +E E + ++
Sbjct: 34 PDKEKKEEEKAEEARERDQLELELAKELSEGDLDD 68
>gnl|CDD|114629 pfam05917, DUF874, Helicobacter pylori protein of unknown function
(DUF874). This family consists of several hypothetical
proteins specific to Helicobacter pylori. The function
of this family is unknown.
Length = 417
Score = 36.8 bits (84), Expect = 0.040
Identities = 18/62 (29%), Positives = 40/62 (64%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E E+EE++ E+E+++ E+E E + + E+E+++ E+E+++ E+E+++ K I
Sbjct: 150 ELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAI 209
Query: 662 SL 663
L
Sbjct: 210 EL 211
Score = 35.6 bits (81), Expect = 0.080
Identities = 16/50 (32%), Positives = 37/50 (74%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E+EE++ E+E+++ E+E E Q + E+E+++ E+E+++ E+E+++
Sbjct: 150 ELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQK 199
Score = 35.6 bits (81), Expect = 0.084
Identities = 16/56 (28%), Positives = 39/56 (69%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R + E E+EE++ E+E+++ E+E E+ + + E+E+++ E+E+++ E+E++
Sbjct: 143 RANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQ 198
Score = 35.6 bits (81), Expect = 0.088
Identities = 15/50 (30%), Positives = 38/50 (76%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E E+EE++ E+E+++ E+E E +++ E+E+++ E+E+++ E+E+++
Sbjct: 150 ELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQK 199
Score = 33.3 bits (75), Expect = 0.43
Identities = 13/53 (24%), Positives = 36/53 (67%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+EE++ E+E+++ E+E E + + ++E+++ E+E+++ E+E+++
Sbjct: 152 EQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIA 204
Score = 32.9 bits (74), Expect = 0.52
Identities = 20/81 (24%), Positives = 47/81 (58%), Gaps = 12/81 (14%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE--------- 642
I+L + ++ E+E+++ E+E E + + E+E Q+ E+E+++ E+E+++
Sbjct: 149 IELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNA 208
Query: 643 ---EEEEEEEEEEVRGGGKEE 660
E+E+++ E E + KE+
Sbjct: 209 IELEQEKQKTENEKQDLIKEQ 229
Score = 31.8 bits (71), Expect = 1.2
Identities = 20/112 (17%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 557 DNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENII---QLIRRGEREEEEEEEE----- 608
D + + +K I +K++ + + ++ E + ++E E
Sbjct: 84 DKLQDKSKQAEHENQINWFKSAIGLTAAAALLLAACFADDQDKKIELAQAKKEAENARDR 143
Query: 609 --------EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+EE++ E+E+++ E+E E + + E+E+++ E+E+++ E+
Sbjct: 144 ANKSGIELEQEEQKTEQEKQKTEKEGIELANSQIKAEQEKQKTEQEKQKTEQ 195
Score = 30.6 bits (68), Expect = 2.5
Identities = 12/54 (22%), Positives = 37/54 (68%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ E+E+++ E+E+++ E+E+++ + E E+E+++ E E+++ +E+++
Sbjct: 178 KAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQKD 231
Score = 30.3 bits (67), Expect = 4.3
Identities = 12/52 (23%), Positives = 36/52 (69%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+E+++ E+E+++ E+E+++ + E E+E+++ E E+++ +E+++
Sbjct: 180 EQEKQKTEQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQKD 231
Score = 29.9 bits (66), Expect = 4.4
Identities = 14/61 (22%), Positives = 39/61 (63%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
I+L + E+E+++ E+E+++ E+E+++ + E E+E+++ E E+++ +E+
Sbjct: 170 IELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQ 229
Query: 652 E 652
+
Sbjct: 230 K 230
Score = 29.1 bits (64), Expect = 7.9
Identities = 14/64 (21%), Positives = 37/64 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E + + E+E+++ E+E+++ E+E+ + + E E+E+++ E E++++ K
Sbjct: 171 ELANSQIKAEQEKQKTEQEKQKTEQEKQKTSNIANKNAIELEQEKQKTENEKQDLIKEQK 230
Query: 659 EEIS 662
+ I
Sbjct: 231 DFIK 234
>gnl|CDD|234141 TIGR03185, DNA_S_dndD, DNA sulfur modification protein DndD. This
model describes the DndB protein encoded by an operon
associated with a sulfur-containing modification to DNA.
The operon is sporadically distributed in bacteria, much
like some restriction enzyme operons. DndD is described
as a putative ATPase. The small number of examples known
so far include species from among the Firmicutes,
Actinomycetes, Proteobacteria, and Cyanobacteria [DNA
metabolism, Restriction/modification].
Length = 650
Score = 36.6 bits (85), Expect = 0.041
Identities = 18/66 (27%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 594 LIRRGEREEEEEEEEEE-EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++RR ++ E E E E E +E+ E+ E +E E EE + E E++
Sbjct: 194 VLRRRKKSELPSSILSEIEALEAELKEQSEKYEDLAQEIAHLRNELEEAQRSLESLEKKF 253
Query: 653 VRGGGK 658
GG
Sbjct: 254 RSEGGD 259
Score = 29.3 bits (66), Expect = 9.1
Identities = 22/86 (25%), Positives = 37/86 (43%), Gaps = 18/86 (20%)
Query: 587 RIENIIQLIRR----------GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
++E +IQ ++R E E EEE E +++ EE+ ++ EE E + E
Sbjct: 377 QLEVLIQQVKRELQDAKSQLLKELRELEEELAEVDKKISTIPSEEQIAQLLEELGEAQNE 436
Query: 637 --------EEEEEEEEEEEEEEEEVR 654
EE + E +E E +R
Sbjct: 437 LFRSEAEIEELLRQLETLKEAIEALR 462
>gnl|CDD|218597 pfam05466, BASP1, Brain acid soluble protein 1 (BASP1 protein).
This family consists of several brain acid soluble
protein 1 (BASP1) or neuronal axonal membrane protein
NAP-22. The BASP1 is a neuron enriched Ca(2+)-dependent
calmodulin-binding protein of unknown function.
Length = 233
Score = 36.0 bits (82), Expect = 0.041
Identities = 19/55 (34%), Positives = 32/55 (58%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EEE +E EE + E EV+E +EE+ +++ ++ + EE+E E+ KEE
Sbjct: 31 EEEGTPKENEEAQAAAETTEVKEAKEEKPDKDAQDTANKTEEKEGEKEAAAAKEE 85
Score = 30.2 bits (67), Expect = 2.9
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 3/55 (5%)
Query: 601 EEEEEEEEEEEEE---EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EEE +E EE + E E +E +EE+ ++ ++ + EE+E E+E +EE
Sbjct: 31 EEEGTPKENEEAQAAAETTEVKEAKEEKPDKDAQDTANKTEEKEGEKEAAAAKEE 85
Score = 29.8 bits (66), Expect = 3.8
Identities = 16/54 (29%), Positives = 29/54 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E +E EE + E E +E +EE +++ ++ + EE+E E+E +E
Sbjct: 31 EEEGTPKENEEAQAAAETTEVKEAKEEKPDKDAQDTANKTEEKEGEKEAAAAKE 84
Score = 28.6 bits (63), Expect = 8.5
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
++ + E+ +++ ++ + EE+E E+E +EE + E E+ E E + E
Sbjct: 51 VKEAKEEKPDKDAQDTANKTEEKEGEKEAAAAKEEAPKAEPEKTEGAAEAKAE 103
>gnl|CDD|198151 smart01083, Cir_N, N-terminal domain of CBF1 interacting
co-repressor CIR. This is a 45 residue conserved region
at the N-terminal end of a family of proteins referred
to as CIRs (CBF1-interacting co-repressors). CBF1
(centromere-binding factor 1) acts as a transcription
factor that causes repression by binding specifically to
GTGGGAA motifs in responsive promoters, and it requires
CIR as a co-repressor. CIR binds to histone deacetylase
and to SAP30 and serves as a linker between CBF1 and the
histone deacetylase complex.
Length = 37
Score = 32.1 bits (74), Expect = 0.042
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ V + E++ EEE+++ EE +E E+E
Sbjct: 11 KRVWKAEQKAEEEKKKIEERRKEIEKE 37
Score = 31.7 bits (73), Expect = 0.057
Identities = 9/24 (37%), Positives = 18/24 (75%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEE 633
+ E++ EEE+++ EE ++E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 31.4 bits (72), Expect = 0.081
Identities = 10/28 (35%), Positives = 19/28 (67%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEE 622
+R + E++ EEE+++ EE +E E+E
Sbjct: 10 QKRVWKAEQKAEEEKKKIEERRKEIEKE 37
Score = 31.0 bits (71), Expect = 0.11
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEE 632
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 31.0 bits (71), Expect = 0.13
Identities = 10/27 (37%), Positives = 19/27 (70%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEE 625
+R + E++ EEE+++ EE +E E+E
Sbjct: 11 KRVWKAEQKAEEEKKKIEERRKEIEKE 37
Score = 30.6 bits (70), Expect = 0.16
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEE 629
+ E++ EEE+++ EE +E+++E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 29.0 bits (66), Expect = 0.57
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEE 651
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 29.0 bits (66), Expect = 0.57
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEE 652
+ E++ EEE+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 28.3 bits (64), Expect = 1.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEE 637
+ E++ EEE++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.7 bits (60), Expect = 3.6
Identities = 7/24 (29%), Positives = 16/24 (66%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEE 642
+ E++ +E+++ EE +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
Score = 26.7 bits (60), Expect = 3.7
Identities = 8/24 (33%), Positives = 18/24 (75%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEE 636
+ E++ EEE+++++E +E E+E
Sbjct: 14 WKAEQKAEEEKKKIEERRKEIEKE 37
>gnl|CDD|227199 COG4862, MecA, Negative regulator of genetic competence,
sporulation and motility [Posttranslational
modification, protein turnover, chaperones / Signal
transduction mechanisms / Cell motility and secretion].
Length = 224
Score = 35.8 bits (83), Expect = 0.045
Identities = 15/54 (27%), Positives = 33/54 (61%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ + E E ++ +E + +E+ EE E+ EE+ ++ E+EE+ +E E+E + +
Sbjct: 77 KSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDYL 130
Score = 34.3 bits (79), Expect = 0.12
Identities = 15/54 (27%), Positives = 32/54 (59%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ + + E E ++ +E + +E+ EE E EE+ ++ E+EE+ +E E+E +
Sbjct: 75 VTKSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
Score = 32.0 bits (73), Expect = 0.86
Identities = 15/58 (25%), Positives = 32/58 (55%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYVL 668
+ + E E ++ +E + +E+ EE E+ EE+ ++ E+EE ++E +Y+L
Sbjct: 77 KSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDYLYYIL 134
Score = 30.4 bits (69), Expect = 2.2
Identities = 13/51 (25%), Positives = 25/51 (49%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
I E + +E+ EE E+ EE+ ++ +EE+ +E E+E +
Sbjct: 78 SKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPD 128
Score = 28.9 bits (65), Expect = 8.3
Identities = 14/58 (24%), Positives = 31/58 (53%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYVLY 669
+ + E E ++ +E + +E+ EE E+ EE+ ++ E+E +G E+ + Y +
Sbjct: 77 KSKIEGEGPDDLDEFLDMPDEDGAEEGLEQLEEKFDDVEKEEQGDEAEKEPDYLYYIL 134
>gnl|CDD|115071 pfam06390, NESP55, Neuroendocrine-specific golgi protein P55
(NESP55). This family consists of several mammalian
neuroendocrine-specific golgi protein P55 (NESP55)
sequences. NESP55 is a novel member of the chromogranin
family and is a soluble, acidic, heat-stable secretory
protein that is expressed exclusively in endocrine and
nervous tissues, although less widely than
chromogranins.
Length = 261
Score = 36.0 bits (82), Expect = 0.046
Identities = 19/57 (33%), Positives = 29/57 (50%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ R E E +E++ + E + E E E + E E + E E E E + E E E E+E
Sbjct: 99 LARPECLEYDEDDFDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDE 155
Score = 34.5 bits (78), Expect = 0.15
Identities = 18/52 (34%), Positives = 26/52 (50%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E E + E+E+ E E E E E++ + E + E E E + E E E E
Sbjct: 82 EPSEPESDHEDEDFEPELARPECLEYDEDDFDTETDSETEPESDIESETEFE 133
Score = 34.1 bits (77), Expect = 0.20
Identities = 18/53 (33%), Positives = 27/53 (50%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ E+E+ E E E E +E++ + E E E E + E E E E E E E +
Sbjct: 89 DHEDEDFEPELARPECLEYDEDDFDTETDSETEPESDIESETEFETEPETEPD 141
Score = 33.7 bits (76), Expect = 0.24
Identities = 18/53 (33%), Positives = 28/53 (52%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E + E+E+ E E E E +E++ + + + E E E + E E E E E E E
Sbjct: 87 ESDHEDEDFEPELARPECLEYDEDDFDTETDSETEPESDIESETEFETEPETE 139
Score = 33.7 bits (76), Expect = 0.24
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E++ + E + E E E + E E E E + E E + E E E E+E +G
Sbjct: 109 EDDFDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDEPGPVVPKG 163
Score = 33.7 bits (76), Expect = 0.25
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E + E+E+ E E E E +E++ E + E E E + E E E E E E
Sbjct: 85 EPESDHEDEDFEPELARPECLEYDEDDFDTETDSETEPESDIESETEFETEPE 137
Score = 33.7 bits (76), Expect = 0.27
Identities = 17/58 (29%), Positives = 29/58 (50%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E E + E+E+ E E E ++ +E++ + E + E E E + E E E + E
Sbjct: 82 EPSEPESDHEDEDFEPELARPECLEYDEDDFDTETDSETEPESDIESETEFETEPETE 139
Score = 31.4 bits (70), Expect = 1.5
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
R +E E E EE E +++ ++ EEEEEE+EEE+++
Sbjct: 188 RAPPSTQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQP 231
Score = 31.0 bits (69), Expect = 1.6
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+E E E EE + +++ + EEEEEE+EEE+++ R
Sbjct: 194 QEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHR 233
Score = 31.0 bits (69), Expect = 1.7
Identities = 16/45 (35%), Positives = 26/45 (57%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
RR +E E E EE E +++ + +EEEEE+EEE+++
Sbjct: 187 RRAPPSTQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQP 231
Score = 30.2 bits (67), Expect = 2.9
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE---EEEEEEEEEEVRG 655
E +E++ + E + E E E E E E E E E E + E E E E+ G
Sbjct: 106 EYDEDDFDTETDSETEPESDIESETEFETEPETEPDTAPTTEPETEPEDEPG 157
Score = 30.2 bits (67), Expect = 3.1
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+E E E EE E +++ + EEEEEE+EEE+++
Sbjct: 194 QEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQP 231
Score = 30.2 bits (67), Expect = 3.2
Identities = 15/42 (35%), Positives = 25/42 (59%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+E E E EE E +++ + EEEEEE+EEE+++ +
Sbjct: 194 QEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQPHRCK 235
Score = 30.2 bits (67), Expect = 3.2
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+E E E EE E + ++ + EEEEEE+EEE+++
Sbjct: 194 QEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQP 231
Score = 30.2 bits (67), Expect = 3.3
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+E E E EE E +++ + EEEEEE+EEE+++
Sbjct: 194 QEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQP 231
Score = 29.8 bits (66), Expect = 4.4
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E E E EE E ++ + EEEEEE+EEE+++
Sbjct: 194 QEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQP 231
Score = 28.7 bits (63), Expect = 9.5
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
R +E E E EE E ++ + EEEEEE+EEE+++
Sbjct: 187 RRAPPSTQEPESAREGEEPERGPLDKDPRDPEEEEEEKEEEKQQP 231
>gnl|CDD|234172 TIGR03345, VI_ClpV1, type VI secretion ATPase, ClpV1 family.
Members of this protein family are homologs of ClpB, an
ATPase associated with chaperone-related functions.
These ClpB homologs, designated ClpV1, are a key
component of the bacterial pathogenicity-associated type
VI secretion system [Protein fate, Protein and peptide
secretion and trafficking, Cellular processes,
Pathogenesis].
Length = 852
Score = 36.8 bits (86), Expect = 0.046
Identities = 16/68 (23%), Positives = 28/68 (41%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E++ + I E E + E E + +E E E+ E E E ++E+E
Sbjct: 420 ALEDLRRRIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKEL 479
Query: 647 EEEEEEVR 654
E +R
Sbjct: 480 VEAILALR 487
Score = 33.0 bits (76), Expect = 0.59
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE-------- 638
RI + + ERE + +E E E E E+ E ++E+E
Sbjct: 427 RIAALELELDALEREAALGADHDERLAELRAELAALEAELAALEARWQQEKELVEAILAL 486
Query: 639 -EEEEEEEEEEEEEE 652
E E + + +++
Sbjct: 487 RAELEADADAPADDD 501
>gnl|CDD|219911 pfam08572, PRP3, pre-mRNA processing factor 3 (PRP3). Pre-mRNA
processing factor 3 (PRP3) is a U4/U6-associated
splicing factor. The human PRP3 has been implicated in
autosomal retinitis pigmentosa.
Length = 222
Score = 35.8 bits (83), Expect = 0.047
Identities = 14/61 (22%), Positives = 24/61 (39%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+ R +Q I +G+ ++ EE E + EEEE EE + + +
Sbjct: 7 PRMAEAKRKKRRRRGLQFIEKGKFSQQAEELRREAKLEEEEARISEEAQNAGLKSATDLA 66
Query: 637 E 637
E
Sbjct: 67 E 67
>gnl|CDD|150420 pfam09744, Jnk-SapK_ap_N, JNK_SAPK-associated protein-1. This is
the N-terminal 200 residues of a set of proteins
conserved from yeasts to humans. Most of the proteins in
this entry have an RhoGEF pfam00621 domain at their
C-terminal end.
Length = 158
Score = 35.1 bits (81), Expect = 0.047
Identities = 27/84 (32%), Positives = 48/84 (57%), Gaps = 11/84 (13%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE-- 646
E+ +L + ERE+E ++ E++ E E+E E+E++E+Q++ E+ EE + E + +
Sbjct: 57 EDNERLSTQYEREKELRKQAEQKLLEFEDELEQEKKELQKKIEDLEENVRQLELKAKNLS 116
Query: 647 ------EEEEEEVRGGGKEEISLH 664
EE E E++ KE SLH
Sbjct: 117 DQVSRLEERETELK---KEYNSLH 137
Score = 34.3 bits (79), Expect = 0.071
Identities = 23/72 (31%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE- 646
+EN+ L + E E E E+ E + E E+E ++ E++ E E+E E+E++E
Sbjct: 35 LENLDSLASENQELEVELELLREDNERLSTQYEREKELRKQAEQKLLEFEDELEQEKKEL 94
Query: 647 ----EEEEEEVR 654
E+ EE VR
Sbjct: 95 QKKIEDLEENVR 106
Score = 28.5 bits (64), Expect = 7.4
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E +E E E E E+ + + E E+E ++ E++ E E+E+ KE
Sbjct: 44 ENQELEVELELLREDNERLSTQYEREKELRKQAEQKLLEFEDELEQEKKE 93
>gnl|CDD|221177 pfam11708, Slu7, Pre-mRNA splicing Prp18-interacting factor. The
spliceosome, an assembly of snRNAs (U1, U2, U4/U6, and
U5) and proteins, catalyzes the excision of introns from
pre-mRNAs in two successive trans-esterification
reactions. Step 2 depends upon integral spliceosome
constituents such as U5 snRNA and Prp8 and
non-spliceosomal proteins Prp16, Slu7, Prp18, and Prp22.
ATP hydrolysis by the DEAH-box enzyme Prp16 promotes a
conformational change in the spliceosome that leads to
protection of the 3'ss from targeted RNase H cleavage.
This change, which probably reflects binding of the 3'ss
PyAG in the catalytic centre of the spliceosome,
requires the ordered recruitment of Slu7, Prp18, and
Prp22 to the spliceosome. There is a close functional
relationship between Prp8, Prp18, and Slu7, and Prp18
interacts with Slu7, so that together they recruit Prp22
to the spliceosome. Most members of the family carry a
zinc-finger of the CCHC-type upstream of this domain.
Length = 236
Score = 35.9 bits (83), Expect = 0.047
Identities = 13/51 (25%), Positives = 31/51 (60%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E +E EE E+ EE ++++ ++E++ ++ + E+E+EE +E ++
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESDMGDSD 67
Score = 31.2 bits (71), Expect = 1.4
Identities = 13/46 (28%), Positives = 29/46 (63%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E +E EE E+ EE ++ + ++E++ ++ + E+E+EE +E +
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESD 62
Score = 30.1 bits (68), Expect = 3.1
Identities = 13/46 (28%), Positives = 28/46 (60%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E +E EE E+ EE ++ + +E++ ++ + E+E+EE +E +
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESD 62
Score = 30.1 bits (68), Expect = 3.4
Identities = 14/57 (24%), Positives = 30/57 (52%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E +E EE E+ EE ++ ++E++ ++ + E+E+EE +E + K +
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESDMGDSDSKTRTT 73
Score = 28.9 bits (65), Expect = 8.1
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E +E EE E+ EE ++ + ++ + ++ + E+E+EE +E +
Sbjct: 17 SEYKEVVEEYEKLEELRKKLKAKKEDDSDDTDYEDEDEELYLDESD 62
>gnl|CDD|222447 pfam13904, DUF4207, Domain of unknown function (DUF4207). This
family is found in eukaryotes; it has several conserved
tryptophan residues. The function is not known.
Length = 261
Score = 35.9 bits (83), Expect = 0.050
Identities = 12/54 (22%), Positives = 32/54 (59%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ E +EE ++ +E E + ++++++ EEE ++ ++++EEEE + +
Sbjct: 170 KPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEEA 223
Score = 35.9 bits (83), Expect = 0.050
Identities = 14/53 (26%), Positives = 37/53 (69%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ ER +EE ++ +E E ++ ++++++ +EE ++ ++++EEEE +++ EE
Sbjct: 170 KPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 33.9 bits (78), Expect = 0.21
Identities = 13/55 (23%), Positives = 31/55 (56%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
Q R+ + ++ EE++++E E+E EE E + +E+ EE ++ ++ ++
Sbjct: 97 QAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTP 151
Score = 33.5 bits (77), Expect = 0.26
Identities = 15/69 (21%), Positives = 36/69 (52%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+Q + ++++E E+E EE E + +E+ EE +++ ++ ++ + ++E E
Sbjct: 104 LQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAESASS 163
Query: 652 EVRGGGKEE 660
+ G K E
Sbjct: 164 SLSGSAKPE 172
Score = 33.2 bits (76), Expect = 0.35
Identities = 13/56 (23%), Positives = 34/56 (60%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ +R+++ ++ EE++++E E+E EE E Q +E+ EE ++ ++ ++
Sbjct: 96 KQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTP 151
Score = 33.2 bits (76), Expect = 0.35
Identities = 13/43 (30%), Positives = 26/43 (60%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ + +++ ++ EE Q++E E+E EE E + +E+ EE R
Sbjct: 97 QAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCR 139
Score = 32.8 bits (75), Expect = 0.53
Identities = 14/55 (25%), Positives = 35/55 (63%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ E +EE ++ +E E ++ ++++ + EEE ++ ++++EEEE +++ EE
Sbjct: 168 SAKPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 31.6 bits (72), Expect = 1.1
Identities = 9/35 (25%), Positives = 24/35 (68%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
+ ++++++ EEE ++ ++++EEEE + + EE
Sbjct: 188 ELKKLKQQQQKREEERRKQRKKQQEEEERKQKAEE 222
Score = 31.2 bits (71), Expect = 1.5
Identities = 13/57 (22%), Positives = 31/57 (54%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ + EE++++E E+E EE E + +E EE ++ ++ ++ + ++E E
Sbjct: 103 KLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTPKHKKEAAE 159
Score = 31.2 bits (71), Expect = 1.5
Identities = 14/52 (26%), Positives = 34/52 (65%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E +EE ++ +E E ++ ++ Q++ EEE ++ ++++EEEE +++ E
Sbjct: 170 KPERNVSQEEAKKRLQEWELKKLKQQQQKREEERRKQRKKQQEEEERKQKAE 221
Score = 31.2 bits (71), Expect = 1.7
Identities = 10/54 (18%), Positives = 31/54 (57%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ + +++ ++ EE++++E E+E EE + +E+ EE ++ ++ ++
Sbjct: 95 AKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQ 148
Score = 30.5 bits (69), Expect = 2.8
Identities = 12/59 (20%), Positives = 35/59 (59%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
L + + +++ ++ EE++++E E+E EE E+++ +E+ EE ++ ++ ++
Sbjct: 93 LSAKQAQRQKKLQKLLEEKQKQEREKEREEAELRQRLAKEKYEEWCRQKAQQAAKQRTP 151
>gnl|CDD|146486 pfam03879, Cgr1, Cgr1 family. Members of this family are
coiled-coil proteins that are involved in pre-rRNA
processing.
Length = 105
Score = 33.9 bits (78), Expect = 0.052
Identities = 14/50 (28%), Positives = 28/50 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E+ E+ E++ + E+E ++E+E E Q + +E +EE+E E+
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEK 80
Score = 33.5 bits (77), Expect = 0.070
Identities = 14/49 (28%), Positives = 29/49 (59%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+R E+ E++ + E+E ++E+E E + +Q +E +EE+E E+
Sbjct: 32 KRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEK 80
Score = 32.0 bits (73), Expect = 0.28
Identities = 12/46 (26%), Positives = 27/46 (58%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+ E+ E++ + E+E+++E+E E + + +E +EE+E
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKE 76
Score = 28.9 bits (65), Expect = 2.9
Identities = 12/50 (24%), Positives = 28/50 (56%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E+ E+ E++ + E+E ++E+E + + + +E +EE+E E+
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYEK 80
Score = 28.1 bits (63), Expect = 4.5
Identities = 12/49 (24%), Positives = 26/49 (53%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+ E+ E++ + E+E ++ +E E + + +E +EE+E E
Sbjct: 31 EKRMEKRLEQQAIKAREKELKDEKEAERQRRIQAIKERRAAKEEKERYE 79
>gnl|CDD|216833 pfam01991, vATP-synt_E, ATP synthase (E/31 kDa) subunit. This
family includes the vacuolar ATP synthase E subunit, as
well as the archaebacterial ATP synthase E subunit.
Length = 195
Score = 35.4 bits (82), Expect = 0.054
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
R+E EE+ EE E EEE E E+ E V+E E++ EE E++E++ E
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAE 48
Score = 33.5 bits (77), Expect = 0.20
Identities = 18/44 (40%), Positives = 26/44 (59%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+E EE+ EE++ E EEE E E+ E EE E++ EE K+
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQ 46
Score = 33.5 bits (77), Expect = 0.22
Identities = 18/44 (40%), Positives = 28/44 (63%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+E EE+ EE E EEE + E+ E EE E++ EE E++E++
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQ 46
Score = 33.1 bits (76), Expect = 0.26
Identities = 20/46 (43%), Positives = 29/46 (63%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E EE+ EE E EEE E E+ E EE E++ EE E++E++ E
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAE 48
Score = 33.1 bits (76), Expect = 0.26
Identities = 20/46 (43%), Positives = 28/46 (60%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+E EE+ EE E EEE E E E EE E++ EE E++E++ E
Sbjct: 3 RQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAE 48
Score = 32.7 bits (75), Expect = 0.34
Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 595 IRRGEREEEEE--EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
IR+ E+ EE E EEE E E+ E EE E+ EE E++E++ E E++ + E
Sbjct: 2 IRQEAEEKAEEIRAEAEEEFEIEKAEAVEEAEKKIEEIYEKKEKQAEMEKQIIISNAKNE 61
Query: 653 VR 654
R
Sbjct: 62 AR 63
>gnl|CDD|224237 COG1318, COG1318, Predicted transcriptional regulators
[Transcription].
Length = 182
Score = 35.2 bits (81), Expect = 0.055
Identities = 15/60 (25%), Positives = 30/60 (50%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E + E E E+ E+E + V+ ++ + E ++E EE+ + E ++G EE+
Sbjct: 101 EGGLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEVIKGEPLEEV 160
Score = 29.8 bits (67), Expect = 3.1
Identities = 16/75 (21%), Positives = 32/75 (42%), Gaps = 6/75 (8%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE------EEEEEEEEE 646
QL+R + +E + E E E+ E+E + E ++ + E E EE+ +
Sbjct: 90 QLVRETYEKLKEGGLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKG 149
Query: 647 EEEEEEVRGGGKEEI 661
E + E +++
Sbjct: 150 EVIKGEPLEEVIDKL 164
Score = 28.3 bits (63), Expect = 8.6
Identities = 13/67 (19%), Positives = 28/67 (41%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
G +E I+ + + + E ++ + E ++E E + + E + E EE +
Sbjct: 103 GLDAVEVEIEKLEKEGLKIRWAVEVLKKIKGEHFPMDKELLEEKLKGEVIKGEPLEEVID 162
Query: 644 EEEEEEE 650
+ E E
Sbjct: 163 KLEYPVE 169
>gnl|CDD|221821 pfam12871, PRP38_assoc, Pre-mRNA-splicing factor 38-associated
hydrophilic C-term. This domain is a hydrophilic region
found at the C-terminus of plant and metazoan
pre-mRNA-splicing factor 38 proteins. The function is
not known.
Length = 97
Score = 33.6 bits (77), Expect = 0.055
Identities = 11/61 (18%), Positives = 22/61 (36%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ EEE EEEE++EE + E + + + + + R +
Sbjct: 11 DEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRARYR 70
Query: 659 E 659
+
Sbjct: 71 D 71
Score = 33.6 bits (77), Expect = 0.055
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE+ +EEEE EEEE++EE + ++ + + + R
Sbjct: 3 VSALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRR 58
Score = 32.8 bits (75), Expect = 0.10
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
EE++ EEEE EEEE++EE + E + + R +
Sbjct: 5 ALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRS 48
Score = 32.4 bits (74), Expect = 0.12
Identities = 13/54 (24%), Positives = 22/54 (40%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EE+ +EEEE EEEE++EE + + + + + R
Sbjct: 5 ALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRR 58
Score = 31.7 bits (72), Expect = 0.24
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE+ +EEEE EEEE++EE + E + + + R +
Sbjct: 5 ALEEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRR 61
Score = 31.7 bits (72), Expect = 0.30
Identities = 12/53 (22%), Positives = 21/53 (39%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E + +EEEE EEEE++EE + E + + + +
Sbjct: 7 EEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRR 59
Score = 30.5 bits (69), Expect = 0.60
Identities = 14/53 (26%), Positives = 22/53 (41%), Gaps = 1/53 (1%)
Query: 601 EEEEEEEEEEEEEEEEEE-EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE+ +EEEE EEEE++EE + E +V + +
Sbjct: 7 EEDLDEEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRR 59
Score = 30.5 bits (69), Expect = 0.75
Identities = 10/57 (17%), Positives = 20/57 (35%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E EEEE++EE + E + + + + + + + R
Sbjct: 12 EEEESEEEEDDEEIRRKAERDVDRGRRSPRRRTRRRSRRRKRSRKRRRRRRDRDRAR 68
>gnl|CDD|220173 pfam09311, Rab5-bind, Rabaptin-like protein. Members of this
family are predominantly found in Rabaptin and allow for
binding to the GTPase Rab5. This interaction is
necessary and sufficient for Rab5-dependent recruitment
of Rabaptin5 to early endosomal membranes.
Length = 180
Score = 35.1 bits (81), Expect = 0.056
Identities = 18/68 (26%), Positives = 27/68 (39%), Gaps = 8/68 (11%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE--------EEEE 644
Q ++ E+E + EE + + + EE E + E EEE + E E
Sbjct: 50 QELQASEQEVIQLPEEVKHLQFLCLQRREELIESRTASEHLEEELKSEIDPLKELKPNLE 109
Query: 645 EEEEEEEE 652
EE E E
Sbjct: 110 EELAAEIE 117
Score = 31.2 bits (71), Expect = 0.99
Identities = 16/57 (28%), Positives = 28/57 (49%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EE E E EEE + E + ++E + EEE E E + + E+++++ E
Sbjct: 78 EELIESRTASEHLEEELKSEIDPLKELKPNLEEELAAEIELPQIQSEKDQLQASLYE 134
Score = 28.5 bits (64), Expect = 8.1
Identities = 15/56 (26%), Positives = 23/56 (41%), Gaps = 6/56 (10%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEE------EEEEEEEEEEEEEEEEEEEE 651
E ++E + E+E + EEV+ + EE E E EEE + E
Sbjct: 42 RGELALTQQELQASEQEVIQLPEEVKHLQFLCLQRREELIESRTASEHLEEELKSE 97
Score = 28.5 bits (64), Expect = 8.3
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+E + E+E + EE + +Q + EE E E EEE +
Sbjct: 50 QELQASEQEVIQLPEEVKHLQFLCLQRREELIESRTASEHLEEELKSE 97
Score = 28.5 bits (64), Expect = 9.1
Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 8/81 (9%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
REE E E EEE + E + + + EEE E E + + E+++ +
Sbjct: 77 REELIESRTASEHLEEELKSEIDPLKELKPNLEEELAAEIELPQIQSEKDQLQASL---Y 133
Query: 660 EI-----SLHFYVLYVLSKGK 675
EI +LH V+ S+G+
Sbjct: 134 EIPARLRTLHNLVIQYESQGR 154
>gnl|CDD|215009 smart01069, CDC37_C, Cdc37 C terminal domain. Cdc37 is a protein
required for the activity of numerous eukaryotic protein
kinases. This domains corresponds to the C terminal
domain whose function is unclear. It is found C terminal
to the Hsp90 chaperone (Heat shocked protein 90) binding
domain pfam08565 and the N terminal kinase binding
domain of Cdc37.
Length = 93
Score = 33.5 bits (77), Expect = 0.058
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
E+E E +E +E+ E EEE +E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 33.1 bits (76), Expect = 0.069
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E+E E +E +E+ + EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 33.1 bits (76), Expect = 0.083
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E+E E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 32.8 bits (75), Expect = 0.11
Identities = 16/33 (48%), Positives = 24/33 (72%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E+E E +E+QE+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 32.0 bits (73), Expect = 0.17
Identities = 15/33 (45%), Positives = 24/33 (72%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E+E E +E +E+ EV+EE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 32.0 bits (73), Expect = 0.20
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E+E E +E +E+ E +E E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 31.6 bits (72), Expect = 0.27
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
E+E E +E +E+ E EEE E+ EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 31.6 bits (72), Expect = 0.28
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E+E E +E +E E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 31.6 bits (72), Expect = 0.28
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
E+E E +E +E+ E EEE ++E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 31.2 bits (71), Expect = 0.31
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E +E +E+ E EEE E+E+EEEE
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEED 92
Score = 31.2 bits (71), Expect = 0.32
Identities = 15/33 (45%), Positives = 22/33 (66%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E+E E +E + Q E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 31.2 bits (71), Expect = 0.34
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E+E E +E +E+ EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 31.2 bits (71), Expect = 0.36
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
E+E E +E +E+ E EEE E ++EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 31.2 bits (71), Expect = 0.36
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 4/45 (8%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
E G + N I E E +E +E+ E EEE E+E+EEEE++
Sbjct: 53 IESGLWGVPNAI----EDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 31.2 bits (71), Expect = 0.37
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E+E E + +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 31.2 bits (71), Expect = 0.38
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEV 626
E E E +E +E+ E EEE E+E+EEEE
Sbjct: 65 EDETEFKELQEQYEVEEEAEKEDEEEED 92
Score = 30.8 bits (70), Expect = 0.43
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
E+E E +E +E+ E EEE E+E+ +EE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.8 bits (70), Expect = 0.52
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E+E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.62
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+ E +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.4 bits (69), Expect = 0.76
Identities = 14/33 (42%), Positives = 23/33 (69%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+E + +E +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 30.1 bits (68), Expect = 0.78
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E+E E +E ++ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 29.7 bits (67), Expect = 1.1
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E+E E +E +E+ E EE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 29.7 bits (67), Expect = 1.1
Identities = 13/33 (39%), Positives = 22/33 (66%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
E+E E +E +E+ E E + E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
Score = 29.7 bits (67), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEV 626
+ +E E +E +E+ E EEE E+E+EEE
Sbjct: 60 VPNAIEDETEFKELQEQYEVEEEAEKEDEEEE 91
Score = 29.3 bits (66), Expect = 1.7
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E+E E + +E+ E EEE E+E+EEEE++
Sbjct: 61 PNAIEDETEFKELQEQYEVEEEAEKEDEEEEDD 93
>gnl|CDD|219106 pfam06614, Neuromodulin, Neuromodulin. This family consists of
several neuromodulin (Axonal membrane protein GAP-43)
sequences and is found in conjunction with pfam00612.
GAP-43 is a neuronal calmodulin-binding phosphoprotein
that is concentrated in growth cones and pre-synaptic
terminals.
Length = 174
Score = 34.8 bits (79), Expect = 0.061
Identities = 16/45 (35%), Positives = 28/45 (62%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+ E+E E +EEE+++ EE + E Q+EE +EEE + ++E
Sbjct: 128 APQPEQETAESSQEEEKKDAVEETKPSESAQQEEAKEEEAKADQE 172
Score = 34.8 bits (79), Expect = 0.072
Identities = 19/83 (22%), Positives = 36/83 (43%)
Query: 570 PSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
PS K ++E + + E+ + + E+E E +EEE+
Sbjct: 89 PSSKADVAPLKEESKKADVPAVTAAAATTPAAEDATAKAAPQPEQETAESSQEEEKKDAV 148
Query: 630 EEEEEEEEEEEEEEEEEEEEEEE 652
EE + E ++EE +EEE + ++
Sbjct: 149 EETKPSESAQQEEAKEEEAKADQ 171
Score = 32.1 bits (72), Expect = 0.54
Identities = 15/43 (34%), Positives = 28/43 (65%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+ E+E E +EEE+++ EE + E ++EE +EEE + ++E
Sbjct: 130 QPEQETAESSQEEEKKDAVEETKPSESAQQEEAKEEEAKADQE 172
Score = 31.8 bits (71), Expect = 0.82
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+P E+ +E E +EEE+++ EE + E QEE +EEE + ++E
Sbjct: 117 TPAAEDATAKAAPQPEQETAESSQEEEKKDAVEETKPSESAQQEEAKEEEAKADQE 172
Score = 31.0 bits (69), Expect = 1.2
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+ E+E E +EEE+++ EE + + ++EE +EEE + ++E
Sbjct: 128 APQPEQETAESSQEEEKKDAVEETKPSESAQQEEAKEEEAKADQE 172
>gnl|CDD|219939 pfam08619, Nha1_C, Alkali metal cation/H+ antiporter Nha1 C
terminus. The C terminus of the plasma membrane Nha1
antiporter plays an important role in the immediate cell
response to hypo-osmotic shock which prevents an
execessive loss of ions and water. This domain is found
with pfam00999.
Length = 430
Score = 35.9 bits (83), Expect = 0.062
Identities = 15/108 (13%), Positives = 34/108 (31%), Gaps = 22/108 (20%)
Query: 566 KTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEE------ 619
K IR K + ++ + E + R + + + EE+ E++
Sbjct: 303 KQIRNLDP--KARREVDLETNAPERVKAPARDEVDTNDSSPLTDSKSEEKLEDDLAHSLL 360
Query: 620 --------------EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ E+E+ E ++ + ++EEE
Sbjct: 361 GSEASERRKNREPSSSSPPSRPRSRRDSEDEDTERDDSDSDDEEETPA 408
Score = 34.8 bits (80), Expect = 0.13
Identities = 12/73 (16%), Positives = 27/73 (36%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+D + + E ++ E E + E ++ E+E+ E +
Sbjct: 337 NDSSPLTDSKSEEKLEDDLAHSLLGSEASERRKNREPSSSSPPSRPRSRRDSEDEDTERD 396
Query: 638 EEEEEEEEEEEEE 650
+ + ++EEE E
Sbjct: 397 DSDSDDEEETPAE 409
Score = 32.5 bits (74), Expect = 0.69
Identities = 12/70 (17%), Positives = 25/70 (35%), Gaps = 3/70 (4%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
T + E ++E+ + G E + E + E+ E ++ +
Sbjct: 343 TDSKSE---EKLEDDLAHSLLGSEASERRKNREPSSSSPPSRPRSRRDSEDEDTERDDSD 399
Query: 637 EEEEEEEEEE 646
++EEE E
Sbjct: 400 SDDEEETPAE 409
Score = 31.3 bits (71), Expect = 1.8
Identities = 11/67 (16%), Positives = 25/67 (37%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
S +E + + + ER + E + E+E+ + ++ + ++
Sbjct: 343 TDSKSEEKLEDDLAHSLLGSEASERRKNREPSSSSPPSRPRSRRDSEDEDTERDDSDSDD 402
Query: 636 EEEEEEE 642
EEE E
Sbjct: 403 EEETPAE 409
>gnl|CDD|220379 pfam09750, DRY_EERY, Alternative splicing regulator. This entry
represents the conserved N-terminal region of SWAP
(suppressor-of-white-apricot protein) proteins. This
region contains two highly conserved motifs, viz: DRY
and EERY, which appear to be the sites for alternative
splicing of exons 2 and 3 of the SWAP mRNA. These
proteins are thus thought to be involved in
auto-regulation of pre-mRNA splicing. Most family
members are associated with two Surp domains pfam01805
and an Arginine- serine-rich binding region towards the
C-terminus.
Length = 121
Score = 33.9 bits (78), Expect = 0.063
Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
Query: 595 IRRGER-EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
I RG R + +EE+E EE EE + ++ + EE E+EEEE+ E +
Sbjct: 51 IPRGSRNRRPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQ 102
Score = 32.0 bits (73), Expect = 0.31
Identities = 15/45 (33%), Positives = 23/45 (51%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ +EE+E EE EE + + EE E+EEEE+ E +
Sbjct: 58 RRPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQ 102
Score = 31.2 bits (71), Expect = 0.53
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 8/54 (14%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEE--------EEEEEEEEEEEVQEEEE 631
I + R + +EE+E EE EE + EE E+EEEE +E +
Sbjct: 49 DYIPRGSRNRRPYKTDEEDEAEERFLNEERYRDLIKNDFEEAEKEEEEKRELAQ 102
>gnl|CDD|221473 pfam12230, PRP21_like_P, Pre-mRNA splicing factor PRP21 like
protein. This domain family is found in eukaryotes, and
is typically between 212 and 238 amino acids in length.
The family is found in association with pfam01805. There
are two completely conserved residues (W and H) that may
be functionally important. PRP21 is required for
assembly of the prespliceosome and it interacts with U2
snRNP and/or pre-mRNA in the prespliceosome. This family
also contains proteins similar to PRP21, such as the
mammalian SF3a. SF3a also interacts with U2 snRNP from
the prespliceosome, converting it to its active form.
Length = 230
Score = 35.5 bits (82), Expect = 0.064
Identities = 26/79 (32%), Positives = 40/79 (50%), Gaps = 4/79 (5%)
Query: 578 SDQDEIGSPRIENIIQLIRR--GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
D E+ P N +LI R ++ + EE + EEEEE EEEEE++ EE++EE
Sbjct: 70 IDVLELPPPLTLN--ELIYRSLEQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESA 127
Query: 636 EEEEEEEEEEEEEEEEEVR 654
++ +E + E R
Sbjct: 128 KKSTPPIKEMKIPAAGESR 146
Score = 30.9 bits (70), Expect = 1.9
Identities = 16/49 (32%), Positives = 27/49 (55%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E++ + EE + +EEE EEEEE+ +EE++EE ++ K
Sbjct: 90 EQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEMK 138
Score = 30.9 bits (70), Expect = 2.0
Identities = 15/48 (31%), Positives = 28/48 (58%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E++ + EE + E +EE EEEEE+ +EE++EE ++ ++
Sbjct: 90 EQKSKALEEPDAAAAPEEEEEMEEEEEDIDEEKKEESAKKSTPPIKEM 137
>gnl|CDD|204467 pfam10376, Mei5, Double-strand recombination repair protein. Mei5
is one of a pair of meiosis-specific proteins which
facilitate the loading of Dmc1 on to Rad51 on DNA at
double-strand breaks during recombination. Recombination
is carried out by a large protein complex based around
the two RecA homologues, Rad51 and Dmc1. This complex
may play both a catalytic and a structural role in the
interaction between homologous chromosomes during
meiosis. Mei5 is seen to contain a coiled-coli region.
Length = 212
Score = 35.2 bits (81), Expect = 0.064
Identities = 21/100 (21%), Positives = 49/100 (49%)
Query: 553 QSLWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEE 612
+S N+ + + I+ W+T Q E S + ++ R G ++ + +E E E+
Sbjct: 72 ESSLKNIDSEENETSNEKLIEKWRTICQSESRSILNSSSPKINRMGGYKDFKRKELEAEK 131
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E + +EE ++++ + E+ E + + E +E ++ E
Sbjct: 132 RKLEYQVDEESDDLRRLKLVEKYEIKNDLSELQELIKKWE 171
>gnl|CDD|191022 pfam04538, BEX, Brain expressed X-linked like family. This is a
family of transcription elongation factors which
includes those referred to as Bex proteins as well as
those named TCEAL7. Bex1 was shown to be a novel link
between neurotrophin signalling, the cell cycle, and
neuronal differentiation, suggesting it might function
by coordinating internal cellular states with the
ability of cells to respond to external signals. TCEAL7
has been shown negatively to regulate the NF-kappaB
pathway, hence being important in ovarian cancer as it
one of the genes frequently downregulated in this
cancer. A closely related protein, TFIIS/TCEA, found in
pfam07500 is involved in transcription elongation and
transcript fidelity. TFIIS/TCEA promotes 3'
endoribonuclease activity of RNA polymerase II (pol II)
and allows pol II to bypass transcript pause or 'arrest'
during elongation process. It is thus possible that BEX
is also acting in this way.
Length = 97
Score = 33.5 bits (77), Expect = 0.069
Identities = 14/39 (35%), Positives = 21/39 (53%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E+ +E E + E E +EEEE+ EE E ++ E R
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEGNFRRR 40
Score = 32.7 bits (75), Expect = 0.11
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E+ +E E + E +EEEE+ EE E ++ E
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEG 35
Score = 31.6 bits (72), Expect = 0.27
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+E E + E E +EEEE+ EE E + G
Sbjct: 6 KENEGKPESEPKEEEEKRPLEEGEGKKPEGN 36
Score = 31.6 bits (72), Expect = 0.27
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E+ +E E + E E +EEEE+ EE E ++ E
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEG 35
Score = 31.6 bits (72), Expect = 0.34
Identities = 21/74 (28%), Positives = 29/74 (39%), Gaps = 18/74 (24%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEE-----------VQEEEE-------EEEEEEEEE 640
E E + E E +EEEE+ EE E ++ + E EE E
Sbjct: 7 ENEGKPESEPKEEEEKRPLEEGEGKKPEGNFRRRLRRSLPNFREDIPNRHLSNEEMIREA 66
Query: 641 EEEEEEEEEEEEVR 654
++ E EE EVR
Sbjct: 67 DDMERFVEEMREVR 80
Score = 30.8 bits (70), Expect = 0.51
Identities = 13/35 (37%), Positives = 19/35 (54%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E+ +E E + E E +EEEE+ EE E + G
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEGN 36
Score = 30.4 bits (69), Expect = 0.80
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E+ +E E + E E +EEEE+ EE E ++ E
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEG 35
Score = 30.0 bits (68), Expect = 0.98
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+ +E E + E + +EEEE+ EE E ++ E +R
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEGNFRRRLR 42
Score = 29.6 bits (67), Expect = 1.2
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E+ +E E + E E +EEEE + EE E ++ E
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEG 35
Score = 29.6 bits (67), Expect = 1.2
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E+ + E + E E +EEEE+ EE E ++ G +
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEGNFRR 39
Score = 28.9 bits (65), Expect = 2.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
E+ +E E + E E +EEEE+ E E ++ E
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEG 35
Score = 28.9 bits (65), Expect = 2.3
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E+ +E E + E E +EEE + EE E ++ E
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEG 35
Score = 28.5 bits (64), Expect = 3.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
E+ +E E + E E +EEEE+ EE E ++ E
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEG 35
Score = 28.5 bits (64), Expect = 3.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E+ +E E + E E +EEE+ EE E ++ E
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEG 35
Score = 28.5 bits (64), Expect = 3.5
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
E+ +E E + E E +EEEE+ ++E E ++ E
Sbjct: 2 EKPCKENEGKPESEPKEEEEKRPLEEGEGKKPEG 35
>gnl|CDD|224337 COG1419, FlhF, Flagellar GTP-binding protein [Cell motility and
secretion].
Length = 407
Score = 35.8 bits (83), Expect = 0.070
Identities = 19/93 (20%), Positives = 36/93 (38%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
R + + + E + ++ E++ EE + ++ E E + +E ++ EE
Sbjct: 59 SELRKFQTREAAKVKDAEAQLLKDPAEKKREERKAAKKIERSTPSLIERKTQEVKDSGEE 118
Query: 644 EEEEEEEEEVRGGGKEEISLHFYVLYVLSKGKI 676
E +E+V EEI F LY
Sbjct: 119 IAEMMRDEKVPIRELEEIPPEFVALYKQEIQSP 151
>gnl|CDD|224559 COG1645, COG1645, Uncharacterized Zn-finger containing protein
[General function prediction only].
Length = 131
Score = 34.0 bits (78), Expect = 0.071
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 6/63 (9%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE------EEEEEEE 651
G RE EEEEEE E E +E+ E+ ++ +E ++E +E+ E E + E
Sbjct: 51 GYREVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEIDEDPASEKLLSVIETLKRIE 110
Query: 652 EVR 654
R
Sbjct: 111 ARR 113
Score = 32.0 bits (73), Expect = 0.40
Identities = 17/72 (23%), Positives = 29/72 (40%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
R EEEEEE E E +E+ E + +E ++E +E+ E+ E + +
Sbjct: 52 YREVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEIDEDPASEKLLSVIETLKRIEA 111
Query: 656 GGKEEISLHFYV 667
+ V
Sbjct: 112 RRDLSRAGRELV 123
Score = 31.7 bits (72), Expect = 0.45
Identities = 14/49 (28%), Positives = 24/49 (48%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E EEEEEEV+ E +E+ E ++ +E ++E E++
Sbjct: 51 GYREVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEIDEDPASEKL 99
Score = 31.7 bits (72), Expect = 0.50
Identities = 15/51 (29%), Positives = 28/51 (54%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E EEEEEE E E +E+++ E ++ +E ++E +E+ E++
Sbjct: 51 GYREVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEIDEDPASEKLLS 101
Score = 29.3 bits (66), Expect = 3.0
Identities = 15/41 (36%), Positives = 19/41 (46%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
EV EEEEEE E E +E+ E + K+EI
Sbjct: 51 GYREVVVEEEEEEVEAEVQEQLRRSRPELPDDSDELKKEID 91
>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413). This is
a family of proteins conserved in fungi. The function is
not known.
Length = 436
Score = 35.9 bits (83), Expect = 0.075
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
++ + E EE+ + + E + + + E EEEEE EE + + G
Sbjct: 66 KKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPIASIG 124
Score = 34.0 bits (78), Expect = 0.24
Identities = 14/53 (26%), Positives = 20/53 (37%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E EE+ + + E + + E EEEEE EE + GG
Sbjct: 73 ESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDPIASIGG 125
Score = 33.2 bits (76), Expect = 0.50
Identities = 12/54 (22%), Positives = 21/54 (38%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
++ + E EE+ + + E + + E EEEEE EE +
Sbjct: 66 KKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPDP 119
Score = 32.8 bits (75), Expect = 0.53
Identities = 18/109 (16%), Positives = 31/109 (28%), Gaps = 13/109 (11%)
Query: 557 DNVPNTNKLKTIRPSIKVWKTSDQ---------DEIGSPRIENIIQLIRRGEREEEEEEE 607
D++P+ K S + DE+ + + R
Sbjct: 6 DSLPDEKAPTKKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPPKKPKEASRPGTPRNP 65
Query: 608 EEE----EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ E EE+ + E + + E EEEEE E
Sbjct: 66 KKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPE 114
Score = 32.1 bits (73), Expect = 1.2
Identities = 13/54 (24%), Positives = 21/54 (38%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R ++ + E EE+ + + E + + E EEEEE EE
Sbjct: 62 PRNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEE 115
Score = 31.7 bits (72), Expect = 1.5
Identities = 13/56 (23%), Positives = 22/56 (39%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R ++ + E EE+ + + E + + E EEEEE EE +
Sbjct: 63 RNPKKSSKPTESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEETPD 118
>gnl|CDD|234504 TIGR04216, halo_surf_glyco, major cell surface glycoprotein.
Members of this family are the S-layer-forming
halobacterial major cell surface glycoprotein. The
highest scores below model cutoffs are fragmentary
paralogs to actual members of the family. Modifications
include at N-linked and O-linked glycosylation, a
C-terminal diphytanylglyceryl modification, and probable
cleavage of the PGF-CTERM tail.
Length = 782
Score = 36.0 bits (83), Expect = 0.076
Identities = 14/55 (25%), Positives = 16/55 (29%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
EE E + E+ EE E E EE EE G G
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTGSSTPGFG 763
Score = 32.9 bits (75), Expect = 0.65
Identities = 11/48 (22%), Positives = 14/48 (29%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE E + E+ +E E E EE EE
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTG 756
Score = 32.2 bits (73), Expect = 1.2
Identities = 11/48 (22%), Positives = 13/48 (27%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E E + E+ EE E E EE EE
Sbjct: 709 EETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTG 756
Score = 32.2 bits (73), Expect = 1.2
Identities = 11/52 (21%), Positives = 17/52 (32%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
++++ ER + E+ EE E E EE EE
Sbjct: 705 VEVVEETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTG 756
Score = 29.8 bits (67), Expect = 5.9
Identities = 10/47 (21%), Positives = 12/47 (25%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E E + E+ E E E EE EE
Sbjct: 710 ETERPDTTTSEDPTTTTTPTTTGPEETTETAEPTTTTEEPTEETTTG 756
>gnl|CDD|217933 pfam04156, IncA, IncA protein. Chlamydia trachomatis is an
obligate intracellular bacterium that develops within a
parasitophorous vacuole termed an inclusion. The
inclusion is non-fusogenic with lysosomes but intercepts
lipids from a host cell exocytic pathway. Initiation of
chlamydial development is concurrent with modification
of the inclusion membrane by a set of C.
trachomatis-encoded proteins collectively designated
Incs. One of these Incs, IncA, is functionally
associated with the homotypic fusion of inclusions. This
family probably includes members of the wider Inc family
rather than just IncA.
Length = 186
Score = 34.7 bits (80), Expect = 0.076
Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 6/60 (10%)
Query: 599 EREEEEEEEEEEEEEEE------EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
R ++ EE + E E + +EE E+ EE + E E E E+ +E+ + E + EE
Sbjct: 69 VRPQKLEELQGELSELKQQLSELQEELEDLEERIAELESELEDLKEDLQLLRELLKSLEE 128
>gnl|CDD|227931 COG5644, COG5644, Uncharacterized conserved protein [Function
unknown].
Length = 869
Score = 35.8 bits (82), Expect = 0.078
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
G ++EN I EEE + EE E+ +E+ V E++EE + +E +EE
Sbjct: 12 GKKQLENKILH------SYEEESAGFDSEELEDNDEQGYSFGVNSEDDEEIDSDEAFDEE 65
Query: 644 EEEEEEEEE 652
+E+ +
Sbjct: 66 DEKRFADWS 74
Score = 35.1 bits (80), Expect = 0.16
Identities = 17/96 (17%), Positives = 39/96 (40%), Gaps = 3/96 (3%)
Query: 561 NTNKLKTIR---PSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEE 617
N K ++ S+ K ++ + S ++ L + ++ E+ E + ++
Sbjct: 91 NNTKEISLNDSDDSVNSDKLENEGSVSSIDENELVDLDTLLDNDQPEKNESGNNDHATDK 150
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E + + E EE + E E E + + ++E
Sbjct: 151 ENLLESDASSSNDSESEESDSESEIESSDSDHDDEN 186
Score = 31.2 bits (70), Expect = 2.3
Identities = 10/60 (16%), Positives = 25/60 (41%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++E E + + E EE + + E E + + ++E + + + + K+E
Sbjct: 146 HATDKENLLESDASSSNDSESEESDSESEIESSDSDHDDENSDSKLDNLRNYIVSLKKDE 205
Score = 29.3 bits (65), Expect = 9.1
Identities = 10/61 (16%), Positives = 24/61 (39%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E EE + E E E + + ++E + + + +++E + E + +
Sbjct: 162 NDSESEESDSESEIESSDSDHDDENSDSKLDNLRNYIVSLKKDEADAESVLSSDDNDSIE 221
Query: 659 E 659
E
Sbjct: 222 E 222
>gnl|CDD|223880 COG0810, TonB, Periplasmic protein TonB, links inner and outer
membranes [Cell envelope biogenesis, outer membrane].
Length = 244
Score = 35.1 bits (81), Expect = 0.078
Identities = 13/52 (25%), Positives = 23/52 (44%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
L+ E EE + E E EE+ + E E E + +E+ + E++
Sbjct: 42 FLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKK 93
Score = 34.4 bits (79), Expect = 0.13
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E EE + E E EE+ + + E E + +E+ + E++
Sbjct: 48 VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKK 93
Score = 34.0 bits (78), Expect = 0.18
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E EE + E E EE+ + E E + +E+ + E++
Sbjct: 48 VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKK 93
Score = 31.7 bits (72), Expect = 0.90
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E EE + E E EE+ + E E E + +E+ + E++
Sbjct: 48 VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKK 93
Score = 31.3 bits (71), Expect = 1.5
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E EE + E E EE+ + E E + +E+ + E++
Sbjct: 48 VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKK 93
Score = 30.9 bits (70), Expect = 1.8
Identities = 12/44 (27%), Positives = 18/44 (40%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EE + E E E Q + E E E + +E+ + E
Sbjct: 48 VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPE 91
Score = 30.9 bits (70), Expect = 1.9
Identities = 10/52 (19%), Positives = 25/52 (48%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE + E E EE+ + E E + + +E+ + E++ ++ + + +
Sbjct: 53 TEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPK 104
Score = 30.9 bits (70), Expect = 1.9
Identities = 12/46 (26%), Positives = 21/46 (45%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E EE + E E EE+ + E E E + +E+ + E++
Sbjct: 48 VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKK 93
Score = 30.5 bits (69), Expect = 2.1
Identities = 10/53 (18%), Positives = 25/53 (47%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E + E E EE+ + E E E + +E+ + E++ ++ + + + +
Sbjct: 53 TEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKP 105
Score = 30.5 bits (69), Expect = 2.2
Identities = 11/53 (20%), Positives = 26/53 (49%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE + E E EE+ + E E E + +E+ + E++ ++ + + + +
Sbjct: 54 EEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPK 106
Score = 30.1 bits (68), Expect = 3.0
Identities = 9/52 (17%), Positives = 25/52 (48%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ E E EE+ + E E E + +E+ + E++ ++ + + + + +
Sbjct: 57 QPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPK 108
Score = 29.4 bits (66), Expect = 5.2
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E EE + E E EE+ E E E + +E+ + E++
Sbjct: 48 VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKK 93
Score = 29.4 bits (66), Expect = 5.3
Identities = 12/57 (21%), Positives = 19/57 (33%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E + E EE + E E EE+ + E E E + +E+
Sbjct: 33 GIELVPLAVFLLAAKVLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPK 89
Score = 29.4 bits (66), Expect = 5.6
Identities = 12/47 (25%), Positives = 21/47 (44%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E EE + E E EE+ + E E E + +E+ + E++
Sbjct: 48 VLEAPTEEPQPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKP 94
Score = 29.0 bits (65), Expect = 7.0
Identities = 10/55 (18%), Positives = 28/55 (50%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ E E EE+ + E E E + +E+ + E++ ++ + + + + + + +V
Sbjct: 57 QPEPEPPEEQPKPPTEPETPPEPTPPKPKEKPKPEKKPKKPKPKPKPKPKPKPKV 111
>gnl|CDD|222117 pfam13422, DUF4110, Domain of unknown function (DUF4110). This is
a family that is found predominantly at the C-terminus
of Kelch-containing proteins. However, the exact
function of this region is not known.
Length = 99
Score = 33.1 bits (76), Expect = 0.079
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 5/57 (8%)
Query: 587 RIENIIQLIRRG-----EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ +L + ER E EE E+EEEE+ EE +E++ E
Sbjct: 40 AELSGKELKKDAFDLAEERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 32.7 bits (75), Expect = 0.11
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
EE E E E+EEEE+ EE +E++ G G+
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEGR 97
Score = 32.7 bits (75), Expect = 0.12
Identities = 16/41 (39%), Positives = 21/41 (51%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE E++EE E+EEEE+ EE +E GG E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 32.3 bits (74), Expect = 0.14
Identities = 14/44 (31%), Positives = 22/44 (50%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
EE E EE++ E+EEEE+ EE +E++ G +
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEGRRR 99
Score = 30.8 bits (70), Expect = 0.51
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
EE E EE E+EEE Q EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.8 bits (70), Expect = 0.56
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
EE E EE E+EEEE EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.8 bits (70), Expect = 0.56
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE E EE +++EEEE+ EE +E++ E R
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEGR 97
Score = 30.4 bits (69), Expect = 0.73
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE E EE E+ +EE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 30.0 bits (68), Expect = 1.1
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
EE E+EEEE+ EE + + G E
Sbjct: 64 EELRALEDEEEEQAGIEEVVSLAKEKDWGGGEGRRR 99
Score = 29.2 bits (66), Expect = 1.7
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
EE E EE E+EEEE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 28.9 bits (65), Expect = 2.8
Identities = 14/44 (31%), Positives = 19/44 (43%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE E EE E +EEE+ EE +E++ E R
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEGRRR 99
Score = 28.5 bits (64), Expect = 3.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
EE E EE E+EEEE+ EE +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
Score = 28.1 bits (63), Expect = 5.3
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 601 EEEEEEEEEEEEEEEEEEEEE--EEEEVQEEEEEEEEEEEE 639
EE E EE E+EEEE+ EE V +E++ E
Sbjct: 56 EERYWELREELRALEDEEEEQAGIEEVVSLAKEKDWGGGEG 96
>gnl|CDD|220063 pfam08895, DUF1840, Domain of unknown function (DUF1840). This
family of proteins are functionally uncharacterized.
