BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy3429
         (192 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|328714228|ref|XP_003245303.1| PREDICTED: hypothetical protein LOC100575011 [Acyrthosiphon pisum]
          Length = 518

 Score =  213 bits (541), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 109/142 (76%), Positives = 118/142 (83%), Gaps = 6/142 (4%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           DSN G+PPKL  NLRKHKPNRKPRTPFTTQQLL+LEKKFREKQYLSIAERAEFS+SLHLT
Sbjct: 311 DSNNGEPPKLKCNLRKHKPNRKPRTPFTTQQLLNLEKKFREKQYLSIAERAEFSNSLHLT 370

Query: 82  ETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARP-HPLYGPGPSPHLHQYFQHASPEA 140
           ETQVKIWFQNRRAKAKRLQEAEIEK+KM+A+AAARP HPLYG   +PHL  YFQH  P  
Sbjct: 371 ETQVKIWFQNRRAKAKRLQEAEIEKLKMAAVAAARPHHPLYG---NPHLPHYFQH--PSE 425

Query: 141 LLHHPHPFSALLGRHPAMAHFM 162
           L  H H   +LL   P MAH +
Sbjct: 426 LFGHQHQLQSLLSHRPTMAHLI 447


>gi|242018184|ref|XP_002429560.1| Homeobox protein MSX-1, putative [Pediculus humanus corporis]
 gi|212514514|gb|EEB16822.1| Homeobox protein MSX-1, putative [Pediculus humanus corporis]
          Length = 200

 Score =  204 bits (519), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 111/149 (74%), Positives = 117/149 (78%), Gaps = 9/149 (6%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
           L  SN G+PPKL  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH
Sbjct: 9   LKHSNSGEPPKLKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 68

Query: 80  LTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQH--AS 137
           LTETQVKIWFQNRRAKAKRLQEAEIEK+KM+A+AAARP  +YGP   P L QYF H    
Sbjct: 69  LTETQVKIWFQNRRAKAKRLQEAEIEKLKMAAVAAARPPHIYGPPHHPALQQYFHHHPEH 128

Query: 138 PEALL------HHPHPFSALL-GRHPAMA 159
           P A L      HH    +ALL GRHP M 
Sbjct: 129 PAAALFSSPSPHHAAAVTALLQGRHPGMV 157


>gi|91091014|ref|XP_975059.1| PREDICTED: similar to Drop CG1897-PA [Tribolium castaneum]
 gi|270013175|gb|EFA09623.1| hypothetical protein TcasGA2_TC011744 [Tribolium castaneum]
          Length = 292

 Score =  175 bits (444), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 100/155 (64%), Positives = 114/155 (73%), Gaps = 15/155 (9%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           DSN G+ PKL  NLRKHKPNRKPRTPFTTQQLL+LEKKFR+KQYLSIAERAEFSSSL LT
Sbjct: 141 DSN-GEAPKLKCNLRKHKPNRKPRTPFTTQQLLALEKKFRDKQYLSIAERAEFSSSLRLT 199

Query: 82  ETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEAL 141
           ETQVKIWFQNRRAKAKRLQEAE+EK+KM+++ +  PHPLY   P P L  YF   +    
Sbjct: 200 ETQVKIWFQNRRAKAKRLQEAELEKLKMASL-SRHPHPLY---PHPALQGYFPPGA---- 251

Query: 142 LHHPHPFSALLGRHPAMA--HFMPAAPMPQNSPPG 174
               HP ++LLG  P M     +P  P   +SP G
Sbjct: 252 ----HPLASLLGARPPMGPLGLIPQPPPHMSSPQG 282


>gi|198449864|ref|XP_001357750.2| GA15116 [Drosophila pseudoobscura pseudoobscura]
 gi|198130789|gb|EAL26884.2| GA15116 [Drosophila pseudoobscura pseudoobscura]
          Length = 533

 Score =  167 bits (422), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/94 (84%), Positives = 85/94 (90%)

Query: 24  NKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTET 83
           +  +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL LTET
Sbjct: 422 DANEPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRLTET 481

Query: 84  QVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARP 117
           QVKIWFQNRRAKAKRLQEAEIEKIKM+A+    P
Sbjct: 482 QVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAP 515


>gi|194765260|ref|XP_001964745.1| GF23351 [Drosophila ananassae]
 gi|190615017|gb|EDV30541.1| GF23351 [Drosophila ananassae]
          Length = 530

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 81/97 (83%), Positives = 87/97 (89%), Gaps = 2/97 (2%)

Query: 21  SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
            D+N  +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL L
Sbjct: 418 GDAN--EPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRL 475

Query: 81  TETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARP 117
           TETQVKIWFQNRRAKAKRLQEAEIEKIKM+A+    P
Sbjct: 476 TETQVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAP 512


>gi|195445065|ref|XP_002070156.1| GK11900 [Drosophila willistoni]
 gi|194166241|gb|EDW81142.1| GK11900 [Drosophila willistoni]
          Length = 515

 Score =  166 bits (421), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 79/94 (84%), Positives = 85/94 (90%)

Query: 24  NKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTET 83
           +  +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL LTET
Sbjct: 404 DANEPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRLTET 463

Query: 84  QVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARP 117
           QVKIWFQNRRAKAKRLQEAEIEKIKM+A+    P
Sbjct: 464 QVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAP 497


>gi|195036336|ref|XP_001989626.1| GH18901 [Drosophila grimshawi]
 gi|193893822|gb|EDV92688.1| GH18901 [Drosophila grimshawi]
          Length = 545

 Score =  166 bits (420), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 81/96 (84%), Positives = 87/96 (90%), Gaps = 2/96 (2%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           D+N  +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL LT
Sbjct: 434 DAN--EPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRLT 491

Query: 82  ETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARP 117
           ETQVKIWFQNRRAKAKRLQEAEIEKIKM+A+    P
Sbjct: 492 ETQVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAP 527


>gi|157113786|ref|XP_001657901.1| hypothetical protein AaeL_AAEL006593 [Aedes aegypti]
 gi|108877576|gb|EAT41801.1| AAEL006593-PA [Aedes aegypti]
          Length = 121

 Score =  166 bits (419), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 81/100 (81%), Positives = 88/100 (88%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           D+   +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL LT
Sbjct: 6   DAEYNEPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRLT 65

Query: 82  ETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLY 121
           ETQVKIWFQNRRAKAKRLQEAE+EKIKM+A+  A    LY
Sbjct: 66  ETQVKIWFQNRRAKAKRLQEAELEKIKMAALGRAPGAQLY 105


>gi|345497030|ref|XP_001601013.2| PREDICTED: hypothetical protein LOC100116547 [Nasonia vitripennis]
          Length = 389

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 82/105 (78%), Positives = 91/105 (86%), Gaps = 5/105 (4%)

Query: 23  SNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTE 82
           +  G+P K+  NLRKHKPNRKPRTPFTTQQLL+LEKKFRE+QYLS+AERAEFSSSLHLTE
Sbjct: 241 NENGEPAKIKCNLRKHKPNRKPRTPFTTQQLLALEKKFRERQYLSVAERAEFSSSLHLTE 300

Query: 83  TQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPH--PLYGPGP 125
           TQVKIWFQNRRAKAKRLQEAEIEK++MSA+   R H   LYG  P
Sbjct: 301 TQVKIWFQNRRAKAKRLQEAEIEKLRMSAV---RQHHTALYGSHP 342


>gi|195574761|ref|XP_002105352.1| GD21441 [Drosophila simulans]
 gi|194201279|gb|EDX14855.1| GD21441 [Drosophila simulans]
          Length = 514

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 81/97 (83%), Positives = 87/97 (89%), Gaps = 2/97 (2%)

Query: 21  SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
            D+N  +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL L
Sbjct: 402 GDAN--EPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRL 459

Query: 81  TETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARP 117
           TETQVKIWFQNRRAKAKRLQEAEIEKIKM+A+    P
Sbjct: 460 TETQVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAP 496


>gi|307186342|gb|EFN71992.1| Muscle segmentation homeobox [Camponotus floridanus]
          Length = 424

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 82/103 (79%), Positives = 90/103 (87%), Gaps = 5/103 (4%)

Query: 25  KGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQ 84
            G+P K+  NLRKHKPNRKPRTPFTTQQLL+LEKKFRE+QYLS+AERAEFSSSLHLTETQ
Sbjct: 293 NGEPAKIKCNLRKHKPNRKPRTPFTTQQLLALEKKFRERQYLSVAERAEFSSSLHLTETQ 352

Query: 85  VKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPH--PLYGPGP 125
           VKIWFQNRRAKAKRLQEAEIEK++MSA+   R H   LYG  P
Sbjct: 353 VKIWFQNRRAKAKRLQEAEIEKLRMSAV---RQHHTALYGSHP 392


>gi|17137470|ref|NP_477324.1| drop [Drosophila melanogaster]
 gi|81175174|sp|Q03372.2|HMSH_DROME RecName: Full=Muscle segmentation homeobox; AltName: Full=Protein
           drop; AltName: Full=Protein msh
 gi|17861984|gb|AAL39469.1| LD04235p [Drosophila melanogaster]
 gi|23172574|gb|AAF56902.2| drop [Drosophila melanogaster]
 gi|220943260|gb|ACL84173.1| Dr-PA [synthetic construct]
 gi|220953440|gb|ACL89263.1| Dr-PA [synthetic construct]
          Length = 515

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 81/97 (83%), Positives = 87/97 (89%), Gaps = 2/97 (2%)

Query: 21  SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
            D+N  +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL L
Sbjct: 403 GDAN--EPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRL 460

Query: 81  TETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARP 117
           TETQVKIWFQNRRAKAKRLQEAEIEKIKM+A+    P
Sbjct: 461 TETQVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAP 497


>gi|195109552|ref|XP_001999348.1| GI23117 [Drosophila mojavensis]
 gi|193915942|gb|EDW14809.1| GI23117 [Drosophila mojavensis]
          Length = 537

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 79/94 (84%), Positives = 85/94 (90%)

Query: 24  NKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTET 83
           +  +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL LTET
Sbjct: 426 DANEPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRLTET 485

Query: 84  QVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARP 117
           QVKIWFQNRRAKAKRLQEAEIEKIKM+A+    P
Sbjct: 486 QVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAP 519


>gi|194906293|ref|XP_001981346.1| GG11670 [Drosophila erecta]
 gi|190655984|gb|EDV53216.1| GG11670 [Drosophila erecta]
          Length = 520

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 81/97 (83%), Positives = 87/97 (89%), Gaps = 2/97 (2%)

Query: 21  SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
            D+N  +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL L
Sbjct: 408 GDAN--EPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRL 465

Query: 81  TETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARP 117
           TETQVKIWFQNRRAKAKRLQEAEIEKIKM+A+    P
Sbjct: 466 TETQVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAP 502


>gi|195503272|ref|XP_002098582.1| GE23858 [Drosophila yakuba]
 gi|194184683|gb|EDW98294.1| GE23858 [Drosophila yakuba]
          Length = 517

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 81/97 (83%), Positives = 87/97 (89%), Gaps = 2/97 (2%)

Query: 21  SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
            D+N  +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL L
Sbjct: 405 GDAN--EPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRL 462

Query: 81  TETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARP 117
           TETQVKIWFQNRRAKAKRLQEAEIEKIKM+A+    P
Sbjct: 463 TETQVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAP 499


>gi|1098680|gb|AAC47329.1| MSH [Drosophila melanogaster]
 gi|2253498|gb|AAB62975.1| muscle segment homeobox [Drosophila melanogaster]
          Length = 515

 Score =  166 bits (419), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 81/97 (83%), Positives = 87/97 (89%), Gaps = 2/97 (2%)

Query: 21  SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
            D+N  +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL L
Sbjct: 403 GDAN--EPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRL 460

Query: 81  TETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARP 117
           TETQVKIWFQNRRAKAKRLQEAEIEKIKM+A+    P
Sbjct: 461 TETQVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAP 497


>gi|195394411|ref|XP_002055836.1| GJ10606 [Drosophila virilis]
 gi|194142545|gb|EDW58948.1| GJ10606 [Drosophila virilis]
          Length = 505

 Score =  165 bits (418), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 79/94 (84%), Positives = 85/94 (90%)

Query: 24  NKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTET 83
           +  +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL LTET
Sbjct: 394 DANEPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRLTET 453

Query: 84  QVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARP 117
           QVKIWFQNRRAKAKRLQEAEIEKIKM+A+    P
Sbjct: 454 QVKIWFQNRRAKAKRLQEAEIEKIKMAALGRGAP 487


>gi|347970363|ref|XP_313452.4| AGAP003669-PA [Anopheles gambiae str. PEST]
 gi|333468898|gb|EAA08817.4| AGAP003669-PA [Anopheles gambiae str. PEST]
          Length = 373

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 80/95 (84%), Positives = 86/95 (90%)

Query: 27  DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL LTETQVK
Sbjct: 263 EPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRLTETQVK 322

Query: 87  IWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLY 121
           IWFQNRRAKAKRLQEAE+EKIKM+A+  A    LY
Sbjct: 323 IWFQNRRAKAKRLQEAELEKIKMAALGRAPGAQLY 357


>gi|322793616|gb|EFZ17066.1| hypothetical protein SINV_00980 [Solenopsis invicta]
          Length = 421

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/105 (78%), Positives = 91/105 (86%), Gaps = 5/105 (4%)

Query: 23  SNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTE 82
           +  G+P K+  NLRKHKPNRKPRTPFTTQQLL+LEKKFRE+QYLS+AERAEFSSSLHLTE
Sbjct: 288 NENGEPAKIKCNLRKHKPNRKPRTPFTTQQLLALEKKFRERQYLSVAERAEFSSSLHLTE 347

Query: 83  TQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPH--PLYGPGP 125
           TQVKIWFQNRRAKAKRLQEAEIEK++MSA+   R H   LYG  P
Sbjct: 348 TQVKIWFQNRRAKAKRLQEAEIEKLRMSAV---RQHHTALYGTHP 389


>gi|332023747|gb|EGI63971.1| Muscle segmentation homeobox [Acromyrmex echinatior]
          Length = 436

 Score =  164 bits (416), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 82/105 (78%), Positives = 91/105 (86%), Gaps = 5/105 (4%)

Query: 23  SNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTE 82
           +  G+P K+  NLRKHKPNRKPRTPFTTQQLL+LEKKFRE+QYLS+AERAEFSSSLHLTE
Sbjct: 303 NENGEPAKIKCNLRKHKPNRKPRTPFTTQQLLALEKKFRERQYLSVAERAEFSSSLHLTE 362

Query: 83  TQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPH--PLYGPGP 125
           TQVKIWFQNRRAKAKRLQEAEIEK++MSA+   R H   LYG  P
Sbjct: 363 TQVKIWFQNRRAKAKRLQEAEIEKLRMSAV---RQHHTALYGSHP 404


>gi|170035839|ref|XP_001845774.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167878298|gb|EDS41681.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 153

 Score =  164 bits (414), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 80/95 (84%), Positives = 86/95 (90%)

Query: 27  DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL LTETQVK
Sbjct: 42  EPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRLTETQVK 101

Query: 87  IWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLY 121
           IWFQNRRAKAKRLQEAE+EKIKM+A+  A    LY
Sbjct: 102 IWFQNRRAKAKRLQEAELEKIKMAALGRAPGAQLY 136


>gi|383856764|ref|XP_003703877.1| PREDICTED: uncharacterized protein LOC100881645 [Megachile
           rotundata]
          Length = 415

 Score =  163 bits (412), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 89/102 (87%), Gaps = 5/102 (4%)

Query: 26  GDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQV 85
           G+P K+  NLRKHKPNRKPRTPFTTQQLL+LEKKF E+QYLS+AERAEFSSSLHLTETQV
Sbjct: 285 GEPAKIKCNLRKHKPNRKPRTPFTTQQLLALEKKFTERQYLSVAERAEFSSSLHLTETQV 344

Query: 86  KIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPH--PLYGPGP 125
           KIWFQNRRAKAKR+QEAEIEK++MSA+   R H   LYG  P
Sbjct: 345 KIWFQNRRAKAKRMQEAEIEKLRMSAV---RQHHTALYGSHP 383


>gi|328791711|ref|XP_001120268.2| PREDICTED: hypothetical protein LOC724412 [Apis mellifera]
          Length = 428

 Score =  162 bits (409), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 80/102 (78%), Positives = 89/102 (87%), Gaps = 5/102 (4%)

Query: 26  GDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQV 85
           G+P K+  NLRKHKPNRKPRTPFTTQQLL+LEKKF E+QYLS+AERAEFSSSLHLTETQV
Sbjct: 297 GEPAKIKCNLRKHKPNRKPRTPFTTQQLLALEKKFTERQYLSVAERAEFSSSLHLTETQV 356

Query: 86  KIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPH--PLYGPGP 125
           KIWFQNRRAKAKR+QEAEIEK++MSA+   R H   LYG  P
Sbjct: 357 KIWFQNRRAKAKRMQEAEIEKLRMSAV---RQHHTTLYGSHP 395


>gi|380028571|ref|XP_003697969.1| PREDICTED: uncharacterized protein LOC100868820 [Apis florea]
          Length = 426

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 80/105 (76%), Positives = 90/105 (85%), Gaps = 5/105 (4%)

Query: 23  SNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTE 82
           +  G+P K+  NLRKHKPNRKPRTPFTTQQLL+LEKKF E+QYLS+AERAEFSSSLHLTE
Sbjct: 293 NENGEPAKIKCNLRKHKPNRKPRTPFTTQQLLALEKKFTERQYLSVAERAEFSSSLHLTE 352

Query: 83  TQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPH--PLYGPGP 125
           TQVKIWFQNRRAKAKR+QEAEIEK++MSA+   R H   LYG  P
Sbjct: 353 TQVKIWFQNRRAKAKRMQEAEIEKLRMSAV---RQHHTTLYGSHP 394


>gi|307214833|gb|EFN89713.1| Muscle segmentation homeobox [Harpegnathos saltator]
          Length = 425

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 81/104 (77%), Positives = 89/104 (85%), Gaps = 5/104 (4%)

Query: 25  KGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQ 84
            G+P K+  NLRKHKPNRKPRTPFTT QLL+LEKKFRE+QYLS+AERAEFSSSL LTETQ
Sbjct: 294 NGEPAKIKCNLRKHKPNRKPRTPFTTNQLLALEKKFRERQYLSVAERAEFSSSLSLTETQ 353

Query: 85  VKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPH--PLYGPGPS 126
           VKIWFQNRRAKAKRLQEAEIEK++MSA+   R H   LYG  PS
Sbjct: 354 VKIWFQNRRAKAKRLQEAEIEKLRMSAV---RQHHTALYGSHPS 394


>gi|350412939|ref|XP_003489824.1| PREDICTED: hypothetical protein LOC100741188 [Bombus impatiens]
          Length = 417

 Score =  160 bits (405), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 86/100 (86%), Gaps = 1/100 (1%)

Query: 26  GDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQV 85
           G+P K+  NLRKHKPNRKPRTPFTTQQLL+LEKKF E+QYLS+AERAEFSSSLHLTETQV
Sbjct: 287 GEPAKIKCNLRKHKPNRKPRTPFTTQQLLALEKKFTERQYLSVAERAEFSSSLHLTETQV 346

Query: 86  KIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGP 125
           KIWFQNRRAKAKR+QEAEIEK++M A+       LYG  P
Sbjct: 347 KIWFQNRRAKAKRMQEAEIEKLRMCAVRQQHT-TLYGSHP 385


>gi|340708588|ref|XP_003392905.1| PREDICTED: hypothetical protein LOC100648154 [Bombus terrestris]
          Length = 412

 Score =  160 bits (404), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 77/100 (77%), Positives = 86/100 (86%), Gaps = 1/100 (1%)

Query: 26  GDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQV 85
           G+P K+  NLRKHKPNRKPRTPFTTQQLL+LEKKF E+QYLS+AERAEFSSSLHLTETQV
Sbjct: 282 GEPAKIKCNLRKHKPNRKPRTPFTTQQLLALEKKFTERQYLSVAERAEFSSSLHLTETQV 341

Query: 86  KIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGP 125
           KIWFQNRRAKAKR+QEAEIEK++M A+       LYG  P
Sbjct: 342 KIWFQNRRAKAKRMQEAEIEKLRMCAVRQQHT-TLYGSHP 380


>gi|350413206|ref|XP_003489916.1| PREDICTED: hypothetical protein LOC100741791 [Bombus impatiens]
          Length = 533

 Score =  159 bits (402), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 80/99 (80%), Positives = 86/99 (86%), Gaps = 6/99 (6%)

Query: 28  PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKI 87
           P  +   LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYL+IAERAEFSSSLHLTETQVKI
Sbjct: 353 PGPVRCTLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKI 412

Query: 88  WFQNRRAKAKRLQEAEIEKIKMSAIAAARP--HPLYGPG 124
           WFQNRRAKAKRLQEAEIEK+++S    ARP  HP +G G
Sbjct: 413 WFQNRRAKAKRLQEAEIEKLRLS----ARPLLHPSFGSG 447


>gi|340708616|ref|XP_003392918.1| PREDICTED: hypothetical protein LOC100649911 [Bombus terrestris]
          Length = 582

 Score =  158 bits (400), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 80/99 (80%), Positives = 86/99 (86%), Gaps = 6/99 (6%)

Query: 28  PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKI 87
           P  +   LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYL+IAERAEFSSSLHLTETQVKI
Sbjct: 445 PGPVRCTLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKI 504

Query: 88  WFQNRRAKAKRLQEAEIEKIKMSAIAAARP--HPLYGPG 124
           WFQNRRAKAKRLQEAEIEK+++S    ARP  HP +G G
Sbjct: 505 WFQNRRAKAKRLQEAEIEKLRLS----ARPLLHPSFGSG 539


>gi|339717142|ref|NP_001108550.1| homeobox protein H17 [Apis mellifera]
 gi|168693293|dbj|BAG11599.1| Msx protein [Apis mellifera]
          Length = 506

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/99 (80%), Positives = 86/99 (86%), Gaps = 6/99 (6%)

Query: 28  PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKI 87
           P  +   LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYL+IAERAEFSSSLHLTETQVKI
Sbjct: 369 PGPVRCTLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKI 428

Query: 88  WFQNRRAKAKRLQEAEIEKIKMSAIAAARP--HPLYGPG 124
           WFQNRRAKAKRLQEAEIEK+++S    ARP  HP +G G
Sbjct: 429 WFQNRRAKAKRLQEAEIEKLRLS----ARPLLHPSFGSG 463


>gi|383856766|ref|XP_003703878.1| PREDICTED: uncharacterized protein LOC100881753 [Megachile
           rotundata]
          Length = 485

 Score =  157 bits (398), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 80/99 (80%), Positives = 86/99 (86%), Gaps = 6/99 (6%)

Query: 28  PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKI 87
           P  +   LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYL+IAERAEFSSSLHLTETQVKI
Sbjct: 348 PGPVRCTLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKI 407

Query: 88  WFQNRRAKAKRLQEAEIEKIKMSAIAAARP--HPLYGPG 124
           WFQNRRAKAKRLQEAEIEK+++S    ARP  HP +G G
Sbjct: 408 WFQNRRAKAKRLQEAEIEKLRLS----ARPLLHPSFGSG 442


>gi|307186343|gb|EFN71993.1| Homeobox protein H17 [Camponotus floridanus]
          Length = 545

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/99 (80%), Positives = 86/99 (86%), Gaps = 6/99 (6%)

Query: 28  PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKI 87
           P  +   LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYL+IAERAEFSSSLHLTETQVKI
Sbjct: 408 PGPVRCTLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKI 467

Query: 88  WFQNRRAKAKRLQEAEIEKIKMSAIAAARP--HPLYGPG 124
           WFQNRRAKAKRLQEAEIEK+++S    ARP  HP +G G
Sbjct: 468 WFQNRRAKAKRLQEAEIEKLRLS----ARPLLHPSFGSG 502


>gi|332023745|gb|EGI63969.1| Homeobox protein XHOX-7.1' [Acromyrmex echinatior]
          Length = 485

 Score =  157 bits (396), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 80/99 (80%), Positives = 86/99 (86%), Gaps = 6/99 (6%)

Query: 28  PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKI 87
           P  +   LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYL+IAERAEFSSSLHLTETQVKI
Sbjct: 348 PGPVRCTLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKI 407

Query: 88  WFQNRRAKAKRLQEAEIEKIKMSAIAAARP--HPLYGPG 124
           WFQNRRAKAKRLQEAEIEK+++S    ARP  HP +G G
Sbjct: 408 WFQNRRAKAKRLQEAEIEKLRLS----ARPLLHPSFGSG 442


>gi|853822|emb|CAA59680.1| msh [Drosophila melanogaster]
          Length = 437

 Score =  156 bits (394), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 77/85 (90%), Positives = 79/85 (92%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
           V LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 335 VQLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRLTETQVKIWFQNR 394

Query: 93  RAKAKRLQEAEIEKIKMSAIAAARP 117
           RAKAKRLQEAEIEKIKM+A+    P
Sbjct: 395 RAKAKRLQEAEIEKIKMAALGRGAP 419


>gi|357603008|gb|EHJ63592.1| hypothetical protein KGM_02241 [Danaus plexippus]
          Length = 312

 Score =  155 bits (393), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 82/116 (70%), Positives = 94/116 (81%), Gaps = 6/116 (5%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
           ++D+N G+PPKL  NLRKHKPNRKPRTPFT QQL +LE KF +KQYLSIAERAEFSSSL 
Sbjct: 172 ITDAN-GEPPKLKCNLRKHKPNRKPRTPFTAQQLRALESKFVDKQYLSIAERAEFSSSLG 230

Query: 80  LTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQH 135
           L+ETQVKIWFQNRRAKAKR+QEAEIEK+KM+   A  PH +Y    +  L QYF H
Sbjct: 231 LSETQVKIWFQNRRAKAKRVQEAEIEKLKMAQF-ARHPHHMY----THPLQQYFPH 281


>gi|357603007|gb|EHJ63591.1| hypothetical protein KGM_02240 [Danaus plexippus]
          Length = 305

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 84/133 (63%), Positives = 92/133 (69%), Gaps = 21/133 (15%)

Query: 19  LLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL 78
            LS      PP +   LRKHKPNRKPRTPFTTQQLL+LEKKFR+KQYLSIAERAEFSSSL
Sbjct: 160 CLSAGAPSGPPVVRCQLRKHKPNRKPRTPFTTQQLLALEKKFRDKQYLSIAERAEFSSSL 219

Query: 79  HLTETQVKIWFQNRRAKAKRLQEAEIEKIKMS---------------------AIAAARP 117
            LTETQVKIWFQNRRAKAKRLQEAEIEK+++S                     A+AAARP
Sbjct: 220 RLTETQVKIWFQNRRAKAKRLQEAEIEKLRLSARPLLPPSFALFGGGTPPLFAAMAAARP 279

Query: 118 HPLYGPGPSPHLH 130
              +  GP  H H
Sbjct: 280 QLSFLGGPPTHQH 292


>gi|123234|sp|P15857.1|HM17_APIME RecName: Full=Homeobox protein H17
 gi|155672|gb|AAA27726.1| H17 protein, partial [Apis mellifera]
          Length = 79

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 73/79 (92%), Positives = 77/79 (97%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYL+IAERAEFSSSLHLTETQVKIWFQNR
Sbjct: 1   CTLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVKIWFQNR 60

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAEIEK+++SA
Sbjct: 61  RAKAKRLQEAEIEKLRLSA 79


>gi|321455195|gb|EFX66335.1| putative transcriptional factor muscle segment homeobox protein
           [Daphnia pulex]
          Length = 555

 Score =  152 bits (385), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 75/110 (68%), Positives = 87/110 (79%), Gaps = 9/110 (8%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           +L   LRKHKPNRKPRTPFTTQQL++LEKKFREKQYLSIAERAEFS+SL LTETQVKIWF
Sbjct: 359 QLRCQLRKHKPNRKPRTPFTTQQLMALEKKFREKQYLSIAERAEFSASLSLTETQVKIWF 418

Query: 90  QNRRAKAKRLQEAEIEKIKMSAIA---------AARPHPLYGPGPSPHLH 130
           QNRRAKAKRLQEAE+EK++M++           +A    L+GPG    L+
Sbjct: 419 QNRRAKAKRLQEAELEKLRMTSRGPLGHLMSPHSAAAFGLFGPGAMSGLY 468


>gi|156552704|ref|XP_001599823.1| PREDICTED: homeobox protein H17-like, partial [Nasonia vitripennis]
          Length = 146

 Score =  151 bits (382), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 79/98 (80%), Positives = 85/98 (86%), Gaps = 6/98 (6%)

Query: 27  DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
            P  +   LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYL+IAERAEFSSSLHLTETQVK
Sbjct: 8   GPGPVRCTLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLTIAERAEFSSSLHLTETQVK 67

Query: 87  IWFQNRRAKAKRLQEAEIEKIKMSAIAAARP--HPLYG 122
           IWFQNRRAKAKRLQEAEIEK+++S    ARP  HP +G
Sbjct: 68  IWFQNRRAKAKRLQEAEIEKLRLS----ARPLLHPSFG 101


>gi|47551195|ref|NP_999778.1| homeodomain protein [Strongylocentrotus purpuratus]
 gi|2809213|gb|AAB97688.1| SpMsx [Strongylocentrotus purpuratus]
          Length = 286

 Score =  150 bits (380), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 85/101 (84%), Gaps = 6/101 (5%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           PK+   LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIW
Sbjct: 166 PKVQCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKIW 225

Query: 89  FQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHL 129
           FQNRRAKAKRLQEAE+EK+KM+A       P++ PG   H+
Sbjct: 226 FQNRRAKAKRLQEAELEKLKMAA------KPMFAPGLGMHI 260


>gi|158936904|dbj|BAF91567.1| MsxA protein [Patiria pectinifera]
 gi|158936906|dbj|BAF91568.1| MsxB protein [Patiria pectinifera]
          Length = 346

 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/148 (58%), Positives = 100/148 (67%), Gaps = 15/148 (10%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           PK+   LRKHK NRKPRTPFTT QLLSLE+KFR+KQYLSIAERAEFS+SL+LTETQVKIW
Sbjct: 195 PKVQCTLRKHKTNRKPRTPFTTSQLLSLERKFRQKQYLSIAERAEFSASLNLTETQVKIW 254

Query: 89  FQNRRAKAKRLQEAEIEKIKMSA-------IAAARPHPLYGPGPSPHLHQYFQHASPEAL 141
           FQNRRAKAKRLQEAE+EK+KM+A            P   Y  G   HLH   +HA+   L
Sbjct: 255 FQNRRAKAKRLQEAELEKLKMAAKPLLPPGFGLPFPPTYYSLG---HLH---RHAAMPGL 308

Query: 142 LH--HPHPFSALLGRHPAMAHFMPAAPM 167
           L      P+S   G     AH  P+A +
Sbjct: 309 LQPLQFSPYSYFPGSATGTAHHGPSASL 336


>gi|158936912|dbj|BAF91571.1| MsxB protein [Tubifex tubifex]
          Length = 420

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 86/106 (81%), Gaps = 9/106 (8%)

Query: 26  GDPPKLN---VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTE 82
           G PP+++     LRKHK NRKPRTPFTTQQLL+LE+KFRE+QYLSIAERAEFS+SL LTE
Sbjct: 271 GSPPRISPQKCLLRKHKTNRKPRTPFTTQQLLALERKFRERQYLSIAERAEFSASLSLTE 330

Query: 83  TQVKIWFQNRRAKAKRLQEAEIEKIKMSA------IAAARPHPLYG 122
           TQVKIWFQNRRAK+KRLQEAE+EKIKM+A       A   P  LYG
Sbjct: 331 TQVKIWFQNRRAKSKRLQEAELEKIKMAARGPLLGSALGMPFSLYG 376


>gi|158936910|dbj|BAF91570.1| MsxA protein [Tubifex tubifex]
          Length = 428

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 76/106 (71%), Positives = 86/106 (81%), Gaps = 9/106 (8%)

Query: 26  GDPPKLN---VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTE 82
           G PP+++     LRKHK NRKPRTPFTTQQLL+LE+KFRE+QYLSIAERAEFS+SL LTE
Sbjct: 279 GSPPRISPQKCLLRKHKTNRKPRTPFTTQQLLALERKFRERQYLSIAERAEFSASLSLTE 338

Query: 83  TQVKIWFQNRRAKAKRLQEAEIEKIKMSA------IAAARPHPLYG 122
           TQVKIWFQNRRAK+KRLQEAE+EKIKM+A       A   P  LYG
Sbjct: 339 TQVKIWFQNRRAKSKRLQEAELEKIKMAARGPLLGSALGMPFSLYG 384


>gi|68144514|gb|AAY86178.1| homeodomain protein Msx [Heliocidaris tuberculata]
          Length = 317

 Score =  149 bits (375), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 85/101 (84%), Gaps = 6/101 (5%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           PK+   LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIW
Sbjct: 169 PKVQCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKIW 228

Query: 89  FQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHL 129
           FQNRRAKAKRLQEAE+EK+KM+A       P++ PG   H+
Sbjct: 229 FQNRRAKAKRLQEAELEKLKMAA------KPMFAPGLGMHI 263


>gi|68144512|gb|AAY86177.1| homeodomain protein Msx [Heliocidaris erythrogramma]
          Length = 317

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 73/101 (72%), Positives = 85/101 (84%), Gaps = 6/101 (5%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           PK+   LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIW
Sbjct: 169 PKVQCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKIW 228

Query: 89  FQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHL 129
           FQNRRAKAKRLQEAE+EK+KM+A       P++ PG   H+
Sbjct: 229 FQNRRAKAKRLQEAELEKLKMAA------KPMFAPGLGMHI 263


>gi|270014052|gb|EFA10500.1| hypothetical protein TcasGA2_TC012748 [Tribolium castaneum]
          Length = 232

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 72/84 (85%), Positives = 79/84 (94%)

Query: 28  PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKI 87
           PP +   LRKHKPNRKPRTPFTTQQLL+LEKKFR+KQYLSIAERAEFSSSL LTETQVKI
Sbjct: 102 PPIVRCALRKHKPNRKPRTPFTTQQLLALEKKFRDKQYLSIAERAEFSSSLRLTETQVKI 161

Query: 88  WFQNRRAKAKRLQEAEIEKIKMSA 111
           WFQNRRAKAKRLQEAE+EK+++SA
Sbjct: 162 WFQNRRAKAKRLQEAELEKLRLSA 185


>gi|348507220|ref|XP_003441154.1| PREDICTED: homeobox protein MSH-C-like [Oreochromis niloticus]
          Length = 255

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 76/102 (74%), Positives = 84/102 (82%), Gaps = 4/102 (3%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
            NLRKHK NRKPRTPFTT QLLSLE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 128 CNLRKHKNNRKPRTPFTTSQLLSLERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 187

Query: 93  RAKAKRLQEAEIEKIKMSAI----AAARPHPLYGPGPSPHLH 130
           RAKAKRLQEAE+EK+K++      A A P PL  P  +P L+
Sbjct: 188 RAKAKRLQEAELEKLKLATKPLLPAFAFPFPLSAPIGAPALY 229


>gi|339244641|ref|XP_003378246.1| homeobox protein MSH-B [Trichinella spiralis]
 gi|316972863|gb|EFV56509.1| homeobox protein MSH-B [Trichinella spiralis]
          Length = 1312

 Score =  147 bits (371), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 79/110 (71%), Positives = 87/110 (79%), Gaps = 6/110 (5%)

Query: 35   LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
            LRKHK NRKPRTPFTTQQLLSLE+KFR+KQYLS+AERAEFSSSL+LTETQVKIWFQNRRA
Sbjct: 1187 LRKHKGNRKPRTPFTTQQLLSLERKFRQKQYLSVAERAEFSSSLNLTETQVKIWFQNRRA 1246

Query: 95   KAKRLQEAEIEKIKMSAIAAARP--HPLYGPGPSPHLHQYFQHASPEALL 142
            KAKRLQEAE EK K+  ++  +P   P      SP L QY    SPEA L
Sbjct: 1247 KAKRLQEAEAEKFKIPQVSPLKPFSFPSMFSYNSPALLQY----SPEAQL 1292


>gi|432903781|ref|XP_004077224.1| PREDICTED: homeobox protein MSH-C [Oryzias latipes]
          Length = 241

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 83/127 (65%), Positives = 93/127 (73%), Gaps = 6/127 (4%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
            NLRKHK NRKPRTPFTT QLLSLE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 114 CNLRKHKNNRKPRTPFTTSQLLSLERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 173

Query: 93  RAKAKRLQEAEIEKIKMSAI----AAARPHPLYGPGPSPHLHQYFQHASPEALLHHPHPF 148
           RAKAKRLQEAE+EK+K++A     A A P PL     +P L  Y   + P   L  P  F
Sbjct: 174 RAKAKRLQEAELEKLKLAAKPLLPAFAFPLPLSASMGAPAL--YGALSGPRPALPVPGLF 231

Query: 149 SALLGRH 155
           S   G +
Sbjct: 232 SGPYGMY 238


>gi|83318945|emb|CAJ38810.1| Msx protein [Platynereis dumerilii]
          Length = 389

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 77/102 (75%), Positives = 86/102 (84%), Gaps = 5/102 (4%)

Query: 15  LSSPLLSDS--NKGDP---PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIA 69
           L +P LS S    G P   P   V LRKHK NRKPRTPFTTQQLL+LE+KFR+KQYLSIA
Sbjct: 230 LGAPRLSTSPPRPGSPIRKPPTTVQLRKHKTNRKPRTPFTTQQLLALERKFRQKQYLSIA 289

Query: 70  ERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSA 111
           ERAEFS+SL+LTETQVKIWFQNRRAKAKRLQEAE+EK+KM+A
Sbjct: 290 ERAEFSASLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA 331


>gi|410901431|ref|XP_003964199.1| PREDICTED: homeobox protein MSH-C-like [Takifugu rubripes]
          Length = 253

 Score =  146 bits (368), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 79/111 (71%), Positives = 89/111 (80%), Gaps = 8/111 (7%)

Query: 28  PPKL----NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTET 83
           PP+L      NLRKHK NRKPRTPFTT QLLSLE+KFR+KQYLSIAERAEFS+SL LTET
Sbjct: 117 PPRLPSPAACNLRKHKNNRKPRTPFTTSQLLSLERKFRQKQYLSIAERAEFSNSLSLTET 176

Query: 84  QVKIWFQNRRAKAKRLQEAEIEKIKMSAI----AAARPHPLYGPGPSPHLH 130
           QVKIWFQNRRAKAKRLQEAE+EK+K++A     A A P PL  P  +P L+
Sbjct: 177 QVKIWFQNRRAKAKRLQEAEMEKLKLAAKPLLPAFAFPFPLNAPMAAPVLY 227


>gi|2506530|sp|Q03357.2|MSXA_DANRE RecName: Full=Homeobox protein MSH-A
 gi|608509|gb|AAA99705.1| homeodomain protein [Danio rerio]
          Length = 257

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 105/165 (63%), Gaps = 18/165 (10%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           ++ P LS S +   P +   LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEF
Sbjct: 97  INKPRLSTSPRSQSPTI-CPLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEF 155

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQ 134
           SSSL LTETQVKIWFQNRRAKAKRLQEAE+E+ KM++       P+  PG +        
Sbjct: 156 SSSLSLTETQVKIWFQNRRAKAKRLQEAELERFKMAS------KPILHPGLTL------- 202

Query: 135 HASPEALLHHPHPFSALLGR-HPAMAHFMPAAPMPQNSPPGGSDM 178
              P  L   P   + + G+  P   H +P AP+   S P G  M
Sbjct: 203 ---PFPLCTQPQTAALVCGQSFPFSRHMLPFAPIGIYSTPMGYSM 244


>gi|71834676|ref|NP_001025440.1| homeobox protein MSH-A [Danio rerio]
 gi|66267632|gb|AAH95602.1| Muscle segment homeobox A [Danio rerio]
 gi|182889682|gb|AAI65506.1| Msxa protein [Danio rerio]
          Length = 257

 Score =  145 bits (366), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 87/165 (52%), Positives = 105/165 (63%), Gaps = 18/165 (10%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           ++ P LS S +   P +   LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEF
Sbjct: 97  INKPRLSTSPRSQSPTI-CPLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEF 155

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQ 134
           SSSL LTETQVKIWFQNRRAKAKRLQEAE+E+ KM++       P+  PG +        
Sbjct: 156 SSSLSLTETQVKIWFQNRRAKAKRLQEAELERFKMAS------KPILHPGLTL------- 202

Query: 135 HASPEALLHHPHPFSALLGR-HPAMAHFMPAAPMPQNSPPGGSDM 178
              P  L   P   + + G+  P   H +P AP+   S P G  M
Sbjct: 203 ---PFPLCTQPQTAALVCGQSFPFSRHMLPFAPIGIYSTPMGYSM 244


>gi|86515336|ref|NP_001034495.1| muscle segment homeodomain protein [Tribolium castaneum]
 gi|56684554|gb|AAW21975.1| muscle segment homeodomain protein [Tribolium castaneum]
          Length = 232

 Score =  145 bits (365), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 71/84 (84%), Positives = 78/84 (92%)

Query: 28  PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKI 87
           PP +   LRKHKPNRKPRTPFTTQQLL+LEKKFR+KQYLSIAERAEFSSSL LTE QVKI
Sbjct: 102 PPIVRCALRKHKPNRKPRTPFTTQQLLALEKKFRDKQYLSIAERAEFSSSLRLTEPQVKI 161

Query: 88  WFQNRRAKAKRLQEAEIEKIKMSA 111
           WFQNRRAKAKRLQEAE+EK+++SA
Sbjct: 162 WFQNRRAKAKRLQEAELEKLRLSA 185


>gi|547691|sp|P35993.1|HOX7P_XENLA RecName: Full=Homeobox protein XHOX-7.1'
 gi|64785|emb|CAA41573.1| homeobox containing peptide Hhox7.1' [Xenopus laevis]
          Length = 291

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 76/80 (95%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
           +  LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 151 SCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 210

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAEIEK+KM+A
Sbjct: 211 RRAKAKRLQEAEIEKLKMAA 230


>gi|39850042|gb|AAH64202.1| msx2 protein [Xenopus (Silurana) tropicalis]
          Length = 283

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 149 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 208

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAEIEK+KM+A
Sbjct: 209 RRAKAKRLQEAEIEKLKMAA 228


>gi|195341213|ref|XP_002037205.1| GM12794 [Drosophila sechellia]
 gi|194131321|gb|EDW53364.1| GM12794 [Drosophila sechellia]
          Length = 533

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/80 (87%), Positives = 74/80 (92%), Gaps = 2/80 (2%)

Query: 21  SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
            D+N  +PP++  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL L
Sbjct: 390 GDAN--EPPRIKCNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRL 447

Query: 81  TETQVKIWFQNRRAKAKRLQ 100
           TETQVKIWFQNRRAKAKRLQ
Sbjct: 448 TETQVKIWFQNRRAKAKRLQ 467


>gi|260825959|ref|XP_002607933.1| muscle segment homeobox [Branchiostoma floridae]
 gi|4006936|emb|CAA10201.1| Msx protein [Branchiostoma floridae]
 gi|229293283|gb|EEN63943.1| muscle segment homeobox [Branchiostoma floridae]
          Length = 275

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 73/100 (73%), Positives = 82/100 (82%), Gaps = 6/100 (6%)

Query: 18  PLLSDSNKGDPPKL------NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAER 71
           P L  S    PP+          LRKHK NRKPRTPFTTQQLL+LE+KFR+KQYLSIAER
Sbjct: 123 PWLQSSRYSPPPRDRLPTPNKCTLRKHKTNRKPRTPFTTQQLLALERKFRQKQYLSIAER 182

Query: 72  AEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSA 111
           AEFS+SL+LTETQVKIWFQNRRAKAKRLQEAE+EK+KM+A
Sbjct: 183 AEFSASLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA 222


>gi|317419111|emb|CBN81149.1| Msx1 protein [Dicentrarchus labrax]
          Length = 283

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 81/133 (60%), Positives = 93/133 (69%), Gaps = 18/133 (13%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRA
Sbjct: 154 LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRA 213

Query: 95  KAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHHPHPFSALLGR 154
           KAKRLQEAE+EK+KM+A               P L   F  + P    H P  ++   G 
Sbjct: 214 KAKRLQEAELEKLKMAA--------------KPMLPPAFGISFPLG-AHVPASYA---GS 255

Query: 155 HPAMAHFMPAAPM 167
           HP   H +P +PM
Sbjct: 256 HPFQRHSLPVSPM 268


>gi|259013392|ref|NP_001158403.1| msh homeobox [Saccoglossus kowalevskii]
 gi|90660010|gb|ABD97280.1| Msx [Saccoglossus kowalevskii]
          Length = 301

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 70/84 (83%), Positives = 79/84 (94%), Gaps = 1/84 (1%)

Query: 28  PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKI 87
           PPK+   LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKI
Sbjct: 165 PPKV-CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKI 223

Query: 88  WFQNRRAKAKRLQEAEIEKIKMSA 111
           WFQNRRAKAKRLQEAE+EK+KM+A
Sbjct: 224 WFQNRRAKAKRLQEAELEKLKMAA 247


>gi|49170108|ref|NP_990819.1| homeobox protein MSX-1 [Gallus gallus]
 gi|1708273|sp|P50223.1|HMGX7_CHICK RecName: Full=Homeobox protein GHOX-7; AltName: Full=CHOX-7;
           Short=Hox-7
 gi|464147|dbj|BAA01209.1| Chox-7 protein [Gallus gallus]
          Length = 288

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 153 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 212

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 213 RAKAKRLQEAELEKLKMAA 231


>gi|443686534|gb|ELT89775.1| hypothetical protein CAPTEDRAFT_176625 [Capitella teleta]
          Length = 274

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 74/95 (77%), Positives = 82/95 (86%), Gaps = 6/95 (6%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTTQQLL+LE+KFREKQYLSIAERAEFS+SL+LTETQVKIWFQN
Sbjct: 154 TCQLRKHKANRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSTSLNLTETQVKIWFQN 213

Query: 92  RRAKAKRLQEAEIEKIKMSAIAAARPH--PLYGPG 124
           RRAK+KRLQEAE+EKIKM    A+RP   P +G G
Sbjct: 214 RRAKSKRLQEAELEKIKM----ASRPLLPPAFGIG 244


>gi|110659564|dbj|BAE98268.1| msh homeobox 1-like protein [Okamejei kenojei]
          Length = 83

 Score =  144 bits (362), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 75/79 (94%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 2   CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 61

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 62  RAKAKRLQEAELEKLKMAA 80


>gi|432859725|ref|XP_004069233.1| PREDICTED: homeobox protein XHOX-7.1-like [Oryzias latipes]
          Length = 275

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 75/77 (97%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRA
Sbjct: 146 LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRA 205

Query: 95  KAKRLQEAEIEKIKMSA 111
           KAKRLQEAE+EK+KM+A
Sbjct: 206 KAKRLQEAELEKLKMAA 222


>gi|431897239|gb|ELK06501.1| Homeobox protein MSX-1 [Pteropus alecto]
          Length = 303

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 164 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 223

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 224 RAKAKRLQEAELEKLKMAA 242


>gi|402868918|ref|XP_003898528.1| PREDICTED: homeobox protein MSX-1 [Papio anubis]
          Length = 291

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 72/93 (77%), Positives = 79/93 (84%), Gaps = 2/93 (2%)

Query: 19  LLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL 78
           L   S +  PP     LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL
Sbjct: 140 LFRPSGRLSPPA--CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSL 197

Query: 79  HLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSA 111
            LTETQVKIWFQNRRAKAKRLQEAE+EK+KM+A
Sbjct: 198 SLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA 230


>gi|301614558|ref|XP_002936749.1| PREDICTED: homeobox protein XHOX-7.1' [Xenopus (Silurana)
           tropicalis]
          Length = 256

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 69/80 (86%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 122 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 181

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAEIEK+KM+A
Sbjct: 182 RRAKAKRLQEAEIEKLKMAA 201


>gi|296486341|tpg|DAA28454.1| TPA: homeobox protein MSX-1 [Bos taurus]
          Length = 297

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|126331933|ref|XP_001364443.1| PREDICTED: homeobox protein MSX-1-like [Monodelphis domestica]
          Length = 314

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 177 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 236

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 237 RAKAKRLQEAELEKLKMAA 255


>gi|410920315|ref|XP_003973629.1| PREDICTED: homeobox protein XHOX-7.1-like [Takifugu rubripes]
          Length = 283

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 75/77 (97%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRA
Sbjct: 154 LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRA 213

Query: 95  KAKRLQEAEIEKIKMSA 111
           KAKRLQEAE+EK+KM+A
Sbjct: 214 KAKRLQEAELEKLKMAA 230


>gi|317419112|emb|CBN81150.1| Msx1 protein [Dicentrarchus labrax]
          Length = 263

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 81/133 (60%), Positives = 93/133 (69%), Gaps = 18/133 (13%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRA
Sbjct: 134 LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRA 193

Query: 95  KAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHHPHPFSALLGR 154
           KAKRLQEAE+EK+KM+A               P L   F  + P    H P  ++   G 
Sbjct: 194 KAKRLQEAELEKLKMAA--------------KPMLPPAFGISFPLG-AHVPASYA---GS 235

Query: 155 HPAMAHFMPAAPM 167
           HP   H +P +PM
Sbjct: 236 HPFQRHSLPVSPM 248


>gi|149636809|ref|XP_001507596.1| PREDICTED: homeobox protein MSX-1-like [Ornithorhynchus anatinus]
          Length = 304

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 163 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 222

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 223 RAKAKRLQEAELEKLKMAA 241


>gi|111305216|gb|AAI20209.1| MSX1 protein [Bos taurus]
 gi|440908136|gb|ELR58192.1| Homeobox protein MSX-1 [Bos grunniens mutus]
          Length = 303

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 164 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 223

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 224 RAKAKRLQEAELEKLKMAA 242


>gi|410914738|ref|XP_003970844.1| PREDICTED: homeobox protein MSH-D-like [Takifugu rubripes]
          Length = 276

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 75/79 (94%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL LTETQVKIWFQNRRA
Sbjct: 133 LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSTSLTLTETQVKIWFQNRRA 192

Query: 95  KAKRLQEAEIEKIKMSAIA 113
           KAKRLQEAE+EK+KM+A A
Sbjct: 193 KAKRLQEAELEKLKMAADA 211


>gi|110659562|dbj|BAE98267.1| msh homeobox 1-like protein [Scyliorhinus torazame]
          Length = 282

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 75/79 (94%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 149 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 208

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 209 RAKAKRLQEAELEKLKMAA 227


>gi|410932421|ref|XP_003979592.1| PREDICTED: homeobox protein XHOX-7.1-like [Takifugu rubripes]
          Length = 283

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 75/77 (97%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRA
Sbjct: 154 LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRA 213

Query: 95  KAKRLQEAEIEKIKMSA 111
           KAKRLQEAE+EK+KM+A
Sbjct: 214 KAKRLQEAELEKLKMAA 230


>gi|158634542|gb|ABW76121.1| MsxA [Petromyzon marinus]
          Length = 318

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 67/81 (82%), Positives = 76/81 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK +RKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 184 CTLRKHKASRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQNR 243

Query: 93  RAKAKRLQEAEIEKIKMSAIA 113
           RAKAKRLQEAE+EK+KM+A A
Sbjct: 244 RAKAKRLQEAELEKLKMAAAA 264


>gi|426343704|ref|XP_004038429.1| PREDICTED: homeobox protein MSX-1 [Gorilla gorilla gorilla]
          Length = 303

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 164 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 223

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 224 RAKAKRLQEAELEKLKMAA 242


>gi|410949182|ref|XP_003981302.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein MSX-2 [Felis
           catus]
          Length = 389

 Score =  143 bits (361), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 255 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 314

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 315 RRAKAKRLQEAELEKLKMAA 334


>gi|38382942|gb|AAH62514.1| msx1 protein [Xenopus (Silurana) tropicalis]
          Length = 296

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 75/79 (94%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 163 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 222

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 223 RAKAKRLQEAELEKLKMAA 241


>gi|402873463|ref|XP_003900594.1| PREDICTED: homeobox protein MSX-2 isoform 1 [Papio anubis]
 gi|402873465|ref|XP_003900595.1| PREDICTED: homeobox protein MSX-2 isoform 2 [Papio anubis]
          Length = 267

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|395817018|ref|XP_003781975.1| PREDICTED: homeobox protein MSX-2 [Otolemur garnettii]
          Length = 267

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|88913539|sp|Q2VL80.1|MSX1_PERPO RecName: Full=Homeobox protein MSX-1; AltName: Full=Msh homeobox
           1-like protein
 gi|71370467|gb|AAZ30451.1| msh homeobox 1-like protein [Perodicticus potto]
          Length = 297

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|57886|emb|CAA41944.1| Hox-7 protein [Mus musculus]
 gi|1245740|gb|AAB35456.1| Msx1=homeobox gene [mice, Peptide, 299 aa]
          Length = 299

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 164 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 223

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 224 RAKAKRLQEAELEKLKMAA 242


>gi|395855591|ref|XP_003800237.1| PREDICTED: homeobox protein MSX-1 [Otolemur garnettii]
          Length = 303

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 164 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 223

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 224 RAKAKRLQEAELEKLKMAA 242


>gi|444521882|gb|ELV13224.1| Homeobox protein MSX-1 [Tupaia chinensis]
          Length = 303

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 164 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 223

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 224 RAKAKRLQEAELEKLKMAA 242


>gi|148709179|gb|EDL41125.1| homeobox, msh-like 2 [Mus musculus]
          Length = 283

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 149 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 208

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 209 RRAKAKRLQEAELEKLKMAA 228


>gi|443686535|gb|ELT89776.1| hypothetical protein CAPTEDRAFT_87981, partial [Capitella teleta]
          Length = 94

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 77/79 (97%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
           V LRKHK NRKPRTPFTTQQLL+LE+KFREKQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 4   VLLRKHKTNRKPRTPFTTQQLLALERKFREKQYLSIAERAEFSTSLNLTETQVKIWFQNR 63

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAK+KRLQEAE+EK++M+A
Sbjct: 64  RAKSKRLQEAELEKLRMAA 82


>gi|396157|emb|CAA46671.1| Hox-7 [Gallus gallus]
          Length = 159

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 24  CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 83

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 84  RAKAKRLQEAELEKLKMAA 102


>gi|123309|sp|P23410.1|MSX2_COTJA RecName: Full=Homeobox protein MSX-2; AltName: Full=MSX-1; AltName:
           Full=QUOX-7
 gi|213620|gb|AAA63459.1| homeobox protein [Coturnix coturnix]
          Length = 259

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 69/81 (85%), Positives = 76/81 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 126 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 185

Query: 93  RAKAKRLQEAEIEKIKMSAIA 113
           RAKAKRLQEAE+EK+KM+A A
Sbjct: 186 RAKAKRLQEAELEKLKMAANA 206


>gi|354471879|ref|XP_003498168.1| PREDICTED: homeobox protein MSX-2-like [Cricetulus griseus]
 gi|344240408|gb|EGV96511.1| Homeobox protein MSX-2 [Cricetulus griseus]
          Length = 267

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 75/79 (94%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 134 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 193

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 194 RAKAKRLQEAELEKLKMAA 212


>gi|50978788|ref|NP_001003098.1| homeobox protein MSX-2 [Canis lupus familiaris]
 gi|42559526|sp|Q9GK08.1|MSX2_CANFA RecName: Full=Homeobox protein MSX-2; AltName: Full=Homeobox
           protein Hox-8
 gi|12049571|emb|CAC19897.1| muscle segmentation homologue (MSX2) [Canis lupus familiaris]
 gi|13811931|emb|CAC37368.1| muscle segmentation homologue (MSX2) [Canis lupus familiaris]
          Length = 267

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|88913542|sp|Q2VL86.1|MSX1_SAIBB RecName: Full=Homeobox protein MSX-1; AltName: Full=Msh homeobox
           1-like protein
 gi|71370505|gb|AAZ30467.1| msh homeobox 1-like protein [Saimiri boliviensis]
          Length = 297

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|163916244|gb|AAI57724.1| Unknown (protein for IMAGE:8318596) [Xenopus laevis]
          Length = 294

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 161 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 220

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK KM+A
Sbjct: 221 RAKAKRLQEAELEKFKMAA 239


>gi|56377796|dbj|BAD74122.1| homeobox-containing Msx1 homologue [Pelodiscus sinensis]
          Length = 236

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 101 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 160

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 161 RAKAKRLQEAELEKLKMAA 179


>gi|410958088|ref|XP_003985653.1| PREDICTED: homeobox protein MSX-1, partial [Felis catus]
          Length = 285

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 146 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 205

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 206 RAKAKRLQEAELEKLKMAA 224


>gi|116063519|gb|AAI23225.1| LOC100125666 protein [Xenopus laevis]
          Length = 293

 Score =  143 bits (360), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 160 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 219

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK KM+A
Sbjct: 220 RAKAKRLQEAELEKFKMAA 238


>gi|348508112|ref|XP_003441599.1| PREDICTED: homeobox protein XHOX-7.1-like [Oreochromis niloticus]
          Length = 283

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 75/77 (97%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRA
Sbjct: 154 LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRA 213

Query: 95  KAKRLQEAEIEKIKMSA 111
           KAKRLQEAE+EK+KM+A
Sbjct: 214 KAKRLQEAELEKLKMAA 230


>gi|88913541|sp|Q2VL82.1|MSX1_SAGOE RecName: Full=Homeobox protein MSX-1; AltName: Full=Msh homeobox
           1-like protein
 gi|71370521|gb|AAZ30471.1| msh homeobox 1-like protein [Saguinus oedipus]
          Length = 297

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|395505112|ref|XP_003756889.1| PREDICTED: homeobox protein MSX-2-like isoform 1 [Sarcophilus
           harrisii]
          Length = 262

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 128 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 187

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 188 RRAKAKRLQEAELEKLKMAA 207


>gi|297292274|ref|XP_001118871.2| PREDICTED: homeobox protein MSX-1-like [Macaca mulatta]
          Length = 530

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 391 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 450

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 451 RAKAKRLQEAELEKLKMAA 469


>gi|326928396|ref|XP_003210366.1| PREDICTED: homeobox protein MSX-2-like [Meleagris gallopavo]
          Length = 295

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 75/79 (94%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 162 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 221

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 222 RAKAKRLQEAELEKLKMAA 240


>gi|88913533|sp|Q2VL79.1|MSX1_DAUMA RecName: Full=Homeobox protein MSX-1; AltName: Full=Msh homeobox
           1-like protein
 gi|71370525|gb|AAZ30472.1| msh homeobox 1-like protein [Daubentonia madagascariensis]
          Length = 297

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|390461036|ref|XP_003732578.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein MSX-1-like
           [Callithrix jacchus]
          Length = 289

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 150 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 209

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 210 RAKAKRLQEAELEKLKMAA 228


>gi|431918166|gb|ELK17394.1| Homeobox protein MSX-2 [Pteropus alecto]
          Length = 267

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 75/79 (94%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 134 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 193

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 194 RAKAKRLQEAELEKLKMAA 212


>gi|82524647|ref|NP_001032329.1| msh homeobox 1 [Xenopus (Silurana) tropicalis]
 gi|89267424|emb|CAJ81598.1| msh homeo box homolog 1 (Drosophila) [Xenopus (Silurana)
           tropicalis]
 gi|213627003|gb|AAI70570.1| msh homeobox 1 [Xenopus (Silurana) tropicalis]
          Length = 275

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 75/79 (94%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 142 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 201

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 202 RAKAKRLQEAELEKLKMAA 220


>gi|301775837|ref|XP_002923339.1| PREDICTED: homeobox protein MSX-1-like [Ailuropoda melanoleuca]
          Length = 179

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 40  CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 99

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 100 RAKAKRLQEAELEKLKMAA 118


>gi|149726062|ref|XP_001502840.1| PREDICTED: homeobox protein MSX-2-like [Equus caballus]
          Length = 267

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|118582284|ref|NP_002439.2| homeobox protein MSX-1 [Homo sapiens]
 gi|305410868|ref|NP_001182191.1| homeobox protein MSX-1 [Pan troglodytes]
 gi|297673114|ref|XP_002814620.1| PREDICTED: homeobox protein MSX-1 [Pongo abelii]
 gi|119602826|gb|EAW82420.1| msh homeobox homolog 1 (Drosophila) [Homo sapiens]
 gi|133777015|gb|AAH21285.4| Msh homeobox 1 [Homo sapiens]
 gi|410215132|gb|JAA04785.1| msh homeobox 1 [Pan troglodytes]
 gi|410249520|gb|JAA12727.1| msh homeobox 1 [Pan troglodytes]
 gi|410302710|gb|JAA29955.1| msh homeobox 1 [Pan troglodytes]
 gi|410339013|gb|JAA38453.1| msh homeobox 1 [Pan troglodytes]
          Length = 303

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 164 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 223

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 224 RAKAKRLQEAELEKLKMAA 242


>gi|351715750|gb|EHB18669.1| Homeobox protein MSX-2 [Heterocephalus glaber]
          Length = 268

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|88913536|sp|Q2VL77.1|MSX1_LEPED RecName: Full=Homeobox protein MSX-1; AltName: Full=Msh homeobox
           1-like protein
 gi|71370533|gb|AAZ30474.1| msh homeobox 1-like protein [Lepilemur edwardsi]
          Length = 297

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|326919427|ref|XP_003205982.1| PREDICTED: homeobox protein GHOX-7-like, partial [Meleagris
           gallopavo]
 gi|63498|emb|CAA43924.1| HOX-7 [Gallus gallus]
 gi|228515|prf||1805245A Hox7 gene
          Length = 142

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 7   CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 66

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 67  RAKAKRLQEAELEKLKMAA 85


>gi|327265386|ref|XP_003217489.1| PREDICTED: homeobox protein MSX-2-like [Anolis carolinensis]
          Length = 269

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 75/79 (94%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 136 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 195

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 196 RAKAKRLQEAELEKLKMAA 214


>gi|444706676|gb|ELW48002.1| Homeobox protein MSX-2 [Tupaia chinensis]
          Length = 267

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|410252254|gb|JAA14094.1| msh homeobox 2 [Pan troglodytes]
 gi|410341133|gb|JAA39513.1| msh homeobox 2 [Pan troglodytes]
          Length = 267

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|113199783|ref|NP_034965.2| homeobox protein MSX-1 [Mus musculus]
 gi|11177822|gb|AAG32466.1| homeobox protein MSX1 variant [Mus musculus]
 gi|148705584|gb|EDL37531.1| mCG3750 [Mus musculus]
          Length = 303

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 164 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 223

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 224 RAKAKRLQEAELEKLKMAA 242


>gi|395543057|ref|XP_003773439.1| PREDICTED: homeobox protein MSX-1 [Sarcophilus harrisii]
          Length = 264

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 127 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 186

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 187 RAKAKRLQEAELEKLKMAA 205


>gi|332218760|ref|XP_003258528.1| PREDICTED: homeobox protein MSX-1 [Nomascus leucogenys]
          Length = 303

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 164 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 223

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 224 RAKAKRLQEAELEKLKMAA 242


>gi|149047351|gb|EDM00021.1| homeo box, msh-like 1, isoform CRA_b [Rattus norvegicus]
          Length = 303

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 164 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 223

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 224 RAKAKRLQEAELEKLKMAA 242


>gi|88913534|sp|Q2VL78.1|MSX1_LEMCA RecName: Full=Homeobox protein MSX-1; AltName: Full=Msh homeobox
           1-like protein
 gi|71370529|gb|AAZ30473.1| msh homeobox 1-like protein [Lemur catta]
          Length = 297

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|348574983|ref|XP_003473269.1| PREDICTED: homeobox protein MSX-2-like [Cavia porcellus]
          Length = 267

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|126290884|ref|XP_001370688.1| PREDICTED: homeobox protein MSX-2-like [Monodelphis domestica]
          Length = 268

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 134 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 193

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 194 RRAKAKRLQEAELEKLKMAA 213


>gi|403287046|ref|XP_003934772.1| PREDICTED: uncharacterized protein LOC101033508 [Saimiri
           boliviensis boliviensis]
          Length = 883

 Score =  142 bits (359), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 744 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 803

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 804 RAKAKRLQEAELEKLKMAA 822


>gi|47213989|emb|CAG01864.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 282

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 74/77 (96%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNRRA
Sbjct: 154 LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRA 213

Query: 95  KAKRLQEAEIEKIKMSA 111
           KAKRLQEAE+EK+KM+A
Sbjct: 214 KAKRLQEAELEKLKMAA 230


>gi|114326504|ref|NP_038629.2| homeobox protein MSX-2 [Mus musculus]
 gi|547660|sp|Q03358.2|MSX2_MOUSE RecName: Full=Homeobox protein MSX-2; AltName: Full=Homeobox
           protein Hox-8-1
 gi|193966|gb|AAA03477.1| homeobox protein [Mus musculus]
 gi|74203524|dbj|BAE20914.1| unnamed protein product [Mus musculus]
 gi|74228786|dbj|BAE21882.1| unnamed protein product [Mus musculus]
 gi|223461194|gb|AAI41133.1| Homeobox, msh-like 2 [Mus musculus]
          Length = 267

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|547690|sp|Q04281.1|HOX71_XENLA RecName: Full=Homeobox protein XHOX-7.1
 gi|64783|emb|CAA41574.1| homeobox containing peptide Xhox 7.1 [Xenopus laevis]
          Length = 295

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 75/77 (97%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRA
Sbjct: 164 LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRA 223

Query: 95  KAKRLQEAEIEKIKMSA 111
           KAKRLQEAE+EK+KM+A
Sbjct: 224 KAKRLQEAELEKLKMAA 240


>gi|301763116|ref|XP_002916975.1| PREDICTED: homeobox protein MSX-2-like [Ailuropoda melanoleuca]
 gi|281351248|gb|EFB26832.1| hypothetical protein PANDA_005126 [Ailuropoda melanoleuca]
          Length = 267

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|391358198|sp|P13297.3|MSX1_MOUSE RecName: Full=Homeobox protein MSX-1; AltName: Full=Homeobox
           protein Hox-7; AltName: Full=Hox-7.1; AltName: Full=Msh
           homeobox 1-like protein
 gi|16741155|gb|AAH16426.1| Msx1 protein [Mus musculus]
          Length = 297

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|119220590|ref|NP_037114.2| homeobox protein MSX-2 [Rattus norvegicus]
 gi|149039956|gb|EDL94072.1| rCG24176 [Rattus norvegicus]
          Length = 267

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|57888|emb|CAA41945.1| Hox-8 protein [Mus musculus]
          Length = 268

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 134 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 193

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 194 RRAKAKRLQEAELEKLKMAA 213


>gi|449273536|gb|EMC83030.1| Homeobox protein MSX-1, partial [Columba livia]
          Length = 168

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 43  CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 102

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 103 RAKAKRLQEAELEKLKMAA 121


>gi|184299|gb|AAA58665.1| HOX7 [Homo sapiens]
          Length = 297

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|51895955|gb|AAH81101.1| MSX1 protein, partial [Xenopus laevis]
          Length = 296

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 75/77 (97%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRA
Sbjct: 165 LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRA 224

Query: 95  KAKRLQEAEIEKIKMSA 111
           KAKRLQEAE+EK+KM+A
Sbjct: 225 KAKRLQEAELEKLKMAA 241


>gi|13592001|ref|NP_112321.1| homeobox protein MSX-1 [Rattus norvegicus]
 gi|1841390|dbj|BAA11750.1| Msx-1 protein [Rattus norvegicus]
          Length = 297

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|388490070|ref|NP_001253421.1| msh homeobox 2 [Macaca mulatta]
 gi|384941540|gb|AFI34375.1| homeobox protein MSX-2 [Macaca mulatta]
          Length = 267

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|27886557|ref|NP_002440.2| homeobox protein MSX-2 [Homo sapiens]
 gi|328927072|ref|NP_001129097.2| homeobox protein MSX-2 [Pan troglodytes]
 gi|397485868|ref|XP_003814060.1| PREDICTED: homeobox protein MSX-2-like [Pan paniscus]
 gi|426351068|ref|XP_004043080.1| PREDICTED: homeobox protein MSX-2 [Gorilla gorilla gorilla]
 gi|146325000|sp|A1YF16.1|MSX2_GORGO RecName: Full=Homeobox protein MSX-2
 gi|146325001|sp|A1YG93.1|MSX2_PANPA RecName: Full=Homeobox protein MSX-2
 gi|311033429|sp|P35548.3|MSX2_HUMAN RecName: Full=Homeobox protein MSX-2; AltName: Full=Homeobox
           protein Hox-8
 gi|120974784|gb|ABM46734.1| MSX2 [Gorilla gorilla]
 gi|121484000|gb|ABM54318.1| MSX2 [Pan paniscus]
          Length = 267

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|88913535|sp|Q2VL83.1|MSX1_LEORO RecName: Full=Homeobox protein MSX-1; AltName: Full=Msh homeobox
           1-like protein
 gi|71370517|gb|AAZ30470.1| msh homeobox 1-like protein [Leontopithecus rosalia]
          Length = 297

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|348557174|ref|XP_003464395.1| PREDICTED: homeobox protein MSX-1-like [Cavia porcellus]
          Length = 304

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 165 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 224

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 225 RAKAKRLQEAELEKLKMAA 243


>gi|345451236|gb|AEN94298.1| homeobox protein MSX-2 [Mus musculus]
          Length = 259

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|234375|gb|AAB19630.1| Xhox-7.1 [Xenopus laevis, Peptide, 294 aa]
          Length = 294

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 75/77 (97%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRA
Sbjct: 163 LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRA 222

Query: 95  KAKRLQEAEIEKIKMSA 111
           KAKRLQEAE+EK+KM+A
Sbjct: 223 KAKRLQEAELEKLKMAA 239


>gi|77748111|gb|AAI06247.1| MSX1 protein, partial [Xenopus laevis]
          Length = 298

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 75/77 (97%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRA
Sbjct: 167 LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRA 226

Query: 95  KAKRLQEAEIEKIKMSA 111
           KAKRLQEAE+EK+KM+A
Sbjct: 227 KAKRLQEAELEKLKMAA 243


>gi|8248642|gb|AAC60657.2| Hox8 [Mus sp.]
          Length = 267

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|88913531|sp|Q2VL85.1|MSX1_CALGO RecName: Full=Homeobox protein MSX-1; AltName: Full=Msh homeobox
           1-like protein
 gi|71370509|gb|AAZ30468.1| msh homeobox 1-like protein [Callimico goeldii]
          Length = 297

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|4261869|gb|AAD14169.1|S75308_1 Msx-2 homolog [Homo sapiens]
 gi|834012|gb|AAB33867.1| homeobox protein [Homo sapiens]
 gi|1321638|dbj|BAA06549.1| MSX-2 [Homo sapiens]
 gi|1722694|dbj|BAA13949.1| MSX-2 [Homo sapiens]
 gi|1758335|gb|AAB42178.1| homeobox at bp 393..572 [Homo sapiens]
 gi|15930143|gb|AAH15509.1| Msh homeobox 2 [Homo sapiens]
 gi|32879971|gb|AAP88816.1| msh homeo box homolog 2 (Drosophila) [Homo sapiens]
 gi|61360081|gb|AAX41808.1| msh homeobox-like 2 [synthetic construct]
 gi|61360089|gb|AAX41809.1| msh homeobox-like 2 [synthetic construct]
 gi|61360096|gb|AAX41810.1| msh homeobox-like 2 [synthetic construct]
 gi|61360103|gb|AAX41811.1| msh homeobox-like 2 [synthetic construct]
 gi|119581785|gb|EAW61381.1| msh homeobox homolog 2 (Drosophila), isoform CRA_a [Homo sapiens]
 gi|119581786|gb|EAW61382.1| msh homeobox homolog 2 (Drosophila), isoform CRA_a [Homo sapiens]
 gi|123981394|gb|ABM82526.1| msh homeobox homolog 2 (Drosophila) [synthetic construct]
 gi|123996239|gb|ABM85721.1| msh homeobox homolog 2 (Drosophila) [synthetic construct]
 gi|307684722|dbj|BAJ20401.1| msh homeobox 2 [synthetic construct]
          Length = 267

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|27807395|ref|NP_777223.1| homeobox protein MSX-1 [Bos taurus]
 gi|3023960|sp|O02786.1|MSX1_BOVIN RecName: Full=Homeobox protein MSX-1; AltName: Full=Msh homeobox
           1-like protein
 gi|2190055|dbj|BAA20367.1| Mxs-1 [Bos taurus]
          Length = 297

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|344279070|ref|XP_003411314.1| PREDICTED: homeobox protein MSX-1-like [Loxodonta africana]
          Length = 297

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|88913532|sp|Q2VL84.1|MSX1_CALJA RecName: Full=Homeobox protein MSX-1; AltName: Full=Msh homeobox
           1-like protein
 gi|71370513|gb|AAZ30469.1| msh homeobox 1-like protein [Callithrix jacchus]
          Length = 297

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|281341875|gb|EFB17459.1| hypothetical protein PANDA_012462 [Ailuropoda melanoleuca]
          Length = 187

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 48  CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 107

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 108 RAKAKRLQEAELEKLKMAA 126


>gi|332248293|ref|XP_003273299.1| PREDICTED: homeobox protein MSX-2 isoform 1 [Nomascus leucogenys]
          Length = 267

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|118601824|ref|NP_001073082.1| homeobox protein MSX-2 [Bos taurus]
 gi|122145323|sp|Q0P5C3.1|MSX2_BOVIN RecName: Full=Homeobox protein MSX-2
 gi|112362120|gb|AAI20249.1| Msh homeobox 2 [Bos taurus]
 gi|296475929|tpg|DAA18044.1| TPA: homeobox protein MSX-2 [Bos taurus]
 gi|440902722|gb|ELR53477.1| Homeobox protein MSX-2 [Bos grunniens mutus]
          Length = 267

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|88913540|sp|Q2VL76.1|MSX1_PROVC RecName: Full=Homeobox protein MSX-1; AltName: Full=Msh homeobox
           1-like protein
 gi|71370537|gb|AAZ30475.1| msh homeobox 1-like protein [Propithecus coquereli]
          Length = 297

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|51432|emb|CAA32871.1| unnamed protein product [Mus musculus]
 gi|9247217|gb|AAB31962.2| homeobox protein [Mus sp.]
          Length = 323

 Score =  142 bits (358), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|73951854|ref|XP_545946.2| PREDICTED: homeobox protein MSX-1 [Canis lupus familiaris]
          Length = 236

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 97  CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 156

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 157 RAKAKRLQEAELEKLKMAA 175


>gi|1709146|sp|P52953.1|MSX2_RAT RecName: Full=Homeobox protein MSX-2; AltName: Full=Homeobox
           protein Hox-8-1
 gi|529694|gb|AAA20669.1| MSX-2 [Rattus norvegicus]
          Length = 139

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 5   TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 64

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 65  RRAKAKRLQEAELEKLKMAA 84


>gi|395505114|ref|XP_003756890.1| PREDICTED: homeobox protein MSX-2-like isoform 2 [Sarcophilus
           harrisii]
          Length = 275

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 141 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 200

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 201 RRAKAKRLQEAELEKLKMAA 220


>gi|23503066|sp|P28360.2|MSX1_HUMAN RecName: Full=Homeobox protein MSX-1; AltName: Full=Homeobox
           protein Hox-7; AltName: Full=Msh homeobox 1-like protein
 gi|88913538|sp|Q2VL88.1|MSX1_PANTR RecName: Full=Homeobox protein MSX-1; AltName: Full=Msh homeobox
           1-like protein
 gi|184295|gb|AAA52683.1| homeobox protein [Homo sapiens]
 gi|16326739|gb|AAL17870.1| muscle segment homeobox 1 [Homo sapiens]
 gi|45595674|gb|AAH67353.1| MSX1 protein [Homo sapiens]
 gi|71370497|gb|AAZ30465.1| msh homeobox 1-like protein [Pan troglodytes verus]
 gi|208966794|dbj|BAG73411.1| msh homeobox 1 [synthetic construct]
          Length = 297

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|268370063|ref|NP_001098740.1| msh homeobox 1 [Xenopus laevis]
 gi|146327756|gb|AAI41725.1| LOC100125666 protein [Xenopus laevis]
          Length = 273

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 140 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 199

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK KM+A
Sbjct: 200 RAKAKRLQEAELEKFKMAA 218


>gi|46484687|gb|AAS98253.1| homeobox protein MSX2 [Eleutherodactylus coqui]
          Length = 258

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 73/104 (70%), Positives = 84/104 (80%), Gaps = 5/104 (4%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 124 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 183

Query: 92  RRAKAKRLQEAEIEKIKMSAI-----AAARPHPLYGPGPSPHLH 130
           RRAKAKRLQEAE+EK+KM+A        + P P+  P P+  L+
Sbjct: 184 RRAKAKRLQEAELEKLKMAAKPILPPGFSLPFPINSPIPAASLY 227


>gi|88913537|sp|Q2VL87.1|MSX1_MACMU RecName: Full=Homeobox protein MSX-1; AltName: Full=Msh homeobox
           1-like protein
 gi|71370501|gb|AAZ30466.1| msh homeobox 1-like protein [Macaca mulatta]
          Length = 297

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|224050123|ref|XP_002196215.1| PREDICTED: homeobox protein GHOX-7-like [Taeniopygia guttata]
          Length = 230

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 95  CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 154

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 155 RAKAKRLQEAELEKLKMAA 173