Length = 105
Score = 33.3 bits (77), Expect = 0.079
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E + EE E+E+++E+EE+EE V
Sbjct: 50 EAAIAAEEARRAPPAEDEDDDEDEEDEEPAVS 81
Score = 30.3 bits (69), Expect = 1.0
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEV 626
I + EE E+E+++E+EE+EE V
Sbjct: 46 IARLEAAIAAEEARRAPPAEDEDDDEDEEDEEPAV 80
>gnl|CDD|217940 pfam04177, TAP42, TAP42-like family. The TOR signalling pathway
activates a cell-growth program in response to
nutrients. TIP41 (pfam04176) interacts with TAP42 and
negatively regulates the TOR signaling pathway.
Length = 335
Score = 35.3 bits (82), Expect = 0.081
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E E+E + Q E EEEE++E++EE+++EE
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEE 320
Score = 35.3 bits (82), Expect = 0.098
Identities = 15/45 (33%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
Query: 614 EEEEEEEEEEEEVQEEEEE----EEEEEEEEEEEEEEEEEEEEVR 654
+E E+E + V + E EEEE++E++EE+++EE + R
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLKAR 325
Score = 35.0 bits (81), Expect = 0.12
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+E E+E + + E EEEE++E++EE+++EE +
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 34.6 bits (80), Expect = 0.15
Identities = 12/39 (30%), Positives = 21/39 (53%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E+E + + E EEEE E++EE+++EE +
Sbjct: 285 EQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 34.2 bits (79), Expect = 0.18
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+E E+E + + E EEEE++E++EE+++EE +
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 33.8 bits (78), Expect = 0.26
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+E E+E + + E EEEE++E++EE+++EE +
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 33.8 bits (78), Expect = 0.30
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E E+E + + E EEEE++E++EE+++EE +
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 32.7 bits (75), Expect = 0.59
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+E E+E + + E +EEE++E++EE+++EE +
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 32.7 bits (75), Expect = 0.68
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE 623
DE ++ GE EEEE++E++EE+++EE +
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 32.3 bits (74), Expect = 0.86
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+E E+E + + E +EE++E++EE+++EE +
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 31.9 bits (73), Expect = 1.0
Identities = 12/43 (27%), Positives = 24/43 (55%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+E E+E + + EEEE++E++EE+++EE +
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 31.5 bits (72), Expect = 1.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E+E + + E EEEE++E EE+++EE +
Sbjct: 284 LEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 31.1 bits (71), Expect = 1.8
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+E E+E + + E E +E++E++EE+++EE +
Sbjct: 281 DEYLEQEMKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 29.6 bits (67), Expect = 5.1
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
++RG + E EEEE++E++EE+++ + +
Sbjct: 288 MKRGGVPQGGGEAAASAEEEEDDEDDEEDDDEETLK 323
Score = 29.2 bits (66), Expect = 7.3
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
G E EEEE++E++EE+++EE + +
Sbjct: 296 GGGEAAASAEEEEDDEDDEEDDDEETLKARA 326
>gnl|CDD|218517 pfam05236, TAF4, Transcription initiation factor TFIID component
TAF4 family. This region of similarity is found in
Transcription initiation factor TFIID component TAF4.
Length = 255
Score = 35.1 bits (81), Expect = 0.082
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
QL ++++EEEE E E E+ E+ Q+ +EE++ E EE
Sbjct: 114 QLRFLAQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 34.3 bits (79), Expect = 0.15
Identities = 13/42 (30%), Positives = 26/42 (61%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++++EEEE E E+ E+ E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 34.3 bits (79), Expect = 0.15
Identities = 16/50 (32%), Positives = 28/50 (56%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+RR R ++++EEEE E E E+ Q +++ +EE++ E EE
Sbjct: 111 VRRQLRFLAQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 33.5 bits (77), Expect = 0.29
Identities = 13/42 (30%), Positives = 25/42 (59%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
++++EEEE E E E+ E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 33.1 bits (76), Expect = 0.32
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++++EEEE E + E+ E+ +++ +EE++ E EE R
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEETR 162
Score = 32.8 bits (75), Expect = 0.46
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++++EEEE E E E E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 32.4 bits (74), Expect = 0.65
Identities = 12/42 (28%), Positives = 26/42 (61%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++++EEEE E E +++ E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 32.4 bits (74), Expect = 0.72
Identities = 12/42 (28%), Positives = 24/42 (57%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++++EEEE E E+ E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 30.8 bits (70), Expect = 2.0
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
++++EEEE E E E+ ++ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
Score = 30.4 bits (69), Expect = 2.4
Identities = 12/42 (28%), Positives = 23/42 (54%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
++++EEEE E E E+ +++ +EE++ E EE
Sbjct: 119 AQKQKEEEERRVERRRELGLEDPEQLRLKQKAKEEQKAESEE 160
>gnl|CDD|226246 COG3723, RecT, Recombinational DNA repair protein (RecE pathway)
[DNA replication, recombination, and repair].
Length = 276
Score = 35.2 bits (81), Expect = 0.083
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+E E E + EE+ E+ + E E E +E +EE E+ + EE+E
Sbjct: 222 TEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKEP 272
Score = 32.9 bits (75), Expect = 0.51
Identities = 16/50 (32%), Positives = 27/50 (54%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+E E E + EE+ E+ + + E E +E +EE E+ + EE+E
Sbjct: 222 TEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKE 271
Score = 31.7 bits (72), Expect = 0.99
Identities = 16/52 (30%), Positives = 27/52 (51%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E+E E E + EE+ E+ + E E +E +EE E+ + EE+E +
Sbjct: 222 TEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKEPI 273
Score = 31.7 bits (72), Expect = 1.0
Identities = 17/56 (30%), Positives = 29/56 (51%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++ E+E E E + EE+ E+ + E E E +E +EE E+ + EE+E
Sbjct: 217 MQTAVTEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKEP 272
Score = 31.0 bits (70), Expect = 1.9
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E+E E E + EE+ E + E E E +E +EE E+ + E + E
Sbjct: 222 TEDEAERREPLDVTPEEDSEQLDSEPSGEPEAQETDEENEKPIDVSEEKEPITE 275
>gnl|CDD|218688 pfam05680, ATP-synt_E, ATP synthase E chain. This family consists
of several ATP synthase E chain sequences which are
components of the CF(0) subunit.
Length = 83
Score = 32.8 bits (75), Expect = 0.084
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
R +++EE+ E E +E+ E+ + ++ Q ++E
Sbjct: 30 RSLKKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 30.1 bits (68), Expect = 0.72
Identities = 6/34 (17%), Positives = 22/34 (64%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+++EE+ E E +E+ +++ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 30.1 bits (68), Expect = 0.79
Identities = 7/40 (17%), Positives = 24/40 (60%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
+++EE+ E + +E+ E+ + ++++ ++E + + G
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKSLAEG 72
Score = 29.4 bits (66), Expect = 1.5
Identities = 7/34 (20%), Positives = 22/34 (64%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+++EE+ E E +E++ E+ + ++++ ++E
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEA 66
Score = 29.0 bits (65), Expect = 1.8
Identities = 9/37 (24%), Positives = 20/37 (54%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
+++EE+ E E +E+ E+ + + + +E SL
Sbjct: 33 KKKEEKIREYEAQEKLIEKAKAAYAKKKQAKQEAKSL 69
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 35.1 bits (81), Expect = 0.084
Identities = 17/69 (24%), Positives = 31/69 (44%), Gaps = 3/69 (4%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E ++ + + E EE E + + E + EE +E E+++EE+ ++E
Sbjct: 89 EPDDPTSGYASISQADRVEGEEPESI--RKWRERRDLRIEERDEASEKKKEELIEKAQKE 146
Query: 661 ISLHFYVLY 669
I FY Y
Sbjct: 147 ID-DFYENY 154
Score = 32.4 bits (74), Expect = 0.56
Identities = 16/66 (24%), Positives = 34/66 (51%), Gaps = 6/66 (9%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEV------QEEEEEEEEEEEEEEEEEEEEEEE 650
R R+ EE +E E+++EE E+ ++E+ E++E+ + + +E E+ E +
Sbjct: 118 RERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAEQFLAERD 177
Query: 651 EEVRGG 656
+ G
Sbjct: 178 DFSSPG 183
Score = 30.1 bits (68), Expect = 2.7
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ + E EE E + E ++ EE +E E+++EE E+ ++E+
Sbjct: 92 DPTSGYASISQADRVEGEEPESIRKWRERRDLRIEERDEASEKKKEELIEKAQKEI 147
>gnl|CDD|129694 TIGR00606, rad50, rad50. All proteins in this family for which
functions are known are involvedin recombination,
recombinational repair, and/or non-homologous end
joining.They are components of an exonuclease complex
with MRE11 homologs. This family is distantly related to
the SbcC family of bacterial proteins.This family is
based on the phylogenomic analysis of JA Eisen (1999,
Ph.D. Thesis, Stanford University).
Length = 1311
Score = 35.8 bits (82), Expect = 0.088
Identities = 21/93 (22%), Positives = 49/93 (52%), Gaps = 4/93 (4%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
S +E+ S +++ L RR + EE+ E E + E ++ +E++ E E++++
Sbjct: 864 SKTNELKSEKLQIGTNLQRRQQFEEQLVELSTEVQSLIREIKDAKEQDSPLETFLEKDQQ 923
Query: 638 EEEE----EEEEEEEEEEEVRGGGKEEISLHFY 666
E+EE +E ++ +++V ++ ++H Y
Sbjct: 924 EKEELISSKETSNKKAQDKVNDIKEKVKNIHGY 956
Score = 29.6 bits (66), Expect = 7.0
Identities = 14/68 (20%), Positives = 33/68 (48%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
IE+ + I + + E + + +++ E++ E E + E+V + +E+ + +
Sbjct: 256 EIEHNLSKIMKLDNEIKALKSRKKQMEKDNSELELKMEKVFQGTDEQLNDLYHNHQRTVR 315
Query: 647 EEEEEEVR 654
E+E E V
Sbjct: 316 EKERELVD 323
>gnl|CDD|173502 PTZ00266, PTZ00266, NIMA-related protein kinase; Provisional.
Length = 1021
Score = 35.9 bits (82), Expect = 0.090
Identities = 26/83 (31%), Positives = 35/83 (42%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+R ER E EE E E E E E E E E E E E + E + + E E + +
Sbjct: 458 KRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRLER 517
Query: 656 GGKEEISLHFYVLYVLSKGKIAG 678
E+ + Y L + G AG
Sbjct: 518 DRLEKARRNSYFLKGMENGLSAG 540
Score = 32.8 bits (74), Expect = 0.71
Identities = 21/60 (35%), Positives = 26/60 (43%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
I R EREE E E E E E E E E E + E + E + + E E + E R
Sbjct: 460 IERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRLERDR 519
Score = 31.6 bits (71), Expect = 1.5
Identities = 18/59 (30%), Positives = 27/59 (45%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
I+ + R ERE E E E E E E E E E ++ + E + + E E + E +
Sbjct: 460 IERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERVDRLERD 518
Score = 30.1 bits (67), Expect = 4.7
Identities = 20/59 (33%), Positives = 25/59 (42%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
I +R E E EE E E E E E E +E E E E + E + + E E V
Sbjct: 454 ILEKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERERV 512
Score = 30.1 bits (67), Expect = 4.8
Identities = 19/56 (33%), Positives = 24/56 (42%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E++ E E EE E E E E E E E E E E E + E + + E R
Sbjct: 456 EKKRIERLEREERERLERERMERIERERLERERLERERLERDRLERDRLDRLERER 511
>gnl|CDD|224712 COG1799, COG1799, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 167
Score = 34.3 bits (79), Expect = 0.091
Identities = 11/49 (22%), Positives = 20/49 (40%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++EE+ EE+ +E + V+ EE + + E E V
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNVV 63
Score = 33.5 bits (77), Expect = 0.16
Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 3/46 (6%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE---EEEEEEEEVRG 655
++EE+ EE+ QE + E EE + + E E+RG
Sbjct: 15 PLDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRG 60
Score = 32.8 bits (75), Expect = 0.32
Identities = 13/63 (20%), Positives = 22/63 (34%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++EE+ EE+ +E + E EE + + E E V +
Sbjct: 16 LDDEEDYYEEDPRQEPRDPAVEPEEYAPPKYNFRKREPARMEMRGNVVNMPRVAAQDSSK 75
Query: 661 ISL 663
I L
Sbjct: 76 IVL 78
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen. This
family consists of several Theileria P67 surface
antigens. A stage specific surface antigen of Theileria
parva, p67, is the basis for the development of an
anti-sporozoite vaccine for the control of East Coast
fever (ECF) in cattle. The antigen has been shown to
contain five distinct linear peptide sequences
recognised by sporozoite-neutralising murine monoclonal
antibodies.
Length = 727
Score = 35.8 bits (82), Expect = 0.094
Identities = 29/147 (19%), Positives = 55/147 (37%), Gaps = 33/147 (22%)
Query: 521 AAKNPTTGTTPFKLCTPEDFKPFVTALMNSEWQSLWDNVPNTNKLKTI---RPSIKVWKT 577
G +P P VT L ++ Q P+ + KT+ + KVWK+
Sbjct: 17 GGDKMPAGESPR----TSKPSPLVT-LESAITQ------PSKDPFKTVGALSKATKVWKS 65
Query: 578 S-----DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
+ D + +P E I +E +E E ++ E ++ +
Sbjct: 66 AVSSSDDSKTVPTPVSEPNIT--------------RSFQEPVSQESEVQDNTEQNQDTKG 111
Query: 633 EEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+ + EE++++ EEE+ + GK
Sbjct: 112 SKTDSEEDDDDSEEEDNKSTSSKDGKG 138
>gnl|CDD|234065 TIGR02937, sigma70-ECF, RNA polymerase sigma factor, sigma-70
family. This model encompasses all varieties of the
sigma-70 type sigma factors including the ECF subfamily.
A number of sigma factors have names with a different
number than 70 (i.e. sigma-38), but in fact, all except
for the Sigma-54 family (TIGR02395) are included within
this family. Several PFAM models hit segments of these
sequences including Sigma-70 region 2 (pfam04542) and
Sigma-70, region 4 (pfam04545), but not always above
their respective trusted cutoffs.
Length = 158
Score = 34.2 bits (79), Expect = 0.097
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 8/67 (11%)
Query: 572 IKVWKTSDQ-DEIGSPR------IEN-IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE 623
+K+ + D+ D GS + N I+ +RR R E + EE + + EEE E
Sbjct: 37 LKLLEALDRFDPEGSFKAWLFRIARNLILDYLRRKRRLRRELDLLEELLDSDPSPEEELE 96
Query: 624 EEVQEEE 630
+E + E
Sbjct: 97 QEEEREA 103
>gnl|CDD|235246 PRK04184, PRK04184, DNA topoisomerase VI subunit B; Validated.
Length = 535
Score = 35.3 bits (82), Expect = 0.10
Identities = 31/114 (27%), Positives = 49/114 (42%), Gaps = 28/114 (24%)
Query: 571 SIKV-WKTSDQDEIGS-PRIENIIQL------------IRRGEREEEEEEEEEEEE---- 612
S KV + + ++ I P IE I+L + R +EEE +++ + E
Sbjct: 421 STKVPYTSEGKEAIADVPEIEKEIRLALQEVARKLKKYLSRKRKEEEAKKKAKTFEKYIP 480
Query: 613 ----------EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E+EE + EE ++ ++ EEEE EEEEEEE E +
Sbjct: 481 EIARKLAEILEKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTEK 534
Score = 31.8 bits (73), Expect = 1.3
Identities = 22/62 (35%), Positives = 30/62 (48%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E I I R E E+EE + EE + ++ EEE EEEEEEE E + E
Sbjct: 474 TFEKYIPEIARKLAEILEKEEPDIEEVLAKLIGKKLEEEEVEEEEEEEAVVVESAKNYTE 533
Query: 647 EE 648
++
Sbjct: 534 KD 535
>gnl|CDD|223642 COG0568, RpoD, DNA-directed RNA polymerase, sigma subunit
(sigma70/sigma32) [Transcription].
Length = 342
Score = 35.0 bits (81), Expect = 0.10
Identities = 11/68 (16%), Positives = 22/68 (32%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ + I R E E E ++ E+E+ E E++ + + E E
Sbjct: 10 AVRAYLDEIGRIPLLVREAEVELAKQLEDEQLLVELGEDLTDLKLGREPSERARRPAGRL 69
Query: 647 EEEEEEVR 654
+
Sbjct: 70 SFYIRAIE 77
>gnl|CDD|217509 pfam03353, Lin-8, Ras-mediated vulval-induction antagonist. LIN-8
is a nuclear protein, present at the sites of
transcriptional repressor complexes, which interacts
with LIN-35 Rb.Lin35 Rb is a product of the class B
synMuv gene lin-35 which silences genes required for
vulval specification through chromatin modification and
remodelling. The biological role of the interaction has
not yet been determined however predictions have been
made. The interaction shows that class A synMuv genes
control vulval induction through the transcriptional
regulation of gene expression. LIN-8 normally functions
as part of a protein complex however when the complex is
absent, other family members can partially replace LIN-8
activity.
Length = 316
Score = 35.1 bits (81), Expect = 0.10
Identities = 13/53 (24%), Positives = 26/53 (49%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E+ E ++ EE +E +E EV+E ++ +E E+ +EV+
Sbjct: 147 DGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVK 199
Score = 34.7 bits (80), Expect = 0.13
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E+ E ++ EE +E +E E EEV ++ +E E+ +E ++
Sbjct: 146 YDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQ 200
Score = 34.3 bits (79), Expect = 0.17
Identities = 17/77 (22%), Positives = 31/77 (40%), Gaps = 4/77 (5%)
Query: 573 KVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
+ W DQ+ E+ I E E ++ EE +E +E E EE ++
Sbjct: 129 EPWTGEDQE----ADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAV 184
Query: 633 EEEEEEEEEEEEEEEEE 649
+E E+ +E ++
Sbjct: 185 DEPEQSTMSRPQEVKQS 201
Score = 33.5 bits (77), Expect = 0.35
Identities = 13/54 (24%), Positives = 23/54 (42%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
G E+ E ++ EE +E +E E EE +E E+ +E ++
Sbjct: 148 GIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQS 201
Score = 33.1 bits (76), Expect = 0.37
Identities = 13/56 (23%), Positives = 24/56 (42%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E+ E ++ EE +E +E E EE + +E E+ +E ++ V
Sbjct: 147 DGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGANLAVDEPEQSTMSRPQEVKQSV 202
Score = 32.7 bits (75), Expect = 0.63
Identities = 13/51 (25%), Positives = 27/51 (52%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
R E E++E ++E++ + E+ ++ EE +E +E E EE ++
Sbjct: 127 RKEPWTGEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDD 177
Score = 32.0 bits (73), Expect = 0.91
Identities = 14/51 (27%), Positives = 29/51 (56%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
R+E E++E ++E++ + E+ E ++ EE +E +E E EE ++
Sbjct: 127 RKEPWTGEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDD 177
Score = 30.8 bits (70), Expect = 2.3
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E++E ++E+++ + E+ E ++ EE +E +E EV
Sbjct: 129 EPWTGEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEV 171
Score = 30.4 bits (69), Expect = 3.2
Identities = 13/49 (26%), Positives = 27/49 (55%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E++E ++E++ + E + E ++ EE +E +E E EE ++
Sbjct: 129 EPWTGEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDD 177
Score = 30.1 bits (68), Expect = 3.5
Identities = 14/52 (26%), Positives = 27/52 (51%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E++E ++E++ + + E+ E ++ EE +E +E E EE G
Sbjct: 129 EPWTGEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPDDYGA 180
Score = 29.3 bits (66), Expect = 7.8
Identities = 12/48 (25%), Positives = 26/48 (54%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E++E ++E++ + ++ E ++ EE +E +E E EE +
Sbjct: 129 EPWTGEDQEADDEDDIIYDGIFEDRTRESQDMEENDEVDEVEVEEVPD 176
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein. This family consists of several
NOA36 proteins which contain 29 highly conserved
cysteine residues. The function of this protein is
unknown.
Length = 314
Score = 34.9 bits (80), Expect = 0.10
Identities = 7/39 (17%), Positives = 21/39 (53%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E +++E + +EEE+ +++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 34.2 bits (78), Expect = 0.21
Identities = 8/43 (18%), Positives = 22/43 (51%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E +++E +EEE+ ++++ E+ ++ +E+ G
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDNG 313
Score = 33.4 bits (76), Expect = 0.33
Identities = 6/37 (16%), Positives = 20/37 (54%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+ +E + +EEE+ ++++ E+ ++ +E+
Sbjct: 273 SDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 33.4 bits (76), Expect = 0.36
Identities = 7/39 (17%), Positives = 20/39 (51%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E +++E + +EEE+ ++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 33.4 bits (76), Expect = 0.39
Identities = 7/39 (17%), Positives = 21/39 (53%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E +++E + +EEE ++++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 33.4 bits (76), Expect = 0.40
Identities = 6/39 (15%), Positives = 22/39 (56%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E +++E + +EEE+ ++++ ++ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 33.0 bits (75), Expect = 0.41
Identities = 7/39 (17%), Positives = 21/39 (53%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E +++E + +EEE+ +++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 33.0 bits (75), Expect = 0.42
Identities = 6/39 (15%), Positives = 20/39 (51%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E +++E + +EE ++++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 33.0 bits (75), Expect = 0.46
Identities = 7/39 (17%), Positives = 20/39 (51%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E +++E + +EEE+ + + E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 33.0 bits (75), Expect = 0.46
Identities = 7/39 (17%), Positives = 20/39 (51%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E +++E + +EEE+ ++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 33.0 bits (75), Expect = 0.50
Identities = 7/40 (17%), Positives = 21/40 (52%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
G +++E + +EEE+ ++++ E+ + +E+
Sbjct: 270 GYESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 32.2 bits (73), Expect = 0.80
Identities = 7/39 (17%), Positives = 21/39 (53%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E +++E + EEE+ ++++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 31.9 bits (72), Expect = 1.0
Identities = 5/39 (12%), Positives = 21/39 (53%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E +++E + +E ++ ++++ E+ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 31.5 bits (71), Expect = 1.5
Identities = 8/43 (18%), Positives = 21/43 (48%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E +++E +EEE+ ++++ E+ ++ +E G
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCDNG 313
Score = 31.1 bits (70), Expect = 1.8
Identities = 6/39 (15%), Positives = 20/39 (51%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E +++E + +EEE+ ++++ ++ +E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDED 309
Score = 29.9 bits (67), Expect = 4.3
Identities = 8/41 (19%), Positives = 20/41 (48%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E + E + +EEE+ ++++ E+ ++ G E+
Sbjct: 271 YESDDDEGSSSNDYDEEEDGDDDDNEDNDDTNTNHGDEDCD 311
>gnl|CDD|227509 COG5182, CUS1, Splicing factor 3b, subunit 2 [RNA processing and
modification].
Length = 429
Score = 35.3 bits (81), Expect = 0.11
Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
Query: 598 GEREEEEEEEEEEEEEEEEEE--EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
GE + E EE +EE+ E E+ EE ++ E E +E+ +V
Sbjct: 355 GELLQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFAPAAVEVAPKEDAKVTK 414
Query: 656 GGKEE 660
GK +
Sbjct: 415 RGKAK 419
Score = 35.3 bits (81), Expect = 0.11
Identities = 17/71 (23%), Positives = 29/71 (40%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ E EE +EE+ E E+ EE V + E E +E+ + + G
Sbjct: 359 QFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFAPAAVEVAPKEDAKVTKRGKA 418
Query: 659 EEISLHFYVLY 669
+ L + VL+
Sbjct: 419 KREKLLYSVLF 429
Score = 35.3 bits (81), Expect = 0.11
Identities = 14/49 (28%), Positives = 20/49 (40%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E E E + E EE +EE+ V E E+ EE ++ E
Sbjct: 351 ETAEGELLQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFAP 399
Score = 35.0 bits (80), Expect = 0.12
Identities = 15/60 (25%), Positives = 22/60 (36%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
L G E E + E EE +EE+ + E+ EE ++ E EV
Sbjct: 345 LFEVGPETAEGELLQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFAPAAVEV 404
Score = 34.6 bits (79), Expect = 0.17
Identities = 16/59 (27%), Positives = 23/59 (38%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E E + E EE +EE+ E E+ EE ++ E V KE+
Sbjct: 351 ETAEGELLQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNGGLAEFAPAAVEVAPKED 409
Score = 32.3 bits (73), Expect = 1.0
Identities = 14/53 (26%), Positives = 19/53 (35%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E E E E E + E EE +E Q E E+ EE ++
Sbjct: 340 GWHEPLFEVGPETAEGELLQFEAEEIYNDEEQYTRPVYENEDFEERVDDVSNG 392
>gnl|CDD|215544 PLN03029, PLN03029, type-a response regulator protein; Provisional.
Length = 222
Score = 34.6 bits (79), Expect = 0.11
Identities = 11/52 (21%), Positives = 33/52 (63%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++E +E++E+ EE E + E++E+ Q+ + + + +++ ++ + + EE
Sbjct: 153 QKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKAMEE 204
Score = 32.7 bits (74), Expect = 0.42
Identities = 11/55 (20%), Positives = 33/55 (60%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ ++E +E++E+ EE E + E++E+ ++ Q + + +++ ++ + + EE
Sbjct: 150 SKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKAMEE 204
Score = 32.7 bits (74), Expect = 0.47
Identities = 9/43 (20%), Positives = 31/43 (72%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ +++E +E++E+ EE E+Q E++E+ ++ + + + +++ ++
Sbjct: 151 KNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQ 193
Score = 31.2 bits (70), Expect = 1.4
Identities = 10/57 (17%), Positives = 35/57 (61%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
+ +++E +E++E+ EE E + +++E+ ++ + + + +++ ++ R +E +S
Sbjct: 151 KNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKAMEEGLS 207
Score = 31.2 bits (70), Expect = 1.5
Identities = 10/54 (18%), Positives = 33/54 (61%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ +++E +E++E+ EE E + E++E+ + + + + +++ ++ + + EE
Sbjct: 151 KNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKAMEE 204
Score = 30.0 bits (67), Expect = 3.0
Identities = 9/57 (15%), Positives = 34/57 (59%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
+ + +++E +E++E+ EE E + E++ Q ++ + + + +++ ++ + + + G
Sbjct: 149 KSKNQKQENQEKQEKLEESEIQSEKQEQPSQQPQSQPQPQQQPQQPNNNKRKAMEEG 205
>gnl|CDD|216249 pfam01025, GrpE, GrpE.
Length = 165
Score = 34.1 bits (79), Expect = 0.11
Identities = 25/55 (45%), Positives = 33/55 (60%), Gaps = 1/55 (1%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE-EEEEEEEEEEVR 654
E+EEEEE E+EEE EEE EE EEE++E ++ E E + E E EE +
Sbjct: 2 EKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAK 56
Score = 33.3 bits (77), Expect = 0.17
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
EE+EEEEE E+EEE EEE++E EEE EE ++
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDR 33
Score = 33.3 bits (77), Expect = 0.20
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
EE+EEEEE E+EEE ++EE EE EEE EE ++
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDR 33
Score = 32.6 bits (75), Expect = 0.35
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
EE+EEEEE E+E + EEE EE EEE EE ++
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDR 33
Score = 32.6 bits (75), Expect = 0.36
Identities = 20/33 (60%), Positives = 26/33 (78%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE+EEEEE+++EEE EEE EE EEE EE ++
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDR 33
Score = 32.2 bits (74), Expect = 0.46
Identities = 21/36 (58%), Positives = 26/36 (72%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE+EEEE E+EEE EEE EE EEE EE ++ +R
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLR 36
Score = 32.2 bits (74), Expect = 0.49
Identities = 22/45 (48%), Positives = 27/45 (60%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE+EEEEE E+EEE +E EE EEE EE ++ E E R
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYR 45
Score = 31.0 bits (71), Expect = 0.96
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
EE+EEEEE E+EEE E + EE EEE EE ++
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDR 33
Score = 31.0 bits (71), Expect = 1.2
Identities = 25/60 (41%), Positives = 32/60 (53%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ EEEE E+EEE EEE EE EEE EE+++ E E + E E EE + K
Sbjct: 3 KEEEEELEDEEEALEEELEELEEEIEELKDRLLRLLAEFENYRKRTEREREEAKKYAIEK 62
Score = 30.3 bits (69), Expect = 2.0
Identities = 19/33 (57%), Positives = 24/33 (72%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
EE+EEEEE E+EEE EEE + EEE EE ++
Sbjct: 1 EEKEEEEELEDEEEALEEELEELEEEIEELKDR 33
>gnl|CDD|221323 pfam11931, DUF3449, Domain of unknown function (DUF3449). This
presumed domain is functionally uncharacterized. This
domain is found in eukaryotes. This domain is typically
between 181 to 207 amino acids in length. This domain
has two conserved sequence motifs: PIP and CEICG. The
domain carries a zinc-finger domain of the C2H2-type.
Length = 187
Score = 34.2 bits (79), Expect = 0.11
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EEE Q +E E+ E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 33.4 bits (77), Expect = 0.19
Identities = 12/45 (26%), Positives = 25/45 (55%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
E+ I+ + R + EEE + +E E+ E+ +++ ++EEE
Sbjct: 18 REDTIENVERKQALTEEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 33.0 bits (76), Expect = 0.27
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
EEE + +E E+ E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 32.2 bits (74), Expect = 0.47
Identities = 9/32 (28%), Positives = 19/32 (59%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EEE +E E+ E+ +++ +++EEE +
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEEPI 64
Score = 31.8 bits (73), Expect = 0.71
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
EEE + +E E+ E+ ++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 31.5 bits (72), Expect = 0.84
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EEE + E E+ E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 31.1 bits (71), Expect = 1.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
EEE + +E E+ E +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 31.1 bits (71), Expect = 1.4
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
EEE + + E+ E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 31.1 bits (71), Expect = 1.4
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
EEE + +E E+ ++ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 31.1 bits (71), Expect = 1.4
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
EEE + +E E+ E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 30.3 bits (69), Expect = 2.2
Identities = 8/30 (26%), Positives = 18/30 (60%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
EEE + + E+ E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 30.3 bits (69), Expect = 2.2
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EEE + +E E+ E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 30.3 bits (69), Expect = 2.3
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
EEE + +E E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 30.3 bits (69), Expect = 2.4
Identities = 9/30 (30%), Positives = 19/30 (63%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
EEE + +E E+ E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 29.9 bits (68), Expect = 2.9
Identities = 8/30 (26%), Positives = 17/30 (56%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
EEE + +E E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 29.9 bits (68), Expect = 3.3
Identities = 8/30 (26%), Positives = 19/30 (63%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
EEE + +E ++ E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 29.5 bits (67), Expect = 3.8
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
EEE + +E E+ E+ ++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
Score = 28.8 bits (65), Expect = 6.6
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
EEE + +E E E+ +++ +++EEE
Sbjct: 33 EEERQASADESSEDASEDGSDDDSDDDEEE 62
>gnl|CDD|219009 pfam06404, PSK, Phytosulfokine precursor protein (PSK). This
family consists of several plant specific phytosulfokine
precursor proteins. Phytosulfokines, are active as
either a pentapeptide or a C-terminally truncated
tetrapeptide. These compounds were first isolated
because of their ability to stimulate cell division in
somatic embryo cultures of Asparagus officinalis.
Length = 74
Score = 32.0 bits (73), Expect = 0.12
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
R + E + E E + +E+E E + E EEE
Sbjct: 15 ARPLPTDTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 30.4 bits (69), Expect = 0.44
Identities = 11/38 (28%), Positives = 15/38 (39%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEE 624
R + E E + +E+E E E E EEE
Sbjct: 16 RPLPTDTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 30.0 bits (68), Expect = 0.55
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E + E E +V E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 30.0 bits (68), Expect = 0.59
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 29.3 bits (66), Expect = 1.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E + E + + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 29.3 bits (66), Expect = 1.2
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.9 bits (65), Expect = 1.7
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
E + E E + +E+ E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.9 bits (65), Expect = 1.7
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E +++ E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.9 bits (65), Expect = 1.8
Identities = 13/38 (34%), Positives = 18/38 (47%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
R + E + E E + +E+EV E E E EEE
Sbjct: 16 RPLPTDTGHESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.9 bits (65), Expect = 1.9
Identities = 10/30 (33%), Positives = 14/30 (46%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E + E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
Score = 28.5 bits (64), Expect = 2.3
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E + E E + +E+E E E E EEE
Sbjct: 24 HESSKIEAAESSKVDEDEVVSECEGEGEEE 53
>gnl|CDD|203371 pfam06005, DUF904, Protein of unknown function (DUF904). This
family consists of several bacterial and archaeal
hypothetical proteins of unknown function.
Length = 72
Score = 31.9 bits (73), Expect = 0.12
Identities = 17/49 (34%), Positives = 29/49 (59%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+I+ ++ I + E EE +EE E+ EE EE EEE ++++EE +
Sbjct: 12 KIQQAVETIALLQMEIEELKEENEQLSEENEELEEENKKLKEERNAWQS 60
Score = 26.9 bits (60), Expect = 8.8
Identities = 16/41 (39%), Positives = 23/41 (56%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ E EE +EE Q EE EE EEE ++ +EE + +R
Sbjct: 24 QMEIEELKEENEQLSEENEELEEENKKLKEERNAWQSRLRA 64
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional.
Length = 701
Score = 35.0 bits (80), Expect = 0.13
Identities = 16/53 (30%), Positives = 37/53 (69%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+ E+E +E+EE+ ++ +E+ EE +V+E +E +E ++++ ++ +E +E E
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYE 260
Score = 33.9 bits (77), Expect = 0.28
Identities = 16/59 (27%), Positives = 39/59 (66%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+I ++ + +E +E+EE+ ++ +E+ EE + EEV+E +E ++++ ++ +E +E E
Sbjct: 202 DIELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYE 260
Score = 33.1 bits (75), Expect = 0.57
Identities = 17/55 (30%), Positives = 36/55 (65%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E+E +E+EE+ ++ +E+ EE EE +E +E ++++ ++ +E +E EV+ K
Sbjct: 212 EKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYEVQNKHK 266
Score = 33.1 bits (75), Expect = 0.61
Identities = 16/51 (31%), Positives = 34/51 (66%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E+ E+E +E+EE+ + +E+ EE + EE +E +E ++++ ++V+ KE
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKE 258
Score = 32.7 bits (74), Expect = 0.69
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 15/81 (18%)
Query: 595 IRRGER-----EEEEEEEEEEEEEEEEEEEEEE----------EEEVQEEEEEEEEEEEE 639
++RG R +E++ E E +E ++ E E+ ++E +E+EE+ +
Sbjct: 165 MKRGTRITLHLKEDQMEYLEPRRLKELIKKHSEFIGYDIELMVEKTTEKEVTDEDEEDTK 224
Query: 640 EEEEEEEEEEEEEVRGGGKEE 660
+ +E+ EE + EEV+ G + +
Sbjct: 225 KADEDGEEPKVEEVKEGDEGK 245
Score = 30.0 bits (67), Expect = 4.9
Identities = 14/51 (27%), Positives = 34/51 (66%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+ E+E +E+EE+ ++ +E+ E + EE +E +E ++++ ++ +E +E
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKE 258
Score = 30.0 bits (67), Expect = 5.3
Identities = 16/58 (27%), Positives = 36/58 (62%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
IE +++ E +E+EE+ ++ +E+ EE + EE +E E ++++ ++ +E +E E
Sbjct: 203 IELMVEKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEVTKEYE 260
Score = 30.0 bits (67), Expect = 5.5
Identities = 14/48 (29%), Positives = 32/48 (66%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E+ E+E +E+EE+ ++ + EE + EE +E +E ++++ ++ +EV
Sbjct: 208 EKTTEKEVTDEDEEDTKKADEDGEEPKVEEVKEGDEGKKKKTKKVKEV 255
>gnl|CDD|236912 PRK11448, hsdR, type I restriction enzyme EcoKI subunit R;
Provisional.
Length = 1123
Score = 35.3 bits (82), Expect = 0.13
Identities = 15/82 (18%), Positives = 39/82 (47%), Gaps = 5/82 (6%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
D + + + ++ L ++ E + E+ + + E +++E E E EE+++E E
Sbjct: 138 EDPENLLHALQQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELE 197
Query: 638 EE-----EEEEEEEEEEEEEVR 654
+ E+ E +E +++ +
Sbjct: 198 AQLEQLQEKAAETSQERKQKRK 219
Score = 32.2 bits (74), Expect = 1.1
Identities = 15/73 (20%), Positives = 38/73 (52%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
Q E+ + + + +Q + + + E +++E E E EE++ + E + E+ +E+
Sbjct: 148 QQEVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKA 207
Query: 640 EEEEEEEEEEEEE 652
E +E +++ +E
Sbjct: 208 AETSQERKQKRKE 220
Score = 29.9 bits (68), Expect = 5.7
Identities = 13/70 (18%), Positives = 34/70 (48%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++ ++ E + E+ + + E +++E E EE+++E E + E+ +E+ E
Sbjct: 150 EVLTLKQQLELQAREKAQSQALAEAQQQELVALEGLAAELEEKQQELEAQLEQLQEKAAE 209
Query: 653 VRGGGKEEIS 662
K++
Sbjct: 210 TSQERKQKRK 219
>gnl|CDD|150747 pfam10107, Endonuc_Holl, Endonuclease related to archaeal Holliday
junction resolvase. This domain is found in various
predicted bacterial endonucleases which are distantly
related to archaeal Holliday junction resolvases.
Length = 153
Score = 33.5 bits (77), Expect = 0.13
Identities = 14/50 (28%), Positives = 27/50 (54%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
II+L + E+ E E+ E E + E E + +E +++EE+E ++
Sbjct: 13 IIKLQGKVEKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKEIRKD 62
Score = 32.3 bits (74), Expect = 0.41
Identities = 16/60 (26%), Positives = 29/60 (48%), Gaps = 5/60 (8%)
Query: 588 IENIIQLIR-----RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
I I+ L +G+ E+ E E+ E E + E E + EE +++EE+E ++
Sbjct: 3 ILAILSLFIKIIKLQGKVEKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKEIRKD 62
Score = 31.6 bits (72), Expect = 0.64
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+ E E+ E E + E E + EE +++EE+E+R
Sbjct: 21 EKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKEIR 60
Score = 28.5 bits (64), Expect = 7.8
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE 622
R + + R ERE + E E + EE +++EE+E
Sbjct: 23 RARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKE 58
Score = 28.5 bits (64), Expect = 8.1
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E+ E E+ E E Q E E + EE +++EE+E ++
Sbjct: 21 EKRARELFEQWRNAEREAQAMREAEAKFEEWQKKEEKEIRKD 62
>gnl|CDD|221641 pfam12569, NARP1, NMDA receptor-regulated protein 1. This domain
family is found in eukaryotes, and is approximately 40
amino acids in length. The family is found in
association with pfam07719, pfam00515. There is a single
completely conserved residue L that may be functionally
important. NARP1 is the mammalian homologue of a yeast
N-terminal acetyltransferase that regulates entry into
the G(0) phase of the cell cycle.
Length = 516
Score = 34.9 bits (81), Expect = 0.14
Identities = 15/58 (25%), Positives = 29/58 (50%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E EEEE E E ++ ++ ++ E++ E+EE E+ +++ E + G E
Sbjct: 395 EGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Score = 32.6 bits (75), Expect = 0.71
Identities = 15/59 (25%), Positives = 31/59 (52%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E EEEE E E ++ +++ + E++ E+EE E+ +++ E ++ +G E
Sbjct: 395 EGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGET 453
Score = 31.4 bits (72), Expect = 1.7
Identities = 9/46 (19%), Positives = 27/46 (58%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+R+ +R+ E++ E+EE E+ +++ E + + + E ++ + +
Sbjct: 414 LRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 30.7 bits (70), Expect = 2.9
Identities = 8/45 (17%), Positives = 27/45 (60%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
R+++ + E++ E+EE E+ +++ E ++ + + E ++ + +
Sbjct: 415 RKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 30.7 bits (70), Expect = 3.1
Identities = 6/39 (15%), Positives = 22/39 (56%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E++ E+EE E+ +++ + ++ + + E ++ + +
Sbjct: 421 AEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGETKKVDPD 459
Score = 29.5 bits (67), Expect = 6.7
Identities = 14/61 (22%), Positives = 29/61 (47%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E EEEE E E ++ +++ E++ E+EE E+ +++ E ++ G+
Sbjct: 393 LAEGEEEEGENGNLSPAERKKLRKKQRKAEKKAEKEEAEKAAAKKKAEAAAKKAKGPDGE 452
Query: 659 E 659
Sbjct: 453 T 453
>gnl|CDD|225871 COG3334, COG3334, Uncharacterized conserved protein [Function
unknown].
Length = 192
Score = 34.0 bits (78), Expect = 0.14
Identities = 10/66 (15%), Positives = 26/66 (39%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+ Q + ++ ++E E+ ++ + E + E+++ E ++
Sbjct: 47 AEKKAAAQSEIEKFCANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDL 106
Query: 646 EEEEEE 651
EEE E
Sbjct: 107 EEEREG 112
Score = 31.7 bits (72), Expect = 0.81
Identities = 12/81 (14%), Positives = 29/81 (35%), Gaps = 8/81 (9%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE--- 640
P ++ + E E+ + ++ ++E E+ ++ E
Sbjct: 32 AKPVGAEAEDAAAELAEKKAAAQSEIEKFCANIADAAADQLYALQKELLEKLKDLAEVNE 91
Query: 641 -----EEEEEEEEEEEEVRGG 656
E+++ E ++ EE R G
Sbjct: 92 RLKALEKKKAELKDLEEEREG 112
Score = 30.1 bits (68), Expect = 2.5
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 7/75 (9%)
Query: 576 KTSDQDEIGSPRIENIIQLIR--RGEREEEEEEEEEEEEEEEEE----EEEEEEEEVQEE 629
K + Q EI NI ++E E+ ++ E E E+++ E + EE
Sbjct: 50 KAAAQSEIEKFC-ANIADAAADQLYALQKELLEKLKDLAEVNERLKALEKKKAELKDLEE 108
Query: 630 EEEEEEEEEEEEEEE 644
E E ++ E+ +
Sbjct: 109 EREGILRSKQAEDGK 123
>gnl|CDD|224217 COG1298, FlhA, Flagellar biosynthesis pathway, component FlhA [Cell
motility and secretion / Intracellular trafficking and
secretion].
Length = 696
Score = 34.9 bits (81), Expect = 0.14
Identities = 22/57 (38%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF-YVLYVLSKGKIAG 678
+E Q EE+E+ EE ++EEEEEEEE ++V + I L Y L L + G
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVL--LIDPIELELGYGLIPLVDEQQGG 380
Score = 33.8 bits (78), Expect = 0.38
Identities = 16/44 (36%), Positives = 26/44 (59%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
L+ + + ++ EE+E+ EE ++EEEEEEEE + E E
Sbjct: 322 LLSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 33.0 bits (76), Expect = 0.56
Identities = 17/42 (40%), Positives = 26/42 (61%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+E++ EE+E+ EE ++EEEEEEEE V + + E E
Sbjct: 324 SKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 32.6 bits (75), Expect = 0.72
Identities = 19/44 (43%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE-VQEEEEEEEE 635
L +R E++ EE+E+ EE ++EEEEEEEE + V + E E
Sbjct: 322 LLSKRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 32.2 bits (74), Expect = 0.98
Identities = 15/39 (38%), Positives = 26/39 (66%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+E++ EE+E+ EE ++EEEEEEEE ++ + E+
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIEL 364
Score = 31.5 bits (72), Expect = 1.7
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 4/51 (7%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE-EEEVRGGGKEEISL 663
+E++ EE+E+ +E ++EEEEEEEE ++ + E E+ G I L
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELEL---GYGLIPL 373
Score = 31.1 bits (71), Expect = 2.6
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+E++ EE+E+ EE + +EEEEEEE ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 30.7 bits (70), Expect = 3.3
Identities = 15/41 (36%), Positives = 26/41 (63%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+ +E++ EE+E+ EE ++EEEEEEE ++ + E E
Sbjct: 325 KRKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 30.7 bits (70), Expect = 3.5
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+E++ EE+E+ EE ++EE +EEEE ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 30.3 bits (69), Expect = 4.5
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E++ EE+E+ EE ++E +EEEEE ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
Score = 29.9 bits (68), Expect = 5.3
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+E++ EE+E+ EE ++ +EEEEEE ++ + E E
Sbjct: 326 RKEQQAEEKEKPAEEAKKEEEEEEEESVDDVLLIDPIELE 365
>gnl|CDD|221121 pfam11489, DUF3210, Protein of unknown function (DUF3210). This is
a family of proteins conserved in yeasts. The function
is not known. The Schizosaccharomyces pombe member is
SPBC18E5.07 and the Saccharomyces cerevisiae member is
AIM21.
Length = 671
Score = 34.9 bits (80), Expect = 0.14
Identities = 22/110 (20%), Positives = 34/110 (30%), Gaps = 22/110 (20%)
Query: 570 PSIKVW-----KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEE 624
PS VW D + +P N R E E+E E + + E + E
Sbjct: 411 PSEDVWEDSPSSLQDTATVSTP--SNPPP--RASETPEQETSRSSSEVSLDPHQSELKSE 466
Query: 625 EVQEEEEEEEEEEEEEE-------------EEEEEEEEEEEVRGGGKEEI 661
+ + E ++ + EE EE + G K I
Sbjct: 467 KKKARPEVSKQRFPSRDVWEDAPESQELVTTEETPEEVKSSSPGVTKPAI 516
Score = 32.6 bits (74), Expect = 0.82
Identities = 14/64 (21%), Positives = 22/64 (34%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ E+ E + + E + V + E+ EE E E+E E
Sbjct: 337 REKSEKSRHESDPKSRENSKPASIYGSVPDLIRHTPLEDVEEYEPLFPEDESEIAVKPPT 396
Query: 659 EEIS 662
EE S
Sbjct: 397 EESS 400
Score = 30.3 bits (68), Expect = 4.5
Identities = 16/70 (22%), Positives = 23/70 (32%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
R + I + E+ EE E E+E E + EE EEE+
Sbjct: 350 KSRENSKPASIYGSVPDLIRHTPLEDVEEYEPLFPEDESEIAVKPPTEESSRRPEEEKHR 409
Query: 645 EEEEEEEEVR 654
E+ E
Sbjct: 410 FPSEDVWEDS 419
>gnl|CDD|237875 PRK14974, PRK14974, cell division protein FtsY; Provisional.
Length = 336
Score = 34.6 bits (80), Expect = 0.14
Identities = 22/32 (68%), Positives = 25/32 (78%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EE EEEEEEE E EEEEEEE+EEE++E G
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPG 48
Score = 34.2 bits (79), Expect = 0.20
Identities = 37/106 (34%), Positives = 52/106 (49%), Gaps = 28/106 (26%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEE--------------EEEVQEEEEEEEEE-------- 636
E EEEE E EEEEEEE+EEE++E E+++++ EE E E
Sbjct: 22 EEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDLLEELELELLESDVAL 81
Query: 637 ---EEEEEEEEEEEEEEEEVRGGGKEEI---SLHFYVLYVLSKGKI 676
EE E +E+ ++ RG EEI +L +L VLS G +
Sbjct: 82 EVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEVLSVGDL 127
Score = 33.4 bits (77), Expect = 0.32
Identities = 20/29 (68%), Positives = 26/29 (89%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE+++EEEEEE E EEEEEEE+EEE++E
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKE 45
Score = 33.4 bits (77), Expect = 0.40
Identities = 24/54 (44%), Positives = 38/54 (70%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E+ EE+ EEEEEEE E EEEEEEE +EE++E+ ++ + E +E++ E++
Sbjct: 13 VEKVEEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPGFFDKAKITEIKEKDIEDL 66
Score = 30.3 bits (69), Expect = 3.2
Identities = 19/28 (67%), Positives = 23/28 (82%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
EEEEEEE E EEEEEEE+EEE++ + G
Sbjct: 21 EEEEEEEAPEAEEEEEEEDEEEKKEKPG 48
Score = 29.2 bits (66), Expect = 7.8
Identities = 19/32 (59%), Positives = 23/32 (71%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
++ EEEEEEE E EEEEEEE+EEE+ G
Sbjct: 17 EEKIEEEEEEEAPEAEEEEEEEDEEEKKEKPG 48
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 34.9 bits (81), Expect = 0.14
Identities = 28/117 (23%), Positives = 49/117 (41%), Gaps = 27/117 (23%)
Query: 570 PSIKVWKTSDQDEIG---------SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEE 620
P I+V T D D G E I + ++E E ++ EE E++
Sbjct: 464 PQIEV--TFDIDANGILTVSAKDKGTGKEQKITITASSGLSDDEIERMVKDAEEYAAEDK 521
Query: 621 EEEEEVQ----------------EEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+ +E ++ +EE ++ E ++++ EE E +EE+ G KEEI
Sbjct: 522 KRKERIEAKNEAEEYVYSLEKSLKEEGDKLPEADKKKVEEAIEWLKEELEGEDKEEI 578
>gnl|CDD|221432 pfam12128, DUF3584, Protein of unknown function (DUF3584). This
protein is found in bacteria and eukaryotes. Proteins in
this family are typically between 943 to 1234 amino
acids in length. This family contains a P-loop motif
suggesting it is a nucleotide binding protein. It may be
involved in replication.
Length = 1198
Score = 35.1 bits (81), Expect = 0.15
Identities = 22/97 (22%), Positives = 40/97 (41%), Gaps = 4/97 (4%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE----EE 631
++ + IE +Q + R++ E + E EEE E E + + +
Sbjct: 406 AIREEKDRQKAAIEEDLQALESQLRQQLEAGKLEFNEEEYELELRLGRLKQRLDSATATP 465
Query: 632 EEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYVL 668
EE E+ E +E E+ +EE+E E++ L
Sbjct: 466 EELEQLEINDEALEKAQEEQEQAEANVEQLQSELRQL 502
Score = 33.1 bits (76), Expect = 0.55
Identities = 21/101 (20%), Positives = 40/101 (39%), Gaps = 12/101 (11%)
Query: 557 DNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEE------ 610
VP ++L ++ W D I+ + I + + + E+ E
Sbjct: 215 GTVPPKSRLNPQD--VEHWI---ADIQALRAIQKVAPEIEKLQEDFEQLLSLELRLQHLH 269
Query: 611 -EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E +EE EE+EE QE + ++ E++ +E +E
Sbjct: 270 GELVADEERLAEEQEERQEAKNRLRQQLRTLEDQLKEARDE 310
>gnl|CDD|221292 pfam11888, DUF3408, Protein of unknown function (DUF3408). This
family of proteins are functionally uncharacterized.
This protein is found in bacteria. Proteins in this
family are typically between 128 to 160 amino acids in
length.
Length = 128
Score = 33.1 bits (76), Expect = 0.15
Identities = 11/59 (18%), Positives = 20/59 (33%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
EI ++ ++ E E EEE+E+ ++ + EE E
Sbjct: 2 DYEIDEDALKEMMAGDVTALEPTEGNGETPTSVEEEKEKSAPAPISRKQRKASLEEYRE 60
>gnl|CDD|218055 pfam04386, SspB, Stringent starvation protein B. Escherichia coli
stringent starvation protein B (SspB), is thought to
enhance the specificity of degradation of tmRNA-tagged
proteins by the ClpXP protease. The tmRNA tag, also
known as ssrA, is an 11-aa peptide added to the C
terminus of proteins stalled during translation, targets
proteins for degradation by ClpXP and ClpAP. SspB a
cytoplasmic protein that specifically binds to residues
1-4 and 7 of the tag. Binding of SspB enhances
degradation of tagged proteins by ClpX, and masks
sequence elements important for ClpA interactions,
inhibiting degradation by ClpA. However, more recent
work has cast doubt on the importance of SspB in
wild-type cells. SspB is encoded in an operon whose
synthesis is stimulated by carbon, amino acid, and
phosphate starvation. SspB may play a special role
during nutrient stress, for example by ensuring rapid
degradation of the products of stalled translation,
without causing a global increase in degradation of all
ClpXP substrates.
Length = 153
Score = 33.3 bits (77), Expect = 0.15
Identities = 12/36 (33%), Positives = 22/36 (61%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E EE +EEEEEE+++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 33.0 bits (76), Expect = 0.25
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E EE EEEEEE+++ ++ E+E+ E ++ G
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 32.6 bits (75), Expect = 0.31
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E EE +EEEEEE+++ + E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 32.2 bits (74), Expect = 0.35
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E EE +EEEEEE+++ + E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 32.2 bits (74), Expect = 0.36
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E EE +EEEEEE+++ ++ E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 32.2 bits (74), Expect = 0.42
Identities = 12/41 (29%), Positives = 26/41 (63%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E EE +EEEEE+++ ++ E+E+ E ++ + +G ++
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSLKV 151
Score = 31.8 bits (73), Expect = 0.54
Identities = 12/36 (33%), Positives = 24/36 (66%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E EE +EEEEEE+++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 31.8 bits (73), Expect = 0.55
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E EE +EEEEEE+ ++ E+E+ E ++ + + +V
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSLKV 151
Score = 31.4 bits (72), Expect = 0.68
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E EE +EEEEEE++ ++ E+E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 31.0 bits (71), Expect = 1.1
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E EE +EEEEEE+++ ++ E+E+ + ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 30.6 bits (70), Expect = 1.2
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E EE +EEEEEE+++ ++ E ++ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 30.3 bits (69), Expect = 1.7
Identities = 11/36 (30%), Positives = 23/36 (63%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
E EE +EEEEEE+++ ++ E+E+ ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 30.3 bits (69), Expect = 1.9
Identities = 11/36 (30%), Positives = 24/36 (66%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E EE +EEEEEE+++ ++ ++E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 30.3 bits (69), Expect = 1.9
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E EE +EEEEEE+++ ++ E+ E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 30.3 bits (69), Expect = 1.9
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
E EE +EEEEEE+++ ++ E+E E ++ + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGR 146
Score = 29.1 bits (66), Expect = 3.9
Identities = 10/43 (23%), Positives = 24/43 (55%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E EE + +EEEE+++ ++ E+E+ E ++ + + +
Sbjct: 111 EPEEADEEEEEEDDDADDSPEDEDPEPKDPPKTKGRPSLKVVK 153
>gnl|CDD|201540 pfam00992, Troponin, Troponin. Troponin (Tn) contains three
subunits, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). this Pfam contains members of
the TnT subunit. Troponin is a complex of three
proteins, Ca2+ binding (TnC), inhibitory (TnI), and
tropomyosin binding (TnT). The troponin complex
regulates Ca++ induced muscle contraction. This family
includes troponin T and troponin I. Troponin I binds to
actin and troponin T binds to tropomyosin.
Length = 131
Score = 33.3 bits (77), Expect = 0.15
Identities = 19/78 (24%), Positives = 35/78 (44%), Gaps = 18/78 (23%)
Query: 599 EREEEEEEEEEE---EEEEEEEEEEEEEEEVQEEEEEEEE-----EEE----EEEEEEEE 646
E E+ ++EEE+E E E+QE ++ +EE EE+ +++
Sbjct: 17 EFEQRKKEEEKEKYLAERCPPLRLSLSRAELQELCKKLHARIDRLDEERYDIEEKVAKKD 76
Query: 647 EEEEE------EVRGGGK 658
+E E+ ++RG K
Sbjct: 77 KEIEDLKKKVNDLRGKFK 94
>gnl|CDD|240402 PTZ00399, PTZ00399, cysteinyl-tRNA-synthetase; Provisional.
Length = 651
Score = 35.0 bits (81), Expect = 0.15
Identities = 12/41 (29%), Positives = 33/41 (80%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+++EE + E+EE+E +E++ +++ +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 34.2 bits (79), Expect = 0.23
Identities = 14/58 (24%), Positives = 35/58 (60%), Gaps = 13/58 (22%)
Query: 574 VWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
VWK D++E+ + E+EE+E +E++ + +++EE++++E+++ E+
Sbjct: 544 VWKLDDKEEL-------------QREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 34.2 bits (79), Expect = 0.24
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 34.2 bits (79), Expect = 0.25
Identities = 13/40 (32%), Positives = 29/40 (72%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
++EE + E+EE+E +E++ + + QEE++++E E+ E+
Sbjct: 549 DKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.39
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.41
Identities = 12/41 (29%), Positives = 30/41 (73%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+++EE + E+EE+E +E++ +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.5 bits (77), Expect = 0.44
Identities = 12/41 (29%), Positives = 32/41 (78%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+++EE + E+EE+E ++E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 33.1 bits (76), Expect = 0.64
Identities = 12/41 (29%), Positives = 30/41 (73%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+++EE + E+EE+E + Q+ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 32.7 bits (75), Expect = 0.75
Identities = 12/41 (29%), Positives = 32/41 (78%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+++EE + E+EE+E +E++ +++++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 32.7 bits (75), Expect = 0.79
Identities = 12/42 (28%), Positives = 30/42 (71%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+++EE + E+EE+E +E++ + ++EE++++E E+ E+
Sbjct: 547 LDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 32.7 bits (75), Expect = 0.84
Identities = 11/41 (26%), Positives = 30/41 (73%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+++EE + E+EE+E +++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 32.3 bits (74), Expect = 0.88
Identities = 12/41 (29%), Positives = 30/41 (73%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+++EE + E+EE+E +E + + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 32.3 bits (74), Expect = 0.89
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+++EE + E+EE+E +E++ + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 32.3 bits (74), Expect = 1.1
Identities = 10/44 (22%), Positives = 30/44 (68%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ ++EE + E+EE+E +E++ + +++ +++++E E+ E+
Sbjct: 545 WKLDDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 31.9 bits (73), Expect = 1.3
Identities = 12/41 (29%), Positives = 31/41 (75%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+++EE + E+EE+E +E+ + + +++EE++++E E+ E+
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLEK 588
Score = 30.0 bits (68), Expect = 4.8
Identities = 10/40 (25%), Positives = 29/40 (72%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+++EE + E+E +E +E++ + +++EE++++E E++
Sbjct: 548 DDKEELQREKEEKEALKEQKRLRKLKKQEEKKKKELEKLE 587
>gnl|CDD|235378 PRK05256, PRK05256, condesin subunit E; Provisional.
Length = 238
Score = 34.2 bits (79), Expect = 0.15
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
G E ++LIR GE E ++E +E EEE+ +EE +E
Sbjct: 194 GDDPREAQLRLIRDGEAMPIENHLQQESSLNDETEEEQPDEEEEE 238
Score = 29.6 bits (67), Expect = 5.1
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ ++E +E EEE+ +EEEEE
Sbjct: 213 IENHLQQESSLNDETEEEQPDEEEEE 238
Score = 29.2 bits (66), Expect = 6.8
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEE 652
E ++E +E EEE+ +EEEEE
Sbjct: 214 ENHLQQESSLNDETEEEQPDEEEEE 238
Score = 28.8 bits (65), Expect = 8.9
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + E ++E +E EEE+ +EEEE
Sbjct: 209 EAMPIENHLQQESSLNDETEEEQPDEEEE 237
>gnl|CDD|131353 TIGR02300, FYDLN_acid, TIGR02300 family protein. Members of this
family are bacterial proteins with a conserved motif
[KR]FYDLN, sometimes flanked by a pair of CXXC motifs,
followed by a long region of low complexity sequence in
which roughly half the residues are Asp and Glu,
including multiple runs of five or more acidic residues.
The function of members of this family is unknown.
Length = 129
Score = 33.0 bits (75), Expect = 0.15
Identities = 12/56 (21%), Positives = 25/56 (44%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++E+E +E + E +E E EE +EE + ++ E+E++
Sbjct: 47 VRADDEKEAVAVKEVDPEIDEAAELVSLEEADEEVDPGAPTPAGGDDLAEDEDIAD 102
Score = 31.9 bits (72), Expect = 0.41
Identities = 14/63 (22%), Positives = 33/63 (52%), Gaps = 6/63 (9%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE------EEEEEEEEEEEEEEEE 650
R R ++E+E +E + E +E E ++E +EE + ++ E+E+ +++
Sbjct: 45 RRVRADDEKEAVAVKEVDPEIDEAAELVSLEEADEEVDPGAPTPAGGDDLAEDEDIADDD 104
Query: 651 EEV 653
++V
Sbjct: 105 DDV 107
Score = 31.1 bits (70), Expect = 0.66
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 19/79 (24%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEE----EEEEEEVQ--------EEEEEEEEEEEEE--- 640
R + E+E +E + E +E E EE +EEV ++ E+E+ ++
Sbjct: 47 VRADDEKEAVAVKEVDPEIDEAAELVSLEEADEEVDPGAPTPAGGDDLAEDEDIADDDDD 106
Query: 641 ----EEEEEEEEEEEEVRG 655
E+EE+++ ++E++ G
Sbjct: 107 VTFLEDEEDDDIDDEDIIG 125
Score = 29.2 bits (65), Expect = 3.2
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE + ++E+E V+E + E +E E EE +EE +
Sbjct: 39 EEALKSRRVRADDEKEAVAVKEVDPEIDEAAELVSLEEADEEVD 82
Score = 28.4 bits (63), Expect = 6.5
Identities = 15/50 (30%), Positives = 24/50 (48%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
GE+ EE + ++E+E +EV E +E E EE +EE +
Sbjct: 33 GEQFPPEEALKSRRVRADDEKEAVAVKEVDPEIDEAAELVSLEEADEEVD 82
>gnl|CDD|226421 COG3906, COG3906, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 105
Score = 32.5 bits (74), Expect = 0.16
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 6/57 (10%)
Query: 601 EEEEEEEEEEEE------EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE+E+ E E +E+ E + + V E +EE + EE EEE+EE
Sbjct: 49 AGSEEDEDGEIEIFAYSFTPDEDGTEGDLQLVPIETDEEWDMIEEVFNTFMEEEDEE 105
Score = 31.7 bits (72), Expect = 0.29
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 6/58 (10%)
Query: 601 EEEEEEEEEEEEE------EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE+E+ E E +E+ E + ++ E +EE + EE EEE+EE
Sbjct: 48 PAGSEEDEDGEIEIFAYSFTPDEDGTEGDLQLVPIETDEEWDMIEEVFNTFMEEEDEE 105
>gnl|CDD|225029 COG2118, COG2118, DNA-binding protein [General function prediction
only].