>gi|45383057|ref|NP_989890.1| homeobox protein MSX-2 [Gallus gallus]
 gi|1170325|sp|P28362.2|MSX2_CHICK RecName: Full=Homeobox protein MSX-2; AltName: Full=Homeobox
           protein Hox-8; Short=CHOX-8; Short=GHox-8
 gi|236952|gb|AAB20018.1| homeobox-containing Hox-8 [Gallus gallus]
          Length = 259

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 75/79 (94%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 126 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 185

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 186 RAKAKRLQEAELEKLKMAA 204


>gi|63616|emb|CAA44007.1| homeodomain protein [Gallus gallus]
          Length = 259

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 75/79 (94%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 126 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 185

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 186 RAKAKRLQEAELEKLKMAA 204


>gi|395505116|ref|XP_003756891.1| PREDICTED: homeobox protein MSX-2-like isoform 3 [Sarcophilus
           harrisii]
          Length = 262

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 128 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 187

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 188 RRAKAKRLQEAELEKLKMAA 207


>gi|354468499|ref|XP_003496690.1| PREDICTED: homeobox protein MSX-1-like [Cricetulus griseus]
          Length = 378

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 239 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 298

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 299 RAKAKRLQEAELEKLKMAA 317


>gi|344235519|gb|EGV91622.1| Homeobox protein MSX-1 [Cricetulus griseus]
          Length = 261

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 122 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 181

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 182 RAKAKRLQEAELEKLKMAA 200


>gi|1184163|gb|AAA87223.1| Msx homeobox, partial [Molgula oculata]
          Length = 199

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/95 (71%), Positives = 83/95 (87%), Gaps = 2/95 (2%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
           N +LRKHK NRKPRTPFTT QLLSLE+KF EKQYLSIAERA+FS+SL+L+ETQVKIWFQN
Sbjct: 4   NCHLRKHKANRKPRTPFTTHQLLSLERKFTEKQYLSIAERAQFSTSLNLSETQVKIWFQN 63

Query: 92  RRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPS 126
           RRAK+KR+QEA++E++K++A AA     + GP PS
Sbjct: 64  RRAKSKRMQEAQVEQVKLAAAAACV--GVNGPNPS 96


>gi|380797987|gb|AFE70869.1| homeobox protein MSX-2, partial [Macaca mulatta]
          Length = 197

 Score =  142 bits (358), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 63  TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 122

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 123 RRAKAKRLQEAELEKLKMAA 142


>gi|442569681|gb|AGC59681.1| MSX1 [Bos taurus]
          Length = 297

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKH+ NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 158 CTLRKHRTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|403290249|ref|XP_003936239.1| PREDICTED: homeobox protein MSX-2, partial [Saimiri boliviensis
           boliviensis]
          Length = 246

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 112 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 171

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 172 RRAKAKRLQEAELEKLKMAA 191


>gi|313506650|gb|ADR64840.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506652|gb|ADR64841.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506654|gb|ADR64842.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506656|gb|ADR64843.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506658|gb|ADR64844.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506660|gb|ADR64845.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506662|gb|ADR64846.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506664|gb|ADR64847.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506666|gb|ADR64848.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506668|gb|ADR64849.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506670|gb|ADR64850.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506672|gb|ADR64851.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506674|gb|ADR64852.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506676|gb|ADR64853.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506678|gb|ADR64854.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506680|gb|ADR64855.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506682|gb|ADR64856.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506684|gb|ADR64857.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506686|gb|ADR64858.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506688|gb|ADR64859.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506690|gb|ADR64860.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506692|gb|ADR64861.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506694|gb|ADR64862.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506696|gb|ADR64863.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506698|gb|ADR64864.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506700|gb|ADR64865.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506702|gb|ADR64866.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506704|gb|ADR64867.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506706|gb|ADR64868.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506708|gb|ADR64869.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506710|gb|ADR64870.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506712|gb|ADR64871.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506714|gb|ADR64872.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506716|gb|ADR64873.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506718|gb|ADR64874.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506720|gb|ADR64875.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506722|gb|ADR64876.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506724|gb|ADR64877.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506726|gb|ADR64878.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506728|gb|ADR64879.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506730|gb|ADR64880.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506732|gb|ADR64881.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506734|gb|ADR64882.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506736|gb|ADR64883.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506738|gb|ADR64884.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506740|gb|ADR64885.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506742|gb|ADR64886.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506744|gb|ADR64887.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506746|gb|ADR64888.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506748|gb|ADR64889.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506750|gb|ADR64890.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506752|gb|ADR64891.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506754|gb|ADR64892.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506756|gb|ADR64893.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506758|gb|ADR64894.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506760|gb|ADR64895.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506762|gb|ADR64896.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506764|gb|ADR64897.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506766|gb|ADR64898.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506768|gb|ADR64899.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506770|gb|ADR64900.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506772|gb|ADR64901.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506774|gb|ADR64902.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506776|gb|ADR64903.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506778|gb|ADR64904.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506780|gb|ADR64905.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506782|gb|ADR64906.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506784|gb|ADR64907.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506786|gb|ADR64908.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506788|gb|ADR64909.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506790|gb|ADR64910.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506792|gb|ADR64911.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506794|gb|ADR64912.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506796|gb|ADR64913.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506798|gb|ADR64914.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506800|gb|ADR64915.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506802|gb|ADR64916.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506804|gb|ADR64917.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506806|gb|ADR64918.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506808|gb|ADR64919.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506810|gb|ADR64920.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506812|gb|ADR64921.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506814|gb|ADR64922.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506816|gb|ADR64923.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506818|gb|ADR64924.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506820|gb|ADR64925.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506822|gb|ADR64926.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506824|gb|ADR64927.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506826|gb|ADR64928.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506828|gb|ADR64929.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506830|gb|ADR64930.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506832|gb|ADR64931.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506834|gb|ADR64932.1| homeobox protein MSX-1 [Homo sapiens]
 gi|313506836|gb|ADR64933.1| homeobox protein MSX-1 [Homo sapiens]
          Length = 146

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 7   CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 66

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 67  RAKAKRLQEAELEKLKMAA 85


>gi|268370021|ref|NP_001084367.1| homeobox protein XHOX-7.1 [Xenopus laevis]
          Length = 275

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 75/77 (97%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRA
Sbjct: 144 LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRA 203

Query: 95  KAKRLQEAEIEKIKMSA 111
           KAKRLQEAE+EK+KM+A
Sbjct: 204 KAKRLQEAELEKLKMAA 220


>gi|397491159|ref|XP_003816541.1| PREDICTED: homeobox protein MSX-1, partial [Pan paniscus]
          Length = 249

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 110 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 169

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 170 RAKAKRLQEAELEKLKMAA 188


>gi|37811652|gb|AAR03827.1| Msx-type homeobox protein [Trachemys scripta]
          Length = 83

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 75/79 (94%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQV+IWFQNR
Sbjct: 1   CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVEIWFQNR 60

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 61  RAKAKRLQEAELEKLKMAA 79


>gi|344265289|ref|XP_003404717.1| PREDICTED: homeobox protein MSX-2-like [Loxodonta africana]
          Length = 267

 Score =  142 bits (357), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|411117571|gb|AFW04255.1| Msx1 protein, partial [Herichthys carpintis]
 gi|411117573|gb|AFW04256.1| Msx1 protein, partial [Herichthys cyanoguttatus]
 gi|411117575|gb|AFW04257.1| Msx1 protein, partial [Herichthys deppii]
 gi|411117577|gb|AFW04258.1| Msx1 protein, partial [Herichthys tamasopoensis]
 gi|411117579|gb|AFW04259.1| Msx1 protein, partial [Herichthys minckleyi]
 gi|411117581|gb|AFW04260.1| Msx1 protein, partial [Herichthys minckleyi]
 gi|411117583|gb|AFW04261.1| Msx1 protein, partial [Herichthys minckleyi]
 gi|411117585|gb|AFW04262.1| Msx1 protein, partial [Herichthys minckleyi]
          Length = 243

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 75/77 (97%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRA
Sbjct: 134 LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRA 193

Query: 95  KAKRLQEAEIEKIKMSA 111
           KAKRLQEAE+EK+KM+A
Sbjct: 194 KAKRLQEAELEKLKMAA 210


>gi|291387848|ref|XP_002710436.1| PREDICTED: msh homeobox 1-like [Oryctolagus cuniculus]
          Length = 268

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 74/80 (92%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQN
Sbjct: 134 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQN 193

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 194 RRAKAKRLQEAELEKLKMAA 213


>gi|63500|emb|CAA44425.1| Hox-8 [Gallus gallus]
 gi|228516|prf||1805245B Hox8 gene
          Length = 140

 Score =  142 bits (357), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 75/79 (94%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 7   CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 66

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 67  RAKAKRLQEAELEKLKMAA 85


>gi|285931|dbj|BAA03611.1| HOX-8 protein [Homo sapiens]
          Length = 172

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 38  TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 97

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 98  RRAKAKRLQEAELEKLKMAA 117


>gi|48958355|dbj|BAD23951.1| homeobox-containing Msx2 [Pelodiscus sinensis]
          Length = 210

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 75/79 (94%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNR
Sbjct: 77  CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNR 136

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 137 RAKAKRLQEAELEKLKMAA 155


>gi|345322272|ref|XP_001512652.2| PREDICTED: homeobox protein MSX-2-like, partial [Ornithorhynchus
           anatinus]
          Length = 198

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 1   CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLCLTETQVKIWFQNR 60

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 61  RAKAKRLQEAELEKLKMAA 79


>gi|123308|sp|P28361.1|MSX1_CHICK RecName: Full=Homeobox protein MSX-1; AltName: Full=Homeobox
           protein Hox-7; Short=CHOX-7; AltName: Full=Msh homeobox
           1-like protein
          Length = 249

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 114 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 173

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 174 RAKAKRLQEAELEKLKMAA 192


>gi|28189825|dbj|BAC56527.1| similar to Homeobox protein MSX-1 [Bos taurus]
          Length = 95

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 3   CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 62

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 63  RAKAKRLQEAELEKLKMAA 81


>gi|348519054|ref|XP_003447046.1| PREDICTED: homeobox protein MSH-D-like [Oreochromis niloticus]
          Length = 277

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 72/77 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 134 CQLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLTLTETQVKIWFQNR 193

Query: 93  RAKAKRLQEAEIEKIKM 109
           RAKAKRLQEAE+EK+KM
Sbjct: 194 RAKAKRLQEAELEKLKM 210


>gi|426232295|ref|XP_004023230.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein MSX-1-like [Ovis
           aries]
          Length = 236

 Score =  141 bits (355), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 69/85 (81%), Positives = 75/85 (88%)

Query: 27  DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
            PP     LRKH PN KPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVK
Sbjct: 91  SPPACTPALRKHNPNPKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVK 150

Query: 87  IWFQNRRAKAKRLQEAEIEKIKMSA 111
           IWFQNRRAKAKRLQEAE+EK+KM+A
Sbjct: 151 IWFQNRRAKAKRLQEAELEKLKMAA 175


>gi|190336847|gb|AAI62290.1| Msxe protein [Danio rerio]
 gi|190338830|gb|AAI62283.1| Msxe protein [Danio rerio]
          Length = 233

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/121 (63%), Positives = 87/121 (71%), Gaps = 12/121 (9%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPF+T QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNRRA
Sbjct: 105 LRKHKTNRKPRTPFSTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRA 164

Query: 95  KAKRLQEAEIEKIKMSA-----------IAAARPHPLYGPGPSPHLHQYFQHASPEALLH 143
           KAKRLQEAE+EK+KM+A             A    P Y  G  P  H++  + SP  L  
Sbjct: 165 KAKRLQEAELEKLKMAAKPLLPPAFGISFPAGAHIPAYSAGSHP-FHRHSANVSPVGLYT 223

Query: 144 H 144
           H
Sbjct: 224 H 224


>gi|242253860|ref|NP_001156359.1| homeobox protein MSX-1 [Sus scrofa]
 gi|239937384|dbj|BAH79128.1| homeo box msh-like 1 protein [Sus scrofa]
          Length = 303

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 73/79 (92%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 164 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 223

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK KM+A
Sbjct: 224 RAKAKRLQEAELEKPKMAA 242


>gi|930148|emb|CAA32626.1| Hox-7 gene product (299 is 2nd base in codon) [Mus musculus]
          Length = 100

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 8   CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 67

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 68  RAKAKRLQEAELEKLKMAA 86


>gi|158936908|dbj|BAF91569.1| Msx protein [Corbicula fluminea]
          Length = 347

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 220 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKIWFQNR 279

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRL EAEIEK+KM+A
Sbjct: 280 RAKAKRLHEAEIEKLKMAA 298


>gi|126272376|ref|XP_001378128.1| PREDICTED: homeobox protein MSH-C-like [Monodelphis domestica]
          Length = 296

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 164 CTLRKHKNNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 223

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+K++A
Sbjct: 224 RAKAKRLQEAELEKLKLAA 242


>gi|18859043|ref|NP_571348.1| homeobox protein MSX-1 [Danio rerio]
 gi|1399517|gb|AAB03273.1| homeodomain protein MsxE [Danio rerio]
          Length = 233

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 77/121 (63%), Positives = 87/121 (71%), Gaps = 12/121 (9%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPF+T QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNRRA
Sbjct: 105 LRKHKTNRKPRTPFSTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRA 164

Query: 95  KAKRLQEAEIEKIKMSA-----------IAAARPHPLYGPGPSPHLHQYFQHASPEALLH 143
           KAKRLQEAE+EK+KM+A             A    P Y  G  P  H++  + SP  L  
Sbjct: 165 KAKRLQEAELEKLKMAAKPLLPPAFGISFPAGAHIPAYSAGSHP-FHRHSANVSPVGLYT 223

Query: 144 H 144
           H
Sbjct: 224 H 224


>gi|405967970|gb|EKC33079.1| Homeobox protein XHOX-7.1 [Crassostrea gigas]
          Length = 331

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/118 (64%), Positives = 87/118 (73%), Gaps = 9/118 (7%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 141 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKIWFQNR 200

Query: 93  RAKAKRLQEAEIEKIKMSAIAAARPH--PLYGPGPSPHLHQYFQHASPEALLHHPHPF 148
           RAKAKRL EAE+EK+KM    A++P   P  G         Y Q+A P+     PH F
Sbjct: 201 RAKAKRLHEAELEKLKM----ASKPMLPPAIGVTFPAAAALYGQYARPQGF---PHSF 251


>gi|327278914|ref|XP_003224204.1| PREDICTED: homeobox protein MSX-1-like [Anolis carolinensis]
          Length = 338

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 72/77 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 197 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 256

Query: 93  RAKAKRLQEAEIEKIKM 109
           RAKAKRLQEAE+EK+KM
Sbjct: 257 RAKAKRLQEAELEKLKM 273


>gi|40809687|dbj|BAD07299.1| Msx2 protein [Ambystoma mexicanum]
          Length = 254

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/80 (82%), Positives = 74/80 (92%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL LTETQVKIWFQN
Sbjct: 121 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSNSLALTETQVKIWFQN 180

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEA++EK+KM+A
Sbjct: 181 RRAKAKRLQEADVEKLKMAA 200


>gi|47940016|gb|AAH71302.1| Muscle segment homeobox C [Danio rerio]
          Length = 274

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 83/107 (77%), Gaps = 13/107 (12%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 144 CTLRKHKNNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQNR 203

Query: 93  RAKAKRLQEAEIEKIKMSAI----AAARPH---------PLYGPGPS 126
           RAKAKRLQEAE+EK+K++      A A P          PLYGP  S
Sbjct: 204 RAKAKRLQEAELEKLKLATKPLLPAFAFPFPLGTHVGSPPLYGPSSS 250


>gi|24371278|ref|NP_571347.1| homeobox protein MSH-C [Danio rerio]
 gi|399912|sp|Q01703.1|MSXC_DANRE RecName: Full=Homeobox protein MSH-C
 gi|62543|emb|CAA46194.1| msh-C [Danio rerio]
          Length = 273

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 83/107 (77%), Gaps = 13/107 (12%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 143 CTLRKHKNNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQNR 202

Query: 93  RAKAKRLQEAEIEKIKMSAI----AAARPH---------PLYGPGPS 126
           RAKAKRLQEAE+EK+K++      A A P          PLYGP  S
Sbjct: 203 RAKAKRLQEAELEKLKLATKPLLPAFAFPFPLGTHVGSPPLYGPSSS 249


>gi|158254704|dbj|BAF83325.1| unnamed protein product [Homo sapiens]
          Length = 297

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQ+R
Sbjct: 158 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQSR 217

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 218 RAKAKRLQEAELEKLKMAA 236


>gi|42495382|gb|AAS17879.1| Msx1 protein [Ambystoma mexicanum]
          Length = 285

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 73/79 (92%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS SL LTETQVKIWFQNR
Sbjct: 152 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSGSLSLTETQVKIWFQNR 211

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 212 RAKAKRLQEAELEKLKMAA 230


>gi|355705328|gb|AES02280.1| msh homeobox 1 [Mustela putorius furo]
          Length = 148

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/77 (88%), Positives = 74/77 (96%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNRRA
Sbjct: 12  LRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRA 71

Query: 95  KAKRLQEAEIEKIKMSA 111
           KAKRLQEAE+EK+KM+A
Sbjct: 72  KAKRLQEAELEKLKMAA 88


>gi|355687158|gb|EHH25742.1| Msh homeobox 1-like protein, partial [Macaca mulatta]
          Length = 187

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 48  CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 107

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 108 RAKAKRLQEAELEKLKMAA 126


>gi|63101442|gb|AAH95601.1| Muscle segment homeobox E [Danio rerio]
          Length = 156

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 81/137 (59%), Positives = 93/137 (67%), Gaps = 14/137 (10%)

Query: 19  LLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL 78
           +L  S +  PP     LRKHK NRKPRTPF+T QLL+LE+KFR+KQYLSIAERAEFSSSL
Sbjct: 14  VLLTSGRLSPPA--CPLRKHKTNRKPRTPFSTAQLLALERKFRQKQYLSIAERAEFSSSL 71

Query: 79  HLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSA-----------IAAARPHPLYGPGPSP 127
            LTETQVKIWFQNRRAKAKRLQEAE+EK+KM+A             A    P Y  G  P
Sbjct: 72  SLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAKPLLPPAFGISFPAGAHIPAYSAGSHP 131

Query: 128 HLHQYFQHASPEALLHH 144
             H++  + SP  L  H
Sbjct: 132 -FHRHSANVSPVGLYTH 147


>gi|5532845|gb|AAD44907.1| Msx-type homeobox protein [Chelydra serpentina]
 gi|6653195|gb|AAF22638.1| Msx-type homeobox protein [Scyliorhinus retifer]
          Length = 76

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/76 (88%), Positives = 73/76 (96%)

Query: 36  RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
           RKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNRRAK
Sbjct: 1   RKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAK 60

Query: 96  AKRLQEAEIEKIKMSA 111
           AKRLQEAE+EK+KM+A
Sbjct: 61  AKRLQEAELEKLKMAA 76


>gi|47214756|emb|CAG01291.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 270

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 66/79 (83%), Positives = 76/79 (96%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
            NLRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 141 CNLRKHKNNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQNR 200

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+K+++
Sbjct: 201 RAKAKRLQEAELEKLKLAS 219


>gi|211892|gb|AAA48808.1| Hbox 7 [Gallus gallus]
          Length = 242

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 114 CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 173

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 174 RAKAKRLQEAELEKLKMAA 192


>gi|355749157|gb|EHH53556.1| Msh homeobox 1-like protein, partial [Macaca fascicularis]
          Length = 187

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/79 (86%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 48  CTLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 107

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 108 RAKAKRLQEAELEKLKMAA 126


>gi|399913|sp|Q01704.1|MSXD_DANRE RecName: Full=Homeobox protein MSH-D
 gi|62545|emb|CAA46195.1| msh-D [Danio rerio]
          Length = 226

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 69/84 (82%), Positives = 77/84 (91%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNRRA
Sbjct: 94  LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLTLTETQVKIWFQNRRA 153

Query: 95  KAKRLQEAEIEKIKMSAIAAARPH 118
           KAKRLQEAE+EK+K++A  A  P+
Sbjct: 154 KAKRLQEAELEKLKLTAKPALHPN 177


>gi|1139527|dbj|BAA11574.1| Msx1 protein [Ambystoma mexicanum]
          Length = 229

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 73/79 (92%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS SL LTETQVKIWFQNR
Sbjct: 96  CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSGSLSLTETQVKIWFQNR 155

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 156 RAKAKRLQEAELEKLKMAA 174


>gi|268577461|ref|XP_002643713.1| C. briggsae CBR-VAB-15 protein [Caenorhabditis briggsae]
 gi|75006361|sp|Q623D4.1|VAB15_CAEBR RecName: Full=Homeobox protein vab-15; AltName: Full=Variable
           abnormal morphology protein 15
          Length = 226

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 68/98 (69%), Positives = 81/98 (82%), Gaps = 5/98 (5%)

Query: 22  DSNKGDPPKLNVNL-----RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
           DS   D  K+ + L     RKHK NRKPRTPF+TQQL+SLE+KF+ KQYLSIAERAEFS+
Sbjct: 111 DSPTSDDAKIQIGLTKCMLRKHKNNRKPRTPFSTQQLISLERKFQSKQYLSIAERAEFSA 170

Query: 77  SLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAA 114
           SL LTETQVKIWFQNRRAK+KRLQEAE+EK+K + ++A
Sbjct: 171 SLQLTETQVKIWFQNRRAKSKRLQEAEVEKVKFAQVSA 208


>gi|410917085|ref|XP_003972017.1| PREDICTED: homeobox protein MSH-C-like [Takifugu rubripes]
          Length = 270

 Score =  140 bits (352), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 66/79 (83%), Positives = 76/79 (96%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
            NLRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 141 CNLRKHKNNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQNR 200

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+K+++
Sbjct: 201 RAKAKRLQEAELEKLKLAS 219


>gi|395501209|ref|XP_003754990.1| PREDICTED: homeobox protein MSH-C-like [Sarcophilus harrisii]
          Length = 171

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/79 (84%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 39  CTLRKHKNNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 98

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+K++A
Sbjct: 99  RAKAKRLQEAELEKLKLAA 117


>gi|396174|emb|CAA49156.1| transcription factor [Homo sapiens]
          Length = 267

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/80 (83%), Positives = 74/80 (92%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           R AKAKRLQEAE+EK+KM+A
Sbjct: 193 RSAKAKRLQEAELEKLKMAA 212


>gi|410933001|ref|XP_003979881.1| PREDICTED: homeobox protein MSH-C-like, partial [Takifugu rubripes]
          Length = 228

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 66/80 (82%), Positives = 76/80 (95%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
             NLRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQN
Sbjct: 98  QCNLRKHKNNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQN 157

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+K+++
Sbjct: 158 RRAKAKRLQEAELEKLKLAS 177


>gi|344296011|ref|XP_003419703.1| PREDICTED: homeobox protein MSX-3-like [Loxodonta africana]
          Length = 211

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 67/77 (87%), Positives = 74/77 (96%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNRRA
Sbjct: 84  LRKHKSNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLRLTETQVKIWFQNRRA 143

Query: 95  KAKRLQEAEIEKIKMSA 111
           KAKRLQEAE+EK+K++A
Sbjct: 144 KAKRLQEAELEKLKLAA 160


>gi|431908185|gb|ELK11785.1| Homeobox protein MSX-3 [Pteropus alecto]
          Length = 208

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 82/102 (80%), Gaps = 9/102 (8%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 79  CTLRKHKNNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 138

Query: 93  RAKAKRLQEAEIEKIKMSAI----AAARPHPLYGPGPSPHLH 130
           RAKAKRLQEAE+EK+K++A     A A P PL       HLH
Sbjct: 139 RAKAKRLQEAELEKLKLTAKPLLPAFALPLPL-----GAHLH 175


>gi|432115365|gb|ELK36782.1| Homeobox protein MSH-C [Myotis davidii]
          Length = 141

 Score =  139 bits (351), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 72/92 (78%), Positives = 78/92 (84%), Gaps = 4/92 (4%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 12  CTLRKHKNNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 71

Query: 93  RAKAKRLQEAEIEKIKMSAI----AAARPHPL 120
           RAKAKRLQEAE+EK+K+ A     A A P PL
Sbjct: 72  RAKAKRLQEAELEKLKLEAKPLLPAFALPFPL 103


>gi|432895829|ref|XP_004076182.1| PREDICTED: homeobox protein MSH-D-like [Oryzias latipes]
          Length = 283

 Score =  139 bits (350), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 66/78 (84%), Positives = 72/78 (92%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQN
Sbjct: 133 GCQLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLTLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKM 109
           RRAKAKRLQEAE+EK+K+
Sbjct: 193 RRAKAKRLQEAELEKLKI 210


>gi|307214835|gb|EFN89715.1| Homeobox protein XHOX-7.1 [Harpegnathos saltator]
          Length = 127

 Score =  139 bits (350), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 72/88 (81%), Positives = 78/88 (88%), Gaps = 6/88 (6%)

Query: 39  KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           KPNRKPRTPFTT QLLSLEKKFREKQYL+IAERAEFS+SL LTETQVKIWFQNRRAKAKR
Sbjct: 1   KPNRKPRTPFTTSQLLSLEKKFREKQYLTIAERAEFSNSLQLTETQVKIWFQNRRAKAKR 60

Query: 99  LQEAEIEKIKMSAIAAARP--HPLYGPG 124
           LQEAEIEK+++S    ARP  HP +G G
Sbjct: 61  LQEAEIEKLRLS----ARPLLHPSFGSG 84


>gi|65301422|ref|NP_571335.1| homeobox protein MSH-B [Danio rerio]
 gi|59799848|sp|Q03356.3|MSXB_DANRE RecName: Full=Homeobox protein MSH-B
 gi|63102159|gb|AAH95311.1| Muscle segment homeobox B [Danio rerio]
 gi|182889680|gb|AAI65505.1| Msxb protein [Danio rerio]
          Length = 257

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 70/101 (69%), Positives = 78/101 (77%), Gaps = 10/101 (9%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPF+T QLLSLE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 131 CTLRKHKTNRKPRTPFSTSQLLSLERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQNR 190

Query: 93  RAKAKRLQEAEIEKIKMSA----------IAAARPHPLYGP 123
           RAKAKRLQEAE+EK K ++               P  LYGP
Sbjct: 191 RAKAKRLQEAELEKFKCASKPLLAPFALPFPLGSPSSLYGP 231


>gi|565628|emb|CAA57791.1| Msx-1 [Notophthalmus viridescens]
 gi|1095176|prf||2107332A Msx-1 gene
          Length = 280

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 66/79 (83%), Positives = 72/79 (91%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS SL  TETQVKIWFQNR
Sbjct: 147 CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSGSLSFTETQVKIWFQNR 206

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 207 RAKAKRLQEAELEKLKMAA 225


>gi|608511|gb|AAA99706.1| homeodomain protein, partial [Danio rerio]
          Length = 253

 Score =  139 bits (349), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 70/101 (69%), Positives = 78/101 (77%), Gaps = 10/101 (9%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPF+T QLLSLE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 127 CTLRKHKTNRKPRTPFSTSQLLSLERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQNR 186

Query: 93  RAKAKRLQEAEIEKIKMSA----------IAAARPHPLYGP 123
           RAKAKRLQEAE+EK K ++               P  LYGP
Sbjct: 187 RAKAKRLQEAELEKFKCASKPLLAPFALPFPLGSPSSLYGP 227


>gi|432950179|ref|XP_004084420.1| PREDICTED: homeobox protein MSH-C-like [Oryzias latipes]
          Length = 248

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 78/93 (83%), Gaps = 4/93 (4%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQN
Sbjct: 118 QCTLRKHKNNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQN 177

Query: 92  RRAKAKRLQEAEIEKIKMSAI----AAARPHPL 120
           RRAKAKRLQEAE+EK K+++     A A P PL
Sbjct: 178 RRAKAKRLQEAELEKFKLASKPVLPAFALPFPL 210


>gi|34577040|gb|AAO06122.1| MsxC homeobox protein [Xiphophorus hellerii]
          Length = 211

 Score =  139 bits (349), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 79/92 (85%), Gaps = 4/92 (4%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 89  CTLRKHKNNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQNR 148

Query: 93  RAKAKRLQEAEIEKIKMSAI----AAARPHPL 120
           RAKAKRLQEAE+EK K+++     A A P PL
Sbjct: 149 RAKAKRLQEAELEKFKLASKPVLPAFALPFPL 180


>gi|149061457|gb|EDM11880.1| rCG48500, isoform CRA_a [Rattus norvegicus]
          Length = 228

 Score =  138 bits (348), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 66/79 (83%), Positives = 73/79 (92%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KF +KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 103 CTLRKHKTNRKPRTPFTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 162

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+K++A
Sbjct: 163 RAKAKRLQEAELEKLKLTA 181


>gi|282154797|ref|NP_446164.1| homeo box, msh-like 3 [Rattus norvegicus]
 gi|149061458|gb|EDM11881.1| rCG48500, isoform CRA_b [Rattus norvegicus]
          Length = 204

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 78/92 (84%), Gaps = 5/92 (5%)

Query: 34  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
            LRKHK NRKPRTPFTT QLL+LE+KF +KQYLSIAERAEFSSSL LTETQVKIWFQNRR
Sbjct: 80  TLRKHKTNRKPRTPFTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNRR 139

Query: 94  AKAKRLQEAEIEKIKMSA-----IAAARPHPL 120
           AKAKRLQEAE+EK+K++A      A A P PL
Sbjct: 140 AKAKRLQEAELEKLKLTAKPLLPAAFALPFPL 171


>gi|6754756|ref|NP_034966.1| homeobox protein MSX-3 [Mus musculus]
 gi|2495284|sp|P70354.1|MSX3_MOUSE RecName: Full=Homeobox protein MSX-3
 gi|1470111|gb|AAB49935.1| similar to the Drosophila melanogaster muscle segment homeobox
           (msh) protein encoded by GenBank Accession Number U33319
           [Mus musculus]
 gi|3094003|gb|AAC15459.1| homeobox protein MSX3 [Mus musculus]
 gi|148685945|gb|EDL17892.1| homeobox, msh-like 3, isoform CRA_a [Mus musculus]
 gi|187950709|gb|AAI37579.1| Msx3 protein [Mus musculus]
 gi|187953603|gb|AAI37578.1| Msx3 protein [Mus musculus]
          Length = 204

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/92 (77%), Positives = 78/92 (84%), Gaps = 5/92 (5%)

Query: 34  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
            LRKHK NRKPRTPFTT QLL+LE+KF +KQYLSIAERAEFSSSL LTETQVKIWFQNRR
Sbjct: 80  TLRKHKTNRKPRTPFTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNRR 139

Query: 94  AKAKRLQEAEIEKIKMSA-----IAAARPHPL 120
           AKAKRLQEAE+EK+K++A      A A P PL
Sbjct: 140 AKAKRLQEAELEKLKLAAKPLLPAAFALPFPL 171


>gi|1304324|emb|CAA65367.1| Msx-3 [Mus musculus]
          Length = 132

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 71/93 (76%), Positives = 78/93 (83%), Gaps = 5/93 (5%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KF +KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 7   CTLRKHKTNRKPRTPFTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 66

Query: 93  RAKAKRLQEAEIEKIKMSA-----IAAARPHPL 120
           RAKAKRLQEAE+EK+K++A      A A P PL
Sbjct: 67  RAKAKRLQEAELEKLKLAAKPLLPAAFALPFPL 99


>gi|242002026|ref|XP_002435656.1| homeobox protein MSX-2, putative [Ixodes scapularis]
 gi|215498992|gb|EEC08486.1| homeobox protein MSX-2, putative [Ixodes scapularis]
          Length = 149

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 65/83 (78%), Positives = 75/83 (90%)

Query: 28  PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKI 87
           P  +   LR+HK NRKPRTPFTTQQLL+LE+KFR KQYLSIAERAEFSSSL+LTETQVKI
Sbjct: 2   PAAVKCQLRRHKSNRKPRTPFTTQQLLALERKFRIKQYLSIAERAEFSSSLNLTETQVKI 61

Query: 88  WFQNRRAKAKRLQEAEIEKIKMS 110
           WFQNRRAK KRL+EAE+EK++M+
Sbjct: 62  WFQNRRAKEKRLKEAELEKLRMA 84


>gi|47219263|emb|CAG11725.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 151

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 66/75 (88%), Positives = 72/75 (96%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL LTETQVKIWFQNRRA
Sbjct: 10  LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSTSLTLTETQVKIWFQNRRA 69

Query: 95  KAKRLQEAEIEKIKM 109
           KAKRLQEAE+EK+KM
Sbjct: 70  KAKRLQEAELEKLKM 84


>gi|30704771|gb|AAH51983.1| Msx3 protein [Mus musculus]
          Length = 223

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/78 (84%), Positives = 73/78 (93%)

Query: 34  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
            LRKHK NRKPRTPFTT QLL+LE+KF +KQYLSIAERAEFSSSL LTETQVKIWFQNRR
Sbjct: 99  TLRKHKTNRKPRTPFTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNRR 158

Query: 94  AKAKRLQEAEIEKIKMSA 111
           AKAKRLQEAE+EK+K++A
Sbjct: 159 AKAKRLQEAELEKLKLAA 176


>gi|146325002|sp|A2T764.1|MSX2_PANTR RecName: Full=Homeobox protein MSX-2
 gi|124111252|gb|ABM92019.1| MSX2 [Pan troglodytes]
          Length = 267

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/80 (82%), Positives = 73/80 (91%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPR  FTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKTNRKPRXXFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKRLQEAE+EK+KM+A
Sbjct: 193 RRAKAKRLQEAELEKLKMAA 212


>gi|348525062|ref|XP_003450041.1| PREDICTED: homeobox protein MSH-C-like [Oreochromis niloticus]
          Length = 331

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 70/92 (76%), Positives = 79/92 (85%), Gaps = 4/92 (4%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 202 CTLRKHKNNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQNR 261

Query: 93  RAKAKRLQEAEIEKIKMSAI----AAARPHPL 120
           RAKAKRLQEAE+EK K+++     A A P PL
Sbjct: 262 RAKAKRLQEAELEKFKLASKPVLPAFALPFPL 293


>gi|82697600|ref|NP_571351.2| homeobox protein MSH-D [Danio rerio]
 gi|81097659|gb|AAI09397.1| Muscle segment homeobox D [Danio rerio]
          Length = 226

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 69/84 (82%), Positives = 76/84 (90%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNRRA
Sbjct: 94  LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLTLTETQVKIWFQNRRA 153

Query: 95  KAKRLQEAEIEKIKMSAIAAARPH 118
           KAKRLQEAE+EK K++A  A  P+
Sbjct: 154 KAKRLQEAELEKPKLTAKPALHPN 177


>gi|168693291|dbj|BAG11598.1| Msx protein [Nematostella vectensis]
          Length = 269

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/79 (81%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 122 CQLRKHKANRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKIWFQNR 181

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRL EAE+EK+K+++
Sbjct: 182 RAKAKRLHEAELEKLKLAS 200


>gi|324524970|gb|ADY48490.1| Homeobox protein vab-15, partial [Ascaris suum]
          Length = 248

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 64/75 (85%), Positives = 72/75 (96%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPF+TQQLLSLE+KF++KQYLSIAERAEFS+SL LTETQVKIWFQNRRA
Sbjct: 147 LRKHKNNRKPRTPFSTQQLLSLERKFQQKQYLSIAERAEFSASLQLTETQVKIWFQNRRA 206

Query: 95  KAKRLQEAEIEKIKM 109
           K+KRLQEAE+EK+K 
Sbjct: 207 KSKRLQEAEVEKVKF 221


>gi|164510869|emb|CAL25146.1| msh1 protein [Schmidtea mediterranea]
          Length = 208

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 73/82 (89%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHKPNRKPRTPFTTQQL+ LEKKF +KQYLSIAERAEFSSSL LTE QVKIWFQNR
Sbjct: 97  CTLRKHKPNRKPRTPFTTQQLIQLEKKFHQKQYLSIAERAEFSSSLGLTEIQVKIWFQNR 156

Query: 93  RAKAKRLQEAEIEKIKMSAIAA 114
           RAK+KRLQEAEI+K+++   AA
Sbjct: 157 RAKSKRLQEAEIDKLRIDHTAA 178


>gi|117581728|gb|ABK41269.1| muscle segment homeobox 3 [Acropora millepora]
          Length = 257

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 67/85 (78%), Positives = 76/85 (89%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLLSLE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 109 CQLRKHKTNRKPRTPFTTSQLLSLERKFRQKQYLSIAERAEFSASLNLTETQVKIWFQNR 168

Query: 93  RAKAKRLQEAEIEKIKMSAIAAARP 117
           RAKAKRL EAE+EK+K+++  A  P
Sbjct: 169 RAKAKRLHEAELEKLKLASKPAYMP 193


>gi|168693295|dbj|BAG11600.1| Msx protein [Schmidtea mediterranea]
          Length = 206

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 73/82 (89%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHKPNRKPRTPFTTQQL+ LEKKF +KQYLSIAERAEFSSSL LTE QVKIWFQNR
Sbjct: 108 CTLRKHKPNRKPRTPFTTQQLIQLEKKFHQKQYLSIAERAEFSSSLGLTEIQVKIWFQNR 167

Query: 93  RAKAKRLQEAEIEKIKMSAIAA 114
           RAK+KRLQEAEI+K+++   AA
Sbjct: 168 RAKSKRLQEAEIDKLRIDHTAA 189


>gi|351698052|gb|EHB00971.1| Homeobox protein MSX-3 [Heterocephalus glaber]
          Length = 202

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 65/79 (82%), Positives = 73/79 (92%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KF +KQYLS+AERAEFSSSL LTETQVKIWFQNR
Sbjct: 79  CTLRKHKNNRKPRTPFTTAQLLALERKFHQKQYLSVAERAEFSSSLSLTETQVKIWFQNR 138

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+K++A
Sbjct: 139 RAKAKRLQEAELEKLKLAA 157


>gi|164510873|emb|CAL25148.1| msh1 protein [Dugesia japonica]
          Length = 221

 Score =  137 bits (345), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 66/82 (80%), Positives = 73/82 (89%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHKPNRKPRTPFTTQQL+ LEKKF +KQYLSIAERAEFSSSL LTE QVKIWFQNR
Sbjct: 96  CTLRKHKPNRKPRTPFTTQQLIQLEKKFHQKQYLSIAERAEFSSSLGLTEIQVKIWFQNR 155

Query: 93  RAKAKRLQEAEIEKIKMSAIAA 114
           RAK+KRLQEAEI+K+++   AA
Sbjct: 156 RAKSKRLQEAEIDKLRIDHTAA 177


>gi|306020801|gb|ADM79454.1| muscle segment homeobox [Glomeris marginata]
          Length = 301

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 67/81 (82%), Positives = 72/81 (88%), Gaps = 4/81 (4%)