Length = 116
Score = 32.7 bits (75), Expect = 0.16
Identities = 13/36 (36%), Positives = 23/36 (63%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ 627
++ IRR + E + + + EE+ E +EE+ +EEE Q
Sbjct: 6 LEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEAQ 41
Score = 31.6 bits (72), Expect = 0.41
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
++EE EE + E+Q + + EE+ E +EE+ +EEE
Sbjct: 1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEA 40
Score = 30.0 bits (68), Expect = 1.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
++EE EE + E + + EE+ E +EE+ +EEE
Sbjct: 1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEA 40
Score = 29.6 bits (67), Expect = 2.1
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
++EE EE + E + + + EE+ E +EE+ +EEE
Sbjct: 1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEA 40
Score = 29.3 bits (66), Expect = 2.7
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
++EE EE + E + + +++E+ E +EE+ +EEE
Sbjct: 1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEA 40
Score = 28.9 bits (65), Expect = 3.0
Identities = 13/43 (30%), Positives = 25/43 (58%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++EE EE ++ E + + + EE+ E +EE+ +EEE +
Sbjct: 1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEAQKQ 43
Score = 28.9 bits (65), Expect = 3.5
Identities = 13/40 (32%), Positives = 22/40 (55%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++EE EE + E + + EE+ E +EE+ +EEE
Sbjct: 1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEA 40
Score = 28.9 bits (65), Expect = 3.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
++EE EE + E + Q + EE+ E +EE+ +EEE
Sbjct: 1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEA 40
Score = 28.9 bits (65), Expect = 3.6
Identities = 13/40 (32%), Positives = 23/40 (57%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++EE EE + E ++ + EE+ E +EE+ +EEE
Sbjct: 1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEA 40
Score = 28.1 bits (63), Expect = 5.5
Identities = 12/43 (27%), Positives = 25/43 (58%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++EE EE + + + + + EE+ E +EE+ +EEE + +
Sbjct: 1 MDDEELEEIRRRKLAELQRQAKLEEQREAQEEQARQEEEAQKQ 43
>gnl|CDD|147685 pfam05663, DUF809, Protein of unknown function (DUF809). This
family consists of several proteins of unknown function
Raphanus sativus (Radish) and Brassica napus (Rape).
Length = 138
Score = 33.2 bits (75), Expect = 0.16
Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 14/109 (12%)
Query: 540 FKPFVTALMNSEWQSLWDNVPNTNKLKTIRPSIKV---------W---KTSDQDEIGSPR 587
F LM W S + N N + L+T+R K+ W K + + + +
Sbjct: 27 FFLLAFLLMAHIWLSWFSN--NQHCLRTMRHLEKLKIPYEFQYGWLGVKITIKSNVPNDE 84
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+ + I +GE E +EE++E + E E +EE++E + E++ +EE++E E
Sbjct: 85 VTKKVSPIIKGEIEGKEEKKEGKGEIEGKEEKKEGKGEIEGKEEKKEVE 133
>gnl|CDD|151958 pfam11521, TFIIE-A_C-term, C-terminal general transcription factor
TFIIE alpha. TFIIE is compiled of two subunits, alpha
and beta. This family of proteins are the C terminal
domain of the alpha subunit of the protein which is the
largest subunit and contains several functional domains
which are important for basal transcription and cell
growth. The C terminal end of the protein binds directly
to the amino-terminal PH domain of p62/Tfb1 (of IIH)
which is involved in the recruitment of the general
transcription factor IIH to the transcription
preinitiation complex. P53 competes for the same binding
site as TFIIE alpha which shows their structural
similarity. Like p53, TFIIE alpha 336-439 can activate
transcription in vivo.
Length = 86
Score = 32.1 bits (73), Expect = 0.16
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E + E +++ E Q +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 31.7 bits (72), Expect = 0.19
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 31.7 bits (72), Expect = 0.22
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 31.3 bits (71), Expect = 0.25
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E + E +++ + +EEE++E++E EE E+E V G+
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDEPTVMVAGR 48
Score = 31.3 bits (71), Expect = 0.27
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E + E +++ E + V EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 31.3 bits (71), Expect = 0.28
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 30.6 bits (69), Expect = 0.53
Identities = 12/39 (30%), Positives = 23/39 (58%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + E +++ E + +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 28.6 bits (64), Expect = 2.9
Identities = 12/39 (30%), Positives = 22/39 (56%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E + E +++ E +EEE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.9 bits (62), Expect = 4.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E + E +++ E + +EE +E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.1 bits (60), Expect = 8.8
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E + E +++ E + + +E++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
Score = 27.1 bits (60), Expect = 9.7
Identities = 11/39 (28%), Positives = 22/39 (56%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E + E +++ E + +EE++E++E EE E+E
Sbjct: 2 ESDTSESDDDSPSPEPPAGQSVDEEEDDEDDEFEEVEDE 40
>gnl|CDD|129705 TIGR00618, sbcc, exonuclease SbcC. All proteins in this family for
which functions are known are part of an exonuclease
complex with sbcD homologs. This complex is involved in
the initiation of recombination to regulate the levels
of palindromic sequences in DNA. This family is based on
the phylogenomic analysis of JA Eisen (1999, Ph.D.
Thesis, Stanford University) [DNA metabolism, DNA
replication, recombination, and repair].
Length = 1042
Score = 34.9 bits (80), Expect = 0.17
Identities = 9/78 (11%), Positives = 28/78 (35%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
P ++NI ++ + E E+ E+ + + E+++Q+ ++ +E +
Sbjct: 587 PNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLT 646
Query: 646 EEEEEEEVRGGGKEEISL 663
+ +
Sbjct: 647 ALHALQLTLTQERVREHA 664
Score = 31.9 bits (72), Expect = 1.4
Identities = 12/62 (19%), Positives = 29/62 (46%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E + E ++ ++ ++ E QEE+ ++++ ++ EE +E V +E I
Sbjct: 227 ELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERI 286
Query: 662 SL 663
+
Sbjct: 287 NR 288
Score = 31.9 bits (72), Expect = 1.5
Identities = 5/59 (8%), Positives = 18/59 (30%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+ + + E++ ++ ++ +E + + +E E
Sbjct: 607 EDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKLTALHALQLTLTQERVREHAL 665
Score = 31.1 bits (70), Expect = 2.2
Identities = 9/49 (18%), Positives = 27/49 (55%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+E + E ++ ++ + ++ E +EE+ ++++ ++ EE+R
Sbjct: 225 EKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELR 273
Score = 31.1 bits (70), Expect = 2.4
Identities = 11/84 (13%), Positives = 31/84 (36%), Gaps = 1/84 (1%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEE-EEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
D + R++ Q + E EE+ + E ++ +E+ +E Q + +
Sbjct: 520 IDNPGPLTRRMQRGEQTYAQLETSEEDVYHQLTSERKQRASLKEQMQEIQQSFSILTQCD 579
Query: 637 EEEEEEEEEEEEEEEEVRGGGKEE 660
+E+ + ++ ++
Sbjct: 580 NRSKEDIPNLQNITVRLQDLTEKL 603
Score = 30.7 bits (69), Expect = 3.3
Identities = 11/53 (20%), Positives = 28/53 (52%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
ER++ E+E + E ++ ++ Q+ E +EE+ ++++ ++ EE
Sbjct: 219 ERKQVLEKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEE 271
Score = 30.7 bits (69), Expect = 3.7
Identities = 9/60 (15%), Positives = 24/60 (40%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
I N+ + R + E+ E E+ E+ + + Q+ ++ ++ +E +
Sbjct: 586 IPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQDVRLHLQQCSQELALKL 645
Score = 30.3 bits (68), Expect = 3.9
Identities = 12/55 (21%), Positives = 26/55 (47%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
RE ++ ++ ++ E +EE+ + Q+ ++ EE +E EE +E
Sbjct: 232 REALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQERI 286
Score = 30.3 bits (68), Expect = 4.2
Identities = 8/55 (14%), Positives = 26/55 (47%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E+E + E ++ ++ ++ E +E+ ++++ ++ EE +E +
Sbjct: 225 EKELKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVL 279
Score = 30.3 bits (68), Expect = 4.8
Identities = 9/56 (16%), Positives = 25/56 (44%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E ++ ++ ++ E +EE ++++ ++ EE +E EE +
Sbjct: 228 LKHLREALQQTQQSHAYLTQKREAQEEQLKKQQLLKQLRARIEELRAQEAVLEETQ 283
Score = 29.9 bits (67), Expect = 5.7
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 3/79 (3%)
Query: 575 WKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEE---EEEEEEEEVQEEEE 631
+ E E + ++ G E + EE + E E+ +E
Sbjct: 754 TVLKARTEAHFNNNEEVTAALQTGAELSHLAAEIQFFNRLREEDTHLLKTLEAEIGQEIP 813
Query: 632 EEEEEEEEEEEEEEEEEEE 650
+E+ + E +EEE+
Sbjct: 814 SDEDILNLQCETLVQEEEQ 832
Score = 29.6 bits (66), Expect = 6.6
Identities = 10/72 (13%), Positives = 24/72 (33%), Gaps = 3/72 (4%)
Query: 593 QLIRRGEREEEEEEEEEE---EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
Q +R ++ +E + + +E E +E + ++ +
Sbjct: 628 QDVRLHLQQCSQELALKLTALHALQLTLTQERVREHALSIRVLPKELLASRQLALQKMQS 687
Query: 650 EEEVRGGGKEEI 661
E+E KE +
Sbjct: 688 EKEQLTYWKEML 699
Score = 29.6 bits (66), Expect = 8.2
Identities = 11/85 (12%), Positives = 29/85 (34%), Gaps = 14/85 (16%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEE-------------EEEEEEEEEVQEEEEEEEEEEEE 639
QL ++ +E+ +E ++ + +Q+ E+ E E+
Sbjct: 550 QLTSERKQRASLKEQMQEIQQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDM 609
Query: 640 EEEEEEEEEEEEEVRGGGKEEISLH 664
E+ + + +++ LH
Sbjct: 610 LACEQHALLRKLQPE-QDLQDVRLH 633
Score = 29.2 bits (65), Expect = 8.6
Identities = 11/90 (12%), Positives = 31/90 (34%), Gaps = 5/90 (5%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
Q + +N + + ++ E+ E E+ E+ + + E++ +
Sbjct: 569 QQSFSILTQCDNRSKEDIPNLQNITVRLQDLTEKLSEAEDMLACEQHALLRKLQPEQDLQ 628
Query: 639 EEEEEEEEEEEEEEVRGGGKEEISLHFYVL 668
+ ++ +E + +LH L
Sbjct: 629 DVRLHLQQCSQELA-----LKLTALHALQL 653
>gnl|CDD|180700 PRK06800, fliH, flagellar assembly protein H; Validated.
Length = 228
Score = 34.1 bits (78), Expect = 0.17
Identities = 15/61 (24%), Positives = 34/61 (55%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E EEE +++ EE +++ +E+ + +E+++ E E ++ + E+ +E +E
Sbjct: 29 EVEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKE 88
Query: 661 I 661
I
Sbjct: 89 I 89
Score = 30.2 bits (68), Expect = 2.6
Identities = 9/55 (16%), Positives = 32/55 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+++ EE +++ +E + +E+++++ E ++ + E+ +E +++ +E E
Sbjct: 37 QKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEA 91
Score = 30.2 bits (68), Expect = 2.7
Identities = 11/52 (21%), Positives = 31/52 (59%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+E + +E+++ E E ++ + E+ QE +++ +E E ++ ++E++E
Sbjct: 51 HKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEIEAARQQFQKEQQE 102
Score = 30.2 bits (68), Expect = 2.8
Identities = 13/53 (24%), Positives = 29/53 (54%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
E E EEE +++ EE+ +++ +E + +E+++ E E + +E+ H
Sbjct: 29 EVEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEH 81
Score = 29.8 bits (67), Expect = 3.4
Identities = 12/60 (20%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE-----EEEEEEEEEEEEEEEEV 653
EEE +++ EE +++ +E ++++E+++ E E + E+ +E +++ +E+
Sbjct: 30 VEVEEEIQKDHEELLAQQKSLHKELNQLRQEQQKLERERQQLLADREQFQEHVQQQMKEI 89
>gnl|CDD|100108 cd04411, Ribosomal_P1_P2_L12p, Ribosomal protein P1, P2, and L12p.
Ribosomal proteins P1 and P2 are the eukaryotic proteins
that are functionally equivalent to bacterial L7/L12.
L12p is the archaeal homolog. Unlike other ribosomal
proteins, the archaeal L12p and eukaryotic P1 and P2 do
not share sequence similarity with their bacterial
counterparts. They are part of the ribosomal stalk
(called the L7/L12 stalk in bacteria), along with 28S
rRNA and the proteins L11 and P0 in eukaryotes (23S
rRNA, L11, and L10e in archaea). In bacterial ribosomes,
L7/L12 homodimers bind the extended C-terminal helix of
L10 to anchor the L7/L12 molecules to the ribosome.
Eukaryotic P1/P2 heterodimers and archaeal L12p
homodimers are believed to bind the L10 equivalent
proteins, eukaryotic P0 and archaeal L10e, in a similar
fashion. P1 and P2 (L12p, L7/L12) are the only proteins
in the ribosome to occur as multimers, always appearing
as sets of dimers. Recent data indicate that most
archaeal species contain six copies of L12p (three
homodimers), while eukaryotes have two copies each of P1
and P2 (two heterodimers). Bacteria may have four or six
copies (two or three homodimers), depending on the
species. As in bacteria, the stalk is crucial for
binding of initiation, elongation, and release factors
in eukaryotes and archaea.
Length = 105
Score = 32.2 bits (73), Expect = 0.18
Identities = 14/25 (56%), Positives = 17/25 (68%)
Query: 633 EEEEEEEEEEEEEEEEEEEEVRGGG 657
E E+ EE +EEEEEEE+E G G
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDFGFG 103
Score = 32.2 bits (73), Expect = 0.21
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEE 623
E E+ EE +EEEEEEE+E+
Sbjct: 75 AAATAEPAEKAEEAKEEEEEEEDEDF 100
Score = 31.8 bits (72), Expect = 0.25
Identities = 12/24 (50%), Positives = 16/24 (66%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEE 650
E E+ EE +EEEEEEE+E+
Sbjct: 77 ATAEPAEKAEEAKEEEEEEEDEDF 100
Score = 31.8 bits (72), Expect = 0.30
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEE 624
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 31.8 bits (72), Expect = 0.30
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEE 625
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 31.8 bits (72), Expect = 0.30
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 630 EEEEEEEEEEEEEEEEEEEEEE 651
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 31.8 bits (72), Expect = 0.30
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 631 EEEEEEEEEEEEEEEEEEEEEE 652
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 30.7 bits (69), Expect = 0.64
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEE 644
E ++ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 30.3 bits (68), Expect = 0.87
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEE 645
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 30.3 bits (68), Expect = 0.88
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEE 643
E + EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 30.3 bits (68), Expect = 1.00
Identities = 12/22 (54%), Positives = 15/22 (68%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEE 642
E E EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.9 bits (67), Expect = 1.3
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEE 640
E E+ + +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.5 bits (66), Expect = 1.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEE 633
E E+ EE +EEE +EE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.5 bits (66), Expect = 1.7
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEE 638
E E+ EE +EEEEEEE+E+
Sbjct: 79 AEPAEKAEEAKEEEEEEEDEDF 100
Score = 29.2 bits (65), Expect = 2.7
Identities = 15/52 (28%), Positives = 25/52 (48%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
NI ++I +G+ + E E+ +E +EEEEEEE+E+
Sbjct: 49 NIDEVISKGKELMSSQAAAAAAPAATAAATAEPAEKAEEAKEEEEEEEDEDF 100
>gnl|CDD|205692 pfam13514, AAA_27, AAA domain. This domain is found in a number of
double-strand DNA break proteins. This domain contains a
P-loop motif.
Length = 1118
Score = 34.7 bits (80), Expect = 0.18
Identities = 24/96 (25%), Positives = 37/96 (38%), Gaps = 1/96 (1%)
Query: 564 KLKTIRPSIKVWKTSDQDEIGSPRIENI-IQLIRRGEREEEEEEEEEEEEEEEEEEEEEE 622
+ TI + + SD RI + L+R G E E + +E
Sbjct: 846 RCTTIEELLAAVERSDTYRELRKRIAALERTLVRAGGGLSLEALVAEAAALDPDELPARL 905
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
EE ++ EE EEE E +E ++E + GG
Sbjct: 906 EELARDIEELEEELNELAQEVGAAKQELARMDGGST 941
Score = 29.3 bits (66), Expect = 8.4
Identities = 19/84 (22%), Positives = 29/84 (34%), Gaps = 10/84 (11%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEE----------EEEEEEEEEEEVQEEEEEEEEEE 637
IE ++ + R + E + E E E + E EE
Sbjct: 850 IEELLAAVERSDTYRELRKRIAALERTLVRAGGGLSLEALVAEAAALDPDELPARLEELA 909
Query: 638 EEEEEEEEEEEEEEEVRGGGKEEI 661
+ EE EEE E + G K+E+
Sbjct: 910 RDIEELEEELNELAQEVGAAKQEL 933
Score = 29.3 bits (66), Expect = 8.5
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 8/77 (10%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE-------EEEEEEEEEEVRGGGK 658
EE + EE EEE E+ +E ++E + E E E ++R +
Sbjct: 902 PARLEELARDIEELEEELNELAQEVGAAKQELARMDGGSTAAELEAERESLLAQLRDLAE 961
Query: 659 EEISLHFYVLYVLSKGK 675
+ L +L K
Sbjct: 962 RYLELA-LASRLLRKAI 977
>gnl|CDD|189476 pfam00261, Tropomyosin, Tropomyosin.
Length = 237
Score = 34.1 bits (79), Expect = 0.18
Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 14/70 (20%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQ---------EEEEEEEEE-----EEEEEEEE 644
++ EE EE +E+ EE E+ E+ E EV EE+ E EE E+ EE E
Sbjct: 11 DKAEERLEEAQEKLEEAEKRAEKAEAEVASLNRRIQLLEEDLERSEERLATALEKLEEAE 70
Query: 645 EEEEEEEEVR 654
+ +E E R
Sbjct: 71 KAADESERGR 80
Score = 33.4 bits (77), Expect = 0.28
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 20/76 (26%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE-----------EEEEEEEEE------ 642
++ EEE ++ EE EE +E+ EE E+ E+ E E EE+ E EE
Sbjct: 4 KQLEEELDKAEERLEEAQEKLEEAEKRAEKAEAEVASLNRRIQLLEEDLERSEERLATAL 63
Query: 643 ---EEEEEEEEEEVRG 655
EE E+ +E RG
Sbjct: 64 EKLEEAEKAADESERG 79
Score = 33.0 bits (76), Expect = 0.41
Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 14/90 (15%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE---EEVQE---- 628
K +D+ E G +EN R +++E+ E+ E + +E +E EE + EEV
Sbjct: 71 KAADESERGRKVLEN------RSLKDDEKMEQLEAQLKEAKEIAEEADRKYEEVARKLVV 124
Query: 629 -EEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E + E EE E E + E EEE++ G
Sbjct: 125 VEGDLERAEERAEAAESKIVELEEELKVVG 154
Score = 30.3 bits (69), Expect = 3.2
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 8/54 (14%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEE--------EEEEEEEEEEEEEEEEEEEEVR 654
E + E EE E E ++ E EEE + E EE+ + E+ EE++R
Sbjct: 126 EGDLERAEERAEAAESKIVELEEELKVVGNNLKSLEVSEEKASQREDSYEEKIR 179
Score = 29.5 bits (67), Expect = 5.1
Identities = 17/52 (32%), Positives = 23/52 (44%), Gaps = 9/52 (17%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEE---------EEEVQEEEEEEEEEEEEEE 641
E + E EE E E + E EEE EV EE+ + E+ EE+
Sbjct: 126 EGDLERAEERAEAAESKIVELEEELKVVGNNLKSLEVSEEKASQREDSYEEK 177
>gnl|CDD|185582 PTZ00373, PTZ00373, 60S Acidic ribosomal protein P2; Provisional.
Length = 112
Score = 32.6 bits (74), Expect = 0.18
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEE 645
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 31.0 bits (70), Expect = 0.69
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEV 626
+ E ++EE++EEEEEEE+++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDDL 106
Score = 31.0 bits (70), Expect = 0.69
Identities = 10/25 (40%), Positives = 18/25 (72%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEV 653
+ E ++EE++EEEEEEE+++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDDL 106
Score = 30.6 bits (69), Expect = 0.78
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEE 624
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 30.6 bits (69), Expect = 0.78
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEE 651
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 30.6 bits (69), Expect = 0.83
Identities = 11/21 (52%), Positives = 18/21 (85%)
Query: 598 GEREEEEEEEEEEEEEEEEEE 618
G + E ++EE++EEEEEEE++
Sbjct: 85 GAKAEAKKEEKKEEEEEEEDD 105
Score = 30.3 bits (68), Expect = 0.98
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEE 650
+ E ++EE++EEEEEEE++
Sbjct: 81 AATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 30.3 bits (68), Expect = 1.1
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ E ++EE++EEEEEEE+ G
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDDLG 107
Score = 30.3 bits (68), Expect = 1.1
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEE 648
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 29.9 bits (67), Expect = 1.3
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEE 622
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 29.5 bits (66), Expect = 1.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEE 640
+ E +EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 29.1 bits (65), Expect = 3.0
Identities = 9/24 (37%), Positives = 17/24 (70%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEE 643
+ + ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.7 bits (64), Expect = 3.4
Identities = 10/24 (41%), Positives = 17/24 (70%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEE 641
+ E ++EE++EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.3 bits (63), Expect = 4.8
Identities = 10/24 (41%), Positives = 16/24 (66%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEE 636
+ E ++EE +EEEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.0 bits (62), Expect = 6.0
Identities = 9/24 (37%), Positives = 16/24 (66%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEE 635
+ E ++EE+ +EEEEEE++
Sbjct: 82 ATAGAKAEAKKEEKKEEEEEEEDD 105
Score = 28.0 bits (62), Expect = 6.0
Identities = 10/19 (52%), Positives = 17/19 (89%)
Query: 597 RGEREEEEEEEEEEEEEEE 615
+ E ++EE++EEEEEEE++
Sbjct: 87 KAEAKKEEKKEEEEEEEDD 105
>gnl|CDD|148072 pfam06244, DUF1014, Protein of unknown function (DUF1014). This
family consists of several hypothetical eukaryotic
proteins of unknown function.
Length = 122
Score = 32.8 bits (75), Expect = 0.19
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
Q+ R E+E+ + E EE+ ++ E EE + EE E
Sbjct: 4 QIEERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVE 50
Score = 32.0 bits (73), Expect = 0.29
Identities = 14/48 (29%), Positives = 19/48 (39%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EE E+E+ + E EE+ + E EE EE E R
Sbjct: 6 EERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVEART 53
Score = 31.2 bits (71), Expect = 0.57
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
R + EE E+E+ + E EE+ ++ +E EE EE E
Sbjct: 2 RAQIEERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVE 50
Score = 30.9 bits (70), Expect = 0.90
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE E+E+ + E EE+ ++ E EE EE E
Sbjct: 6 EERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVE 50
Score = 30.5 bits (69), Expect = 1.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
R + EE E+E+ + E EE+ ++ EV EE EE E
Sbjct: 2 RAQIEERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVE 50
Score = 30.1 bits (68), Expect = 1.3
Identities = 13/66 (19%), Positives = 25/66 (37%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E+E+ + E EE+ ++ E ++E EE E ++ V
Sbjct: 6 EERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVEARTIDDAIAVLSVNA 65
Query: 659 EEISLH 664
++ H
Sbjct: 66 LDVDRH 71
Score = 28.2 bits (63), Expect = 5.7
Identities = 11/46 (23%), Positives = 20/46 (43%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
I + + + +R+ E EE+ ++ E EE + EE E
Sbjct: 5 IEERLEKEQRKLEAPEEKSKKNAAREVPLEENLNVNRNRLEEGTVE 50
>gnl|CDD|235551 PRK05667, dnaG, DNA primase; Validated.
Length = 580
Score = 34.4 bits (80), Expect = 0.19
Identities = 20/105 (19%), Positives = 36/105 (34%), Gaps = 9/105 (8%)
Query: 550 SEWQSLWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEE 609
+++L + + L T ++ +D + L E EE+ E
Sbjct: 473 PLFRALLEAILAQPGLTTGSQLLEHL----RDAGLEELAALLESLAVWEEISEEDIAALE 528
Query: 610 EEEEEEEE-----EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+E ++ E EE EE+ +E E EE E +
Sbjct: 529 KELKDALEKLRDQLLEERLEELIAKERLLEGHGLSSEERLELLQL 573
>gnl|CDD|179798 PRK04239, PRK04239, hypothetical protein; Provisional.
Length = 110
Score = 32.5 bits (75), Expect = 0.19
Identities = 12/33 (36%), Positives = 24/33 (72%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ 627
IRR + EE +++ +E+++ +EE+EE + + E Q
Sbjct: 6 IRRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQ 38
Score = 29.8 bits (68), Expect = 1.2
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE EE + EE+Q++ +E+++ +EE+EE + + E +
Sbjct: 1 EELEEIRRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQ 38
Score = 27.9 bits (63), Expect = 5.7
Identities = 12/38 (31%), Positives = 24/38 (63%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
EE EE + EE ++ +E+++ +EE+EE + + E +
Sbjct: 1 EELEEIRRRKLEELQKQAQEQQQAQEEQEEAQAQAEAQ 38
>gnl|CDD|130844 TIGR01784, T_den_put_tspse, conserved hypothetical protein
(putative transposase or invertase). Several lines of
evidence suggest that members of this family (loaded as
a fragment mode model to find part-length matches) are
associated with transposition, inversion, or
recombination. Members are found in small numbers of
genomes, but in large copy numbers in many of those
species, including over 30 full length and fragmentary
members in Treponema denticola. The strongest
similarities are usually within rather than between
species. PSI-BLAST shows similarity to proteins
designated as possible transposases, DNA invertases
(resolvases), and recombinases. In the oral pathogenic
spirochete Treponema denticola, full-length members are
often found near transporters or other membrane
proteins. This family includes members of the putative
transposase family pfam04754.
Length = 270
Score = 33.9 bits (78), Expect = 0.19
Identities = 18/99 (18%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Query: 566 KTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEE-EEEEEEEEEEEE 624
+ K+ D+ + ++ + L++ + + + ++ EEE +
Sbjct: 144 LHLLELPKLKAIIDERLLD--VLDRWLLLLKGKDNQSVNLIFLQIPFIQKAEEEIKTLLL 201
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
+E E E+ E+ + EEE +EE G E L
Sbjct: 202 SSKELELYEQREKYMTDAISAEEEGKEEGIEEGILEAKL 240
Score = 32.0 bits (73), Expect = 0.78
Identities = 16/54 (29%), Positives = 25/54 (46%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ EEE + +E E E+ E+ + EEE +EE EE E + E
Sbjct: 190 QKAEEEIKTLLLSSKELELYEQREKYMTDAISAEEEGKEEGIEEGILEAKLETA 243
Score = 31.2 bits (71), Expect = 1.6
Identities = 21/97 (21%), Positives = 39/97 (40%)
Query: 558 NVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEE 617
+P + R + + + + N+I L ++ EEE + +E E
Sbjct: 148 ELPKLKAIIDERLLDVLDRWLLLLKGKDNQSVNLIFLQIPFIQKAEEEIKTLLLSSKELE 207
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+ E+ + + EEE +EE EE E + E +
Sbjct: 208 LYEQREKYMTDAISAEEEGKEEGIEEGILEAKLETAK 244
>gnl|CDD|235672 PRK06012, flhA, flagellar biosynthesis protein FlhA; Validated.
Length = 697
Score = 34.7 bits (81), Expect = 0.19
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
+R+ E++ E EE EEEE E EEE ++V +
Sbjct: 325 RLRKREKKAAELAAEEAEEEEAAEPEEESWDDVLPVDP 362
Score = 33.6 bits (78), Expect = 0.40
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
R + E++ E EE EEEE E EEE +
Sbjct: 324 YRLRKREKKAAELAAEEAEEEEAAEPEEESWDD 356
Score = 31.2 bits (72), Expect = 1.9
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ E++ E EE EEEE E EEE
Sbjct: 328 KREKKAAELAAEEAEEEEAAEPEEESW 354
>gnl|CDD|217943 pfam04180, LTV, Low temperature viability protein. The
low-temperature viability protein LTV1 is involved in
ribosome biogenesis 40S subunit production.
Length = 426
Score = 34.6 bits (79), Expect = 0.19
Identities = 18/81 (22%), Positives = 35/81 (43%), Gaps = 6/81 (7%)
Query: 578 SDQDEIGS------PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
S D I PR+ +++ + +EE EE++ EE EE ++EE + +
Sbjct: 143 SVPDAIAGFQPDMDPRLREVLEALEDEAYVRNDEESEEDDGEEWEEMDDEEGSDDRSSAG 202
Query: 632 EEEEEEEEEEEEEEEEEEEEE 652
+E E+ +E ++
Sbjct: 203 FLDEFEDLSAPGSPQEAMKKH 223
Score = 31.5 bits (71), Expect = 1.5
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E+E +EE EE++ EE EE+ +EE ++ +E E+ + K+
Sbjct: 164 EALEDEAYVRNDEESEEDDGEEWEEMDDEEGSDDRSSAGFLDEFEDLSAPGSPQEAMKKH 223
Score = 30.7 bits (69), Expect = 2.6
Identities = 25/79 (31%), Positives = 34/79 (43%), Gaps = 13/79 (16%)
Query: 599 EREEEEEEEEEEEEEEE------------EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E EE++ EE EE ++EE E E+ QE ++ EEE E E
Sbjct: 177 ESEEDDGEEWEEMDDEEGSDDRSSAGFLDEFEDLSAPGSPQEAMKKHLFVEEETESRNTE 236
Query: 647 EEEEEEVRGGGKEEISLHF 665
E EV E+ +LHF
Sbjct: 237 YSETSEVM-RRNEDWTLHF 254
>gnl|CDD|227780 COG5493, COG5493, Uncharacterized conserved protein containing a
coiled-coil domain [Function unknown].
Length = 231
Score = 34.1 bits (78), Expect = 0.19
Identities = 18/85 (21%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 570 PSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
P I V + + EI + + + +++ EE +E E+ ++E +E+ E Q+
Sbjct: 15 PEILVDVLTQRPEILYEVLAKLTPWQQLATKQDVEELRKETEQRQKELADEKLEVRKQKA 74
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEVR 654
+E+ + + +EEE +E+++
Sbjct: 75 TKEDLK-LLQRFQEEEFRATKEDIK 98
Score = 29.8 bits (67), Expect = 3.6
Identities = 13/54 (24%), Positives = 32/54 (59%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+++ EE +E E+ ++E+ +E+ E +++ +E+ + + +EE KE+I
Sbjct: 44 TKQDVEELRKETEQRQKELADEKLEVRKQKATKEDLKLLQRFQEEEFRATKEDI 97
>gnl|CDD|220818 pfam10595, UPF0564, Uncharacterized protein family UPF0564. This
family of proteins has no known function. However, one
of the members is annotated as an EF-hand family
protein.
Length = 349
Score = 34.4 bits (79), Expect = 0.19
Identities = 19/67 (28%), Positives = 41/67 (61%), Gaps = 12/67 (17%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEE------------EEVQEEEEEEEEEEEEEEEE 643
R ER+E+E +E++E++E E+ +++++E + Q+ +EE +E+ + +E
Sbjct: 278 LRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQEERKEQLAKLRKE 337
Query: 644 EEEEEEE 650
E+E E+E
Sbjct: 338 EKEREKE 344
Score = 30.9 bits (70), Expect = 2.0
Identities = 19/84 (22%), Positives = 43/84 (51%), Gaps = 17/84 (20%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE-----------------VQE 628
P + + + R E +E+E +E++E++E E+ +++++ +
Sbjct: 265 PPSTKKWESLVKFLRTERKEKEAKEQQEKKELEQRKKKKKEMAPKVKQRFEANDPAQKLQ 324
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEE 652
EE +E+ + +EE+E E+E E+E
Sbjct: 325 EERKEQLAKLRKEEKEREKEYEQE 348
Score = 29.4 bits (66), Expect = 6.2
Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 31/98 (31%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEE----------------------EEEEEEEEEV 626
+ + IR+ + EEE + E++EEE E E+ EE EEV
Sbjct: 18 KREKKSIRQSKLEEELNKLEKKEEEAECKKKFKANPVPASVKLPLYEEIMEQNEERREEV 77
Query: 627 QEEEEEEE---------EEEEEEEEEEEEEEEEEEVRG 655
+E+ + E EE+++ +
Sbjct: 78 REKSKAILLSSQKPFSFYEREEQKKAILPRKLRSSTSE 115
>gnl|CDD|236081 PRK07735, PRK07735, NADH dehydrogenase subunit C; Validated.
Length = 430
Score = 34.6 bits (79), Expect = 0.20
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ + +RE EE EEE+ + + + + +++ E EE EEEEE ++E
Sbjct: 108 LAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKE 163
Score = 33.8 bits (77), Expect = 0.28
Identities = 15/55 (27%), Positives = 26/55 (47%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ E EE EEE+ + + + +++ E EE EEEEE ++E
Sbjct: 109 AKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKE 163
Score = 33.8 bits (77), Expect = 0.33
Identities = 12/53 (22%), Positives = 28/53 (52%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ E++ E+ ++E +EE + V + E + EEE E+E+ + +++
Sbjct: 2 DPEKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDM 54
Score = 33.4 bits (76), Expect = 0.42
Identities = 15/54 (27%), Positives = 28/54 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++ E EE EEE+ + + + + +++ E EE EEEEE ++E
Sbjct: 110 KQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKE 163
Score = 33.0 bits (75), Expect = 0.50
Identities = 15/59 (25%), Positives = 28/59 (47%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+++ E EE EEE+ + + + +++ E EE EEEEE ++ + K
Sbjct: 110 KQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKEKAKAK 168
Score = 32.3 bits (73), Expect = 0.84
Identities = 14/53 (26%), Positives = 26/53 (49%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++ E EE EEE+ + + + + +++ E EE EEEEE +
Sbjct: 109 AKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETD 161
Score = 31.5 bits (71), Expect = 1.7
Identities = 15/56 (26%), Positives = 27/56 (48%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
L ++ EE EEE+ + + + + +++ E EE EEEEE ++E
Sbjct: 108 LAKQKREGTEEVTEEEKAAAKAKAAAAAKAKAAALAKQKREGTEEVTEEEEETDKE 163
Score = 30.7 bits (69), Expect = 2.5
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ ++E +EE + + E EEE E+E+ + ++ EE
Sbjct: 9 DLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEE 58
Score = 30.7 bits (69), Expect = 3.0
Identities = 12/51 (23%), Positives = 23/51 (45%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E ++E +EE + + E + EEE E+E+ + ++ EE
Sbjct: 8 EDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEE 58
Score = 30.3 bits (68), Expect = 3.5
Identities = 11/53 (20%), Positives = 25/53 (47%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+ ++E +EE + + + + EEE E+E+ + ++ EE +
Sbjct: 8 EDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAK 60
Score = 30.3 bits (68), Expect = 4.0
Identities = 14/59 (23%), Positives = 30/59 (50%), Gaps = 3/59 (5%)
Query: 599 EREEEEEEEEEEEEEEEEEEEE---EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E++ E+ ++E +EE + + E+ + EEE E+E+ + ++ EE + R
Sbjct: 4 EKDLEDLKKEAARRAKEEARKRLVAKHGAEISKLEEENREKEKALPKNDDMTIEEAKRR 62
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase
subunit E2; Reviewed.
Length = 411
Score = 34.4 bits (80), Expect = 0.20
Identities = 8/49 (16%), Positives = 8/49 (16%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAA 125
Score = 34.4 bits (80), Expect = 0.20
Identities = 8/49 (16%), Positives = 8/49 (16%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAA 125
Score = 34.4 bits (80), Expect = 0.20
Identities = 8/50 (16%), Positives = 8/50 (16%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAK 126
Score = 34.4 bits (80), Expect = 0.22
Identities = 8/48 (16%), Positives = 8/48 (16%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124
Score = 34.0 bits (79), Expect = 0.23
Identities = 8/48 (16%), Positives = 8/48 (16%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124
Score = 34.0 bits (79), Expect = 0.27
Identities = 7/50 (14%), Positives = 8/50 (16%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EEE E E E E +
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAK 126
Score = 33.6 bits (78), Expect = 0.37
Identities = 8/50 (16%), Positives = 9/50 (18%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
EEE E E E E E +
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAK 126
Score = 32.8 bits (76), Expect = 0.57
Identities = 7/50 (14%), Positives = 8/50 (16%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EEE E E E E +
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAAAK 126
Score = 32.8 bits (76), Expect = 0.64
Identities = 7/48 (14%), Positives = 7/48 (14%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
EE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124
Score = 32.5 bits (75), Expect = 0.73
Identities = 8/48 (16%), Positives = 8/48 (16%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EEE E E E E E
Sbjct: 77 EEEGEAEAAAAAEAAPEAPAPEPAPAAAAAAAAAPAAAAAPAAPAAAA 124
>gnl|CDD|215094 PLN00188, PLN00188, enhanced disease resistance protein (EDR2);
Provisional.
Length = 719
Score = 34.4 bits (79), Expect = 0.20
Identities = 18/84 (21%), Positives = 39/84 (46%), Gaps = 1/84 (1%)
Query: 578 SDQDEIGS-PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
S DE G+ PRI ++ + ++ ++ +E ++ + +E+ +++EE
Sbjct: 391 SQTDERGAPPRIPVMVNMASASVSSKKNQKPQESSPSLDQTNAASRNSVMMDEDSDDDEE 450
Query: 637 EEEEEEEEEEEEEEEEVRGGGKEE 660
+ E E+E E + E + EE
Sbjct: 451 FQIPESEQEPETTKNETKDTAMEE 474
Score = 31.7 bits (72), Expect = 1.3
Identities = 11/39 (28%), Positives = 26/39 (66%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+E+ +++EE ++ E E+E E + E ++ EEE ++++
Sbjct: 442 DEDSDDDEEFQIPESEQEPETTKNETKDTAMEEEPQDKI 480
>gnl|CDD|234029 TIGR02830, spore_III_AG, stage III sporulation protein AG. CC A
comparative genome analysis of all sequenced genomes of
shows a number of proteins conserved strictly among the
endospore-forming subset of the Firmicutes. This
protein, a member of this panel, is found in a spore
formation operon and is designated stage III sporulation
protein AG [Cellular processes, Sporulation and
germination].
Length = 186
Score = 33.5 bits (77), Expect = 0.21
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
E+ EE + E+ E E E ++E+E + E++ E E +E E++ G G + ++
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKEILEKIEGVGDVTVMVNL 85
Score = 33.1 bits (76), Expect = 0.30
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E+ EE + E+ E E + EVQ+E+E + E++ E E +E E+ E V
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKEILEKIEGV 76
Score = 30.0 bits (68), Expect = 2.9
Identities = 13/43 (30%), Positives = 23/43 (53%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E+ EE + E+ E E + E +E+E + E++ E E +E
Sbjct: 26 SEDIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKE 68
Score = 28.5 bits (64), Expect = 9.7
Identities = 12/41 (29%), Positives = 24/41 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ EE + E+ E E + E ++E+E+ + E++ E E +E
Sbjct: 28 DIEESDTPNNEKTEPEFVQGEVQKEDEISDYEKQYENELKE 68
>gnl|CDD|237631 PRK14162, PRK14162, heat shock protein GrpE; Provisional.
Length = 194
Score = 33.7 bits (77), Expect = 0.21
Identities = 14/46 (30%), Positives = 30/46 (65%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+EE E++ +EE +E ++E +E +EE++E++ E+ E+E+
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKEI 48
Score = 32.1 bits (73), Expect = 0.65
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+EE E++ +EE +E ++E +E +EE++E++ E+ E+E
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKE 47
Score = 31.7 bits (72), Expect = 0.80
Identities = 14/45 (31%), Positives = 28/45 (62%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+EE E++ +EE +E +E +E +EE++E++ E+ E+E
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKE 47
Score = 31.3 bits (71), Expect = 0.96
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+EE E++ +EE +E ++E +E +EE++E++ E+ E+E
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKE 47
Score = 31.3 bits (71), Expect = 1.1
Identities = 14/45 (31%), Positives = 29/45 (64%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+EE E++ +EE +E ++E +E +EE++E++ E+ E+E
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKE 47
Score = 30.2 bits (68), Expect = 2.5
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+EE E++ +EE +E + + +E +EE++E++ E+ E+E
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKE 47
Score = 30.2 bits (68), Expect = 2.6
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+EE E++ +EE +E ++ +E +EE++E++ E+ E+E
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKE 47
Score = 29.8 bits (67), Expect = 3.8
Identities = 13/45 (28%), Positives = 28/45 (62%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+EE E++ +EE +E ++E + +EE++E++ E+ E+E
Sbjct: 3 KEEFPSEKDLPQEETTDEAPKKEAKEAPKEEDQEKQNPVEDLEKE 47
>gnl|CDD|206063 pfam13892, DBINO, DNA-binding domain. DBINO is a DNA-binding
domain found on global transcription activator SNF2L1
proteins and chromatin re-modelling proteins.
Length = 140
Score = 32.6 bits (75), Expect = 0.21
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
++ E+EE E + E+E E+ ++EEE E
Sbjct: 79 KKNEKEERELRKRAEKEALEQAKKEEELRE 108
Score = 29.2 bits (66), Expect = 3.7
Identities = 11/29 (37%), Positives = 20/29 (68%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E+EE E+++ E+E E+ ++EEE E +
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREAK 110
Score = 28.4 bits (64), Expect = 7.4
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
E+EE E + E+E E+ ++EEE E +
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREAK 110
Score = 28.0 bits (63), Expect = 8.8
Identities = 14/43 (32%), Positives = 24/43 (55%), Gaps = 8/43 (18%)
Query: 596 RRGERE--------EEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
+R RE E+EE E + E+E E+ ++EEE++E +
Sbjct: 68 KRLMREMLLFWKKNEKEERELRKRAEKEALEQAKKEEELREAK 110
Score = 28.0 bits (63), Expect = 9.7
Identities = 11/29 (37%), Positives = 17/29 (58%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
E+EE E + E+E E+ +EEE E +
Sbjct: 82 EKEERELRKRAEKEALEQAKKEEELREAK 110
>gnl|CDD|191675 pfam07047, OPA3, Optic atrophy 3 protein (OPA3). This family
consists of several optic atrophy 3 (OPA3) proteins.
OPA3 deficiency causes type III 3-methylglutaconic
aciduria (MGA) in humans. This disease manifests with
early bilateral optic atrophy, spasticity,
extrapyramidal dysfunction, ataxia, and cognitive
deficits, but normal longevity.
Length = 134
Score = 32.6 bits (75), Expect = 0.21
Identities = 13/39 (33%), Positives = 21/39 (53%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
+R R+E ++EEE ++E EE E E E E ++
Sbjct: 96 YQRQSRKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 32.2 bits (74), Expect = 0.28
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+E ++EEE+Q+E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 32.2 bits (74), Expect = 0.32
Identities = 12/37 (32%), Positives = 22/37 (59%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
R+ +E ++EEE ++E EE E E++ E E ++
Sbjct: 98 RQSRKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 31.5 bits (72), Expect = 0.63
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+E ++EEE ++E EE++ E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 30.7 bits (70), Expect = 1.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+E ++EE ++E EE E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 28.8 bits (65), Expect = 4.3
Identities = 13/34 (38%), Positives = 20/34 (58%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+E ++EEE ++E EE E V E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 28.0 bits (63), Expect = 7.8
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+E ++EEE ++E EE E + E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
Score = 28.0 bits (63), Expect = 9.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E ++EEE ++E++E E E E E E ++
Sbjct: 101 RKEAKKEEELQQELEELEARVGELELEIERQKAR 134
>gnl|CDD|219293 pfam07093, SGT1, SGT1 protein. This family consists of several
eukaryotic SGT1 proteins. Human SGT1 or hSGT1 is known
to suppress GCR2 and is highly expressed in the muscle
and heart. The function of this family is unknown
although it has been speculated that SGT1 may be
functionally analogous to the Gcr2p protein of
Saccharomyces cerevisiae which is known to be a
regulatory factor of glycolytic gene expression.
Length = 557
Score = 34.3 bits (79), Expect = 0.22
Identities = 12/75 (16%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE-------------EE 638
I + ++ +E+++E+++E+E+ + EE++E ++ + E
Sbjct: 477 IDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNNADISNS 536
Query: 639 EEEEEEEEEEEEEEV 653
E+++++ E V
Sbjct: 537 GSSGAEDDDDDIEGV 551
Score = 33.9 bits (78), Expect = 0.29
Identities = 13/65 (20%), Positives = 29/65 (44%), Gaps = 10/65 (15%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE----------EEEEEEEEEEEEEEEEEE 648
E ++E+++E+E+ + EE EE + + E + E+++++ E
Sbjct: 490 EDDDEDDDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNNADISNSGSSGAEDDDDDIE 549
Query: 649 EEEEV 653
E V
Sbjct: 550 GVEPV 554
Score = 29.3 bits (66), Expect = 8.7
Identities = 11/63 (17%), Positives = 35/63 (55%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+++E + + ++ ++ +E+++E+++ E+ + EE EE ++ + E ++ +
Sbjct: 473 KDDEIDNDLPDDSDDADEDDDEDDDEDEDSSSDSTLEELEEYMDQMDAELKQTDSSNNAD 532
Query: 661 ISL 663
IS
Sbjct: 533 ISN 535
>gnl|CDD|187702 cd09278, RNase_HI_prokaryote_like, RNase HI family found mainly in
prokaryotes. Ribonuclease H (RNase H) is classified
into two evolutionarily unrelated families, type 1
(prokaryotic RNase HI, eukaryotic RNase H1 and viral
RNase H) and type 2 (prokaryotic RNase HII and HIII, and
eukaryotic RNase H2). RNase H is an endonuclease that
cleaves the RNA strand of an RNA/DNA hybrid in a
sequence non-specific manner. RNase H is involved in DNA
replication, repair and transcription. RNase H is widely
present in various organisms, including bacteria,
archaea and eukaryotes and most prokaryotic and
eukaryotic genomes contain multiple RNase H genes.
Despite the lack of amino acid sequence homology, Type 1
and type 2 RNase H share a main-chain fold and steric
configurations of the four acidic active-site (DEDD),
residues and have the same catalytic mechanism and
functions in cells. One of the important functions of
RNase H is to remove Okazaki fragments during DNA
replication. Prokaryotic RNase H varies greatly in
domain structures and substrate specificities.
Prokaryotes and some single-cell eukaryotes do not
require RNase H for viability.
Length = 139
Score = 32.9 bits (76), Expect = 0.22
Identities = 11/32 (34%), Positives = 13/32 (40%), Gaps = 1/32 (3%)
Query: 418 YLKLCKK-DITFMWCPSHCGIKGNEIVDVAAK 448
L K +T+ W H G GNE D A
Sbjct: 104 LDALLAKHQVTWHWVKGHAGHPGNERADELAN 135
Score = 32.5 bits (75), Expect = 0.24
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 498 KKDITFMWCPSHCGIKGNELVDVAAK 523
K +T+ W H G GNE D A
Sbjct: 110 KHQVTWHWVKGHAGHPGNERADELAN 135
>gnl|CDD|165442 PHA03171, PHA03171, UL37 tegument protein; Provisional.
Length = 499
Score = 34.3 bits (78), Expect = 0.22
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
GE EEE+ + E + E EEE+EEEE E + E
Sbjct: 79 FAEAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 32.7 bits (74), Expect = 0.68
Identities = 17/35 (48%), Positives = 22/35 (62%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E EE EEE+ + E + E EEE+EEEE E + E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 32.3 bits (73), Expect = 0.85
Identities = 20/50 (40%), Positives = 27/50 (54%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E EE EEE+ + E E EEE+EEEE E + E + E + G +E
Sbjct: 81 EAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPEVNPLDAEGLSGLARE 130
Score = 32.0 bits (72), Expect = 1.3
Identities = 15/32 (46%), Positives = 22/32 (68%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
EE EEE+ + E + E EEE+EEEE++ + E
Sbjct: 84 EEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 31.6 bits (71), Expect = 1.4
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 7/53 (13%)
Query: 598 GEREEEEEEEE-------EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
GE E E + E EE EEE+ + E + + EEE+EEEE E + E
Sbjct: 63 GENSETERPRDLTAALFAEAGEEAEEEDNDRECPDTEAEEEDEEEEIEAPDPE 115
Score = 30.0 bits (67), Expect = 5.1
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEE 624
L E EEE+ + E + E EEE+EEEE
Sbjct: 78 LFAEAGEEAEEEDNDRECPDTEAEEEDEEEE 108
>gnl|CDD|227635 COG5325, COG5325, t-SNARE complex subunit, syntaxin [Intracellular
trafficking and secretion].
Length = 283
Score = 33.7 bits (77), Expect = 0.24
Identities = 14/54 (25%), Positives = 27/54 (50%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
++ EEEE+EE ++ +Q++ EE E ++ E +EE + + G
Sbjct: 150 NDQHPLEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEEIKNLARG 203
Score = 32.9 bits (75), Expect = 0.52
Identities = 12/60 (20%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE---EEEEEEV 653
+ + + + ++ EEEE+EE + ++ +++ EE E ++ E +EE+
Sbjct: 138 QVLQAKFLRNKNNDQHPLEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEEI 197
Score = 29.8 bits (67), Expect = 4.1
Identities = 15/54 (27%), Positives = 25/54 (46%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++ EEEE+EE ++ Q+ EE E ++ E +EE + RG
Sbjct: 150 NDQHPLEEEEDEESLSSLGSQQTLQQQGLSNEELEYQQILITERDEEIKNLARG 203
>gnl|CDD|237256 PRK12901, secA, preprotein translocase subunit SecA; Reviewed.
Length = 1112
Score = 34.6 bits (80), Expect = 0.24
Identities = 19/83 (22%), Positives = 40/83 (48%), Gaps = 5/83 (6%)
Query: 560 PNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEE 619
P K+K P ++ S+ DE+ + + + Q I+ + + + EE + E E +
Sbjct: 22 PIVEKIKAEYPELE--ALSN-DELRA-KTDEFKQYIKE-AVADIDAKIEELKAEAIESLD 76
Query: 620 EEEEEEVQEEEEEEEEEEEEEEE 642
+E E++ + ++ E+E E E
Sbjct: 77 IDEREDIYAQIDKLEKEAYEILE 99
>gnl|CDD|235449 PRK05415, PRK05415, hypothetical protein; Provisional.
Length = 341
Score = 34.1 bits (79), Expect = 0.24
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+EE EEEEE E ++ +E+E +EEEEEE E E E
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
Score = 33.3 bits (77), Expect = 0.34
Identities = 19/46 (41%), Positives = 25/46 (54%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+EE EEEEE E ++ +E+E +EEEEEE E E E
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
Score = 32.5 bits (75), Expect = 0.64
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+EE EEEEE E++ ++ +E+E +EEEEEE E+
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGEL 51
Score = 32.5 bits (75), Expect = 0.71
Identities = 20/49 (40%), Positives = 26/49 (53%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+EE EEEEE E ++ + QE +EEEEEE E E E +R
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEAALR 60
Score = 31.4 bits (72), Expect = 1.4
Identities = 21/53 (39%), Positives = 28/53 (52%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
L R + +EE EEEEE E ++ +E+E +EEEEEE E E E
Sbjct: 5 LKPRIDFDEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
Score = 30.6 bits (70), Expect = 2.8
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+EE EEEEE E ++ +E+ +EEEEEE E E E
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
Score = 29.8 bits (68), Expect = 4.7
Identities = 18/46 (39%), Positives = 24/46 (52%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+EE EEEEE E ++ +E + +EEEEEE E E E
Sbjct: 12 DEEPLEEEEEPELRAQQAFDEQEAFAPAAPDEEEEEEGELEAAVEA 57
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 34.3 bits (79), Expect = 0.24
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E EE E E E+V + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 31.6 bits (72), Expect = 1.6
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E EE E E E+ + EEE E +++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 31.2 bits (71), Expect = 2.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EE E E E + EEE E E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 29.7 bits (67), Expect = 5.9
Identities = 15/40 (37%), Positives = 23/40 (57%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E EE E E E+ + EEE + E++ ++EE+EEE
Sbjct: 404 EGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
Score = 28.9 bits (65), Expect = 9.6
Identities = 17/41 (41%), Positives = 23/41 (56%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
GE EE E E E+ + EEE E E+ ++EE+EEE
Sbjct: 403 GEGMEEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEEM 443
>gnl|CDD|184235 PRK13678, PRK13678, hypothetical protein; Provisional.
Length = 95
Score = 31.8 bits (73), Expect = 0.24
Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 6/53 (11%)
Query: 603 EEEEEEEEEEEEE------EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EEE+E++E E E+E+ +E ++Q E +EE + EE +EE
Sbjct: 43 PAGEEEDEDDEIEIQAFSFTEDEDGDEGDLQPIETDEEWDMIEEVLNTFLDEE 95
Score = 31.5 bits (72), Expect = 0.29
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EEE+E++E E + E+E+ +E + + E +EE + EEV
Sbjct: 43 PAGEEEDEDDEIEIQAFSFTEDEDGDEGDLQPIETDEEWDMIEEV 87
Score = 29.9 bits (68), Expect = 0.90
Identities = 14/46 (30%), Positives = 26/46 (56%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EEE+E++E E + E+E+ +E + + E +EE + EE +
Sbjct: 43 PAGEEEDEDDEIEIQAFSFTEDEDGDEGDLQPIETDEEWDMIEEVL 88
>gnl|CDD|224548 COG1633, COG1633, Uncharacterized conserved protein [Function
unknown].
Length = 176
Score = 33.2 bits (76), Expect = 0.24
Identities = 22/77 (28%), Positives = 32/77 (41%), Gaps = 5/77 (6%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE-----EEEEEEEEEEEEEE 645
+ +L + EEEE E E E E + +E E+ V E E E++ E EE
Sbjct: 77 LEKLTPKEVSSEEEEGEIESEILEYLQPGKEMEKSVSYLEAIEAAMEAEKDTIEFYEELL 136
Query: 646 EEEEEEEVRGGGKEEIS 662
+E EE + K
Sbjct: 137 DELVNEEAKKLFKTIAD 153
Score = 30.9 bits (70), Expect = 1.4
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 12/88 (13%)
Query: 588 IENIIQLIRRGEREEE----------EEEEEEEEEEEEEEEEEEEEEEVQE--EEEEEEE 635
IE ++ + RGE E E+EE + E+ +EE + ++ E+ +E
Sbjct: 25 IEELLAIAIRGELEAIKFYEELAERIEDEEIRKLFEDLADEEMRHLRKFEKLLEKLTPKE 84
Query: 636 EEEEEEEEEEEEEEEEEVRGGGKEEISL 663
EEEE E E E E ++ G + E S+
Sbjct: 85 VSSEEEEGEIESEILEYLQPGKEMEKSV 112
Score = 30.1 bits (68), Expect = 2.4
Identities = 16/58 (27%), Positives = 25/58 (43%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E++ R R+ E+ E+ +E EEEE E E E + +E E+ E
Sbjct: 59 FEDLADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQPGKEMEKSVSYLE 116
Score = 30.1 bits (68), Expect = 2.5
Identities = 14/55 (25%), Positives = 22/55 (40%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ E + E+ E+ +E EEEE E E E + +E E+ E
Sbjct: 62 LADEEMRHLRKFEKLLEKLTPKEVSSEEEEGEIESEILEYLQPGKEMEKSVSYLE 116
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 33.5 bits (77), Expect = 0.25
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R + I + + ++ E E+E E EE+ EE +++ E + + +EE + E + +E
Sbjct: 37 REKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAR 96
Query: 647 EEEEE 651
EE +E
Sbjct: 97 EEADE 101
Score = 33.1 bits (76), Expect = 0.38
Identities = 20/67 (29%), Positives = 34/67 (50%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E I ++ E E+E E EE+ EE +++ EV + +EE + E + +E E
Sbjct: 38 EKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEARE 97
Query: 649 EEEEVRG 655
E +E+R
Sbjct: 98 EADEIRE 104
Score = 31.9 bits (73), Expect = 0.87
Identities = 16/67 (23%), Positives = 35/67 (52%), Gaps = 3/67 (4%)
Query: 591 IIQLI-RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE--EEEEEEEEEEEE 647
I+ + R ++ E + + ++ E E+E E EE+ +E +++ E + +EE + E +
Sbjct: 30 ILDAMDAREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQ 89
Query: 648 EEEEEVR 654
+E R
Sbjct: 90 RLLDEAR 96
Score = 30.0 bits (68), Expect = 3.4
Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 599 EREEEEEEE-EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
RE++ E + + ++ E E+E E E + EE +++ E + +EE + E + +
Sbjct: 36 AREKKIAGELADADTKKREAEQERREYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEA 95
Query: 658 KEE 660
+EE
Sbjct: 96 REE 98
>gnl|CDD|145361 pfam02161, Prog_receptor, Progesterone receptor.
Length = 456
Score = 34.2 bits (78), Expect = 0.25
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
+ +EE +E+ Q+++ + E E E E E R K+ L
Sbjct: 54 QGQEEPDEKTQDQQSLSDVERAEPEVEASRGRGEGSSRPPEKDSGLLD 101
Score = 33.1 bits (75), Expect = 0.54
Identities = 12/53 (22%), Positives = 25/53 (47%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
+TSD + P + + R + +EE +E+ ++++ + E E E E
Sbjct: 31 QTSDGEASAIPIALDGLLYPRSCQGQEEPDEKTQDQQSLSDVERAEPEVEASR 83
>gnl|CDD|237178 PRK12705, PRK12705, hypothetical protein; Provisional.
Length = 508
Score = 33.9 bits (78), Expect = 0.26
Identities = 18/63 (28%), Positives = 31/63 (49%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
L + E ++ +E E EE + EEE VQ+EE+ + E+ + E + EE E+
Sbjct: 53 ALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREK 112
Query: 652 EVR 654
+
Sbjct: 113 ALS 115
Score = 33.9 bits (78), Expect = 0.32
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
R EREE + EEE ++EE+ + E+ + E + EE E+ E E EE E++
Sbjct: 73 RREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQ 127
Score = 33.1 bits (76), Expect = 0.47
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 9/74 (12%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEE---------EEEEEEVQEEEEEEEEEEE 638
+ + ER ++ +E E EE + EEE + E++ E + EE E+
Sbjct: 53 ALLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREK 112
Query: 639 EEEEEEEEEEEEEE 652
E E EE E+
Sbjct: 113 ALSARELELEELEK 126
Score = 32.8 bits (75), Expect = 0.58
Identities = 16/62 (25%), Positives = 29/62 (46%), Gaps = 2/62 (3%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE--EEEE 652
R ++EE+ + E+ + E + EE E+ + E E EE E++ + E E+
Sbjct: 83 EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQ 142
Query: 653 VR 654
R
Sbjct: 143 AR 144
Score = 32.8 bits (75), Expect = 0.59
Identities = 13/58 (22%), Positives = 27/58 (46%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+L+++ E+ + E+ + E + EE E+ E EE E++ + E E+
Sbjct: 85 RLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQ 142
Score = 32.0 bits (73), Expect = 1.0
Identities = 13/64 (20%), Positives = 28/64 (43%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E ++Q + + E+ + E + EE E+ E E++E E++ + E E+
Sbjct: 83 EERLVQKEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQ 142
Query: 648 EEEE 651
+
Sbjct: 143 ARKL 146
Score = 31.2 bits (71), Expect = 2.1
Identities = 18/70 (25%), Positives = 30/70 (42%)
Query: 580 QDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
++E R E + L + E E+ E E EE E++ + E V E+ +
Sbjct: 89 KEEQLDARAEKLDNLENQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLL 148
Query: 640 EEEEEEEEEE 649
+ + E EEE
Sbjct: 149 KLLDAELEEE 158
Score = 30.1 bits (68), Expect = 4.6
Identities = 19/80 (23%), Positives = 37/80 (46%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E L+R ++ +E E EE + EEE ++EE++ E+ + E + EE E+
Sbjct: 54 LLEAKELLLRERNQQRQEARREREELQREEERLVQKEEQLDARAEKLDNLENQLEEREKA 113
Query: 647 EEEEEEVRGGGKEEISLHFY 666
E ++++ Y
Sbjct: 114 LSARELELEELEKQLDNELY 133
Score = 29.3 bits (66), Expect = 8.5
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ EE E+ E E EE E++ + E+ E+ + + + E EEE
Sbjct: 105 NQLEEREKALSARELELEELEKQLDNELYRVAGLTPEQARKLLLKLLDAELEEE 158
>gnl|CDD|184696 PRK14474, PRK14474, F0F1 ATP synthase subunit B; Provisional.
Length = 250
Score = 33.6 bits (77), Expect = 0.26
Identities = 13/67 (19%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE---EEEEEEEEEEE 647
IIQ++++ ++ ++ E+ ++E +E E + Q+ E++ + +E +E+ +
Sbjct: 30 IIQVMKKRQQRIANRWQDAEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQ 89
Query: 648 EEEEEVR 654
E R
Sbjct: 90 HLLNEAR 96
Score = 29.4 bits (66), Expect = 5.4
Identities = 20/87 (22%), Positives = 37/87 (42%), Gaps = 13/87 (14%)
Query: 569 RPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEV-- 626
+P I+V K Q RI N Q E+ ++E +E E ++++ E++
Sbjct: 28 KPIIQVMKKRQQ------RIANRWQ---DAEQRQQEAGQEAERYRQKQQSLEQQRASFMA 78
Query: 627 --QEEEEEEEEEEEEEEEEEEEEEEEE 651
QE +E+ + E E+ +E
Sbjct: 79 QAQEAADEQRQHLLNEAREDVATARDE 105
>gnl|CDD|227494 COG5165, POB3, Nucleosome-binding factor SPN, POB3 subunit
[Transcription / DNA replication, recombination, and
repair / Chromatin structure and dynamics].
Length = 508
Score = 34.2 bits (78), Expect = 0.27
Identities = 11/49 (22%), Positives = 24/49 (48%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E+ EE+E E+E+ ++ + + EE + + + E +EE
Sbjct: 457 DSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEE 505
Score = 34.2 bits (78), Expect = 0.27
Identities = 12/58 (20%), Positives = 23/58 (39%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
G + E+ EE+E E+E+ + + EE + + + E +EE
Sbjct: 448 LQTDLGSISDSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEE 505
Score = 33.4 bits (76), Expect = 0.46
Identities = 12/49 (24%), Positives = 24/49 (48%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ E+ EE+E E+E+ + V + + EE + + + E +EE
Sbjct: 457 DSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEE 505
Score = 33.1 bits (75), Expect = 0.49
Identities = 11/51 (21%), Positives = 22/51 (43%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ EE+E E+E+ + + +V EE + + + E +EE
Sbjct: 458 SEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEERPS 508
Score = 32.3 bits (73), Expect = 1.0
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+ EE+E E+E+ + + EE + + + E +EE
Sbjct: 458 SEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEERPS 508
Score = 31.9 bits (72), Expect = 1.4
Identities = 11/49 (22%), Positives = 22/49 (44%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ E+ EE+ E+E+ + + + EE + + + GG EE
Sbjct: 457 DSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEE 505
Score = 30.7 bits (69), Expect = 2.8
Identities = 11/50 (22%), Positives = 22/50 (44%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E+ EE+E E+E+ + + EE + + + E +E R
Sbjct: 457 DSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEER 506
Score = 30.4 bits (68), Expect = 3.3
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+ E+ EE+E ++E+ + + + EE + + + G +E
Sbjct: 457 DSEDINMGSAGEEDESEDEDFQMVSDSDVAEEYDLQAALSDAEGGSDEE 505
>gnl|CDD|236080 PRK07734, motB, flagellar motor protein MotB; Reviewed.
Length = 259
Score = 33.6 bits (77), Expect = 0.27
Identities = 11/37 (29%), Positives = 25/37 (67%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ E+E+E+ E E+ +++EE E ++++E EE++
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEELKA 109
Score = 32.8 bits (75), Expect = 0.53
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
+ E+E+E E E+ +++EE E + ++E EE
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEE 106
Score = 32.4 bits (74), Expect = 0.60
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ E+E+E E+ +++EE E ++++E EE
Sbjct: 73 KPEDEKELSASSLEAEQAKKKEEAEAKKKKEMEE 106
>gnl|CDD|220614 pfam10174, Cast, RIM-binding protein of the cytomatrix active zone.
This is a family of proteins that form part of the CAZ
(cytomatrix at the active zone) complex which is
involved in determining the site of synaptic vesicle
fusion. The C-terminus is a PDZ-binding motif that binds
directly to RIM (a small G protein Rab-3A effector). The
family also contains four coiled-coil domains.
Length = 774
Score = 34.2 bits (78), Expect = 0.28
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 15/82 (18%)
Query: 587 RIENIIQLIRRGEREEEEEEE---------------EEEEEEEEEEEEEEEEEEVQEEEE 631
+IEN+ + RR ER +EE+E E+ E+ E+E E + Q + +
Sbjct: 400 KIENLQETFRRKERRLKEEKERLRSLQTDTNTDTALEKLEKALAEKERIIERLKEQRDRD 459
Query: 632 EEEEEEEEEEEEEEEEEEEEEV 653
E E+EE E ++E E+ +EEV
Sbjct: 460 ERYEQEEFETYKKEFEDLKEEV 481
Score = 30.4 bits (68), Expect = 4.3
Identities = 15/55 (27%), Positives = 30/55 (54%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ + E+E E +E+ + +E E+EE E ++E E+ +EE + + + E E
Sbjct: 438 LEKALAEKERIIERLKEQRDRDERYEQEEFETYKKEFEDLKEEVQNLQLKLSERE 492
Score = 29.6 bits (66), Expect = 6.5
Identities = 23/83 (27%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Query: 564 KLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE 623
+L++++ ++ E E II+ R E+ + +E E+EE E ++E E+ +
Sbjct: 421 RLRSLQTDTNTDTALEKLEKALAEKERIIE--RLKEQRDRDERYEQEEFETYKKEFEDLK 478
Query: 624 EEVQEEEEEEEEEEEEEEEEEEE 646
EEVQ + + E E + E +EE
Sbjct: 479 EEVQNLQLKLSERELQLELLKEE 501
>gnl|CDD|237028 PRK12267, PRK12267, methionyl-tRNA synthetase; Reviewed.
Length = 648
Score = 34.0 bits (79), Expect = 0.28
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ EEE+ +E+ E +E EE+E++ E+ E+
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPEI 543
Score = 33.6 bits (78), Expect = 0.41
Identities = 10/32 (31%), Positives = 20/32 (62%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+ EEE +E+++ +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.44
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ EEE ++E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 33.2 bits (77), Expect = 0.47
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.9 bits (76), Expect = 0.63
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.5 bits (75), Expect = 0.90
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.5 bits (75), Expect = 0.91
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.1 bits (74), Expect = 1.1
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ EEE + Q E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.1 bits (74), Expect = 1.1
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ EEE +E+ E + EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.1 bits (74), Expect = 1.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ EEE +E+ E + EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.1 bits (74), Expect = 1.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+ EEE +E+ +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.1 bits (74), Expect = 1.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+ EEE +E+ E +E EE +++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 32.1 bits (74), Expect = 1.3
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
+ EEE +E+ E +E EE+E + E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 31.7 bits (73), Expect = 1.3
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
R + EEE +E+ E +E EE+ ++ E+ E
Sbjct: 509 RIDVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 31.7 bits (73), Expect = 1.5
Identities = 11/32 (34%), Positives = 18/32 (56%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ EEE +E E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 31.7 bits (73), Expect = 1.7
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 31.3 bits (72), Expect = 2.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ EEE ++ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.5 bits (70), Expect = 3.2
Identities = 10/32 (31%), Positives = 19/32 (59%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+ EEE +E+ E +E +E+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.2 bits (69), Expect = 4.0
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ EEE +E+ E +E E +E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 30.2 bits (69), Expect = 4.3
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ EEE +E+ E +E EE+E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.8 bits (68), Expect = 5.6
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 10/45 (22%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
PRI+ EEE +E+ E +E EE+E++ ++ E
Sbjct: 508 PRIDV----------EEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
Score = 29.8 bits (68), Expect = 6.1
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+ EEE +E+ E +E ++E++ E+ E
Sbjct: 511 DVEEEIAYIKEQMEGSAPKEPEEKEKKPEKPE 542
>gnl|CDD|177400 PHA02571, a-gt.4, hypothetical protein; Provisional.
Length = 109
Score = 32.0 bits (73), Expect = 0.29
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+E + EE +EE EE E+Q E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 31.2 bits (71), Expect = 0.47
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+E + EE +EE EE + E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 30.5 bits (69), Expect = 0.96
Identities = 10/34 (29%), Positives = 17/34 (50%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+E + EE +EE EE E + + E E++
Sbjct: 3 DESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 29.7 bits (67), Expect = 1.6
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+E + EE EE EE E + E E E++ + ++ +E
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAAKILKKNRRE 45
Score = 29.7 bits (67), Expect = 1.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+E + EE +EE EE+ E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 29.3 bits (66), Expect = 2.4
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E + EE +EEV+E E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.9 bits (65), Expect = 2.9
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+E + EE + + EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.9 bits (65), Expect = 3.4
Identities = 9/31 (29%), Positives = 15/31 (48%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
+ EE +EE EE E + E E +++
Sbjct: 6 TDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.5
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+E + EE +EE EE E + E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.6
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+E + EE +EE EE E + + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.5 bits (64), Expect = 3.8
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+E + EE +EE EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.2 bits (63), Expect = 5.2
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+E + EE +EE EE + + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 28.2 bits (63), Expect = 6.2
Identities = 9/36 (25%), Positives = 16/36 (44%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+E + EE +EE + E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
Score = 27.8 bits (62), Expect = 8.5
Identities = 10/36 (27%), Positives = 16/36 (44%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+E + EE +E EE E + E E E++
Sbjct: 1 MLDESTDVEELTDEEVEELLSELQARNEAEAEKKAA 36
>gnl|CDD|223683 COG0610, COG0610, Type I site-specific restriction-modification
system, R (restriction) subunit and related helicases
[Defense mechanisms].
Length = 962
Score = 33.9 bits (78), Expect = 0.30
Identities = 20/90 (22%), Positives = 38/90 (42%), Gaps = 8/90 (8%)
Query: 579 DQDEIGSPRIENIIQLIRR--GEREEEEEEEEEEEEEEEEE--EEEEEEEEVQEEEEEEE 634
+ EI I ++Q G E +E E +E E+ ++++ E + E +
Sbjct: 809 GKQEINIDYILELLQTFNDKNGAYESLKELIERIIKEWIEDLRQKKKLIERLIEAINQYR 868
Query: 635 EEEEEEEEEEEEEEE----EEEVRGGGKEE 660
++ + E+ EE EEE + +EE
Sbjct: 869 AKKLDTAEKLEELYILAKKEEEFKQFAEEE 898
Score = 33.9 bits (78), Expect = 0.32
Identities = 19/88 (21%), Positives = 37/88 (42%), Gaps = 8/88 (9%)
Query: 548 MNSEWQSLWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEE 607
N + + ++ IK W + + IE +I+ I + ++ + E
Sbjct: 825 FNDKNGAYESLKELIERI------IKEWIEDLRQKKKL--IERLIEAINQYRAKKLDTAE 876
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+ EE ++EEE ++ +EE EEE
Sbjct: 877 KLEELYILAKKEEEFKQFAEEEGLNEEE 904
Score = 33.5 bits (77), Expect = 0.47
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 5/75 (6%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
S ++ I E I L R++++ E E + ++ + E EE ++E
Sbjct: 834 SLKELIERIIKEWIEDL-----RQKKKLIERLIEAINQYRAKKLDTAEKLEELYILAKKE 888
Query: 638 EEEEEEEEEEEEEEE 652
EE ++ EEE EE
Sbjct: 889 EEFKQFAEEEGLNEE 903
>gnl|CDD|178439 PLN02847, PLN02847, triacylglycerol lipase.
Length = 633
Score = 33.7 bits (77), Expect = 0.32
Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE---EEEEEEEEEEEEE 643
+E+ + ++EEEEE E+ EEEV E E E E+E + +E E
Sbjct: 455 SVEHKSESSSSDGSGHDDEEEEEPLLSEDRVITSSVEEEVTEGELWYELEKELQRQETEV 514
Query: 644 EEEEEEEE 651
+ + +EEE
Sbjct: 515 DAQAQEEE 522
Score = 33.7 bits (77), Expect = 0.37
Identities = 27/92 (29%), Positives = 38/92 (41%), Gaps = 21/92 (22%)
Query: 596 RRGEREEEEEE----------EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
G +EEEEE EEE E E E E+E+Q +E E + + +EEE
Sbjct: 467 GSGHDDEEEEEPLLSEDRVITSSVEEEVTEGELWYELEKELQRQETEVDAQAQEEEAAAA 526
Query: 646 EE--EEEEEVRGGGKEEI---------SLHFY 666
+E EEE + + + S FY
Sbjct: 527 KEITEEENVLAKAVESKTSITSSDLSESQQFY 558
Score = 29.1 bits (65), Expect = 9.3
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
++ + + GE E E+E + +E E + + +EEE +E EEE
Sbjct: 488 SSVEEEVTEGELWYELEKELQRQETEVDAQAQEEEAAAAKEITEEE 533
>gnl|CDD|223130 COG0052, RpsB, Ribosomal protein S2 [Translation, ribosomal
structure and biogenesis].
Length = 252
Score = 33.4 bits (77), Expect = 0.32
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
RG +EEE EE+EE EE E +EE E
Sbjct: 224 RGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 31.9 bits (73), Expect = 0.88
Identities = 14/31 (45%), Positives = 18/31 (58%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
E +EEE EE+EEV+E E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 31.1 bits (71), Expect = 1.7
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEE 624
R G +EEE EE+EE EE E +EE E
Sbjct: 224 RGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.2
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.2
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E +EE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.7 bits (70), Expect = 2.4
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.3 bits (69), Expect = 2.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E + EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 30.3 bits (69), Expect = 3.1
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.9 bits (68), Expect = 3.3
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
R +EEE EE+EE EE E +EE E
Sbjct: 223 GRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.9 bits (68), Expect = 3.4
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE 623
I++ EEE EE+EE EE E +EE E
Sbjct: 220 ILEGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.9 bits (68), Expect = 3.5
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
E +EEE EE+EE EE E +E E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.9 bits (68), Expect = 4.0
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E +EEE ++E+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.9 bits (68), Expect = 4.1
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E +EEE EE+EE EE E +EE
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.9 bits (68), Expect = 4.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.6 bits (67), Expect = 5.1
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ 627
I G +EEE EE+EE EE E +EE +
Sbjct: 220 ILEGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.6 bits (67), Expect = 5.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E +E + EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.2 bits (66), Expect = 6.5
Identities = 16/41 (39%), Positives = 20/41 (48%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
I L+ R E +EEE EE+EE EE E +E E
Sbjct: 212 IYWLLARAILEGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 29.2 bits (66), Expect = 6.6
Identities = 13/31 (41%), Positives = 16/31 (51%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
E +EEE EE+EE EE +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
Score = 28.8 bits (65), Expect = 9.3
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
E +EEE EE+EE EE E +EE E
Sbjct: 222 EGRGGALDEEEAAIEEDEEVEEFEAKEEAAE 252
>gnl|CDD|223294 COG0216, PrfA, Protein chain release factor A [Translation,
ribosomal structure and biogenesis].
Length = 363
Score = 33.7 bits (78), Expect = 0.32
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+E I++ R E ++ +E+ E+ +E EE++ E E +EE +E E + EE EEE
Sbjct: 44 ELEPIVEKYR--EYKKAQEDLEDAKEMLAEEKDPEMREMAEEEIKELEAKIEELEEE 98
Score = 31.0 bits (71), Expect = 2.3
Identities = 29/108 (26%), Positives = 45/108 (41%), Gaps = 26/108 (24%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEE-------EEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+ P + + R+ +E E E E ++ +E+ E+ +E EE E E
Sbjct: 22 LLSDPEVISDPDEYRKLSKEYAELEPIVEKYREYKKAQEDLEDAKEMLAEEKDPEMREMA 81
Query: 635 EEEEEEEEEEEEEEEEE------------------EVRGG-GKEEISL 663
EEE +E E + EE EEE E+R G G +E +L
Sbjct: 82 EEEIKELEAKIEELEEELKILLLPKDPNDDKNIILEIRAGTGGDEAAL 129
>gnl|CDD|225427 COG2872, COG2872, Predicted metal-dependent hydrolases related to
alanyl-tRNA synthetase HxxxH domain [General function
prediction only].
Length = 241
Score = 33.1 bits (76), Expect = 0.33
Identities = 14/55 (25%), Positives = 23/55 (41%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ E+ E+E EE E E +E V EE E+ + + + +V G
Sbjct: 132 DGEDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEG 186
Score = 31.6 bits (72), Expect = 1.1
Identities = 14/59 (23%), Positives = 25/59 (42%), Gaps = 2/59 (3%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEE--EEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
+ E+ E+E EE E E V+E EE E+ + + +V + +I +
Sbjct: 132 DGEDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIRI 190
Score = 31.2 bits (71), Expect = 1.4
Identities = 15/72 (20%), Positives = 27/72 (37%)
Query: 583 IGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+ S + + + G E+ + + E+ E+E EE E E +E
Sbjct: 104 LLSAVLYKVYGALTTGFEIGEDYARIDFDGEDTEDEIEEVEALANELVKENLPVIIYFIP 163
Query: 643 EEEEEEEEEEVR 654
EE E+ V+
Sbjct: 164 REEAEKLPGLVK 175
Score = 29.6 bits (67), Expect = 4.8
Identities = 14/57 (24%), Positives = 23/57 (40%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
GE E+E EE E E +E EE E+ + + + + E ++R
Sbjct: 133 GEDTEDEIEEVEALANELVKENLPVIIYFIPREEAEKLPGLVKLKNKVPPDVEGKIR 189
>gnl|CDD|215180 PLN02316, PLN02316, synthase/transferase.
Length = 1036
Score = 34.1 bits (78), Expect = 0.33
Identities = 17/45 (37%), Positives = 25/45 (55%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
EE+ E E++ +EE E E + EE+ EEE+ E R K E+
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEV 296
Score = 33.7 bits (77), Expect = 0.36
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE+ E E+ +EE E E + EE+ + EEE+ E + + + E E+ E+++
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRREKLQ 304
Score = 32.5 bits (74), Expect = 0.82
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE+ E E+ +EE E E + EE+ +EEE+ E + + + E E+ E
Sbjct: 252 EEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRRE 301
Score = 31.8 bits (72), Expect = 1.7
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E+ + +R E E+ +EE E E + EE+ EEE+ E + + + E E+ E
Sbjct: 247 EDFLLEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRRE 301
Score = 31.4 bits (71), Expect = 2.2
Identities = 15/88 (17%), Positives = 34/88 (38%), Gaps = 4/88 (4%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
D+++ + + + +EE + + + E EE E ++E E E+
Sbjct: 30 NNGDKEDSSTSTSSLSVS----AVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIEVEQN 85
Query: 636 EEEEEEEEEEEEEEEEEVRGGGKEEISL 663
+ + + +EE G ++ SL
Sbjct: 86 QSDVLKSSSIVKEESISTDMDGIDDDSL 113
Score = 31.4 bits (71), Expect = 2.3
Identities = 17/52 (32%), Positives = 26/52 (50%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
L+ RE E+ +EE E E + EE+ EEE E + + + E E+ E
Sbjct: 250 LLEEKRRELEKLAKEEAERERQAEEQRRREEEKAAMEADRAQAKAEVEKRRE 301
Score = 30.2 bits (68), Expect = 4.3
Identities = 14/60 (23%), Positives = 27/60 (45%), Gaps = 7/60 (11%)
Query: 599 EREEEEEEEEEE-------EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+R ++ ++E+ E+ +EE+Q + + E EE E E+E E E+
Sbjct: 25 KRIQQNNGDKEDSSTSTSSLSVSAVEKTSNAKEEIQVDFQHNSESAVEEVEAEDEIEVEQ 84
>gnl|CDD|224739 COG1826, TatA, Sec-independent protein secretion pathway components
[Intracellular trafficking and secretion].
Length = 94
Score = 31.2 bits (71), Expect = 0.34
Identities = 13/58 (22%), Positives = 34/58 (58%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
IR ++ + + E +EE + EE +++++E E + +EE ++ E +E+ +++ +
Sbjct: 36 IREFKKAASDVKNELDEELKLEELDDKKKELTAELQATKEELDQLASELKEDLKKKAK 93
>gnl|CDD|235229 PRK04156, gltX, glutamyl-tRNA synthetase; Provisional.
Length = 567
Score = 33.7 bits (78), Expect = 0.34
Identities = 19/69 (27%), Positives = 32/69 (46%), Gaps = 7/69 (10%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+ + II ++ +E EE EE+ E EE + EEEEE++EE++
Sbjct: 42 SKAKEIIPIV-------KEVVEEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPL 94
Query: 646 EEEEEEEVR 654
E+ +V
Sbjct: 95 PNAEKGKVV 103
Score = 32.9 bits (76), Expect = 0.58
Identities = 15/46 (32%), Positives = 22/46 (47%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
EE EE+ E ++E E EEEEE++EE++ G
Sbjct: 56 EEVNSLSLEEQRERLEELAPELLEEEEEKKEEKKGLPPLPNAEKGK 101
Score = 31.4 bits (72), Expect = 1.9
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
S EI P ++ +++ + EE+ E EE E EEEEE++EE+
Sbjct: 42 SKAKEI-IPIVKEVVEEVNSLSLEEQRERLEELAPELLEEEEEKKEEK 88
>gnl|CDD|219978 pfam08701, GN3L_Grn1, GNL3L/Grn1 putative GTPase. Grn1 (yeast) and
GNL3L (human) are putative GTPases which are required
for growth and play a role in processing of nucleolar
pre-rRNA. This family contains a potential nuclear
localisation signal.
Length = 80
Score = 31.1 bits (71), Expect = 0.35
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
EE EE EE++ ++EEE+E +E + E E +
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 29.1 bits (66), Expect = 1.4
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
EE EE EE++ ++EEE+E +E ++ E E +
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 28.8 bits (65), Expect = 1.8
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
EE EE EE++ ++EEE+E +E + E E +
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 28.8 bits (65), Expect = 1.9
Identities = 14/36 (38%), Positives = 23/36 (63%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EE EE++E++ ++EEE+E +E + E E RG
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 28.8 bits (65), Expect = 2.2
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE EE EE+ +++EEE+E +E + E E +
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 28.0 bits (63), Expect = 3.4
Identities = 14/36 (38%), Positives = 20/36 (55%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE EE EE++ QEEE+E +E + E E +
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 28.0 bits (63), Expect = 3.5
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
EE EE EE++ ++EEE+E ++E + E E +
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 28.0 bits (63), Expect = 3.7
Identities = 13/36 (36%), Positives = 21/36 (58%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE EE EE++ ++EEE+E +E + E E +
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 27.2 bits (61), Expect = 7.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
EE EE EE++ ++EEE+E + + E E +
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 26.8 bits (60), Expect = 8.5
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
EE EE EE++ ++EEE + +E + E E +
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
Score = 26.8 bits (60), Expect = 9.2
Identities = 12/36 (33%), Positives = 20/36 (55%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
EE EE EE++ ++EEE+E + + E E +
Sbjct: 45 EEILEEIEEKKRKQEEEKERRKEARKAERAEARKRG 80
>gnl|CDD|226447 COG3937, COG3937, Uncharacterized conserved protein [Function
unknown].
Length = 108
Score = 31.7 bits (72), Expect = 0.35
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 7/69 (10%)
Query: 593 QLIRRGEREEEE-----EEEEEEEEEEEEEEEEEEEEEVQEEEEEEE--EEEEEEEEEEE 645
+L+++GE EE ++ + +E + E EE+ +++E + E + E +E E
Sbjct: 32 ELVKKGELNAEEAKRFVDDLLRQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTER 91
Query: 646 EEEEEEEVR 654
+ E +V
Sbjct: 92 VDALERQVA 100
Score = 30.5 bits (69), Expect = 0.92
Identities = 13/56 (23%), Positives = 26/56 (46%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ +E + E EE+ + EE + E ++ E +E E + E + + E + R
Sbjct: 53 RQAKEAQGELEEKIPRKIEEMLSDLEVARQSEMDELTERVDALERQVADLENKLKR 108
>gnl|CDD|219789 pfam08315, cwf18, cwf18 pre-mRNA splicing factor. The cwf18 family
is involved in mRNA splicing. It has been isolated as a
subcomplex of the splicosome in Schizosaccharomyces
pombe.
Length = 125
Score = 31.9 bits (73), Expect = 0.36
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 8/75 (10%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEE--------EEEEEEEEEVQEEEEEEEEEEE 638
R E + +L + E +EE E EE++ + E+E + + + E EEE
Sbjct: 10 RKERLAKLRSKEEEKEENGEGEEKDVTHPKLKFRNYDPEDEGLKLGFLAPPKAAEIEEEI 69
Query: 639 EEEEEEEEEEEEEEV 653
+E+ E +EE EE+
Sbjct: 70 KEQLEADEENVIEEI 84
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 33.7 bits (77), Expect = 0.38
Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
Query: 590 NIIQLIRRGEREEEEEEEEEEE-EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+IQL ++E E + + E E + E E E+ E E + EE E++ E
Sbjct: 69 KLIQLENELMQKELEHKRAQIELERKASTLAENYERELDRNLELEVRLKALEELEKKAEN 128
Query: 649 EEEEVR 654
E E
Sbjct: 129 EAAEAE 134
Score = 31.1 bits (70), Expect = 2.2
Identities = 15/57 (26%), Positives = 31/57 (54%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ EE E++ E E E EEE + ++++ + E + + E+E++ +E +E R
Sbjct: 116 LKALEELEKKAENEAAEAEEEAKLLKDKLDAESLKLQNEKEDQLKEAKESISRIKND 172
Score = 30.3 bits (68), Expect = 4.6
Identities = 20/83 (24%), Positives = 39/83 (46%), Gaps = 7/83 (8%)
Query: 564 KLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRR-----GEREEEEE--EEEEEEEEEEE 616
+LK +V K+ + + P +E + +R +E+ E +EE E+ +
Sbjct: 238 ELKRYEQDAEVVKSMKEQLLQIPELERELAALREENRKLRSMKEDNELLKEELEDLQSRL 297
Query: 617 EEEEEEEEEVQEEEEEEEEEEEE 639
E E+ E++ + E E+E+ E E
Sbjct: 298 ERFEKMREKLADLELEKEKLENE 320
>gnl|CDD|237867 PRK14953, PRK14953, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 486
Score = 33.6 bits (77), Expect = 0.38
Identities = 17/60 (28%), Positives = 36/60 (60%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
I I +L++ G ++E +E+ E++EEE+EE + ++ ++ + E + + E +EEE
Sbjct: 357 IVPISELLKEGSKQETKEQPEKKEEEKEELDIDKIILQIIKNEGKIISAILKNAEIKEEE 416
Score = 32.9 bits (75), Expect = 0.53
Identities = 28/126 (22%), Positives = 52/126 (41%), Gaps = 10/126 (7%)
Query: 538 EDFKPFVTALMNSEWQSLWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRR 597
+D P L Q + + K K+ +I + I +++
Sbjct: 355 KDIVPISELLKEGSKQETKEQPEKKEEEKEELDIDKIIL-----QIIKNEGKIISAILKN 409
Query: 598 GEREEEEEE-----EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E +EEE + E+ EE+ + E + ++ E EE ++E+E+E+E E E+ E
Sbjct: 410 AEIKEEEGKITIKVEKSEEDTLDLEIKSIKKYFPFIEFEEVKKEKEKEKERPEFVEKVLE 469
Query: 653 VRGGGK 658
+ G K
Sbjct: 470 LFKGSK 475
>gnl|CDD|212055 cd11486, SLC5sbd_SGLT1, Na(+)/glucose cotransporter SGLT1;solute
binding domain. Human SGLT1 (hSGLT1) is a
high-affinity/low-capacity glucose transporter, which
can also transport galactose. In the transport
mechanism, two Na+ ions first bind to the extracellular
side of the transporter and induce a conformational
change in the glucose binding site. This results in an
increased affinity for glucose. A second conformational
change in the transporter follows, bringing the Na+ and
glucose binding sites to the inner surface of the
membrane. Glucose is then released, followed by the Na+
ions. In the process, hSGLT1 is also able to transport
water and urea and may be a major pathway for transport
of these across the intestinal brush-border membrane.
hSGLT1 is encoded by the SLC5A1 gene and expressed
mostly in the intestine, but also in the trachea,
kidney, heart, brain, testis, and prostate. The
WHO/UNICEF oral rehydration solution (ORS) for the
treatment of secretory diarrhea contains salt and
glucose. The glucose, along with sodium ions, is
transported by hSGLT1 and water is either co-transported
along with these or follows by osmosis. Mutations in
SGLT1 are associated with intestinal glucose galactose
malabsorption (GGM). Up-regulation of intestinal SGLT1
may protect against enteric infections. SGLT1 is
expressed in colorectal, head and neck, and prostate
tumors. Epidermal growth factor receptor (EGFR)
functions in cell survival by stabilizing SGLT1, and
thereby maintaining intracellular glucose levels. SGLT1
is predicted to have 14 membrane-spanning regions. This
subgroup belongs to the solute carrier 5
(SLC5)transporter family.
Length = 635
Score = 33.7 bits (77), Expect = 0.39
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 13/62 (20%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEE-------------EEEEEEEEEEEEEEEEEE 651
EE + + ++ E+E+E E E EE ++ ++ + + EEEE +
Sbjct: 542 EERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEAALKM 601
Query: 652 EV 653
++
Sbjct: 602 KM 603
Score = 33.3 bits (76), Expect = 0.52
Identities = 14/67 (20%), Positives = 30/67 (44%), Gaps = 12/67 (17%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQ------------EEEEEEEEEEEEEEEEEEE 646
ER + + ++ E+E+E E E +EE ++ ++ + + EEEE + +
Sbjct: 543 ERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEAALKMK 602
Query: 647 EEEEEEV 653
+ E
Sbjct: 603 MTDTSEK 609
Score = 31.4 bits (71), Expect = 1.8
Identities = 14/65 (21%), Positives = 29/65 (44%), Gaps = 14/65 (21%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE--------------EEEEEEEEEEEEEE 642
R EE + + ++ E+E+E E E +EE ++ ++ + + EEEE
Sbjct: 538 RNSTEERIDLDADDWTEDEDENEMETDEERKKPGCCRKAYNWFCGFDQGKAPKLTEEEEA 597
Query: 643 EEEEE 647
+ +
Sbjct: 598 ALKMK 602
>gnl|CDD|223716 COG0643, CheA, Chemotaxis protein histidine kinase and related
kinases [Cell motility and secretion / Signal
transduction mechanisms].
Length = 716
Score = 33.5 bits (77), Expect = 0.39
Identities = 20/80 (25%), Positives = 35/80 (43%), Gaps = 11/80 (13%)
Query: 587 RIENIIQLIRRGEREEEEE-----------EEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
+E+++ +R GE E E EE + E+ EE+EE++ ++ + +
Sbjct: 69 AMEDLLDALRNGELELTSELLDLLLEALDALEEMLDAIEDGEEDEEDDADLLDLLAQLAA 128
Query: 636 EEEEEEEEEEEEEEEEEVRG 655
E E + EE EEE
Sbjct: 129 GEGLEPGAADAEEAEEEAAV 148
>gnl|CDD|215059 PLN00111, PLN00111, accumulation of photosystem one; Provisional.
Length = 399
Score = 33.5 bits (77), Expect = 0.39
Identities = 23/65 (35%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE-EEV 653
R G R + E+E EE + E E+ + E E EEE +E EE E E+V
Sbjct: 218 YRIGGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEELKELAEETLEAWEKV 277
Query: 654 RGGGK 658
R G K
Sbjct: 278 RSGVK 282
Score = 29.6 bits (67), Expect = 6.3
Identities = 13/46 (28%), Positives = 16/46 (34%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
I I I E E EE + E E ++ E EEE
Sbjct: 217 IYRIGGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
Score = 29.2 bits (66), Expect = 7.1
Identities = 14/51 (27%), Positives = 18/51 (35%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
R I I + E+E EE + E E + E E EEE
Sbjct: 212 RRTKPIYRIGGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEE 262
Score = 29.2 bits (66), Expect = 7.6
Identities = 12/49 (24%), Positives = 20/49 (40%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+ E+E EE + E E ++ E E EEE++ +E
Sbjct: 221 GGRIVDFEDESEEPDPPPEGPSSPLLTELDDSEIEAPSSEEELKELAEE 269
>gnl|CDD|217284 pfam02915, Rubrerythrin, Rubrerythrin. This domain has a
ferritin-like fold.
Length = 137
Score = 32.0 bits (73), Expect = 0.39
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 4/70 (5%)
Query: 589 ENIIQLI--RRGEREEEEEEEEEEEEEEEEEEEEEEE--EEVQEEEEEEEEEEEEEEEEE 644
+ +L+ E +E E +E E +E E EE+E E
Sbjct: 47 GFLNKLLKDLFLGLELGILKEHVEYTFFPVADELTRENLKEAIEGAMLEEKEAYPFYIEI 106
Query: 645 EEEEEEEEVR 654
E+E EEE R
Sbjct: 107 AEKEGEEEAR 116
Score = 28.1 bits (63), Expect = 8.1
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
EN+ + G EE+E E E+E EEE ++ E E+ EE
Sbjct: 83 ENLKE-AIEGAMLEEKEAYPFYIEIAEKEGEEEARRLFEDLAEAEKRHEE 131
>gnl|CDD|215153 PLN02271, PLN02271, serine hydroxymethyltransferase.
Length = 586
Score = 33.6 bits (77), Expect = 0.40
Identities = 17/51 (33%), Positives = 28/51 (54%)
Query: 571 SIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE 621
SI + S +P +QL+ + E +EE+ EE +E+EEE+ E+E
Sbjct: 28 SITLQIDSSFRSSSNPMPPIPLQLLEQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 30.5 bits (69), Expect = 3.5
Identities = 12/28 (42%), Positives = 21/28 (75%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+++EE+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEHFS 80
Score = 30.5 bits (69), Expect = 3.8
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEE 646
E++EE +E+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.8 bits (67), Expect = 5.9
Identities = 12/26 (46%), Positives = 19/26 (73%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEE 644
E++EE+E EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.4 bits (66), Expect = 7.9
Identities = 12/26 (46%), Positives = 20/26 (76%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEE 649
E+ +E+EE+ EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
Score = 29.4 bits (66), Expect = 8.1
Identities = 13/26 (50%), Positives = 20/26 (76%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEE 643
E++EE+EE EE +E+EEE+ E+E
Sbjct: 53 EQKEEKEEDAGEEGDEDEEEQGEDEH 78
>gnl|CDD|240271 PTZ00108, PTZ00108, DNA topoisomerase 2-like protein; Provisional.
Length = 1388
Score = 33.5 bits (77), Expect = 0.41
Identities = 7/31 (22%), Positives = 22/31 (70%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
R+ + + E++++ E ++ E+E++E++E+
Sbjct: 1356 PRKKKSDSSSEDDDDSEVDDSEDEDDEDDED 1386
Score = 32.3 bits (74), Expect = 1.1
Identities = 10/60 (16%), Positives = 28/60 (46%)
Query: 566 KTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
K K S + ++ L R +++ + E++++ E ++ E+E++E++
Sbjct: 1325 KKSEKKTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDD 1384
Score = 31.9 bits (73), Expect = 1.6
Identities = 7/29 (24%), Positives = 22/29 (75%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+ + E++++ EV + E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 30.8 bits (70), Expect = 3.1
Identities = 10/59 (16%), Positives = 31/59 (52%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
KT+ + + + + R R +++ + E++++ E ++ E+E E++E+++
Sbjct: 1330 KTARKKKSKTRVKQASASQSSRLLRRPRKKKSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 29.6 bits (67), Expect = 6.4
Identities = 6/25 (24%), Positives = 19/25 (76%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEE 652
+ E++++ E ++ E+E++E++E+
Sbjct: 1362 DSSSEDDDDSEVDDSEDEDDEDDED 1386
Score = 29.6 bits (67), Expect = 6.7
Identities = 6/29 (20%), Positives = 22/29 (75%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ + E++++ E ++ E+E++E++E+++
Sbjct: 1360 KSDSSSEDDDDSEVDDSEDEDDEDDEDDD 1388
Score = 29.6 bits (67), Expect = 7.1
Identities = 6/25 (24%), Positives = 19/25 (76%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEE 652
E++++ E ++ E+E++E++E++
Sbjct: 1363 SSSEDDDDSEVDDSEDEDDEDDEDD 1387
>gnl|CDD|163064 TIGR02894, DNA_bind_RsfA, transcription factor, RsfA family. In a
subset of endospore-forming members of the Firmcutes,
members of this protein family are found, several to a
genome. Two very strongly conserved sequences regions
are separated by a highly variable linker region. Much
of the linker region was excised from the seed alignment
for this model. A characterized member is the
prespore-specific transcription RsfA from Bacillus
subtilis, previously called YwfN, which is controlled by
sigma factor F and seems to fine-tune expression of some
genes in the sigma-F regulon. A paralog in Bacillus
subtilis is designated YlbO [Regulatory functions, DNA
interactions, Cellular processes, Sporulation and
germination].
Length = 161
Score = 32.0 bits (73), Expect = 0.42
Identities = 19/97 (19%), Positives = 43/97 (44%), Gaps = 5/97 (5%)
Query: 556 WDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEE 615
W+ + I + K K + E GS ++++I ++ + ++ ++E
Sbjct: 51 WNAYVRKQYEEAIELAKKQRKELKR-EAGSLTLQDVISFLQ----NLKTTNPSDQALQKE 105
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + + E +Q+ EE E+E E+ + EE+ +
Sbjct: 106 NERLKNQNESLQKRNEELEKELEKLRQRLSTIEEDYQ 142
>gnl|CDD|100109 cd05831, Ribosomal_P1, Ribosomal protein P1. This subfamily
represents the eukaryotic large ribosomal protein P1.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P1 is located in the L12 stalk, with proteins
P2, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers) and bacteria may have four or six
copies (two or three homodimers), depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plant species have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site located in the C-terminal
region of P2. TCS inactivates the ribosome by
depurinating a specific adenine in the sarcin-ricin loop
of 28S rRNA.
Length = 103
Score = 31.1 bits (71), Expect = 0.45
Identities = 11/24 (45%), Positives = 17/24 (70%)
Query: 634 EEEEEEEEEEEEEEEEEEEVRGGG 657
E ++EE++EEEEEE ++ G G
Sbjct: 78 AAEAKKEEKKEEEEEESDDDMGFG 101
Score = 30.4 bits (69), Expect = 0.76
Identities = 9/23 (39%), Positives = 16/23 (69%)
Query: 625 EVQEEEEEEEEEEEEEEEEEEEE 647
E ++EE++EEEEEE +++
Sbjct: 75 AAAAAEAKKEEKKEEEEEESDDD 97
Score = 30.4 bits (69), Expect = 0.85
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 601 EEEEEEEEEEEEEEEEEEEE 620
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 30.4 bits (69), Expect = 0.85
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 602 EEEEEEEEEEEEEEEEEEEE 621
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 30.4 bits (69), Expect = 0.85
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 603 EEEEEEEEEEEEEEEEEEEE 622
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 30.4 bits (69), Expect = 0.85
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 604 EEEEEEEEEEEEEEEEEEEE 623
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 30.4 bits (69), Expect = 0.85
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 605 EEEEEEEEEEEEEEEEEEEE 624
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 30.4 bits (69), Expect = 0.85
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 606 EEEEEEEEEEEEEEEEEEEE 625
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 30.4 bits (69), Expect = 0.85
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 629 EEEEEEEEEEEEEEEEEEEE 648
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 30.4 bits (69), Expect = 0.85
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 630 EEEEEEEEEEEEEEEEEEEE 649
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 30.4 bits (69), Expect = 0.85
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 631 EEEEEEEEEEEEEEEEEEEE 650
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 30.4 bits (69), Expect = 0.85
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 632 EEEEEEEEEEEEEEEEEEEE 651
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 30.4 bits (69), Expect = 0.85
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 633 EEEEEEEEEEEEEEEEEEEE 652
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 29.6 bits (67), Expect = 1.5
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 598 GEREEEEEEEEEEEEEEEEEE 618
E ++EE++EEEEEE +++
Sbjct: 77 AAAEAKKEEKKEEEEEESDDD 97
Score = 28.4 bits (64), Expect = 3.9
Identities = 9/20 (45%), Positives = 16/20 (80%)
Query: 623 EEEVQEEEEEEEEEEEEEEE 642
E ++EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 28.1 bits (63), Expect = 4.7
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 618 EEEEEEEEVQEEEEEEEEEE 637
E ++EE +EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 28.1 bits (63), Expect = 4.8
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 622 EEEEVQEEEEEEEEEEEEEE 641
E +EE++EEEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
Score = 27.7 bits (62), Expect = 6.6
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 617 EEEEEEEEEVQEEEEEEEEE 636
E ++EE+ +EEEEE +++
Sbjct: 78 AAEAKKEEKKEEEEEESDDD 97
>gnl|CDD|237756 PRK14559, PRK14559, putative protein serine/threonine phosphatase;
Provisional.
Length = 645
Score = 33.5 bits (77), Expect = 0.45
Identities = 17/63 (26%), Positives = 27/63 (42%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
++ S +I+ I QL R + E E E E E E E E + + ++ E E E
Sbjct: 302 QDLQSGKIQTIAQLRLRLQELATELEAEGEAEFESTEGETTLAPSILQSDDSESPIHETE 361
Query: 641 EEE 643
+
Sbjct: 362 DAP 364
Score = 32.3 bits (74), Expect = 0.95
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 5/85 (5%)
Query: 573 KVWKTSDQDEIGSPRIENIIQLIRR---GEREEEEEEEEE-EEEEEEEEEEEEEEEEVQE 628
+VW+ + + E++I L++ G+ + + +E E E E E E E E
Sbjct: 280 QVWQQLFT-QSQRTQFESLIPLLQDLQSGKIQTIAQLRLRLQELATELEAEGEAEFESTE 338
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEV 653
E + ++ E E E+
Sbjct: 339 GETTLAPSILQSDDSESPIHETEDA 363
>gnl|CDD|107059 PHA01746, PHA01746, hypothetical protein.
Length = 131
Score = 31.8 bits (72), Expect = 0.47
Identities = 17/45 (37%), Positives = 28/45 (62%), Gaps = 8/45 (17%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
+PR N IQ EEE++ E++EE+EE+ E+ ++ V+EE
Sbjct: 94 TPRNNNAIQ--------EEEDDMEQQEEKEEKGREKGRKKNVEEE 130
>gnl|CDD|184535 PRK14144, PRK14144, heat shock protein GrpE; Provisional.
Length = 199
Score = 32.4 bits (73), Expect = 0.47
Identities = 18/58 (31%), Positives = 29/58 (50%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E +EE + E E EEE +EE + +E + EE+ E++ E E+ VR
Sbjct: 13 KDEHKEEHKVENEILEEETDEESQHQEPALGHPSYTALEEQLTLAEQKAHENWEKSVR 70
>gnl|CDD|224415 COG1498, SIK1, Protein implicated in ribosomal biogenesis, Nop56p
homolog [Translation, ribosomal structure and
biogenesis].
Length = 395
Score = 33.1 bits (76), Expect = 0.49
Identities = 13/65 (20%), Positives = 20/65 (30%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+ E + + EEE E E E E E E++ E + +
Sbjct: 1 MSLVDFEPFPSDADALEEELLISEGGVSSALEVNLELELIEGEKKLELVVCDTKLGNADS 60
Query: 658 KEEIS 662
EI
Sbjct: 61 AFEIP 65
>gnl|CDD|100810 PRK01194, PRK01194, V-type ATP synthase subunit E; Provisional.
Length = 185
Score = 32.2 bits (73), Expect = 0.51
Identities = 15/53 (28%), Positives = 33/53 (62%), Gaps = 1/53 (1%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+E++I+ I + REE+++E +E + E+ E+E + ++Q +E E++ E
Sbjct: 3 LEDVIKDIEK-SREEKKKEINDEYSKRIEKLEKECDSKIQSIKEYYEKKMRAE 54
>gnl|CDD|224532 COG1617, COG1617, Uncharacterized conserved protein [Function
unknown].
Length = 158
Score = 32.0 bits (73), Expect = 0.51
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 566 KTIRPSIKVWKTSDQDE------IGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEE 619
+ I+ +IK+ + + +P++E R EE E +EE EE E
Sbjct: 81 RQIKDAIKLGGAKKGENFIVAVLVDTPKMEGFKCSELRDFVLEEAEVLRITDEELEEAGE 140
Query: 620 EEEEEEVQE 628
E+ E V E
Sbjct: 141 EDVPELVLE 149
Score = 31.7 bits (72), Expect = 0.61
Identities = 18/68 (26%), Positives = 30/68 (44%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
G+ +I++ I+L + E + + E + E + V EE E +EE EE
Sbjct: 79 GTRQIKDAIKLGGAKKGENFIVAVLVDTPKMEGFKCSELRDFVLEEAEVLRITDEELEEA 138
Query: 644 EEEEEEEE 651
EE+ E
Sbjct: 139 GEEDVPEL 146
>gnl|CDD|224400 COG1483, COG1483, Predicted ATPase (AAA+ superfamily) [General
function prediction only].
Length = 774
Score = 33.2 bits (76), Expect = 0.51
Identities = 23/83 (27%), Positives = 34/83 (40%), Gaps = 4/83 (4%)
Query: 580 QDEIGSPR-IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEV---QEEEEEEEE 635
D+ R +E ++ I G R E E EE EEE V E + +E
Sbjct: 576 VDKDVKRRLLELLLGFIASGRRTYSNTVLVEYEAEEILSILEEETARVLACDEVMKTIKE 635
Query: 636 EEEEEEEEEEEEEEEEEVRGGGK 658
+ ++ E+ EE E E + G K
Sbjct: 636 KYKKYGEDVEEISENEVRKIGEK 658
>gnl|CDD|222508 pfam14033, DUF4246, Protein of unknown function (DUF4246). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and fungi.
Proteins in this family are typically between 392 and
644 amino acids in length.
Length = 496
Score = 33.0 bits (76), Expect = 0.51
Identities = 14/42 (33%), Positives = 22/42 (52%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E +E+E EE + E E+E+ E+ E EE + EE +
Sbjct: 262 EYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
Score = 32.2 bits (74), Expect = 0.88
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE-EEEVQEEEEEEEEEEEEEEEEEE 645
RIE E +E+E EE + E E+E+ E+ E ++E + EE + E
Sbjct: 255 RIE-----YYGVEYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKAIHPEPG 309
Query: 646 EEEEEEEVRGGGKEEISL 663
E ++ + L
Sbjct: 310 TFFPYEPTPPHIEKTVDL 327
Score = 29.1 bits (66), Expect = 9.9
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
R E E +E+E EE + E E+E+ E EE + EE +
Sbjct: 254 LRIEYYGVEYHPKEKEPEEPKPEPGEDEDYEDYWERLEEYLDWREERRKA 303
>gnl|CDD|113514 pfam04747, DUF612, Protein of unknown function, DUF612. This
family includes several uncharacterized proteins from
Caenorhabditis elegans.
Length = 517
Score = 33.1 bits (74), Expect = 0.53
Identities = 16/59 (27%), Positives = 35/59 (59%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
Q+ + E E++ ++ E+E E E ++ QEEE ++ + E+E ++E+E++E +
Sbjct: 81 QIAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEAD 139
Score = 33.1 bits (74), Expect = 0.60
Identities = 14/49 (28%), Positives = 34/49 (69%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
R E E ++ +EEE ++ + E+E +Q+E+E++E + ++ + E+++E+
Sbjct: 103 RRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEK 151
Score = 31.6 bits (70), Expect = 1.5
Identities = 16/72 (22%), Positives = 41/72 (56%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + + E+E E E ++ +EEE ++ + E + ++E+E++E + ++ + E++
Sbjct: 89 EQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKK 148
Query: 649 EEEEVRGGGKEE 660
+E+ V+ E+
Sbjct: 149 KEKAVKAEKAEK 160
Score = 31.2 bits (69), Expect = 2.2
Identities = 13/52 (25%), Positives = 38/52 (73%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+EEE ++ + E+E ++E+E++E ++++ + E+++E+ + E+ E+ E+ ++
Sbjct: 115 QEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKK 166
Score = 30.8 bits (68), Expect = 2.5
Identities = 14/60 (23%), Positives = 35/60 (58%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
I + E++ ++ E+E E E ++ +EEE ++ + E+E ++E+E++E +++
Sbjct: 82 IAKDHEAEQKVNAKKAAEKEARRAEAEAKKRAAQEEEHKQWKAEQERIQKEQEKKEADLK 141
Score = 30.8 bits (68), Expect = 2.7
Identities = 14/56 (25%), Positives = 38/56 (67%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+R +EEE ++ + E+E ++E+E++E + + + E+++E+ + E+ E+ E+ ++
Sbjct: 111 KRAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKK 166
Score = 30.8 bits (68), Expect = 3.0
Identities = 16/66 (24%), Positives = 40/66 (60%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
R + EE ++ + E+E ++E+E++E + + + E+++E+ + E+ E+ E+ ++
Sbjct: 112 RAAQEEEHKQWKAEQERIQKEQEKKEADLKKLQAEKKKEKAVKAEKAEKAEKTKKASTPA 171
Query: 656 GGKEEI 661
+EEI
Sbjct: 172 PVEEEI 177
>gnl|CDD|222010 pfam13254, DUF4045, Domain of unknown function (DUF4045). This
presumed domain is functionally uncharacterized. This
domain family is found in bacteria and eukaryotes, and
is typically between 384 and 430 amino acids in length.
Length = 414
Score = 32.9 bits (75), Expect = 0.54
Identities = 19/102 (18%), Positives = 34/102 (33%), Gaps = 2/102 (1%)
Query: 562 TNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQL--IRRGEREEEEEEEEEEEEEEEEEEE 619
TN K + P + SP I L R E+ + E+ ++E + E+
Sbjct: 195 TNSFKEVTPVGLMRTPPPGSHSKSPSKSGIPDLPSSRDSEKTKPEKPQQETSSMDTEKSS 254
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+ E + + E+ + EEE + E
Sbjct: 255 APKPRETLDPKSPEKAPPIDTTEEELKSPEASPKESEEASAR 296
>gnl|CDD|227278 COG4942, COG4942, Membrane-bound metallopeptidase [Cell division
and chromosome partitioning].
Length = 420
Score = 33.2 bits (76), Expect = 0.54
Identities = 9/61 (14%), Positives = 17/61 (27%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+ +++ EE E + E E + +E E E + E
Sbjct: 217 SELSADQKKLEELRANESRLKNEIASAEAAAAKAREAAAAAEAAAARARAAEAKRTGETY 276
Query: 653 V 653
Sbjct: 277 K 277
Score = 31.6 bits (72), Expect = 1.3
Identities = 10/73 (13%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+ + I + ++ ++ + E E+ E E+ ++ + ++ EE ++ +
Sbjct: 158 ARAERIDA--LKATLKQLAAVRAEIAAEQAELTTLLSEQRAQQAKLAQLLEERKKTLAQL 215
Query: 638 EEEEEEEEEEEEE 650
E ++++ EE
Sbjct: 216 NSELSADQKKLEE 228
>gnl|CDD|221931 pfam13136, DUF3984, Protein of unknown function (DUF3984). This
family of proteins is functionally uncharacterized. This
family of proteins is found in eukaryotes. Proteins in
this family are typically between 393 and 442 amino
acids in length.
Length = 301
Score = 32.7 bits (75), Expect = 0.55
Identities = 14/63 (22%), Positives = 24/63 (38%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
RR + E+ + + +E+ E E + E E E+E +E E + R
Sbjct: 219 ARRADAEDSRDTVLLGPDFVDEDIRAEMASIDDESFSSLSDSESESEDEIDEAEVQRLTR 278
Query: 655 GGG 657
G
Sbjct: 279 ERG 281
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 33.2 bits (76), Expect = 0.55
Identities = 9/47 (19%), Positives = 19/47 (40%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E +E ++ +E + + E E + V E ++E E +
Sbjct: 878 AAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924
Score = 32.8 bits (75), Expect = 0.77
Identities = 9/50 (18%), Positives = 19/50 (38%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E +E ++ +E + + E EV + E ++E E +
Sbjct: 880 ELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALD 929
Score = 32.4 bits (74), Expect = 0.89
Identities = 7/48 (14%), Positives = 18/48 (37%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+ +E ++ +E + + E E + E ++E E +
Sbjct: 877 LAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924
Score = 30.9 bits (70), Expect = 2.6
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E +E ++ +E + + E E + + E ++E E +
Sbjct: 880 ELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924
Score = 30.5 bits (69), Expect = 3.5
Identities = 9/44 (20%), Positives = 18/44 (40%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E +E ++ +E + E E + + E ++E GG
Sbjct: 880 ELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGG 923
Score = 29.7 bits (67), Expect = 6.1
Identities = 8/45 (17%), Positives = 19/45 (42%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E +E ++ +E + + E E + + E ++E E +
Sbjct: 880 ELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924
Score = 29.4 bits (66), Expect = 9.7
Identities = 8/47 (17%), Positives = 19/47 (40%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E +E ++ +E + + E E + + E ++E E +
Sbjct: 878 AAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGD 924
>gnl|CDD|151173 pfam10669, Phage_Gp23, Protein gp23 (Bacteriophage A118). This is
the highly conserved family of the major tail subunit
protein.
Length = 121
Score = 31.2 bits (70), Expect = 0.57
Identities = 12/54 (22%), Positives = 32/54 (59%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
I R E +EE ++ E E E+ ++E +EE ++ + E++ +++ + ++++
Sbjct: 43 IVRVEMKEERDKMETEREKRDKESKEERDKFISTMNEQQRLMDKQNDMMGQQQQ 96
Score = 30.1 bits (67), Expect = 1.7
Identities = 15/76 (19%), Positives = 41/76 (53%)
Query: 583 IGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
I + RI + +++R +EE ++ E E E+ ++E +EE ++ E++ +++ +
Sbjct: 32 IITKRIWDDSKIVRVEMKEERDKMETEREKRDKESKEERDKFISTMNEQQRLMDKQNDMM 91
Query: 643 EEEEEEEEEEVRGGGK 658
++++ + + GK
Sbjct: 92 GQQQQSIDSLSKSVGK 107
>gnl|CDD|130214 TIGR01144, ATP_synt_b, ATP synthase, F0 subunit b. This model
describes the F1/F0 ATP synthase b subunit in bacteria
only. Scoring just below the trusted cutoff are the
N-terminal domains of Mycobacterial b/delta fusion
proteins and a subunit from an archaeon, Methanosarcina
barkeri, in which the ATP synthase homolog differs in
architecture and is not experimentally confirmed. This
model helps resolve b from the related b' subunit.
Within the family is an example from a
sodium-translocating rather than proton-translocating
ATP synthase [Energy metabolism, ATP-proton motive force
interconversion].
Length = 147
Score = 31.6 bits (72), Expect = 0.58
Identities = 16/64 (25%), Positives = 31/64 (48%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R + I + ER ++E +++ + +E ++E +E+ E + E EE + E
Sbjct: 27 RQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAR 86
Query: 647 EEEE 650
EE E
Sbjct: 87 EERE 90
Score = 28.5 bits (64), Expect = 7.2
Identities = 22/95 (23%), Positives = 39/95 (41%), Gaps = 9/95 (9%)
Query: 570 PSIKVWKTSDQ---DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEE---EEEEEEEEEE 623
P K +T + D + S + + + + +E ++E +E + E
Sbjct: 19 PLAKAIETRQKKIADGLASAERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEIL 78
Query: 624 EEVQEEEEEEEE---EEEEEEEEEEEEEEEEEVRG 655
EE + E EE E + E E E+E+ EE+R
Sbjct: 79 EEAKAEAREEREKIKAQARAEIEAEKEQAREELRK 113
>gnl|CDD|236233 PRK08311, PRK08311, putative RNA polymerase sigma factor SigI;
Reviewed.
Length = 237
Score = 32.1 bits (74), Expect = 0.65
Identities = 22/59 (37%), Positives = 32/59 (54%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+I R+ + +EE+EEE + E E E +EEEE EE EE EE ++E +E
Sbjct: 85 LIDYFRKESKHNLVLSNSDEEDEEENDIEIELSLEEYQEEEENEERREEIEEFKKELKE 143
Score = 30.6 bits (70), Expect = 2.2
Identities = 22/53 (41%), Positives = 31/53 (58%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E + +EE+EEE + E E EE +EEEE EE EE EE ++E +E
Sbjct: 91 KESKHNLVLSNSDEEDEEENDIEIELSLEEYQEEEENEERREEIEEFKKELKE 143
Score = 29.1 bits (66), Expect = 7.4
Identities = 21/54 (38%), Positives = 30/54 (55%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
R E + +EE+EEE + E E + +EEEE EE EE EE ++E +E
Sbjct: 90 RKESKHNLVLSNSDEEDEEENDIEIELSLEEYQEEEENEERREEIEEFKKELKE 143
>gnl|CDD|219922 pfam08595, RXT2_N, RXT2-like, N-terminal. The family represents
the N-terminal region of RXT2-like proteins. In S.
cerevisiae, RXT2 has been demonstrated to be involved in
conjugation with cellular fusion (mating) and invasive
growth. A high throughput localisation study has
localised RXT2 to the nucleus.
Length = 141
Score = 31.2 bits (71), Expect = 0.66
Identities = 7/30 (23%), Positives = 22/30 (73%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
R + + + ++++E++E++EE + E+++E
Sbjct: 45 PRIDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 29.7 bits (67), Expect = 2.4
Identities = 10/49 (20%), Positives = 27/49 (55%), Gaps = 2/49 (4%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
G R +++ R +E+ + ++++E++E++EE E+++E
Sbjct: 28 GYER--DVLSRKRIKFNNPPRIDEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 29.7 bits (67), Expect = 2.5
Identities = 7/27 (25%), Positives = 22/27 (81%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E+ ++ +++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 29.3 bits (66), Expect = 3.7
Identities = 6/27 (22%), Positives = 21/27 (77%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ + ++++E++E++EE + E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
Score = 28.1 bits (63), Expect = 8.8
Identities = 9/33 (27%), Positives = 25/33 (75%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
G+ ++++E++E++EE + E+++E + ++ EE
Sbjct: 52 GDIDDDDEDDEDDEEADAEDDDENPYKLIRLEE 84
Score = 28.1 bits (63), Expect = 9.0
Identities = 7/27 (25%), Positives = 21/27 (77%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEE 633
+E+ + ++++E++E++EE E+++E
Sbjct: 48 DEDGGDIDDDDEDDEDDEEADAEDDDE 74
>gnl|CDD|240576 cd12932, RRP7_like, RRP7 domain ribosomal RNA-processing protein 7
(Rrp7p), ribosomal RNA-processing protein 7 homolog A
(Rrp7A), and similar proteins. This CD corresponds to
the RRP7 domain of Rrp7p and Rrp7A. Rrp7p is encoded by
YCL031C gene from Saccharomyces cerevisiae. It is an
essential yeast protein involved in pre-rRNA processing
and ribosome assembly, and is speculated to be required
for correct assembly of rpS27 into the pre-ribosomal
particle. Rrp7A, also termed gastric cancer antigen
Zg14, is the Rrp7p homolog mainly found in Metazoans.
The cellular function of Rrp7A remains unclear
currently. Both Rrp7p and Rrp7A harbor an N-terminal RNA
recognition motif (RRM), also termed RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), and a
C-terminal RRP7 domain.
Length = 118
Score = 31.1 bits (71), Expect = 0.68
Identities = 17/60 (28%), Positives = 34/60 (56%), Gaps = 12/60 (20%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEE------------EVQEEEEEEEEEEEEEEEEEEEEE 648
EE ++ EEEE+EE +E E +E+ + EE E + +E+E+++++++E
Sbjct: 28 EEFDKREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKE 87
Score = 30.3 bits (69), Expect = 0.99
Identities = 15/57 (26%), Positives = 32/57 (56%), Gaps = 13/57 (22%)
Query: 599 EREEEEEEEEEEEEEEEEEEE-------------EEEEEEVQEEEEEEEEEEEEEEE 642
++ EEEE+EE +E E +E+ EE V+ + +E+E+++++++E
Sbjct: 31 DKREEEEKEEAKEARNEPDEDGFVTVTRGGRKGKTAREEAVEAKAKEKEKKKKKKKE 87
>gnl|CDD|226251 COG3728, XtmA, Phage terminase, small subunit [DNA replication,
recombination, and repair].
Length = 179
Score = 31.7 bits (72), Expect = 0.68
Identities = 17/79 (21%), Positives = 24/79 (30%), Gaps = 6/79 (7%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEE------EEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
I I + E EE+E E E + E E ++ +
Sbjct: 45 PEIKAYIDEKQCETVEEDEVPAYELLKVLTEIALGDIETEAIVQPKDTLPVLTPPVVIAQ 104
Query: 643 EEEEEEEEEEVRGGGKEEI 661
EE EEE E G +
Sbjct: 105 LEEAIEEELEDPVKGSGRL 123
>gnl|CDD|236278 PRK08506, PRK08506, replicative DNA helicase; Provisional.
Length = 472
Score = 32.7 bits (75), Expect = 0.68
Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 6/61 (9%)
Query: 578 SDQDEIGSPRIE---NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
SD E G+ IE +II + R + +E EE+E+E++ ++E +EE Q + EE
Sbjct: 366 SDLRESGA--IEQDADIILFVYRDD-VYKEREEKEKEKKAKKEGKEERRIHFQNKSIEEA 422
Query: 635 E 635
E
Sbjct: 423 E 423
>gnl|CDD|192445 pfam10018, Med4, Vitamin-D-receptor interacting Mediator subunit 4.
Members of this family function as part of the Mediator
(Med) complex, which links DNA-bound transcriptional
regulators and the general transcription machinery,
particularly the RNA polymerase II enzyme. They play a
role in basal transcription by mediating activation or
repression according to the specific complement of
transcriptional regulators bound to the promoter.
Length = 176
Score = 31.6 bits (72), Expect = 0.69
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
+ E + EEEEE + E E + EEE+E + +E +
Sbjct: 135 LLSKEGIEPPGFDPEEEEERKAREAEAKTEEEDEREAQERNQ 176
Score = 30.8 bits (70), Expect = 1.2
Identities = 15/39 (38%), Positives = 21/39 (53%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+E E + EEEEE + E E EEE+E E +E +
Sbjct: 138 KEGIEPPGFDPEEEEERKAREAEAKTEEEDEREAQERNQ 176
Score = 30.5 bits (69), Expect = 1.7
Identities = 13/38 (34%), Positives = 20/38 (52%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
G + EEEEE + E E + EEE+ +E +E +
Sbjct: 139 EGIEPPGFDPEEEEERKAREAEAKTEEEDEREAQERNQ 176
Score = 30.1 bits (68), Expect = 2.8
Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
Query: 595 IRRG-----EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+RRG +E E + EEEEE + E E + EEE+E E +E +
Sbjct: 125 MRRGLLAQSSLLSKEGIEPPGFDPEEEEERKAREAEAKTEEEDEREAQERNQ 176
Score = 29.3 bits (66), Expect = 4.2
Identities = 15/39 (38%), Positives = 22/39 (56%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+E E + EEEEE + E E + EEE+E E +E +
Sbjct: 138 KEGIEPPGFDPEEEEERKAREAEAKTEEEDEREAQERNQ 176
Score = 29.3 bits (66), Expect = 4.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+E E + EEEE ++ E E + EEE+E E +E +
Sbjct: 138 KEGIEPPGFDPEEEEERKAREAEAKTEEEDEREAQERNQ 176
Score = 28.5 bits (64), Expect = 7.1
Identities = 15/39 (38%), Positives = 23/39 (58%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E E + EEEEE + +E E + EEE+E E +E +
Sbjct: 138 KEGIEPPGFDPEEEEERKAREAEAKTEEEDEREAQERNQ 176
>gnl|CDD|151773 pfam11332, DUF3134, Protein of unknown function (DUF3134). This
family of proteins with unknown function appears to be
restricted to Cyanobacteria.