Query: 26  GDPPKL----NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           G+PPK+       LRKHK NRKPRTPFTTQQLL+LE+KFR KQYLSIAERAEFSSSL+LT
Sbjct: 221 GEPPKMPAPMKCQLRKHKTNRKPRTPFTTQQLLALERKFRTKQYLSIAERAEFSSSLNLT 280

Query: 82  ETQVKIWFQNRRAKAKRLQEA 102
           ETQVKIWFQNRRAKAKRLQEA
Sbjct: 281 ETQVKIWFQNRRAKAKRLQEA 301


>gi|30575851|gb|AAP33072.1| Msx-like homeobox protein [Emys orbicularis]
          Length = 77

 Score =  136 bits (343), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 66/75 (88%), Positives = 71/75 (94%)

Query: 34  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
            LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNRR
Sbjct: 1   TLRKHKTNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRR 60

Query: 94  AKAKRLQEAEIEKIK 108
           AKAKRLQEAE+EK+K
Sbjct: 61  AKAKRLQEAELEKLK 75


>gi|341903442|gb|EGT59377.1| CBN-VAB-15 protein [Caenorhabditis brenneri]
          Length = 224

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/93 (72%), Positives = 77/93 (82%), Gaps = 5/93 (5%)

Query: 22  DSNKGDPPKLNVNL-----RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
           DS   D  K+ + L     RKHK NRKPRTPF+TQQL+SLE+KF+ KQYLSIAERAEFS+
Sbjct: 107 DSPTSDDAKIQIGLTKCMLRKHKNNRKPRTPFSTQQLISLERKFQSKQYLSIAERAEFSA 166

Query: 77  SLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKM 109
           SL LTETQVKIWFQNRRAK+KRLQEAE+EK+K 
Sbjct: 167 SLQLTETQVKIWFQNRRAKSKRLQEAEVEKVKF 199


>gi|17569281|ref|NP_509648.1| Protein VAB-15 [Caenorhabditis elegans]
 gi|1176876|sp|Q09604.1|VAB15_CAEEL RecName: Full=Homeobox protein vab-15; AltName: Full=Variable
           abnormal morphology protein 15
 gi|9502266|gb|AAF88063.1|AF286218_1 VAB-15 [Caenorhabditis elegans]
 gi|3878913|emb|CAA88539.1| Protein VAB-15 [Caenorhabditis elegans]
          Length = 225

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/93 (72%), Positives = 77/93 (82%), Gaps = 5/93 (5%)

Query: 22  DSNKGDPPKLNVNL-----RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
           DS   D  K+ + L     RKHK NRKPRTPF+TQQL+SLE+KF+ KQYLSIAERAEFS+
Sbjct: 105 DSPTSDDAKIQIGLSKCMLRKHKNNRKPRTPFSTQQLISLERKFQSKQYLSIAERAEFSA 164

Query: 77  SLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKM 109
           SL LTETQVKIWFQNRRAK+KRLQEAE+EK+K 
Sbjct: 165 SLQLTETQVKIWFQNRRAKSKRLQEAEVEKVKF 197


>gi|156405389|ref|XP_001640714.1| predicted protein [Nematostella vectensis]
 gi|156227850|gb|EDO48651.1| predicted protein [Nematostella vectensis]
          Length = 92

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 67/92 (72%), Positives = 77/92 (83%), Gaps = 6/92 (6%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNR
Sbjct: 6   CQLRKHKANRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKIWFQNR 65

Query: 93  RAKAKRLQEAEIEKIKMSAIAAARPHPLYGPG 124
           RAKAKRL EAE+EK+K+++       P   PG
Sbjct: 66  RAKAKRLHEAELEKLKLAS------KPYIAPG 91


>gi|301786673|ref|XP_002928751.1| PREDICTED: homeobox protein MSX-3-like [Ailuropoda melanoleuca]
          Length = 201

 Score =  136 bits (342), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 65/79 (82%), Positives = 73/79 (92%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+K YLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 72  CTLRKHKTNRKPRTPFTTAQLLALERKFRQKPYLSIAERAEFSSSLSLTETQVKIWFQNR 131

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQE+E+EK+K++A
Sbjct: 132 RAKAKRLQESELEKLKLAA 150


>gi|391335221|ref|XP_003741994.1| PREDICTED: homeobox protein XHOX-7.1-like [Metaseiulus
           occidentalis]
          Length = 182

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 69/89 (77%), Positives = 75/89 (84%), Gaps = 5/89 (5%)

Query: 23  SNKGDPPKL-----NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSS 77
           +  GD PK+        LRKHK NRKPRTPFTTQQLLSLE+KFR KQYLSIAERAEFSSS
Sbjct: 11  TKSGDLPKIPPQAMKCALRKHKNNRKPRTPFTTQQLLSLERKFRAKQYLSIAERAEFSSS 70

Query: 78  LHLTETQVKIWFQNRRAKAKRLQEAEIEK 106
           L+LTETQVKIWFQNRRAK KRL+EAE+EK
Sbjct: 71  LNLTETQVKIWFQNRRAKEKRLKEAEVEK 99


>gi|256078302|ref|XP_002575435.1| homeobox protein Msx [Schistosoma mansoni]
 gi|360043349|emb|CCD78762.1| msx family homeobox protein [Schistosoma mansoni]
          Length = 272

 Score =  135 bits (341), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 70/107 (65%), Positives = 81/107 (75%), Gaps = 4/107 (3%)

Query: 4   LPQLFLNEILILSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREK 63
           L +L  N+ L  S+  +    +  P K    LRKHKPNR+PRTPFTTQQLL+LE+KFR+K
Sbjct: 122 LHELSFNDYLTFSNSAIGS--RSIPQK--CTLRKHKPNRRPRTPFTTQQLLALERKFRQK 177

Query: 64  QYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMS 110
           QYLSIAERAEFS+ L LTETQVKIWFQNRRAKAKRLQE E  K  +S
Sbjct: 178 QYLSIAERAEFSNKLTLTETQVKIWFQNRRAKAKRLQEVETGKYHLS 224


>gi|153945838|ref|NP_001093604.1| transcription factor protein [Ciona intestinalis]
 gi|70570251|dbj|BAE06565.1| transcription factor protein [Ciona intestinalis]
          Length = 327

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 84/101 (83%), Gaps = 10/101 (9%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
            +LRKHKPNRKPRTPF+T+QLLSLE++F++KQYLSIAERAEFS+SL L+ETQVKIWFQNR
Sbjct: 173 CSLRKHKPNRKPRTPFSTEQLLSLERRFQDKQYLSIAERAEFSASLALSETQVKIWFQNR 232

Query: 93  RAKAKRLQEAEIEKIKMSAIAA---------ARPHPLYGPG 124
           RAKAKRL EAE EK+K++A AA          +PH LY PG
Sbjct: 233 RAKAKRLHEAEFEKVKLAAAAAAYTDLLQPPTKPHALY-PG 272


>gi|74096091|ref|NP_001027668.1| msxb homeoprotein [Ciona intestinalis]
 gi|4803667|emb|CAB42631.1| msxb homeoprotein [Ciona intestinalis]
 gi|26985931|emb|CAD56691.1| muscle segment homeobox [Ciona intestinalis]
          Length = 327

 Score =  135 bits (340), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 84/101 (83%), Gaps = 10/101 (9%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
            +LRKHKPNRKPRTPF+T+QLLSLE++F++KQYLSIAERAEFS+SL L+ETQVKIWFQNR
Sbjct: 173 CSLRKHKPNRKPRTPFSTEQLLSLERRFQDKQYLSIAERAEFSASLALSETQVKIWFQNR 232

Query: 93  RAKAKRLQEAEIEKIKMSAIAA---------ARPHPLYGPG 124
           RAKAKRL EAE EK+K++A AA          +PH LY PG
Sbjct: 233 RAKAKRLHEAEFEKVKLAAAAAAYTDLLQPPTKPHALY-PG 272


>gi|308480874|ref|XP_003102643.1| CRE-VAB-15 protein [Caenorhabditis remanei]
 gi|308261077|gb|EFP05030.1| CRE-VAB-15 protein [Caenorhabditis remanei]
          Length = 223

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 67/93 (72%), Positives = 77/93 (82%), Gaps = 5/93 (5%)

Query: 22  DSNKGDPPKLNVNL-----RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
           DS   D  K+ + L     RKHK NRKPRTPF+TQQL+SLE+KF+ KQYLSIAERAEFS+
Sbjct: 106 DSPTSDDTKIQIGLTKCMLRKHKNNRKPRTPFSTQQLISLERKFQAKQYLSIAERAEFSA 165

Query: 77  SLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKM 109
           SL LTETQVKIWFQNRRAK+KRLQEAE+EK+K 
Sbjct: 166 SLQLTETQVKIWFQNRRAKSKRLQEAEVEKVKF 198


>gi|308513116|gb|ADO33111.1| MsxB [Petromyzon marinus]
          Length = 146

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 65/77 (84%), Positives = 72/77 (93%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK  RKPRTPFTT QLL+LE KFR+KQYLSIAERAEFS+SL LTETQVKIWFQNRRA
Sbjct: 9   LRKHKATRKPRTPFTTSQLLALEHKFRQKQYLSIAERAEFSTSLSLTETQVKIWFQNRRA 68

Query: 95  KAKRLQEAEIEKIKMSA 111
           KAKRLQEAE+E++KM+A
Sbjct: 69  KAKRLQEAELERLKMAA 85


>gi|391332830|ref|XP_003740832.1| PREDICTED: uncharacterized protein LOC100900625 [Metaseiulus
           occidentalis]
          Length = 222

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 63/80 (78%), Positives = 72/80 (90%)

Query: 31  LNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90
           +   LR+HK NRKPRTPFTTQQLLSLE+KFR KQYLSIAERAEF++ L LTETQVKIWFQ
Sbjct: 115 VRCQLRRHKSNRKPRTPFTTQQLLSLERKFRGKQYLSIAERAEFANELKLTETQVKIWFQ 174

Query: 91  NRRAKAKRLQEAEIEKIKMS 110
           NRRAK KRL+EAE+EK++MS
Sbjct: 175 NRRAKEKRLKEAEVEKLRMS 194


>gi|380508380|gb|AFD64572.1| homeobox protein MSX-2 [Capra hircus]
          Length = 267

 Score =  134 bits (336), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 74/80 (92%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE++FR+KQ+LSIAERAEFSSSL+LTETQVKIWFQN
Sbjct: 133 TCTLRKHKSNRKPRTPFTTSQLLALEREFRQKQHLSIAERAEFSSSLNLTETQVKIWFQN 192

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RRAKAKR QEAE+EK+K++A
Sbjct: 193 RRAKAKRPQEAELEKLKLAA 212


>gi|164510871|emb|CAL25147.1| msh2 protein [Schmidtea mediterranea]
          Length = 190

 Score =  133 bits (335), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 62/83 (74%), Positives = 71/83 (85%)

Query: 27  DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           + P    NLRKHKPNRKPRTPFTTQQL+ LE KF  KQYLSI+ERAEFS++L+LTETQVK
Sbjct: 66  NAPNQKCNLRKHKPNRKPRTPFTTQQLMELENKFMTKQYLSISERAEFSTNLNLTETQVK 125

Query: 87  IWFQNRRAKAKRLQEAEIEKIKM 109
           IWFQNRRAKAKRL+E E+EK + 
Sbjct: 126 IWFQNRRAKAKRLEETELEKYRF 148


>gi|354499916|ref|XP_003512050.1| PREDICTED: homeobox protein MSX-3-like [Cricetulus griseus]
 gi|344255321|gb|EGW11425.1| Homeobox protein MSX-3 [Cricetulus griseus]
          Length = 191

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 64/74 (86%), Positives = 68/74 (91%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KF +KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 79  CTLRKHKNNRKPRTPFTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 138

Query: 93  RAKAKRLQEAEIEK 106
           RAKAKRLQEAE+EK
Sbjct: 139 RAKAKRLQEAELEK 152


>gi|395486397|gb|AFN67110.1| muscle segment homeobox C, partial [Gambusia holbrooki]
          Length = 73

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 63/73 (86%), Positives = 70/73 (95%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           KHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNRRAKA
Sbjct: 1   KHKNNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQNRRAKA 60

Query: 97  KRLQEAEIEKIKM 109
           KRLQEAE+EK K+
Sbjct: 61  KRLQEAELEKFKL 73


>gi|348516743|ref|XP_003445897.1| PREDICTED: homeobox protein MSX-2-like [Oreochromis niloticus]
          Length = 246

 Score =  132 bits (333), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 69/94 (73%), Positives = 82/94 (87%), Gaps = 2/94 (2%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
            +LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL L+ETQVKIWFQNR
Sbjct: 109 CSLRKHKTNRKPRTPFTTMQLLALERKFRQKQYLSIAERAEFSSSLSLSETQVKIWFQNR 168

Query: 93  RAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPS 126
           RAKAKRLQEAE+EK+K++A   ++   ++ PG S
Sbjct: 169 RAKAKRLQEAEVEKLKLAAGVGSK--AVFYPGFS 200


>gi|164510875|emb|CAL25149.1| msh2 protein [Dugesia japonica]
          Length = 222

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 64/89 (71%), Positives = 71/89 (79%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
            NLRKHKPNRKPRTPFTTQQL+ LE KF  KQYLSI+ERAEFS++L LTETQVKIWFQNR
Sbjct: 72  CNLRKHKPNRKPRTPFTTQQLMELENKFLTKQYLSISERAEFSTNLSLTETQVKIWFQNR 131

Query: 93  RAKAKRLQEAEIEKIKMSAIAAARPHPLY 121
           RAKAKRL+E E+EK +     A     LY
Sbjct: 132 RAKAKRLEETELEKYRFIKRPALEDAELY 160


>gi|426246761|ref|XP_004017158.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein MSX-2 [Ovis aries]
          Length = 346

 Score =  132 bits (332), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 67/82 (81%), Positives = 74/82 (90%), Gaps = 2/82 (2%)

Query: 32  NVNLRKHKPNRKP--RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
              LRKHK NRKP  RTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKI F
Sbjct: 210 TCTLRKHKTNRKPTLRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIXF 269

Query: 90  QNRRAKAKRLQEAEIEKIKMSA 111
           QNRRAKAKRLQEAE+EK+KM+A
Sbjct: 270 QNRRAKAKRLQEAELEKLKMAA 291


>gi|46484685|gb|AAS98252.1| homeobox protein MSX1 [Eleutherodactylus coqui]
          Length = 281

 Score =  131 bits (329), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 63/79 (79%), Positives = 70/79 (88%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK  RKP TPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LT TQVKIWFQN 
Sbjct: 148 CTLRKHKTTRKPSTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTXTQVKIWFQNX 207

Query: 93  RAKAKRLQEAEIEKIKMSA 111
            AKAKRLQEAE+EK+KM+A
Sbjct: 208 XAKAKRLQEAELEKLKMAA 226


>gi|338716372|ref|XP_001915608.2| PREDICTED: hypothetical protein LOC100146619 [Equus caballus]
          Length = 682

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 66/79 (83%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL L+ETQVKIWFQNR
Sbjct: 554 CTLRKHKNNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLSETQVKIWFQNR 613

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+K++A
Sbjct: 614 RAKAKRLQEAEVEKLKLAA 632


>gi|213515134|ref|NP_001135075.1| Homeobox protein MSX-2 [Salmo salar]
 gi|209738484|gb|ACI70111.1| Homeobox protein MSX-2 [Salmo salar]
          Length = 278

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 69/95 (72%), Positives = 79/95 (83%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           +L+ +LRKHK NRKPRTPFT+ QLLSLE+KF +KQYLSIAERAEFSSSL L+ETQVKIWF
Sbjct: 124 QLSPSLRKHKTNRKPRTPFTSSQLLSLERKFHQKQYLSIAERAEFSSSLSLSETQVKIWF 183

Query: 90  QNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPG 124
           QNRRAKAKR+QEAE EK+KM+A         Y PG
Sbjct: 184 QNRRAKAKRVQEAEAEKLKMAATGVGSKPGFYHPG 218


>gi|351700737|gb|EHB03656.1| Homeobox protein MSX-1, partial [Heterocephalus glaber]
          Length = 187

 Score =  130 bits (327), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 64/79 (81%), Positives = 71/79 (89%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKHK NRKPRTPFTT Q  ++ +KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR
Sbjct: 48  CTLRKHKTNRKPRTPFTTAQPEAIPRKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNR 107

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+KM+A
Sbjct: 108 RAKAKRLQEAELEKLKMAA 126


>gi|311277292|ref|XP_001925837.2| PREDICTED: homeobox protein MSX-3-like [Sus scrofa]
          Length = 200

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 72/101 (71%), Positives = 82/101 (81%), Gaps = 8/101 (7%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LR HK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS SL L+ETQVKIWFQNRRA
Sbjct: 74  LRPHK-NRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSGSLSLSETQVKIWFQNRRA 132

Query: 95  KAKRLQEAEIEKIKMSAIAAARP--HPLYGPGP-SPHLHQY 132
           KAKRLQEAE+E++K+    AARP  HP   P P   HL+ +
Sbjct: 133 KAKRLQEAEVERMKL----AARPLLHPFALPFPLGTHLYGF 169


>gi|348587768|ref|XP_003479639.1| PREDICTED: homeobox protein MSX-3-like [Cavia porcellus]
          Length = 202

 Score =  129 bits (324), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 61/79 (77%), Positives = 70/79 (88%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             L KHK  RKPRTPFTT QLL+LE++F +KQYLS+AERAEFS SL LTETQVKIWFQNR
Sbjct: 79  CTLGKHKNTRKPRTPFTTAQLLALERRFHQKQYLSVAERAEFSRSLSLTETQVKIWFQNR 138

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+K++A
Sbjct: 139 RAKAKRLQEAELEKLKLAA 157


>gi|90959765|dbj|BAE92723.1| homeo box, msh-like 3 [Rattus norvegicus]
          Length = 119

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 66/85 (77%), Positives = 73/85 (85%), Gaps = 5/85 (5%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NRKPRTPFTT QLL+LE+KF +KQYLSIAERAEFSSSL LTETQVKIWFQNRRAKAKRLQ
Sbjct: 2   NRKPRTPFTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRLQ 61

Query: 101 EAEIEKIKMSA-----IAAARPHPL 120
           EAE+EK+K++A      A A P PL
Sbjct: 62  EAELEKLKLTAKPLLPAAFALPFPL 86


>gi|410976369|ref|XP_003994595.1| PREDICTED: homeobox protein MSX-3-like [Felis catus]
          Length = 226

 Score =  126 bits (317), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 64/79 (81%), Positives = 74/79 (93%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             LRKH+ NRKPRTPFTT QLL+LE+KFR+KQYLS+AERAEFSSSL L+ETQVKIWFQNR
Sbjct: 79  CALRKHRTNRKPRTPFTTAQLLALERKFRQKQYLSVAERAEFSSSLSLSETQVKIWFQNR 138

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+K++A
Sbjct: 139 RAKAKRLQEAELEKLKLAA 157


>gi|1698593|gb|AAB37254.1| 3' end, includes homeodomain, partial [Helobdella sp.]
          Length = 188

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 67/83 (80%), Positives = 73/83 (87%), Gaps = 2/83 (2%)

Query: 42  RKPRTPFTTQQLLSLE-KKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           RKP TPFTTQQLL+LE KKFRE+QYLSIAERAEFSSSL+LTETQVKIWFQNRRAK+KRLQ
Sbjct: 2   RKPTTPFTTQQLLALERKKFRERQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKSKRLQ 61

Query: 101 EAEIEKIKMSAI-AAARPHPLYG 122
           EAE+EKIKM+A      P  LYG
Sbjct: 62  EAELEKIKMAARPMLGVPFSLYG 84


>gi|158936922|dbj|BAF91576.1| Msx protein [Artemia franciscana]
          Length = 134

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 70/102 (68%), Positives = 77/102 (75%), Gaps = 5/102 (4%)

Query: 49  TTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIK 108
           TTQQL++LEKKFREKQYLSIAERAEFS+SL LTETQVKIWFQNRRAKAKRLQEAEIEKI+
Sbjct: 1   TTQQLMALEKKFREKQYLSIAERAEFSASLQLTETQVKIWFQNRRAKAKRLQEAEIEKIR 60

Query: 109 MSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHHPHPFSA 150
           MS   AARP  L  P P   L   +Q A P +     +P S 
Sbjct: 61  MS---AARPLGL--PPPFGLLPGLYQGACPTSTSTQSNPHSG 97


>gi|4731430|gb|AAD28493.1|AF061271_1 muscle segment homeobox Msx-2 [Ambystoma mexicanum]
          Length = 125

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 59/69 (85%), Positives = 63/69 (91%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL LTETQVKIWFQN
Sbjct: 57  TCTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSNSLALTETQVKIWFQN 116

Query: 92  RRAKAKRLQ 100
           RRAKAKRLQ
Sbjct: 117 RRAKAKRLQ 125


>gi|157630|gb|AAA28611.1| putative, partial [Drosophila melanogaster]
          Length = 61

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/61 (98%), Positives = 60/61 (98%)

Query: 40  PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
           PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL LTETQVKIWFQNRRAKAKRL
Sbjct: 1   PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLRLTETQVKIWFQNRRAKAKRL 60

Query: 100 Q 100
           Q
Sbjct: 61  Q 61


>gi|195158811|ref|XP_002020278.1| GL13893 [Drosophila persimilis]
 gi|194117047|gb|EDW39090.1| GL13893 [Drosophila persimilis]
          Length = 436

 Score =  123 bits (308), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 60/67 (89%), Positives = 62/67 (92%)

Query: 51  QQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMS 110
           QQLLSLEKKFREKQYLSIAERAEFSSSL LTETQVKIWFQNRRAKAKRLQEAEIEKIKM+
Sbjct: 352 QQLLSLEKKFREKQYLSIAERAEFSSSLRLTETQVKIWFQNRRAKAKRLQEAEIEKIKMA 411

Query: 111 AIAAARP 117
           A+    P
Sbjct: 412 ALGRGAP 418


>gi|358253470|dbj|GAA53140.1| homeobox protein MSX-2, partial [Clonorchis sinensis]
          Length = 126

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 60/79 (75%), Positives = 69/79 (87%), Gaps = 2/79 (2%)

Query: 19  LLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL 78
           L+S  ++  P K    LRKHKPNRKPRTPFTTQQL++LE+KFR+KQYLSIAERAEFS++L
Sbjct: 50  LVSKYDQTGPQK--CTLRKHKPNRKPRTPFTTQQLVALERKFRQKQYLSIAERAEFSANL 107

Query: 79  HLTETQVKIWFQNRRAKAK 97
            LTETQVKIWFQNRRAKAK
Sbjct: 108 TLTETQVKIWFQNRRAKAK 126


>gi|313229201|emb|CBY23786.1| unnamed protein product [Oikopleura dioica]
          Length = 249

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 77/101 (76%), Gaps = 4/101 (3%)

Query: 17  SPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
           SP  SD NK   P L  NLR+HK +RKPRTPF+++QL  LE +F +KQYL+I ERAEFS+
Sbjct: 134 SPPKSDENK---PTLVSNLRRHKRDRKPRTPFSSEQLERLESRFADKQYLTIPERAEFSN 190

Query: 77  SLHLTETQVKIWFQNRRAKAKRLQEAEIEKIK-MSAIAAAR 116
            L LTETQVKIWFQNRRAK KRL EAEIEK++ M   A A+
Sbjct: 191 ELSLTETQVKIWFQNRRAKQKRLAEAEIEKVRYMVGTAQAQ 231


>gi|56714069|gb|AAW24005.1| homeodomain protein Msx [Oikopleura dioica]
          Length = 252

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 65/101 (64%), Positives = 77/101 (76%), Gaps = 4/101 (3%)

Query: 17  SPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
           SP  SD NK   P L  NLR+HK +RKPRTPF+++QL  LE +F +KQYL+I ERAEFS+
Sbjct: 137 SPPKSDENK---PTLVSNLRRHKRDRKPRTPFSSEQLERLESRFADKQYLTIPERAEFSN 193

Query: 77  SLHLTETQVKIWFQNRRAKAKRLQEAEIEKIK-MSAIAAAR 116
            L LTETQVKIWFQNRRAK KRL EAEIEK++ M   A A+
Sbjct: 194 ELSLTETQVKIWFQNRRAKQKRLAEAEIEKVRYMVGTAQAQ 234


>gi|313216973|emb|CBY38173.1| unnamed protein product [Oikopleura dioica]
          Length = 251

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 62/93 (66%), Positives = 73/93 (78%), Gaps = 3/93 (3%)

Query: 17  SPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
           SP  SD NK   P L  NLR+HK +RKPRTPF+++QL  LE +F +KQYL+I ERAEFS+
Sbjct: 134 SPPKSDENK---PTLVSNLRRHKRDRKPRTPFSSEQLERLESRFADKQYLTIPERAEFSN 190

Query: 77  SLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKM 109
            L LTETQVKIWFQNRRAK KRL EAEIEK+ +
Sbjct: 191 ELSLTETQVKIWFQNRRAKQKRLAEAEIEKVNV 223


>gi|313243080|emb|CBY39775.1| unnamed protein product [Oikopleura dioica]
          Length = 226

 Score =  120 bits (300), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 62/91 (68%), Positives = 72/91 (79%), Gaps = 3/91 (3%)

Query: 17  SPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
           SP  SD NK   P L  NLR+HK +RKPRTPF+++QL  LE +F +KQYL+I ERAEFS+
Sbjct: 137 SPPKSDENK---PTLVSNLRRHKRDRKPRTPFSSEQLERLESRFADKQYLTIPERAEFSN 193

Query: 77  SLHLTETQVKIWFQNRRAKAKRLQEAEIEKI 107
            L LTETQVKIWFQNRRAK KRL EAEIEK+
Sbjct: 194 ELSLTETQVKIWFQNRRAKQKRLAEAEIEKV 224


>gi|85401|pir||PS0405 muscle segment homeotic protein - sea squirt (Ciona intestinalis)
           (fragment)
          Length = 61

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/61 (93%), Positives = 60/61 (98%)

Query: 40  PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
           PNRKPRTPFTTQQL+SLEKKFREKQYLSIAERAEFS+SL LTETQVKIWFQNRRAK+KRL
Sbjct: 1   PNRKPRTPFTTQQLMSLEKKFREKQYLSIAERAEFSNSLSLTETQVKIWFQNRRAKSKRL 60

Query: 100 Q 100
           Q
Sbjct: 61  Q 61


>gi|195373732|ref|XP_002046027.1| GM17434 [Drosophila sechellia]
 gi|194122946|gb|EDW44989.1| GM17434 [Drosophila sechellia]
          Length = 84

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 61/82 (74%), Positives = 65/82 (79%), Gaps = 6/82 (7%)

Query: 52  QLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSA 111
           QLLSLEKKFREKQYLSIAERAEFSSSL LTETQVKIWFQNRRAKAKRL+EAEIEKIKM+A
Sbjct: 1   QLLSLEKKFREKQYLSIAERAEFSSSLRLTETQVKIWFQNRRAKAKRLREAEIEKIKMAA 60

Query: 112 IAAARPHPLYGPGPSPHLHQYF 133
           +          PG    +  YF
Sbjct: 61  LGRG------APGAQWAMAGYF 76


>gi|158936932|dbj|BAF91581.1| Msx protein [Urechis caupo]
          Length = 128

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 62/78 (79%), Positives = 69/78 (88%), Gaps = 6/78 (7%)

Query: 49  TTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIK 108
           TTQQLL+LE+KFREKQYLSIAERAEFSSSL+LTETQVKIWFQNRRAK+KRLQEAE+EKIK
Sbjct: 1   TTQQLLALERKFREKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKSKRLQEAELEKIK 60

Query: 109 MSAIAAARPH--PLYGPG 124
           M    A+RP   P +G G
Sbjct: 61  M----ASRPLLPPAFGIG 74


>gi|306020803|gb|ADM79455.1| muscle segment homeobox [Cupiennius salei]
          Length = 256

 Score =  117 bits (293), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 58/74 (78%), Positives = 65/74 (87%), Gaps = 2/74 (2%)

Query: 26  GDPPKL--NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTET 83
           G+ PKL     LRKHK NRKPRTPFTTQQLL+LE+KFR KQYLSIAERAEFSSSL+LTET
Sbjct: 183 GELPKLPMKCQLRKHKSNRKPRTPFTTQQLLALERKFRSKQYLSIAERAEFSSSLNLTET 242

Query: 84  QVKIWFQNRRAKAK 97
           QVKIWFQNR+ K++
Sbjct: 243 QVKIWFQNRKPKSR 256


>gi|34577042|gb|AAO06123.1| MsxE/1 homeobox protein [Xiphophorus hellerii]
          Length = 158

 Score =  117 bits (292), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/61 (90%), Positives = 59/61 (96%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRA
Sbjct: 98  LRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRA 157

Query: 95  K 95
           K
Sbjct: 158 K 158


>gi|158936914|dbj|BAF91572.1| Msx protein [Scolionema suvaense]
          Length = 307

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 63/72 (87%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPF+  QLL+LE+KF+ KQYLSI+ER+E S  L LTETQ+KIWFQNRRA
Sbjct: 193 LRKHKANRKPRTPFSASQLLTLEQKFKRKQYLSISERSELSEQLKLTETQIKIWFQNRRA 252

Query: 95  KAKRLQEAEIEK 106
           K KRL+EAE+EK
Sbjct: 253 KEKRLKEAEMEK 264


>gi|193892|gb|AAA37824.1| putative, partial [Mus musculus]
          Length = 61

 Score =  116 bits (290), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 55/61 (90%), Positives = 59/61 (96%)

Query: 40  PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
            NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRAKAKRL
Sbjct: 1   TNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRL 60

Query: 100 Q 100
           Q
Sbjct: 61  Q 61


>gi|395528990|ref|XP_003766606.1| PREDICTED: homeobox protein MSH-C-like [Sarcophilus harrisii]
          Length = 257

 Score =  115 bits (288), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 56/78 (71%), Positives = 66/78 (84%)

Query: 34  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
            LRKHK   KP TPFTT Q L+LEKKF++KQYLS AERAEF +SL LTE +VK+WFQNRR
Sbjct: 126 TLRKHKNIGKPWTPFTTSQRLALEKKFQQKQYLSAAERAEFCTSLSLTERRVKVWFQNRR 185

Query: 94  AKAKRLQEAEIEKIKMSA 111
           AKAKRLQE E+EK+K++A
Sbjct: 186 AKAKRLQETEVEKLKLAA 203


>gi|62002543|gb|AAX58756.1| homeodomain protein Msx [Podocoryna carnea]
          Length = 201

 Score =  115 bits (288), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 61/72 (84%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPF+  QLL+LE+ F+ KQYLSI ERAE S  L+LTETQ+KIWFQNRRA
Sbjct: 95  LRKHKANRKPRTPFSASQLLTLEQNFKRKQYLSINERAELSEQLNLTETQIKIWFQNRRA 154

Query: 95  KAKRLQEAEIEK 106
           K KRL+EAE EK
Sbjct: 155 KEKRLREAEFEK 166


>gi|158936920|dbj|BAF91575.1| MsxB protein [Pandinus imperator]
          Length = 116

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 59/79 (74%), Positives = 68/79 (86%), Gaps = 2/79 (2%)

Query: 49  TTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIK 108
           TTQQLL+LE+KFR KQYLSIAERAEFSSSL+LTETQVKIWFQNRRAK KRL+EAE+EK++
Sbjct: 1   TTQQLLALERKFRNKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKEKRLKEAELEKLR 60

Query: 109 MSA--IAAARPHPLYGPGP 125
           MSA  +  +    L GPGP
Sbjct: 61  MSARPLLPSFGFTLAGPGP 79


>gi|193890|gb|AAA37823.1| putative, partial [Mus musculus]
 gi|214988|gb|AAA50031.1| putative, partial [Danio rerio]
          Length = 61

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/61 (90%), Positives = 58/61 (95%)

Query: 40  PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
            NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNRRAKAKRL
Sbjct: 1   TNRKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 60

Query: 100 Q 100
           Q
Sbjct: 61  Q 61


>gi|300103|gb|AAB26489.1| Hox 8 homolog [Strongylocentrotus purpuratus=purple sea urchins,
           Peptide Partial, 61 aa]
          Length = 61

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 59/61 (96%)

Query: 40  PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
            NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNRRAKAKRL
Sbjct: 1   TNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKIWFQNRRAKAKRL 60

Query: 100 Q 100
           Q
Sbjct: 61  Q 61


>gi|214992|gb|AAA50033.1| putative, partial [Danio rerio]
          Length = 61

 Score =  114 bits (286), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 54/60 (90%), Positives = 59/60 (98%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNRRAKAKRLQ
Sbjct: 2   NRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQNRRAKAKRLQ 61


>gi|158936928|dbj|BAF91579.1| Msx protein [Lingula anatina]
          Length = 115

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 55/63 (87%), Positives = 62/63 (98%)

Query: 49  TTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIK 108
           TT QLL+LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRAKAKRLQEAE+EK+K
Sbjct: 1   TTAQLLALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLK 60

Query: 109 MSA 111
           M+A
Sbjct: 61  MAA 63


>gi|214990|gb|AAA50032.1| putative, partial [Danio rerio]
          Length = 61

 Score =  114 bits (285), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 59/61 (96%)

Query: 40  PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
            NRKPRTPF+T QLLSLE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNRRAKAKRL
Sbjct: 1   TNRKPRTPFSTSQLLSLERKFRQKQYLSIAERAEFSNSLNLTETQVKIWFQNRRAKAKRL 60

Query: 100 Q 100
           Q
Sbjct: 61  Q 61


>gi|7130|emb|CAA45912.1| msh [Hydra viridissima]
          Length = 128

 Score =  114 bits (284), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 54/72 (75%), Positives = 62/72 (86%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPF+  QLL+LE+KF+ KQYLSI+ERAE S  L LTETQ+KIWFQNRRA
Sbjct: 11  LRKHKANRKPRTPFSVNQLLTLEQKFKRKQYLSISERAELSELLRLTETQIKIWFQNRRA 70

Query: 95  KAKRLQEAEIEK 106
           K KR +EAEIE+
Sbjct: 71  KQKRSKEAEIEE 82


>gi|110339057|gb|ABG67792.1| MSXA, partial [Nematostella vectensis]
          Length = 60

 Score =  112 bits (280), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 53/59 (89%), Positives = 58/59 (98%)

Query: 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
          NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNRRAKAKRL
Sbjct: 1  NRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKIWFQNRRAKAKRL 59


>gi|449474490|ref|XP_004175886.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein MSX-2 [Taeniopygia
           guttata]
          Length = 258

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 56/75 (74%), Positives = 64/75 (85%), Gaps = 1/75 (1%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           KHK N+ P +     QL +LE K R+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRAKA
Sbjct: 130 KHKTNKCPYS-VQNSQLXALEGKLRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKA 188

Query: 97  KRLQEAEIEKIKMSA 111
           KRLQEAE+EK+KM+A
Sbjct: 189 KRLQEAELEKLKMAA 203


>gi|193894|gb|AAA37825.1| putative, partial [Mus musculus]
          Length = 61

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 54/61 (88%), Positives = 57/61 (93%)

Query: 40  PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
            NRKPRTPFTT QLL+LE+KF +KQYLSIAERAEFSSSL LTETQVKIWFQNRRAKAKRL
Sbjct: 1   TNRKPRTPFTTAQLLALERKFHQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 60

Query: 100 Q 100
           Q
Sbjct: 61  Q 61


>gi|158936930|dbj|BAF91580.1| Msx protein [Milnesium tardigradum]
          Length = 123

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 59/62 (95%)

Query: 49  TTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIK 108
           TTQQL++LE+K+R KQYLSIAERAEFS+ L+LTETQVKIWFQNRRAK KRLQEAEIEK+K
Sbjct: 1   TTQQLMALERKYRNKQYLSIAERAEFSTQLNLTETQVKIWFQNRRAKQKRLQEAEIEKVK 60

Query: 109 MS 110
           M+
Sbjct: 61  MA 62


>gi|158936918|dbj|BAF91574.1| MsxA protein [Pandinus imperator]
          Length = 108

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 58/85 (68%), Positives = 70/85 (82%), Gaps = 2/85 (2%)

Query: 49  TTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIK 108
           TTQQLL+LE+KFR KQYLSIAERAEFS SL+LTETQVKIWFQNRRAK KRL+E E+E+++
Sbjct: 1   TTQQLLALERKFRVKQYLSIAERAEFSGSLNLTETQVKIWFQNRRAKEKRLKETEMERLE 60

Query: 109 MSAIAA-ARPHP-LYGPGPSPHLHQ 131
           M+A +A  R HP  +  G SP+  Q
Sbjct: 61  MAARSAHLRDHPSSFYLGLSPYFAQ 85


>gi|7544122|dbj|BAA94301.1| msh/msx class homeobox [Oryzias latipes]
          Length = 123

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 52/58 (89%), Positives = 55/58 (94%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90
            NLRKHK NRKPRTPFTT QLLSLE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQ
Sbjct: 65  CNLRKHKNNRKPRTPFTTSQLLSLERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQ 122


>gi|158936934|dbj|BAF91582.1| Msx protein [Thysanozoon sp. LCN2004]
          Length = 156

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 51/63 (80%), Positives = 62/63 (98%)

Query: 49  TTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIK 108
           TTQQLL+LE+KF +KQYLSIAERAEFS++L+LTETQVKIWFQNRRAKAKRLQEAE+EK++
Sbjct: 1   TTQQLLALERKFGQKQYLSIAERAEFSANLNLTETQVKIWFQNRRAKAKRLQEAELEKLR 60

Query: 109 MSA 111
           +S+
Sbjct: 61  ISS 63


>gi|158936924|dbj|BAF91577.1| Msx protein [Loligo bleekeri]
          Length = 114

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 60/63 (95%)

Query: 49  TTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIK 108
           TT QLL+LE+KFR KQYLSIAERAEFS+SL+LTETQVKIWFQNRRAKAKRL EAE+EK+K
Sbjct: 1   TTSQLLALERKFRTKQYLSIAERAEFSASLNLTETQVKIWFQNRRAKAKRLHEAELEKLK 60

Query: 109 MSA 111
           M+A
Sbjct: 61  MAA 63


>gi|14278377|pdb|1IG7|A Chain A, Msx-1 HomeodomainDNA COMPLEX STRUCTURE
          Length = 58

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/58 (91%), Positives = 56/58 (96%)

Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
          RKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNRRAKAKRL
Sbjct: 1  RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58


>gi|158936926|dbj|BAF91578.1| Msx protein, partial [Amphioctopus fangsiao]
          Length = 114

 Score =  110 bits (276), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 53/63 (84%), Positives = 60/63 (95%)

Query: 49  TTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIK 108
           TT QLL+LE+KFR KQYLSIAERAEFS+SL+LTETQVKIWFQNRRAKAKRL EAE+EK+K
Sbjct: 1   TTSQLLALERKFRTKQYLSIAERAEFSASLNLTETQVKIWFQNRRAKAKRLHEAELEKLK 60