Length = 72
Score = 30.0 bits (68), Expect = 0.69
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E +E E EEEEE E+ ++++ +++++E+
Sbjct: 36 AREPQESPEVSTEEEEEISELIGDDDDYYDDDDDED 71
Score = 29.7 bits (67), Expect = 0.78
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E +E E EEEEE+ E ++++ +++++E+
Sbjct: 36 AREPQESPEVSTEEEEEISELIGDDDDYYDDDDDED 71
Score = 29.7 bits (67), Expect = 0.87
Identities = 10/36 (27%), Positives = 22/36 (61%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E +E E EEEEE E + ++++ +++++E+
Sbjct: 36 AREPQESPEVSTEEEEEISELIGDDDDYYDDDDDED 71
Score = 29.3 bits (66), Expect = 0.95
Identities = 11/36 (30%), Positives = 22/36 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
RE +E E EEEEE E ++++ +++++E+
Sbjct: 36 AREPQESPEVSTEEEEEISELIGDDDDYYDDDDDED 71
Score = 27.7 bits (62), Expect = 3.6
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 583 IGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ + +++ + R E +E E EEEEE E ++ +++++E+
Sbjct: 16 LPLKQEPSLLDWLEASGRLIAREPQESPEVSTEEEEEISELIGDDDDYYDDDDDED 71
Score = 27.7 bits (62), Expect = 4.3
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E +E E +EEEE E ++++ +++++E+
Sbjct: 36 AREPQESPEVSTEEEEEISELIGDDDDYYDDDDDED 71
Score = 27.3 bits (61), Expect = 6.1
Identities = 10/36 (27%), Positives = 21/36 (58%), Gaps = 3/36 (8%)
Query: 620 EEEEEEVQEEEEEEEEEEEE---EEEEEEEEEEEEE 652
E +E E EEEEE E ++++ +++++E+
Sbjct: 36 AREPQESPEVSTEEEEEISELIGDDDDYYDDDDDED 71
>gnl|CDD|215521 PLN02967, PLN02967, kinase.
Length = 581
Score = 32.7 bits (74), Expect = 0.69
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
+ EEE+ E++ + + ++ +E+ E++ E E + EE E E E EEE ++
Sbjct: 126 SDVEEEKTEKKVRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDD 185
Query: 658 KEEIS 662
E+IS
Sbjct: 186 GEDIS 190
Score = 31.6 bits (71), Expect = 1.8
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+R+ + ++ +E+ E++ E E + EE E V E E EEE + E+++ E+
Sbjct: 137 VRKRRKVKKMDEDVEDQGSESEVSDVEESEFVTSLENESEEELDLEKDDGED 188
>gnl|CDD|235861 PRK06782, PRK06782, flagellar motor switch protein; Reviewed.
Length = 528
Score = 32.9 bits (75), Expect = 0.70
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+EEEE EE E E+ E V + E +E ++ E +
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 32.5 bits (74), Expect = 0.79
Identities = 14/40 (35%), Positives = 20/40 (50%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+EEEE EE E E+ E VQ E +E ++ E +
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 31.7 bits (72), Expect = 1.6
Identities = 13/40 (32%), Positives = 20/40 (50%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+EEEE EE E E+V E + E +E ++ E +
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 31.3 bits (71), Expect = 1.9
Identities = 13/48 (27%), Positives = 23/48 (47%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
++L+ +EEEE EE E E+ E + E +E ++ E +
Sbjct: 409 VRLLLYPMVKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 29.8 bits (67), Expect = 5.1
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+EEEE EE E E+ E + E +E ++ E +
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 29.8 bits (67), Expect = 5.9
Identities = 12/40 (30%), Positives = 20/40 (50%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+EEEE EE E E+ V+ + E +E ++ E +
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEPVYMDT 456
Score = 29.4 bits (66), Expect = 8.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+EEEE EE E E+ E + E +E ++ E
Sbjct: 417 VKEEEEIATEEIEPEKVVEPVVQPIEFKEVKQMEP 451
>gnl|CDD|236842 PRK11091, PRK11091, aerobic respiration control sensor protein
ArcB; Provisional.
Length = 779
Score = 33.0 bits (76), Expect = 0.70
Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 7/50 (14%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+NI QL +E E E+ EE +E E+ + E++E EE + E E+
Sbjct: 110 DNIAQL-------NQEIAEREKAEEARQEAFEQLKNEIKEREETQIELEQ 152
>gnl|CDD|234801 PRK00591, prfA, peptide chain release factor 1; Validated.
Length = 359
Score = 32.4 bits (75), Expect = 0.72
Identities = 23/57 (40%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+E I++ R E ++ +E+ EE +E EEE + E E +EE +E EE EE EEE
Sbjct: 43 ELEPIVEAYR--EYKQAQEDLEEAKEMLEEESDPEMREMAKEELKELEERLEELEEE 97
>gnl|CDD|216110 pfam00771, FHIPEP, FHIPEP family.
Length = 658
Score = 32.8 bits (76), Expect = 0.75
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
+ + +R+E E E E E E E EEE +
Sbjct: 294 RLSKRKRQEAAEAEAEAAEAEAAAEPEEESWD 325
>gnl|CDD|222259 pfam13608, Potyvirid-P3, Protein P3 of Potyviral polyprotein. This
is the P3 protein section of the Potyviridae
polyproteins. The function is not known except that the
protein is essential to viral survival.
Length = 445
Score = 32.5 bits (75), Expect = 0.77
Identities = 26/69 (37%), Positives = 33/69 (47%), Gaps = 5/69 (7%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEE---EEEEEEEEEEEVQEEEEEE--EEEEEEEEEEE 644
I R + E EE+EE+EE+E + E + EEE E EE+ E E
Sbjct: 266 VSIINEHRKLKREAAEEKEEKEEKEIRKLYLYSKLEGKLPTEEEFLEYIEEKNPELLETA 325
Query: 645 EEEEEEEEV 653
EE EEEEV
Sbjct: 326 EELIEEEEV 334
>gnl|CDD|220172 pfam09309, FCP1_C, FCP1, C-terminal. The C-terminal domain of
FCP-1 is required for interaction with the carboxy
terminal domain of RAP74. Interaction relies extensively
on van der Waals contacts between hydrophobic residues
situated within alpha-helices in both domains.
Length = 263
Score = 32.3 bits (73), Expect = 0.81
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
RG + + EE+EE+ E E E E+EE E +E E E
Sbjct: 214 RGHKRKLNEEDEEDAESESSFESSNEDEEGSSSEADEMAAALEAE 258
Score = 31.9 bits (72), Expect = 0.86
Identities = 17/80 (21%), Positives = 28/80 (35%), Gaps = 15/80 (18%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE---------------EEEEEEE 640
++ EEE+E+ + +++ E +E E EE+EE+
Sbjct: 168 KKPPGNEEEQEQAPQPRKQQPPGPRREPDEGTPSSSERSNIGGRGPRGHKRKLNEEDEED 227
Query: 641 EEEEEEEEEEEEVRGGGKEE 660
E E E E G E
Sbjct: 228 AESESSFESSNEDEEGSSSE 247
Score = 30.0 bits (67), Expect = 4.1
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
R +R+ EE+EE+ E E E E+EE E +E E E
Sbjct: 214 RGHKRKLNEEDEEDAESESSFESSNEDEEGSSSEADEMAAALEAE 258
Score = 29.6 bits (66), Expect = 4.9
Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 19/82 (23%)
Query: 597 RGEREEEEEEEEEEEEEEEE----EEEEEEEEEVQEEEEE---------------EEEEE 637
++ EEE+E+ + + E +E E EE+E
Sbjct: 166 EKKKPPGNEEEQEQAPQPRKQQPPGPRREPDEGTPSSSERSNIGGRGPRGHKRKLNEEDE 225
Query: 638 EEEEEEEEEEEEEEEVRGGGKE 659
E+ E E E E+ G E
Sbjct: 226 EDAESESSFESSNEDEEGSSSE 247
Score = 29.2 bits (65), Expect = 6.7
Identities = 11/53 (20%), Positives = 24/53 (45%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
E ++ + E+++ EEE+E+ + +++ E +E E GG
Sbjct: 158 EGSDDSDSEKKKPPGNEEEQEQAPQPRKQQPPGPRREPDEGTPSSSERSNIGG 210
>gnl|CDD|178867 PRK00106, PRK00106, hypothetical protein; Provisional.
Length = 535
Score = 32.5 bits (74), Expect = 0.81
Identities = 17/58 (29%), Positives = 32/58 (55%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
RG+ E + E ++ + E + ++E E +EE + EE E+E + E +E ++ E R
Sbjct: 48 RGKAERDAEHIKKTAKRESKALKKELLLEAKEEARKYREEIEQEFKSERQELKQIESR 105
>gnl|CDD|233914 TIGR02538, type_IV_pilB, type IV-A pilus assembly ATPase PilB.
This model describes a protein of type IV pilus
biogenesis designated PilB in Pseudomonas aeruginosa but
PilF in Neisseria gonorrhoeae; the more common usage,
reflected here, is PilB. This protein is an ATPase
involved in protein export for pilin assembly and is
closely related to GspE (TIGR02533) of type II
secretion, also called the main terminal branch of the
general secretion pathway. Note that type IV pilus
systems are often divided into type IV-A and IV-B, with
the latter group including bundle-forming pilus,
mannose-sensitive hemagglutinin, etc. Members of this
family are found in type IV-A systems [Cell envelope,
Surface structures, Protein fate, Protein and peptide
secretion and trafficking].
Length = 564
Score = 32.7 bits (75), Expect = 0.82
Identities = 8/51 (15%), Positives = 24/51 (47%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+ LI + + +E +E+ + EE + + E ++ E++ +++
Sbjct: 128 LSALIEKYYGGSDSLAKELGDEDIGDLEELDVDAIDDEGPDDIEQDAVDDD 178
>gnl|CDD|217356 pfam03078, ATHILA, ATHILA ORF-1 family. ATHILA is a group of
Arabidopsis thaliana retrotransposons belonging to the
Ty3/gypsy family of the long terminal repeat (LTR) class
of eukaryotic retrotransposons. The central region of
ATHILA retrotransposons contains two or three open
reading frames (ORFs). This family represents the ORF1
product. The function of ORF1 is unknown.
Length = 456
Score = 32.3 bits (73), Expect = 0.83
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
+E ++ E EE EE+V EE+E++E E E+ + EE K H
Sbjct: 359 SKEILGATDDIEHTEEATEEDVDEEDEDDEAELEKFDTSMYHFEEHVPPARESKSLSEAH 418
Score = 31.5 bits (71), Expect = 1.7
Identities = 21/100 (21%), Positives = 39/100 (39%), Gaps = 8/100 (8%)
Query: 560 PNTNKLKTIRPSIKVWKTSDQDEIG-SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEE 618
K + P ++ + D I P E + ++ E EE EE+ +EE
Sbjct: 331 SEDGKSNILLPCKEITTIREGDNIDFKPSKEILGA-------TDDIEHTEEATEEDVDEE 383
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+E++E E+++ + EE E + E + K
Sbjct: 384 DEDDEAELEKFDTSMYHFEEHVPPARESKSLSEAHKNNSK 423
>gnl|CDD|191365 pfam05756, S-antigen, S-antigen protein. S-antigens are heat
stable proteins that are found in the blood of
individuals infected with malaria.
Length = 94
Score = 30.3 bits (68), Expect = 0.84
Identities = 14/44 (31%), Positives = 25/44 (56%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ G+ ++ E+ +EE E E ++EE+ EE +EE E + E
Sbjct: 50 KNGKGQKYEDLQEEGEGENDDEEDSNSEESNNDEENGLIEGQGE 93
Score = 29.5 bits (66), Expect = 1.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E++QEE E E ++EE+ EE +EE + G E
Sbjct: 58 EDLQEEGEGENDDEEDSNSEESNNDEENGLIEGQGE 93
Score = 28.4 bits (63), Expect = 3.4
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E+ +EE E E ++EE+ EE +EE E + E
Sbjct: 58 EDLQEEGEGENDDEEDSNSEESNNDEENGLIEGQGE 93
Score = 28.4 bits (63), Expect = 3.9
Identities = 15/52 (28%), Positives = 26/52 (50%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+R G + + ++ E+ +EE E E ++EE EE +EE E + E
Sbjct: 42 LRSGFFNSKNGKGQKYEDLQEEGEGENDDEEDSNSEESNNDEENGLIEGQGE 93
>gnl|CDD|237869 PRK14962, PRK14962, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 472
Score = 32.4 bits (74), Expect = 0.84
Identities = 21/74 (28%), Positives = 41/74 (55%), Gaps = 4/74 (5%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
R +E + EE+ + +++E+ +EE + +EE++E+ E E+ +E EE+ KE
Sbjct: 333 RFSSPNVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEEL----KE 388
Query: 660 EISLHFYVLYVLSK 673
+ L +V LS+
Sbjct: 389 KGDLSIFVALSLSE 402
Score = 29.3 bits (66), Expect = 8.5
Identities = 15/51 (29%), Positives = 33/51 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+E + EE+ + +++E+++EE + +EE++E+ E E+ +E EE +E
Sbjct: 338 NVQENDVEEKNDNSNVQQKEKKKEESKAKEEKQEDIEFEKRFKELMEELKE 388
>gnl|CDD|216531 pfam01496, V_ATPase_I, V-type ATPase 116kDa subunit family. This
family consists of the 116kDa V-type ATPase (vacuolar
(H+)-ATPases) subunits, as well as V-type ATP synthase
subunit i. The V-type ATPases family are proton pumps
that acidify intracellular compartments in eukaryotic
cells for example yeast central vacuoles,
clathrin-coated and synaptic vesicles. They have
important roles in membrane trafficking processes. The
116kDa subunit (subunit a) in the V-type ATPase is part
of the V0 functional domain responsible for proton
transport. The a subunit is a transmembrane glycoprotein
with multiple putative transmembrane helices it has a
hydrophilic amino terminal and a hydrophobic carboxy
terminal. It has roles in proton transport and assembly
of the V-type ATPase complex. This subunit is encoded by
two homologous gene in yeast VPH1 and STV1.
Length = 707
Score = 32.4 bits (74), Expect = 0.84
Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 564 KLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEE------EEEEE 617
KL+ + IK +D G P + + + E + E E +E E E+E
Sbjct: 39 KLRKLESKIKKLGIPLKDTGGKPDVPPSKEFLDLEEEILDLEAEIKEVEENLESLEKEIN 98
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E EE + EE+ +E EE E + + + +RG ++
Sbjct: 99 ELEEWLNVLDEEKSFLDENLEELSELSNLDIDFKYLRGAEGLKLG 143
>gnl|CDD|150467 pfam09803, DUF2346, Uncharacterized conserved protein (DUF2346).
Members of this family of proteins have no known
function.
Length = 80
Score = 29.8 bits (67), Expect = 0.85
Identities = 11/42 (26%), Positives = 21/42 (50%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+R E E+ +E E+ +E E+ E + EE E+++
Sbjct: 39 KRELYPPENEQHRKELEDFKERLREKHEARLLRAMEEAEQKK 80
Score = 27.5 bits (61), Expect = 6.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E E+ +E E+ +E ++E+ E EE E+++
Sbjct: 46 ENEQHRKELEDFKERLREKHEARLLRAMEEAEQKK 80
>gnl|CDD|221891 pfam13007, LZ_Tnp_IS66, Transposase C of IS166 homeodomain. This
is a leucine-zipper-like or homeodomain-like region of
transposase TnpC of insertion element IS66.
Length = 77
Score = 29.6 bits (67), Expect = 0.86
Identities = 9/37 (24%), Positives = 12/37 (32%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
+L R + EE E + E E E E
Sbjct: 21 KLSAREQLSLFLEELEADAAALEAEAEAAAAPEQPAA 57
>gnl|CDD|221244 pfam11818, DUF3340, C-terminal domain of tail specific protease
(DUF3340). This presumed domain is found at the
C-terminus of tail specific proteases. Its function is
unknown. This family is found in bacteria and
eukaryotes. This presumed domain is typically between 88
to 187 amino acids in length.
Length = 139
Score = 31.0 bits (71), Expect = 0.89
Identities = 12/45 (26%), Positives = 26/45 (57%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E E + E EE+E++ + E E ++ EE + ++ +++EE +
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 29.1 bits (66), Expect = 4.0
Identities = 11/45 (24%), Positives = 25/45 (55%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E E + E EE+E++ + E + + EE + ++ +++EE +
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPD 121
Score = 28.3 bits (64), Expect = 7.5
Identities = 11/46 (23%), Positives = 24/46 (52%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E + E EE+E++ + E + EE + ++ +++EE +
Sbjct: 77 EAERKAEREEDEKKRLKRENERRKALGEEPLKSLDDLPKDKEEPDA 122
>gnl|CDD|203903 pfam08312, cwf21, cwf21 domain. The cwf21 family is involved in
mRNA splicing. It has been isolated as a subcomplex of
the splicosome in Schizosaccharomyces pombe. The
function of the cwf21 domain is to bind directly to the
spliceosomal protein Prp8. Mutations in the cwf21 domain
prevent Prp8 from binding. The structure of this domain
has recently been solved which shows this domain to be
composed of two alpha helices.
Length = 46
Score = 28.7 bits (65), Expect = 0.89
Identities = 13/32 (40%), Positives = 19/32 (59%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
E ++ EE+ EEE EE+V E ++ EE E
Sbjct: 15 ELRDKLEEQGLSEEEIEEKVDELRKKLLEELE 46
Score = 27.5 bits (62), Expect = 2.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E ++ EE+ EEE++E+ +E ++ EE E
Sbjct: 15 ELRDKLEEQGLSEEEIEEKVDELRKKLLEELE 46
>gnl|CDD|192481 pfam10197, Cir_N, N-terminal domain of CBF1 interacting
co-repressor CIR. This is a 45 residue conserved region
at the N-terminal end of a family of proteins referred
to as CIRs (CBF1-interacting co-repressors). CBF1
(centromere-binding factor 1) acts as a transcription
factor that causes repression by binding specifically to
GTGGGAA motifs in responsive promoters, and it requires
CIR as a co-repressor. CIR binds to histone deacetylase
and to SAP30 and serves as a linker between CBF1 and the
histone deacetylase complex.
Length = 37
Score = 28.4 bits (64), Expect = 0.92
Identities = 12/27 (44%), Positives = 19/27 (70%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E+V E E++ EE+++ EE +E EEE
Sbjct: 11 EKVWEAEQKALEEQKKIEELRKEIEEE 37
Score = 28.4 bits (64), Expect = 0.99
Identities = 10/23 (43%), Positives = 18/23 (78%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEE 633
E E++ EE+++ EE+++E EEE
Sbjct: 15 EAEQKALEEQKKIEELRKEIEEE 37
Score = 27.6 bits (62), Expect = 2.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEE 632
E E++ EE+++ EE +E EEE
Sbjct: 15 EAEQKALEEQKKIEELRKEIEEE 37
Score = 26.8 bits (60), Expect = 3.2
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEE 621
E E++ EE+++ EE +E EEE
Sbjct: 15 EAEQKALEEQKKIEELRKEIEEE 37
Score = 26.8 bits (60), Expect = 4.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEE 623
E E++ EE+++ EE +E EEE
Sbjct: 15 EAEQKALEEQKKIEELRKEIEEE 37
Score = 26.8 bits (60), Expect = 4.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEE 624
E E++ EE+++ EE +E EEE
Sbjct: 15 EAEQKALEEQKKIEELRKEIEEE 37
Score = 26.8 bits (60), Expect = 4.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEE 625
E E++ EE+++ EE +E EEE
Sbjct: 15 EAEQKALEEQKKIEELRKEIEEE 37
Score = 26.8 bits (60), Expect = 4.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEEE 651
E E++ EE+++ EE +E EEE
Sbjct: 15 EAEQKALEEQKKIEELRKEIEEE 37
Score = 26.8 bits (60), Expect = 4.0
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 630 EEEEEEEEEEEEEEEEEEEEEEE 652
E E++ EE+++ EE +E EEE
Sbjct: 15 EAEQKALEEQKKIEELRKEIEEE 37
Score = 26.4 bits (59), Expect = 4.2
Identities = 9/23 (39%), Positives = 17/23 (73%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEE 629
E E++ EE+++ EE +E++EE
Sbjct: 15 EAEQKALEEQKKIEELRKEIEEE 37
>gnl|CDD|148790 pfam07376, Prosystemin, Prosystemin. This family consists of
several plant specific prosystemin proteins. Prosystemin
is the precursor protein of the 18 amino acid wound
signal systemin which activates systemic defence in
plant leaves against insect herbivores.
Length = 193
Score = 31.6 bits (70), Expect = 0.92
Identities = 29/121 (23%), Positives = 61/121 (50%), Gaps = 11/121 (9%)
Query: 551 EWQSLWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEE 610
E ++ ++ N + P ++ + D+ E + E I + I + E ++ +E+ + E
Sbjct: 35 EKETPSQDIKNKDDDAQEIPKVEHEEGGDEKEKIIEK-ETISKCIIKIEGDDAQEKIKVE 93
Query: 611 EEEEEEEEEE--EEEEEVQE--------EEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EEEE E+E+ E+E Q+ +E+ + E EE+ +E+E ++ ++ G +E
Sbjct: 94 YEEEECEKEKIVEKETPSQDIGNKGDDAQEKPKVEHEEDGDEKETPSQDIIKIEGEDAQE 153
Query: 661 I 661
I
Sbjct: 154 I 154
Score = 29.2 bits (64), Expect = 4.9
Identities = 21/84 (25%), Positives = 44/84 (52%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ +E G + + I + + E ++ +E+ + E EEEE E+E++ E+E ++
Sbjct: 57 EHEEGGDEKEKIIEKETISKCIIKIEGDDAQEKIKVEYEEEECEKEKIVEKETPSQDIGN 116
Query: 639 EEEEEEEEEEEEEEVRGGGKEEIS 662
+ ++ +E+ + E E G KE S
Sbjct: 117 KGDDAQEKPKVEHEEDGDEKETPS 140
>gnl|CDD|114015 pfam05266, DUF724, Protein of unknown function (DUF724). This
family contains several uncharacterized proteins found
in Arabidopsis thaliana and other plants. This region is
often found associated with Agenet domains and may
contain coiled-coil.
Length = 190
Score = 31.7 bits (72), Expect = 0.92
Identities = 16/68 (23%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 587 RIENIIQL-IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
R+ ++ L + ++ EE + E+E E+E +E + E + E + E + + +E+
Sbjct: 94 RLNKLLSLKDDQTKKLEERKGLEKEIAEKEISRQELDSEIAELERKILELQRQAALLKEK 153
Query: 646 EEEEEEEV 653
+E E++E+
Sbjct: 154 KEAEDKEI 161
>gnl|CDD|184899 PRK14906, PRK14906, DNA-directed RNA polymerase subunit beta'/alpha
domain fusion protein; Provisional.
Length = 1460
Score = 32.5 bits (74), Expect = 0.94
Identities = 16/66 (24%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
Query: 578 SDQDEIGSPRIENIIQLIR-RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+D +E+ + R I R + E++E ++ ++E EE EV + EE E
Sbjct: 159 ADLEELDAERDRLIEATRRLSVDYVPEDDEFVDDIGDDERLTAEEVRAEVADIYEEYNER 218
Query: 637 EEEEEE 642
+ E
Sbjct: 219 KALRRE 224
Score = 31.0 bits (70), Expect = 2.8
Identities = 16/71 (22%), Positives = 34/71 (47%), Gaps = 5/71 (7%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE-----EEEEEEEEEEEEEEEEE 645
II + + REE+ ++ +E + EE + E + ++ + E++E ++ ++
Sbjct: 137 IITSVDKEAREEDADDLRDELAADLEELDAERDRLIEATRRLSVDYVPEDDEFVDDIGDD 196
Query: 646 EEEEEEEVRGG 656
E EEVR
Sbjct: 197 ERLTAEEVRAE 207
Score = 30.2 bits (68), Expect = 4.3
Identities = 13/56 (23%), Positives = 23/56 (41%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
ER+ E + E++E ++ +E EE E + EE E + +R
Sbjct: 167 ERDRLIEATRRLSVDYVPEDDEFVDDIGDDERLTAEEVRAEVADIYEEYNERKALR 222
>gnl|CDD|204870 pfam12282, H_kinase_N, Signal transduction histidine kinase. This
domain is found in bacteria. This domain is about 150
amino acids in length. This domain is found associated
with pfam07568, pfam08448, pfam02518. This domain has a
single completely conserved residue P that may be
functionally important. This family is mostly annotated
as a histidine kinase involved in signal transduction
but there is little published evidence to support this.
Length = 146
Score = 31.0 bits (71), Expect = 0.94
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 503 FMWCPSHCGIKGNELVDVAAKNPTTGTTPFK 533
F+W P+ G+ V VA P+TG T +K
Sbjct: 39 FLWVPTK---DGDSAVVVAQARPSTGPTLYK 66
Score = 29.5 bits (67), Expect = 2.9
Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 428 FMWCPSHCGIKGNEIVDVAAKNPTTGTTPFK 458
F+W P+ G+ V VA P+TG T +K
Sbjct: 39 FLWVPTK---DGDSAVVVAQARPSTGPTLYK 66
>gnl|CDD|225468 COG2916, Hns, DNA-binding protein H-NS [General function prediction
only].
Length = 128
Score = 30.9 bits (70), Expect = 0.95
Identities = 15/53 (28%), Positives = 24/53 (45%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+ L E+EE+ +E +EEE E EE +E+ E ++ EE
Sbjct: 16 YLELLEEMLEKEEQVVQERQEEEAAAIAEIEERQEKYGTIRELLIKDGITPEE 68
Score = 29.0 bits (65), Expect = 4.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E+EE+ +E +EEE E EE QE+ E ++ EE
Sbjct: 25 EKEEQVVQERQEEEAAAIAEIEERQEKYGTIRELLIKDGITPEE 68
Score = 29.0 bits (65), Expect = 4.1
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE E+EE+ +E +EEE E++E +E+ E ++ EE
Sbjct: 21 EEMLEKEEQVVQERQEEEAAAIAEIEERQEKYGTIRELLIKDGITPEE 68
Score = 28.2 bits (63), Expect = 7.5
Identities = 16/38 (42%), Positives = 22/38 (57%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
EE E+EE+ VQE +EEE E EE +E+ E+
Sbjct: 21 EEMLEKEEQVVQERQEEEAAAIAEIEERQEKYGTIREL 58
>gnl|CDD|216546 pfam01516, Orbi_VP6, Orbivirus helicase VP6. The VP6 protein a
minor protein in the core of the virion is probably the
viral helicase.
Length = 322
Score = 32.0 bits (72), Expect = 0.95
Identities = 13/51 (25%), Positives = 32/51 (62%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E E +E+E ++E+ +E+ + + E E++++ +EE ++E E+ + R
Sbjct: 26 DWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDASVDRR 76
Score = 31.2 bits (70), Expect = 1.8
Identities = 16/62 (25%), Positives = 33/62 (53%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E +E+E ++E+ +E+ + E Q+++ +EE ++E E+ + EV G +
Sbjct: 29 ESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDASVDRRTHTEVGSGSSAK 88
Query: 661 IS 662
S
Sbjct: 89 GS 90
Score = 30.8 bits (69), Expect = 2.2
Identities = 14/57 (24%), Positives = 34/57 (59%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+L +R + + E E +E+E ++E+ +E+ + E E++++ +EE ++E E+
Sbjct: 14 ELKQRQIQINLVDWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
Score = 30.4 bits (68), Expect = 3.4
Identities = 15/49 (30%), Positives = 30/49 (61%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
I L+ E E +E+E ++E+ +E+ + E E+ Q+ +EE ++E E+
Sbjct: 22 INLVDWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
Score = 29.7 bits (66), Expect = 5.3
Identities = 13/48 (27%), Positives = 31/48 (64%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
N++ GE +E+E ++E+ +E+ + E E++++ +EE ++E E+
Sbjct: 23 NLVDWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETED 70
Score = 29.7 bits (66), Expect = 5.6
Identities = 12/51 (23%), Positives = 29/51 (56%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ E E +E+E ++E+ +E+ E E++++ +EE ++E E+ +
Sbjct: 26 DWFESGESKEKEPKDEDGQEQRISDGEGEQKQKGGKEESDKETEDASVDRR 76
Score = 28.9 bits (64), Expect = 8.9
Identities = 10/44 (22%), Positives = 26/44 (59%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE ++ + ++ + E E +E+E ++E+ +E+ G G+++
Sbjct: 13 EELKQRQIQINLVDWFESGESKEKEPKDEDGQEQRISDGEGEQK 56
>gnl|CDD|221586 pfam12457, TIP_N, Tuftelin interacting protein N terminal. This
domain family is found in eukaryotes, and is typically
between 99 and 114 amino acids in length. The family is
found in association with pfam08697, pfam01585. There
are two completely conserved residues (G and F) that may
be functionally important. TIP is involved in enamel
assembly by interacting with one of the major proteins
responsible for biomineralisation of enamel - tuftelin.
Length = 106
Score = 30.4 bits (69), Expect = 0.96
Identities = 9/26 (34%), Positives = 21/26 (80%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E EE +E+E E+++E +E+++E++
Sbjct: 81 KEPEEDDKEDESEDDDESDEDDDEDD 106
Score = 30.0 bits (68), Expect = 1.1
Identities = 10/31 (32%), Positives = 26/31 (83%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
I++ +E EE+++E+E E+++E +E+++E++
Sbjct: 76 IKQAAKEPEEDDKEDESEDDDESDEDDDEDD 106
Score = 29.6 bits (67), Expect = 1.8
Identities = 9/26 (34%), Positives = 23/26 (88%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E EE+++E+E E+++E +E+++E++
Sbjct: 81 KEPEEDDKEDESEDDDESDEDDDEDD 106
Score = 29.3 bits (66), Expect = 2.3
Identities = 9/26 (34%), Positives = 22/26 (84%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E EE+++E+E E+++E +E+++E+
Sbjct: 80 AKEPEEDDKEDESEDDDESDEDDDED 105
Score = 28.1 bits (63), Expect = 5.9
Identities = 8/26 (30%), Positives = 23/26 (88%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEE 649
+E +E+++E+E E+++E +E+++E++
Sbjct: 81 KEPEEDDKEDESEDDDESDEDDDEDD 106
Score = 27.3 bits (61), Expect = 9.1
Identities = 9/26 (34%), Positives = 20/26 (76%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEE 651
Q +E EE+++E+E E+++E +E++
Sbjct: 77 KQAAKEPEEDDKEDESEDDDESDEDD 102
>gnl|CDD|149343 pfam08229, SHR3_chaperone, ER membrane protein SH3. This family of
proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). SH3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of SH3, AAPs are retained in the ER.
Length = 196
Score = 31.5 bits (72), Expect = 0.96
Identities = 11/36 (30%), Positives = 18/36 (50%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
E ++ + EE EE E +EEE + E++E
Sbjct: 157 AEWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 30.0 bits (68), Expect = 2.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E ++ + EE EE E +EEE E E + K++
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 30.0 bits (68), Expect = 3.4
Identities = 12/39 (30%), Positives = 17/39 (43%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E ++ EE EE E +EEE E E+ K+
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKKKK 196
Score = 29.2 bits (66), Expect = 5.6
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 28.8 bits (65), Expect = 6.2
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 28.8 bits (65), Expect = 7.1
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 28.8 bits (65), Expect = 7.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E ++ + EE EE E +EEE E E++E
Sbjct: 158 EWKDAKLLEEFAAEEAEAAAAAKEEESAEGEKKES 192
Score = 28.5 bits (64), Expect = 8.1
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
++ + EE EE E +EEE G KE
Sbjct: 160 KDAKLLEEFAAEEAEAAAAAKEEESAEGEKKESKK 194
>gnl|CDD|235600 PRK05771, PRK05771, V-type ATP synthase subunit I; Validated.
Length = 646
Score = 32.2 bits (74), Expect = 0.97
Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 10/75 (13%)
Query: 589 ENIIQLIRRGEREEEEEEEEE------EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE-- 640
+ + + +++ E E EEE E +EE EE E+E E + EE +E ++ EE
Sbjct: 191 DEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKELAKKYLEELL 250
Query: 641 --EEEEEEEEEEEEV 653
E E E E E
Sbjct: 251 ALYEYLEIELERAEA 265
Score = 31.1 bits (71), Expect = 2.2
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEE-EEEEEEEEEEVQEEEEEEEEEEEE 639
+E G+P +LIR + E EE E+E E EE +E ++ EE+ E E E E
Sbjct: 208 EEEGTPS-----ELIREIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELER 262
Query: 640 EE 641
E
Sbjct: 263 AE 264
Score = 30.7 bits (70), Expect = 3.3
Identities = 21/53 (39%), Positives = 27/53 (50%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+E +E EEE ++ E E EEE E E +EE EE E+E E EE
Sbjct: 185 VLKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEE 237
Score = 30.7 bits (70), Expect = 3.5
Identities = 20/55 (36%), Positives = 29/55 (52%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
+E +E EEE ++ E E++EE E E +EE EE E+E E + KE
Sbjct: 186 LKELSDEVEEELKKLGFERLELEEEGTPSELIREIKEELEEIEKERESLLEELKE 240
Score = 30.3 bits (69), Expect = 3.7
Identities = 21/72 (29%), Positives = 38/72 (52%), Gaps = 5/72 (6%)
Query: 587 RIENIIQLIRR-----GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
++ + +R EE+++ + EE ++ EEE E++++E +E EEE E E
Sbjct: 54 KLSEALDKLRSYLPKLNPLREEKKKVSVKSLEELIKDVEEELEKIEKEIKELEEEISELE 113
Query: 642 EEEEEEEEEEEV 653
E +E E+E E
Sbjct: 114 NEIKELEQEIER 125
Score = 29.1 bits (66), Expect = 9.0
Identities = 17/65 (26%), Positives = 26/65 (40%), Gaps = 4/65 (6%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
E +EE EE E+E E EE + ++ EE E E E E E + +
Sbjct: 218 REIKEELEEIEKERESLLEELKELAKKYLEELLALYEYLEIELERAEALSKFL----KTD 273
Query: 664 HFYVL 668
+ +
Sbjct: 274 KTFAI 278
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 32.2 bits (74), Expect = 0.97
Identities = 22/70 (31%), Positives = 27/70 (38%), Gaps = 8/70 (11%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE------EEEEEE 639
R+ LI G EEE E E E + E +E E E + E E
Sbjct: 291 VRLRKY--LIEAGILSEEELEAIEAEAKAEVDEAVEFAEASPYPDVSELFEDVYAEGPPH 348
Query: 640 EEEEEEEEEE 649
EE+ EE EE
Sbjct: 349 LEEQREELEE 358
>gnl|CDD|218967 pfam06273, eIF-4B, Plant specific eukaryotic initiation factor 4B.
This family consists of several plant specific
eukaryotic initiation factor 4B proteins.
Length = 496
Score = 32.4 bits (73), Expect = 0.97
Identities = 16/57 (28%), Positives = 30/57 (52%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
RR +R E EEE+ +EE + ++EE + E + +E+ + E ++E+E
Sbjct: 359 RRVDRPETEEEKNLKEEINLLRVDLKKEEAIAPESKGSGQEQSHKGLSELIRQKEKE 415
Score = 29.7 bits (66), Expect = 5.9
Identities = 13/52 (25%), Positives = 25/52 (48%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
R+ + E E + E EEE+ +EE+ + ++EE E + +E+
Sbjct: 350 RKIDLELEHRRVDRPETEEEKNLKEEINLLRVDLKKEEAIAPESKGSGQEQS 401
Score = 29.3 bits (65), Expect = 7.4
Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 5/68 (7%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE-----EEEEEEEEE 652
G+ + E EE+ ++ + + E E V E EEE+ +EE ++EE E
Sbjct: 333 GDAKPREVVLEEKGKDWRKIDLELEHRRVDRPETEEEKNLKEEINLLRVDLKKEEAIAPE 392
Query: 653 VRGGGKEE 660
+G G+E+
Sbjct: 393 SKGSGQEQ 400
>gnl|CDD|191187 pfam05087, Rota_VP2, Rotavirus VP2 protein. Rotavirus particles
consist of three concentric proteinaceous capsid layers.
The innermost capsid (core) is made of VP2. The genomic
RNA and the two minor proteins VP1 and VP3 are
encapsidated within this layer. The N-terminus of
rotavirus VP2 is necessary for the encapsidation of VP1
and VP3.
Length = 887
Score = 32.2 bits (73), Expect = 0.97
Identities = 15/69 (21%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE----E 651
R + +E+++E+++++ E +E+V +++EE + + +E+ +E +
Sbjct: 7 REANINNNDRMQEKDDEKQDQKNRMELKEKVLDKKEEVVTDNVDSPVKEQSSQENLKIAD 66
Query: 652 EVRGGGKEE 660
EV+ KEE
Sbjct: 67 EVKKSTKEE 75
>gnl|CDD|225637 COG3095, MukE, Uncharacterized protein involved in chromosome
partitioning [Cell division and chromosome
partitioning].
Length = 238
Score = 31.7 bits (72), Expect = 0.98
Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
PR E ++LIR GE E + ++E EE + E+E+ + ++E+
Sbjct: 193 DDPR-EAQLRLIRDGEAMPIENHLQLQDELEEPDAEDEQPDSGEDEQ 238
>gnl|CDD|197400 cd10164, ClassIIa_HDAC5_Gln-rich-N, Glutamine-rich N-terminal
helical domain of HDAC5, a Class IIa histone
deacetylase. This family consists of the glutamine-rich
domain of histone deacetylase 5 (HDAC5). It belongs to a
superfamily that consists of the glutamine-rich
N-terminal helical extension to certain Class IIa
histone deacetylases (HDACs), including HDAC4, HDAC5 and
HDCA9; it is missing from HDAC7. This domain confers
responsiveness to calcium signals and mediates
interactions with transcription factors and cofactors,
and it is able to repress transcription independently of
the HDAC C-terminal, zinc-dependent catalytic domain. It
has many intra- and inter-helical interactions which are
possibly involved in reversible assembly and disassembly
of proteins. HDACs regulate diverse cellular processes
through enzymatic deacetylation of histone as well as
non-histone proteins, in particular deacetylating
N(6)-acetyl-lysine residues.
Length = 97
Score = 30.2 bits (67), Expect = 1.0
Identities = 14/60 (23%), Positives = 36/60 (60%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
L R+ E + ++ + E E++++E + Q+E E++ + E++ +EE E++ E+++
Sbjct: 38 LTRQHEVQLQKHLKVRAELFSEQQQQEILAAKRQQELEQQRKREQQRQEELEKQRLEQQL 97
>gnl|CDD|145556 pfam02478, Pneumo_phosprot, Pneumovirus phosphoprotein. This
family represents the phosphoprotein of Paramyxoviridae,
a putative RNA polymerase alpha subunit that may
function in template binding.
Length = 266
Score = 31.8 bits (72), Expect = 1.0
Identities = 23/84 (27%), Positives = 42/84 (50%), Gaps = 11/84 (13%)
Query: 577 TSDQDEIGSPRI---ENIIQLIRRGEREEEEEEEEEEEEEEEE--------EEEEEEEEE 625
T+ +D I + E +I+ I + + + E EEE + + E+ +E +
Sbjct: 182 TAARDGIRDAMVGLREELIEKIIKEAKGKAAEMLREEESQRAKIGDGSVKLTEKAKELNK 241
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEE 649
+ E+E E EEEEE+E+ EE++
Sbjct: 242 ILEDESSSGESEEEEEDEDLEEDD 265
>gnl|CDD|213783 TIGR03181, PDH_E1_alph_x, pyruvate dehydrogenase E1 component,
alpha subunit. Members of this protein family are the
alpha subunit of the E1 component of pyruvate
dehydrogenase (PDH). This model represents one branch of
a larger family that E1-alpha proteins from
2-oxoisovalerate dehydrogenase, acetoin dehydrogenase,
another PDH clade, etc [Energy metabolism, Pyruvate
dehydrogenase].
Length = 341
Score = 31.7 bits (73), Expect = 1.0
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 9/53 (16%)
Query: 600 REEEEEEEEEEEE---------EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
R +EEEEE +++ E + +EE+EE ++EE E E E E
Sbjct: 261 RTKEEEEEWRKKDPILRLRKYLERKGLWDEEQEEALEEEAEAEVAEAVAEALA 313
Score = 29.4 bits (67), Expect = 6.5
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEV 626
R+ L R+G +EE+EE EEE E E E E +
Sbjct: 277 RLRK--YLERKGLWDEEQEEALEEEAEAEVAEAVAEALAL 314
>gnl|CDD|216295 pfam01093, Clusterin, Clusterin.
Length = 434
Score = 32.0 bits (73), Expect = 1.1
Identities = 17/40 (42%), Positives = 24/40 (60%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
ER EEE + E+ ++E+EE + E EE+ EEEEE
Sbjct: 33 ERTEEEHKNLMSTLEKTKKEKEEALKLANEVEEKLEEEEE 72
>gnl|CDD|219956 pfam08658, Rad54_N, Rad54 N terminal. This is the N terminal of
the DNA repair protein Rad54.
Length = 191
Score = 31.2 bits (71), Expect = 1.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
V ++ + EEE+ E+++E EE E +
Sbjct: 141 VDDKPKIEEEKAEKDQEPEESETKLSNG 168
Score = 30.4 bits (69), Expect = 2.0
Identities = 8/27 (29%), Positives = 16/27 (59%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ + EEE+ E+++E EE E + +
Sbjct: 144 KPKIEEEKAEKDQEPEESETKLSNGPK 170
Score = 30.0 bits (68), Expect = 3.0
Identities = 8/26 (30%), Positives = 16/26 (61%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEV 626
++ + EEE+ E+++E EE E +
Sbjct: 143 DKPKIEEEKAEKDQEPEESETKLSNG 168
Score = 29.2 bits (66), Expect = 4.5
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEV 626
+ + EEE+ E+++E EE E +
Sbjct: 144 KPKIEEEKAEKDQEPEESETKLSNGP 169
Score = 29.2 bits (66), Expect = 4.8
Identities = 12/34 (35%), Positives = 22/34 (64%)
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
+++ + EEE+ E+++E EE E ++ G K SL
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKVHKSL 175
Score = 29.2 bits (66), Expect = 4.8
Identities = 7/26 (26%), Positives = 17/26 (65%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEE 641
+++ + EEE+ ++++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSN 167
Score = 29.2 bits (66), Expect = 5.1
Identities = 8/25 (32%), Positives = 16/25 (64%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEE 623
++ + EEE+ E+++E EE E +
Sbjct: 143 DKPKIEEEKAEKDQEPEESETKLSN 167
Score = 29.2 bits (66), Expect = 5.2
Identities = 9/29 (31%), Positives = 17/29 (58%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEV 626
+ + EEE+ E+++E EE E + +V
Sbjct: 143 DKPKIEEEKAEKDQEPEESETKLSNGPKV 171
Score = 28.8 bits (65), Expect = 6.4
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEE 625
+++ + EEE+ E+++E EE E +
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLS 166
Score = 28.5 bits (64), Expect = 9.7
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++ + EEE+ E+++E EE E + +V
Sbjct: 142 DDKPKIEEEKAEKDQEPEESETKLSNGPKV 171
>gnl|CDD|220231 pfam09420, Nop16, Ribosome biogenesis protein Nop16. Nop16 is a
protein involved in ribosome biogenesis.
Length = 173
Score = 31.3 bits (71), Expect = 1.1
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ I +++GE E +++ +E + +EEEE+ EV ++ EEE E ++ + E
Sbjct: 71 DKPIPELKKGEARIERDDKGNPLDEPLDSKEEEEKPEVVKQLEEEASEPAKKPRRLSKRE 130
Query: 649 EEEEVR 654
EE R
Sbjct: 131 EEWIER 136
>gnl|CDD|192987 pfam12325, TMF_TATA_bd, TATA element modulatory factor 1 TATA
binding. This is the C-terminal conserved coiled coil
region of a family of TATA element modulatory factor 1
proteins conserved in eukaryotes. The proteins bind to
the TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding of
TATA binding protein. TMF1_TATA_bd is the most conserved
part of the TMFs. TMFs are evolutionarily conserved
golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells. The Rab6-binding
domain appears to be the same region as this C-terminal
family.
Length = 121
Score = 30.2 bits (69), Expect = 1.1
Identities = 20/56 (35%), Positives = 30/56 (53%), Gaps = 12/56 (21%)
Query: 599 EREEEEEE-----EEEEEEEEEEEEEEEEEEEVQEEEEEEE-------EEEEEEEE 642
ER+E +E EE EE E ++E EE E+E+++ E+ E E+ E EE
Sbjct: 46 ERDEARQEIVKLTEENEELRELKKEIEELEKELEDLEQRYETTLELLGEKSERVEE 101
>gnl|CDD|223945 COG1013, PorB, Pyruvate:ferredoxin oxidoreductase and related
2-oxoacid:ferredoxin oxidoreductases, beta subunit
[Energy production and conversion].
Length = 294
Score = 31.5 bits (72), Expect = 1.2
Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEE-EEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E + I G EE E EE + + E +++Q++ +E EE +
Sbjct: 241 EEKGKDIPIGIFYPVEEYLEYEERFKHLTKSNPELIQKLQKDVDERWEELKR 292
Score = 30.7 bits (70), Expect = 2.6
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
G+ EEE+ ++ EE E EE + + E ++ +++ +E EE +
Sbjct: 237 GKAEEEKGKDIPIGIFYPVEEYLEYEERFKHLTKSNPELIQKLQKDVDERWEELK 291
>gnl|CDD|221165 pfam11680, DUF3276, Protein of unknown function (DUF3276). This
bacterial family of proteins has no known function.
Length = 123
Score = 30.4 bits (69), Expect = 1.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++E+ EEV E ++ E++E EE E E+ + +
Sbjct: 82 KKEKGEEVISERHQDSEKKETAEEGEAEKSKLDS 115
Score = 30.4 bits (69), Expect = 1.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
++E+ EE E Q+ E++E EE E E+ + + E
Sbjct: 82 KKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSEI 117
Score = 28.8 bits (65), Expect = 4.1
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++E+ EE + E ++ E++E EE E E+ + + E
Sbjct: 82 KKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSE 116
Score = 28.4 bits (64), Expect = 6.2
Identities = 11/36 (30%), Positives = 19/36 (52%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++E+ EE E E++E EE E E+ + + E
Sbjct: 82 KKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSEI 117
Score = 28.0 bits (63), Expect = 7.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
++E+ EE E ++ E++E EE E E+ + + E
Sbjct: 82 KKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSEI 117
Score = 27.7 bits (62), Expect = 8.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
++E+ EE E ++ E +E EE E E+ + + E
Sbjct: 82 KKEKGEEVISERHQDSEKKETAEEGEAEKSKLDSEI 117
>gnl|CDD|200340 TIGR03927, T7SS_EssA_Firm, type VII secretion protein EssA.
Members of this family are associated with type VII
secretion of WXG100 family targets in the Firmicutes,
but not in the Actinobacteria. This highly divergent
protein family consists largely of a central region of
highly polar low-complexity sequence containing
occasional LF motifs in weak repeats about 17 residues
in length, flanked by hydrophobic N- and C-terminal
regions [Protein fate, Protein and peptide secretion and
trafficking].
Length = 150
Score = 30.8 bits (70), Expect = 1.2
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E+++ E + +EE E ++E EE+++ ++ +E+ E+EE +
Sbjct: 30 RYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELK 77
Score = 30.0 bits (68), Expect = 2.2
Identities = 13/51 (25%), Positives = 28/51 (54%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E + +EE E ++E EE++++ ++ +E+ E+EE + + E E
Sbjct: 37 EINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENATE 87
Score = 29.7 bits (67), Expect = 2.6
Identities = 12/48 (25%), Positives = 29/48 (60%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E+++ E + +EE E ++E+ EE+++ ++ +E+ E+EE +
Sbjct: 30 RYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELK 77
Score = 28.9 bits (65), Expect = 4.8
Identities = 12/48 (25%), Positives = 28/48 (58%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E+++ E + +EE E ++E EE+++ ++ +E+ E+EE +
Sbjct: 30 RYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELK 77
Score = 28.9 bits (65), Expect = 5.4
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 1/65 (1%)
Query: 590 NIIQLIR-RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ + E + +EE E ++E EE+++ Q+ +E+ E+EE + + E
Sbjct: 27 KPNRYEKKDIEINTDYLQEETELDKELFTPEEQKKITFQKHKEKPEQEELKNQLFSENAT 86
Query: 649 EEEEV 653
E V
Sbjct: 87 ENNTV 91
>gnl|CDD|218007 pfam04288, MukE, MukE-like family. Bacterial protein involved in
chromosome partitioning, MukE.
Length = 227
Score = 31.4 bits (71), Expect = 1.2
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
PR E ++LIR GE EE +++ E + E +EE+ E+
Sbjct: 186 DDPR-EAQLRLIRDGEAVVEESQQQLLENDTAEYDEEDTGED 226
>gnl|CDD|216881 pfam02115, Rho_GDI, RHO protein GDP dissociation inhibitor.
Length = 200
Score = 31.1 bits (71), Expect = 1.2
Identities = 13/44 (29%), Positives = 25/44 (56%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E+E E+ EE E+EE+E+ ++ +E +E ++E+E
Sbjct: 3 EQEPTAEQAEEIAAEDEEDEDSVNYKPPPQKSLKEIQELDKEDE 46
Score = 30.0 bits (68), Expect = 2.7
Identities = 13/44 (29%), Positives = 26/44 (59%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E+E E+ EE E+EE+E+ + ++ +E +E ++E+E
Sbjct: 3 EQEPTAEQAEEIAAEDEEDEDSVNYKPPPQKSLKEIQELDKEDE 46
Score = 28.8 bits (65), Expect = 7.3
Identities = 9/33 (27%), Positives = 18/33 (54%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E+E E+ EE E+EE+E+ + ++ +
Sbjct: 3 EQEPTAEQAEEIAAEDEEDEDSVNYKPPPQKSL 35
>gnl|CDD|218704 pfam05701, DUF827, Plant protein of unknown function (DUF827).
This family consists of several plant proteins of
unknown function. Several sequences in this family are
described as being "myosin heavy chain-like".
Length = 484
Score = 31.9 bits (72), Expect = 1.2
Identities = 19/66 (28%), Positives = 29/66 (43%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
+ GE EE E E + E+E + E++ E + ++ E EE +E E E
Sbjct: 302 KEGEAEEAASSLEAELNRTKSEKESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELR 361
Query: 656 GGKEEI 661
KEE
Sbjct: 362 KLKEEA 367
Score = 31.9 bits (72), Expect = 1.2
Identities = 19/54 (35%), Positives = 30/54 (55%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE EE ++ EE EE E++ + + EE +E E E ++ EE +E EE +
Sbjct: 424 LEEYEELSKKAEEAEELAEKKVAAALAQVEEAKESENESLKKLEEASKEIEEKK 477
Score = 31.1 bits (70), Expect = 2.0
Identities = 18/54 (33%), Positives = 29/54 (53%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
++E EEE++E EE E+E E EE E E + E+E + E+ E ++
Sbjct: 286 KQELEEEKKELEELREKEGEAEEAASSLEAELNRTKSEKESKAREKMVEIPLKL 339
Score = 31.1 bits (70), Expect = 2.3
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 5/72 (6%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE-----EE 648
L R +E + E+ E + ++ E EE ++E E EE + +EE E+ E
Sbjct: 317 LNRTKSEKESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKLKEEAEQTKAALET 376
Query: 649 EEEEVRGGGKEE 660
E + KE
Sbjct: 377 AELRLEAALKEA 388
Score = 30.3 bits (68), Expect = 4.1
Identities = 15/57 (26%), Positives = 27/57 (47%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E + E+E + E+ E + ++ E EE +E E EE + +EE E+ +
Sbjct: 315 AELNRTKSEKESKAREKMVEIPLKLQQASSEAEEARKEAEAAREELRKLKEEAEQTK 371
Score = 30.0 bits (67), Expect = 4.7
Identities = 23/74 (31%), Positives = 40/74 (54%), Gaps = 8/74 (10%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEE-----EEEEEEVQEEEEEEEEEEEEEEE 642
+ N+++ +++ E EEE++E EE E+E E EE E E + E+E + E+ E
Sbjct: 278 LRNLVESLKQ-ELEEEKKELEELREKEGEAEEAASSLEAELNRTKSEKESKAREKMVEIP 336
Query: 643 EEEEE--EEEEEVR 654
+ ++ E EE R
Sbjct: 337 LKLQQASSEAEEAR 350
Score = 30.0 bits (67), Expect = 5.0
Identities = 17/53 (32%), Positives = 28/53 (52%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
L ++ E EE E++ + EE +E E E ++ EE +E EE++ EE
Sbjct: 430 LSKKAEEAEELAEKKVAAALAQVEEAKESENESLKKLEEASKEIEEKKAALEE 482
>gnl|CDD|146261 pfam03528, Rabaptin, Rabaptin.
Length = 106
Score = 29.9 bits (67), Expect = 1.2
Identities = 16/80 (20%), Positives = 45/80 (56%), Gaps = 3/80 (3%)
Query: 576 KTSDQDEIGSPRIENII-QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+Q+E+ S ++ I+ + + E + ++E + + +E EE E +++Q +
Sbjct: 19 MRQEQEEVAS--LQAIMKETVSGYETQWNLLQQERLQWIQYQEAEEREVKKLQRRLRQAN 76
Query: 635 EEEEEEEEEEEEEEEEEEVR 654
EE++ E+ ++++E E++++
Sbjct: 77 EEDQLEKTMKKKKELEDKLK 96
>gnl|CDD|237171 PRK12678, PRK12678, transcription termination factor Rho;
Provisional.
Length = 672
Score = 32.2 bits (74), Expect = 1.2
Identities = 11/62 (17%), Positives = 25/62 (40%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
RG REE + ++ + + E+ + EE + + + + + ++ E RG
Sbjct: 189 ERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNREDRG 248
Query: 656 GG 657
Sbjct: 249 DR 250
Score = 30.6 bits (70), Expect = 3.6
Identities = 8/62 (12%), Positives = 22/62 (35%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
RGER EE + ++ + + E+ + + + + + + ++ R
Sbjct: 186 ERGERGRREERGRDGDDRDRRDRREQGDRREERGRRDGGDRRGRRRRRDRRDARGDDNRE 245
Query: 656 GG 657
Sbjct: 246 DR 247
>gnl|CDD|217305 pfam02970, TBCA, Tubulin binding cofactor A.
Length = 91
Score = 29.5 bits (67), Expect = 1.2
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 12/68 (17%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEE------------EEEEEEEEEEEEEEEEE 646
E E++EE E+ + E +E + +++EEV +E ++ + EE EE EE
Sbjct: 22 EVEQQEERVEKLKAEGADEYDLKKQEEVLKETEMMLPDCKRRLQKAVADLEEYLEEYEEG 81
Query: 647 EEEEEEVR 654
EE EE +
Sbjct: 82 LEELEEAK 89
>gnl|CDD|205495 pfam13315, DUF4085, Protein of unknown function (DUF4085). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 101 and 269 amino
acids in length.
Length = 208
Score = 31.3 bits (71), Expect = 1.2
Identities = 15/35 (42%), Positives = 22/35 (62%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
E +EE EEE EEEE + + ++EE EE +E+
Sbjct: 20 PESQEEWEEELREEEESGNDYLQSLKEEIEEIKED 54
Score = 30.2 bits (68), Expect = 2.7
Identities = 16/35 (45%), Positives = 22/35 (62%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
E +EE EEE EEEE + +Q +EE EE +E+
Sbjct: 20 PESQEEWEEELREEEESGNDYLQSLKEEIEEIKED 54
Score = 29.8 bits (67), Expect = 3.3
Identities = 16/45 (35%), Positives = 24/45 (53%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
++ G E +EE EEE EEEE + + +EE EE +E+
Sbjct: 10 EMQISGLLSFPESQEEWEEELREEEESGNDYLQSLKEEIEEIKED 54
Score = 29.8 bits (67), Expect = 3.8
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
E +EE EEE EEEE + + +EE EE +E+
Sbjct: 20 PESQEEWEEELREEEESGNDYLQSLKEEIEEIKED 54
Score = 29.4 bits (66), Expect = 5.2
Identities = 16/45 (35%), Positives = 22/45 (48%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+E +E ++ E +EE EEE EEEE + KEEI
Sbjct: 4 TKEWYKEMQISGLLSFPESQEEWEEELREEEESGNDYLQSLKEEI 48
Score = 28.6 bits (64), Expect = 8.3
Identities = 15/35 (42%), Positives = 23/35 (65%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E +EE EEE++EEEE + + +EE EE +E+
Sbjct: 20 PESQEEWEEELREEEESGNDYLQSLKEEIEEIKED 54
>gnl|CDD|224035 COG1110, COG1110, Reverse gyrase [DNA replication, recombination,
and repair].
Length = 1187
Score = 32.0 bits (73), Expect = 1.2
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EE E E +++ + E+ E EE E E E E+ R
Sbjct: 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRR 274
Score = 30.4 bits (69), Expect = 3.8
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
IE+ +LI+ + E+ E EE E E E E++
Sbjct: 236 IESAYELIKLRRKLYGEKRAERVREELREVEREREKKR 273
Score = 30.0 bits (68), Expect = 5.7
Identities = 13/46 (28%), Positives = 19/46 (41%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
EE E E + + E+ E EE E E E E++ + G
Sbjct: 232 SEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLG 277
Score = 29.7 bits (67), Expect = 6.8
Identities = 14/44 (31%), Positives = 20/44 (45%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
G EE E E + + E+ E V+EE E E E E++
Sbjct: 230 GFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKR 273
>gnl|CDD|107089 PHA01819, PHA01819, hypothetical protein.
Length = 129
Score = 30.3 bits (67), Expect = 1.2
Identities = 19/60 (31%), Positives = 30/60 (50%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++++ ++EE E EE E EE E EE + E++ E EEE E + E +E
Sbjct: 6 EIVKPDDKEETSESTEENLESTEETSESTEESTEESTEDKTVETIEEENENKLEPTTTDE 65
>gnl|CDD|220077 pfam08938, DUF1916, Domain of unknown function (DUF1916). This
domain is found in various eukaryotic HBS1-like
proteins.
Length = 148
Score = 30.5 bits (69), Expect = 1.3
Identities = 12/34 (35%), Positives = 20/34 (58%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
E EEE+E+E E+E E + E V + +E ++
Sbjct: 53 VEPVEEEDEDEYEDENERRDSESVSNPQLDELDQ 86
Score = 28.9 bits (65), Expect = 5.2
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
R G++ E EEE+E+E E+E E + E
Sbjct: 45 RDGQQSMSVEPVEEEDEDEYEDENERRDSE 74
Score = 28.6 bits (64), Expect = 5.7
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEE 644
E V+EE+E+E E+E E + E
Sbjct: 53 VEPVEEEDEDEYEDENERRDSE 74
>gnl|CDD|217676 pfam03695, UPF0149, Uncharacterized protein family (UPF0149). The
protein in this family are about 190 amino acids long.
The function of these proteins is unknown.
Length = 158
Score = 30.8 bits (70), Expect = 1.3
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 23/76 (30%)
Query: 602 EEEEEEEEEEEEEE---------------EEEEEEEEEEVQEE--------EEEEEEEEE 638
E+EEE+EEE E EE+ EE EE+QE + E++E+E+
Sbjct: 69 PEDEEEDEEERAEALAEWAEGFLLGLGLAEEDWEELSEELQELLLDLAAIADLEDDEDED 128
Query: 639 EEEEEEEEEEEEEEVR 654
+EE EE EE E +R
Sbjct: 129 DEEGEEALEELPEYLR 144
>gnl|CDD|216194 pfam00922, Phosphoprotein, Vesiculovirus phosphoprotein.
Length = 283
Score = 31.4 bits (71), Expect = 1.3
Identities = 12/80 (15%), Positives = 29/80 (36%), Gaps = 3/80 (3%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEE---EEEEEEEEEEEEEEEEEEEVQEEEEEE 633
S+ +E+ R + E EE + E E E+++ + E
Sbjct: 17 LSEIEEMEEQRADKSSTFQEDSVEEHTSPSYYLAEELSDSETEPSIEDDQGLYTQLPPAE 76
Query: 634 EEEEEEEEEEEEEEEEEEEV 653
+ E + ++ +++ +V
Sbjct: 77 QVEGFIQGPLDDIADDDIDV 96
Score = 30.3 bits (68), Expect = 3.3
Identities = 16/71 (22%), Positives = 29/71 (40%), Gaps = 7/71 (9%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEE-------EEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E EE EE+ ++ +E+ EE EE+ + E E E+++ + E+
Sbjct: 18 SEIEEMEEQRADKSSTFQEDSVEEHTSPSYYLAEELSDSETEPSIEDDQGLYTQLPPAEQ 77
Query: 651 EEVRGGGKEEI 661
E G +
Sbjct: 78 VEGFIQGPLDD 88
>gnl|CDD|220222 pfam09403, FadA, Adhesion protein FadA. FadA (Fusobacterium
adhesin A) is an adhesin which forms two alpha helices.
Length = 126
Score = 30.3 bits (68), Expect = 1.3
Identities = 18/55 (32%), Positives = 31/55 (56%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFY 666
E E + ++EE +EE++E+E E+E +E +E + EE+ KEE F+
Sbjct: 33 EAEYQALMQKEEARFEEEKQEKETAEKEVQELKERQLGREELYAKLKEESKTRFH 87
Score = 30.3 bits (68), Expect = 1.4
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++EE EEE++E+E E+EVQE +E + EE + +EE
Sbjct: 41 QKEEARFEEEKQEKETAEKEVQELKERQLGREELYAKLKEE 81
Score = 30.3 bits (68), Expect = 1.4
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E + ++EE EEE++E+E ++E +E +E + EE + +EE + R
Sbjct: 33 EAEYQALMQKEEARFEEEKQEKETAEKEVQELKERQLGREELYAKLKEESKTR 85
Score = 30.3 bits (68), Expect = 1.5
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
++EE EEE++E+E E+E +E +E Q EE + +EE
Sbjct: 41 QKEEARFEEEKQEKETAEKEVQELKERQLGREELYAKLKEE 81
Score = 27.6 bits (61), Expect = 9.9
Identities = 15/47 (31%), Positives = 27/47 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E + ++EE EEE++E+E E+E + +E + EE + +EE
Sbjct: 35 EYQALMQKEEARFEEEKQEKETAEKEVQELKERQLGREELYAKLKEE 81
>gnl|CDD|227499 COG5171, YRB1, Ran GTPase-activating protein (Ran-binding protein)
[Intracellular trafficking and secretion].