Query: 109 MSA 111
           M+A
Sbjct: 61  MAA 63


>gi|158936936|dbj|BAF91583.1| Msx protein [Anemonia erythraea]
          Length = 129

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 51/62 (82%), Positives = 60/62 (96%)

Query: 49  TTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIK 108
           TT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNRRAKAKRL EAE+EK+K
Sbjct: 1   TTSQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKIWFQNRRAKAKRLHEAELEKLK 60

Query: 109 MS 110
           ++
Sbjct: 61  LA 62


>gi|7635742|emb|CAB88390.1| msh homeoprotein [Hydra vulgaris]
          Length = 123

 Score =  109 bits (272), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 53/72 (73%), Positives = 60/72 (83%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           LRKHK NRKPRTPF+  QLL+LE+KF+ KQYLSI+ER+E S  L LTETQ KIWFQNRRA
Sbjct: 6   LRKHKANRKPRTPFSVNQLLALEQKFKRKQYLSISERSELSVMLRLTETQRKIWFQNRRA 65

Query: 95  KAKRLQEAEIEK 106
           K KR  EAEIE+
Sbjct: 66  KQKRRTEAEIEE 77


>gi|507133|gb|AAA20151.1| homeobox-containing protein, partial [Ephydatia fluviatilis]
          Length = 157

 Score =  109 bits (272), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 50/72 (69%), Positives = 62/72 (86%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           + K K +RKPRTPFT+ QL++LE+KFR+++YLS+AERAEF+  L LTETQVKIWFQNRRA
Sbjct: 11  INKQKKDRKPRTPFTSTQLIALERKFRQQKYLSVAERAEFAEYLKLTETQVKIWFQNRRA 70

Query: 95  KAKRLQEAEIEK 106
           K KRL EAE E+
Sbjct: 71  KEKRLHEAEAER 82


>gi|241669379|ref|XP_002399615.1| Bar protein, putative [Ixodes scapularis]
 gi|215506172|gb|EEC15666.1| Bar protein, putative [Ixodes scapularis]
          Length = 119

 Score =  108 bits (271), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 61/89 (68%), Positives = 69/89 (77%), Gaps = 13/89 (14%)

Query: 46  TPFTTQ------QLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
           TPF+ +      QLLSLE+KFR KQYLSIAERAEFSSSL LTETQVKIWFQNRRAK KRL
Sbjct: 11  TPFSVEALLADVQLLSLERKFRAKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKEKRL 70

Query: 100 QEAEIEKIKMSAIAAARP--HPLYGP-GP 125
           +EAEIE+++M    A RP   P +GP GP
Sbjct: 71  KEAEIERLRM----ATRPPVLPFFGPFGP 95


>gi|358419287|ref|XP_003584187.1| PREDICTED: uncharacterized protein LOC616097 [Bos taurus]
          Length = 711

 Score =  108 bits (269), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 57/92 (61%), Positives = 73/92 (79%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
           +S   +G P      L K K +R+PRTPFT  QLL+LE+ F ++Q++S+AERA FSSSL 
Sbjct: 502 VSPEARGAPSPPACALGKQKSDREPRTPFTAAQLLALERGFGQQQHVSVAERAAFSSSLS 561

Query: 80  LTETQVKIWFQNRRAKAKRLQEAEIEKIKMSA 111
           L+ETQVKIWFQNRRAKAKRLQEAE+EK+K++A
Sbjct: 562 LSETQVKIWFQNRRAKAKRLQEAELEKLKLTA 593


>gi|440909569|gb|ELR59465.1| Homeobox protein MSX-3 [Bos grunniens mutus]
          Length = 589

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 68/79 (86%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
             L K K +R+PRTPFT  QLL+LE+ F ++Q++S+AERA FSSSL L+ETQVKIWFQNR
Sbjct: 485 CALGKQKSDREPRTPFTAAQLLALERGFGQQQHVSVAERAAFSSSLSLSETQVKIWFQNR 544

Query: 93  RAKAKRLQEAEIEKIKMSA 111
           RAKAKRLQEAE+EK+K++A
Sbjct: 545 RAKAKRLQEAELEKLKLTA 563


>gi|158936916|dbj|BAF91573.1| MsxA protein [Limulus polyphemus]
          Length = 124

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 67/138 (48%), Positives = 80/138 (57%), Gaps = 19/138 (13%)

Query: 49  TTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIK 108
           TTQQL++LE+KFR KQYLSI++RAEFSSSL+LTETQVKIWFQNRRAK KRL+EAE+EK +
Sbjct: 1   TTQQLMALERKFRRKQYLSISDRAEFSSSLNLTETQVKIWFQNRRAKEKRLKEAELEKSR 60

Query: 109 MSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHH----PHPFSALLGRHPAMAHFMPA 164
           +    AARP           L   F    P   L       H  S   G  P +A F+  
Sbjct: 61  I----AARP-----------LLNNFGFGLPVTFLSEVPPATHLSSFAEGIRPILAPFITT 105

Query: 165 APMPQNSPPGGSDMKASP 182
            PM   SP   +     P
Sbjct: 106 YPMYSFSPTSSAPFAICP 123


>gi|310706331|gb|ADP08778.1| muscle segment homeobox D [Astyanax mexicanus]
          Length = 107

 Score =  107 bits (266), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/65 (81%), Positives = 60/65 (92%)

Query: 53  LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAI 112
           LL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNRRAKAKRLQEAE+EK+K++A 
Sbjct: 1   LLALERKFRQKQYLSIAERAEFSSSLTLTETQVKIWFQNRRAKAKRLQEAELEKLKLAAK 60

Query: 113 AAARP 117
            A  P
Sbjct: 61  PALHP 65


>gi|402593379|gb|EJW87306.1| hypothetical protein WUBG_01783 [Wuchereria bancrofti]
          Length = 211

 Score =  106 bits (265), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 49/56 (87%), Positives = 54/56 (96%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90
           LRKHK NRKPRTPF+TQQLLSLE+KF++KQYLSIAERAEFS+SL LTETQVKIWFQ
Sbjct: 141 LRKHKNNRKPRTPFSTQQLLSLERKFQQKQYLSIAERAEFSASLQLTETQVKIWFQ 196


>gi|577787|emb|CAA58044.1| transcription factor [Notophthalmus viridescens]
          Length = 113

 Score =  106 bits (264), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 50/58 (86%), Positives = 56/58 (96%)

Query: 54  LSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSA 111
           L+LE+KFR+KQYLSIAERAEFS SL LTETQVKIWFQNRRAKAKRLQEAE+EK+KM+A
Sbjct: 1   LALERKFRQKQYLSIAERAEFSGSLSLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA 58


>gi|449267060|gb|EMC78026.1| Homeobox protein MSX-2, partial [Columba livia]
          Length = 112

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 50/57 (87%), Positives = 57/57 (100%)

Query: 55  SLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSA 111
           +LE+KFR+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRAKAKRLQEAE+EK+KM+A
Sbjct: 1   ALERKFRQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA 57


>gi|170589755|ref|XP_001899639.1| Homeobox protein vab-15 [Brugia malayi]
 gi|158593852|gb|EDP32447.1| Homeobox protein vab-15, putative [Brugia malayi]
          Length = 224

 Score =  105 bits (263), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 49/56 (87%), Positives = 54/56 (96%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90
           LRKHK NRKPRTPF+TQQLLSLE+KF++KQYLSIAERAEFS+SL LTETQVKIWFQ
Sbjct: 155 LRKHKNNRKPRTPFSTQQLLSLERKFQQKQYLSIAERAEFSASLQLTETQVKIWFQ 210


>gi|393906719|gb|EFO26092.2| hypothetical protein LOAG_02387 [Loa loa]
          Length = 212

 Score =  105 bits (262), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/56 (87%), Positives = 54/56 (96%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90
           LRKHK NRKPRTPF+TQQLLSLE+KF++KQYLSIAERAEFS+SL LTETQVKIWFQ
Sbjct: 141 LRKHKNNRKPRTPFSTQQLLSLERKFQQKQYLSIAERAEFSASLQLTETQVKIWFQ 196


>gi|312070064|ref|XP_003137973.1| hypothetical protein LOAG_02387 [Loa loa]
          Length = 179

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 49/56 (87%), Positives = 54/56 (96%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90
           LRKHK NRKPRTPF+TQQLLSLE+KF++KQYLSIAERAEFS+SL LTETQVKIWFQ
Sbjct: 108 LRKHKNNRKPRTPFSTQQLLSLERKFQQKQYLSIAERAEFSASLQLTETQVKIWFQ 163


>gi|15787868|dbj|BAB68535.1| LjMsxA [Lethenteron camtschaticum]
          Length = 111

 Score =  103 bits (257), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 48/57 (84%), Positives = 56/57 (98%)

Query: 57  EKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIA 113
           E+K+R+KQYLSIAERAEFS+SL+LTETQVKIWFQNRRAKAKRLQEAE+EK+KM+A A
Sbjct: 1   ERKYRQKQYLSIAERAEFSNSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAAAA 57


>gi|310706333|gb|ADP08779.1| muscle segment homeobox E [Astyanax mexicanus]
          Length = 102

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 63/114 (55%), Positives = 74/114 (64%), Gaps = 18/114 (15%)

Query: 53  LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAI 112
           LL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNR AKAKRLQEAE+E++KM+A 
Sbjct: 1   LLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRLAKAKRLQEAELERLKMAA- 59

Query: 113 AAARPHPLYGPGPSPHLHQYFQHASPEALLHHPHPFSALLGRHPAMAHFMPAAP 166
                         P L   F  + P    H P  +    G HP   H +PA+P
Sbjct: 60  -------------KPTLPPAFGISFPLGA-HMPGSYG---GTHPFQRHAVPASP 96


>gi|6567193|dbj|BAA88311.1| homeobox protein Msx4 [Oryzias latipes]
          Length = 150

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 48/59 (81%), Positives = 52/59 (88%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90
              LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLS+ ERAEFSSSL LTETQVKIWFQ
Sbjct: 92  GCQLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSMPERAEFSSSLTLTETQVKIWFQ 150


>gi|82621577|gb|ABB86460.1| MSX-ANTP class homeobox protein, partial [Nematostella vectensis]
          Length = 53

 Score =  102 bits (253), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 47/53 (88%), Positives = 52/53 (98%)

Query: 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
          NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFS+SL+LTETQVKIWFQNRR
Sbjct: 1  NRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSASLNLTETQVKIWFQNRR 53


>gi|391335219|ref|XP_003741993.1| PREDICTED: homeobox protein DLX-1-like [Metaseiulus occidentalis]
          Length = 248

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/69 (65%), Positives = 55/69 (79%)

Query: 34  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
           NLR+ + +RKPRTPFTT QL +LE++F  K YLS ++R E +  L LTETQVKIWFQNRR
Sbjct: 158 NLRRQRTDRKPRTPFTTVQLATLERRFHSKHYLSNSDRIEIAKDLGLTETQVKIWFQNRR 217

Query: 94  AKAKRLQEA 102
           AK KR+QEA
Sbjct: 218 AKEKRIQEA 226


>gi|283464199|gb|ADB22683.1| msh homeobox 2 [Capra hircus]
          Length = 99

 Score = 97.1 bits (240), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 46/51 (90%), Positives = 51/51 (100%)

Query: 61  REKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSA 111
           R+KQYLSIAERAEFSSSL+LTETQVKIWFQNRRAKAKRLQEAE+EK+KM+A
Sbjct: 1   RQKQYLSIAERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA 51


>gi|340370700|ref|XP_003383884.1| PREDICTED: hypothetical protein LOC100631603 [Amphimedon
           queenslandica]
 gi|184191099|gb|ACC76762.1| Msx [Amphimedon queenslandica]
          Length = 380

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 52/85 (61%), Positives = 65/85 (76%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           + +P  S S  G P      L+K K +RKPRTPFT+ QL++LE+KFR+++YLS+AERAEF
Sbjct: 174 IHTPDGSQSVSGSPTIGQAKLKKQKKDRKPRTPFTSTQLIALERKFRQQRYLSVAERAEF 233

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRL 99
           +  L LTETQVKIWFQNRRAK KRL
Sbjct: 234 AEYLKLTETQVKIWFQNRRAKEKRL 258


>gi|440546376|dbj|BAG14361.2| homeobox-containing Dlx1 [Scyliorhinus torazame]
          Length = 253

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 60/80 (75%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL+++ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 123 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALSERAELAASLGLTQTQVKIWFQNKRSKF 182

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           KRL +     ++ SA+A  R
Sbjct: 183 KRLMKQGNGALENSALANGR 202


>gi|110761972|ref|XP_001122113.1| PREDICTED: hypothetical protein LOC726370 [Apis mellifera]
          Length = 631

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 52/64 (81%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LEK+FR+ +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 508 RRPRTAFTSQQLLELEKQFRQNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 567

Query: 102 AEIE 105
           A+ E
Sbjct: 568 AQQE 571


>gi|340723574|ref|XP_003400164.1| PREDICTED: hypothetical protein LOC100651894 [Bombus terrestris]
          Length = 630

 Score = 85.9 bits (211), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 52/64 (81%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LEK+FR+ +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 508 RRPRTAFTSQQLLELEKQFRQNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 567

Query: 102 AEIE 105
           A+ E
Sbjct: 568 AQQE 571


>gi|391334591|ref|XP_003741686.1| PREDICTED: uncharacterized protein LOC100905863 [Metaseiulus
           occidentalis]
          Length = 350

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 40/89 (44%), Positives = 58/89 (65%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           +  PL   +     P+ N    K K  RKPRT +++ QL  L ++F+  QYL++ ERAE 
Sbjct: 144 MDDPLRGSAGGAQTPQGNTTGPKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAEL 203

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAE 103
           ++SL LT+TQVKIWFQNRR+K K++ +A 
Sbjct: 204 AASLGLTQTQVKIWFQNRRSKCKKMLKAS 232


>gi|380027860|ref|XP_003697633.1| PREDICTED: homeobox protein rough-like [Apis florea]
          Length = 267

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 61/88 (69%), Gaps = 1/88 (1%)

Query: 36  RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
           RK    R+ RT F+ +Q L LE ++R  +Y+S   R E ++SLHLTETQ+KIWFQNRRAK
Sbjct: 97  RKEGRPRRQRTTFSGEQTLRLEVEYRRGEYISRGRRFELATSLHLTETQIKIWFQNRRAK 156

Query: 96  AKRLQEAEIEK-IKMSAIAAARPHPLYG 122
            KR+++A++++  +  AI+     P+YG
Sbjct: 157 DKRIEKAQLDQYYRNFAISNGINLPIYG 184


>gi|154933905|gb|ABS88750.1| homeobox-containing Msx2-like protein [Trachemys scripta]
          Length = 132

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 41/49 (83%), Positives = 45/49 (91%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
             LRKHK NRKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL+LT
Sbjct: 84  CTLRKHKTNRKPRTPFTTSQLLALERKFRQKQYLSIAERAEFSSSLNLT 132


>gi|47551103|ref|NP_999726.1| homeobox protein Hmx [Strongylocentrotus purpuratus]
 gi|18202521|sp|Q26656.1|HMX_STRPU RecName: Full=Homeobox protein Hmx; Short=SpHmx; AltName:
           Full=H6-like
 gi|1332413|dbj|BAA12721.1| homeobox [Strongylocentrotus purpuratus]
          Length = 405

 Score = 85.5 bits (210), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 46/106 (43%), Positives = 61/106 (57%)

Query: 39  KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           K  +K RT F+  Q+  LE  F  K+YLS +ERA  +++LHLTETQVKIWFQNRR K KR
Sbjct: 251 KKKKKTRTVFSRSQVFQLESTFEVKRYLSSSERAGLAANLHLTETQVKIWFQNRRNKWKR 310

Query: 99  LQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHH 144
              AE+E   ++  A  R         + H+H Y Q      +L+H
Sbjct: 311 QMAAELESANLAHAAQIRAQANLAQVSAVHVHAYAQRMVRVPILYH 356


>gi|47218082|emb|CAG09954.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 253

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 123 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 182

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     I  SA+A+ R
Sbjct: 183 KKLMKQGNGTIDASALASGR 202


>gi|383857607|ref|XP_003704296.1| PREDICTED: uncharacterized protein LOC100882296 [Megachile
           rotundata]
          Length = 617

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 52/64 (81%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LEK+FR+ +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 495 RRPRTAFTSQQLLELEKQFRQNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 554

Query: 102 AEIE 105
           A+ E
Sbjct: 555 AQQE 558


>gi|253828373|gb|ACT36592.1| rough [Nematostella vectensis]
          Length = 225

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 47/105 (44%), Positives = 72/105 (68%), Gaps = 7/105 (6%)

Query: 36  RKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
           RK K N  R+ RT FT++Q L LE +F + +Y++ + R E ++ L+LTETQVKIWFQNRR
Sbjct: 109 RKRKENKPRRQRTTFTSEQTLKLELEFHQNEYITRSRRFELAACLNLTETQVKIWFQNRR 168

Query: 94  AKAKRLQEAEIE-KIKMSAIAAARPHP-LYGPGPSPHLHQYFQHA 136
           AK KRL++A++E ++++++      +P  Y    SPH   YF++A
Sbjct: 169 AKDKRLEKAQMEQQLRLASYTNTMAYPGSYLNYYSPH---YFKNA 210


>gi|270010104|gb|EFA06552.1| hypothetical protein TcasGA2_TC009461 [Tribolium castaneum]
          Length = 283

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 52/64 (81%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LEK+FR+ +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 164 RRPRTAFTSQQLLELEKQFRQNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 223

Query: 102 AEIE 105
           A+ E
Sbjct: 224 AQQE 227


>gi|56385105|gb|AAV85983.1| Dlx1 [Triakis semifasciata]
          Length = 253

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 63/89 (70%), Gaps = 2/89 (2%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 123 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 182

Query: 97  KRLQEAEIEKIKMSAIAAARPHPLYGPGP 125
           K+L +     ++ SA+A  R   L GP P
Sbjct: 183 KKLMKQGNGALENSALANGR--GLTGPSP 209


>gi|339250698|ref|XP_003374334.1| DNA mismatch repair protein Msh2 [Trichinella spiralis]
 gi|316969376|gb|EFV53483.1| DNA mismatch repair protein Msh2 [Trichinella spiralis]
          Length = 658

 Score = 85.1 bits (209), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 40/67 (59%), Positives = 51/67 (76%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQL+ LE KF+E +YLS  +R E +++L L+E QVKIWFQNRR K KR + 
Sbjct: 574 RRPRTSFTSQQLVELESKFKEFKYLSRPQRYEIATALSLSENQVKIWFQNRRMKWKRYRM 633

Query: 102 AEIEKIK 108
           AE EK K
Sbjct: 634 AEREKEK 640


>gi|224055077|ref|XP_002196070.1| PREDICTED: homeobox protein DLX-2 [Taeniopygia guttata]
          Length = 271

 Score = 84.7 bits (208), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 66/88 (75%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGDP-PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           +SP  +DS K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 101 ASPANNDSEKEDCEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 160

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 161 AASLGLTQTQVKIWFQNRRSKFKKMWKS 188


>gi|319740945|gb|ADV68993.1| gastrulation brain homeobox transcription factor [Patiria miniata]
          Length = 350

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 51/65 (78%)

Query: 36  RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
           R    +R+ RT FT+ QLL LEK+F  K+YL+++ER++ + SLHL+E QVKIWFQNRRAK
Sbjct: 218 RAGSKSRRRRTAFTSDQLLELEKEFHSKKYLTLSERSQIARSLHLSEVQVKIWFQNRRAK 277

Query: 96  AKRLQ 100
            KRL+
Sbjct: 278 WKRLK 282


>gi|328778787|ref|XP_001121415.2| PREDICTED: hypothetical protein LOC725590 [Apis mellifera]
          Length = 536

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 54/154 (35%), Positives = 72/154 (46%), Gaps = 24/154 (15%)

Query: 19  LLSDSNKGDPPKLNVNLRKH----KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           + S+  K D PK + +        K  RK RT FT  QL +LEK F  ++YLS+ +R E 
Sbjct: 153 VTSNGGKEDDPKSSSSSTLSSAQSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQDRMEL 212

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPG---------- 124
           ++ L LT+TQVK W+QNRR K KR      E +  +  A A    LYG G          
Sbjct: 213 AAKLQLTDTQVKTWYQNRRTKWKRQTIVGFEIMAENNFAVAAFQQLYGSGAAAVPAHPAA 272

Query: 125 ----PSPHLHQ------YFQHASPEALLHHPHPF 148
               P P  H       ++Q AS    L  P P+
Sbjct: 273 GRYWPYPSAHALPANGLFYQQASAAVTLQKPLPY 306


>gi|307179993|gb|EFN68083.1| Homeobox protein B-H1 [Camponotus floridanus]
          Length = 523

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 49/126 (38%), Positives = 68/126 (53%), Gaps = 8/126 (6%)

Query: 19  LLSDSNKGDPPKLNVNLRKH---KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           + S+  K D PK + +       K  RK RT FT  QL +LEK F  ++YLS+ +R E +
Sbjct: 156 VTSNGGKEDDPKSSSSSLGSAQSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQDRMELA 215

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPS-----PHLH 130
           + L LT+TQVK W+QNRR K KR      E +  +  A A    LYG G +     P   
Sbjct: 216 AKLQLTDTQVKTWYQNRRTKWKRQTIVGFEIMAENNFAVAAFQQLYGSGAATIPAHPTAG 275

Query: 131 QYFQHA 136
           +Y+Q+A
Sbjct: 276 RYWQYA 281


>gi|410896808|ref|XP_003961891.1| PREDICTED: homeobox protein Dlx1a-like [Takifugu rubripes]
          Length = 253

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 123 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 182

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     I  +A+A+ R
Sbjct: 183 KKLMKQGSSTIDANALASGR 202


>gi|390332141|ref|XP_003723428.1| PREDICTED: uncharacterized protein LOC100891357 [Strongylocentrotus
           purpuratus]
          Length = 436

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/81 (49%), Positives = 53/81 (65%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
           L     GD   L+        +R+ RT FT+ QLL+LEK+F  K+YL+++ERA  +  L 
Sbjct: 262 LGGKENGDANNLSNGTNGSNKSRRRRTAFTSDQLLALEKEFIGKKYLTLSERAHIARFLQ 321

Query: 80  LTETQVKIWFQNRRAKAKRLQ 100
           L+E QVKIWFQNRRAK KRL+
Sbjct: 322 LSEVQVKIWFQNRRAKWKRLK 342


>gi|348521184|ref|XP_003448106.1| PREDICTED: homeobox protein HMX3-like [Oreochromis niloticus]
          Length = 299

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 46/90 (51%), Positives = 58/90 (64%), Gaps = 2/90 (2%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 168 KKTRTVFSRSQVFQLESTFDVKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 227

Query: 102 AEIEKIKM--SAIAAARPHPLYGPGPSPHL 129
           A++E  ++  SA    R   LY  GP+P L
Sbjct: 228 ADLEAAQIPNSAQRIVRVPILYHEGPTPAL 257


>gi|432923640|ref|XP_004080488.1| PREDICTED: homeobox protein HMX3-B-like [Oryzias latipes]
          Length = 290

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 64/120 (53%), Gaps = 24/120 (20%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 167 KKTRTVFSRSQVFQLESTFDIKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 226

Query: 102 AEIEKIKMSAIAAAR-------------PHPLYGPGPS----------PHLHQYFQHASP 138
           AE+E   MS  AA R             P    GPG +          PH H Y+ +A P
Sbjct: 227 AELEAANMSHAAAQRIVRVPILYHDSGAPETTGGPGTNSPGGQPLLSFPH-HMYYSNAVP 285


>gi|82245461|sp|Q90XN9.1|HMX3B_ORYLA RecName: Full=Homeobox protein HMX3-B; AltName: Full=Homeobox
           protein H6 family member 3-B; AltName: Full=Homeobox
           protein Nkx-5.1.2; AltName: Full=OlNkx-5.1.2
 gi|15637261|gb|AAL04485.1|AF365971_1 transcription factor Nkx5-1.2 [Oryzias latipes]
          Length = 290

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 53/120 (44%), Positives = 64/120 (53%), Gaps = 24/120 (20%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 167 KKTRTVFSRSQVFQLESTFDIKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 226

Query: 102 AEIEKIKMSAIAAAR-------------PHPLYGPGPS----------PHLHQYFQHASP 138
           AE+E   MS  AA R             P    GPG +          PH H Y+ +A P
Sbjct: 227 AELEAANMSHAAAQRIVRVPILYHDSGAPEATGGPGTNSPGGQPLLSFPH-HMYYSNAVP 285


>gi|380022566|ref|XP_003695113.1| PREDICTED: homeobox protein Hox-B3-like [Apis florea]
          Length = 170

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 41/64 (64%), Positives = 52/64 (81%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LEK+FR+ +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 46  RRPRTAFTSQQLLELEKQFRQNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 105

Query: 102 AEIE 105
           A+ E
Sbjct: 106 AQQE 109


>gi|118403499|ref|NP_001072829.1| homeobox protein HMX3 [Xenopus (Silurana) tropicalis]
 gi|123908806|sp|Q0P4W6.1|HMX3_XENTR RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
           H6 family member 3; AltName: Full=Homeobox protein
           Nkx-5.1
 gi|112418486|gb|AAI21875.1| H6 family homeobox 3 [Xenopus (Silurana) tropicalis]
          Length = 306

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 6/101 (5%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKP------RTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +  K D    +   R+  P++KP      RT F+  Q+  LE  F  K+YLS +ERA  +
Sbjct: 153 EEGKKDDSGEDWKKREESPDKKPCRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 212

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           +SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 213 ASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 253


>gi|109980|pir||S19163 homeotic protein distal-less - mouse
          Length = 159

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 63/87 (72%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           ++  N +K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWF
Sbjct: 21  EVRFNGQKGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWF 80

Query: 90  QNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           QN+R+K K+L +     ++ SA+A  R
Sbjct: 81  QNKRSKFKKLMKQGGAALEGSALANGR 107


>gi|148229848|ref|NP_001079226.1| homeobox protein HMX3 [Xenopus laevis]
 gi|82243609|sp|Q8JJ64.1|HMX3_XENLA RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
           H6 family member 3; AltName: Full=Homeobox protein
           Nkx-5.1; Short=X-nkx-5.1
 gi|20385194|gb|AAM21210.1|AF368235_1 Nkx-5.1 [Xenopus laevis]
 gi|213624988|gb|AAI69574.1| Nkx-5.1 homeodomain protein [Xenopus laevis]
 gi|213627760|gb|AAI69576.1| Nkx-5.1 homeodomain protein [Xenopus laevis]
          Length = 306

 Score = 84.3 bits (207), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 6/101 (5%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKP------RTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +  K D    +   R+  P++KP      RT F+  Q+  LE  F  K+YLS +ERA  +
Sbjct: 153 EEGKKDDSGEDWKKREDSPDKKPCRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 212

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           +SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 213 ASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 253


>gi|350415989|ref|XP_003490812.1| PREDICTED: hypothetical protein LOC100740223 [Bombus impatiens]
          Length = 526

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 63/130 (48%), Gaps = 20/130 (15%)

Query: 39  KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           K  RK RT FT  QL +LEK F  ++YLS+ +R E ++ L LT+TQVK W+QNRR K KR
Sbjct: 171 KKQRKARTAFTDHQLQTLEKSFERQKYLSVQDRMELAAKLQLTDTQVKTWYQNRRTKWKR 230

Query: 99  LQEAEIEKIKMSAIAAARPHPLYGPG--------------PSPHLHQ------YFQHASP 138
                 E +  +  A A    LYG G              P P  H       ++Q AS 
Sbjct: 231 QTIVGFEIMAENNFAVAAFQQLYGSGAAAVPAHPAAGRYWPYPSAHALPTNGLFYQQASA 290

Query: 139 EALLHHPHPF 148
              L  P P+
Sbjct: 291 AVTLQKPLPY 300


>gi|340711425|ref|XP_003394276.1| PREDICTED: hypothetical protein LOC100651071 [Bombus terrestris]
          Length = 526

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 63/130 (48%), Gaps = 20/130 (15%)

Query: 39  KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           K  RK RT FT  QL +LEK F  ++YLS+ +R E ++ L LT+TQVK W+QNRR K KR
Sbjct: 171 KKQRKARTAFTDHQLQTLEKSFERQKYLSVQDRMELAAKLQLTDTQVKTWYQNRRTKWKR 230

Query: 99  LQEAEIEKIKMSAIAAARPHPLYGPG--------------PSPHLHQ------YFQHASP 138
                 E +  +  A A    LYG G              P P  H       ++Q AS 
Sbjct: 231 QTIVGFEIMAENNFAVAAFQQLYGSGAAAVPAHPAAGRYWPYPSAHALPTNGLFYQQASA 290

Query: 139 EALLHHPHPF 148
              L  P P+
Sbjct: 291 AVTLQKPLPY 300


>gi|18858551|ref|NP_571386.1| homeobox protein Dlx2a [Danio rerio]
 gi|1708243|sp|P50574.1|DLX2A_DANRE RecName: Full=Homeobox protein Dlx2a; Short=DLX-2; AltName:
           Full=Distal-less homeobox gene 2a
 gi|460127|gb|AAA19826.1| Dlx2 homeodomain protein [Danio rerio]
          Length = 270

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/107 (45%), Positives = 73/107 (68%), Gaps = 2/107 (1%)

Query: 15  LSSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAE 73
            SSP  +D+ K +  P++ +   K K  RKPRT ++T QL +L+++F++ QYL++ ERAE
Sbjct: 96  CSSPTPADAEKEEREPEIRMVNGKPKKVRKPRTIYSTFQLAALQRRFQKTQYLALPERAE 155

Query: 74  FSSSLHLTETQVKIWFQNRRAKAKRL-QEAEIEKIKMSAIAAARPHP 119
            ++SL LT+TQVKIWFQNRR+K K+L +  EI   +  A   + PHP
Sbjct: 156 LAASLGLTQTQVKIWFQNRRSKFKKLWKSGEIPPEQHVASGESPPHP 202


>gi|340718574|ref|XP_003397740.1| PREDICTED: homeobox protein rough-like [Bombus terrestris]
          Length = 308

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 63/89 (70%), Gaps = 2/89 (2%)

Query: 36  RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
           RK    R+ RT F+ +Q L LE ++R  +Y+S   R E ++SLHLTETQ+KIWFQNRRAK
Sbjct: 167 RKEGRPRRQRTTFSGEQTLRLEVEYRRGEYISRGRRFELATSLHLTETQIKIWFQNRRAK 226

Query: 96  AKRLQEAEIEK-IKMSAIAAARPH-PLYG 122
            KR+++A++++  +  AI++   + P+YG
Sbjct: 227 DKRIEKAQLDQYYRNFAISSGMINLPIYG 255


>gi|350401812|ref|XP_003486269.1| PREDICTED: homeobox protein rough-like [Bombus impatiens]
          Length = 308

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 63/89 (70%), Gaps = 2/89 (2%)

Query: 36  RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
           RK    R+ RT F+ +Q L LE ++R  +Y+S   R E ++SLHLTETQ+KIWFQNRRAK
Sbjct: 167 RKEGRPRRQRTTFSGEQTLRLEVEYRRGEYISRGRRFELATSLHLTETQIKIWFQNRRAK 226

Query: 96  AKRLQEAEIEK-IKMSAIAAARPH-PLYG 122
            KR+++A++++  +  AI++   + P+YG
Sbjct: 227 DKRIEKAQLDQYYRNFAISSGMINLPIYG 255


>gi|157987313|gb|ABW07818.1| homeobox transcription factor [Danio rerio]
          Length = 297

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/111 (45%), Positives = 65/111 (58%), Gaps = 4/111 (3%)

Query: 10  NEILILSSPLLSDSNKG--DPPKLNVNLRKHKPNRK--PRTPFTTQQLLSLEKKFREKQY 65
           +EI++  S       +G  D  K + +    KP RK   RT F+  Q+  LE  F  K+Y
Sbjct: 135 DEIVLEESDTEDGKKEGSIDDWKKSDDGADKKPCRKKKTRTVFSRSQVFQLESTFDMKRY 194

Query: 66  LSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           LS +ERA  ++SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 195 LSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 245


>gi|307210509|gb|EFN87012.1| Homeobox protein B-H1 [Harpegnathos saltator]
          Length = 513

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 49/130 (37%), Positives = 64/130 (49%), Gaps = 20/130 (15%)

Query: 39  KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           K  RK RT FT  QL +LEK F  ++YLS+ +R E ++ L LT+TQVK W+QNRR K KR
Sbjct: 170 KKQRKARTAFTDHQLQTLEKSFERQKYLSVQDRMELAAKLQLTDTQVKTWYQNRRTKWKR 229

Query: 99  LQEAEIEKIKMSAIAAARPHPLYGPGPS--------------PHLHQ------YFQHASP 138
                 E +  +  A A    LYG G +              P  H       ++Q AS 
Sbjct: 230 QTIVGFEIMAENNFAVAAFQQLYGSGAATIPAHPAAGRYWQYPGAHTLPTNGFFYQQASA 289

Query: 139 EALLHHPHPF 148
            A L  P P+
Sbjct: 290 AATLQKPLPY 299


>gi|395739259|ref|XP_002818730.2| PREDICTED: LOW QUALITY PROTEIN: homeobox protein GBX-1 [Pongo
           abelii]
          Length = 367

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 240 LKGSLGTGAEEGAPVTAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 298

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 299 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 328


>gi|242004411|ref|XP_002423083.1| Homeobox protein Hox-A2, putative [Pediculus humanus corporis]
 gi|212506014|gb|EEB10345.1| Homeobox protein Hox-A2, putative [Pediculus humanus corporis]
          Length = 285

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 42/82 (51%), Positives = 56/82 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LEK+F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 27  RRPRTAFTSQQLLELEKQFKHNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 86

Query: 102 AEIEKIKMSAIAAARPHPLYGP 123
           A+ E  +    +  +   L  P
Sbjct: 87  AQQEAKQKEECSQTKSKSLNSP 108


>gi|348501770|ref|XP_003438442.1| PREDICTED: NK1 transcription factor-related protein 2-like
           [Oreochromis niloticus]
          Length = 266

 Score = 83.6 bits (205), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 48/124 (38%), Positives = 67/124 (54%), Gaps = 6/124 (4%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+   
Sbjct: 130 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 189

Query: 102 AEIEKIK--MSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHHPH---PFSALLG-RH 155
                ++   +++    P+P      S   HQ F + +   ++ H     P S   G  H
Sbjct: 190 GADSTLQPGSNSLINVSPNPATCGSSSASFHQTFSNFTSGNVIFHAAGGVPLSTTGGLLH 249

Query: 156 PAMA 159
           P M+
Sbjct: 250 PFMS 253


>gi|198462684|ref|XP_001352515.2| GA20934 [Drosophila pseudoobscura pseudoobscura]
 gi|198150934|gb|EAL30012.2| GA20934 [Drosophila pseudoobscura pseudoobscura]
          Length = 575

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LEK+F++ +YLS  +R E +S L L+ETQVKIWFQNRR K KR +
Sbjct: 485 TRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSK 544

Query: 101 EAEIE 105
           +A+ E
Sbjct: 545 KAQQE 549


>gi|348585807|ref|XP_003478662.1| PREDICTED: homeobox protein DLX-1-like [Cavia porcellus]
          Length = 255

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|51105919|gb|EAL24503.1| similar to gastrulation brain homeobox 1 [Homo sapiens]
          Length = 357

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 230 LKGSLGTGAEEGAPVTAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 288

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 289 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 318


>gi|383848550|ref|XP_003699912.1| PREDICTED: uncharacterized protein LOC100883050 [Megachile
           rotundata]
          Length = 523

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 45/108 (41%), Positives = 61/108 (56%), Gaps = 4/108 (3%)

Query: 19  LLSDSNKGDPPKLN----VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           + S+  K D PK +    +   + K  RK RT FT  QL +LEK F  ++YLS+ +R E 
Sbjct: 146 VTSNGGKEDDPKGSSSGTLGSAQSKKQRKARTAFTDNQLQTLEKSFERQKYLSVQDRMEL 205

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYG 122
           ++ LHLT+TQVK W+QNRR K KR      E +  +  A A    LYG
Sbjct: 206 AAKLHLTDTQVKTWYQNRRTKWKRQTIVGFEIMAENNFAVAAFQQLYG 253


>gi|149642883|ref|NP_001092487.1| homeobox protein DLX-1 [Bos taurus]
 gi|148878446|gb|AAI46097.1| DLX1 protein [Bos taurus]
 gi|296490641|tpg|DAA32754.1| TPA: distal-less homeobox 1 [Bos taurus]
          Length = 255

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|406855435|ref|NP_001258382.1| gastrulation brain homeobox 1 [Rattus norvegicus]
          Length = 425

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 298 LKGSLGTGAEEGTPVATGVTTPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 356

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 357 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 386


>gi|432107333|gb|ELK32747.1| Homeobox protein DLX-1 [Myotis davidii]
          Length = 255

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|74004600|ref|XP_860852.1| PREDICTED: homeobox protein DLX-1 isoform 5 [Canis lupus
           familiaris]
 gi|149730728|ref|XP_001498994.1| PREDICTED: homeobox protein DLX-1-like isoform 1 [Equus caballus]
 gi|395857040|ref|XP_003800921.1| PREDICTED: homeobox protein DLX-1 [Otolemur garnettii]
          Length = 255

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|64225290|ref|NP_835221.2| homeobox protein DLX-1 isoform 1 [Homo sapiens]
 gi|386780955|ref|NP_001247548.1| distal-less homeobox 1 [Macaca mulatta]
 gi|114581773|ref|XP_001146865.1| PREDICTED: homeobox protein DLX-1 isoform 4 [Pan troglodytes]
 gi|297668849|ref|XP_002812635.1| PREDICTED: homeobox protein DLX-1 [Pongo abelii]
 gi|332209317|ref|XP_003253758.1| PREDICTED: homeobox protein DLX-1 isoform 1 [Nomascus leucogenys]
 gi|332209319|ref|XP_003253759.1| PREDICTED: homeobox protein DLX-1 isoform 2 [Nomascus leucogenys]
 gi|332815218|ref|XP_003309463.1| PREDICTED: homeobox protein DLX-1 [Pan troglodytes]
 gi|397507670|ref|XP_003824311.1| PREDICTED: homeobox protein DLX-1 [Pan paniscus]
 gi|402888632|ref|XP_003907660.1| PREDICTED: homeobox protein DLX-1 [Papio anubis]
 gi|116241335|sp|P56177.3|DLX1_HUMAN RecName: Full=Homeobox protein DLX-1
 gi|37955822|gb|AAO91939.1| transcription factor DLX1 [Homo sapiens]
 gi|119631590|gb|EAX11185.1| distal-less homeobox 1, isoform CRA_e [Homo sapiens]
 gi|119631592|gb|EAX11187.1| distal-less homeobox 1, isoform CRA_e [Homo sapiens]
 gi|261858272|dbj|BAI45658.1| distal-less homeobox 1 [synthetic construct]
 gi|355750622|gb|EHH54949.1| hypothetical protein EGM_04060 [Macaca fascicularis]
 gi|380810228|gb|AFE76989.1| homeobox protein DLX-1 isoform 1 [Macaca mulatta]
 gi|410215158|gb|JAA04798.1| distal-less homeobox 1 [Pan troglodytes]
 gi|410253920|gb|JAA14927.1| distal-less homeobox 1 [Pan troglodytes]
 gi|410294610|gb|JAA25905.1| distal-less homeobox 1 [Pan troglodytes]
 gi|410331839|gb|JAA34866.1| distal-less homeobox 1 [Pan troglodytes]
          Length = 255