Length = 211
Score = 31.1 bits (70), Expect = 1.3
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 10/79 (12%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE----------E 645
+ + E E +E + E E V E + + EE+E +
Sbjct: 44 KVQQSPFLENAVPEGDEGKGPESPNIHFEPVVELQRVHLKTNEEDETVLFKARAKLFRFD 103
Query: 646 EEEEEEEVRGGGKEEISLH 664
EE +E + RG G I H
Sbjct: 104 EEAKEWKERGTGDMIILKH 122
Score = 30.8 bits (69), Expect = 1.8
Identities = 13/58 (22%), Positives = 23/58 (39%), Gaps = 2/58 (3%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE--EEEEEEEEEEEEEEEV 653
G+ + EE++ ++ E E +E E E E + + EE+E V
Sbjct: 34 GDGKAGGEEKKVQQSPFLENAVPEGDEGKGPESPNIHFEPVVELQRVHLKTNEEDETV 91
>gnl|CDD|221919 pfam13094, CENP-Q, CENP-A-nucleosome distal (CAD) centromere
subunit. CENP-Q is one of the components that assembles
onto the CENP-A-nucleosome distal (CAD) centromere. The
centromere, which is the basic element of chromosome
inheritance, is epigenetically determined in mammals.
CENP-A, the centromere-specific histone H3 variant,
assembles an array of nucleosomes and it is this that
seems to be the prime candidate for specifying
centromere identity. CENP-A nucleosomes directly recruit
a proximal CENP-A nucleosome associated complex (NAC)
comprised of CENP-M, CENP-N and CENP-T, CENP-U(50),
CENP-C and CENP-H. Assembly of the CENP-A NAC at
centromeres is dependent on CENP-M, CENP-N and CENP-T.
Additionally, there are seven other subunits which make
up the CENP-A-nucleosome distal (CAD) centromere,
CENP-K, CENP-L, CENP-O, CENP-P, CENP-Q, CENP-R and
CENP-S, also assembling on the CENP-A NAC. Fta7 is the
equivalent component of the fission yeast Sim4 complex.
Length = 159
Score = 30.8 bits (70), Expect = 1.3
Identities = 20/57 (35%), Positives = 29/57 (50%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
L R+ E ++ E EEE EE E E++ E +QE E+ + E E EEE +
Sbjct: 31 ALERQLAAELKQLELLEEEIRREEAELEKDLEYLQELEKNAKALEREREEESKNLHP 87
Score = 30.4 bits (69), Expect = 1.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EEE EE E E++ E +E E+ + E E EEE + E E
Sbjct: 47 EEEIRREEAELEKDLEYLQELEKNAKALEREREEESKNLHPVLRLLESEV 96
Score = 29.2 bits (66), Expect = 4.5
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EEE EE E E++ E +E E+ + E E EEE + E E + +
Sbjct: 47 EEEIRREEAELEKDLEYLQELEKNAKALEREREEESKNLHPVLRLLESEVLEENELLQ 104
Score = 28.1 bits (63), Expect = 9.7
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
REE E E++ E +E E+ + E E +EE + E E EE E +
Sbjct: 51 RREEAELEKDLEYLQELEKNAKALEREREEESKNLHPVLRLLESEVLEENELLQ 104
>gnl|CDD|233222 TIGR00986, 3a0801s05tom22, mitochondrial import receptor subunit
Tom22. The mitochondrial protein translocase (MPT)
family, which brings nuclearly encoded preproteins into
mitochondria, is very complex with 19 currently
identified protein constituents.These proteins include
several chaperone proteins, four proteins of the outer
membrane translocase (Tom) import receptor, five
proteins of the Tom channel complex, five proteins of
the inner membrane translocase (Tim) and three "motor"
proteins. This family is specific for the Tom22 proteins
[Transport and binding proteins, Amino acids, peptides
and amines].
Length = 145
Score = 30.7 bits (69), Expect = 1.3
Identities = 13/45 (28%), Positives = 25/45 (55%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E E+E ++ E++ E EE++E + + E+ + + E EEE
Sbjct: 5 TEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
Score = 29.9 bits (67), Expect = 2.4
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E E+E ++ E++ E EE++E+ +V E+ + + E EEE
Sbjct: 6 EVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
Score = 28.8 bits (64), Expect = 4.9
Identities = 12/47 (25%), Positives = 26/47 (55%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+ E E+E ++ E++ E EE+ ++ + + E+ + + E EEE
Sbjct: 3 QLTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
Score = 28.8 bits (64), Expect = 5.9
Identities = 13/47 (27%), Positives = 25/47 (53%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ E E+E ++ E++ E EE E+ + + E+ + + E EEE
Sbjct: 3 QLTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
Score = 28.0 bits (62), Expect = 9.4
Identities = 13/47 (27%), Positives = 27/47 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+ E E+E ++ E++ E EE++E+ + + E+ + + E EEE
Sbjct: 3 QLTEVEDEHFQQPEQQTVVEPEEDDEDFTDVDSEDSVDSDFESLEEE 49
>gnl|CDD|225281 COG2425, COG2425, Uncharacterized protein containing a von
Willebrand factor type A (vWA) domain [General function
prediction only].
Length = 437
Score = 31.6 bits (72), Expect = 1.3
Identities = 15/45 (33%), Positives = 22/45 (48%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
L++ +RE E+ E E E E++EE + E EE EE
Sbjct: 115 LLQDLQREGSEDFLEGEREGLLSEKQEEISLSGEMEGILEEVEEL 159
Score = 31.6 bits (72), Expect = 1.4
Identities = 15/41 (36%), Positives = 17/41 (41%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ E E+ E E E E QEE E E EE EE
Sbjct: 119 LQREGSEDFLEGEREGLLSEKQEEISLSGEMEGILEEVEEL 159
Score = 31.6 bits (72), Expect = 1.4
Identities = 21/95 (22%), Positives = 32/95 (33%)
Query: 568 IRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ 627
P V + S + + R E+ E E EE ++ + E
Sbjct: 67 SEPEFLVQLPFILKLLSSDVYRRVKEATRLNEKHSLSAPESFLERWEELLQDLQREGSED 126
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E E E E++EE E E + +E IS
Sbjct: 127 FLEGEREGLLSEKQEEISLSGEMEGILEEVEELIS 161
Score = 30.8 bits (70), Expect = 2.8
Identities = 18/84 (21%), Positives = 32/84 (38%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E+ ++ ++ + E E+ E E E E++EE+ E E EE EE
Sbjct: 106 ESFLERWEELLQDLQREGSEDFLEGEREGLLSEKQEEISLSGEMEGILEEVEELISGRLW 165
Query: 649 EEEEVRGGGKEEISLHFYVLYVLS 672
+ + L Y ++L
Sbjct: 166 DMSAGELKKGDLELLGKYADFLLK 189
>gnl|CDD|204614 pfam11221, Med21, Subunit 21 of Mediator complex. Med21 has been
known as Srb7 in yeasts, hSrb7 in humans and Trap 19 in
Drosophila. The heterodimer of the two subunits Med7 and
Med21 appears to act as a hinge between the middle and
the tail regions of Mediator.
Length = 132
Score = 30.3 bits (69), Expect = 1.3
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E EEE+ ++E EEE E E E EE +E+E+
Sbjct: 83 IESSEEEQLRRIKELEEELREVEAEREEAVKEKEKL 118
Score = 28.4 bits (64), Expect = 5.3
Identities = 16/38 (42%), Positives = 23/38 (60%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
EEE+ +E EEE E E E EE V+E+E+ ++ E
Sbjct: 87 EEEQLRRIKELEEELREVEAEREEAVKEKEKLLKKVEA 124
Score = 28.4 bits (64), Expect = 5.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E EEE+ +E EEE E E E EE V+
Sbjct: 83 IESSEEEQLRRIKELEEELREVEAEREEAVK 113
Score = 28.0 bits (63), Expect = 7.8
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E EEE+ +E++EE E E E EE +E+E+
Sbjct: 83 IESSEEEQLRRIKELEEELREVEAEREEAVKEKEKL 118
Score = 28.0 bits (63), Expect = 7.8
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E EEE+++ +E EEE E E E EE +E+E++
Sbjct: 83 IESSEEEQLRRIKELEEELREVEAEREEAVKEKEKLLK 120
Score = 28.0 bits (63), Expect = 9.2
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E EEE+ +E EEE++E E E EE +E+E+ ++ E
Sbjct: 83 IESSEEEQLRRIKELEEELREVEAEREEAVKEKEKLLKKVEA 124
>gnl|CDD|225159 COG2250, COG2250, Uncharacterized conserved protein related to
C-terminal domain of eukaryotic chaperone, SACSIN
[Function unknown].
Length = 132
Score = 30.4 bits (69), Expect = 1.4
Identities = 16/58 (27%), Positives = 25/58 (43%), Gaps = 2/58 (3%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE--EEEVQEEEEEEEEEEEEEE 641
P+ ++ +L+R RE E EE E E E+ + E E +E+ EE
Sbjct: 56 PKTHSLRELLRELSRELEVPEEILECARELEKRYILSRYPDAEYEGPLELYSKEDAEE 113
>gnl|CDD|232831 TIGR00115, tig, trigger factor. Trigger factor is a
ribosome-associated molecular chaperone and is the first
chaperone to interact with nascent polypeptide. Trigger
factor can bind at the same time as the signal
recognition particle (SRP), but is excluded by the SRP
receptor (FtsY). The central domain of trigger factor
has peptidyl-prolyl cis/trans isomerase activity. This
protein is found in a single copy in virtually every
bacterial genome [Protein fate, Protein folding and
stabilization].
Length = 408
Score = 31.7 bits (73), Expect = 1.4
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 11/77 (14%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE-------EEVQEEEE----EEEEEE 637
+ + QL ++G EE ++ EEE EE EE E EE+ ++E+ EEE E
Sbjct: 306 QALQQLQQQGIDLEEYLKDTEEELREEFREEAERRVKLGLILEEIAKKEKIEVSEEEVEA 365
Query: 638 EEEEEEEEEEEEEEEVR 654
E EE ++ E+ EEV+
Sbjct: 366 EIEELAQQYGEDPEEVK 382
>gnl|CDD|225962 COG3428, COG3428, Predicted membrane protein [Function unknown].
Length = 494
Score = 31.6 bits (72), Expect = 1.4
Identities = 16/64 (25%), Positives = 21/64 (32%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
GE E E E E E E ++ E E + EEE E +
Sbjct: 123 GEAEAELVEREIAFELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSVLRYPMN 182
Query: 658 KEEI 661
K E+
Sbjct: 183 KGEL 186
Score = 30.5 bits (69), Expect = 3.5
Identities = 15/56 (26%), Positives = 19/56 (33%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
G E E E E E E E + + E E + EEE E + V
Sbjct: 121 GGGEAEAELVEREIAFELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSV 176
Score = 29.3 bits (66), Expect = 7.8
Identities = 12/59 (20%), Positives = 19/59 (32%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E E E E E ++ + E+ E + EEE E + +G
Sbjct: 126 EAELVEREIAFELAALVREARVKKLDALELAEADTPEEEVAEVLARSQSSVLRYPMNKG 184
>gnl|CDD|234045 TIGR02876, spore_yqfD, sporulation protein YqfD. YqfD is part of
the sigma-E regulon in the sporulation program of
endospore-forming Gram-positive bacteria. Mutation
results in a sporulation defect in Bacillus subtilis.
Members are found in all currently known
endospore-forming bacteria, including the genera
Bacillus, Symbiobacterium, Carboxydothermus,
Clostridium, and Thermoanaerobacter [Cellular processes,
Sporulation and germination].
Length = 382
Score = 31.5 bits (72), Expect = 1.4
Identities = 16/66 (24%), Positives = 37/66 (56%), Gaps = 3/66 (4%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE---EEEEEEVRGGGKEEIS 662
+E E +E+ E+ +EE +++ +E+ E+E ++E + + ++ E GGK +++
Sbjct: 312 VKETYYEVKEKVEKVTKEEAIEKAKEKAEKELKKELDPNAKIVSDKILSERVEGGKVKVT 371
Query: 663 LHFYVL 668
+H V
Sbjct: 372 VHVEVE 377
>gnl|CDD|224849 COG1938, COG1938, Archaeal enzymes of ATP-grasp superfamily
[General function prediction only].
Length = 244
Score = 31.1 bits (71), Expect = 1.4
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
++ E+E EE EE+ E+ E++++EEE E EEE
Sbjct: 207 DKLEKEAEEIEEQLEKLAEQLEKEEERVEREEEP 240
Score = 30.4 bits (69), Expect = 2.8
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++ E+E EE EE++++ E+ E+EEE E EEE
Sbjct: 207 DKLEKEAEEIEEQLEKLAEQLEKEEERVEREEEP 240
Score = 29.2 bits (66), Expect = 6.4
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
++ E+E EE EE+ E++ E+ E+EEE E EEE
Sbjct: 207 DKLEKEAEEIEEQLEKLAEQLEKEEERVEREEEP 240
Score = 28.8 bits (65), Expect = 9.1
Identities = 15/38 (39%), Positives = 23/38 (60%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++ E+E E EE+ E+ E+ E+EEE E EEE +
Sbjct: 207 DKLEKEAEEIEEQLEKLAEQLEKEEERVEREEEPPMYM 244
>gnl|CDD|184732 PRK14539, PRK14539, 50S ribosomal protein L11/unknown domain fusion
protein; Provisional.
Length = 196
Score = 31.1 bits (70), Expect = 1.4
Identities = 10/55 (18%), Positives = 25/55 (45%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+ + + E + + + +E + E E++ + + E EE+E E++E
Sbjct: 142 VVKAKEEAKAAAKAAALAKAKEASLKSAEAELKASKGKSIEVNVIGEEDEGEKDE 196
Score = 29.1 bits (65), Expect = 4.9
Identities = 12/57 (21%), Positives = 24/57 (42%)
Query: 581 DEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
D++ + E + +E + E E + + + E V EE+E E++E
Sbjct: 140 DDVVKAKEEAKAAAKAAALAKAKEASLKSAEAELKASKGKSIEVNVIGEEDEGEKDE 196
Score = 28.4 bits (63), Expect = 8.8
Identities = 10/51 (19%), Positives = 22/51 (43%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+EE + + + +E + E + + + E EE+E E++E
Sbjct: 146 KEEAKAAAKAAALAKAKEASLKSAEAELKASKGKSIEVNVIGEEDEGEKDE 196
>gnl|CDD|224112 COG1191, FliA, DNA-directed RNA polymerase specialized sigma
subunit [Transcription].
Length = 247
Score = 31.1 bits (71), Expect = 1.4
Identities = 24/99 (24%), Positives = 45/99 (45%), Gaps = 11/99 (11%)
Query: 565 LKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE- 623
L +R + V E+G E I +L + RE +EE EE ++EE E
Sbjct: 90 LDYLRKNDSVKVPRSLRELGRRIEEAIDELEQELGREPTDEEIAEELGIDKEEYIEALLA 149
Query: 624 ----------EEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E+V ++++++ +++ E ++ E+EE E
Sbjct: 150 INGSQLLSLDEDVLKDDDDDVDDQIENPDDGVEKEELLE 188
Score = 30.0 bits (68), Expect = 4.1
Identities = 24/94 (25%), Positives = 45/94 (47%), Gaps = 13/94 (13%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE---EEEEVQEEEEEE-- 633
D + PR ++ +L RR E +E E+E E +EE EE ++EE E
Sbjct: 95 KNDSVKVPR--SLRELGRRIEEAIDELEQELGREPTDEEIAEELGIDKEEYIEALLAING 152
Query: 634 ------EEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+E+ ++++++ +++ E G KEE+
Sbjct: 153 SQLLSLDEDVLKDDDDDVDDQIENPDDGVEKEEL 186
>gnl|CDD|218899 pfam06102, DUF947, Domain of unknown function (DUF947). Family of
eukaryotic proteins with unknown function.
Length = 168
Score = 30.7 bits (70), Expect = 1.4
Identities = 17/69 (24%), Positives = 38/69 (55%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R E EE E+ ++ ++ EE+EE + + ++ + + ++ E E +E +++E+E+
Sbjct: 60 YREKEIEELEKALKKTKDSEEKEELKRTLQSMKSRLKTLKNKDREREILKEHKKQEKELI 119
Query: 655 GGGKEEISL 663
GK+ L
Sbjct: 120 KEGKKPYYL 128
>gnl|CDD|218670 pfam05639, Pup, Pup-like protein. This family consists of several
short bacterial proteins formely known as (DUF797). It
was recently shown that Mycobacterium tuberculosis
contains a small protein, Pup (Rv2111c), that is
covalently conjugated to the e-NH2 groups of lysines on
several target proteins (pupylation) such as the malonyl
CoA acyl carrier protein (FabD). Pupylation of FabD was
shown to result in its recruitment to the mycobacterial
proteasome and subsequent degradation analogous to
eukaryotic ubiquitin-conjugated proteins. Searches
recovered Pup orthologs in all major actinobacteria
lineages including the basal bifidobacteria and also
sporadically in certain other bacterial lineages. The
Pup proteins were all between 50-90 residues in length
and a multiple alignment shows that they all contain a
conserved motif with a G [EQ] signature at the
C-terminus. Thus, all of them are suitable for
conjugation via the terminal glutamate or the deamidated
glutamine (as shown in the case of the Mycobacterium
Pup). The conserved globular core of Pup is predicted to
form a bihelical unit with the extreme C-terminal 6-7
residues forming a tail in the extended conformation.
Thus, Pup is structurally unrelated to the ubiquitin
fold and has convergently evolved the function of
protein modifier.
Length = 66
Score = 28.9 bits (65), Expect = 1.5
Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE---EEEEEEEEEEEEEEVRG 655
++ ++++ EEE EE E + E E+ E+ + +E ++ EE EE VR
Sbjct: 1 KDTGGGQQDDTRREEEVEETAEATADGAERREKLTEDVDDLLDEIDDVLEENAEEFVRS 59
>gnl|CDD|217952 pfam04189, Gcd10p, Gcd10p family. eIF-3 is a multi-subunit complex
that stimulates translation initiation in vitro at
several different steps. This family corresponds to the
gamma subunit if eIF3. The Yeast protein Gcd10p has also
been shown to be part of a complex with the
methyltransferase Gcd14p that is involved in modifying
tRNA.
Length = 299
Score = 31.5 bits (72), Expect = 1.5
Identities = 11/36 (30%), Positives = 15/36 (41%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
++ + E EE EEEE E EEE +
Sbjct: 263 HLKTVNWLQYFEPPAEEIEEEEPEVLPEEELNTMKP 298
Score = 29.6 bits (67), Expect = 6.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEE 624
E EE EEEE E EEE +
Sbjct: 273 FEPPAEEIEEEEPEVLPEEELNTMKPS 299
Score = 29.2 bits (66), Expect = 7.5
Identities = 11/32 (34%), Positives = 13/32 (40%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE 621
N +Q E EEEE E EEE +
Sbjct: 268 NWLQYFEPPAEEIEEEEPEVLPEEELNTMKPS 299
Score = 28.8 bits (65), Expect = 9.6
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEE 652
E EE EEEE E EEE +
Sbjct: 273 FEPPAEEIEEEEPEVLPEEELNTMKP 298
>gnl|CDD|223616 COG0542, clpA, ATP-binding subunits of Clp protease and DnaK/DnaJ
chaperones [Posttranslational modification, protein
turnover, chaperones].
Length = 786
Score = 31.9 bits (73), Expect = 1.5
Identities = 18/53 (33%), Positives = 30/53 (56%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E +E E E + E E+E E E++E +++ +E + +E E E+E E EV
Sbjct: 402 ELDELERELAQLEIEKEALEREQDEKEKKLIDEIIKLKEGRIPELEKELEAEV 454
>gnl|CDD|233192 TIGR00928, purB, adenylosuccinate lyase. This family consists of
adenylosuccinate lyase, the enzyme that catalyzes step 8
in the purine biosynthesis pathway for de novo synthesis
of IMP and also the final reaction in the two-step
sequence from IMP to AMP [Purines, pyrimidines,
nucleosides, and nucleotides, Purine ribonucleotide
biosynthesis].
Length = 435
Score = 31.6 bits (72), Expect = 1.5
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 3/62 (4%)
Query: 583 IGSPRIENIIQLIRRGE-REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
I S R+ +I L+ RG REE E E E +E + E + +E + +EEE
Sbjct: 358 IASERV--LIALVERGMGREEAYEIVRELAMGAAEVDEPDLLEFLLADERITKYLKEEEL 415
Query: 642 EE 643
E
Sbjct: 416 AE 417
>gnl|CDD|236498 PRK09401, PRK09401, reverse gyrase; Reviewed.
Length = 1176
Score = 31.8 bits (73), Expect = 1.6
Identities = 16/42 (38%), Positives = 23/42 (54%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
L+ + E E E E E+EE E+ EV++ EE+EEE
Sbjct: 837 LVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
Score = 31.8 bits (73), Expect = 1.6
Identities = 16/57 (28%), Positives = 26/57 (45%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
ER +E ++ + + E E E + E+EE E+ E E+ EE+EE
Sbjct: 824 ERYKEYKKSKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEELN 880
Score = 31.4 bits (72), Expect = 1.9
Identities = 14/47 (29%), Positives = 20/47 (42%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
++ + E E E E+EE E+ E E EE+EEE
Sbjct: 832 SKGYVLVIKLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEE 878
Score = 30.3 bits (69), Expect = 4.2
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEV 626
++EN L GE E+EE E+ E E+ EE+EEE+
Sbjct: 840 KLENGGGLELEGEFSEKEEAEKFYNNLIEVEKVEEKEEEL 879
>gnl|CDD|233973 TIGR02680, TIGR02680, TIGR02680 family protein. Members of this
protein family belong to a conserved gene four-gene
neighborhood found sporadically in a phylogenetically
broad range of bacteria: Nocardia farcinica,
Symbiobacterium thermophilum, and Streptomyces
avermitilis (Actinobacteria), Geobacillus kaustophilus
(Firmicutes), Azoarcus sp. EbN1 and Ralstonia
solanacearum (Betaproteobacteria). Proteins in this
family average over 1400 amino acids in length
[Hypothetical proteins, Conserved].
Length = 1353
Score = 31.7 bits (72), Expect = 1.6
Identities = 11/50 (22%), Positives = 19/50 (38%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+ L+RR + + E +E +EE E+ E +E E
Sbjct: 441 VALLRRRDDVADRAEATHAAARARRDELDEEAEQAAARAELADEAVHREG 490
Score = 31.3 bits (71), Expect = 2.2
Identities = 13/65 (20%), Positives = 22/65 (33%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
R + E + + + E E EEE + +EE ++ E E E+
Sbjct: 339 RADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERA 398
Query: 657 GKEEI 661
G
Sbjct: 399 GLSPA 403
Score = 30.9 bits (70), Expect = 3.0
Identities = 13/61 (21%), Positives = 20/61 (32%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
R + + + E E EEE +EE ++ E E E+ R
Sbjct: 339 RADAEALQAAAADARQAIREAESRLEEERRRLDEEAGRLDDAERELRAAREQLARAAERA 398
Query: 656 G 656
G
Sbjct: 399 G 399
Score = 30.9 bits (70), Expect = 3.0
Identities = 9/56 (16%), Positives = 18/56 (32%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHF 665
++ + E ++E +EE E+ E +E E R +
Sbjct: 448 DDVADRAEATHAAARARRDELDEEAEQAAARAELADEAVHREGARLAWVDAWQAQL 503
Score = 30.2 bits (68), Expect = 4.3
Identities = 14/58 (24%), Positives = 21/58 (36%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R+E E EEE E + E E E + E + ++ EE E +
Sbjct: 286 GRARDELETAREEERELDARTEALEREADALRTRLEALQGSPAYQDAEELERARADAE 343
>gnl|CDD|220839 pfam10661, EssA, WXG100 protein secretion system (Wss), protein
EssA. The WXG100 protein secretion system (Wss) is
responsible for the secretion of WXG100 proteins
(pfam06013) such as ESAT-6 and CFP-10 in Mycobacterium
tuberculosis or EsxA and EsxB in Staphylococcus aureus.
In S. aureus, the Wss seems to be encoded by a locus of
eight CDS, called ess (eSAT-6 secretion system). This
locus encodes, amongst several other proteins, EssA, a
protein predicted to possess one transmembrane domain.
Due to its predicted membrane location and its absolute
requirement for WXG100 protein secretion, it has been
speculated that EssA could form a secretion apparatus in
conjunction with the polytopic membrane protein EsaA,
YukC (pfam10140) and YukAB, which is a membrane-bound
ATPase containing Ftsk/SpoIIIE domains (pfam01580)
called EssC in S. aureus and Snm1/Snm2 in Mycobacterium
tuberculosis. Proteins homologous to EssA, YukC, EsaA
and YukD seem absent from mycobacteria.
Length = 145
Score = 30.2 bits (68), Expect = 1.6
Identities = 15/65 (23%), Positives = 33/65 (50%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ R + ++E+ E++ E E ++ E E +EE +++ E++E E+ E E
Sbjct: 17 FKVDRLQKTDQEKNEKKLRETELDKLGIELFTTETEEEINKKKNAEQKEMEDIENSLFSE 76
Query: 652 EVRGG 656
+ G
Sbjct: 77 DKEGN 81
>gnl|CDD|167649 PRK03963, PRK03963, V-type ATP synthase subunit E; Provisional.
Length = 198
Score = 30.9 bits (70), Expect = 1.6
Identities = 14/46 (30%), Positives = 25/46 (54%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E +E E E++ E + EE ++E E+ +EE + E + E +R
Sbjct: 5 ELIIQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEWILR 50
Score = 28.6 bits (64), Expect = 9.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
+E E E++ E EE ++E E+++EE + E + E
Sbjct: 8 IQEINREAEQKIEYILEEAQKEAEKIKEEARKRAESKAEW 47
>gnl|CDD|129130 TIGR00019, prfA, peptide chain release factor 1. This model
describes peptide chain release factor 1 (PrfA, RF-1),
and excludes the related peptide chain release factor 2
(PrfB, RF-2). RF-1 helps recognize and terminate
translation at UAA and UAG stop codons. The
mitochondrial release factors are prfA-like, although
not included above the trusted cutoff for this model.
RF-1 does not have a translational frameshift [Protein
synthesis, Translation factors].
Length = 360
Score = 31.2 bits (71), Expect = 1.7
Identities = 25/85 (29%), Positives = 48/85 (56%), Gaps = 8/85 (9%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEE-EEEEEEEEEEEEEEEVQEEEEEEEEEEEE------ 639
++E I+ R ++ +E+ +E +E EE + E E +EE++E EE+ EE EE+
Sbjct: 44 QLEEIVDCYREYQQAQEDIKEAKEILEESDPEMREMAKEELEELEEKIEELEEQLKVLLL 103
Query: 640 EEEEEEEEEEEEEVRGG-GKEEISL 663
++ +E+ E+R G G +E ++
Sbjct: 104 PKDPNDEKNVILEIRAGTGGDEAAI 128
Score = 28.9 bits (65), Expect = 9.6
Identities = 19/66 (28%), Positives = 35/66 (53%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
I + +L + + + EE + E ++ +E+ +E + EE + E E +EE EE E
Sbjct: 29 ISDQDKLRKLSKEYSQLEEIVDCYREYQQAQEDIKEAKEILEESDPEMREMAKEELEELE 88
Query: 648 EEEEEV 653
E+ EE+
Sbjct: 89 EKIEEL 94
>gnl|CDD|183859 PRK13103, secA, preprotein translocase subunit SecA; Reviewed.
Length = 913
Score = 31.5 bits (71), Expect = 1.7
Identities = 15/44 (34%), Positives = 20/44 (45%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E+ EEE E EE +Q + E E+ + EEEEE
Sbjct: 834 EDPAEEEARLRREAEELASRMQFQHAEAPGLEQPQLGEEEEEPA 877
Score = 31.1 bits (70), Expect = 2.3
Identities = 18/59 (30%), Positives = 23/59 (38%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
R E+ EEE E EE + + E E+ + EEEEE VR K
Sbjct: 832 RREDPAEEEARLRREAEELASRMQFQHAEAPGLEQPQLGEEEEEPAVAVASAPVRNEQK 890
Score = 30.3 bits (68), Expect = 4.0
Identities = 15/47 (31%), Positives = 21/47 (44%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+RR + EEE E EE + + E E+ + EEEEE
Sbjct: 831 VRREDPAEEEARLRREAEELASRMQFQHAEAPGLEQPQLGEEEEEPA 877
Score = 29.9 bits (67), Expect = 6.2
Identities = 16/54 (29%), Positives = 24/54 (44%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEE 640
R+ + +Q+ R EEE E EE + + E E+ + EEEEE
Sbjct: 824 RVLSHVQVRREDPAEEEARLRREAEELASRMQFQHAEAPGLEQPQLGEEEEEPA 877
Score = 29.5 bits (66), Expect = 6.9
Identities = 15/46 (32%), Positives = 19/46 (41%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
R E EEE E EE + + E E+ + EEEEE
Sbjct: 832 RREDPAEEEARLRREAEELASRMQFQHAEAPGLEQPQLGEEEEEPA 877
>gnl|CDD|215369 PLN02685, PLN02685, iron superoxide dismutase.
Length = 299
Score = 31.1 bits (70), Expect = 1.8
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
E S R+E+ R +RE+EE E+EEE + E E + ++ E +
Sbjct: 251 EAVSARLESAKA--RAAQREQEETRTEDEEEPDSEAVEMYLDSDIDVSEVD 299
Score = 29.6 bits (66), Expect = 5.0
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ E+EE E+EEE + E E+ + + + E +
Sbjct: 266 QREQEETRTEDEEEPDSEAVEMYLDSDIDVSEVD 299
>gnl|CDD|219572 pfam07780, Spb1_C, Spb1 C-terminal domain. This presumed domain is
found at the C-terminus of a family of FtsJ-like
methyltransferases. Members of this family are involved
in 60S ribosomal biogenesis.
Length = 212
Score = 30.7 bits (70), Expect = 1.8
Identities = 10/39 (25%), Positives = 28/39 (71%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + +E++E E V EE+E++ +++E++++++ ++ E
Sbjct: 1 ESKSDEDDEFEVVPAEEDEKKVDKDEDDDKDDIDDLTAE 39
>gnl|CDD|224508 COG1592, COG1592, Rubrerythrin [Energy production and conversion].
Length = 166
Score = 30.4 bits (69), Expect = 1.8
Identities = 17/67 (25%), Positives = 21/67 (31%), Gaps = 8/67 (11%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEE-----EEVQEEEEEEEEEEEEEEE 642
EN L E E E E E EEE +E + E+ E E
Sbjct: 71 REN---LEEAIEGETYEITEMYPVFAEVAEEEGFKEAARSFRAAAKAEKRHAEMFRGLLE 127
Query: 643 EEEEEEE 649
EE +
Sbjct: 128 RLEEGKV 134
>gnl|CDD|115185 pfam06513, DUF1103, Repeat of unknown function (DUF1103). This
family consists of several repeats of around 30 residues
in length which are found specifically in
mature-parasite-infected erythrocyte surface antigen
proteins from Plasmodium falciparum. This family often
found in conjunction with pfam00226.
Length = 215
Score = 30.6 bits (68), Expect = 1.9
Identities = 27/103 (26%), Positives = 48/103 (46%), Gaps = 6/103 (5%)
Query: 566 KTIRPSIKVWKTSDQDEIGSPRI------ENIIQLIRRGEREEEEEEEEEEEEEEEEEEE 619
K + IK T D++ P I E I + + G +E + E ++ + E EE
Sbjct: 79 KQVEDGIKENDTEGNDKVKGPEIITEEVKEEIKKQVEDGIKENDTEGNDKVKGPEIITEE 138
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
+EE + Q EE +E + E +++ E EEV+ K+++
Sbjct: 139 VKEEIKKQVEEGIKENDTEGKDKLIGPEIITEEVKEEIKKQVE 181
Score = 29.8 bits (66), Expect = 4.3
Identities = 26/102 (25%), Positives = 49/102 (48%), Gaps = 6/102 (5%)
Query: 566 KTIRPSIKVWKTSDQDEIGSPRI------ENIIQLIRRGEREEEEEEEEEEEEEEEEEEE 619
K ++ IK T D++ P I E I + + G +E + E ++ + E EE
Sbjct: 46 KKVKKGIKENDTEGNDKVKGPEIIIEEVKEEIKKQVEDGIKENDTEGNDKVKGPEIITEE 105
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+EE + Q E+ +E + E ++ + E EEV+ K+++
Sbjct: 106 VKEEIKKQVEDGIKENDTEGNDKVKGPEIITEEVKEEIKKQV 147
>gnl|CDD|219358 pfam07271, Cytadhesin_P30, Cytadhesin P30/P32. This family
consists of several Mycoplasma species specific
Cytadhesin P32 and P30 proteins. P30 has been found to
be membrane associated and localised on the tip
organelle. It is thought that it is important in
cytadherence and virulence.
Length = 279
Score = 30.8 bits (69), Expect = 1.9
Identities = 13/52 (25%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEE----EEEEEEEEEEVQEEEEEEEEEEEE 639
+ +++R E+ EE+E +E+ E+ E+ E++ E+ EE +E +
Sbjct: 92 LPIVKRKEKRLLEEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQ 143
Score = 30.4 bits (68), Expect = 2.9
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE+E +E+ E++Q E+ E++ E + EE +E
Sbjct: 104 EEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEP 141
Score = 28.9 bits (64), Expect = 7.8
Identities = 11/40 (27%), Positives = 23/40 (57%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE+E +E+ E+ + + E+ E++ E + EE +E +
Sbjct: 104 EEKERQEQMAEQLQRISEQNEQQAIEIDPTEEVNTQEPTQ 143
>gnl|CDD|226809 COG4372, COG4372, Uncharacterized protein conserved in bacteria
with the myosin-like domain [Function unknown].
Length = 499
Score = 31.1 bits (70), Expect = 1.9
Identities = 13/58 (22%), Positives = 22/58 (37%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R R E + E+ E E E E + +E E +E + + ++E R
Sbjct: 84 RALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAKAQQELAR 141
Score = 31.1 bits (70), Expect = 2.2
Identities = 12/64 (18%), Positives = 28/64 (43%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
++++I +R E + E+ E E E E ++ ++E E +E + +
Sbjct: 75 QLDDIRPQLRALRTELGTAQGEKRAAETEREAARSELQKARQEREAVRQELAAARQNLAK 134
Query: 647 EEEE 650
++E
Sbjct: 135 AQQE 138
>gnl|CDD|184886 PRK14892, PRK14892, putative transcription elongation factor Elf1;
Provisional.
Length = 99
Score = 29.3 bits (66), Expect = 2.0
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEE 647
E +++ +E + EE EEE E E E E
Sbjct: 74 LEGKIEIKERKNEETEEENEIEGESE 99
Score = 28.5 bits (64), Expect = 3.9
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEE 645
E + E++E + EE EEE E E E E
Sbjct: 74 LEGKIEIKERKNEETEEENEIEGESE 99
Score = 28.1 bits (63), Expect = 4.9
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEE 621
I L G+ E +E + EE EEE E E E E
Sbjct: 70 IDLYLEGKIEIKERKNEETEEENEIEGESE 99
Score = 27.3 bits (61), Expect = 9.8
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEE 649
E + E +E + EE EEE E E E E
Sbjct: 74 LEGKIEIKERKNEETEEENEIEGESE 99
>gnl|CDD|206732 cd04169, RF3, Release Factor 3 (RF3) protein involved in the
terminal step of translocation in bacteria. Peptide
chain release factor 3 (RF3) is a protein involved in
the termination step of translation in bacteria.
Termination occurs when class I release factors (RF1 or
RF2) recognize the stop codon at the A-site of the
ribosome and activate the release of the nascent
polypeptide. The class II release factor RF3 then
initiates the release of the class I RF from the
ribosome. RF3 binds to the RF/ribosome complex in the
inactive (GDP-bound) state. GDP/GTP exchange occurs,
followed by the release of the class I RF. Subsequent
hydrolysis of GTP to GDP triggers the release of RF3
from the ribosome. RF3 also enhances the efficiency of
class I RFs at less preferred stop codons and at stop
codons in weak contexts.
Length = 268
Score = 31.0 bits (71), Expect = 2.0
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
++E E + EE + ++ + +E E+ E+ EE E V G G E
Sbjct: 176 DKEIYLYERGAGGAIKAPEETKGLDDPKLDELLGEDLAEQLREELELVEGAGPE 229
>gnl|CDD|211344 cd02867, PseudoU_synth_TruB_4, Pseudouridine synthase homolog 4.
This group consists of Eukaryotic TruB proteins similar
to Saccharomyces cerevisiae Pus4. S. cerevisiae Pus4,
makes psi55 in the T loop of both cytoplasmic and
mitochondrial tRNAs. Psi55 is almost universally
conserved. Pseudouridine synthases catalyze the
isomerization of specific uridines in an RNA molecule to
pseudouridines (5-ribosyluracil, psi).
Length = 312
Score = 30.9 bits (70), Expect = 2.0
Identities = 21/73 (28%), Positives = 30/73 (41%), Gaps = 8/73 (10%)
Query: 599 EREEEEEEEEEE--------EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
R EEE ++ E +E + E E + + EE E EE + + E EEE
Sbjct: 191 TRTVEEEGKQYERSVVKMLGKELKTFAEVTELTATAEGDPVEEVEATHEESKRKSEVEEE 250
Query: 651 EEVRGGGKEEISL 663
+ G E SL
Sbjct: 251 ANEKSLGPEARSL 263
>gnl|CDD|220821 pfam10602, RPN7, 26S proteasome subunit RPN7. RPN7 (known as the
non ATPase regulatory subunit 6 in higher eukaryotes) is
one of the lid subunits of the 26S proteasome and has
been shown in Saccharomyces cerevisiae to be required
for structural integrity. The 26S proteasome is is
involved in the ATP-dependent degradation of
ubiquitinated proteins.
Length = 174
Score = 30.2 bits (69), Expect = 2.0
Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 1/43 (2%)
Query: 624 EEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFY 666
EE++++ EEE EE + E ++ +E +EE+R +++ H+
Sbjct: 6 EELRKKNEEELEELDAELKDAKENLGKEEIR-RALLDLAEHYA 47
>gnl|CDD|218301 pfam04871, Uso1_p115_C, Uso1 / p115 like vesicle tethering protein,
C terminal region. Also known as General vesicular
transport factor, Transcytosis associate protein (TAP)
and Vesicle docking protein, this myosin-shaped molecule
consists of an N-terminal globular head region, a
coiled-coil tail which mediates dimerisation, and a
short C-terminal acidic region. p115 tethers COP1
vesicles to the Golgi by binding the coiled coil
proteins giantin (on the vesicles) and GM130 (on the
Golgi), via its C-terminal acidic region. It is required
for intercisternal transport in the golgi stack. This
family consists of the acidic C-terminus, which binds to
the golgins giantin and GM130. p115 is thought to
juxtapose two membranes by binding giantin with one
acidic region, and GM130 with another.
Length = 136
Score = 29.9 bits (67), Expect = 2.0
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 13/77 (16%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEE-------EEEEEEEEEEE------EEVQEEEE 631
S ++ + EE +E ++E++ ++EE+ + +E V +E
Sbjct: 60 SFSTTPDLEAEKEKLDEEALKESQKEQDDLLVLLADQEEKVTKYKEKLKDLGVPVSNDEP 119
Query: 632 EEEEEEEEEEEEEEEEE 648
E +E E+EEE+EEE
Sbjct: 120 LEAIGDESEDEEEDEEE 136
>gnl|CDD|217573 pfam03462, PCRF, PCRF domain. This domain is found in peptide
chain release factors.
Length = 115
Score = 29.4 bits (67), Expect = 2.0
Identities = 22/60 (36%), Positives = 33/60 (55%), Gaps = 5/60 (8%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE---EVRG--GGKE 659
E EEE++ E EE EEE EE+++E EE E+E + +++ E+R GG E
Sbjct: 1 ELLEEEDDPELREEAEEELEELEKELEELEKELLNLLLPLDPYDDKNAILEIRAGAGGTE 60
>gnl|CDD|236413 PRK09210, PRK09210, RNA polymerase sigma factor RpoD; Validated.
Length = 367
Score = 31.1 bits (71), Expect = 2.1
Identities = 17/66 (25%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE-----EEEEEEEEEEEEEE 647
+LI +G++ +E E+ E + ++ +++ E E+ +EE + EE
Sbjct: 17 ELIEKGKKRGTLTYDEIAEKLIPFELDSDQIDDLYERLEDAGISIVDEEGNPSSAQVVEE 76
Query: 648 EEEEEV 653
EEEEE+
Sbjct: 77 EEEEEL 82
>gnl|CDD|226127 COG3599, DivIVA, Cell division initiation protein [Cell division
and chromosome partitioning].
Length = 212
Score = 30.5 bits (69), Expect = 2.1
Identities = 10/56 (17%), Positives = 18/56 (32%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
E +E E EE E + + + +E + + + E E R
Sbjct: 156 DEILRSTVDEVEAANEEAERLADAAQADADRLRDECDIYVDTKLAELETRLSGTRR 211
Score = 29.3 bits (66), Expect = 5.7
Identities = 11/55 (20%), Positives = 23/55 (41%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++E+ +E +E E EE E + + + +E + + + E E R
Sbjct: 151 KQEDWDEILRSTVDEVEAANEEAERLADAAQADADRLRDECDIYVDTKLAELETR 205
Score = 28.9 bits (65), Expect = 6.1
Identities = 8/50 (16%), Positives = 19/50 (38%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+E E EE E + + + + +++E + + + E E
Sbjct: 160 RSTVDEVEAANEEAERLADAAQADADRLRDECDIYVDTKLAELETRLSGT 209
Score = 28.6 bits (64), Expect = 8.1
Identities = 12/64 (18%), Positives = 25/64 (39%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
QL + + +E +E E EE E + + + + +E + + + E E
Sbjct: 145 AQLASAKQEDWDEILRSTVDEVEAANEEAERLADAAQADADRLRDECDIYVDTKLAELET 204
Query: 652 EVRG 655
+ G
Sbjct: 205 RLSG 208
>gnl|CDD|222290 pfam13654, AAA_32, AAA domain. This family includes a wide variety
of AAA domains including some that have lost essential
nucleotide binding residues in the P-loop.
Length = 509
Score = 31.3 bits (72), Expect = 2.1
Identities = 30/78 (38%), Positives = 40/78 (51%), Gaps = 18/78 (23%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEE------------------EEEEVQEEEEEEEEEE 637
R+ E EEE +E+ EE EE EEE +E + E + EEE E EE
Sbjct: 116 RKEEIEEEFQEKREEAFEELEEEAKEKGFALVRTPGGFVFAPLKDGEPLTEEEFEALPEE 175
Query: 638 EEEEEEEEEEEEEEEVRG 655
E EE EE+ +E EEE++
Sbjct: 176 EREELEEKIDELEEELQE 193
>gnl|CDD|224077 COG1155, NtpA, Archaeal/vacuolar-type H+-ATPase subunit A [Energy
production and conversion].
Length = 588
Score = 31.1 bits (71), Expect = 2.1
Identities = 10/51 (19%), Positives = 20/51 (39%), Gaps = 1/51 (1%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
+ G ++N+ L R + + E++ E + EE +E E
Sbjct: 536 DSGVT-MDNLASLPVREKLSRMKIVPEDQVESYYSDLLEEIHKEYTNFIGE 585
>gnl|CDD|100111 cd05833, Ribosomal_P2, Ribosomal protein P2. This subfamily
represents the eukaryotic large ribosomal protein P2.
Eukaryotic P1 and P2 are functionally equivalent to the
bacterial protein L7/L12, but are not homologous to
L7/L12. P2 is located in the L12 stalk, with proteins
P1, P0, L11, and 28S rRNA. P1 and P2 are the only
proteins in the ribosome to occur as multimers, always
appearing as sets of heterodimers. Recent data indicate
that eukaryotes have four copies (two heterodimers),
while most archaeal species contain six copies of L12p
(three homodimers). Bacteria may have four or six copies
of L7/L12 (two or three homodimers) depending on the
species. Experiments using S. cerevisiae P1 and P2
indicate that P1 proteins are positioned more internally
with limited reactivity in the C-terminal domains, while
P2 proteins seem to be more externally located and are
more likely to interact with other cellular components.
In lower eukaryotes, P1 and P2 are further subdivided
into P1A, P1B, P2A, and P2B, which form P1A/P2B and
P1B/P2A heterodimers. Some plants have a third
P-protein, called P3, which is not homologous to P1 and
P2. In humans, P1 and P2 are strongly autoimmunogenic.
They play a significant role in the etiology and
pathogenesis of systemic lupus erythema (SLE). In
addition, the ribosome-inactivating protein
trichosanthin (TCS) interacts with human P0, P1, and P2,
with its primary binding site in the C-terminal region
of P2. TCS inactivates the ribosome by depurinating a
specific adenine in the sarcin-ricin loop of 28S rRNA.
Length = 109
Score = 29.2 bits (66), Expect = 2.1
Identities = 9/23 (39%), Positives = 15/23 (65%)
Query: 635 EEEEEEEEEEEEEEEEEEVRGGG 657
++EE++EE EEE ++ G G
Sbjct: 84 AAAKKEEKKEESEEESDDDMGFG 106
Score = 28.4 bits (64), Expect = 5.2
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 598 GEREEEEEEEEEEEEEEEE 616
++EE++EE EEE ++
Sbjct: 83 AAAAKKEEKKEESEEESDD 101
>gnl|CDD|221775 pfam12794, MscS_TM, Mechanosensitive ion channel inner membrane
domain 1. The small mechanosensitive channel, MscS, is
a part of the turgor-driven solute efflux system that
protects bacteria from lysis in the event of osmotic
shock. The MscS protein alone is sufficient to form a
functional mechanosensitive channel gated directly by
tension in the lipid bilayer. The MscS proteins are
heptamers of three transmembrane subunits with seven
converging M3 domains, and this domain is one of the
inner membrane domains.
Length = 339
Score = 31.0 bits (71), Expect = 2.1
Identities = 11/27 (40%), Positives = 12/27 (44%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEV 626
R E + EEEEE E E EE
Sbjct: 267 RAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.7 bits (70), Expect = 2.3
Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 10/49 (20%)
Query: 593 QLIRRG----------EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
LI+R ER + + E + EEEEE E E EE E
Sbjct: 245 NLIKRWLLIARRRLAYERAKAKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 30.7 bits (70), Expect = 2.4
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
+R E + EEEEE E E EE E +++
Sbjct: 264 KAKRAEILAQRAEEEEESSEGAAETIEEPELDLET 298
Score = 29.9 bits (68), Expect = 4.1
Identities = 11/29 (37%), Positives = 13/29 (44%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ E + EEEEE E E EE E
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPE 293
Score = 29.5 bits (67), Expect = 5.3
Identities = 14/36 (38%), Positives = 16/36 (44%), Gaps = 3/36 (8%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E + EEEEE E E EE E+ E IS
Sbjct: 268 AEILAQRAEEEEESSEGAAETIEEPEL---DLETIS 300
Score = 29.5 bits (67), Expect = 6.7
Identities = 13/35 (37%), Positives = 16/35 (45%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ E Q EEEEE E E EE E + E +
Sbjct: 265 AKRAEILAQRAEEEEESSEGAAETIEEPELDLETI 299
>gnl|CDD|237478 PRK13709, PRK13709, conjugal transfer nickase/helicase TraI;
Provisional.
Length = 1747
Score = 31.3 bits (71), Expect = 2.1
Identities = 12/72 (16%), Positives = 26/72 (36%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
G + ++ G E E + + EE E E +E + E + + +
Sbjct: 1618 GRVWGDIPDNSVQPGAGNGEPVTAEVLAQRQAEEAIRRETERRADEIVRKMAENKPDLPD 1677
Query: 644 EEEEEEEEEVRG 655
+ E+ ++ G
Sbjct: 1678 GKTEQAVRDIAG 1689
>gnl|CDD|218574 pfam05389, MecA, Negative regulator of genetic competence (MecA).
This family contains several bacterial MecA proteins.
The development of competence in Bacillus subtilis is
regulated by growth conditions and several regulatory
genes. In complex media competence development is poor,
and there is little or no expression of late competence
genes. Mec mutations permit competence development and
late competence gene expression in complex media,
bypassing the requirements for many of the competence
regulatory genes. The mecA gene product acts negatively
in the development of competence. Null mutations in mecA
allow expression of a late competence gene comG, under
conditions where it is not normally expressed, including
in complex media and in cells mutant for several
competence regulatory genes. Overexpression of MecA
inhibits comG transcription.
Length = 212
Score = 30.6 bits (70), Expect = 2.2
Identities = 10/50 (20%), Positives = 28/50 (56%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+ + + ++ EE+E+E+ + E++ ++ +E E+ ++ +EE E
Sbjct: 74 FVTKSDSDDGLNLEEDEDEDISDLLEQKFRDKGLDEMEDTLDDSKEESTE 123
Score = 29.9 bits (68), Expect = 3.6
Identities = 10/45 (22%), Positives = 27/45 (60%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ ++ EE+E+E+ + E++ +++ +E E+ ++ +EE E
Sbjct: 79 DSDDGLNLEEDEDEDISDLLEQKFRDKGLDEMEDTLDDSKEESTE 123
Score = 29.1 bits (66), Expect = 5.7
Identities = 9/45 (20%), Positives = 27/45 (60%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ ++ EE+E+E+ + ++++ ++ +E E+ ++ +EE E
Sbjct: 79 DSDDGLNLEEDEDEDISDLLEQKFRDKGLDEMEDTLDDSKEESTE 123
Score = 29.1 bits (66), Expect = 6.9
Identities = 9/44 (20%), Positives = 26/44 (59%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ ++ EE+E+E++ + E++ ++ +E E+ ++ +EE
Sbjct: 79 DSDDGLNLEEDEDEDISDLLEQKFRDKGLDEMEDTLDDSKEEST 122
>gnl|CDD|147374 pfam05160, DSS1_SEM1, DSS1/SEM1 family. This family contains the
breast cancer tumour suppressor BRCA2-interacting
protein DSS1 and its homologue SEM1, both of which are
short acidic proteins. DSS1 has been shown to be a
conserved component of the Rae1 mediated mRNA export
pathway in Schizosaccharomyces pombe.
Length = 63
Score = 28.0 bits (63), Expect = 2.2
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
EE++E E+ E+ EEE E+E EE
Sbjct: 12 EEDDEFEDFPVEDWPEEETEKENGNNLWEE 41
Score = 28.0 bits (63), Expect = 2.3
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+++E+ +++ EE++E E+ E+ EEE E+E EE
Sbjct: 1 QKKEQVKKKLLEEDDEFEDFPVEDWPEEETEKENGNNLWEE 41
Score = 28.0 bits (63), Expect = 2.4
Identities = 11/33 (33%), Positives = 24/33 (72%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+++E+ ++++ EE++E E+ E+ EEE E+E
Sbjct: 1 QKKEQVKKKLLEEDDEFEDFPVEDWPEEETEKE 33
Score = 28.0 bits (63), Expect = 2.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
EE++E E+ E+ EEE E+E EE
Sbjct: 12 EEDDEFEDFPVEDWPEEETEKENGNNLWEE 41
Score = 27.6 bits (62), Expect = 3.3
Identities = 11/32 (34%), Positives = 23/32 (71%)
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+++E+V+++ EE++E E+ E+ EEE E+
Sbjct: 1 QKKEQVKKKLLEEDDEFEDFPVEDWPEEETEK 32
Score = 27.6 bits (62), Expect = 3.3
Identities = 13/41 (31%), Positives = 26/41 (63%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+++E+ +++ EE++E E+ V++ EEE E+E EE
Sbjct: 1 QKKEQVKKKLLEEDDEFEDFPVEDWPEEETEKENGNNLWEE 41
Score = 26.9 bits (60), Expect = 6.0
Identities = 12/30 (40%), Positives = 17/30 (56%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
EE++E E+ E+ EEE E+E EE
Sbjct: 12 EEDDEFEDFPVEDWPEEETEKENGNNLWEE 41
Score = 26.9 bits (60), Expect = 6.2
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
+++E+ +++ EE++E E+ E+ EEE E+E EE
Sbjct: 1 QKKEQVKKKLLEEDDEFEDFPVEDWPEEETEKENGNNLWEE 41
Score = 26.9 bits (60), Expect = 6.6
Identities = 12/41 (29%), Positives = 25/41 (60%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+++E+ +++ EE++E E+ E+ +EE E+E EE
Sbjct: 1 QKKEQVKKKLLEEDDEFEDFPVEDWPEEETEKENGNNLWEE 41
Score = 26.5 bits (59), Expect = 8.0
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+++E+ + + EE++E E+ E+ EEE E+E
Sbjct: 1 QKKEQVKKKLLEEDDEFEDFPVEDWPEEETEKE 33
Score = 26.5 bits (59), Expect = 8.3
Identities = 11/33 (33%), Positives = 22/33 (66%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+++E+ ++ EE++E E+ E+ EEE E+E
Sbjct: 1 QKKEQVKKKLLEEDDEFEDFPVEDWPEEETEKE 33
>gnl|CDD|220653 pfam10252, PP28, Casein kinase substrate phosphoprotein PP28. This
domain is a region of 70 residues conserved in proteins
from plants to humans and contains a serine/arginine
rich motif. In rats the full protein is a casein kinase
substrate, and this region contains phosphorylation
sites for both cAMP-dependent protein kinase and casein
kinase II.
Length = 82
Score = 28.9 bits (65), Expect = 2.2
Identities = 14/59 (23%), Positives = 28/59 (47%), Gaps = 9/59 (15%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEE--------EEVQEEEEEEEEEEEEEEEE 643
+L RR EREE E+++ E + + + E+ ++++ EE E E++
Sbjct: 24 ELSRR-EREEIEKQKARERYMKLHAQGKTEQARADLARLALIRKQREEAAARREAEKKA 81
>gnl|CDD|237046 PRK12297, obgE, GTPase CgtA; Reviewed.
Length = 424
Score = 30.8 bits (71), Expect = 2.2
Identities = 17/42 (40%), Positives = 23/42 (54%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
EE E EEEEV+EE + EEEE++ +E+ V G
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDGVFVVSG 368
Score = 30.8 bits (71), Expect = 2.8
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
EE E EEEE EEEV + EEEE++ +E+
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
Score = 29.3 bits (67), Expect = 8.5
Identities = 15/36 (41%), Positives = 20/36 (55%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
EE E EEEE EEE + EEEE++ +E+
Sbjct: 327 EETPEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
Score = 28.9 bits (66), Expect = 9.1
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
E EEEE EEE + EEEE++ +E+
Sbjct: 330 PEFPLEEEEVEEEVYYKFEEEEKDFTITRDEDG 362
>gnl|CDD|223079 PHA03419, PHA03419, E4 protein; Provisional.
Length = 200
Score = 30.3 bits (68), Expect = 2.2
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E++++E E+ + E+ ++ E + E E E E+ E+ E EV GG
Sbjct: 96 EKKKKETEKPAQGGEKPDQGPEAKGEGEGHEPEDPPPEDTPPPPGGEGEVEGGPS 150
>gnl|CDD|234456 TIGR04074, bacter_Hen1, 3' terminal RNA ribose
2'-O-methyltransferase Hen1. Members of this protein
family are bacterial Hen1, a 3' terminal RNA ribose
2'-O-methyltransferase that acts in bacterial RNA
repair. All members of the seed alignment belong to a
cassette with the RNA repair enzyme polynucleotide
kinase-phosphatase (Pnkp). Chemically similar Hen1 in
eukaryotes acts instead on small regulatory RNAs
[Transcription, RNA processing, Protein synthesis, tRNA
and rRNA base modification].
Length = 462
Score = 31.1 bits (71), Expect = 2.2
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 6/33 (18%)
Query: 632 EEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
E +E E EE E EE +EE E SL+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKP------PSLN 267
Score = 30.7 bits (70), Expect = 2.9
Identities = 14/40 (35%), Positives = 17/40 (42%), Gaps = 7/40 (17%)
Query: 594 LIRRG-------EREEEEEEEEEEEEEEEEEEEEEEEEEV 626
L R R E +E E EE E EE +EE E+
Sbjct: 225 LKHRRSLARDALARLAEADEAEPEEAETEEAQEEAAEKPP 264
Score = 30.4 bits (69), Expect = 3.2
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEVR 654
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEKPPS 265
Score = 29.6 bits (67), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEE 649
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 29.6 bits (67), Expect = 6.5
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 629 EEEEEEEEEEEEEEEEEEEEEE 650
E +E E EE E EE +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
Score = 28.8 bits (65), Expect = 9.6
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEE 636
E +E E EE E +E +EE E+
Sbjct: 241 EADEAEPEEAETEEAQEEAAEK 262
>gnl|CDD|177447 PHA02664, PHA02664, hypothetical protein; Provisional.
Length = 534
Score = 31.1 bits (70), Expect = 2.3
Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 19/82 (23%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEE---VQEEEEEEEEEEE----------EEEEE 643
R + +E++ +E+E +E + E++ + E+E + ++ E ++
Sbjct: 449 RADSDEDDMDEQESGDERADGEDDSDSSYSYSTTSSEDESDSADDSWGDESDSGIEHDDG 508
Query: 644 ------EEEEEEEEEVRGGGKE 659
EEEEEEE V G E
Sbjct: 509 GVGQAIEEEEEEERAVLGAVAE 530
>gnl|CDD|109608 pfam00558, Vpu, Vpu protein. The Vpu protein contains an
N-terminal transmembrane spanning region and a
C-terminal cytoplasmic region. The HIV-1 Vpu protein
stimulates virus production by enhancing the release of
viral particles from infected cells. The VPU protein
binds specifically to CD4.
Length = 81
Score = 28.5 bits (64), Expect = 2.3
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEE 615
I +I+ IR ER E+ E +EEEE
Sbjct: 38 EILRLIKRIR--ERAEDSGNESNGDEEEE 64
>gnl|CDD|130366 TIGR01299, synapt_SV2, synaptic vesicle protein SV2. This model
describes a tightly conserved subfamily of the larger
family of sugar (and other) transporters described by
PFAM model pfam00083. Members of this subfamily include
closely related forms SV2A and SV2B of synaptic vesicle
protein from vertebrates and a more distantly related
homolog (below trusted cutoff) from Drosophila
melanogaster. Members are predicted to have two sets of
six transmembrane helices.
Length = 742
Score = 31.1 bits (70), Expect = 2.3
Identities = 21/92 (22%), Positives = 41/92 (44%), Gaps = 12/92 (13%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEE------EEEEEEEEVQEEEEEEEE 635
E+ + + + + R + E + E+E++++ + E +EEE E
Sbjct: 21 EVKKHAAKKVNKALDRAQDEYSQRSYSRFEDEDDDDDFPAPADGYSRGEAADDEEEGEAS 80
Query: 636 EEEEEEEEEEEEEEEEEVRG------GGKEEI 661
+ E +E++E E E +G GGK+EI
Sbjct: 81 SDATEGHDEDDEIYEGEYQGIPRAENGGKDEI 112
>gnl|CDD|227446 COG5116, RPN2, 26S proteasome regulatory complex component
[Posttranslational modification, protein turnover,
chaperones].
Length = 926
Score = 31.1 bits (70), Expect = 2.3
Identities = 9/44 (20%), Positives = 21/44 (47%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
R +++ +E+ ++E + E E E E ++ EE+ +
Sbjct: 795 ARAKQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAP 838
Score = 29.5 bits (66), Expect = 7.2
Identities = 10/59 (16%), Positives = 25/59 (42%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
++ +E+ ++E + E E E E Q EE+ + ++++ + + R
Sbjct: 798 KQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKKKPYKVDNMTR 856
Score = 29.5 bits (66), Expect = 7.4
Identities = 9/49 (18%), Positives = 22/49 (44%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+++ +E+ ++E E E E E ++ EE+ + K++
Sbjct: 798 KQKPKEKGPNDKEIKIESPSVETEGERCTIKQREEKGIDAPAILNVKKK 846
>gnl|CDD|223052 PHA03346, PHA03346, US22 family homolog; Provisional.
Length = 520
Score = 30.9 bits (70), Expect = 2.3
Identities = 17/128 (13%), Positives = 41/128 (32%), Gaps = 27/128 (21%)
Query: 534 LCTPEDFKPFVTALMNSEWQSLWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQ 593
LC + F+ + WD+ + +W +
Sbjct: 357 LCRDDRFRA--------DMLRTWDDWD----------AFALWHAR--------VLRGEFA 390
Query: 594 LIRR-GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
RR E E+E + E ++++E ++E++++ E+ + +E+
Sbjct: 391 ERRRPRGPPENEDEADGGGGLAPPPEPPRPPPPPFPDDDDEGDDEDDDDWEDLGFDLDED 450
Query: 653 VRGGGKEE 660
K+
Sbjct: 451 DVYDLKDV 458
>gnl|CDD|184416 PRK13955, mscL, large-conductance mechanosensitive channel;
Provisional.
Length = 130
Score = 29.8 bits (67), Expect = 2.3
Identities = 10/28 (35%), Positives = 18/28 (64%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEE 618
+++ + ++EEE+EEE E +EEE
Sbjct: 86 FVKVFNKLTSKKEEEKEEEIPEPTKEEE 113
Score = 28.6 bits (64), Expect = 4.6
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 631 EEEEEEEEEEEEEEEEEEEEEEVR 654
++EEE+EEE E +EEE E+R
Sbjct: 96 KKEEEKEEEIPEPTKEEELLGEIR 119
>gnl|CDD|236090 PRK07764, PRK07764, DNA polymerase III subunits gamma and tau;
Validated.