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|311272633|ref|XP_003133523.1| PREDICTED: homeobox protein DLX-1-like isoform 1 [Sus scrofa]
          Length = 255

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|426337702|ref|XP_004032837.1| PREDICTED: homeobox protein DLX-1 isoform 1 [Gorilla gorilla
           gorilla]
 gi|426337704|ref|XP_004032838.1| PREDICTED: homeobox protein DLX-1 isoform 2 [Gorilla gorilla
           gorilla]
          Length = 255

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|351695653|gb|EHA98571.1| Homeobox protein DLX-1 [Heterocephalus glaber]
          Length = 255

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|328723432|ref|XP_003247845.1| PREDICTED: homeobox protein MOX-2-like [Acyrthosiphon pisum]
          Length = 189

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 40/64 (62%), Positives = 52/64 (81%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LEK+FR+ +YLS  +R E +++L LTETQVKIWFQNRR K KR ++
Sbjct: 30  RRPRTAFTSQQLLELEKQFRQNKYLSRPKRFEVATNLMLTETQVKIWFQNRRMKWKRSKK 89

Query: 102 AEIE 105
           A+ E
Sbjct: 90  AQQE 93


>gi|6753644|ref|NP_034183.1| homeobox protein DLX-1 [Mus musculus]
 gi|209915607|ref|NP_001094001.1| homeobox protein DLX-1 [Rattus norvegicus]
 gi|2495275|sp|Q64317.1|DLX1_MOUSE RecName: Full=Homeobox protein DLX-1
 gi|1477586|gb|AAB40899.1| DLX-1 [Mus musculus]
 gi|1477588|gb|AAB40900.1| DLX-1 [Mus musculus]
 gi|50927502|gb|AAH79609.1| Distal-less homeobox 1 [Mus musculus]
 gi|148695144|gb|EDL27091.1| distal-less homeobox 1, isoform CRA_a [Mus musculus]
 gi|149022210|gb|EDL79104.1| distal-less homeobox 1 [Rattus norvegicus]
          Length = 255

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|357621727|gb|EHJ73462.1| hypothetical protein KGM_12980 [Danaus plexippus]
          Length = 412

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 43/68 (63%), Positives = 54/68 (79%), Gaps = 1/68 (1%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LEK+FR  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 255 RRPRTAFTSQQLLELEKQFRMNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 314

Query: 102 AEIE-KIK 108
           A+ + KIK
Sbjct: 315 AQQDTKIK 322


>gi|195492695|ref|XP_002094102.1| GE21647 [Drosophila yakuba]
 gi|194180203|gb|EDW93814.1| GE21647 [Drosophila yakuba]
          Length = 532

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LEK+F++ +YLS  +R E +S L L+ETQVKIWFQNRR K KR +
Sbjct: 447 TRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSK 506

Query: 101 EAEIE 105
           +A+ E
Sbjct: 507 KAQQE 511


>gi|348519689|ref|XP_003447362.1| PREDICTED: homeobox protein Dlx1a-like [Oreochromis niloticus]
 gi|306431999|emb|CBJ55488.1| dlx1a protein [Haplochromis burtoni]
          Length = 253

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 58/80 (72%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 123 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 182

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     I  +A+A  R
Sbjct: 183 KKLMKQGGGTIDSNALATGR 202


>gi|296204524|ref|XP_002749390.1| PREDICTED: homeobox protein DLX-1 isoform 1 [Callithrix jacchus]
 gi|403258775|ref|XP_003921921.1| PREDICTED: homeobox protein DLX-1 isoform 1 [Saimiri boliviensis
           boliviensis]
 gi|403258777|ref|XP_003921922.1| PREDICTED: homeobox protein DLX-1 isoform 2 [Saimiri boliviensis
           boliviensis]
          Length = 255

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|291391739|ref|XP_002712335.1| PREDICTED: distal-less homeobox 1-like [Oryctolagus cuniculus]
          Length = 255

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALESSALANGR 203


>gi|344235679|gb|EGV91782.1| Homeobox protein GBX-1 [Cricetulus griseus]
          Length = 202

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 59/90 (65%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + +++G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 75  LKGSLGTGADEGAPVATGVTTPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 133

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 134 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 163


>gi|440546378|dbj|BAG14362.2| homeobox-containing Dlx2 [Scyliorhinus torazame]
          Length = 266

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 42/92 (45%), Positives = 66/92 (71%), Gaps = 1/92 (1%)

Query: 16  SSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +SP  +D  K   P++ V   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE +
Sbjct: 96  NSPANTDVEKDCEPEIRVVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 155

Query: 76  SSLHLTETQVKIWFQNRRAKAKRL-QEAEIEK 106
           +S+ LT+TQVKIWFQNRR+K K++ +  E+ K
Sbjct: 156 ASMGLTQTQVKIWFQNRRSKFKKMWKNGEMSK 187


>gi|355564973|gb|EHH21462.1| hypothetical protein EGK_04535 [Macaca mulatta]
          Length = 255

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|194751121|ref|XP_001957875.1| GF23802 [Drosophila ananassae]
 gi|190625157|gb|EDV40681.1| GF23802 [Drosophila ananassae]
          Length = 532

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LEK+F++ +YLS  +R E +S L L+ETQVKIWFQNRR K KR +
Sbjct: 450 TRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSK 509

Query: 101 EAEIE 105
           +A+ E
Sbjct: 510 KAQQE 514


>gi|410968844|ref|XP_003990909.1| PREDICTED: homeobox protein DLX-1 isoform 1 [Felis catus]
          Length = 255

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|18858815|ref|NP_571709.1| homeobox protein HMX3 [Danio rerio]
 gi|10444257|gb|AAG17822.1|AF288211_1 Nkx5-1 [Danio rerio]
          Length = 297

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 50/111 (45%), Positives = 65/111 (58%), Gaps = 4/111 (3%)

Query: 10  NEILILSSPLLSDSNKG--DPPKLNVNLRKHKPNRK--PRTPFTTQQLLSLEKKFREKQY 65
           +E+++  S       +G  D  K + +    KP RK   RT F+  Q+  LE  F  K+Y
Sbjct: 135 DEVVLEESDTEDGKKEGGIDDWKKSDDGADKKPCRKKKTRTVFSRSQVFQLESTFDMKRY 194

Query: 66  LSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           LS +ERA  ++SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 195 LSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 245


>gi|18419434|gb|AAL69325.1|AF404825_1 distal-less [Bicyclus anynana]
          Length = 358

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 27  DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           D P L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVK
Sbjct: 117 DDPGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVK 175

Query: 87  IWFQNRRAKAKRLQEA 102
           IWFQNRR+K K++ +A
Sbjct: 176 IWFQNRRSKYKKMMKA 191


>gi|46195450|ref|NP_990259.1| motor neuron and pancreas homeobox protein 1 [Gallus gallus]
 gi|3777537|gb|AAC64925.1| homeodomain protein [Gallus gallus]
          Length = 349

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 48/92 (52%), Positives = 57/92 (61%), Gaps = 8/92 (8%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR--- 98
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR   
Sbjct: 191 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRQKK 250

Query: 99  -----LQEAEIEKIKMSAIAAARPHPLYGPGP 125
                 QEAE EK        + P  L  PGP
Sbjct: 251 AKEQAAQEAENEKGGGGGEDKSGPRELLLPGP 282


>gi|68084732|gb|AAH36189.2| Distal-less homeobox 1 [Homo sapiens]
          Length = 255

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 58/80 (72%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT + + QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYCSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|410895429|ref|XP_003961202.1| PREDICTED: homeobox protein HMX3-B-like [Takifugu rubripes]
          Length = 289

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 47/95 (49%), Positives = 59/95 (62%), Gaps = 1/95 (1%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           D  +G   +L+   RK    +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLT
Sbjct: 147 DDWRGKTDELDAE-RKPCRKKKTRTVFSRSQVFQLESTFDIKRYLSSSERAGLAASLHLT 205

Query: 82  ETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           ETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 206 ETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 240


>gi|62822183|gb|AAY14732.1| unknown [Homo sapiens]
 gi|158254438|dbj|BAF83192.1| unnamed protein product [Homo sapiens]
          Length = 235

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 104 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 163

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 164 KKLMKQGGAALEGSALANGR 183


>gi|195325849|ref|XP_002029643.1| GM25007 [Drosophila sechellia]
 gi|194118586|gb|EDW40629.1| GM25007 [Drosophila sechellia]
          Length = 523

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LEK+F++ +YLS  +R E +S L L+ETQVKIWFQNRR K KR +
Sbjct: 439 TRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSK 498

Query: 101 EAEIE 105
           +A+ E
Sbjct: 499 KAQQE 503


>gi|837339|gb|AAB32450.1| Distal-less Dll limb-patterning gene product [Junonia
           coenia=buckeye, Peptide, 197 aa]
          Length = 197

 Score = 83.2 bits (204), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 27  DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           D P L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVK
Sbjct: 117 DDPGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVK 175

Query: 87  IWFQNRRAKAKRLQEA 102
           IWFQNRR+K K++ +A
Sbjct: 176 IWFQNRRSKYKKMMKA 191


>gi|440912792|gb|ELR62327.1| Homeobox protein DLX-1, partial [Bos grunniens mutus]
          Length = 257

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 125 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 184

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 185 KKLMKQGGAALEGSALANGR 204


>gi|208401106|gb|ACI26669.1| NK-like homeobox protein 1b [Capitella teleta]
          Length = 165

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 53/75 (70%), Gaps = 2/75 (2%)

Query: 24 NKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTET 83
          +KGD   L    R  KP R+ RT FT +QL++LE KF++ +YLS+ ER   + SL+LTET
Sbjct: 17 DKGDGSDLQDGGRG-KP-RRARTAFTYEQLVALENKFKQTRYLSVCERLNLALSLNLTET 74

Query: 84 QVKIWFQNRRAKAKR 98
          QVKIWFQNRR K K+
Sbjct: 75 QVKIWFQNRRTKWKK 89


>gi|21356351|ref|NP_648164.1| extra-extra [Drosophila melanogaster]
 gi|7295179|gb|AAF50503.1| extra-extra [Drosophila melanogaster]
 gi|19527577|gb|AAL89903.1| RE39081p [Drosophila melanogaster]
          Length = 525

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LEK+F++ +YLS  +R E +S L L+ETQVKIWFQNRR K KR +
Sbjct: 439 TRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSK 498

Query: 101 EAEIE 105
           +A+ E
Sbjct: 499 KAQQE 503


>gi|195379072|ref|XP_002048305.1| GJ13893 [Drosophila virilis]
 gi|194155463|gb|EDW70647.1| GJ13893 [Drosophila virilis]
          Length = 557

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LEK+F++ +YLS  +R E +S L L+ETQVKIWFQNRR K KR +
Sbjct: 469 TRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSK 528

Query: 101 EAEIE 105
           +A+ E
Sbjct: 529 KAQQE 533


>gi|13507110|gb|AAK28445.1|AF288762_1 transcription factor Gbx2 [Danio rerio]
          Length = 341

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 240 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 299

Query: 101 EAEI 104
              +
Sbjct: 300 AGNV 303


>gi|23308657|ref|NP_694496.1| homeobox protein GBX-2 [Danio rerio]
 gi|19912276|dbj|BAB88556.1| transcription factor Gbx2 [Danio rerio]
 gi|37590815|gb|AAH59413.1| Gastrulation brain homeo box 2 [Danio rerio]
          Length = 342

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 241 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 300

Query: 101 EAEI 104
              +
Sbjct: 301 AGNV 304


>gi|18858549|ref|NP_571380.1| homeobox protein Dlx1a [Danio rerio]
 gi|2842747|sp|Q98875.1|DLX1A_DANRE RecName: Full=Homeobox protein Dlx1a; Short=DLX-1; AltName:
           Full=Distal-less homeobox gene 1a
 gi|1620514|gb|AAC60025.1| Dlx1 [Danio rerio]
 gi|62202599|gb|AAH93139.1| Distal-less homeobox gene 1a [Danio rerio]
          Length = 252

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 58/80 (72%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     I  +A+A  R
Sbjct: 184 KKLMKQGGGTIDTNALANGR 203


>gi|25990724|gb|AAN76664.1|AF422807_1 Gbx2 [Danio rerio]
          Length = 342

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 241 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 300

Query: 101 EAEI 104
              +
Sbjct: 301 AGNV 304


>gi|301785097|ref|XP_002927962.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein DLX-1-like
           [Ailuropoda melanoleuca]
          Length = 255

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|195441698|ref|XP_002068639.1| GK20585 [Drosophila willistoni]
 gi|194164724|gb|EDW79625.1| GK20585 [Drosophila willistoni]
          Length = 578

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LEK+F++ +YLS  +R E +S L L+ETQVKIWFQNRR K KR +
Sbjct: 486 TRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSK 545

Query: 101 EAEIE 105
           +A+ E
Sbjct: 546 KAQQE 550


>gi|395838373|ref|XP_003792090.1| PREDICTED: homeobox protein GBX-1 [Otolemur garnettii]
          Length = 357

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 230 LKGSLGTGAEEGAPVATGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 288

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 289 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 318


>gi|391329564|ref|XP_003739241.1| PREDICTED: homeobox protein HMX3-like [Metaseiulus occidentalis]
          Length = 424

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/68 (60%), Positives = 47/68 (69%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT FT  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 224 KKTRTVFTRSQVFQLESTFDCKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 283

Query: 102 AEIEKIKM 109
           AEIE   M
Sbjct: 284 AEIEANSM 291


>gi|47934206|gb|AAT39558.1| Distal-less [Manduca sexta]
          Length = 194

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 27  DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           D P L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVK
Sbjct: 117 DDPGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVK 175

Query: 87  IWFQNRRAKAKRLQEA 102
           IWFQNRR+K K++ +A
Sbjct: 176 IWFQNRRSKYKKMMKA 191


>gi|157928216|gb|ABW03404.1| distal-less homeobox 1 [synthetic construct]
 gi|157928908|gb|ABW03739.1| distal-less homeobox 1 [synthetic construct]
          Length = 235

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 58/80 (72%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT + + QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 104 KGKKIRKPRTIYCSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 163

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 164 KKLMKQGGAALEGSALANGR 183


>gi|83318923|emb|CAJ38799.1| distalless, Dlx-1 [Platynereis dumerilii]
          Length = 367

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 65/108 (60%), Gaps = 11/108 (10%)

Query: 2   VDLPQLF-----LNEILILSSPLLSDS--NKGDPP---KLNVNLRKHKPNRKPRTPFTTQ 51
            DLP  +     L    I    L  DS  N  + P   +L VN  K K  RKPRT +++ 
Sbjct: 115 YDLPNYYSSYDKLENKYIYRKGLFEDSPPNSDEKPSMDELRVN-GKGKKMRKPRTIYSSL 173

Query: 52  QLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
           QL  L K+F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K K+L
Sbjct: 174 QLQQLNKRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKL 221


>gi|291397374|ref|XP_002715117.1| PREDICTED: gastrulation brain homeo box 1 [Oryctolagus cuniculus]
          Length = 188

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 61  LKGSLATGAEEGAPVAAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 119

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 120 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 149


>gi|11225250|gb|AAG33015.1|AF308821_1 Mnx homeodomain protein [Branchiostoma floridae]
          Length = 296

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 51/65 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LEK F+E +YLS  +R E +++L LTETQVKIWFQNRR K KR +
Sbjct: 155 TRRPRTAFTSQQLLELEKYFKENKYLSRPKRFEVATALMLTETQVKIWFQNRRMKWKRSK 214

Query: 101 EAEIE 105
           +A+ E
Sbjct: 215 KAKDE 219


>gi|354478326|ref|XP_003501366.1| PREDICTED: homeobox protein GBX-1-like [Cricetulus griseus]
          Length = 306

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 59/90 (65%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + +++G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 179 LKGSLGTGADEGAPVATGVTTPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 237

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 238 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 267


>gi|242017971|ref|XP_002429457.1| Homeobox protein Hmx, putative [Pediculus humanus corporis]
 gi|212514389|gb|EEB16719.1| Homeobox protein Hmx, putative [Pediculus humanus corporis]
          Length = 360

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/110 (44%), Positives = 60/110 (54%), Gaps = 15/110 (13%)

Query: 39  KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           K  +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR
Sbjct: 220 KRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKR 279

Query: 99  LQEAEIEKIKMSAIAA--ARPHPLYGPGPSPHLHQYFQHASPEALLHHPH 146
              AE+E   M+  A    R   LY             H +   L+HH H
Sbjct: 280 QLAAELEAANMAHAAQRLVRVPILY-------------HEAAGGLIHHSH 316


>gi|359323208|ref|XP_853978.3| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC611245
           [Canis lupus familiaris]
          Length = 1022

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 60/101 (59%), Gaps = 5/101 (4%)

Query: 17  SPLLSDSNKG-DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +P   D  KG + P      RK    +K RT F+  Q+  LE  F  K+YLS +ERA  +
Sbjct: 872 TPGAEDWKKGAESPDKKPACRK----KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 927

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           +SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 928 ASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 968


>gi|260794346|ref|XP_002592170.1| motor neuron homeobox [Branchiostoma floridae]
 gi|229277385|gb|EEN48181.1| motor neuron homeobox [Branchiostoma floridae]
          Length = 296

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 40/65 (61%), Positives = 51/65 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LEK F+E +YLS  +R E +++L LTETQVKIWFQNRR K KR +
Sbjct: 155 TRRPRTAFTSQQLLELEKYFKENKYLSRPKRFEVATALMLTETQVKIWFQNRRMKWKRSK 214

Query: 101 EAEIE 105
           +A+ E
Sbjct: 215 KAKDE 219


>gi|355705330|gb|AES02281.1| msh homeobox 2 [Mustela putorius furo]
          Length = 98

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/43 (90%), Positives = 43/43 (100%)

Query: 69  AERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSA 111
           AERAEFSSSL+LTETQVKIWFQNRRAKAKRLQEAE+EK+KM+A
Sbjct: 1   AERAEFSSSLNLTETQVKIWFQNRRAKAKRLQEAELEKLKMAA 43


>gi|444731165|gb|ELW71527.1| Homeobox protein DLX-1 [Tupaia chinensis]
          Length = 249

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALEGSALANGR 203


>gi|345328086|ref|XP_003431234.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein DLX-1-like
           [Ornithorhynchus anatinus]
          Length = 255

 Score = 83.2 bits (204), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALESSALANGR 203


>gi|301759391|ref|XP_002915555.1| PREDICTED: homeobox protein GBX-1-like, partial [Ailuropoda
           melanoleuca]
          Length = 333

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 206 LKGSLGTGAEEGAPVAAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 264

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 265 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 294


>gi|281339855|gb|EFB15439.1| hypothetical protein PANDA_003545 [Ailuropoda melanoleuca]
          Length = 325

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 198 LKGSLGTGAEEGAPVAAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 256

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 257 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 286


>gi|345781279|ref|XP_853664.2| PREDICTED: homeobox protein GBX-1 [Canis lupus familiaris]
          Length = 232

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 105 LKGSLGTGAEEGAPVAAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 163

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 164 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 193


>gi|126326315|ref|XP_001368011.1| PREDICTED: homeobox protein DLX-1-like [Monodelphis domestica]
 gi|395519748|ref|XP_003764004.1| PREDICTED: homeobox protein DLX-1 [Sarcophilus harrisii]
          Length = 255

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 184 KKLMKQGGAALESSALANGR 203


>gi|161612278|gb|AAI55954.1| Unknown (protein for IMAGE:7974039) [Xenopus laevis]
          Length = 160

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 47/101 (46%), Positives = 60/101 (59%), Gaps = 6/101 (5%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKP------RTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +  K D    +   R+  P++KP      RT F+  Q+  LE  F  K+YLS +ERA  +
Sbjct: 7   EEGKKDDSGEDWKKREDSPDKKPCRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 66

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           +SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 67  ASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 107


>gi|332243722|ref|XP_003271023.1| PREDICTED: homeobox protein GBX-1 [Nomascus leucogenys]
          Length = 397

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 270 LKGSLGTGAEEGAPVTAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 328

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 329 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 358


>gi|194865361|ref|XP_001971391.1| GG14457 [Drosophila erecta]
 gi|190653174|gb|EDV50417.1| GG14457 [Drosophila erecta]
          Length = 524

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LEK+F++ +YLS  +R E +S L L+ETQVKIWFQNRR K KR +
Sbjct: 441 TRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSK 500

Query: 101 EAEIE 105
           +A+ E
Sbjct: 501 KAQQE 505


>gi|328777191|ref|XP_003249297.1| PREDICTED: homeobox protein rough-like [Apis mellifera]
          Length = 309

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 62/89 (69%), Gaps = 2/89 (2%)

Query: 36  RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
           RK    R+ RT F+ +Q L LE ++R  +Y+S   R E ++SLHLTETQ+KIWFQNRRAK
Sbjct: 167 RKEGRPRRQRTTFSGEQTLRLEVEYRRGEYISRGRRFELATSLHLTETQIKIWFQNRRAK 226

Query: 96  AKRLQEAEIEK-IKMSAIAAARPH-PLYG 122
            KR+++A++++  +  AI+    + P+YG
Sbjct: 227 DKRIEKAQLDQYYRNFAISNGMINLPIYG 255


>gi|406587|emb|CAA53079.1| NK-type homeobox [Mus musculus]
          Length = 458

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 51/76 (67%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR  
Sbjct: 329 KKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQL 388

Query: 101 EAEIEKIKMSAIAAAR 116
            AE+E   +S  AA R
Sbjct: 389 AAELEAANLSHAAAQR 404


>gi|390337673|ref|XP_782803.2| PREDICTED: uncharacterized protein LOC577485 [Strongylocentrotus
           purpuratus]
          Length = 383

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 51/63 (80%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LE++FR+ +YLS  +R E ++SL LTETQVKIWFQNRR K KR +
Sbjct: 202 TRRPRTAFTSQQLLELEQQFRKNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSK 261

Query: 101 EAE 103
           +A+
Sbjct: 262 KAK 264


>gi|300795593|ref|NP_001178675.1| homeobox protein DLX-2 [Rattus norvegicus]
 gi|149022211|gb|EDL79105.1| distal-less homeobox 2 [Rattus norvegicus]
          Length = 332

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 67/88 (76%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP+ ++ +K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 129 SSPVNNEPDKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 188

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 189 AASLGLTQTQVKIWFQNRRSKFKKMWKS 216


>gi|291223907|ref|XP_002731951.1| PREDICTED: H6 homeobox 1-like [Saccoglossus kowalevskii]
          Length = 306

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 45/94 (47%), Positives = 60/94 (63%), Gaps = 1/94 (1%)

Query: 21  SDSNKGDPPKLNVNLR-KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
           SD+N+ +  +   N   K++  +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLH
Sbjct: 160 SDTNESNGVENGSNSENKNRRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLH 219

Query: 80  LTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIA 113
           LTETQVKIWFQNRR K KR   AE+E   M+  A
Sbjct: 220 LTETQVKIWFQNRRNKWKRQLAAELEAANMAHAA 253


>gi|149588930|ref|NP_001092304.1| homeobox protein GBX-1 [Homo sapiens]
 gi|332870059|ref|XP_001138059.2| PREDICTED: homeobox protein GBX-1 [Pan troglodytes]
 gi|115502392|sp|Q14549.2|GBX1_HUMAN RecName: Full=Homeobox protein GBX-1; AltName: Full=Gastrulation
           and brain-specific homeobox protein 1
 gi|182887765|gb|AAI60003.1| Gastrulation brain homeobox 1 [synthetic construct]
          Length = 363

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 236 LKGSLGTGAEEGAPVTAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 294

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 295 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 324


>gi|6753646|ref|NP_034184.1| homeobox protein DLX-2 [Mus musculus]
 gi|730929|sp|P40764.1|DLX2_MOUSE RecName: Full=Homeobox protein DLX-2; AltName: Full=Homeobox
           protein TES-1
 gi|201921|gb|AAA40412.1| Tes-1 homeobox protein [Mus musculus]
 gi|1477590|gb|AAB40901.1| DLX-2 [Mus musculus]
 gi|62871643|gb|AAH94317.1| Distal-less homeobox 2 [Mus musculus]
 gi|74194789|dbj|BAE25991.1| unnamed protein product [Mus musculus]
 gi|148695146|gb|EDL27093.1| distal-less homeobox 2 [Mus musculus]
          Length = 332

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 67/88 (76%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP+ ++ +K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 129 SSPVNNEPDKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 188

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 189 AASLGLTQTQVKIWFQNRRSKFKKMWKS 216


>gi|426358541|ref|XP_004046567.1| PREDICTED: homeobox protein GBX-1-like [Gorilla gorilla gorilla]
          Length = 200

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 73  LKGSLGTGAEEGAPVTAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 131

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 132 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 161


>gi|354467094|ref|XP_003496006.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein DLX-2-like
           [Cricetulus griseus]
          Length = 335

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 67/88 (76%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP+ ++ +K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 129 SSPVNNEPDKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 188

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 189 AASLGLTQTQVKIWFQNRRSKFKKMWKS 216


>gi|15425878|gb|AAK97630.1|AF404110_1 homeotic transcription factor dll [Junonia coenia]
          Length = 377

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 56/76 (73%), Gaps = 1/76 (1%)

Query: 27  DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           D P L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVK
Sbjct: 117 DDPGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVK 175

Query: 87  IWFQNRRAKAKRLQEA 102
           IWFQNRR+K K++ +A
Sbjct: 176 IWFQNRRSKYKKMMKA 191


>gi|195126675|ref|XP_002007796.1| GI13145 [Drosophila mojavensis]
 gi|193919405|gb|EDW18272.1| GI13145 [Drosophila mojavensis]
          Length = 551

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LEK+F++ +YLS  +R E +S L L+ETQVKIWFQNRR K KR +
Sbjct: 462 TRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSK 521

Query: 101 EAEIE 105
           +A+ E
Sbjct: 522 KAQQE 526


>gi|195016986|ref|XP_001984515.1| GH14983 [Drosophila grimshawi]
 gi|193897997|gb|EDV96863.1| GH14983 [Drosophila grimshawi]
          Length = 559

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LEK+F++ +YLS  +R E +S L L+ETQVKIWFQNRR K KR +
Sbjct: 468 TRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSK 527

Query: 101 EAEIE 105
           +A+ E
Sbjct: 528 KAQQE 532


>gi|90082126|dbj|BAE90344.1| unnamed protein product [Macaca fascicularis]
          Length = 208

 Score = 82.8 bits (203), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 77  KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 136

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 137 KKLMKQGGAALEGSALANGR 156


>gi|56181390|ref|NP_001007986.1| homeobox protein HMX3 [Gallus gallus]
 gi|82070069|sp|O57601.1|HMX3_CHICK RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
           H6 family member 3; AltName: Full=Homeobox protein
           Nkx-5.1; Short=cNkx5-1
 gi|2739307|emb|CAA75921.1| Nkx5-1 protein [Gallus gallus]
          Length = 308

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 50/112 (44%), Positives = 65/112 (58%), Gaps = 8/112 (7%)

Query: 11  EILILSSPLLSDSNKGDPPKLNVNLRKHKPNRKP------RTPFTTQQLLSLEKKFREKQ 64
           EI++  S   S+  K +    +   R+  P +KP      RT F+  Q+  LE  F  K+
Sbjct: 147 EIVLEESD--SEEGKKEGGAEDWKKREESPEKKPCRKKKTRTVFSRSQVFQLESTFDMKR 204

Query: 65  YLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 205 YLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 256


>gi|494973|gb|AAA18487.1| homeobox protein, partial [Mus musculus]
          Length = 307

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 67/88 (76%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP+ ++ +K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 104 SSPVNNEPDKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 163

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 164 AASLGLTQTQVKIWFQNRRSKFKKMWKS 191


>gi|158286612|ref|XP_308835.4| AGAP006923-PA [Anopheles gambiae str. PEST]
 gi|157020551|gb|EAA04094.4| AGAP006923-PA [Anopheles gambiae str. PEST]
          Length = 580

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 50/62 (80%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LE++F  K+YLS+ ER++ ++SL L+E QVKIWFQNRRAK KR++
Sbjct: 356 SRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVK 415

Query: 101 EA 102
             
Sbjct: 416 AG 417


>gi|56385107|gb|AAV85984.1| Dlx2 [Triakis semifasciata]
          Length = 268

 Score = 82.8 bits (203), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 66/92 (71%), Gaps = 1/92 (1%)

Query: 16  SSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +SP  +D  K   P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE +
Sbjct: 101 NSPANTDVEKDCEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 160

Query: 76  SSLHLTETQVKIWFQNRRAKAKRL-QEAEIEK 106
           +S+ LT+TQVKIWFQNRR+K K++ +  E+ K
Sbjct: 161 ASMGLTQTQVKIWFQNRRSKFKKMWKNGEMSK 192


>gi|109068893|ref|XP_001103813.1| PREDICTED: homeobox protein GBX-1-like [Macaca mulatta]
          Length = 329

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 202 LKGSLGTGAEEGAPVAAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 260

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 261 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 290


>gi|379045996|gb|AFC87781.1| distal-less [Schmidtea mediterranea]
          Length = 476

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 49/63 (77%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL  L K+F+  QYLS+ ERAE +SSL LT+TQVKIWFQNRR+K 
Sbjct: 233 KGKKIRKPRTIYSSLQLQQLSKRFQRTQYLSLPERAELASSLGLTQTQVKIWFQNRRSKY 292

Query: 97  KRL 99
           K+L
Sbjct: 293 KKL 295


>gi|119574408|gb|EAW54023.1| hCG1645212 [Homo sapiens]
          Length = 249

 Score = 82.4 bits (202), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 122 LKGSLGTGAEEGAPVTAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 180

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 181 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 210


>gi|221468761|ref|NP_001137759.1| Distal-less, isoform C [Drosophila melanogaster]
 gi|125660074|gb|ABN49265.1| IP14437p [Drosophila melanogaster]
 gi|220902389|gb|ACL83212.1| Distal-less, isoform C [Drosophila melanogaster]
          Length = 347

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
            S S+K +   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL 
Sbjct: 104 FSISDKCEDSGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLG 162

Query: 80  LTETQVKIWFQNRRAKAKRLQEA 102
           LT+TQVKIWFQNRR+K K++ +A
Sbjct: 163 LTQTQVKIWFQNRRSKYKKMMKA 185


>gi|27528346|emb|CAD43609.1| homeobox protein [Platynereis dumerilii]
          Length = 232

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/85 (48%), Positives = 57/85 (67%), Gaps = 3/85 (3%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
           +SD   G    +N    K   +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L 
Sbjct: 102 MSDVKVGGSHDINSGGGK---SRRRRTAFTSEQLLELEKEFHSKKYLSLTERSQIAHNLK 158

Query: 80  LTETQVKIWFQNRRAKAKRLQEAEI 104
           L+E QVKIWFQNRRAK KR++   I
Sbjct: 159 LSEVQVKIWFQNRRAKWKRVKAGYI 183


>gi|328713518|ref|XP_003245101.1| PREDICTED: hypothetical protein LOC100575169 [Acyrthosiphon pisum]
          Length = 516

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/66 (59%), Positives = 46/66 (69%)

Query: 45  RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   AEI
Sbjct: 322 RTVFSRSQVFQLESTFDIKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQVAAEI 381

Query: 105 EKIKMS 110
           E   M+
Sbjct: 382 EAANMA 387


>gi|154147609|ref|NP_001093727.1| distal-less homeobox 1 [Xenopus (Silurana) tropicalis]
 gi|118341662|gb|AAI27555.1| dlx1 protein [Xenopus (Silurana) tropicalis]
          Length = 251

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 120 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 179

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 180 KKLMKQGGAALESSALANGR 199


>gi|195120223|ref|XP_002004628.1| GI20035 [Drosophila mojavensis]
 gi|193909696|gb|EDW08563.1| GI20035 [Drosophila mojavensis]
          Length = 344

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
            S S+K +   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL 
Sbjct: 107 FSISDKCEDSGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLG 165

Query: 80  LTETQVKIWFQNRRAKAKRLQEA 102
           LT+TQVKIWFQNRR+K K++ +A
Sbjct: 166 LTQTQVKIWFQNRRSKYKKMMKA 188


>gi|82228888|sp|Q504H8.1|HMX3_DANRE RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
           H6 family member 3; AltName: Full=Homeobox protein
           Nkx-5.1
 gi|63102121|gb|AAH95015.1| Homeo box (H6 family) 3 [Danio rerio]
 gi|182891290|gb|AAI64241.1| Hmx3 protein [Danio rerio]
          Length = 297

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 171 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 230

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 231 AELEAANLSHAAAQR 245


>gi|157820981|ref|NP_001099772.1| homeobox protein HMX3 [Rattus norvegicus]
 gi|149061279|gb|EDM11702.1| similar to homeodomain protein (predicted) [Rattus norvegicus]
          Length = 356

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 228 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 287

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 288 AELEAANLSHAAAQR 302


>gi|432904534|ref|XP_004077379.1| PREDICTED: NK1 transcription factor-related protein 2-like [Oryzias
           latipes]
          Length = 267

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 42/105 (40%), Positives = 60/105 (57%), Gaps = 2/105 (1%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+   
Sbjct: 131 RRARTAFTYEQLVALENKFRTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 190

Query: 102 AEIEKIK--MSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHH 144
                ++   +++    P+ +     S   HQ F + S   ++ H
Sbjct: 191 GADSTLQPGSNSLINVSPNSVTCGSGSGSFHQTFSNFSSGNVIFH 235


>gi|348517979|ref|XP_003446510.1| PREDICTED: homeobox protein Dlx3b-like [Oreochromis niloticus]
          Length = 356

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 43/84 (51%), Positives = 59/84 (70%), Gaps = 3/84 (3%)

Query: 18  PLLSDSNKGDPPKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           P L DS K + P + V L   KP   RKPRT +++ QL  L+++F+  QYL++ ERAE +
Sbjct: 169 PSLQDSVK-EEPDMEVRLVNGKPKKVRKPRTIYSSYQLAVLQRRFQTAQYLALPERAELA 227

Query: 76  SSLHLTETQVKIWFQNRRAKAKRL 99
           + L LT+TQVKIWFQNRR+K K+L
Sbjct: 228 AQLGLTQTQVKIWFQNRRSKFKKL 251


>gi|260835894|ref|XP_002612942.1| linked to engrailed and distalless homeobox b [Branchiostoma
           floridae]
 gi|229298324|gb|EEN68951.1| linked to engrailed and distalless homeobox b [Branchiostoma
           floridae]
          Length = 282

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 56/163 (34%), Positives = 84/163 (51%), Gaps = 22/163 (13%)

Query: 21  SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
            D  + + P+L    R+ +  ++PRT FT +Q+  LE +F++ +YLS+ +R E S+ L L
Sbjct: 128 DDDVRSESPRL---YRQDERKKRPRTAFTAEQIKELEGEFQKNKYLSVTKRLELSNQLKL 184

Query: 81  TETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAA-----ARPHP------LYGPGPSPHL 129
           TETQ+KIWFQNRR K KR    ++E +     A+       P+P      LY  G  P  
Sbjct: 185 TETQIKIWFQNRRTKWKRKYTNDLELLAHQHYASLAGLYGAPNPWAYAQRLYNMGQHPGY 244

Query: 130 HQYFQHASPEALLHHPHPFSALLGRHPAMAHFMPAAPMPQNSP 172
           +QY    +  A   +P P   +L   P +     A P+  NSP
Sbjct: 245 YQYTPFQAAPAFPRYPSP---VLAHQPTL-----AGPVTPNSP 279


>gi|91090023|ref|XP_967446.1| PREDICTED: similar to H6 family homeobox 3 [Tribolium castaneum]
 gi|270013529|gb|EFA09977.1| hypothetical protein TcasGA2_TC012136 [Tribolium castaneum]
          Length = 432

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 45/83 (54%), Positives = 54/83 (65%), Gaps = 1/83 (1%)

Query: 34  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
           N   +K  +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR
Sbjct: 267 NSLSNKRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRR 326

Query: 94  AKAKRLQEAEIEKIKMSAIAAAR 116
            K KR   AE+E   M A AA R
Sbjct: 327 NKWKRQLAAELEAANM-AHAAQR 348


>gi|397488166|ref|XP_003815141.1| PREDICTED: homeobox protein GBX-1 [Pan paniscus]
          Length = 354

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 227 LKGSLGTGAEEGAPVTAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 285

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 286 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 315


>gi|348534471|ref|XP_003454725.1| PREDICTED: homeobox protein GBX-2-like [Oreochromis niloticus]
          Length = 353

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 252 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 311

Query: 101 EAEI 104
              +
Sbjct: 312 AGNV 315


>gi|328717312|ref|XP_003246169.1| PREDICTED: hypothetical protein LOC100569881 [Acyrthosiphon pisum]
          Length = 413

 Score = 82.4 bits (202), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 50/60 (83%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT+ QLL LE++F+ K+YLS+ ER+E ++SL L+E QVKIWFQNRRAK KR++
Sbjct: 259 SRRRRTAFTSGQLLELEREFQAKKYLSLTERSEIANSLKLSEVQVKIWFQNRRAKWKRVK 318


>gi|344296031|ref|XP_003419713.1| PREDICTED: homeobox protein HMX3-like [Loxodonta africana]
          Length = 282

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/102 (48%), Positives = 62/102 (60%), Gaps = 5/102 (4%)

Query: 16  SSPLLSDSNKG-DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           ++P   D  KG + P+     RK    +K RT F+  Q+  LE  F  K+YLS +ERA  
Sbjct: 132 AAPGTEDWKKGAESPEKKPACRK----KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGL 187

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           ++SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 188 AASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 229


>gi|410953268|ref|XP_003983294.1| PREDICTED: homeobox protein GBX-1, partial [Felis catus]
          Length = 307

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 180 LKGSLGTGAEEGAPVAAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 238

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 239 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 268


>gi|170051782|ref|XP_001861922.1| gbx homeobox protein [Culex quinquefasciatus]
 gi|167872878|gb|EDS36261.1| gbx homeobox protein [Culex quinquefasciatus]
          Length = 219