Length = 824
Score = 31.1 bits (71), Expect = 2.3
Identities = 8/60 (13%), Positives = 17/60 (28%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E ++ + + EEEE E++ ++E+ R
Sbjct: 743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAE 802
Score = 30.3 bits (69), Expect = 3.7
Identities = 8/61 (13%), Positives = 17/61 (27%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
++ + + EEEE E++ ++E R +
Sbjct: 743 PEPDDPPDPAGAPAQPPPPPAPAPAAAPAAAPPPSPPSEEEEMAEDDAPSMDDEDRRDAE 802
Query: 659 E 659
E
Sbjct: 803 E 803
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational
modification, protein turnover, chaperones].
Length = 623
Score = 31.1 bits (71), Expect = 2.4
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
+ + + E EEE+E + EEE++E + + E +E
Sbjct: 480 TKGDLDLELLEEEDEADSEEEKKEFKPLLERVKE 513
Score = 31.1 bits (71), Expect = 2.5
Identities = 14/38 (36%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEE-EEEVQE 628
+ I +G+ + E EEE+E + EEE++E + E V+E
Sbjct: 476 FKSITKGDLDLELLEEEDEADSEEEKKEFKPLLERVKE 513
Score = 30.7 bits (70), Expect = 2.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ + E EEE+E EEE++E + E +E ++ ++VR
Sbjct: 482 GDLDLELLEEEDEADSEEEKKEFKPLLERVKEILGDKVKDVR 523
>gnl|CDD|222440 pfam13897, GOLD_2, Golgi-dynamics membrane-trafficking. Sec14-like
Golgi-trafficking domain The GOLD domain is always found
combined with lipid- or membrane-association domains.
Length = 136
Score = 29.7 bits (67), Expect = 2.4
Identities = 14/30 (46%), Positives = 17/30 (56%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+ V E +EEEEEE EEEE E + E
Sbjct: 45 DAVSVHVSESSDEEEEEEAEEEEAETGDVE 74
Score = 29.3 bits (66), Expect = 3.7
Identities = 15/27 (55%), Positives = 17/27 (62%)
Query: 633 EEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E +EEEEEE EEEE E +V G K
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKS 79
Score = 28.1 bits (63), Expect = 8.4
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 625 EVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E +EEEEEE EEEE E + E + + R
Sbjct: 53 ESSDEEEEEEAEEEEAETGDVEAGSKSQSR 82
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 30.9 bits (70), Expect = 2.4
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
GE +E E E E + E ++ ++ +EE E E+EEEEEE EE
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEYEE 447
Score = 30.6 bits (69), Expect = 2.7
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E +E E E E + E ++ Q+ +EE E E+EEEEEE EE
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEYEE 447
Score = 30.6 bits (69), Expect = 2.7
Identities = 19/47 (40%), Positives = 26/47 (55%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E +E E E E + E Q+ ++ +EE E E+EEEEEE EE
Sbjct: 401 EGMDEMEFTEAESNMNDLVSEYQQYQDATADEEGEYEDEEEEEEYEE 447
>gnl|CDD|240578 cd12951, RRP7_Rrp7A, RRP7 domain ribosomal RNA-processing protein 7
homolog A (Rrp7A) and similar proteins. The family
corresponds to the RRP7 domain of Rrp7A, also termed
gastric cancer antigen Zg14, and similar proteins which
are yeast ribosomal RNA-processing protein 7 (Rrp7p)
homologs mainly found in Metazoans. The cellular
function of Rrp7A remains unclear currently. Rrp7A
harbors an N-terminal RNA recognition motif (RRM), also
termed RBD (RNA binding domain) or RNP
(ribonucleoprotein domain), and a C-terminal RRP7
domain.
Length = 129
Score = 29.6 bits (67), Expect = 2.5
Identities = 17/46 (36%), Positives = 27/46 (58%), Gaps = 10/46 (21%)
Query: 623 EEEVQEE-----EEEEEEEEEEEEEEEEEEEEEEE-----VRGGGK 658
E+Q E EE ++EEEEE+EE+E+E E +E+ + G +
Sbjct: 16 PAELQSEIDEYMEEYDKEEEEEKEEKEKEAEPDEDGWVTVTKKGRR 61
Score = 28.0 bits (63), Expect = 7.1
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E + E +E ++E ++EEEEE+EE+E+E E +E+
Sbjct: 16 PAELQSEIDEYMEEYDKEEEEEKEEKEKEAEPDED 50
Score = 28.0 bits (63), Expect = 8.5
Identities = 16/35 (45%), Positives = 25/35 (71%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E + E +E EE ++EEEEE+EE+E+E E +E+
Sbjct: 16 PAELQSEIDEYMEEYDKEEEEEKEEKEKEAEPDED 50
Score = 28.0 bits (63), Expect = 8.5
Identities = 16/59 (27%), Positives = 33/59 (55%), Gaps = 14/59 (23%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEE--------------EEEEVQEEEEEEEEEEEEEEEE 643
E ++EEEEE+EE+E+E E +E+ +E + E+E+++++++E
Sbjct: 28 EEYDKEEEEEKEEKEKEAEPDEDGWVTVTKKGRRPKTARKESVAAKAAEKEKKKKKKKE 86
>gnl|CDD|218581 pfam05416, Peptidase_C37, Southampton virus-type processing
peptidase. Corresponds to Merops family C37.
Norwalk-like viruses (NLVs), including the Southampton
virus, cause acute non-bacterial gastroenteritis in
humans. The NLV genome encodes three open reading frames
(ORFs). ORF1 encodes a polyprotein, which is processed
by the viral protease into six proteins.
Length = 535
Score = 31.0 bits (70), Expect = 2.5
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 8/56 (14%)
Query: 596 RRGEREEEEEEEEEEEEE--------EEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
RRG +EE +E ++ EE E E+ E EEE+ E + E + EEEE +
Sbjct: 250 RRGLSDEEYDEYKKIREERGGKYSIQEYLEDRERYEEELAERQATEADFCEEEEAK 305
>gnl|CDD|217843 pfam04012, PspA_IM30, PspA/IM30 family. This family includes PspA
a protein that suppresses sigma54-dependent
transcription. The PspA protein, a negative regulator of
the Escherichia coli phage shock psp operon, is produced
when virulence factors are exported through secretins in
many Gram-negative pathogenic bacteria and its homologue
in plants, VIPP1, plays a critical role in thylakoid
biogenesis, essential for photosynthesis. Activation of
transcription by the enhancer-dependent bacterial
sigma(54) containing RNA polymerase occurs through ATP
hydrolysis-driven protein conformational changes enabled
by activator proteins that belong to the large AAA(+)
mechanochemical protein family. It has been shown that
PspA directly and specifically acts upon and binds to
the AAA(+) domain of the PspF transcription activator.
Length = 220
Score = 30.4 bits (69), Expect = 2.5
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 10/85 (11%)
Query: 580 QDEIGSPRIENIIQLI---RRGEREEEEEEEEEEEEEEEEE------EEEEEEEEVQEEE 630
Q E+G R + + Q+I ++ ER+ EE++E+ ++ E + EE E + E
Sbjct: 36 QSELGKAR-QALAQVIARQKQLERKLEEQKEQAKKLENKARAALTKGNEELAREALAEIA 94
Query: 631 EEEEEEEEEEEEEEEEEEEEEEVRG 655
E++ E E + ++ E++R
Sbjct: 95 TLEKQAEALETQLTQQRSAVEQLRK 119
>gnl|CDD|203773 pfam07819, PGAP1, PGAP1-like protein. The sequences found in this
family are similar to PGAP1. This is an endoplasmic
reticulum membrane protein with a catalytic serine
containing motif that is conserved in a number of
lipases. PGAP1 functions as a GPI inositol-deacylase;
this deacylation is important for the efficient
transport of GPI-anchored proteins from the endoplasmic
reticulum to the Golgi body.
Length = 225
Score = 30.4 bits (69), Expect = 2.5
Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)
Query: 550 SEWQSLWDNVPNTNKLKTIRPSIK-VWKTSDQDEI 583
++ SL VP+TN L + SI VW + D I
Sbjct: 174 DDYSSLEALVPSTNGLSVLTTSIPDVWLSIDHLAI 208
>gnl|CDD|223097 COG0018, ArgS, Arginyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 577
Score = 31.1 bits (71), Expect = 2.5
Identities = 15/55 (27%), Positives = 27/55 (49%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+R E E + E + ++++E+ +EEE EE E+ E +EE E+
Sbjct: 179 KRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLESGDEEAEL 233
Score = 29.5 bits (67), Expect = 6.3
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
E+ E E + E V+ ++ EE+ +EEE EE E+ E G EE L
Sbjct: 178 EKRGREALGLTPEPDGYLGEYYVKIAKDLEEDPGNDEEEAREEVEKLES----GDEEAEL 233
>gnl|CDD|204405 pfam10146, zf-C4H2, Zinc finger-containing protein. This is a
family of proteins which appears to have a highly
conserved zinc finger domain at the C terminal end,
described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is
predicted to contain a coiled coil. Members are
annotated as being tumour-associated antigen HCA127 in
humans but this could not confirmed.
Length = 215
Score = 30.2 bits (68), Expect = 2.6
Identities = 15/63 (23%), Positives = 24/63 (38%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ I I E E ++ + E E + E ++E E + E EE +
Sbjct: 55 LRQIHADINDMETEIKQSKSELERRMGKIARMHGEYNPLKESINEMRKLELGLEELPQLH 114
Query: 648 EEE 650
EEE
Sbjct: 115 EEE 117
>gnl|CDD|218481 pfam05177, RCSD, RCSD region. Proteins contain this region include
C.elegans UNC-89. This region is found repeated in
UNC-89 and shows conservation in prolines, lysines and
glutamic acids. Proteins with RCSD are involved in
muscle M-line assembly, but the function of this region
RCSD is not clear.
Length = 101
Score = 29.1 bits (64), Expect = 2.6
Identities = 14/68 (20%), Positives = 34/68 (50%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+ E++E+ E+ + + + ++E+ E+ EE + ++E+ E+ EE+ +
Sbjct: 32 AKSPEKKEKSPEKVDGKPKSPTKKEKSPEKSATEEVKSPTKKEKSPEKVEEKPASPTKKE 91
Query: 655 GGGKEEIS 662
K+E S
Sbjct: 92 RVQKKEKS 99
>gnl|CDD|220178 pfam09321, DUF1978, Domain of unknown function (DUF1978). Members
of this family are found in various hypothetical
proteins produced by the bacterium Chlamydia pneumoniae.
Their exact function has not, as yet, been identified.
Length = 241
Score = 30.6 bits (69), Expect = 2.6
Identities = 22/95 (23%), Positives = 36/95 (37%), Gaps = 5/95 (5%)
Query: 558 NVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEE 617
L+T I+V E E+ + E+E EE E + EE +E
Sbjct: 145 VSSYARDLETALDHIEVEYVQCVREQ-----EDYWKEEDVKEQELREEGGERKRLEEIQE 199
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E+ ++ ++ + EE E+ E E E
Sbjct: 200 GLESLEDLLKATKKRLDFAEEHLEKAELEFTAEVS 234
>gnl|CDD|227674 COG5384, Mpp10, U3 small nucleolar ribonucleoprotein component
[Translation, ribosomal structure and biogenesis].
Length = 569
Score = 30.8 bits (69), Expect = 2.6
Identities = 31/147 (21%), Positives = 58/147 (39%), Gaps = 25/147 (17%)
Query: 530 TPFKLCTPEDFKPFVTALMNSEWQSLWDNVPNTNKLKTIR-PSIKVWKTSDQDEIGSPRI 588
+ K T +D K ++ +++N+ ++ +L I + + Q ++ I
Sbjct: 10 SILKDPTSKDVKAYIDSVINTCKNG---SITKKAELDEITVDGLDANQVWWQVKLVLDSI 66
Query: 589 -ENIIQLIRRGEREEEE-------EEEEEEEEEEE-------------EEEEEEEEEEVQ 627
++IQ I+ + + EE E EE E E EE+ + +
Sbjct: 67 DGDLIQGIQELKDPSLDGSTLNSSSGEESELEEAESVFKEKQMLSADVSEIEEQSNDSLS 126
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E +EE ++E+ E EE EE R
Sbjct: 127 ENDEEPSMDDEKTSAEAAREEFAEEKR 153
Score = 29.3 bits (65), Expect = 8.6
Identities = 19/109 (17%), Positives = 32/109 (29%), Gaps = 22/109 (20%)
Query: 577 TSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
T + +E + + + + E EE+ + E +EE E+ E
Sbjct: 86 TLNSSSGEESELEEAESVFKEKQMLSADVSEIEEQSNDSLSENDEEPSMDDEKTSAEAAR 145
Query: 637 EEEEEEEEEE----------------------EEEEEEVRGGGKEEISL 663
EE EE+ E+ E G E+I
Sbjct: 146 EEFAEEKRIPDPYGINDKFFDLEKFNRDTLAAEDSNEASEGSEDEDIDY 194
>gnl|CDD|219038 pfam06459, RR_TM4-6, Ryanodine Receptor TM 4-6. This region covers
TM regions 4-6 of the ryanodine receptor 1 family.
Length = 217
Score = 30.1 bits (68), Expect = 2.7
Identities = 16/43 (37%), Positives = 21/43 (48%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
N I L + EEEEEE ++ EE+EEE V +E
Sbjct: 139 NFILLFYKVSTSPAEEEEEEGSGSGDDGEEDEEEGIVYFVLQE 181
Score = 29.3 bits (66), Expect = 5.8
Identities = 25/95 (26%), Positives = 31/95 (32%), Gaps = 30/95 (31%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEE-----EEEEEEEEVQ--------------- 627
+ + Q G+ EEE EE E E + E EEEE V
Sbjct: 2 MPDPTQDEVHGDVPEEEGAEEVEPEGSGRDLPETGEGEEEEVGVDAFGLDMKKEGGGYGH 61
Query: 628 ----------EEEEEEEEEEEEEEEEEEEEEEEEE 652
E E EE E E+ E +EE E
Sbjct: 62 DASPGLGDMSEVEPEEPPTPEGAPAEKRELKEEGE 96
Score = 29.3 bits (66), Expect = 6.1
Identities = 15/41 (36%), Positives = 21/41 (51%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E EE E E+ E +EE EE + E E+ ++ G K
Sbjct: 72 EVEPEEPPTPEGAPAEKRELKEEGEEPKSEPEKADLEDGEK 112
Score = 28.5 bits (64), Expect = 9.3
Identities = 17/50 (34%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 626 VQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFY---VLYVLS 672
V EEEEEE ++ EE+EEE + +E + Y VL L+
Sbjct: 147 VSTSPAEEEEEEGSGSGDDGEEDEEEGIVYFVLQEST--GYMEPVLRFLA 194
>gnl|CDD|219280 pfam07052, Hep_59, Hepatocellular carcinoma-associated antigen 59.
This family represents a conserved region approximately
100 residues long within mammalian hepatocellular
carcinoma-associated antigen 59 and similar proteins.
Family members are found in a variety of eukaryotes,
mainly as hypothetical proteins.
Length = 102
Score = 28.8 bits (65), Expect = 2.7
Identities = 14/75 (18%), Positives = 32/75 (42%), Gaps = 9/75 (12%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE---------EEEEEE 648
G+R+E+ + EEE + + + + + ++ ++ + E+E ++ EE
Sbjct: 8 GQRDEDAHMMKYIEEELAKRKGQAADADAEDSDKAANNLKRAEDELYALPEHLKVKKNEE 67
Query: 649 EEEEVRGGGKEEISL 663
GG E+ L
Sbjct: 68 MLSNQMLGGIPEVDL 82
>gnl|CDD|203444 pfam06424, PRP1_N, PRP1 splicing factor, N-terminal. This domain
is specific to the N-terminal part of the prp1 splicing
factor, which is involved in mRNA splicing (and possibly
also poly(A)+ RNA nuclear export and cell cycle
progression). This domain is specific to the N terminus
of the RNA splicing factor encoded by prp1. It is
involved in mRNA splicing and possibly also poly(A)and
RNA nuclear export and cell cycle progression.
Length = 131
Score = 29.6 bits (67), Expect = 2.7
Identities = 18/70 (25%), Positives = 37/70 (52%), Gaps = 10/70 (14%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEE----------EEEEEEEVQEEEEEEEEEEEEEEEEE 644
R G ++EE+E+ + ++ + E E+EE + + E +E +E ++ E+
Sbjct: 25 ARDGVDIDDEEDEDPKRYQDGDNEGLFSDGKYDDEDEEADRIYESIDERMDERRKKRREQ 84
Query: 645 EEEEEEEEVR 654
+E+EE E+ R
Sbjct: 85 KEKEEIEKYR 94
Score = 28.0 bits (63), Expect = 6.9
Identities = 17/73 (23%), Positives = 31/73 (42%), Gaps = 5/73 (6%)
Query: 568 IRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEE--EEEEEEEEE 625
I + D + L G+ ++E+EE + E +E +E ++ E
Sbjct: 27 DGVDIDDEEDEDPKRYQDG---DNEGLFSDGKYDDEDEEADRIYESIDERMDERRKKRRE 83
Query: 626 VQEEEEEEEEEEE 638
+E+EE E+ EE
Sbjct: 84 QKEKEEIEKYREE 96
>gnl|CDD|147001 pfam04629, ICA69, Islet cell autoantigen ICA69, C-terminal domain.
This family includes a 69 kD protein which has been
identified as an islet cell autoantigen in type I
diabetes mellitus. Its precise function is unknown.
Length = 237
Score = 30.4 bits (68), Expect = 2.7
Identities = 14/53 (26%), Positives = 27/53 (50%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
E+++EE+ E + Q ++ EEE++E E + EE + ++ S H
Sbjct: 19 EKKKEEQTEGSDLAAQLNKQLISLEEEKQERESASKTEEGHSQLSSFDKGSFH 71
>gnl|CDD|225657 COG3115, ZipA, Cell division protein [Cell division and chromosome
partitioning].
Length = 324
Score = 30.6 bits (69), Expect = 2.7
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 6/105 (5%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ------EE 629
S Q +I P+ I + + ++E+ EE + +E Q +
Sbjct: 94 YASAQIKIPVPQPPQISDPPAHPQPTQPALDQEQPPEEARQPVLPQEAPAPQPVHSAAPQ 153
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLHFYVLYVLSKG 674
+ + E++ + EE E + +L V +
Sbjct: 154 PAVQTVQPAVPEQQVQPEEVVEPAPEVKRPPRKDTVIILNVAAHH 198
>gnl|CDD|206733 cd04170, EF-G_bact, Elongation factor G (EF-G) family.
Translocation is mediated by EF-G (also called
translocase). The structure of EF-G closely resembles
that of the complex between EF-Tu and tRNA. This is an
example of molecular mimicry; a protein domain evolved
so that it mimics the shape of a tRNA molecule. EF-G in
the GTP form binds to the ribosome, primarily through
the interaction of its EF-Tu-like domain with the 50S
subunit. The binding of EF-G to the ribosome in this
manner stimulates the GTPase activity of EF-G. On GTP
hydrolysis, EF-G undergoes a conformational change that
forces its arm deeper into the A site on the 30S
subunit. To accommodate this domain, the peptidyl-tRNA
in the A site moves to the P site, carrying the mRNA and
the deacylated tRNA with it. The ribosome may be
prepared for these rearrangements by the initial binding
of EF-G as well. The dissociation of EF-G leaves the
ribosome ready to accept the next aminoacyl-tRNA into
the A site. This group contains only bacterial members.
Length = 268
Score = 30.3 bits (69), Expect = 2.7
Identities = 23/79 (29%), Positives = 34/79 (43%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ E E E EE +E+ E EE+ E E +EE E+ EE E EEE G +
Sbjct: 176 DPGEPSVEIEIPEELKEKVAEAREELLEAVAETDEELMEKYLEEGELTEEELRAGLRRAL 235
Query: 661 ISLHFYVLYVLSKGKIAGL 679
+ ++ S G+
Sbjct: 236 RAGLIVPVFFGSALTGIGV 254
Score = 29.1 bits (66), Expect = 7.1
Identities = 20/51 (39%), Positives = 24/51 (47%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
E E EE +E+ E EE E V E +EE E+ EE E EEE
Sbjct: 176 DPGEPSVEIEIPEELKEKVAEAREELLEAVAETDEELMEKYLEEGELTEEE 226
>gnl|CDD|234173 TIGR03346, chaperone_ClpB, ATP-dependent chaperone ClpB. Members
of this protein family are the bacterial ATP-dependent
chaperone ClpB. This protein belongs to the AAA family,
ATPases associated with various cellular activities
(pfam00004). This molecular chaperone does not act as a
protease, but rather serves to disaggregate misfolded
and aggregated proteins [Protein fate, Protein folding
and stabilization].
Length = 852
Score = 31.1 bits (71), Expect = 2.7
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 1/65 (1%)
Query: 591 IIQL-IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
IIQL I R ++E++E +E E+ E+E E EEE + EE+ + E+ + ++ +EE
Sbjct: 414 IIQLEIEREALKKEKDEASKERLEDLEKELAELEEEYADLEEQWKAEKAAIQGIQQIKEE 473
Query: 650 EEEVR 654
E+VR
Sbjct: 474 IEQVR 478
>gnl|CDD|129022 smart00786, SHR3_chaperone, ER membrane protein SH3. This family
of proteins are membrane localised chaperones that are
required for correct plasma membrane localisation of
amino acid permeases (AAPs). Shr3 prevents AAPs proteins
from aggregating and assists in their correct folding.
In the absence of Shr3, AAPs are retained in the ER.
Length = 196
Score = 30.0 bits (68), Expect = 2.7
Identities = 8/36 (22%), Positives = 18/36 (50%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
ER++ +++EE EE +E ++ ++ E
Sbjct: 157 AERKDAKQKEEFAAEERKEALAAAAKKSATPQKVET 192
>gnl|CDD|217971 pfam04222, DUF416, Protein of unknown function (DUF416). This is a
bacterial protein family of unknown function. Proteins
in this family adopt an alpha helical structure. Genome
context analysis has suggested a high probability of a
functional association with histidine kinases, which
implicates proteins in this family to play a role in
signalling (information from TOPSAN 2Q9R).
Length = 190
Score = 29.9 bits (68), Expect = 2.8
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 2/45 (4%)
Query: 587 RIENIIQLIRRG--EREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
NI QL R E +E EE +EE +E E EEE + Q E
Sbjct: 111 EAVNISQLSRATVANFIETQEGEELSDEELKEHELMEEELDFQWE 155
>gnl|CDD|219513 pfam07685, GATase_3, CobB/CobQ-like glutamine amidotransferase
domain.
Length = 157
Score = 29.9 bits (68), Expect = 2.8
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
Query: 34 DYDLLIIGRSKDL--DLLLQRFQHTLDEIHKWSDLNGTIF 71
D DL+I+ K DL L R + + + ++ G I
Sbjct: 7 DADLVILPGGKPTIQDLALLRNSGLDEALREHAEAGGPIL 46
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 30.9 bits (70), Expect = 2.8
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E E E E + V E ++ ++ EEE E +EEEE E
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEAYEI 445
Score = 29.7 bits (67), Expect = 4.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+E E E E + E Q+ ++ EEE E +EEEE E
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEAYEI 445
Score = 29.0 bits (65), Expect = 8.6
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E E E E + E ++ Q+ EEE E +EEEE E
Sbjct: 404 DEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEAYEI 445
Score = 29.0 bits (65), Expect = 9.0
Identities = 16/46 (34%), Positives = 23/46 (50%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
GE +E E E E + E ++ ++ EEE E +EEEE E
Sbjct: 400 GEGMDEMEFTEAESNMNDLVSEYQQYQDATVEEEGEFDEEEEAYEI 445
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 30.9 bits (70), Expect = 2.8
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 6/82 (7%)
Query: 562 TNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEE 621
T +L+ ++ D + + IE + I+R +R+ EE E E+ +EE +
Sbjct: 286 TRELQNYLDELEF----DPERLNE--IEERLAQIKRLKRKYGASVEEVLEYAEKIKEELD 339
Query: 622 EEEEVQEEEEEEEEEEEEEEEE 643
+ ++ E E EEE ++ EEE
Sbjct: 340 QLDDSDESLEALEEEVDKLEEE 361
Score = 29.7 bits (67), Expect = 5.6
Identities = 23/99 (23%), Positives = 40/99 (40%), Gaps = 19/99 (19%)
Query: 547 LMNSEWQ-SLWDNVPNTN-KLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEE 604
L + Q L D N K+K R + W + Q QL R ++E+E
Sbjct: 140 LFRPDEQRQLLDTFAGANEKVKAYRELYQAWLKARQ------------QLKDRQQKEQEL 187
Query: 605 EEEEEE-----EEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+ + EE EE + + E+E ++ E++ E+
Sbjct: 188 AQRLDFLQFQLEELEEADLQPGEDEALEAEQQRLSNLEK 226
>gnl|CDD|223266 COG0188, GyrA, Type IIA topoisomerase (DNA gyrase/topo II,
topoisomerase IV), A subunit [DNA replication,
recombination, and repair].
Length = 804
Score = 30.7 bits (70), Expect = 2.8
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 17/79 (21%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEE------------EEEEEEVQEEEEEE-----E 634
++ + E E+ E+E +E E+E + E+ ++E E++++ +E
Sbjct: 428 LRRLTGLEEEKIEKELKELEKEIADLEKILASEERLLDIIKKELLEIKKKFGDERRTEIV 487
Query: 635 EEEEEEEEEEEEEEEEEEV 653
EEEE+E E+E+ EE+ V
Sbjct: 488 EEEEDEIEDEDLIAEEDVV 506
>gnl|CDD|222800 PHA00458, PHA00458, single-stranded DNA-binding protein.
Length = 233
Score = 30.1 bits (68), Expect = 2.9
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+E+EE+ E + + ++EEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 30.1 bits (68), Expect = 2.9
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
+E+EE+ E + ++EEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 30.1 bits (68), Expect = 3.4
Identities = 14/39 (35%), Positives = 26/39 (66%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+E+EE+ E + + ++EEE E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 29.8 bits (67), Expect = 3.6
Identities = 14/39 (35%), Positives = 27/39 (69%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E+EE+ E + + ++EEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 29.8 bits (67), Expect = 3.9
Identities = 14/39 (35%), Positives = 28/39 (71%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+E+EE+ E + ++ ++EEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 29.8 bits (67), Expect = 4.2
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+E+EE+ E + + Q+EEE +E++EEE EE+E+ +
Sbjct: 194 DEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
Score = 28.6 bits (64), Expect = 8.9
Identities = 15/45 (33%), Positives = 29/45 (64%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
GE + +E+EE+ E + + ++EE +E++EEE EE+E+ +
Sbjct: 188 GEDDWADEDEEDGYVASEAKARKPQDEEEWDEDDEEESEEDEDGD 232
>gnl|CDD|235124 PRK03427, PRK03427, cell division protein ZipA; Provisional.
Length = 333
Score = 30.4 bits (69), Expect = 2.9
Identities = 4/55 (7%), Positives = 17/55 (30%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+ + + + ++ + + + E E ++ + +E V
Sbjct: 144 QPVSPQVAPAPQPVHSAPQPAQQAFQPAEPVAAPQPEPVAEPAPVMDKPKRKEAV 198
>gnl|CDD|144972 pfam01576, Myosin_tail_1, Myosin tail. The myosin molecule is a
multi-subunit complex made up of two heavy chains and
four light chains it is a fundamental contractile
protein found in all eukaryote cell types. This family
consists of the coiled-coil myosin heavy chain tail
region. The coiled-coil is composed of the tail from two
molecules of myosin. These can then assemble into the
macromolecular thick filament. The coiled-coil region
provides the structural backbone the thick filament.
Length = 859
Score = 30.8 bits (70), Expect = 2.9
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++ RR R E E++E + EE E E EE +V + E + E E E+EEE
Sbjct: 459 LEKARR--RLEAEKDELQAALEEAEAALELEESKVLRAQVELSQIRSEIERRLAEKEEEF 516
Query: 652 E 652
E
Sbjct: 517 E 517
>gnl|CDD|237549 PRK13897, PRK13897, type IV secretion system component VirD4;
Provisional.
Length = 606
Score = 30.5 bits (69), Expect = 3.0
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 623 EEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.5 bits (69), Expect = 3.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEE 625
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.5 bits (69), Expect = 3.5
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEE 624
EE E E EE+EE+++E+++
Sbjct: 577 NNNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.3
Identities = 10/29 (34%), Positives = 17/29 (58%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E EE E E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 30.1 bits (68), Expect = 4.9
Identities = 10/29 (34%), Positives = 18/29 (62%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
E EE E + E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.0 bits (65), Expect = 8.9
Identities = 11/29 (37%), Positives = 18/29 (62%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
E EE E V E EE+EE+++E+++
Sbjct: 578 NNEASEETETITVPENNEEDEEDDDEDDD 606
Score = 29.0 bits (65), Expect = 9.9
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEE 652
EE E E EE+EE+++E+++
Sbjct: 582 SEETETITVPENNEEDEEDDDEDDD 606
>gnl|CDD|217443 pfam03234, CDC37_N, Cdc37 N terminal kinase binding. Cdc37 is a
molecular chaperone required for the activity of
numerous eukaryotic protein kinases. This domain
corresponds to the N terminal domain which binds
predominantly to protein kinases and is found N terminal
to the Hsp (Heat shocked protein) 90-binding domain
pfam08565. Expression of a construct consisting of only
the N-terminal domain of Saccharomyces pombe Cdc37
results in cellular viability. This indicates that
interactions with the cochaperone Hsp90 may not be
essential for Cdc37 function.
Length = 172
Score = 29.8 bits (67), Expect = 3.3
Identities = 11/41 (26%), Positives = 27/41 (65%)
Query: 611 EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
++E +E+ EE+Q+ ++ ++E++E ++ +E E+EE
Sbjct: 116 KDEVDEKNGAALIEELQKHRDKLKKEQKELLKKLDELEKEE 156
Score = 29.4 bits (66), Expect = 4.4
Identities = 10/41 (24%), Positives = 27/41 (65%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
++E +E+ EE ++ +++++E++E ++ +E E+EE
Sbjct: 116 KDEVDEKNGAALIEELQKHRDKLKKEQKELLKKLDELEKEE 156
>gnl|CDD|180960 PRK07400, PRK07400, 30S ribosomal protein S1; Reviewed.
Length = 318
Score = 30.2 bits (68), Expect = 3.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++ EE + + + + E EE EEE EEE EE
Sbjct: 283 DKAEEMAAKYRQMLLAQAEGGEEPEEEMEEEVAAEE 318
Score = 29.8 bits (67), Expect = 5.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
++ EE + ++ + E EE EEE EEE EE
Sbjct: 283 DKAEEMAAKYRQMLLAQAEGGEEPEEEMEEEVAAEE 318
Score = 29.0 bits (65), Expect = 8.3
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
++ EE + + + + E EE EEE EEE EE
Sbjct: 283 DKAEEMAAKYRQMLLAQAEGGEEPEEEMEEEVAAEE 318
>gnl|CDD|148810 pfam07412, Geminin, Geminin. This family contains the eukaryotic
protein geminin (approximately 200 residues long).
Geminin inhibits DNA replication by preventing the
incorporation of MCM complex into prereplication
complex, and is degraded during the mitotic phase of the
cell cycle. It has been proposed that geminin inhibits
DNA replication during S, G2, and M phases and that
geminin destruction at the metaphase-anaphase transition
permits replication in the succeeding cell cycle.
Length = 200
Score = 29.8 bits (67), Expect = 3.3
Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 25/102 (24%)
Query: 570 PSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEE---EEEEEEEEEEEEEEV 626
PS + WK E+ R + + + ++ E+ +E E+++EE ++E EE E E V
Sbjct: 104 PSSQYWK-----EVAEERRKALYEALQENEKLHKEIEQKDEEIARLKKENEELAELAEHV 158
Query: 627 Q-----------------EEEEEEEEEEEEEEEEEEEEEEEE 651
Q E + +E + EEEE E+ EEE E
Sbjct: 159 QYMAEMIERLTGEPPDNLESLKSQEFDSEEEEAEDSLEEESE 200
>gnl|CDD|187810 cd09679, Cas10_III, CRISPR/Cas system-associated protein Cas10.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Multidomain protein with permuted HD nuclease domain,
palm domain and Zn-ribbon; MTH326-like has inactivated
polymerase catalytic domain; alr1562 and slr7011 -
predicted only on the basis of size, presence of HD
domain, and location with RAMPs in one operon; signature
gene for type III; also known as Crm2 family.
Length = 475
Score = 30.5 bits (69), Expect = 3.3
Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 4/95 (4%)
Query: 531 PFKLCTPEDFKPFVTALMNSEWQSLWDNVPNTNKL---KTIRPSIKVWKTSDQDEIGSPR 587
+ T + F + + + L + L K + P K DE+
Sbjct: 226 KLEKETEQYSL-FAKDDLEEDLKLLLEAGERLCPLCLIKRLLPERLKEKLVLIDEVIKRS 284
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEE 622
N + + E EE E E+E E +
Sbjct: 285 KRNREEPRLKYENFREELRELLEKEPEIVYLFIKA 319
>gnl|CDD|237538 PRK13876, PRK13876, conjugal transfer coupling protein TraG;
Provisional.
Length = 663
Score = 30.7 bits (70), Expect = 3.3
Identities = 8/45 (17%), Positives = 21/45 (46%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
G+ + + + + E E EE E E E + +++++++
Sbjct: 591 GDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 29.5 bits (67), Expect = 7.0
Identities = 8/50 (16%), Positives = 23/50 (46%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+ +++ + + + E E EE V E E E + +++++++
Sbjct: 586 AAAADGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
Score = 29.1 bits (66), Expect = 10.0
Identities = 7/46 (15%), Positives = 23/46 (50%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ +++ + + + E E EE+ E E E + +++++++
Sbjct: 590 DGDDDGDPDNGGIRRQPELPEHEEIVPEPRPPENEFDLLDDDDDDD 635
>gnl|CDD|181442 PRK08476, PRK08476, F0F1 ATP synthase subunit B'; Validated.
Length = 141
Score = 29.3 bits (66), Expect = 3.3
Identities = 17/70 (24%), Positives = 38/70 (54%), Gaps = 2/70 (2%)
Query: 578 SDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
SD EI IE I++ R E + ++ + +EE E++ E ++ E++ + E ++
Sbjct: 55 SDVSEIEH-EIETILKNARE-EANKIRQKAIAKAKEEAEKKIEAKKAELESKYEAFAKQL 112
Query: 638 EEEEEEEEEE 647
+++E +E+
Sbjct: 113 ANQKQELKEQ 122
>gnl|CDD|236851 PRK11114, PRK11114, cellulose synthase regulator protein;
Provisional.
Length = 756
Score = 30.7 bits (70), Expect = 3.4
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 19 GFAVTGVGMTCNCDQ----DYDLLIIGRSKDLDLLLQRFQHTLDEIHKWSDLNGTIFSTD 74
G+ V +T + D D DLL+IG LL + S + +
Sbjct: 562 GYPALRVTVTDDGDVIQLADKDLLVIGGLPPQALLDDWRIDLPVQATGESWVKTPLRQIA 621
Query: 75 P 75
P
Sbjct: 622 P 622
>gnl|CDD|237868 PRK14960, PRK14960, DNA polymerase III subunits gamma and tau;
Provisional.
Length = 702
Score = 30.4 bits (68), Expect = 3.5
Identities = 17/62 (27%), Positives = 24/62 (38%), Gaps = 5/62 (8%)
Query: 578 SDQDEIGSPR-----IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
+ + +P +E I Q E E E E E E E E E E E E E +
Sbjct: 386 AQTAQEITPVSAVQPVEVISQPAMVEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPEPQPN 445
Query: 633 EE 634
++
Sbjct: 446 QD 447
>gnl|CDD|224160 COG1239, ChlI, Mg-chelatase subunit ChlI [Coenzyme metabolism].
Length = 423
Score = 30.5 bits (69), Expect = 3.6
Identities = 14/64 (21%), Positives = 21/64 (32%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
GE + +E E E E +E E ++ + E E + EE R
Sbjct: 338 GEIDADELEAAFEGGSEVTTDEGESASASLADKPKLGELEAFDRIARARGEESSSERARA 397
Query: 658 KEEI 661
E
Sbjct: 398 LELA 401
Score = 29.7 bits (67), Expect = 6.0
Identities = 13/63 (20%), Positives = 20/63 (31%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
IR E + +E E E E +E E ++ + E E + EE
Sbjct: 333 IRTVLGEIDADELEAAFEGGSEVTTDEGESASASLADKPKLGELEAFDRIARARGEESSS 392
Query: 655 GGG 657
Sbjct: 393 ERA 395
Score = 28.9 bits (65), Expect = 9.6
Identities = 11/65 (16%), Positives = 20/65 (30%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
E +E E ++ + E E + EE E E E + + +
Sbjct: 354 EVTTDEGESASASLADKPKLGELEAFDRIARARGEESSSERARALELALEGLYLAKRVDR 413
Query: 662 SLHFY 666
+ Y
Sbjct: 414 VVGEY 418
>gnl|CDD|221533 pfam12329, TMF_DNA_bd, TATA element modulatory factor 1 DNA
binding. This is the middle region of a family of TATA
element modulatory factor 1 proteins conserved in
eukaryotes that contains at its N-terminal section a
number of leucine zippers that could potentially form
coiled coil structures. The whole proteins bind to the
TATA element of some RNA polymerase II promoters and
repress their activity. by competing with the binding of
TATA binding protein. TMFs are evolutionarily conserved
golgins that bind Rab6, a ubiquitous ras-like
GTP-binding Golgi protein, and contribute to Golgi
organisation in animal and plant cells.
Length = 74
Score = 28.0 bits (63), Expect = 3.6
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E I QL+ GE+ ++E + ++ + +E E+E+ E +++ E+ E+E E EE +
Sbjct: 12 EQIAQLMEEGEKLSKKELKHNNTIKKLRAKNKELEKEIAELKKKLEKLEKELENLEERLK 71
Query: 649 EEE 651
E
Sbjct: 72 RAE 74
>gnl|CDD|216652 pfam01698, FLO_LFY, Floricaula / Leafy protein. This family
consists of various plant development proteins which are
homologues of floricaula (FLO) and Leafy (LFY) proteins
which are floral meristem identity proteins. Mutations
in the sequences of these proteins affect flower and
leaf development.
Length = 382
Score = 30.4 bits (69), Expect = 3.6
Identities = 11/34 (32%), Positives = 22/34 (64%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEE 629
R+ +E E+++++E+E+++ E E EE Q E
Sbjct: 192 RKRSKELREDDDDDEDEDDDGEGGGEGGEERQRE 225
>gnl|CDD|220838 pfam10659, Trypan_glycop_C, Trypanosome variant surface
glycoprotein C-terminal domain. The trypanosome
parasite expresses these proteins to evade the immune
response.
Length = 98
Score = 28.6 bits (64), Expect = 3.7
Identities = 7/60 (11%), Positives = 30/60 (50%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++ + + E +E+ + +++E++ + + +E + ++ + E E+ +G ++
Sbjct: 2 NKKNKTKTECKEKGCKWDKKEDDGKCKPKEGKAKKNGAPVTQTAGTETTTEKCKGKKDKK 61
>gnl|CDD|218970 pfam06278, DUF1032, Protein of unknown function (DUF1032). This
family consists of several conserved eukaryotic proteins
of unknown function.
Length = 565
Score = 30.3 bits (68), Expect = 3.7
Identities = 20/76 (26%), Positives = 37/76 (48%), Gaps = 8/76 (10%)
Query: 575 WKTSDQDEIGSPRIENIIQLIRR--GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
WK + R+E Q++RR ER +EE++ EE+ E+ E++ ++ +
Sbjct: 342 WKHVKE------RLETQRQMLRRRGAERWLPDEEQKLWPLEEDRLEDSVEDDGDADDFSD 395
Query: 633 EEEEEEEEEEEEEEEE 648
E+ E E + EE+
Sbjct: 396 PEDYLEPPEGLDPEEQ 411
>gnl|CDD|227543 COG5218, YCG1, Chromosome condensation complex Condensin, subunit G
[Chromatin structure and dynamics / Cell division and
chromosome partitioning].
Length = 885
Score = 30.3 bits (68), Expect = 3.7
Identities = 9/65 (13%), Positives = 27/65 (41%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
I +++ R +EE + +++ E ++ + +E+ + +EE+++
Sbjct: 820 IRRLMEQDDGDPRSQEELCDVKKDLENMSIQDTSTVAKNVSFVLPDEKSDAMSIDEEDKD 879
Query: 648 EEEEE 652
E
Sbjct: 880 SESFS 884
Score = 29.9 bits (67), Expect = 5.1
Identities = 11/76 (14%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 584 GSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE-------EEEEE 636
+ R+ + R E+++ + +EE + +++ E ++ + +E+ +
Sbjct: 810 DTSRLSIGEVIRRLMEQDDGDPRSQEELCDVKKDLENMSIQDTSTVAKNVSFVLPDEKSD 869
Query: 637 EEEEEEEEEEEEEEEE 652
+EE+++ E E
Sbjct: 870 AMSIDEEDKDSESFSE 885
>gnl|CDD|215214 PLN02381, PLN02381, valyl-tRNA synthetase.
Length = 1066
Score = 30.6 bits (69), Expect = 3.7
Identities = 12/50 (24%), Positives = 31/50 (62%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E E E++ EEE E ++++EE+ +E+E ++ + ++E + + + ++
Sbjct: 2 SRTESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQ 51
Score = 30.3 bits (68), Expect = 4.2
Identities = 11/64 (17%), Positives = 37/64 (57%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E++ EEE E ++++EE+ +E+E ++++ ++E + + + ++ + ++ + K
Sbjct: 9 EKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRK 68
Query: 659 EEIS 662
++
Sbjct: 69 RDVE 72
Score = 29.9 bits (67), Expect = 5.6
Identities = 11/60 (18%), Positives = 34/60 (56%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+L R+ ++EE+ +E+E ++ + ++E + + + Q + ++ E++ + + E+E
Sbjct: 17 ELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDGTNVPKKSEKKSRKRDVEDENP 76
Score = 29.9 bits (67), Expect = 6.6
Identities = 11/42 (26%), Positives = 29/42 (69%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E E++ EEE++ ++++EE+ +E+E ++ + ++E + +
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAK 46
Score = 29.1 bits (65), Expect = 9.6
Identities = 12/51 (23%), Positives = 30/51 (58%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG 657
E E E++ EEE E +++ +E+ +E+E ++ + ++E + + + + G
Sbjct: 5 ESEAEKKILTEEELERKKKKEEKAKEKELKKLKAAQKEAKAKLQAQQASDG 55
>gnl|CDD|234013 TIGR02785, addA_Gpos, helicase-exonuclease AddAB, AddA subunit,
Firmicutes type. AddAB, also called RexAB, substitutes
for RecBCD in several bacterial lineages. These DNA
recombination proteins act before synapse and are
particularly important for DNA repair of double-stranded
breaks by homologous recombination. The term AddAB is
used broadly, with AddA homologous between the
Firmicutes (as modeled here) and the
alphaproteobacteria, while the partner AddB proteins
show no strong homology across the two groups of species
[DNA metabolism, DNA replication, recombination, and
repair].
Length = 1230
Score = 30.4 bits (69), Expect = 3.7
Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 1/58 (1%)
Query: 612 EEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGG-KEEISLHFYVL 668
E + + EE E EE EEEE +EE E ++ ++E + K I F V
Sbjct: 507 PENPDNKTEELLYEKLLIEEAEEEEIDEEAEILDKAQQEATMVAERIKALIKEGFKVY 564
>gnl|CDD|227598 COG5273, COG5273, Uncharacterized protein containing DHHC-type Zn
finger [General function prediction only].
Length = 309
Score = 30.1 bits (68), Expect = 3.7
Identities = 12/74 (16%), Positives = 19/74 (25%), Gaps = 8/74 (10%)
Query: 457 FKLCTPEDFKPFVTALMNSEWQNLWDNVPNTNKLKTIRPSIKKDITFMWCPSHCGIKGNE 516
F LC + T + +S L ++ L TI+ S W
Sbjct: 242 FPLCRESNL--PFTNIFDSSEGALPLDLGIGQNLSTIKGSNA----LYWLTP--LHTNYC 293
Query: 517 LVDVAAKNPTTGTT 530
+ T
Sbjct: 294 NSYDFSLRSDTLAE 307
>gnl|CDD|226454 COG3945, COG3945, Uncharacterized conserved protein [Function
unknown].
Length = 189
Score = 29.8 bits (67), Expect = 3.7
Identities = 14/56 (25%), Positives = 21/56 (37%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
++E+ E EE EV E +EE +E E + EE+ E
Sbjct: 134 DKEDNVLFPFAESTLSEELNEVNSECFRFDEETFKETIHERYAKLLEELEKSYSEY 189
>gnl|CDD|118064 pfam09528, Ehrlichia_rpt, Ehrlichia tandem repeat (Ehrlichia_rpt).
This entry represents 77 residues of an 80 amino acid
(240 nucleotide) tandem repeat, found in a variable
number of copies in an immunodominant outer membrane
protein of Ehrlichia chaffeensis, a tick-borne obligate
intracellular pathogen.
Length = 707
Score = 30.4 bits (67), Expect = 3.8
Identities = 22/59 (37%), Positives = 29/59 (49%), Gaps = 3/59 (5%)
Query: 599 EREEEEEEEEEEEEEEE---EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
ERE E EE + E E+EE E E++E E E +E E E+EE EV+
Sbjct: 354 ERESEIEEHQGETEKEEGIPESHAEDDEIASDPSIEHFSAEVGKEVSETEKEESNPEVK 412
Score = 30.4 bits (67), Expect = 4.2
Identities = 33/137 (24%), Positives = 54/137 (39%), Gaps = 14/137 (10%)
Query: 538 EDFKPFVTALMNSEWQSLWDNVPNTNKLKT--------IRPSIKVWKTSDQDEIG----- 584
ED +P V + + V T K ++ ++P++ + E+G
Sbjct: 77 EDLEPAVAESVEHSSSEVGKEVSETEKEESNPEVKAEDLQPAVDGDIAHHESEVGDKPAK 136
Query: 585 -SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
S EN GE +++ EE +EE+E E +EE E + E+ + + E
Sbjct: 137 TSKEEENPEIEAEDGEPAKDDGIEESHQEEDEIVSESSKEEFTAEVKAEDLQPAVDGSIE 196
Query: 644 EEEEEEEEEVRGGGKEE 660
E EEV KEE
Sbjct: 197 HSSSEVGEEVSKTEKEE 213
Score = 30.0 bits (66), Expect = 5.9
Identities = 18/56 (32%), Positives = 26/56 (46%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E + E E+EE E E+ + +++ E E EEE E E+EE EV
Sbjct: 275 EEHQGETEKEEGIPESHAEDLQPAVDDIVEHPSSEPFVAEEEVSETEKEENNPEVL 330
Score = 29.2 bits (64), Expect = 8.4
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 598 GEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E + E E+EE E E+ + ++ V+ E EEE E E+EE E
Sbjct: 275 EEHQGETEKEEGIPESHAEDLQPAVDDIVEHPSSEPFVAEEEVSETEKEENNPE 328
Score = 29.2 bits (64), Expect = 8.8
Identities = 19/57 (33%), Positives = 25/57 (43%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E E EE + E E+EE E E+ + ++ E E EEEV KEE
Sbjct: 268 EHSSSEIEEHQGETEKEEGIPESHAEDLQPAVDDIVEHPSSEPFVAEEEVSETEKEE 324
Score = 29.2 bits (64), Expect = 9.6
Identities = 26/92 (28%), Positives = 41/92 (44%), Gaps = 5/92 (5%)
Query: 573 KVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEE----EEEEEEEEEEEEEEEEEEEVQE 628
+V +T ++ E++ Q GE ++ EE E E EE + E E+EE + E
Sbjct: 316 EVSETEKEENNPEVLAEDL-QDAADGESGVSDQPAQVVEERESEIEEHQGETEKEEGIPE 374
Query: 629 EEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E++E + E E +EV KEE
Sbjct: 375 SHAEDDEIASDPSIEHFSAEVGKEVSETEKEE 406
Score = 29.2 bits (64), Expect = 9.7
Identities = 27/101 (26%), Positives = 42/101 (41%), Gaps = 1/101 (0%)
Query: 549 NSEWQSLWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEE 608
+SE + V T K + P + D + S + Q++ E E EE + E
Sbjct: 307 SSEPFVAEEEVSETEKEEN-NPEVLAEDLQDAADGESGVSDQPAQVVEERESEIEEHQGE 365
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
E+EE E E++E + E E +E E E+EE
Sbjct: 366 TEKEEGIPESHAEDDEIASDPSIEHFSAEVGKEVSETEKEE 406
>gnl|CDD|224648 COG1734, DksA, DnaK suppressor protein [Signal transduction
mechanisms].
Length = 120
Score = 28.9 bits (65), Expect = 3.8
Identities = 15/64 (23%), Positives = 32/64 (50%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
+ + E + + E +++ EE E+ EE ++E E + + +EEE E E +R +
Sbjct: 3 KEQLEHFKNKLLEWKKDLLEELEQTEEHLQDENEASPDPADRATQEEERELELRLRDRER 62
Query: 659 EEIS 662
+ +
Sbjct: 63 KLLR 66
>gnl|CDD|236876 PRK11191, PRK11191, RNase E inhibitor protein; Provisional.
Length = 138
Score = 29.2 bits (66), Expect = 3.9
Identities = 6/22 (27%), Positives = 15/22 (68%)
Query: 633 EEEEEEEEEEEEEEEEEEEEVR 654
E+ E+ ++E+ +E+++ VR
Sbjct: 116 EDPNAEDGDDEDFVDEDDDGVR 137
>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY
family of carbohydrate kinases. This subfamily is
predominantly composed of bacterial D-xylulose kinases
(XK, also known as xylulokinase; EC 2.7.1.17), which
catalyze the rate-limiting step in the ATP-dependent
phosphorylation of D-xylulose to produce D-xylulose
5-phosphate (X5P) and ADP. Some uncharacterized
sequences are also included in this subfamily. The
prototypical member of this subfamily is Escherichia
coli xylulokinase (EcXK), which exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. XKs do not have any known allosteric
regulators, and they may have weak but significant
activity in the absence of substrate. The presence of
Mg2+ or Mn2+ is required for catalytic activity. Members
of this subfamily belong to the FGGY family of
carbohydrate kinases.
Length = 482
Score = 30.4 bits (69), Expect = 4.0
Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 19/77 (24%)
Query: 493 IRPSIKKDITFMWCPSHCGIK--------GNELVDVAAKNPTTGTTPFKLC-----TPED 539
+RP+I +W + + G E+ + PT G T KL PE
Sbjct: 92 LRPAI------LWNDTRSAPEVTELKARLGAEIFSITGNIPTPGWTLPKLLWLKENEPEV 145
Query: 540 FKPFVTALMNSEWQSLW 556
F+ L+ ++ L
Sbjct: 146 FRRIARVLLPKDYIRLR 162
>gnl|CDD|223170 COG0092, RpsC, Ribosomal protein S3 [Translation, ribosomal
structure and biogenesis].
Length = 233
Score = 29.9 bits (68), Expect = 4.0
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
I +GE ++ E +E E EE EE E+ +EE EE
Sbjct: 192 IYKGEVLPDKVEIKEPAEVEEPAEESREDRRKPQEERRREEA 233
>gnl|CDD|172646 PRK14158, PRK14158, heat shock protein GrpE; Provisional.
Length = 194
Score = 29.5 bits (66), Expect = 4.0
Identities = 14/77 (18%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE---------------EEEEE 644
+ + +E E + + E + + ++E EE +E E E +
Sbjct: 16 KAKAAKEAEAAQGKPEAAQPVAAADRIKELEEALAAKEAEAAANWDKYLRERADLENYRK 75
Query: 645 EEEEEEEEVRGGGKEEI 661
++E+EE+ G E +
Sbjct: 76 RVQKEKEELLKYGNESL 92
>gnl|CDD|178945 PRK00247, PRK00247, putative inner membrane protein translocase
component YidC; Validated.
Length = 429
Score = 30.2 bits (68), Expect = 4.1
Identities = 15/64 (23%), Positives = 24/64 (37%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
R+ II R E E E ++ E+ E + ++E Q+ E E E +E
Sbjct: 312 RLRMIITPWRAPELHAENAEIKKTRTAEKNEAKARKKEIAQKRRAAEREINREARQERAA 371
Query: 647 EEEE 650
Sbjct: 372 AMAR 375
>gnl|CDD|215628 PLN03196, PLN03196, MOC1-like protein; Provisional.
Length = 487
Score = 30.1 bits (68), Expect = 4.1
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E EE E + + E E +EE++++++EV
Sbjct: 445 EGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDEVL 480
Score = 28.9 bits (65), Expect = 9.4
Identities = 10/38 (26%), Positives = 18/38 (47%)
Query: 617 EEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E EE E + E E +EE++++++E R
Sbjct: 445 EGEEMEPLFSMGGKLEMPGSESVSDEEDDDDDDEVLYR 482
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L;
Provisional.
Length = 337
Score = 30.1 bits (68), Expect = 4.1
Identities = 8/48 (16%), Positives = 20/48 (41%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
E +E+ + +E ++ + + + + + + EE G KE
Sbjct: 278 EAIDEDSDYSSDEDDDDYDSYDSSDSASSDSNSDVDTNEEDDRGEKES 325
>gnl|CDD|148491 pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This
family consists of several putative bacterial stage IV
sporulation (SpoIV) proteins. YqfD of Bacillus subtilis
is known to be essential for efficient sporulation
although its exact function is unknown.
Length = 383
Score = 30.0 bits (68), Expect = 4.1
Identities = 12/66 (18%), Positives = 34/66 (51%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEIS 662
E E +++ + +EE E+ ++ +++ E+E +++ + ++E+ E GK +
Sbjct: 314 VRETYYEVQDKVVKLTKEEAVEKGKKLAKKKLEKEIDKDAKIKDEKVLHERVENGKVRLR 373
Query: 663 LHFYVL 668
+ + V
Sbjct: 374 VLYVVE 379
>gnl|CDD|182033 PRK09697, PRK09697, protein secretion protein GspB; Provisional.
Length = 139
Score = 28.9 bits (64), Expect = 4.2
Identities = 15/48 (31%), Positives = 20/48 (41%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E EEE+E E E+EE EE +E+ E + E E
Sbjct: 91 ESVEEEDEPGVAVENAPSSSEDEENTVEESDEKAGLRERVKNALNELE 138
Score = 28.5 bits (63), Expect = 6.8
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 614 EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E EEE+E V+ E+EE EE +E+ E V+
Sbjct: 91 ESVEEEDEPGVAVENAPSSSEDEENTVEESDEKAGLRERVK 131
>gnl|CDD|219355 pfam07267, Nucleo_P87, Nucleopolyhedrovirus capsid protein P87.
This family consists of several Nucleopolyhedrovirus
capsid protein P87 sequences. P87 is expressed late in
infection and concentrated in infected cell nuclei.
Length = 606
Score = 30.2 bits (68), Expect = 4.2
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
RR E +E+E++ +E+E + E+E + EE++
Sbjct: 360 RRRVPPLPEYSSDEDEDDSDEDEVDYEKERKRRREEDK 397
>gnl|CDD|113902 pfam05149, Flagellar_rod, Paraflagellar rod protein. This family
consists of several eukaryotic paraflagellar rod
component proteins. The eukaryotic flagellum represents
one of the most complex macromolecular structures found
in any organism and contains more than 250 proteins. In
addition to its locomotive role, the flagellum is
probably involved in nutrient uptake since receptors for
host low-density lipoproteins are localised on the
flagellar membrane as well as on the flagellar pocket
membrane.
Length = 289
Score = 30.0 bits (68), Expect = 4.2
Identities = 14/47 (29%), Positives = 22/47 (46%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
E+++ +E E E + EE EEV+ E E EE+ + E
Sbjct: 59 EQQQACWRAIQELERELRDLAEERREEVERRIEAVEREEQRRTDYES 105
Score = 29.6 bits (67), Expect = 4.5
Identities = 17/59 (28%), Positives = 27/59 (45%), Gaps = 5/59 (8%)
Query: 599 EREEEEE-----EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+R E E+ E+++ +E E E ++ EE EE E E E EE+ + E
Sbjct: 46 QRRESEKFLQQNVEQQQACWRAIQELERELRDLAEERREEVERRIEAVEREEQRRTDYE 104
>gnl|CDD|219548 pfam07743, HSCB_C, HSCB C-terminal oligomerisation domain. This
domain is the HSCB C-terminal oligomerisation domain and
is found on co-chaperone proteins.
Length = 78
Score = 27.6 bits (62), Expect = 4.3
Identities = 19/53 (35%), Positives = 31/53 (58%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E E EE ++EE +E ++EV++ +E EE EE +E++ EE + VR
Sbjct: 12 ELREALEEARASDDEEALDELKKEVKQRIKELLEELEEALDEKDWEEAADLVR 64
>gnl|CDD|224427 COG1510, COG1510, Predicted transcriptional regulators
[Transcription].
Length = 177
Score = 29.3 bits (66), Expect = 4.3
Identities = 12/67 (17%), Positives = 28/67 (41%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+ + I + ++ EE E+ ++ + E +E + +++ + E+ E
Sbjct: 99 EEKWKREIDPTKEALKKLLEELNEDLDDRDLTERIKEIKSKLERLLKWSEDYYELLTRLL 158
Query: 645 EEEEEEE 651
E E EE
Sbjct: 159 EFLESEE 165
>gnl|CDD|235505 PRK05563, PRK05563, DNA polymerase III subunits gamma and tau;
Validated.
Length = 559
Score = 30.2 bits (69), Expect = 4.3
Identities = 15/35 (42%), Positives = 24/35 (68%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E+E ++++EE ++ + EEEEEEEEEE E +
Sbjct: 513 EDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAK 547
Score = 29.8 bits (68), Expect = 6.1
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
E+E ++ EE +Q+ + EEEEEEEEEE E +E
Sbjct: 513 EDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKE 548
Score = 29.5 bits (67), Expect = 6.7
Identities = 17/44 (38%), Positives = 24/44 (54%)
Query: 585 SPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
S I + + + REE ++ + EEEEEEEEEE E +E
Sbjct: 505 SVEIVAVPEDEWQKIREEFLQKHKNEEEEEEEEEELPLIPEAKE 548
>gnl|CDD|227751 COG5464, COG5464, Uncharacterized conserved protein [Function
unknown].
Length = 289
Score = 29.7 bits (67), Expect = 4.5
Identities = 16/75 (21%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
Q I E + E E+E ++E E V E + E + E
Sbjct: 216 FYQEIAE-EGPQHGEALMTIAGRLEQEGKQEGLEIVPGLLELGLRIAQIMLELGLDRELV 274
Query: 651 EEVRGGGKEEISLHF 665
V G +EE++
Sbjct: 275 LRVTGLSEEELAQIR 289
>gnl|CDD|217803 pfam03938, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 157
Score = 29.1 bits (66), Expect = 4.5
Identities = 13/91 (14%), Positives = 47/91 (51%), Gaps = 10/91 (10%)
Query: 561 NTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEE 620
+ K + ++ Q E+ + E ++EE++ +++ EE +
Sbjct: 29 ESPAGKAAQKQLEKEFKKLQAELQK----------KEKELQKEEQKLQKQAATLSEEARK 78
Query: 621 EEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
+++E+Q++++E +++++ ++E +++++E
Sbjct: 79 AKQQELQQKQQELQQKQQAAQQELQQKQQEL 109
>gnl|CDD|213395 cd12152, F1-ATPase_delta, mitochondrial ATP synthase delta subunit.
The F-ATPase is found in bacterial plasma membranes,
mitochondrial inner membranes and in chloroplast
thylakoid membranes. It has also been found in the
archaea Methanosarcina barkeri. It uses a proton
gradient to drive ATP synthesis and hydrolyzes ATP to
build the proton gradient. The extrinisic membrane
domain, F1, is composed of alpha, beta, gamma, delta,
and epsilon subunits with a stoichiometry of 3:3:1:1:1.
Alpha and beta subunit form the globular catalytic
moiety, a hexameric ring of alternating subunits. Gamma,
delta and epsilon subunits form a stalk, connecting F1
to F0, the integral membrane proton translocating
domain. In bacteria, which is lacking a eukaryotic
epsilon subunit homolog, this subunit is called the
epsilon subunit.
Length = 123
Score = 28.6 bits (65), Expect = 4.5
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E E E++ E EE E EE + ++E E+
Sbjct: 78 DEAERPEDIDVERAEEALERAEERLAQAKDEREKA 112
>gnl|CDD|219955 pfam08657, DASH_Spc34, DASH complex subunit Spc34. The DASH
complex is a ~10 subunit microtubule-binding complex
that is transferred to the kinetochore prior to mitosis.
In Saccharomyces cerevisiae DASH forms both rings and
spiral structures on microtubules in vitro. Components
of the DASH complex, including Dam1, Duo1, Spc34, Dad1
and Ask1, are essential and connect the centromere to
the plus end of spindle microtubules.
Length = 255
Score = 29.8 bits (67), Expect = 4.5
Identities = 16/62 (25%), Positives = 26/62 (41%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
I + I +R+ E + E EE+E ++ E +EEEE E E + +
Sbjct: 194 SIAELEAEIAEQKRQLEIMNISSSSPSSDTSESEEDEIDIDELIRKEEEEIRELERQLRQ 253
Query: 647 EE 648
E
Sbjct: 254 LE 255
Score = 29.0 bits (65), Expect = 7.5
Identities = 21/69 (30%), Positives = 30/69 (43%), Gaps = 3/69 (4%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE- 646
E I L R E E E E E E++ + E + E EE+E + +E
Sbjct: 178 REKIETLRDRYN-ELSESIAELEAEIAEQKRQLEIMNISSSSPSSDTSESEEDEIDIDEL 236
Query: 647 -EEEEEEVR 654
+EEEE+R
Sbjct: 237 IRKEEEEIR 245
>gnl|CDD|172647 PRK14159, PRK14159, heat shock protein GrpE; Provisional.