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 50/60 (83%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LE++F  K+YLS+ ER++ ++SL L+E QVKIWFQNRRAK KR++
Sbjct: 64  SRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVK 123


>gi|432903179|ref|XP_004077122.1| PREDICTED: homeobox protein HMX3-A-like [Oryzias latipes]
          Length = 303

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 176 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 235

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 236 AELEAANLSHAAAQR 250


>gi|195489824|ref|XP_002092901.1| GE14447 [Drosophila yakuba]
 gi|194179002|gb|EDW92613.1| GE14447 [Drosophila yakuba]
          Length = 327

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
            S S+K +   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL 
Sbjct: 104 FSISDKCEDSGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLG 162

Query: 80  LTETQVKIWFQNRRAKAKRLQEA 102
           LT+TQVKIWFQNRR+K K++ +A
Sbjct: 163 LTQTQVKIWFQNRRSKYKKMMKA 185


>gi|259302|gb|AAB24059.1| distal-less [Drosophila melanogaster]
          Length = 327

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
            S S+K +   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL 
Sbjct: 104 FSISDKCEDSGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLG 162

Query: 80  LTETQVKIWFQNRRAKAKRLQEA 102
           LT+TQVKIWFQNRR+K K++ +A
Sbjct: 163 LTQTQVKIWFQNRRSKYKKMMKA 185


>gi|402865431|ref|XP_003896926.1| PREDICTED: homeobox protein GBX-1-like, partial [Papio anubis]
          Length = 183

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 56  LKGSLGTGAEEGAPVAAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 114

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 115 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 144


>gi|195380233|ref|XP_002048875.1| GJ21278 [Drosophila virilis]
 gi|194143672|gb|EDW60068.1| GJ21278 [Drosophila virilis]
          Length = 329

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
            S S+K +   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL 
Sbjct: 107 FSISDKCEDSGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLG 165

Query: 80  LTETQVKIWFQNRRAKAKRLQEA 102
           LT+TQVKIWFQNRR+K K++ +A
Sbjct: 166 LTQTQVKIWFQNRRSKYKKMMKA 188


>gi|432960806|ref|XP_004086474.1| PREDICTED: homeobox protein Dlx3b-like [Oryzias latipes]
          Length = 276

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 59/82 (71%), Gaps = 3/82 (3%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSS 77
           L DS K + P++ V +   KP   RKPRT +++ QL  L+++F+  QYL++ ERAE ++ 
Sbjct: 92  LQDSGK-EEPEVEVRMVNGKPKKVRKPRTIYSSYQLAVLQRRFQSAQYLALPERAELAAQ 150

Query: 78  LHLTETQVKIWFQNRRAKAKRL 99
           L LT+TQVKIWFQNRR+K K+L
Sbjct: 151 LGLTQTQVKIWFQNRRSKFKKL 172


>gi|17647343|ref|NP_523857.1| Distal-less, isoform A [Drosophila melanogaster]
 gi|194886779|ref|XP_001976682.1| GG23010 [Drosophila erecta]
 gi|195353288|ref|XP_002043137.1| GM11904 [Drosophila sechellia]
 gi|195586557|ref|XP_002083040.1| GD11901 [Drosophila simulans]
 gi|66774174|sp|P20009.3|DLL_DROME RecName: Full=Homeotic protein distal-less; AltName: Full=Protein
           brista
 gi|7291860|gb|AAF47279.1| Distal-less, isoform A [Drosophila melanogaster]
 gi|190659869|gb|EDV57082.1| GG23010 [Drosophila erecta]
 gi|194127225|gb|EDW49268.1| GM11904 [Drosophila sechellia]
 gi|194195049|gb|EDX08625.1| GD11901 [Drosophila simulans]
          Length = 327

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
            S S+K +   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL 
Sbjct: 104 FSISDKCEDSGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLG 162

Query: 80  LTETQVKIWFQNRRAKAKRLQEA 102
           LT+TQVKIWFQNRR+K K++ +A
Sbjct: 163 LTQTQVKIWFQNRRSKYKKMMKA 185


>gi|444724220|gb|ELW64831.1| Homeobox protein GBX-1 [Tupaia chinensis]
          Length = 189

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 62  LKGSLGTGAEEGAPVAAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 120

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 121 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 150


>gi|24762749|ref|NP_726486.1| Distal-less, isoform B [Drosophila melanogaster]
 gi|7291861|gb|AAF47280.1| Distal-less, isoform B [Drosophila melanogaster]
          Length = 322

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
            S S+K +   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL 
Sbjct: 104 FSISDKCEDSGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLG 162

Query: 80  LTETQVKIWFQNRRAKAKRLQEA 102
           LT+TQVKIWFQNRR+K K++ +A
Sbjct: 163 LTQTQVKIWFQNRRSKYKKMMKA 185


>gi|351695427|gb|EHA98345.1| Homeobox protein GBX-1 [Heterocephalus glaber]
          Length = 202

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 43/104 (41%), Positives = 62/104 (59%), Gaps = 1/104 (0%)

Query: 1   TVDLPQLFLNEILILSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKF 60
           +  +P   L     L   L + + +G P    V     K  R+ RT FT++QLL LEK+F
Sbjct: 61  STGVPGALLGPKRKLKGSLGTGAEEGAPVATGVAAPGGKSRRR-RTAFTSEQLLELEKEF 119

Query: 61  REKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
             K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 120 HCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIKAGNV 163


>gi|348588233|ref|XP_003479871.1| PREDICTED: homeobox protein HMX3-like [Cavia porcellus]
          Length = 357

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 17  SPLLSDSNKG-DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +P   D  KG + P+     RK    +K RT F+  Q+  LE  F  K+YLS +ERA  +
Sbjct: 206 TPGYEDWKKGAESPEKKPACRK----KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 261

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           +SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 262 ASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 302


>gi|355748142|gb|EHH52639.1| hypothetical protein EGM_13108, partial [Macaca fascicularis]
          Length = 233

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 106 LKGSLGTGAEEGAPVAAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 164

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 165 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 194


>gi|195429830|ref|XP_002062960.1| GK21675 [Drosophila willistoni]
 gi|194159045|gb|EDW73946.1| GK21675 [Drosophila willistoni]
          Length = 323

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
            S S+K +   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL 
Sbjct: 104 FSISDKCEDSGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLG 162

Query: 80  LTETQVKIWFQNRRAKAKRLQEA 102
           LT+TQVKIWFQNRR+K K++ +A
Sbjct: 163 LTQTQVKIWFQNRRSKYKKMMKA 185


>gi|392339795|ref|XP_001060894.3| PREDICTED: homeobox protein GBX-1, partial [Rattus norvegicus]
          Length = 263

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 136 LKGSLGTGAEEGTPVATGVTTPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 194

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 195 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 224


>gi|288189647|gb|ADC43143.1| distal-less 2 [Sphyrna corona]
          Length = 210

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 66/92 (71%), Gaps = 1/92 (1%)

Query: 16  SSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +SP  +D  K   P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE +
Sbjct: 56  NSPANTDVEKDCEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 115

Query: 76  SSLHLTETQVKIWFQNRRAKAKRL-QEAEIEK 106
           +S+ LT+TQVKIWFQNRR+K K++ +  E+ K
Sbjct: 116 ASMGLTQTQVKIWFQNRRSKFKKMWKNGEMSK 147


>gi|195027740|ref|XP_001986740.1| GH20363 [Drosophila grimshawi]
 gi|193902740|gb|EDW01607.1| GH20363 [Drosophila grimshawi]
          Length = 327

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
            S S+K +   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL 
Sbjct: 105 FSISDKCEDSGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLG 163

Query: 80  LTETQVKIWFQNRRAKAKRLQEA 102
           LT+TQVKIWFQNRR+K K++ +A
Sbjct: 164 LTQTQVKIWFQNRRSKYKKMMKA 186


>gi|359323903|ref|XP_003640223.1| PREDICTED: homeobox protein DLX-2-like [Canis lupus familiaris]
          Length = 334

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 130 SSPATNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 189

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 190 AASLGLTQTQVKIWFQNRRSKFKKMWKS 217


>gi|344239571|gb|EGV95674.1| Homeobox protein DLX-2 [Cricetulus griseus]
          Length = 347

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 67/88 (76%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP+ ++ +K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 129 SSPVNNEPDKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 188

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 189 AASLGLTQTQVKIWFQNRRSKFKKMWKS 216


>gi|432107212|gb|ELK32626.1| Homeobox protein GBX-2 [Myotis davidii]
          Length = 267

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 166 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 225


>gi|348501548|ref|XP_003438331.1| PREDICTED: homeobox protein HMX3-A-like [Oreochromis niloticus]
          Length = 303

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 48/106 (45%), Positives = 61/106 (57%), Gaps = 2/106 (1%)

Query: 13  LILSSPLLSDSNKGDPPKLNVNLRKHKPNRK--PRTPFTTQQLLSLEKKFREKQYLSIAE 70
           +IL      ++ K +  +        KP RK   RT F+  Q+  LE  F  K+YLS +E
Sbjct: 145 IILEESDTEEAKKDELEEWKKRDDDKKPCRKKKTRTVFSRSQVFQLESTFDMKRYLSSSE 204

Query: 71  RAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           RA  ++SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 205 RAGLAASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 250


>gi|359080253|ref|XP_003587958.1| PREDICTED: homeobox protein HMX3-like [Bos taurus]
          Length = 359

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 17  SPLLSDSNKG-DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +P   D  KG + P+     RK    +K RT F+  Q+  LE  F  K+YLS +ERA  +
Sbjct: 208 TPGTEDWKKGAESPEKKPACRK----KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 263

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           +SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 264 ASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 304


>gi|296210206|ref|XP_002751872.1| PREDICTED: homeobox protein GBX-1 [Callithrix jacchus]
          Length = 362

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 235 LKGSLGTAAEEGAPVAAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 293

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 294 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 323


>gi|410976267|ref|XP_003994544.1| PREDICTED: homeobox protein HMX3 [Felis catus]
          Length = 242

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 113 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 172

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 173 AELEAANLSHAAAQR 187


>gi|354467092|ref|XP_003496005.1| PREDICTED: homeobox protein DLX-1-like [Cricetulus griseus]
 gi|344239570|gb|EGV95673.1| Homeobox protein DLX-1 [Cricetulus griseus]
          Length = 255

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ S++A  R
Sbjct: 184 KKLMKQGGAALEGSSLANGR 203


>gi|288189645|gb|ADC43142.1| distal-less 2 [Sphyrna lewini]
          Length = 209

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 66/92 (71%), Gaps = 1/92 (1%)

Query: 16  SSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +SP  +D  K   P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE +
Sbjct: 56  NSPANTDVEKDCEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 115

Query: 76  SSLHLTETQVKIWFQNRRAKAKRL-QEAEIEK 106
           +S+ LT+TQVKIWFQNRR+K K++ +  E+ K
Sbjct: 116 ASMGLTQTQVKIWFQNRRSKFKKMWKNGEMSK 147


>gi|288189637|gb|ADC43138.1| distal-less 2 [Sphyrna zygaena]
          Length = 210

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 66/92 (71%), Gaps = 1/92 (1%)

Query: 16  SSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +SP  +D  K   P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE +
Sbjct: 56  NSPANTDVEKDCEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 115

Query: 76  SSLHLTETQVKIWFQNRRAKAKRL-QEAEIEK 106
           +S+ LT+TQVKIWFQNRR+K K++ +  E+ K
Sbjct: 116 ASMGLTQTQVKIWFQNRRSKFKKMWKNGEMSK 147


>gi|354496948|ref|XP_003510585.1| PREDICTED: hypothetical protein LOC100767995 [Cricetulus griseus]
          Length = 455

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 51/76 (67%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR  
Sbjct: 326 KKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQL 385

Query: 101 EAEIEKIKMSAIAAAR 116
            AE+E   +S  AA R
Sbjct: 386 AAELEAANLSHAAAQR 401


>gi|344254398|gb|EGW10502.1| Homeobox protein HMX3 [Cricetulus griseus]
          Length = 257

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 129 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 188

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 189 AELEAANLSHAAAQR 203


>gi|259013281|ref|NP_001158358.1| gastrulation brain homeobox [Saccoglossus kowalevskii]
 gi|32307777|gb|AAP79285.1| gastrulation brain homeobox [Saccoglossus kowalevskii]
          Length = 295

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/59 (61%), Positives = 49/59 (83%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LEK+F  K+YLS+ ER++ +S+L L+E QVKIWFQNRRAK KR++
Sbjct: 187 RRRRTAFTSEQLLELEKEFHSKKYLSLTERSQIASALKLSEVQVKIWFQNRRAKWKRVK 245


>gi|395842723|ref|XP_003794163.1| PREDICTED: homeobox protein HMX3 [Otolemur garnettii]
          Length = 340

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 211 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 270

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 271 AELEAANLSHAAAQR 285


>gi|194211461|ref|XP_001916417.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein GBX-2-like [Equus
           caballus]
          Length = 348

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 247 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 306


>gi|195155029|ref|XP_002018409.1| GL16779 [Drosophila persimilis]
 gi|198458983|ref|XP_001361208.2| GA17570 [Drosophila pseudoobscura pseudoobscura]
 gi|194114205|gb|EDW36248.1| GL16779 [Drosophila persimilis]
 gi|198136532|gb|EAL25786.2| GA17570 [Drosophila pseudoobscura pseudoobscura]
          Length = 328

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/83 (50%), Positives = 59/83 (71%), Gaps = 1/83 (1%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
            S S+K +   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL 
Sbjct: 104 FSISDKCEESGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLG 162

Query: 80  LTETQVKIWFQNRRAKAKRLQEA 102
           LT+TQVKIWFQNRR+K K++ +A
Sbjct: 163 LTQTQVKIWFQNRRSKYKKMMKA 185


>gi|380029830|ref|XP_003698568.1| PREDICTED: uncharacterized protein LOC100867221 [Apis florea]
          Length = 541

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 45/113 (39%), Positives = 62/113 (54%), Gaps = 4/113 (3%)

Query: 16  SSPLLSDSNKGDPPKLNVNLRKH----KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAER 71
           ++ + S+  K D PK + +        K  RK RT FT  QL +LEK F  ++YLS+ +R
Sbjct: 153 AASVTSNGGKEDDPKSSSSSTLSSAQSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQDR 212

Query: 72  AEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPG 124
            E ++ L LT+TQVK W+QNRR K KR      E +  +  A A    LYG G
Sbjct: 213 MELAAKLQLTDTQVKTWYQNRRTKWKRQTIVGFEIMAENNFAVAAFQQLYGSG 265


>gi|297687559|ref|XP_002821279.1| PREDICTED: homeobox protein HMX3 [Pongo abelii]
          Length = 357

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 17  SPLLSDSNKG-DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +P   D  KG + P+     RK    +K RT F+  Q+  LE  F  K+YLS +ERA  +
Sbjct: 206 TPGAEDWKKGAESPEKKPACRK----KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 261

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           +SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 262 ASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 302


>gi|355561183|gb|EHH17869.1| hypothetical protein EGK_14350, partial [Macaca mulatta]
          Length = 240

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 113 LKGSLGTGAEEGAPVAAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 171

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 172 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 201


>gi|157743259|ref|NP_001099044.1| homeobox protein HMX3 [Homo sapiens]
 gi|190359524|sp|A6NHT5.1|HMX3_HUMAN RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
           H6 family member 3; AltName: Full=Homeobox protein
           Nkx-5.1
 gi|119569674|gb|EAW49289.1| hCG1781691 [Homo sapiens]
          Length = 357

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 17  SPLLSDSNKG-DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +P   D  KG + P+     RK    +K RT F+  Q+  LE  F  K+YLS +ERA  +
Sbjct: 206 TPGAEDWKKGAESPEKKPACRK----KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 261

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           +SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 262 ASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 302


>gi|74200840|dbj|BAE24788.1| unnamed protein product [Mus musculus]
          Length = 260

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 159 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 218


>gi|391337785|ref|XP_003743245.1| PREDICTED: uncharacterized protein LOC100901974 [Metaseiulus
           occidentalis]
          Length = 332

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 46/107 (42%), Positives = 61/107 (57%), Gaps = 7/107 (6%)

Query: 21  SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
            D N  D      NL+  K  RK RT FT  QL +LEK F +++YLS+ +R E ++ L L
Sbjct: 140 GDENDND---FECNLKGSKKPRKARTAFTDHQLKTLEKSFEKQKYLSVQDRMELAARLDL 196

Query: 81  TETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSP 127
           T+TQVK W+QNRR K KR     ++ + +    AAR   L G G SP
Sbjct: 197 TDTQVKTWYQNRRTKWKRQAMFGLDFLPI----AARQMLLNGGGGSP 239


>gi|288189639|gb|ADC43139.1| distal-less 2 [Sphyrna mokarran]
          Length = 208

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 66/92 (71%), Gaps = 1/92 (1%)

Query: 16  SSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +SP  +D  K   P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE +
Sbjct: 56  NSPANTDVEKDCEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 115

Query: 76  SSLHLTETQVKIWFQNRRAKAKRL-QEAEIEK 106
           +S+ LT+TQVKIWFQNRR+K K++ +  E+ K
Sbjct: 116 ASMGLTQTQVKIWFQNRRSKFKKMWKNGEMSK 147


>gi|194205572|ref|XP_001915073.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein HMX3-like [Equus
           caballus]
          Length = 358

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 17  SPLLSDSNKG-DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +P   D  KG + P+     RK    +K RT F+  Q+  LE  F  K+YLS +ERA  +
Sbjct: 207 TPGAEDWKKGAESPEKKPACRK----KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 262

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           +SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 263 ASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSPAAAQR 303


>gi|119631591|gb|EAX11186.1| distal-less homeobox 1, isoform CRA_f [Homo sapiens]
          Length = 167

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/80 (48%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 36  KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 95

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+A  R
Sbjct: 96  KKLMKQGGAALEGSALANGR 115


>gi|326978574|dbj|BAK08655.1| transcriptional factor distal-less [Daphnia magna]
          Length = 418

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 3/79 (3%)

Query: 27  DPPKLNVNLR---KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTET 83
           D   L+  +R   K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+T
Sbjct: 150 DKDSLDSGIRVNGKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQT 209

Query: 84  QVKIWFQNRRAKAKRLQEA 102
           QVKIWFQNRR+K K++ +A
Sbjct: 210 QVKIWFQNRRSKYKKMMKA 228


>gi|402881721|ref|XP_003904413.1| PREDICTED: homeobox protein HMX3 [Papio anubis]
          Length = 357

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 228 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 287

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 288 AELEAANLSHAAAQR 302


>gi|395851469|ref|XP_003798276.1| PREDICTED: homeobox protein GBX-2 [Otolemur garnettii]
          Length = 348

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 247 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 306


>gi|291414062|ref|XP_002723283.1| PREDICTED: gastrulation brain homeobox 2-like [Oryctolagus
           cuniculus]
          Length = 344

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 243 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 302


>gi|288189651|gb|ADC43145.1| distal-less 2 [Carcharhinus acronotus]
          Length = 197

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 66/92 (71%), Gaps = 1/92 (1%)

Query: 16  SSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +SP  +D  K   P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE +
Sbjct: 55  NSPANTDVEKDCEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 114

Query: 76  SSLHLTETQVKIWFQNRRAKAKRL-QEAEIEK 106
           +S+ LT+TQVKIWFQNRR+K K++ +  E+ K
Sbjct: 115 ASMGLTQTQVKIWFQNRRSKFKKMWKNGEMSK 146


>gi|70569253|dbj|BAE06378.1| transcription factor protein [Ciona intestinalis]
          Length = 385

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 51/63 (80%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           RKPRT +++ QL +L ++F++ QYL++ ERAE +++L LT+TQVKIWFQNRR+K K+L +
Sbjct: 110 RKPRTIYSSLQLQALNRRFQQTQYLALPERAELAATLGLTQTQVKIWFQNRRSKCKKLMK 169

Query: 102 AEI 104
             I
Sbjct: 170 QGI 172


>gi|391340170|ref|XP_003744418.1| PREDICTED: uncharacterized protein LOC100898132 [Metaseiulus
           occidentalis]
          Length = 413

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS++ER++ +  L L+E QVKIWFQNRRAK KR++
Sbjct: 309 NRRRRTAFTSEQLLELEKEFHSKKYLSLSERSQIAHQLKLSEVQVKIWFQNRRAKWKRVK 368


>gi|82245462|sp|Q90XP0.1|HMX3A_ORYLA RecName: Full=Homeobox protein HMX3-A; AltName: Full=Homeobox
           protein H6 family member 3-A; AltName: Full=Homeobox
           protein Nkx-5.1.1; AltName: Full=OlNkx-5.1.1
 gi|15637259|gb|AAL04484.1|AF365970_1 transcription factor Nkx5-1.1 [Oryzias latipes]
          Length = 303

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 176 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 235

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 236 AELEAANLSHAAAQR 250


>gi|410901024|ref|XP_003963996.1| PREDICTED: homeobox protein HMX3-A-like [Takifugu rubripes]
          Length = 301

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 174 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 233

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 234 AELEAANLSHAAAQR 248


>gi|403276604|ref|XP_003929984.1| PREDICTED: homeobox protein GBX-1 [Saimiri boliviensis boliviensis]
          Length = 402

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 275 LKGSLGTGAEEGAPVAAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 333

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 334 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 363


>gi|431908252|gb|ELK11852.1| Homeobox protein HMX3 [Pteropus alecto]
          Length = 301

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 172 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 231

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 232 AELEAANLSHAAAQR 246


>gi|195588583|ref|XP_002084037.1| GD14043 [Drosophila simulans]
 gi|194196046|gb|EDX09622.1| GD14043 [Drosophila simulans]
          Length = 321

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LEK+F++ +YLS  +R E +S L L+ETQVKIWFQNRR K KR +
Sbjct: 236 TRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETQVKIWFQNRRMKWKRSK 295

Query: 101 EAEIE 105
           +A+ E
Sbjct: 296 KAQQE 300


>gi|397490741|ref|XP_003816351.1| PREDICTED: homeobox protein HMX3 [Pan paniscus]
          Length = 357

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 17  SPLLSDSNKG-DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +P   D  KG + P+     RK    +K RT F+  Q+  LE  F  K+YLS +ERA  +
Sbjct: 206 TPGAEDWKKGAESPEKKPACRK----KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 261

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           +SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 262 ASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 302


>gi|338724466|ref|XP_001495207.3| PREDICTED: homeobox protein GBX-1-like [Equus caballus]
          Length = 298

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 171 LKGSLGTGTEEGAPVAAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 229

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 230 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 259


>gi|426215111|ref|XP_004001821.1| PREDICTED: homeobox protein GBX-2 [Ovis aries]
          Length = 349

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 248 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 307


>gi|297669787|ref|XP_002813071.1| PREDICTED: homeobox protein GBX-2 [Pongo abelii]
          Length = 348

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 247 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 306


>gi|57105432|ref|XP_543300.1| PREDICTED: homeobox protein GBX-2 [Canis lupus familiaris]
          Length = 348

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 247 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 306


>gi|6753952|ref|NP_034392.1| homeobox protein GBX-2 [Mus musculus]
 gi|1351127|sp|P48031.1|GBX2_MOUSE RecName: Full=Homeobox protein GBX-2; AltName: Full=Gastrulation
           and brain-specific homeobox protein 2; AltName:
           Full=Stimulated by retinoic acid gene 7 protein
 gi|755767|emb|CAA88737.1| Stra7 [Mus musculus]
 gi|3676057|gb|AAC61877.1| gastrulation-brain-homeobox-2 [Mus musculus]
 gi|109734223|gb|AAI16966.1| Gastrulation brain homeobox 2 [Mus musculus]
 gi|111307299|gb|AAI20493.1| Gastrulation brain homeobox 2 [Mus musculus]
 gi|148708152|gb|EDL40099.1| gastrulation brain homeobox 2 [Mus musculus]
          Length = 348

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 247 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 306


>gi|297302006|ref|XP_002808561.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein HMX3-like [Macaca
           mulatta]
          Length = 357

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 228 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 287

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 288 AELEAANLSHAAAQR 302


>gi|3395529|emb|CAA08911.1| homeodomain protein [Mus musculus]
          Length = 356

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 228 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 287

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 288 AELEAANLSHAAAQR 302


>gi|306877|gb|AAA36002.1| homeobox protein, partial [Homo sapiens]
          Length = 139

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 12  LKGSLGTGAEEGAPVTAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 70

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 71  AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 100


>gi|194041604|ref|XP_001928044.1| PREDICTED: homeobox protein HMX3 [Sus scrofa]
          Length = 357

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 228 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 287

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 288 AELEAANLSHAAAQR 302


>gi|157787085|ref|NP_032283.3| homeobox protein HMX3 [Mus musculus]
 gi|341941024|sp|P42581.3|HMX3_MOUSE RecName: Full=Homeobox protein HMX3; AltName: Full=Homeobox protein
           H6 family member 3; AltName: Full=Homeobox protein
           Nkx-5.1
 gi|148685770|gb|EDL17717.1| H6 homeobox 3 [Mus musculus]
 gi|223460068|gb|AAI39484.1| H6 homeo box 3 [Mus musculus]
 gi|223460368|gb|AAI39483.1| H6 homeo box 3 [Mus musculus]
          Length = 356

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 228 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 287

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 288 AELEAANLSHAAAQR 302


>gi|348577341|ref|XP_003474443.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein GBX-2-like [Cavia
           porcellus]
          Length = 373

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 272 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 331


>gi|109101578|ref|XP_001082998.1| PREDICTED: homeobox protein GBX-2 [Macaca mulatta]
 gi|114584053|ref|XP_526072.2| PREDICTED: homeobox protein GBX-2 [Pan troglodytes]
 gi|332256845|ref|XP_003277528.1| PREDICTED: homeobox protein GBX-2 [Nomascus leucogenys]
 gi|402889761|ref|XP_003908171.1| PREDICTED: homeobox protein GBX-2 [Papio anubis]
 gi|426339002|ref|XP_004033454.1| PREDICTED: homeobox protein GBX-2 [Gorilla gorilla gorilla]
          Length = 348

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 247 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 306


>gi|58332796|ref|NP_001011472.1| gastrulation brain homeobox 2, gene 2 [Xenopus (Silurana)
           tropicalis]
 gi|56970645|gb|AAH88605.1| gastrulation brain homeobox 2, gene 2 [Xenopus (Silurana)
           tropicalis]
          Length = 340

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 49/64 (76%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ +  L L+E QVKIWFQNRRAK KR++
Sbjct: 239 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHVLKLSEVQVKIWFQNRRAKWKRVK 298

Query: 101 EAEI 104
              +
Sbjct: 299 AGNV 302


>gi|351694610|gb|EHA97528.1| Homeobox protein HMX3 [Heterocephalus glaber]
          Length = 384

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 17  SPLLSDSNKG-DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +P   D  KG + P+     RK    +K RT F+  Q+  LE  F  K+YLS +ERA  +
Sbjct: 233 TPGSEDWKKGAESPEKKPACRK----KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 288

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           +SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 289 ASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 329


>gi|317419511|emb|CBN81548.1| Homeobox protein HMX3-B [Dicentrarchus labrax]
          Length = 290

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 44/81 (54%), Positives = 53/81 (65%)

Query: 36  RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
           RK    +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K
Sbjct: 161 RKPCRKKKTRTVFSRSQVFQLESTFDIKRYLSSSERAGLAASLHLTETQVKIWFQNRRNK 220

Query: 96  AKRLQEAEIEKIKMSAIAAAR 116
            KR   AE+E   +S  AA R
Sbjct: 221 WKRQLAAELEAANLSHAAAQR 241


>gi|311273306|ref|XP_003133803.1| PREDICTED: homeobox protein GBX-2 [Sus scrofa]
          Length = 348

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 247 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 306


>gi|426358543|ref|XP_004046568.1| PREDICTED: homeobox protein GBX-1-like [Gorilla gorilla gorilla]
          Length = 337

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/90 (45%), Positives = 58/90 (64%), Gaps = 1/90 (1%)

Query: 15  LSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           L   L + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ 
Sbjct: 210 LKGSLGTGAEEGAPVTAGVTAPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQI 268

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           + +L L+E QVKIWFQNRRAK KR++   +
Sbjct: 269 AHALKLSEVQVKIWFQNRRAKWKRIKAGNV 298


>gi|300798543|ref|NP_001179074.1| homeobox protein GBX-2 [Bos taurus]
 gi|296488808|tpg|DAA30921.1| TPA: gastrulation brain homeobox 2-like [Bos taurus]
          Length = 349

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 248 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 307


>gi|45593144|ref|NP_001476.2| homeobox protein GBX-2 [Homo sapiens]
 gi|12644308|sp|P52951.3|GBX2_HUMAN RecName: Full=Homeobox protein GBX-2; AltName: Full=Gastrulation
           and brain-specific homeobox protein 2
 gi|5106978|gb|AAD39907.1|AF118452_1 homeobox protein GBX2 [Homo sapiens]
 gi|62702316|gb|AAX93240.1| unknown [Homo sapiens]
 gi|119591490|gb|EAW71084.1| gastrulation brain homeobox 2 [Homo sapiens]
 gi|187950653|gb|AAI37450.1| Gastrulation brain homeobox 2 [Homo sapiens]
 gi|187952617|gb|AAI37449.1| Gastrulation brain homeobox 2 [Homo sapiens]
 gi|208966344|dbj|BAG73186.1| gastrulation brain homeobox 2 [synthetic construct]
          Length = 348

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 247 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 306


>gi|339515601|dbj|BAK52154.1| transcription factor distal-less [Artemia franciscana]
          Length = 310

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 58/83 (69%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K 
Sbjct: 132 KGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKY 191

Query: 97  KRLQEAEIEKIKMSAIAAARPHP 119
           K++ +A  ++  +   A   P+P
Sbjct: 192 KKMMKAAQQQGGVPGNALTHPNP 214


>gi|296205942|ref|XP_002749994.1| PREDICTED: homeobox protein GBX-2 [Callithrix jacchus]
          Length = 348

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 247 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 306


>gi|288189641|gb|ADC43140.1| distal-less 2 [Sphyrna tudes]
          Length = 169

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 66/92 (71%), Gaps = 1/92 (1%)

Query: 16  SSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +SP  +D  K   P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE +
Sbjct: 49  NSPANTDVEKDCEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 108

Query: 76  SSLHLTETQVKIWFQNRRAKAKRL-QEAEIEK 106
           +S+ LT+TQVKIWFQNRR+K K++ +  E+ K
Sbjct: 109 ASMGLTQTQVKIWFQNRRSKFKKMWKNGEMSK 140


>gi|332835226|ref|XP_508090.3| PREDICTED: homeobox protein HMX3 [Pan troglodytes]
          Length = 357

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 17  SPLLSDSNKG-DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +P   D  KG + P+     RK    +K RT F+  Q+  LE  F  K+YLS +ERA  +
Sbjct: 206 TPGAEDWKKGAESPEKKPACRK----KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLA 261

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           +SLHLTETQVKIWFQNRR K KR   AE+E   +S  AA R
Sbjct: 262 ASLHLTETQVKIWFQNRRNKWKRQLAAELEAANLSHAAAQR 302


>gi|431912226|gb|ELK14363.1| Homeobox protein GBX-2 [Pteropus alecto]
          Length = 348

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 247 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 306


>gi|354502959|ref|XP_003513549.1| PREDICTED: homeobox protein GBX-2-like [Cricetulus griseus]
          Length = 295

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 194 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 253


>gi|662847|gb|AAA65185.1| homeobox protein [Mus musculus]
 gi|1096657|prf||2112239A Gbx-2 gene
          Length = 339

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 238 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 297


>gi|11992385|gb|AAG41496.1| homeodomain protein DlxB, partial [Petromyzon marinus]
          Length = 280

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/78 (52%), Positives = 56/78 (71%), Gaps = 1/78 (1%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           D +  +P    VN  K K  RKPRT +++ QL +L+++F   QYL++ ERAE ++SL LT
Sbjct: 56  DKDDSEPEARLVN-GKPKKVRKPRTIYSSFQLAALQRRFERTQYLALPERAELAASLGLT 114

Query: 82  ETQVKIWFQNRRAKAKRL 99
           +TQVKIWFQNRR+K KRL
Sbjct: 115 QTQVKIWFQNRRSKFKRL 132


>gi|449275421|gb|EMC84293.1| Homeobox protein DLX-1, partial [Columba livia]
          Length = 240

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 58/80 (72%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+   R
Sbjct: 184 KKLMKQGGAALESSALTNGR 203


>gi|195442103|ref|XP_002068799.1| GK17836 [Drosophila willistoni]
 gi|194164884|gb|EDW79785.1| GK17836 [Drosophila willistoni]
          Length = 500

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 50/60 (83%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LE++F  K+YLS+ ER++ ++SL L+E QVKIWFQNRRAK KR++
Sbjct: 327 SRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVK 386


>gi|281371502|ref|NP_446160.1| gastrulation brain homeobox 2 [Rattus norvegicus]
 gi|149037649|gb|EDL92080.1| gastrulation brain homeobox 2 [Rattus norvegicus]
          Length = 348

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 247 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 306


>gi|33859672|ref|NP_056554.1| homeobox protein GBX-1 [Mus musculus]
 gi|71153521|sp|P82976.2|GBX1_MOUSE RecName: Full=Homeobox protein GBX-1; AltName: Full=Gastrulation
           and brain-specific homeobox protein 1
 gi|27464910|gb|AAO16238.1| gastrulation brain homeobox 1 [Mus musculus]
 gi|33469257|gb|AAQ19677.1| gastrulation brain homeobox 1 [Mus musculus]
 gi|162318816|gb|AAI56359.1| Gastrulation brain homeobox 1 [synthetic construct]
          Length = 418

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 39/84 (46%), Positives = 56/84 (66%), Gaps = 1/84 (1%)

Query: 21  SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
           + + +G P    V     K  R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L
Sbjct: 297 TGAEEGTPVATGVTTPGGKSRRR-RTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKL 355

Query: 81  TETQVKIWFQNRRAKAKRLQEAEI 104
           +E QVKIWFQNRRAK KR++   +
Sbjct: 356 SEVQVKIWFQNRRAKWKRIKAGNV 379


>gi|332212002|ref|XP_003255107.1| PREDICTED: homeobox protein HMX3 [Nomascus leucogenys]
          Length = 357

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 228 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 287

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 288 AELEAANLSHAAAQR 302


>gi|288189643|gb|ADC43141.1| distal-less 2 [Sphyrna media]
          Length = 196

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 66/92 (71%), Gaps = 1/92 (1%)

Query: 16  SSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +SP  +D  K   P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE +
Sbjct: 44  NSPANTDVEKDCEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 103

Query: 76  SSLHLTETQVKIWFQNRRAKAKRL-QEAEIEK 106
           +S+ LT+TQVKIWFQNRR+K K++ +  E+ K
Sbjct: 104 ASMGLTQTQVKIWFQNRRSKFKKMWKNGEMTK 135


>gi|288189649|gb|ADC43144.1| distal-less 2 [Eusphyra blochii]
          Length = 187

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/92 (44%), Positives = 66/92 (71%), Gaps = 1/92 (1%)

Query: 16  SSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +SP  +D  K   P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE +
Sbjct: 55  NSPANTDVEKDCEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 114

Query: 76  SSLHLTETQVKIWFQNRRAKAKRL-QEAEIEK 106
           +S+ LT+TQVKIWFQNRR+K K++ +  E+ K
Sbjct: 115 ASMGLTQTQVKIWFQNRRSKFKKMWKNGEMSK 146


>gi|444729278|gb|ELW69703.1| Homeobox protein HMX3 [Tupaia chinensis]
          Length = 333

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 51/76 (67%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR  
Sbjct: 203 KKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQL 262

Query: 101 EAEIEKIKMSAIAAAR 116
            AE+E   +S  AA R
Sbjct: 263 AAELEAANLSHAAAQR 278


>gi|388267629|gb|AFK25812.1| distal-less, partial [Rheumatobates rileyi]
          Length = 143

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 41/81 (50%), Positives = 57/81 (70%), Gaps = 1/81 (1%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           D   G+   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT
Sbjct: 29  DEKCGEEGGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLT 87

Query: 82  ETQVKIWFQNRRAKAKRLQEA 102
           +TQVKIWFQNRR+K K++ +A
Sbjct: 88  QTQVKIWFQNRRSKYKKMMKA 108


>gi|296221408|ref|XP_002756719.1| PREDICTED: homeobox protein HMX3 [Callithrix jacchus]
          Length = 360

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 231 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 290

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 291 AELEAANLSHAAAQR 305


>gi|126273319|ref|XP_001376242.1| PREDICTED: homeobox protein HMX3-like [Monodelphis domestica]
          Length = 358

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 231 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 290

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 291 AELEAANLSHAAAQR 305


>gi|348508580|ref|XP_003441832.1| PREDICTED: homeobox protein HMX3-B-like [Oreochromis niloticus]
          Length = 290

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 167 KKTRTVFSRSQVFQLESTFDIKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 226

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 227 AELEAANLSHAAAQR 241


>gi|355562849|gb|EHH19443.1| hypothetical protein EGK_20147, partial [Macaca mulatta]
          Length = 277

 Score = 81.6 bits (200), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 51/76 (67%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR  
Sbjct: 147 KKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQL 206

Query: 101 EAEIEKIKMSAIAAAR 116
            AE+E   +S  AA R
Sbjct: 207 AAELEAANLSHAAAQR 222


>gi|74210507|dbj|BAE23632.1| unnamed protein product [Mus musculus]
          Length = 188

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 87  NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 146


>gi|327260741|ref|XP_003215192.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein GBX-2-like [Anolis
           carolinensis]
          Length = 368

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 267 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 326


>gi|91085837|ref|XP_974929.1| PREDICTED: similar to GA14073-PA [Tribolium castaneum]
          Length = 236

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 49/59 (83%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+YLS+ ER++ +S+L L+E QVKIWFQNRRAK KR++
Sbjct: 103 RRRRTAFTSEQLLELEREFHAKKYLSLTERSQIASALRLSEVQVKIWFQNRRAKWKRVK 161


>gi|242004367|ref|XP_002423066.1| Homeobox protein GBX-1, putative [Pediculus humanus corporis]
 gi|212505997|gb|EEB10328.1| Homeobox protein GBX-1, putative [Pediculus humanus corporis]
          Length = 145

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 49/59 (83%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+YLS+ ER++ +S+L L+E QVKIWFQNRRAK KR++
Sbjct: 16  RRRRTAFTSEQLLELEREFHAKKYLSLTERSQIASTLKLSEVQVKIWFQNRRAKWKRVK 74


>gi|344257113|gb|EGW13217.1| Homeobox protein GBX-2 [Cricetulus griseus]
          Length = 222

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 121 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 180


>gi|391325897|ref|XP_003737463.1| PREDICTED: uncharacterized protein LOC100906241 [Metaseiulus
           occidentalis]
          Length = 338