Length = 176
Score = 29.3 bits (65), Expect = 5.0
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 605 EEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
E+++E E E E E ++E +Q E+ E+ + +++ +E
Sbjct: 3 EQKQEFENENAENSEHLQDENLQNIEDVEQNKLQKDYDE 41
Score = 29.3 bits (65), Expect = 5.0
Identities = 11/39 (28%), Positives = 24/39 (61%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E+++E E E E E +Q+E + E+ E+ + +++ +E
Sbjct: 3 EQKQEFENENAENSEHLQDENLQNIEDVEQNKLQKDYDE 41
>gnl|CDD|150843 pfam10232, Med8, Mediator of RNA polymerase II transcription
complex subunit 8. Arc32, or Med8, is one of the
subunits of the Mediator complex of RNA polymerase II.
The region conserved contains two alpha helices
putatively necessary for binding to other subunits
within the core of the Mediator complex. The N-terminus
of Med8 binds to the essential core Head part of
Mediator and the C-terminus hinges to Med18 on the
non-essential part of the Head that also includes Med20.
Length = 226
Score = 29.5 bits (66), Expect = 5.3
Identities = 17/79 (21%), Positives = 36/79 (45%), Gaps = 13/79 (16%)
Query: 586 PRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEV----------QEEEEEEEE 635
P +E + +++ ++ E ++ ++E E + ++ +EV +EE E E
Sbjct: 101 PEVE---EWMKQARQKAENSTKDTAAKQEVEIDILQQNKEVSNWLDKVTKLREEWEFESS 157
Query: 636 EEEEEEEEEEEEEEEEEVR 654
E E+ EEE+ + V
Sbjct: 158 HRVEIEQTSEEEDTNQLVA 176
>gnl|CDD|218421 pfam05086, Dicty_REP, Dictyostelium (Slime Mold) REP protein. This
family consists of REP proteins from Dictyostelium
(Slime molds). REP protein is likely involved in
transcription regulation and control of DNA replication,
specifically amplification of plasmid at low copy
numbers. The formation of homomultimers may be required
for their regulatory activity.
Length = 910
Score = 30.2 bits (68), Expect = 5.3
Identities = 13/34 (38%), Positives = 27/34 (79%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE + QE E+++ +E+E+++E+E+E+E+E+E
Sbjct: 877 EEYLISQFQENEDDDADEDEDQDEDEDEDEDEDE 910
>gnl|CDD|216831 pfam01988, VIT1, VIT family. This family includes the vacuolar
Fe2+/Mn2+ uptake transporter, Ccc1 and the vacuolar iron
transporter VIT1.
Length = 209
Score = 29.2 bits (66), Expect = 5.4
Identities = 13/31 (41%), Positives = 18/31 (58%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQ 627
+ ER+ EE E E E+ E E + E E EE +
Sbjct: 57 KSERDLEEAELEREKRELENDPEGEREELAE 87
>gnl|CDD|227330 COG4997, COG4997, Uncharacterized conserved protein [Function
unknown].
Length = 95
Score = 27.9 bits (62), Expect = 5.5
Identities = 21/85 (24%), Positives = 36/85 (42%), Gaps = 13/85 (15%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEE-EEEEEEEEEEVQEEEEEEEEEEEEE------- 640
+ I ++I R E+EE +E E + EE EE E++ EE + E
Sbjct: 10 DLIPEIILNSGRIPVTHIAEDEEYKELLENKLLEEVEEFLEDKNLEELADLLEVISRIAE 69
Query: 641 -----EEEEEEEEEEEEVRGGGKEE 660
+E E ++++ GG E+
Sbjct: 70 ARGFSKENLEALRLQKKLEKGGFEK 94
>gnl|CDD|202045 pfam01920, Prefoldin_2, Prefoldin subunit. This family includes
prefoldin subunits that are not detected by pfam02996.
Length = 106
Score = 28.0 bits (63), Expect = 5.5
Identities = 16/38 (42%), Positives = 27/38 (71%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
EE +EE EE +E E+E + ++++ E+ E+E EE +EE
Sbjct: 61 EEVKEELEERKETLEKEIKTLEKQLEKLEKELEELKEE 98
Score = 28.0 bits (63), Expect = 6.0
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 15/79 (18%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEE---------------EEEEEEVQEEEE 631
+++ + Q I++ E + +E E EE E +E+ EE +EE++E +E
Sbjct: 13 QLQLLAQQIKQLETQLKEIELVLEELELLDEDTKVYKLIGDVLVKQDKEEVKEELEERKE 72
Query: 632 EEEEEEEEEEEEEEEEEEE 650
E+E + E++ E+ E+E
Sbjct: 73 TLEKEIKTLEKQLEKLEKE 91
Score = 27.6 bits (62), Expect = 8.1
Identities = 17/38 (44%), Positives = 27/38 (71%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
EE +EE EE +E E+E++ E++ E+ E+E EE +EE
Sbjct: 61 EEVKEELEERKETLEKEIKTLEKQLEKLEKELEELKEE 98
>gnl|CDD|222613 pfam14235, DUF4337, Domain of unknown function (DUF4337). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria. Proteins in
this family are typically between 187 and 201 amino
acids in length. There is a single completely conserved
residue Q that may be functionally important.
Length = 158
Score = 28.7 bits (65), Expect = 5.5
Identities = 10/47 (21%), Positives = 22/47 (46%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
+++L R E + + ++E+ E +E E + +E E E +
Sbjct: 60 LLELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESDH 106
Score = 28.7 bits (65), Expect = 6.5
Identities = 11/51 (21%), Positives = 21/51 (41%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E + E E E + + ++E+ E +E E + +E E E +
Sbjct: 55 ELAADLLELEAAAPRAELQAKIARYKKEKARYRSEAKELEAKAKEAEAESD 105
>gnl|CDD|237798 PRK14714, PRK14714, DNA polymerase II large subunit; Provisional.
Length = 1337
Score = 30.0 bits (68), Expect = 5.5
Identities = 13/49 (26%), Positives = 21/49 (42%)
Query: 576 KTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEE 624
T E G ++ +I G+ + EE EEEE + +E E+
Sbjct: 261 YTRKMKEEGWDWLQELIDGTIEGKSDAGEEGEEEELSTDADEYEKGPPR 309
>gnl|CDD|236382 PRK09111, PRK09111, DNA polymerase III subunits gamma and tau;
Validated.
Length = 598
Score = 29.9 bits (68), Expect = 5.5
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 16/61 (26%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQE----------------EEEEEEEEEEEEEEEEEEEEEE 650
E+E EE E E + V E EEE E E+ + ++
Sbjct: 538 EQEAAAREEREAAAEADPLVAAVLAAFPGAKIVDVRDLAPEAAEEEPAAEAEDPDALPDD 597
Query: 651 E 651
+
Sbjct: 598 D 598
>gnl|CDD|232958 TIGR00399, metG_C_term, methionyl-tRNA synthetase C-terminal
region/beta chain. The methionyl-tRNA synthetase (metG)
is a class I amino acyl-tRNA ligase. This model
describes a region of the methionyl-tRNA synthetase that
is present at the C-terminus of MetG in some species (E.
coli, B. subtilis, Thermotoga maritima, Methanobacterium
thermoautotrophicum), and as a separate beta chain in
Aquifex aeolicus. It is absent in a number of other
species (e.g. Mycoplasma genitalium, Mycobacterium
tuberculosis), while Pyrococcus horikoshii has both a
full length MetG and a second protein homologous to the
beta chain only. Proteins hit by This model should
called methionyl-tRNA synthetase beta chain if and only
if the model metG hits a separate protein not also hit
by This model [Protein synthesis, tRNA aminoacylation].
Length = 137
Score = 28.5 bits (64), Expect = 5.5
Identities = 7/31 (22%), Positives = 21/31 (67%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
+++ EE + + +++E+++E E+ E ++E
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQKET 31
Score = 28.5 bits (64), Expect = 6.0
Identities = 7/31 (22%), Positives = 20/31 (64%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+++ EE + + + +E+++E E+ E ++E
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQKET 31
Score = 28.2 bits (63), Expect = 7.7
Identities = 8/30 (26%), Positives = 20/30 (66%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
++ EE + + +++E+++E E+ E Q+E
Sbjct: 2 KKIEELKLKGAKKKEKKDEGEKALEPQKET 31
Score = 28.2 bits (63), Expect = 8.9
Identities = 7/31 (22%), Positives = 22/31 (70%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+++ EE++ + +++E+++E E+ E ++E
Sbjct: 1 DKKIEELKLKGAKKKEKKDEGEKALEPQKET 31
>gnl|CDD|221686 pfam12644, DUF3782, Protein of unknown function (DUF3782). This
family of proteins is functionally uncharacterized. This
family of proteins is found in bacteria and archaea.
Proteins in this family are typically between 91 and 186
amino acids in length.
Length = 61
Score = 27.1 bits (61), Expect = 5.5
Identities = 11/45 (24%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEE--EEEEEEEEEEEEEEEE 652
EE ++ ++E E+ EE+++E +E+++ +E + E E
Sbjct: 1 EEYKKLQKEIEKLEEKLRELLSKEQKKLLDEYIDALGARWGIENE 45
>gnl|CDD|224124 COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense
mechanisms].
Length = 733
Score = 29.7 bits (67), Expect = 5.6
Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 588 IENIIQLI----RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
I+++IQ R G++E + +EE + E+ E + + EE E +
Sbjct: 522 IDSLIQRAGRVNRHGKKENGKIYVYNDEERGPYLKYSYEKLEKKLKSLEELPLEIINGDS 581
Query: 644 EEEEEEEEEVRG 655
+E +E++
Sbjct: 582 LLSDEVDEKINQ 593
Score = 29.7 bits (67), Expect = 6.4
Identities = 23/148 (15%), Positives = 37/148 (25%), Gaps = 30/148 (20%)
Query: 555 LWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLI-------------RRGERE 601
++++ LK K+ K E I N L+ R +R
Sbjct: 545 VYNDEERGPYLKYSYE--KLEKKLKSLEELPLEIINGDSLLSDEVDEKINQDILRIQDRI 602
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEE---------------EEEEEEEEEEEEEEEEE 646
E E + + + + E EE+EE +E E E
Sbjct: 603 LSEAIELARLLDLLHKSSPDVLNSIFEYLKFLTDAEEIRDVPLEEKEELDERIESLYNLE 662
Query: 647 EEEEEEVRGGGKEEISLHFYVLYVLSKG 674
+ E L G
Sbjct: 663 ILKYLEEELSEGPTRLGEKENELKLLVG 690
>gnl|CDD|233573 TIGR01781, Trep_dent_lipo, Treponema denticola clustered
lipoprotein. This model represents a family of six
predicted lipoproteins from a region of about 20
tandemly arranged genes in the Treponema denticola
genome. Two other neighboring genes share the
lipoprotein signal peptide region but do not show more
extensive homology. The function of this locus is
unknown.
Length = 412
Score = 29.6 bits (66), Expect = 5.6
Identities = 13/57 (22%), Positives = 24/57 (42%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E++E E E+ + EE+E + E + E+ +E + V G G+
Sbjct: 24 EDKESGLREMRVEKFSKMEEKENEFLSKPEYNTHVKSPEQIKELSNKISGVSGKGES 80
>gnl|CDD|205150 pfam12925, APP_E2, E2 domain of amyloid precursor protein. The E2
domain is the largest of the conserved domains of the
amyloid precursor protein. The structure of E2 consists
of two coiled-coil sub-structures connected through a
continuous helix, and bears an unexpected resemblance to
the spectrin family of protein structures.E 2 can
reversibly dimerise in solution, and the dimerisation
occurs along the longest dimension of the molecule in an
antiparallel orientation, which enables the N-terminal
substructure of one monomer to pack against the
C-terminal substructure of a second monomer. The high
degree of conservation of residues at the putative dimer
interface suggests that the E2 dimer observed in the
crystal could be physiologically relevant. Heparin
sulfate proteoglycans, the putative ligands for the
precursor present in extracellular matrix, bind to E2 at
a conserved and positively charged site near the dimer
interface.
Length = 193
Score = 29.3 bits (66), Expect = 5.6
Identities = 13/66 (19%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
E + Q+++ E EE E + + + + + + +E + +E + E+E E ++
Sbjct: 41 ERMTQVMK--EWEEAESQYKNLPKADPKAAQLMRKELTERFQETVQTLEQEAAAERQQLV 98
Query: 649 EEEEVR 654
E + R
Sbjct: 99 ETHQQR 104
>gnl|CDD|187766 cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1.
CRISPR (Clustered Regularly Interspaced Short
Palindromic Repeats) and associated Cas proteins
comprise a system for heritable host defense by
prokaryotic cells against phage and other foreign DNA;
Cas1 is the most universal CRISPR system protein thought
to be involved in spacer integration; Cas1 is
metal-dependent deoxyribonuclease, also binds RNA; Shown
to possess a unique fold consisting of a N-terminal
beta-strand domain and a C-terminal alpha-helical
domain.
Length = 317
Score = 29.5 bits (67), Expect = 5.7
Identities = 9/38 (23%), Positives = 20/38 (52%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEE 624
+I N ++++R R+ +E E EE E+ ++ +
Sbjct: 111 KIRNQRRVLKRYARDGKELLLALAELEELLEKLDKAKS 148
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
Provisional.
Length = 693
Score = 29.6 bits (68), Expect = 5.9
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 24/92 (26%)
Query: 588 IENIIQLIRR-GEREEEEEEEEEEEEEEEEEEEEEEE-----------------EEVQEE 629
I+ +L G + E + E +EE + +E E + + ++EE
Sbjct: 216 IDAQEELAAEAGPKWEWQPPEVDEELKAAVKELAEAKLKEAYQITDKQEREAALDAIKEE 275
Query: 630 EEEEEEEEEEEEEEEEE------EEEEEEVRG 655
E EEEEEE+E+E + E++ VR
Sbjct: 276 VLEALAAEEEEEEDEKEIKEAFKKLEKKIVRR 307
>gnl|CDD|223610 COG0536, Obg, Predicted GTPase [General function prediction only].
Length = 369
Score = 29.4 bits (67), Expect = 5.9
Identities = 13/37 (35%), Positives = 20/37 (54%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEE 642
EE + E E E EE E EV ++E E+ E +++
Sbjct: 333 EETKAEAEAAEAEELPVEVEVLYDDEHEDFEIVRDDD 369
Score = 29.1 bits (66), Expect = 9.3
Identities = 12/45 (26%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
Query: 588 IENIIQLI--RRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEE 630
+ + +L+ + E E E EE E E ++E E+ E V++++
Sbjct: 325 LRALAELLEETKAEAEAAEAEELPVEVEVLYDDEHEDFEIVRDDD 369
>gnl|CDD|227225 COG4888, COG4888, Uncharacterized Zn ribbon-containing protein
[General function prediction only].
Length = 104
Score = 27.9 bits (62), Expect = 6.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 596 RRGEREEEEEEEEEEEEEEEEEE 618
RG E +EE ++E E EE
Sbjct: 80 GRGCGESGTDEENDQEIESPGEE 102
>gnl|CDD|221753 pfam12753, Nro1, Nuclear pore complex subunit Nro1. In fission
yeast, this protein is a positive regulator of the
stability of Sre1N, the sterol regulatory
element-binding protein which is an ER membrane-bound
transcription factor that controls adaptation to low
oxygen-growth. In addition, the fission yeast Nro1 is a
direct inhibitor of a protein that inhibits SreN1
degradation, Ofd1 (an oxoglutamate deoxygenase). The
outcome of this reactivity is that Ofd1 acts as an
oxygen sensor that regulates the binding of Nro1 to Ofd1
to control the stability of Sre1N. Solution of the
structure of Nro1 reveals it to be made up of a number
of TPR coils.
Length = 401
Score = 29.5 bits (66), Expect = 6.0
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
E +E E +E + +EEEEEEEV+ +E+
Sbjct: 216 ENFGKENEIDEGLDSDEEEEEEEVELDEK 244
>gnl|CDD|129911 TIGR00831, a_cpa1, Na+/H+ antiporter, bacterial form. The
Monovalent Cation:Proton Antiporter-1 (CPA1) Family (TC
2.A.36) The CPA1 family is a large family of proteins
derived from Gram-positive and Gram-negative bacteria,
blue green bacteria, yeast, plants and animals.
Transporters from eukaryotes have been functionally
characterized, and all of these catalyze Na+:H+
exchange. Their primary physiological functions may be
in (1) cytoplasmic pH regulation, extruding the H+
generated during metabolism, and (2) salt tolerance (in
plants), due to Na+ uptake into vacuoles. This model is
specific for the bacterial members of this family
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 525
Score = 29.9 bits (67), Expect = 6.0
Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 8/92 (8%)
Query: 594 LIRRGEREEEEEEEEEE--------EEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEE 645
++R E E E EE + + E+ + E E E + EE
Sbjct: 403 FVKRKFVSEHSERELEEIIARYIAARSAKFALMKAVEQLRIVEPVARELLPELDARIEEL 462
Query: 646 EEEEEEEVRGGGKEEISLHFYVLYVLSKGKIA 677
+ EE++R G E+ LYVL + A
Sbjct: 463 RADGEEKIRSGMGEKNLRRRARLYVLDAKRSA 494
>gnl|CDD|184859 PRK14857, tatA, twin arginine translocase protein A; Provisional.
Length = 90
Score = 27.8 bits (62), Expect = 6.1
Identities = 14/44 (31%), Positives = 21/44 (47%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE 643
+E E E + E E E+E + E E Q E +E+ + E E
Sbjct: 46 KEFENEIKREMAEPEQEVKAPAELESNQTNEANQEQVDAENSPE 89
Score = 27.4 bits (61), Expect = 7.1
Identities = 12/43 (27%), Positives = 21/43 (48%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
E E E + E E E+E + E++ + E +E+ + E E
Sbjct: 47 EFENEIKREMAEPEQEVKAPAELESNQTNEANQEQVDAENSPE 89
Score = 27.4 bits (61), Expect = 8.6
Identities = 14/43 (32%), Positives = 21/43 (48%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
E E E + E E E+EV+ E E + E +E+ + E E
Sbjct: 47 EFENEIKREMAEPEQEVKAPAELESNQTNEANQEQVDAENSPE 89
>gnl|CDD|215406 PLN02761, PLN02761, lipase class 3 family protein.
Length = 527
Score = 29.6 bits (66), Expect = 6.2
Identities = 14/40 (35%), Positives = 24/40 (60%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRG 655
++++ ++ V + + EEE EEE EE+E E EV+G
Sbjct: 57 QQKQSNKQTHVSDNKREEEPEEELEEKEVSLREIWREVQG 96
>gnl|CDD|165339 PHA03046, PHA03046, Hypothetical protein; Provisional.
Length = 142
Score = 28.6 bits (64), Expect = 6.2
Identities = 13/46 (28%), Positives = 25/46 (54%)
Query: 616 EEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEI 661
+++EE + E +E+ EE+ ++ + EEEE +R K+ I
Sbjct: 11 DDDEENDRNEHREKTSEEDGHYKKRLDVEEEEPNLINIRNEIKKII 56
Score = 28.2 bits (63), Expect = 8.2
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEE 644
+++EE + E E EE+ ++ + EEEE
Sbjct: 11 DDDEENDRNEHREKTSEEDGHYKKRLDVEEEE 42
>gnl|CDD|220714 pfam10357, Kin17_mid, Domain of Kin17 curved DNA-binding protein.
Kin17_mid is the conserved central 169 residue region of
a family of Kin17 proteins. Towards the N-terminal end
there is a zinc-finger domain, and in human and mouse
members there is a RecA-like domain further downstream.
The Kin17 protein in humans forms intra-nuclear foci
during cell proliferation and is re-distributed in the
nucleoplasm during the cell cycle.
Length = 127
Score = 28.4 bits (64), Expect = 6.2
Identities = 13/40 (32%), Positives = 26/40 (65%), Gaps = 4/40 (10%)
Query: 592 IQLIRRG----EREEEEEEEEEEEEEEEEEEEEEEEEEVQ 627
I I R +R+EE ++E++E+ +EE E++ EE+++
Sbjct: 88 ITYIDRSPEALKRQEELRKKEKQEKTDEEREQKLLEEQIK 127
>gnl|CDD|213756 TIGR02985, Sig70_bacteroi1, RNA polymerase sigma-70 factor,
Bacteroides expansion family 1. This group of sigma
factors are members of the sigma-70 family (TIGR02937)
and are found primarily in the genus Bacteroides. This
family appears to have resulted from a lineage-specific
expansion as B. thetaiotaomicron VPI-5482, Bacteroides
forsythus ATCC 43037, Bacteroides fragilis YCH46 and
Bacteroides fragilis NCTC 9343 contain 25, 12, 24 and 23
members, respectively. There are currentlyonly two known
members of this family outside of the Bacteroides, in
Rhodopseudomonas and Bradyrhizobium.
Length = 161
Score = 28.7 bits (65), Expect = 6.3
Identities = 16/33 (48%), Positives = 21/33 (63%)
Query: 619 EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
EE+ +EE+ E EE E E + EEE E +E EE
Sbjct: 74 EEKYQEELAEIEERELSEADPEEELEAKELEEI 106
Score = 28.3 bits (64), Expect = 9.3
Identities = 18/46 (39%), Positives = 25/46 (54%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEE 636
+ +R + EE+ +EE E EE E E + EEE +E EE EE
Sbjct: 64 CLNYLRHKQVEEKYQEELAEIEERELSEADPEEELEAKELEEIIEE 109
>gnl|CDD|212139 cd11532, NTP-PPase_COG4997, Nucleoside Triphosphate
Pyrophosphohydrolase (EC 3.6.1.8) MazG-like domain found
in a group of uncharacterized proteins from archaea and
bacteria. The family includes some uncharacterized
hypothetical proteins from archaea and bacteria.
Although their biological roles remain unclear, the
family members show significant sequence similarity to
the dimeric 2-deoxyuridine 5'-triphosphate
nucleotidohydrolase (dUTP pyrophosphatase or dUTPase)
and NTP-PPase MazG proteins. However, unlike typical
tandem-domain MazG proteins, the family contains a
single MazG-like domain.
Length = 95
Score = 27.5 bits (62), Expect = 6.3
Identities = 22/84 (26%), Positives = 34/84 (40%), Gaps = 17/84 (20%)
Query: 590 NIIQLIR-RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE----------- 637
I ++IR G+ +EE E +++ EE E E + E+ EE
Sbjct: 8 RIPEIIRASGKTCVTRILSDEEYLEALKKKLVEEAAEYAEAKTEDSLEELADLLEVIYAI 67
Query: 638 -----EEEEEEEEEEEEEEEVRGG 656
EE E+ E++ E RGG
Sbjct: 68 AEAHGISLEELEKVREKKREERGG 91
>gnl|CDD|237185 PRK12739, PRK12739, elongation factor G; Reviewed.
Length = 691
Score = 29.8 bits (68), Expect = 6.3
Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 5/81 (6%)
Query: 591 IIQLIR-RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEE---EEE 646
+I LI+ + ++E + EEE+ + +E+ EE +E+ E E +EE E E E
Sbjct: 173 VIDLIKMKAIIWDDETLGAKYEEEDIPADLKEKAEEYREKLIEAVAEVDEELMEKYLEGE 232
Query: 647 EEEEEEVRGG-GKEEISLHFY 666
E EEE++ K I++ F+
Sbjct: 233 EITEEEIKAAIRKATINMEFF 253
>gnl|CDD|184287 PRK13735, PRK13735, conjugal transfer mating pair stabilization
protein TraG; Provisional.
Length = 942
Score = 29.7 bits (67), Expect = 6.4
Identities = 12/73 (16%), Positives = 26/73 (35%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
I N ++ E E + + EE + + + + + E + + EE+
Sbjct: 855 IRNDVKHQVDNMVTEYEGNIGDTQNSIRGEENTVKGQYSELQNHHKTEALSQNNKYNEEK 914
Query: 648 EEEEEVRGGGKEE 660
+E + G E
Sbjct: 915 SAQERMPGADSPE 927
>gnl|CDD|224636 COG1722, XseB, Exonuclease VII small subunit [DNA replication,
recombination, and repair].
Length = 81
Score = 27.3 bits (61), Expect = 6.4
Identities = 23/64 (35%), Positives = 38/64 (59%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEE 646
+E I++ + GE EE +E E +E +E+ ++ ++ E+ EE+EEE+ EE E
Sbjct: 18 ELEEIVESLESGELPLEEALKEFERGMALYKECQEKLQQAEQRVEKLLEEDEEEDPEEGE 77
Query: 647 EEEE 650
EEEE
Sbjct: 78 EEEE 81
>gnl|CDD|224317 COG1399, COG1399, Predicted metal-binding, possibly nucleic
acid-binding protein [General function prediction only].
Length = 176
Score = 28.9 bits (65), Expect = 6.6
Identities = 12/42 (28%), Positives = 18/42 (42%)
Query: 622 EEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
E E + E +E+ +EE E++EV EI L
Sbjct: 77 EPVEYPLDVTVTELFVRPDEQADEEPLEDDEVEVIEDGEIDL 118
Score = 28.5 bits (64), Expect = 8.3
Identities = 19/81 (23%), Positives = 29/81 (35%), Gaps = 26/81 (32%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE-------EEE-----------EEEEEE 640
E +E+ +EE E++E EV E+ E E+E E E
Sbjct: 83 LDVTVTELFVRPDEQADEEPLEDDEVEVIEDGEIDLLESVEDEILLALPLVPLCEPECCG 142
Query: 641 --------EEEEEEEEEEEEV 653
EE E++E+V
Sbjct: 143 LCPPCGVWGVLPEEGEKKEKV 163
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 29.5 bits (67), Expect = 6.7
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEE 639
+ +E+E E + + + + EE EE +Q E+EE EEE +
Sbjct: 175 DLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERK 215
>gnl|CDD|227925 COG5638, COG5638, Uncharacterized conserved protein [Function
unknown].
Length = 622
Score = 29.8 bits (66), Expect = 6.7
Identities = 19/107 (17%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
Query: 548 MNSEWQSLWDNVPNTNKLKTIRPSIKVWKTSDQDEIGSPRIENIIQLIRRGEREEEEEEE 607
+NSE + D+ N T + S+ D+ ++E I+ + R RE +E +
Sbjct: 394 LNSELVDMSDDGENGEMEDTFTSHLPASNESESDD----KLETTIEKLDRKLRERQENRK 449
Query: 608 EEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
E + ++ +++ + + +++ + ++ ++ + E +EE E ++
Sbjct: 450 ERQLKKTKDDSDVDLKDKKESINKKNKKGKHAIERTAASKEELELIK 496
Score = 29.0 bits (64), Expect = 9.9
Identities = 30/121 (24%), Positives = 47/121 (38%), Gaps = 20/121 (16%)
Query: 560 PNTNKLKTIRPSIKV---WKTSDQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEE 616
P ++LK +KV +K D+D + ++ + + + + +E + E E E E
Sbjct: 22 PRFSRLKRGNFKVKVDERFKKEDKDFKTTASVDRYGRPLNQDKATKEIDRLYELENESSE 81
Query: 617 EEEEEEEEEVQEEEEE-----------------EEEEEEEEEEEEEEEEEEEEVRGGGKE 659
E + EEV E E +E EE EEE+ E E G E
Sbjct: 82 SSEITDNEEVASASSELTDEYDPARGEGIISTSESSDESREESEEEKANEISEKAGAVPE 141
Query: 660 E 660
E
Sbjct: 142 E 142
>gnl|CDD|130217 TIGR01147, V_ATP_synt_G, vacuolar ATP synthase, subunit G. This
model describes the vacuolar ATP synthase G subunit in
eukaryotes and includes members from diverse groups
e.g., fungi, plants, parasites etc. V-ATPases are
multi-subunit enzymes composed of two functional
domains: A transmembrane Vo domain and a peripheral
catalytic domain V1. The G subunit is one of the
subunits of the catalytic domain. V-ATPases are
responsible for the acidification of endosomes and
lysosomes, which are part of the central vacuolar system
[Energy metabolism, ATP-proton motive force
interconversion].
Length = 113
Score = 27.9 bits (62), Expect = 6.8
Identities = 16/75 (21%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 592 IQLIRRGEREEEEEEEEEEEEE----EEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
IQ + + E+ E+ E + + ++ +EE ++E E +++ E+E +E E +
Sbjct: 8 IQQLLQAEKRAAEKVSEARKRKTKRLKQAKEEAQKEVEKYKQQREKEFKEFEAKHLGGNG 67
Query: 648 EEEEEVRGGGKEEIS 662
EE+ + +I
Sbjct: 68 AAEEKAEAETQAKIR 82
>gnl|CDD|226673 COG4220, COG4220, Phage DNA packaging protein, Nu1 subunit of
terminase [DNA replication, recombination, and repair].
Length = 174
Score = 28.6 bits (64), Expect = 6.8
Identities = 9/50 (18%), Positives = 16/50 (32%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
I E + ++ EE E E Q + +E + + E
Sbjct: 51 ISWYAERAAEVAAGDLRDDVEELREARERHRLTRAQADAQELKNARDSGE 100
>gnl|CDD|217417 pfam03194, LUC7, LUC7 N_terminus. This family contains the N
terminal region of several LUC7 protein homologues and
only contains eukaryotic proteins. LUC7 has been shown
to be a U1 snRNA associated protein with a role in
splice site recognition. The family also contains human
and mouse LUC7 like (LUC7L) proteins and human cisplatin
resistance-associated overexpressed protein (CROP).
Length = 252
Score = 29.3 bits (66), Expect = 6.9
Identities = 17/60 (28%), Positives = 30/60 (50%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
+R E +EE+ + + + EE E +EE E E EE + +E + +E EE++
Sbjct: 103 KQRLELTQEEQTKIAADSKAEELAELDEEIGKLLAEAEALGEEGKVDEAMKLMKEVEELK 162
>gnl|CDD|239285 cd02987, Phd_like_Phd, Phosducin (Phd)-like family, Phd subfamily;
Phd is a cytosolic regulator of G protein functions. It
specifically binds G protein betagamma (Gbg)-subunits
with high affinity, resulting in the solubilization of
Gbg from the plasma membrane. This impedes the formation
of a functional G protein trimer (G protein
alphabetagamma), thereby inhibiting G protein-mediated
signal transduction. Phd also inhibits the GTPase
activity of G protein alpha. Phd can be phosphorylated
by protein kinase A and G protein-coupled receptor
kinase 2, leading to its inactivation. Phd was
originally isolated from the retina, where it is highly
expressed and has been implicated to play an important
role in light adaptation. It is also found in the pineal
gland, liver, spleen, striated muscle and the brain. The
C-terminal domain of Phd adopts a thioredoxin fold, but
it does not contain a CXXC motif. Phd interacts with G
protein beta mostly through the N-terminal helical
domain.
Length = 175
Score = 28.8 bits (65), Expect = 6.9
Identities = 9/38 (23%), Positives = 27/38 (71%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE 637
R+ ++ +E E+E+++++E++EE ++ +E+ +E +
Sbjct: 17 RKFKQLKESEQEDDDDDEDKEEFLQQYREQRMQEMHAK 54
>gnl|CDD|237697 PRK14379, PRK14379, hypothetical protein; Provisional.
Length = 95
Score = 27.5 bits (61), Expect = 7.0
Identities = 23/88 (26%), Positives = 39/88 (44%), Gaps = 4/88 (4%)
Query: 153 LLRFYKSFTLPILDYGCFIYGSAKDHVLNKLNTVHHAGIRIATG---ALRSSPVVSLYVD 209
L+R Y+ F PIL C Y + ++++ L H + + G LR +P + VD
Sbjct: 8 LVRVYQKFISPILPPSCRYYPTCSSYMIDALKK-HGPILGLIMGLARILRCNPFIRGGVD 66
Query: 210 SGIPPLSLRRSKLMLNYVSKVGASPFNP 237
+LRR+ Y ++ A F+
Sbjct: 67 PVPDYFTLRRNPHPERYEDEIIAQKFHS 94
>gnl|CDD|153284 cd07600, BAR_Gvp36, The Bin/Amphiphysin/Rvs (BAR) domain of
Saccharomyces cerevisiae Golgi vesicle protein of 36 kDa
and similar proteins. BAR domains are dimerization,
lipid binding and curvature sensing modules found in
many different proteins with diverse functions including
organelle biogenesis, membrane trafficking or
remodeling, and cell division and migration. Proteomic
analysis shows that Golgi vesicle protein of 36 kDa
(Gvp36) may be involved in vesicular trafficking and
nutritional adaptation. A Saccharomyces cerevisiae
strain deficient in Gvp36 shows defects in growth, in
actin cytoskeleton polarization, in endocytosis, in
vacuolar biogenesis, and in the cell cycle. BAR domains
form dimers that bind to membranes, induce membrane
bending and curvature, and may also be involved in
protein-protein interactions.
Length = 242
Score = 28.9 bits (65), Expect = 7.1
Identities = 15/48 (31%), Positives = 22/48 (45%)
Query: 606 EEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
E E++E E E E+E V EE E +E + E + +E V
Sbjct: 174 EPAEKQEAARVEVETAEDEFVSATEEAVELMKEVLDNPEPLQLLKELV 221
Score = 28.9 bits (65), Expect = 9.2
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
R E + E E++E E E E+E EE E +E + E + +E
Sbjct: 167 RAELKSAEPAEKQEAARVEVETAEDEFVSATEEAVELMKEVLDNPEPLQLLKE 219
>gnl|CDD|218446 pfam05120, GvpG, Gas vesicle protein G. These proteins are
involved in the formation of gas vesicles.
Length = 80
Score = 27.4 bits (61), Expect = 7.2
Identities = 15/50 (30%), Positives = 25/50 (50%)
Query: 589 ENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
EN+ + + +R+ + E EEE + EEE + E ++ E E E E
Sbjct: 31 ENLRKELAELQRQLDMGEISEEEFDRREEELLDRLEALKRAEAESEGEAT 80
>gnl|CDD|218191 pfam04652, DUF605, Vta1 like. Vta1 (VPS20-associated protein 1) is
a positive regulator of Vps4. Vps4 is an ATPase that is
required in the multivesicular body (MVB) sorting
pathway to dissociate the endosomal sorting complex
required for transport (ESCRT). Vta1 promotes correct
assembly of Vps4 and stimulates its ATPase activity
through its conserved Vta1/SBP1/LIP5 region.
Length = 315
Score = 29.3 bits (66), Expect = 7.3
Identities = 7/53 (13%), Positives = 17/53 (32%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
I + +E E+ +EE+E+ + E+ + +
Sbjct: 138 IHKALKEGEDPNPGPPLDEEDEDADVATTNSDNSFPGEDADPASASPSDPPSS 190
>gnl|CDD|220777 pfam10486, PI3K_1B_p101, Phosphoinositide 3-kinase gamma adapter
protein p101 subunit. Class I PI3Ks are dual-specific
lipid and protein kinases involved in numerous
intracellular signaling pathways. Class IB PI3K,
p110gamma, is mainly activated by seven-transmembrane
G-protein-coupled receptors (GPCRs), through its
regulatory subunit p101 and G-protein beta-gamma
subunits.
Length = 856
Score = 29.6 bits (66), Expect = 7.4
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 590 NIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEE 631
+I+ LI E + E E+EE EEEEEE++E + + E +
Sbjct: 295 DILNLILLKESQLLEPVLSEDEEVEEEEEEDDETDGLSPERD 336
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional.
Length = 613
Score = 29.3 bits (67), Expect = 7.4
Identities = 13/28 (46%), Positives = 21/28 (75%)
Query: 595 IRRGEREEEEEEEEEEEEEEEEEEEEEE 622
+ RG+ + +E+EEE+EE+EE EEE +
Sbjct: 469 VARGDLDLGKEDEEEKEEKEEAEEEFKP 496
Score = 29.3 bits (67), Expect = 8.8
Identities = 13/30 (43%), Positives = 21/30 (70%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
R + + +E+EEE+EE+EE EEE + + E
Sbjct: 470 ARGDLDLGKEDEEEKEEKEEAEEEFKPLLE 499
>gnl|CDD|185638 PTZ00459, PTZ00459, mucin-associated surface protein (MASP);
Provisional.
Length = 291
Score = 29.0 bits (64), Expect = 7.5
Identities = 15/41 (36%), Positives = 28/41 (68%), Gaps = 5/41 (12%)
Query: 620 EEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE++E+V +++ EE ++++ E+EEEE+VRG +E
Sbjct: 75 EEDDEDV-----DDDSEEGDDDDGGAEDEEEEKVRGQSGQE 110
>gnl|CDD|224162 COG1241, MCM2, Predicted ATPase involved in replication control,
Cdc46/Mcm family [DNA replication, recombination, and
repair].
Length = 682
Score = 29.6 bits (67), Expect = 7.6
Identities = 16/65 (24%), Positives = 27/65 (41%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
E G + + +E E E+ EE EE E E+EV+E E+ +++ + E
Sbjct: 614 EPGKSKSKRDKIEKVLDIIKELVERSEDPVEEIIEEAEGISEKEVEEALEKLKKKGDILE 673
Query: 642 EEEEE 646
Sbjct: 674 PNPGY 678
>gnl|CDD|224731 COG1818, COG1818, Predicted RNA-binding protein, contains THUMP
domain [General function prediction only].
Length = 175
Score = 28.5 bits (64), Expect = 7.6
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 594 LIRRGEREEEEEEEEEEEEEEEEE------EEEEEEEEVQEEEEEEEEEEEEEEE 642
LI E +EEE E+ +E E E E E + +E++E E EE+ +E +
Sbjct: 40 LIVESELDEEEALEKLKEVPEVERVIPVEIEVETDLDEIEEAAAELAEEKIKEGK 94
>gnl|CDD|219791 pfam08317, Spc7, Spc7 kinetochore protein. This domain is found in
cell division proteins which are required for
kinetochore-spindle association.
Length = 321
Score = 29.2 bits (66), Expect = 7.7
Identities = 30/109 (27%), Positives = 54/109 (49%), Gaps = 7/109 (6%)
Query: 563 NKLKTIRPSIKVWKTSDQDEIGSPR-IENIIQLIRRGEREE--EEEEEEEEEEEEEEEEE 619
N + +I+P ++ + ++EI S R + + + L E E+ +E + E+ ++
Sbjct: 171 NLINSIKPKLRKKLQALKEEIASLRQLADELNLCDPLELEKARQELRSLSVKISEKRKQL 230
Query: 620 EEEEEEVQEE----EEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISLH 664
EE ++E+QE E ++ E EE E E+ EE RG +EIS
Sbjct: 231 EELQQELQELTIAIEALTNKKSELLEEIAEAEKIREECRGWSAKEISKL 279
>gnl|CDD|116948 pfam08367, M16C_assoc, Peptidase M16C associated. This domain
appears in eukaryotes as well as bacteria and tends to
be found near the C-terminus of the metalloprotease M16C
(pfam05193).
Length = 248
Score = 28.7 bits (65), Expect = 7.8
Identities = 16/46 (34%), Positives = 25/46 (54%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
+E EE+ EEE E+ E++ EE++E+ E E EE + E
Sbjct: 4 DETLEEKLNEEEREKLEKKKSSLSEEDKEKIIERGLELEELQSTPE 49
>gnl|CDD|132725 cd06528, RNAP_A'', A'' subunit of Archaeal RNA Polymerase (RNAP).
Archaeal RNA polymerase (RNAP), like bacterial RNAP, is
a large multi-subunit complex responsible for the
synthesis of all RNAs in the cell. The relative
positioning of the RNAP core is highly conserved between
archaeal RNAP and the three classes of eukaryotic RNAPs.
In archaea, the largest subunit is split into two
polypeptides, A' and A'', which are encoded by separate
genes in an operon. Sequence alignments reveal that the
archaeal A'' subunit corresponds to the C-terminal
one-third of the RNAPII largest subunit (Rpb1). In
subunit A'', several loops in the jaw domain are
shorter. The RNAPII Rpb1 interacts with the
second-largest subunit (Rpb2) to form the DNA entry and
RNA exit channels in addition to the catalytic center of
RNA synthesis.
Length = 363
Score = 29.1 bits (66), Expect = 7.8
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEE 633
+E+ EE +E E EE+ +E E
Sbjct: 1 PLLKEKLEEVLKEHGLTLSEAEEIIKEVLRE 31
>gnl|CDD|148614 pfam07106, TBPIP, Tat binding protein 1(TBP-1)-interacting protein
(TBPIP). This family consists of several eukaryotic
TBP-1 interacting protein (TBPIP) sequences. TBP-1 has
been demonstrated to interact with the human
immunodeficiency virus type 1 (HIV-1) viral protein Tat,
then modulate the essential replication process of HIV.
In addition, TBP-1 has been shown to be a component of
the 26S proteasome, a basic multiprotein complex that
degrades ubiquitinated proteins in an ATP-dependent
fashion. Human TBPIP interacts with human TBP-1 then
modulates the inhibitory action of human TBP-1 on
HIV-Tat-mediated transactivation.
Length = 169
Score = 28.4 bits (64), Expect = 7.8
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 4/76 (5%)
Query: 579 DQDEIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEE 638
+QD+ P E + +L + E EE EE + +++ E E + + + EE +EE
Sbjct: 62 NQDQFELPSDEELNKL----DMEIEELREEVQLLKQDCSTLEIELKSLTSDLTTEELQEE 117
Query: 639 EEEEEEEEEEEEEEVR 654
+E ++E E EE++
Sbjct: 118 IQELKKEVREIEEKLE 133
>gnl|CDD|205039 pfam12718, Tropomyosin_1, Tropomyosin like. This family is a set
of eukaryotic tropomyosins. Within the yeast Tmp1 and
Tmp2, biochemical and sequence analyses indicate that
Tpm2p spans four actin monomers along a filament,
whereas Tpmlp spans five. Despite its shorter length,
Tpm2p can compete with Tpm1p for binding to F-actin.
Over-expression of Tpm2p in vivo alters the axial
budding of haploids to a bipolar pattern, and this can
be partially suppressed by co-over-expression of Tpm1p.
This suggests distinct functions for the two
tropomyosins, and indicates that the ratio between them
is important for correct morphogenesis. The family also
contains higher eukaryote Tmp3 members.
Length = 143
Score = 28.3 bits (64), Expect = 7.9
Identities = 21/57 (36%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 604 EEEEEEEEEEEEEEEEEEEEEEVQEEEEE------EEEEEEEEEEEEEEEEEEEEVR 654
EEE EE E+ +E E+ E + + EE E E E +E EE+ EE E++ +E +
Sbjct: 86 EEELEESEKRLKETTEKLREADKKAEESERKVKALENERDEWEEKYEELEKKYKEAK 142
Score = 28.3 bits (64), Expect = 8.2
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 10/62 (16%)
Query: 599 EREEEEEEEEEEEEE--EEEEEEEEEEEEVQE--------EEEEEEEEEEEEEEEEEEEE 648
E E +E EE EE+ E E+E E+E+E+ EEE E+ EE+ +E +E+ EE
Sbjct: 8 EAENAQERAEELEEKLKELEQENLEKEQEITSLQKKNQQLEEEVEKLEEQLKEAKEKLEE 67
Query: 649 EE 650
E
Sbjct: 68 SE 69
>gnl|CDD|218358 pfam04979, IPP-2, Protein phosphatase inhibitor 2 (IPP-2). Protein
phosphotase inhibitor 2 (IPP-2) is a phosphoprotein
conserved among all eukaryotes, and it appears in both
the nucleus and cytoplasm of tissue culture cells.
Length = 123
Score = 27.8 bits (62), Expect = 7.9
Identities = 18/60 (30%), Positives = 26/60 (43%), Gaps = 4/60 (6%)
Query: 599 EREEEEEEEEEEEEEE----EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
R ++E+ + E E E E E+ E + EE E E+EE EE+E R
Sbjct: 35 HRMDDEDSDSESEGNESLTPESLAEKLAAAESSDPSFSIEESESSSSEDEEFSPEEKEKR 94
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase.
Length = 702
Score = 29.2 bits (65), Expect = 8.0
Identities = 9/25 (36%), Positives = 18/25 (72%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEE 639
EE++EEE + +V+EE++ + E+
Sbjct: 13 EEDDEEEMDMDVKEEDDGDRRNREK 37
>gnl|CDD|221342 pfam11960, DUF3474, Domain of unknown function (DUF3474). This
presumed domain is functionally uncharacterized. This
domain is found in bacteria and eukaryotes. This domain
is typically between 126 to 140 amino acids in length.
This domain is found associated with pfam00487.
Length = 135
Score = 28.1 bits (63), Expect = 8.0
Identities = 14/20 (70%), Positives = 15/20 (75%)
Query: 626 VQEEEEEEEEEEEEEEEEEE 645
VQ EEEEEE +EEEEEE
Sbjct: 70 VQSVEEEEEENGNDEEEEEE 89
>gnl|CDD|218769 pfam05833, FbpA, Fibronectin-binding protein A N-terminus (FbpA).
This family consists of the N-terminal region of the
prokaryotic fibronectin-binding protein. Fibronectin
binding is considered to be an important virulence
factor in streptococcal infections. Fibronectin is a
dimeric glycoprotein that is present in a soluble form
in plasma and extracellular fluids; it is also present
in a fibrillar form on cell surfaces. Both the soluble
and cellular forms of fibronectin may be incorporated
into the extracellular tissue matrix. While fibronectin
has critical roles in eukaryotic cellular processes,
such as adhesion, migration and differentiation, it is
also a substrate for the attachment of bacteria. The
binding of pathogenic Streptococcus pyogenes and
Staphylococcus aureus to epithelial cells via
fibronectin facilitates their internalisation and
systemic spread within the host.
Length = 447
Score = 29.1 bits (66), Expect = 8.1
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 610 EEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
EE+ EE +EE E E V+ + E E E+ EE EE E+
Sbjct: 392 EEQIEETKEEIEYLESVEAQLENAESLEDLEEIREELIEQ 431
Score = 29.1 bits (66), Expect = 9.0
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 613 EEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEE 652
EE+ EE +EE E ++ E + E E E+ EE EE E+
Sbjct: 392 EEQIEETKEEIEYLESVEAQLENAESLEDLEEIREELIEQ 431
>gnl|CDD|235239 PRK04172, pheS, phenylalanyl-tRNA synthetase subunit alpha;
Provisional.
Length = 489
Score = 29.0 bits (66), Expect = 8.3
Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 20/79 (25%)
Query: 595 IRRGEREEEEEEEEEEEE-------EEEEEEEEEEEEEVQEE-------EEEEEEE---- 636
I +G+ + + E+ EE E ++EE EE+ +V +E EE+E E
Sbjct: 119 IEKGKVILKPDAYEDPEEKALKALAEGDKEELSEEDLKVLKELKKRKLVEEKERTERSVE 178
Query: 637 --EEEEEEEEEEEEEEEEV 653
+ E +E E +EE+
Sbjct: 179 LTDAGLELLKEGIELKEEI 197
>gnl|CDD|221466 pfam12220, U1snRNP70_N, U1 small nuclear ribonucleoprotein of 70kDa
MW N terminal. This domain is found in eukaryotes. This
domain is about 90 amino acids in length. This domain is
found associated with pfam00076. This domain is part of
U1 snRNP, which is the pre-mRNA binding protein of the
penta-snRNP spliceosome complex. It extends over a
distance of 180 A from its RNA binding domain, wraps
around the core domain of U1 snRNP consisting of the
seven Sm proteins and finally contacts U1-C, which is
crucial for 5'-splice-site recognition.
Length = 94
Score = 27.2 bits (61), Expect = 8.4
Identities = 13/40 (32%), Positives = 25/40 (62%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEE 648
++ ++E E E E +E E+ E++E+ E++ EEE +E
Sbjct: 48 KDYKDEPPPEPTETWLEKREREKREKKEKLEKKLEEELKE 87
>gnl|CDD|185594 PTZ00395, PTZ00395, Sec24-related protein; Provisional.
Length = 1560
Score = 29.3 bits (65), Expect = 8.5
Identities = 12/33 (36%), Positives = 18/33 (54%)
Query: 600 REEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEE 632
R++ E+ +EE E E E E EV ++ EE
Sbjct: 559 RQKYEQSDEESVESSSSENSSENENEVTDKGEE 591
Score = 29.3 bits (65), Expect = 9.3
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 603 EEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+ E+ E ++ E+ +EE V+ E E E E ++ EE
Sbjct: 547 AKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEE 591
Score = 29.3 bits (65), Expect = 9.5
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 615 EEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
+ E+ E +++ E+ +EE E E E E EV G+E SL
Sbjct: 547 AKREDHPEGGTNRQKYEQSDEESVESSSSENSSENENEVTDKGEEIYSL 595
>gnl|CDD|220716 pfam10359, Fmp27_WPPW, RNA pol II promoter Fmp27 protein domain.
Fmp27_WPPW is a conserved domain of a family of proteins
involved in RNA polymerase II transcription initiation.
It contains characteristic HQR and WPPW sequence motifs.
and is towards the C-terminal in members which contain
Fmp27_SW pfam10305.
Length = 470
Score = 29.2 bits (66), Expect = 8.5
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 12/84 (14%)
Query: 592 IQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEE----------EEEE 641
+L+ ER ++ EE+ ++ EE+ ++ E + EE+Q + EE EEE E+
Sbjct: 163 RELLE--ERLKQLEEQIKKLEEKLDDLELNDTEELQSDLEELEEELSVLKERLEFLEKLL 220
Query: 642 EEEEEEEEEEEVRGGGKEEISLHF 665
E+ E EE + E S+
Sbjct: 221 EDLERSEESSDRSSSTDTESSIAD 244
>gnl|CDD|226636 COG4166, OppA, ABC-type oligopeptide transport system, periplasmic
component [Amino acid transport and metabolism].
Length = 562
Score = 29.3 bits (66), Expect = 8.7
Identities = 20/97 (20%), Positives = 31/97 (31%), Gaps = 14/97 (14%)
Query: 235 FNPAQKILFDQ-DMSGFTFTINKPKPLC---VRYKDIT-AFD------NALESSTFAPYM 283
+ F +P P VR K ++ A D + P
Sbjct: 292 KDNGDVYKEPTLGTQYLAFNTRRP-PFNDPRVR-KALSLAIDREWLNKQVFGGRST-PAT 348
Query: 284 RFTPPWSNSPPPVDLSLCDGKKSDSAPVVFQSLFREA 320
FTPP ++ P +L+L P + L +EA
Sbjct: 349 SFTPPAASGLPGKELALLAPLPQKDPPEKAKELLKEA 385
>gnl|CDD|227594 COG5269, ZUO1, Ribosome-associated chaperone zuotin [Translation,
ribosomal structure and biogenesis / Posttranslational
modification, protein turnover, chaperones].
Length = 379
Score = 29.2 bits (65), Expect = 8.7
Identities = 10/63 (15%), Positives = 29/63 (46%)
Query: 591 IIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
+ +L++ ++ + + +E+E+E ++ + E E + + + E + + E E E
Sbjct: 218 LKRLVQIAKKRDPRIKSFKEQEKEMKKIRKWEREAGARLKALAALKGKAEAKNKAEIEAE 277
Query: 651 EEV 653
Sbjct: 278 ALA 280
>gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase
(polynucleotide phosphorylase) [Translation, ribosomal
structure and biogenesis].
Length = 692
Score = 29.1 bits (66), Expect = 8.8
Identities = 10/47 (21%), Positives = 23/47 (48%)
Query: 582 EIGSPRIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQE 628
++ ++ + + + ER + +E+ EEE EEE +E++
Sbjct: 247 DLAEDELKEAVGIREKQERSAALDAIKEKIEEELSGEEESSLKEIKA 293
>gnl|CDD|204935 pfam12474, PKK, Polo kinase kinase. This domain family is found in
eukaryotes, and is approximately 140 amino acids in
length. The family is found in association with
pfam00069. Polo-like kinase 1 (Plx1) is essential during
mitosis for the activation of Cdc25C, for spindle
assembly, and for cyclin B degradation. This family is
Polo kinase kinase (PKK) which phosphorylates Polo
kinase and Polo-like kinase to activate them. PKK is a
serine/threonine kinase.
Length = 142
Score = 28.1 bits (63), Expect = 8.9
Identities = 19/96 (19%), Positives = 43/96 (44%), Gaps = 25/96 (26%)
Query: 593 QLIRRGEREEEEEEEEEEEEEEEE------EEEEEE--------------EEEV-----Q 627
QL R+ +R E+ E+ + +E E++ ++EV
Sbjct: 30 QLERQQKRTIEKLEQRQTQELRRLPKRIRAEQKTRLKMFKESLKIEKKELKQEVEKLPRF 89
Query: 628 EEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEEISL 663
+E+E++ + E+EE+E++ +++E E +E +
Sbjct: 90 QEQEKKRMKAEKEEQEQKHQKQEREFLAKQEENLEE 125
>gnl|CDD|214922 smart00935, OmpH, Outer membrane protein (OmpH-like). This family
includes outer membrane proteins such as OmpH among
others. Skp (OmpH) has been characterized as a molecular
chaperone that interacts with unfolded proteins as they
emerge in the periplasm from the Sec translocation
machinery.
Length = 140
Score = 27.9 bits (63), Expect = 8.9
Identities = 13/50 (26%), Positives = 33/50 (66%)
Query: 602 EEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEE 651
E+E ++ + E E+ E+E ++ +E++Q++ E E++E+E +++ +E
Sbjct: 24 EKEFKKRQAELEKLEKELQKLKEKLQKDAATLSEAAREKKEKELQKKVQE 73
>gnl|CDD|225435 COG2880, COG2880, Uncharacterized protein conserved in archaea
[Function unknown].
Length = 67
Score = 26.7 bits (59), Expect = 8.9
Identities = 12/41 (29%), Positives = 22/41 (53%)
Query: 607 EEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEE 647
+E E+ + +E+ E ++ +E +E EE EE E+E
Sbjct: 25 KEGEKVKIVIRVKEKIYEILKGSLKEIKEILEEILEEIEDE 65
>gnl|CDD|226400 COG3883, COG3883, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 265
Score = 28.9 bits (65), Expect = 9.0
Identities = 8/41 (19%), Positives = 18/41 (43%)
Query: 609 EEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEE 649
+E E+ EE++ + E E ++E + +E+
Sbjct: 205 KEASALGEKAALEEQKALAEAAAAEAAKQEAAAKAAAQEQA 245
>gnl|CDD|197886 smart00809, Alpha_adaptinC2, Adaptin C-terminal domain. Adaptins
are components of the adaptor complexes which link
clathrin to receptors in coated vesicles.
Clathrin-associated protein complexes are believed to
interact with the cytoplasmic tails of membrane
proteins, leading to their selection and concentration.
Gamma-adaptin is a subunit of the golgi adaptor. Alpha
adaptin is a heterotetramer that regulates clathrin-bud
formation. The carboxyl-terminal appendage of the alpha
subunit regulates translocation of endocytic accessory
proteins to the bud site. This Ig-fold domain is found
in alpha, beta and gamma adaptins and consists of a
beta-sandwich containing 7 strands in 2 beta-sheets in a
greek-key topology.. The adaptor appendage contains an
additional N-terminal strand.
Length = 104
Score = 27.6 bits (62), Expect = 9.0
Identities = 5/20 (25%), Positives = 10/20 (50%)
Query: 244 DQDMSGFTFTINKPKPLCVR 263
++ F+F PK L ++
Sbjct: 31 PSPITNFSFQAAVPKSLKLQ 50
>gnl|CDD|163133 TIGR03090, SASP_tlp, small, acid-soluble spore protein tlp. This
protein family is restricted to a subset of
endospore-forming bacteria such as Bacillus subtilis,
all of which are in the Firmicutes (low-GC
Gram-positive) lineage. Although previously designated
tlp (thioredoxin-like protein), the B. subtilis protein
was shown to be a minor small acid-soluble spore protein
SASP, unique to spores. The motif E[VIL]XDE near the
C-terminus probably represents at a germination protease
cleavage site [Cellular processes, Sporulation and
germination].
Length = 70
Score = 26.7 bits (59), Expect = 9.0
Identities = 14/55 (25%), Positives = 26/55 (47%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
+++ +I E E E E EEE++ EE+ E +E+ + E ++E
Sbjct: 12 KLQQMIDNTIENMEEANEYIEAHAELSEEEKQRIEEKNERREQSIDGFRSEIKDE 66
>gnl|CDD|220297 pfam09581, Spore_III_AF, Stage III sporulation protein AF
(Spore_III_AF). This family represents the stage III
sporulation protein AF (Spore_III_AF) of the bacterial
endospore formation program, which exists in some but
not all members of the Firmicutes (formerly called
low-GC Gram-positives). The C-terminal region of these
proteins is poorly conserved.
Length = 185
Score = 28.4 bits (64), Expect = 9.1
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 618 EEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVR 654
EE +E+++ + E + + + +EEEEE EE E+++
Sbjct: 131 EESKEKQKSKVEPVVIDTQTSKPKEEEEESEEAEKIK 167
>gnl|CDD|222662 pfam14300, DUF4375, Domain of unknown function (DUF4375). This
family of proteins is found in bacteria. Proteins in
this family are typically between 156 and 204 amino
acids in length. There is a single completely conserved
residue G that may be functionally important.
Length = 123
Score = 27.5 bits (62), Expect = 9.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEE 635
E EE +EE E+ EE +E ++E E EE+ E
Sbjct: 74 PIEREERDEEFMALFEQFEEFDELDDEFYEYEEDLTE 110
>gnl|CDD|226549 COG4063, MtrA, Tetrahydromethanopterin S-methyltransferase, subunit
A [Coenzyme metabolism].
Length = 238
Score = 28.6 bits (64), Expect = 9.3
Identities = 20/55 (36%), Positives = 31/55 (56%)
Query: 587 RIENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEE 641
R + ++L+ + E+ +E + EE E++ EEE + E EEE EEEEEE
Sbjct: 124 RFQQQVELVDLIDVEDPDEITAKVEECVEKDPGAYEEEPMVIEVEEEGEEEEEEG 178
>gnl|CDD|224009 COG1084, COG1084, Predicted GTPase [General function prediction
only].
Length = 346
Score = 28.8 bits (65), Expect = 9.3
Identities = 16/53 (30%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
Query: 600 REEEEEEEEEEEEEEEEEE--EEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEE 650
EE+ EE E EE EE + + ++ EE + E EE EE
Sbjct: 294 DEEKLEEIEASVLEEGGEEPLKISATKGCGLDKLREEVRKTALEPLLEERSEE 346
>gnl|CDD|224173 COG1253, TlyC, Hemolysins and related proteins containing CBS
domains [General function prediction only].
Length = 429
Score = 28.8 bits (65), Expect = 9.4
Identities = 19/47 (40%), Positives = 20/47 (42%)
Query: 588 IENIIQLIRRGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEE 634
+ I I R E EEE EEE E E EE EEEE E
Sbjct: 149 LNRIANAILRLFGVEPVEEEALTSTEEELELVSESAEEGVLEEEERE 195
>gnl|CDD|221952 pfam13166, AAA_13, AAA domain. This family of domains contain a
P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins. This family includes the
PrrC protein that is thought to be the active component
of the anticodon nuclease.
Length = 713
Score = 29.2 bits (66), Expect = 9.5
Identities = 18/65 (27%), Positives = 35/65 (53%)
Query: 601 EEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
EE E E + EE ++E ++ EE+ E E E E++EEE E+ + + ++ +++
Sbjct: 88 EENIEIEAQIEELKKELKKLEEKIEQLEAEIEKKEEELEKAKNKFLDKAWKKLAKKYDSN 147
Query: 661 ISLHF 665
+S
Sbjct: 148 LSEAL 152
>gnl|CDD|215541 PLN03020, PLN03020, low-temperature-induced protein; Provisional.
Length = 556
Score = 28.9 bits (64), Expect = 9.6
Identities = 9/34 (26%), Positives = 20/34 (58%)
Query: 627 QEEEEEEEEEEEEEEEEEEEEEEEEEVRGGGKEE 660
+ ++ + EE+++E+EE E+ ++ GG E
Sbjct: 59 EHRVPDDHDLYEEDDDEDEEMAEDPQIHGGSAYE 92
>gnl|CDD|217838 pfam04004, Leo1, Leo1-like protein. Members of this family are
part of the Paf1/RNA polymerase II complex. The Paf1
complex probably functions during the elongation phase
of transcription. The Leo1 subunit of the yeast
Paf1-complex binds RNA and contributes to complex
recruitment. The subunit acts by co-ordinating
co-transcriptional chromain modifications and helping
recruitment of mRNA 3prime-end processing factors.
Length = 312
Score = 28.7 bits (64), Expect = 9.7
Identities = 10/55 (18%), Positives = 21/55 (38%)
Query: 599 EREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEV 653
+RE++ + +++ E E+ + E EE E E++V
Sbjct: 1 DREQDSHRSNDRNSLSGDDDLSRGGNGDDGEINGEDPSQFSEIEEATETFPEKDV 55
>gnl|CDD|236335 PRK08724, fliD, flagellar capping protein; Validated.
Length = 673
Score = 29.1 bits (65), Expect = 9.8
Identities = 14/64 (21%), Positives = 26/64 (40%)
Query: 597 RGEREEEEEEEEEEEEEEEEEEEEEEEEEVQEEEEEEEEEEEEEEEEEEEEEEEEEVRGG 656
EE++ E +EE ++EV EE ++ + +++E EE + G
Sbjct: 224 IAPLTPEEQKVAPELSDEEGNAIPPADQEVAEEIQDAAQIAQQQEATAALAALEEPISAG 283
Query: 657 GKEE 660
G
Sbjct: 284 GATA 287
>gnl|CDD|236987 PRK11798, PRK11798, ClpXP protease specificity-enhancing factor;
Provisional.
Length = 138
Score = 27.9 bits (63), Expect = 9.9
Identities = 7/29 (24%), Positives = 16/29 (55%)
Query: 630 EEEEEEEEEEEEEEEEEEEEEEEVRGGGK 658
E E +E+E +++ + ++E GG+
Sbjct: 103 EPEAAYDEDEHDDDTDPDDEPPPPPRGGR 131
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.317 0.134 0.401
Gapped
Lambda K H
0.267 0.0812 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 35,599,526
Number of extensions: 3614219
Number of successful extensions: 60250
Number of sequences better than 10.0: 1
Number of HSP's gapped: 32582
Number of HSP's successfully gapped: 5543
Length of query: 682
Length of database: 10,937,602
Length adjustment: 103
Effective length of query: 579
Effective length of database: 6,369,140
Effective search space: 3687732060
Effective search space used: 3687732060
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (27.5 bits)