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 45/106 (42%), Positives = 64/106 (60%), Gaps = 5/106 (4%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +FR  +YLS  +R E +++L LTETQVKIWFQNRR K KR ++
Sbjct: 166 RRPRTAFTSQQLLELENQFRMNKYLSRPKRFEVATNLMLTETQVKIWFQNRRMKWKRSKK 225

Query: 102 AEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHHPHP 147
           A+ E    + ++ +R     G   +  +       S + +L H  P
Sbjct: 226 AQQE----AKVSGSREKKDEGSSQTS-IGGGLSSLSNQGMLMHGVP 266


>gi|432849113|ref|XP_004066539.1| PREDICTED: homeobox protein GBX-2-like [Oryzias latipes]
          Length = 217

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 116 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 175

Query: 101 EAEI 104
              +
Sbjct: 176 AGNV 179


>gi|328711633|ref|XP_003244593.1| PREDICTED: hypothetical protein LOC100574649 [Acyrthosiphon pisum]
          Length = 411

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 57/77 (74%), Gaps = 1/77 (1%)

Query: 31  LNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90
           L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQ
Sbjct: 170 LRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQ 228

Query: 91  NRRAKAKRLQEAEIEKI 107
           NRR+K K++ +A  +++
Sbjct: 229 NRRSKYKKMMKAAQQQV 245


>gi|224055073|ref|XP_002198787.1| PREDICTED: homeobox protein DLX-1 [Taeniopygia guttata]
          Length = 255

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 58/80 (72%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ SA+   R
Sbjct: 184 KKLMKQGGAALESSALTNGR 203


>gi|410969726|ref|XP_004001457.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein GBX-2 [Felis
           catus]
          Length = 277

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 176 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 235


>gi|256075804|ref|XP_002574206.1| nk homeobox protein [Schistosoma mansoni]
          Length = 514

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 31  LNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90
            NVN    KP R+ RT FT +QL++LE KF+  +YLS+ ER   + SL+LTETQVKIWFQ
Sbjct: 163 FNVNDSNMKP-RRARTAFTYEQLVTLENKFKMTRYLSVCERLNLALSLNLTETQVKIWFQ 221

Query: 91  NRRAKAKR 98
           NRR K K+
Sbjct: 222 NRRTKWKK 229


>gi|426366479|ref|XP_004050285.1| PREDICTED: homeobox protein HMX3 [Gorilla gorilla gorilla]
          Length = 563

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 434 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 493

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 494 AELEAANLSHAAAQR 508



 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 41/101 (40%), Positives = 54/101 (53%), Gaps = 3/101 (2%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K    + 
Sbjct: 285 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKXXXXKA 344

Query: 102 AEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEALL 142
              +    S      P PL    P    H+     SP+ ++
Sbjct: 345 LLRDSSPASGTDRDSPEPLLKADPD---HKELDSKSPDEII 382


>gi|353231831|emb|CCD79186.1| putative nk homeobox protein [Schistosoma mansoni]
          Length = 514

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 39/68 (57%), Positives = 49/68 (72%), Gaps = 1/68 (1%)

Query: 31  LNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90
            NVN    KP R+ RT FT +QL++LE KF+  +YLS+ ER   + SL+LTETQVKIWFQ
Sbjct: 163 FNVNDSNMKP-RRARTAFTYEQLVTLENKFKMTRYLSVCERLNLALSLNLTETQVKIWFQ 221

Query: 91  NRRAKAKR 98
           NRR K K+
Sbjct: 222 NRRTKWKK 229


>gi|301604816|ref|XP_002932046.1| PREDICTED: homeobox protein GBX-2-like isoform 1 [Xenopus
           (Silurana) tropicalis]
          Length = 340

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 239 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 298


>gi|148922110|gb|AAI46639.1| Unknown (protein for MGC:160982) [Xenopus laevis]
          Length = 340

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 239 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 298


>gi|301604818|ref|XP_002932047.1| PREDICTED: homeobox protein GBX-2-like isoform 2 [Xenopus
           (Silurana) tropicalis]
          Length = 344

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 243 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 302


>gi|348519687|ref|XP_003447361.1| PREDICTED: homeobox protein Dlx2a [Oreochromis niloticus]
          Length = 276

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 66/88 (75%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGDP-PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  +D+ K +  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 99  SSPTPADTEKDESEPEIRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 158

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K+L ++
Sbjct: 159 AASLGLTQTQVKIWFQNRRSKFKKLWKS 186


>gi|74096283|ref|NP_001027821.1| distal-less [Ciona intestinalis]
 gi|10129669|emb|CAC08327.1| Distal-less [Ciona intestinalis]
          Length = 288

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 34/63 (53%), Positives = 51/63 (80%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           RKPRT +++ QL +L ++F++ QYL++ ERAE +++L LT+TQVKIWFQNRR+K K+L +
Sbjct: 57  RKPRTIYSSLQLQALNRRFQQTQYLALPERAELAATLGLTQTQVKIWFQNRRSKCKKLMK 116

Query: 102 AEI 104
             I
Sbjct: 117 QGI 119


>gi|432933095|ref|XP_004081804.1| PREDICTED: homeobox protein Dlx1a-like [Oryzias latipes]
          Length = 253

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 56/80 (70%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 123 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 182

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     I  + +   R
Sbjct: 183 KKLMKQGGSTIDTNVLTTGR 202


>gi|387538948|gb|AFJ79676.1| distal-less short variant, partial [Limnoporus dissortis]
          Length = 251

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 56/80 (70%), Gaps = 1/80 (1%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           D   G+   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT
Sbjct: 29  DEKCGEEGGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLT 87

Query: 82  ETQVKIWFQNRRAKAKRLQE 101
           +TQVKIWFQNRR+K K++ +
Sbjct: 88  QTQVKIWFQNRRSKYKKMMK 107


>gi|148226178|ref|NP_001083900.1| gastrulation brain homeobox 2, gene 1 [Xenopus laevis]
 gi|15277706|gb|AAK93965.1|AF395825_1 homeobox protein GBX-2b [Xenopus laevis]
 gi|71679802|gb|AAI00216.1| Gbx2b protein [Xenopus laevis]
          Length = 336

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 235 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 294


>gi|149633402|ref|XP_001509419.1| PREDICTED: homeobox protein GBX-2-like [Ornithorhynchus anatinus]
          Length = 344

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 243 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 302


>gi|55846778|gb|AAV67393.1| gastrulation brain homeobox 2 protein [Macaca fascicularis]
          Length = 144

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 54  NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 113


>gi|444722073|gb|ELW62777.1| Homeobox protein HMX1 [Tupaia chinensis]
          Length = 535

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 50/75 (66%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS AERA  ++SL LTETQVKIWFQNRR K KR   
Sbjct: 363 KKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLA 422

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 423 AELEAANLSHAAAQR 437


>gi|397484086|ref|XP_003813215.1| PREDICTED: homeobox protein GBX-2 [Pan paniscus]
          Length = 317

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 216 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 275


>gi|387538942|gb|AFJ79673.1| distal-less short variant, partial [Microvelia americana]
          Length = 246

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 56/80 (70%), Gaps = 1/80 (1%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           D   G+   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT
Sbjct: 29  DEKCGEEGGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLT 87

Query: 82  ETQVKIWFQNRRAKAKRLQE 101
           +TQVKIWFQNRR+K K++ +
Sbjct: 88  QTQVKIWFQNRRSKYKKMMK 107


>gi|306432005|emb|CBJ55489.1| dlx2a protein [Haplochromis burtoni]
          Length = 276

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/88 (47%), Positives = 66/88 (75%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGDP-PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  +D+ K +  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 99  SSPTPADTEKDESEPEIRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 158

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K+L ++
Sbjct: 159 AASLGLTQTQVKIWFQNRRSKFKKLWKS 186


>gi|121309576|dbj|BAF44111.1| gastrulation brain homeobox 2 [Rattus norvegicus]
          Length = 154

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 63  NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 122


>gi|440900316|gb|ELR51479.1| Homeobox protein GBX-2, partial [Bos grunniens mutus]
          Length = 174

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 73  NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 132


>gi|403291543|ref|XP_003936843.1| PREDICTED: homeobox protein GBX-2 [Saimiri boliviensis boliviensis]
          Length = 315

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 214 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 273


>gi|387538940|gb|AFJ79672.1| distal-less short variant, partial [Gerris buenoi]
          Length = 251

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/80 (50%), Positives = 56/80 (70%), Gaps = 1/80 (1%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           D   G+   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT
Sbjct: 29  DEKCGEEGGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLT 87

Query: 82  ETQVKIWFQNRRAKAKRLQE 101
           +TQVKIWFQNRR+K K++ +
Sbjct: 88  QTQVKIWFQNRRSKYKKMMK 107


>gi|270011026|gb|EFA07474.1| gastrulation brain homeobox 2 [Tribolium castaneum]
          Length = 245

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 49/59 (83%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+YLS+ ER++ +S+L L+E QVKIWFQNRRAK KR++
Sbjct: 112 RRRRTAFTSEQLLELEREFHAKKYLSLTERSQIASALRLSEVQVKIWFQNRRAKWKRVK 170


>gi|170059735|ref|XP_001865491.1| gbx homeobox protein [Culex quinquefasciatus]
 gi|167878380|gb|EDS41763.1| gbx homeobox protein [Culex quinquefasciatus]
          Length = 190

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 50/60 (83%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LE++F  K+YLS+ ER++ ++SL L+E QVKIWFQNRRAK KR++
Sbjct: 35  SRRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVK 94


>gi|124054263|gb|ABM89339.1| GBX2 [Pongo pygmaeus]
          Length = 173

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 72  NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 131


>gi|358419224|ref|XP_003584166.1| PREDICTED: homeobox protein HMX3-like [Bos taurus]
          Length = 359

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 49/101 (48%), Positives = 61/101 (60%), Gaps = 5/101 (4%)

Query: 17  SPLLSDSNKG-DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +P   D  KG + P+     RK    +K RT F+  Q+L LE  F  K+YLS +ERA  +
Sbjct: 208 TPGTEDWKKGAESPEKKPACRK----KKTRTVFSRSQVLELESTFDMKRYLSSSERAGLA 263

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR 116
           +SLHLTETQVKIW QNRR K KR   AE+E   +S  AA R
Sbjct: 264 ASLHLTETQVKIWLQNRRNKWKRQLAAELEAANLSHAAAQR 304


>gi|121483994|gb|ABM54315.1| GBX2 [Pan paniscus]
 gi|122053982|gb|ABM65993.1| GBX2 [Ateles geoffroyi]
 gi|124111246|gb|ABM92016.1| GBX2 [Pan troglodytes]
          Length = 173

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 72  NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 131


>gi|45384198|ref|NP_990399.1| homeobox protein GBX-2 [Gallus gallus]
 gi|6016108|sp|O42230.1|GBX2_CHICK RecName: Full=Homeobox protein GBX-2; AltName: Full=Gastrulation
           and brain-specific homeobox protein 2
 gi|2554937|gb|AAB82710.1| homeobox protein [Gallus gallus]
          Length = 340

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 239 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 298


>gi|334325020|ref|XP_001372785.2| PREDICTED: homeobox protein GBX-2-like [Monodelphis domestica]
          Length = 352

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 251 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 310


>gi|224830719|gb|ACN66454.1| distal-less [Neanthes arenaceodentata]
          Length = 351

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 53/70 (75%), Gaps = 1/70 (1%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           +L VN  K K  RKPRT +++ QL  L K+F+  QYL++ ERAE ++SL LT+TQVKIWF
Sbjct: 131 ELRVN-GKGKKMRKPRTIYSSLQLQQLNKRFQRTQYLALPERAELAASLGLTQTQVKIWF 189

Query: 90  QNRRAKAKRL 99
           QNRR+K K+L
Sbjct: 190 QNRRSKYKKL 199


>gi|120974769|gb|ABM46732.1| GBX2 [Gorilla gorilla]
          Length = 173

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 72  NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 131


>gi|124013676|gb|ABM88107.1| GBX2 [Macaca nemestrina]
          Length = 173

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 72  NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 131


>gi|449506409|ref|XP_004186166.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein GBX-2 [Taeniopygia
           guttata]
          Length = 183

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 82  NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 141


>gi|431894909|gb|ELK04702.1| Homeobox protein DLX-1 [Pteropus alecto]
          Length = 255

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 59/80 (73%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++ +A++  R
Sbjct: 184 KKLMKQGGAALEGNALSNGR 203


>gi|410901064|ref|XP_003964016.1| PREDICTED: NK1 transcription factor-related protein 2-like
           [Takifugu rubripes]
          Length = 264

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/106 (40%), Positives = 62/106 (58%), Gaps = 4/106 (3%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ- 100
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+   
Sbjct: 128 RRARTAFTYEQLVALENKFRTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKKQNP 187

Query: 101 --EAEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHH 144
             ++ ++    S ++ ++  P  G  P+   HQ F       ++ H
Sbjct: 188 GVDSTLQPGSNSMVSVSQTPPACGTNPAT-FHQTFHDFRSANVIFH 232


>gi|403260089|ref|XP_003922520.1| PREDICTED: homeobox protein HMX3, partial [Saimiri boliviensis
           boliviensis]
          Length = 265

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 51/76 (67%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR  
Sbjct: 136 KKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQL 195

Query: 101 EAEIEKIKMSAIAAAR 116
            AE+E   +S  AA R
Sbjct: 196 AAELEAANLSHAAAQR 211


>gi|212648508|ref|NP_510169.4| Protein CEH-28 [Caenorhabditis elegans]
 gi|153012155|gb|AAO46042.2| NK-2 family homeodomain protein CEH-28 [Caenorhabditis elegans]
 gi|186929595|emb|CAB00867.4| Protein CEH-28 [Caenorhabditis elegans]
          Length = 201

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 62/101 (61%), Gaps = 8/101 (7%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
           +NLR  +  RKPR  FT  Q+  LE++F++++Y++  ER E +  L LT TQVKIWFQNR
Sbjct: 96  INLRSQQQKRKPRVLFTQHQVNELEERFKKQRYVTATEREELAQCLGLTATQVKIWFQNR 155

Query: 93  RAKAKRLQEAEIEKIKMSAI------AAARPHPLYGPGPSP 127
           R K KRL  A+   +++S I      A+A P  +   G +P
Sbjct: 156 RYKCKRL--AQDRTLQLSQIPFNPMFASAFPFGINSFGTAP 194


>gi|397507666|ref|XP_003824309.1| PREDICTED: homeobox protein DLX-2 isoform 1 [Pan paniscus]
          Length = 401

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 126 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 185

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 186 AASLGLTQTQVKIWFQNRRSKFKKMWKS 213


>gi|431894910|gb|ELK04703.1| Homeobox protein DLX-2 [Pteropus alecto]
          Length = 327

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 123 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 182

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 183 AASLGLTQTQVKIWFQNRRSKFKKMWKS 210


>gi|118786299|ref|XP_555988.2| AGAP005346-PA [Anopheles gambiae str. PEST]
 gi|116126253|gb|EAL39802.2| AGAP005346-PA [Anopheles gambiae str. PEST]
          Length = 461

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 59/171 (34%), Positives = 81/171 (47%), Gaps = 44/171 (25%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           ++PRT F+  Q+ +LE +F   +YLS+A+R   +  LHLTETQ+KIWFQNRR K KR   
Sbjct: 150 KRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLHLTETQIKIWFQNRRTKWKRKYT 209

Query: 102 AEIEKI------KMSAIAAARPHPL-----------YGPGPSPHLHQYFQHASPEALLHH 144
           A++E +      ++   + ARP  +            GP P   L           LL+ 
Sbjct: 210 ADVESLASHYYSQLGIGSFARPMVVGDRLWLFSQTPNGPTPVQSL-----------LLNG 258

Query: 145 PHPFSALLGRHPAMAHFMPAA---------PMPQNSPPGGSDMKASPPRPS 186
           P P  A    HPA+    PAA         P+P N+ P        PPRP 
Sbjct: 259 PQP-GAAGASHPALGMQHPAAIRPYPTLSGPIPMNAGPN------FPPRPG 302


>gi|169259802|ref|NP_001108570.1| homeobox protein HMX2 [Danio rerio]
 gi|157987311|gb|ABW07817.1| homeobox transcription factor [Danio rerio]
          Length = 267

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 46/98 (46%), Positives = 58/98 (59%), Gaps = 5/98 (5%)

Query: 17  SPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
           SP+  D  +  P K N + +K     K RT F+  Q+  LE  F  K+YLS +ERA  +S
Sbjct: 126 SPVSEDRRRDGPDKQNNSAKK-----KTRTVFSRSQVYQLESTFDMKRYLSSSERACLAS 180

Query: 77  SLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAA 114
           SL LTETQVK WFQNRR K KR   AE+E   M+  +A
Sbjct: 181 SLQLTETQVKTWFQNRRNKWKRQLSAELEAANMAHASA 218


>gi|351699036|gb|EHB01955.1| Homeobox protein GBX-2 [Heterocephalus glaber]
          Length = 177

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 76  NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 135


>gi|403258772|ref|XP_003921920.1| PREDICTED: homeobox protein DLX-2 [Saimiri boliviensis boliviensis]
          Length = 328

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 126 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 185

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 186 AASLGLTQTQVKIWFQNRRSKFKKMWKS 213


>gi|395501931|ref|XP_003755340.1| PREDICTED: homeobox protein HMX3 [Sarcophilus harrisii]
          Length = 282

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 42/75 (56%), Positives = 51/75 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 155 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 214

Query: 102 AEIEKIKMSAIAAAR 116
           AE+E   +S  AA R
Sbjct: 215 AELEAANLSHAAAQR 229


>gi|197631360|gb|ACH70609.1| NK-like homeobox protein 1a [Capitella teleta]
          Length = 148

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 45/57 (78%)

Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
          R+ RT FT +QL++LE KFR+ +YLS+ ER   + SL+LTETQVKIWFQNRR K K+
Sbjct: 17 RRVRTAFTYEQLVALENKFRQTRYLSVCERLNLALSLNLTETQVKIWFQNRRTKWKK 73


>gi|114326267|ref|NP_001039307.2| homeobox protein DLX-1 [Gallus gallus]
 gi|49245974|gb|AAT58227.1| homeodomain transcription factor DLX1 [Gallus gallus]
          Length = 255

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 37/80 (46%), Positives = 58/80 (72%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRLQEAEIEKIKMSAIAAAR 116
           K+L +     ++  A++  R
Sbjct: 184 KKLMKQGGAALESGALSNGR 203


>gi|402888634|ref|XP_003907661.1| PREDICTED: homeobox protein DLX-2 [Papio anubis]
          Length = 328

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 126 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 185

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 186 AASLGLTQTQVKIWFQNRRSKFKKMWKS 213


>gi|348536152|ref|XP_003455561.1| PREDICTED: barH-like 1 homeobox protein-like [Oreochromis
           niloticus]
          Length = 297

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 43/103 (41%), Positives = 62/103 (60%), Gaps = 1/103 (0%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           RK RT F+ QQL  LE+ F++++YLS+ ER E ++SL L++TQVK W+QNRR K KR   
Sbjct: 138 RKARTAFSDQQLARLERSFQKQKYLSVQERMELAASLQLSDTQVKTWYQNRRTKWKRQSA 197

Query: 102 AEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHH 144
           A +E +  ++      H LY P P P ++ Y   +    LL  
Sbjct: 198 AGLELLAEASRMFLPTHYLYPPAP-PTMNLYLTGSLRNGLLWR 239


>gi|426228645|ref|XP_004023406.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein GBX-1-like [Ovis
           aries]
          Length = 293

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/83 (48%), Positives = 56/83 (67%), Gaps = 7/83 (8%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR  
Sbjct: 190 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKR-- 247

Query: 101 EAEIEKIKMSAIAAARPHPLYGP 123
                +IK   +++    P+  P
Sbjct: 248 -----RIKAGNVSSRSGEPVRNP 265


>gi|348585803|ref|XP_003478660.1| PREDICTED: homeobox protein DLX-2-like [Cavia porcellus]
          Length = 328

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 125 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 184

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 185 AASLGLTQTQVKIWFQNRRSKFKKMWKS 212


>gi|354467548|ref|XP_003496231.1| PREDICTED: homeobox protein Nkx-2.6-like [Cricetulus griseus]
 gi|344235876|gb|EGV91979.1| Homeobox protein Nkx-2.6 [Cricetulus griseus]
          Length = 273

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 53/74 (71%)

Query: 34  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
            L + +P RKPR  F+  Q+L+LE++FR+++YLS  ER   +S+L LT TQVKIWFQNRR
Sbjct: 105 GLARTRPRRKPRVLFSQAQVLALERRFRQQRYLSAPEREHLASALQLTSTQVKIWFQNRR 164

Query: 94  AKAKRLQEAEIEKI 107
            K KR ++ +  ++
Sbjct: 165 YKCKRQRQDQTLEL 178


>gi|296204522|ref|XP_002749389.1| PREDICTED: homeobox protein DLX-2 [Callithrix jacchus]
          Length = 329

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 127 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 186

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 187 AASLGLTQTQVKIWFQNRRSKFKKMWKS 214


>gi|449506969|ref|XP_002192247.2| PREDICTED: motor neuron and pancreas homeobox protein 1-like
           [Taeniopygia guttata]
          Length = 161

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 40/70 (57%), Positives = 53/70 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 17  RRPRTAFTSQQLLELENQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRK 76

Query: 102 AEIEKIKMSA 111
           A+ +  +M A
Sbjct: 77  AKEQGAQMEA 86


>gi|27819639|ref|NP_777286.1| gastrulation brain homeobox 1 [Danio rerio]
 gi|15077101|gb|AAK83070.1|AF288763_1 transcription factor Gbx1 [Danio rerio]
 gi|190338193|gb|AAI62948.1| Gastrulation brain homeobox 1 [Danio rerio]
 gi|190340219|gb|AAI62949.1| Gastrulation brain homeobox 1 [Danio rerio]
          Length = 316

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 214 SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 273

Query: 101 EAEI 104
              +
Sbjct: 274 AGNV 277


>gi|241257748|ref|XP_002404657.1| Xvent-2B protein, putative [Ixodes scapularis]
 gi|215496664|gb|EEC06304.1| Xvent-2B protein, putative [Ixodes scapularis]
          Length = 203

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 48/59 (81%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT F+++QLL LEK+F  K+YLS+ ER++ + +L LTE QVKIWFQNRRAK KR++
Sbjct: 85  RRRRTAFSSEQLLELEKEFHSKKYLSLTERSQIAHALQLTEVQVKIWFQNRRAKWKRVK 143


>gi|4758168|ref|NP_004396.1| homeobox protein DLX-2 [Homo sapiens]
 gi|2506529|sp|Q07687.2|DLX2_HUMAN RecName: Full=Homeobox protein DLX-2
 gi|1477592|gb|AAB40902.1| DLX-2 [Homo sapiens]
 gi|21618603|gb|AAH32558.1| Distal-less homeobox 2 [Homo sapiens]
 gi|62822408|gb|AAY14956.1| unknown [Homo sapiens]
 gi|119631585|gb|EAX11180.1| distal-less homeobox 2 [Homo sapiens]
 gi|158256170|dbj|BAF84056.1| unnamed protein product [Homo sapiens]
 gi|313882572|gb|ADR82772.1| distal-less homeobox 2 [synthetic construct]
          Length = 328

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 126 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 185

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 186 AASLGLTQTQVKIWFQNRRSKFKKMWKS 213


>gi|355750623|gb|EHH54950.1| hypothetical protein EGM_04061, partial [Macaca fascicularis]
          Length = 308

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 106 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 165

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 166 AASLGLTQTQVKIWFQNRRSKFKKMWKS 193


>gi|355564974|gb|EHH21463.1| hypothetical protein EGK_04536, partial [Macaca mulatta]
          Length = 293

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 91  SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 150

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 151 AASLGLTQTQVKIWFQNRRSKFKKMWKS 178


>gi|387538938|gb|AFJ79671.1| distal-less long variant, partial [Gerris buenoi]
          Length = 286

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           D   G+   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT
Sbjct: 29  DEKCGEEGGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLT 87

Query: 82  ETQVKIWFQNRRAKAKRL 99
           +TQVKIWFQNRR+K K++
Sbjct: 88  QTQVKIWFQNRRSKYKKM 105


>gi|387538946|gb|AFJ79675.1| distal-less long variant, partial [Limnoporus dissortis]
          Length = 286

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           D   G+   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT
Sbjct: 29  DEKCGEEGGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLT 87

Query: 82  ETQVKIWFQNRRAKAKRL 99
           +TQVKIWFQNRR+K K++
Sbjct: 88  QTQVKIWFQNRRSKYKKM 105


>gi|306710|gb|AAA19663.1| homeodomain protein DLX-2, partial [Homo sapiens]
          Length = 244

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 42  SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 101

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 102 AASLGLTQTQVKIWFQNRRSKFKKMWKS 129


>gi|397507668|ref|XP_003824310.1| PREDICTED: homeobox protein DLX-2 isoform 2 [Pan paniscus]
          Length = 390

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 115 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 174

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 175 AASLGLTQTQVKIWFQNRRSKFKKMWKS 202


>gi|426337706|ref|XP_004032839.1| PREDICTED: homeobox protein DLX-2 [Gorilla gorilla gorilla]
 gi|410253468|gb|JAA14701.1| distal-less homeobox 2 [Pan troglodytes]
 gi|410301440|gb|JAA29320.1| distal-less homeobox 2 [Pan troglodytes]
 gi|410332065|gb|JAA34979.1| distal-less homeobox 2 [Pan troglodytes]
          Length = 328

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 126 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 185

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 186 AASLGLTQTQVKIWFQNRRSKFKKMWKS 213


>gi|297668851|ref|XP_002812636.1| PREDICTED: homeobox protein DLX-2 [Pongo abelii]
          Length = 328

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 126 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 185

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 186 AASLGLTQTQVKIWFQNRRSKFKKMWKS 213


>gi|109100071|ref|XP_001086012.1| PREDICTED: homeobox protein DLX-2 [Macaca mulatta]
          Length = 328

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 126 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 185

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 186 AASLGLTQTQVKIWFQNRRSKFKKMWKS 213


>gi|242003830|ref|XP_002436223.1| homeobox protein, putative [Ixodes scapularis]
 gi|215499559|gb|EEC09053.1| homeobox protein, putative [Ixodes scapularis]
          Length = 243

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 40/88 (45%), Positives = 54/88 (61%)

Query: 28  PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKI 87
           PP  +V   K K  RK RT FT  QL +LEK F  ++YLS+ +R E ++ L+LT+TQVK 
Sbjct: 28  PPGGSVCALKMKKQRKARTAFTDHQLQTLEKSFERQKYLSVQDRMELAAKLNLTDTQVKT 87

Query: 88  WFQNRRAKAKRLQEAEIEKIKMSAIAAA 115
           W+QNRR K KR     +E +  +   AA
Sbjct: 88  WYQNRRTKWKRQTAVGLELLAEAGNYAA 115


>gi|395857042|ref|XP_003800922.1| PREDICTED: homeobox protein DLX-2 [Otolemur garnettii]
          Length = 326

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 124 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 183

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 184 AASLGLTQTQVKIWFQNRRSKFKKMWKS 211


>gi|122935020|gb|ABM68272.1| GBX2 [Lagothrix lagotricha]
          Length = 173

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 72  NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 131


>gi|195168355|ref|XP_002024997.1| GL18045 [Drosophila persimilis]
 gi|194108427|gb|EDW30470.1| GL18045 [Drosophila persimilis]
          Length = 593

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/65 (58%), Positives = 50/65 (76%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+PRT FT+QQLL LEK+F++ +YLS  +R E +S L L+ET VKIWFQNRR K KR +
Sbjct: 489 TRRPRTAFTSQQLLELEKQFKQNKYLSRPKRFEVASGLMLSETPVKIWFQNRRMKWKRSK 548

Query: 101 EAEIE 105
           +A +E
Sbjct: 549 KAPLE 553


>gi|410968848|ref|XP_003990911.1| PREDICTED: homeobox protein DLX-2 [Felis catus]
          Length = 331

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 124 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 183

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 184 AASLGLTQTQVKIWFQNRRSKFKKMWKS 211


>gi|344268854|ref|XP_003406271.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein DLX-2-like
           [Loxodonta africana]
          Length = 333

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 130 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 189

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 190 AASLGLTQTQVKIWFQNRRSKFKKMWKS 217


>gi|347970365|ref|XP_562540.3| AGAP003670-PA [Anopheles gambiae str. PEST]
 gi|333468899|gb|EAL40614.3| AGAP003670-PA [Anopheles gambiae str. PEST]
          Length = 458

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 58/92 (63%), Gaps = 6/92 (6%)

Query: 35  LRKH---KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
           LRK+   +  RKPR  F+  Q+L LE++FR+++YLS  ER   +S L LT TQVKIWFQN
Sbjct: 268 LRKNGKLRAKRKPRILFSQGQVLELERRFRQQRYLSAPERETLASILKLTPTQVKIWFQN 327

Query: 92  RRAKAKRLQEAEIEKIKMSAIAAARPHPLYGP 123
           RR K+KR+Q   IE   ++   A     + GP
Sbjct: 328 RRYKSKRVQ---IESASVAKCDATSSTGVAGP 356


>gi|157133629|ref|XP_001662948.1| gbx homeobox protein [Aedes aegypti]
 gi|108870751|gb|EAT34976.1| AAEL012824-PA [Aedes aegypti]
          Length = 193

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 49/59 (83%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+YLS+ ER++ +++L L+E QVKIWFQNRRAK KR++
Sbjct: 57  RRRRTAFTSEQLLELEREFHAKKYLSLTERSQIATTLKLSEVQVKIWFQNRRAKWKRVK 115


>gi|148229270|ref|NP_001081416.1| homeobox protein GBX-2 [Xenopus laevis]
 gi|595271|gb|AAA85029.1| homeobox protein Xgbx-2 [Xenopus laevis]
          Length = 340

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 48/60 (80%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ +  L L+E QVKIWFQNRRAK KR++
Sbjct: 239 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHVLKLSEVQVKIWFQNRRAKWKRVK 298


>gi|410923673|ref|XP_003975306.1| PREDICTED: homeobox protein GBX-1-like [Takifugu rubripes]
          Length = 321

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 219 SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 278

Query: 101 EAEI 104
              +
Sbjct: 279 AGNV 282


>gi|11992387|gb|AAG41498.1| homeodomain protein DlxD [Petromyzon marinus]
          Length = 247

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 43/92 (46%), Positives = 64/92 (69%), Gaps = 4/92 (4%)

Query: 15  LSSPLLSDSNKGDPPKL-NVNLR---KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAE 70
           L+   L D++    P + N  LR   K K  RKPRT +++ QL +L ++F++ QYL++ E
Sbjct: 86  LNQTRLDDTDPEKTPVIHNGELRFNGKGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPE 145

Query: 71  RAEFSSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           RAE ++SL LT+TQVKIWFQN+R+K K+L +A
Sbjct: 146 RAELAASLGLTQTQVKIWFQNKRSKYKKLMKA 177


>gi|297474282|ref|XP_002687021.1| PREDICTED: homeobox protein GBX-1 [Bos taurus]
 gi|296488219|tpg|DAA30332.1| TPA: gastrulation brain homeo box 1-like [Bos taurus]
          Length = 481

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 379 SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 438

Query: 101 EAEI 104
              +
Sbjct: 439 AGNV 442


>gi|335305121|ref|XP_003360124.1| PREDICTED: homeobox protein GBX-1-like [Sus scrofa]
          Length = 365

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 263 SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 322

Query: 101 EAEI 104
              +
Sbjct: 323 AGNV 326


>gi|6166174|sp|Q91907.1|GBX2_XENLA RecName: Full=Homeobox protein GBX-2; AltName: Full=Gastrulation
           and brain-specific homeobox protein 2; AltName:
           Full=XGBX-2
 gi|1019674|gb|AAA79290.1| homeobox [Xenopus laevis]
 gi|213623512|gb|AAI69847.1| Homeobox protein Xgbx-2 [Xenopus laevis]
 gi|213623514|gb|AAI69849.1| Homeobox protein Xgbx-2 [Xenopus laevis]
          Length = 340

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 48/60 (80%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ +  L L+E QVKIWFQNRRAK KR++
Sbjct: 239 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHVLKLSEVQVKIWFQNRRAKWKRVK 298


>gi|147899416|ref|NP_001083795.1| NK1 homeobox 2 [Xenopus laevis]
 gi|30962578|dbj|BAC76752.1| NK-1 related homeobox protein Nbx [Xenopus laevis]
          Length = 255

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT +QL++LE +FR  +YLS+ ER   + +LHLTETQVKIWFQNRR K K+ Q
Sbjct: 110 RRARTAFTYEQLVALESRFRSSRYLSVCERLSLALTLHLTETQVKIWFQNRRTKWKKQQ 168


>gi|307212743|gb|EFN88419.1| Homeobox protein GBX-2 [Harpegnathos saltator]
          Length = 259

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+YLS+ ER+  + +L L+E QVKIWFQNRRAK KR++
Sbjct: 55  RRRRTAFTSEQLLELEREFHAKKYLSLTERSHIAHALKLSEVQVKIWFQNRRAKWKRVK 113


>gi|213623530|gb|AAI69870.1| NK-1 related homeobox protein Nbx [Xenopus laevis]
          Length = 255

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT +QL++LE +FR  +YLS+ ER   + +LHLTETQVKIWFQNRR K K+ Q
Sbjct: 110 RRARTAFTYEQLVALESRFRSSRYLSVCERLSLALTLHLTETQVKIWFQNRRTKWKKQQ 168


>gi|170035788|ref|XP_001845749.1| conserved hypothetical protein [Culex quinquefasciatus]
 gi|167878186|gb|EDS41569.1| conserved hypothetical protein [Culex quinquefasciatus]
          Length = 438

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 49/66 (74%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           ++PRT F+  Q+ +LE +F   +YLS+A+R   + SLHLTETQ+KIWFQNRR K KR   
Sbjct: 153 KRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKSLHLTETQIKIWFQNRRTKWKRKYT 212

Query: 102 AEIEKI 107
           +++E++
Sbjct: 213 SDVEQL 218


>gi|259013358|ref|NP_001158386.1| BarH-like homeobox [Saccoglossus kowalevskii]
 gi|32307805|gb|AAP79299.1| barH [Saccoglossus kowalevskii]
          Length = 332

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 50/119 (42%), Positives = 70/119 (58%), Gaps = 12/119 (10%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RK RT F+  QL +LE+ F  ++YLS+ ER + +SSL+LT+TQVK W+QNRR K 
Sbjct: 189 KTKKQRKARTAFSDHQLNTLERSFERQKYLSVQERMDLASSLNLTDTQVKTWYQNRRTKW 248

Query: 97  KRLQEAEIEKIKMSAIAAARPHPLYG--PGPSPHLHQYFQHASPEALLHHPHPFSALLG 153
           KR  +  +E  +     A   +PL+   P PSP    YF H S ++LL +     +L G
Sbjct: 249 KRQMQVGLEFFE-----AGNFNPLHSILPRPSP----YFYHPS-QSLLTNMESIYSLHG 297


>gi|358412066|ref|XP_596545.5| PREDICTED: homeobox protein GBX-1 [Bos taurus]
          Length = 470

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 368 SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 427

Query: 101 EAEI 104
              +
Sbjct: 428 AGNV 431


>gi|391324919|ref|XP_003736989.1| PREDICTED: brain-specific homeobox protein homolog [Metaseiulus
           occidentalis]
          Length = 315

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 44/124 (35%), Positives = 70/124 (56%), Gaps = 5/124 (4%)

Query: 2   VDLPQLFLNEILILSSPLLSDSNKGDPPKLNVNLRKHKPNRKPR---TPFTTQQLLSLEK 58
           ++LP  + N +++  S   SD + G   +     +   P++KPR   T FT  QL  LE+
Sbjct: 132 LELPHHYRNPVVLTDSE--SDIDVGCEIETGRQSKDASPHKKPRRRRTAFTQAQLAYLER 189

Query: 59  KFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPH 118
           +FR ++YLS+A+R + +  L+L+ETQVK W+QNRR K KR     +E ++ +    A   
Sbjct: 190 RFRSQKYLSVADRGQVAEILNLSETQVKTWYQNRRTKWKRQTNMRLEHLRQADGGTAEDI 249

Query: 119 PLYG 122
            L G
Sbjct: 250 SLDG 253


>gi|357617769|gb|EHJ70982.1| putative H6 family homeobox 3 [Danaus plexippus]
          Length = 341

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 50/75 (66%)

Query: 39  KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           K  +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR
Sbjct: 205 KRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKR 264

Query: 99  LQEAEIEKIKMSAIA 113
              AE+E   M+  A
Sbjct: 265 QLAAELEAANMAHAA 279


>gi|321457985|gb|EFX69061.1| putative transcriptional factor distal-less protein [Daphnia pulex]
          Length = 429

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 39/81 (48%), Positives = 56/81 (69%), Gaps = 3/81 (3%)

Query: 25  KGDPPKLNVNLR---KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           + D   L   +R   K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT
Sbjct: 155 RDDKDSLESGIRVNGKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLT 214

Query: 82  ETQVKIWFQNRRAKAKRLQEA 102
           +TQVKIWFQNRR+K K++ +A
Sbjct: 215 QTQVKIWFQNRRSKYKKMMKA 235


>gi|260835892|ref|XP_002612941.1| linked to engrailed and distalless homeobox a [Branchiostoma
           floridae]
 gi|229298323|gb|EEN68950.1| linked to engrailed and distalless homeobox a [Branchiostoma
           floridae]
          Length = 282

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 55/144 (38%), Positives = 79/144 (54%), Gaps = 16/144 (11%)

Query: 28  PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKI 87
           PP+L   L   +  ++PRT FT +Q+  LE +F++ +YLS+ +R E S+ L LTETQ+KI
Sbjct: 133 PPRL---LSHSEGKKRPRTAFTAEQIKELEGEFQKNKYLSVTKRLELSNQLKLTETQIKI 189

Query: 88  WFQNRRAKAKRLQEAEIEKIKMSAIAA----ARPHPLYGPGPSPHLHQYFQHASPEALLH 143
           WFQNRR K KR    ++E +     A+    + PHP Y     PH   Y+      +   
Sbjct: 190 WFQNRRTKWKRKFTNDLELMAHQHYASMGLYSSPHPWYFTQRYPHHPGYYN-----SFPS 244

Query: 144 HPHPFSALLGRHPA--MAHFMPAA 165
           +P P      R+PA  +AH  PAA
Sbjct: 245 YPAP--TQYPRYPAALVAHLPPAA 266


>gi|301632951|ref|XP_002945543.1| PREDICTED: homeobox protein ceh-1-like [Xenopus (Silurana)
           tropicalis]
          Length = 194

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT +QL++LE +FR  +YLS+ ER   + +LHLTETQVKIWFQNRR K K+ Q
Sbjct: 49  RRARTAFTYEQLVALESRFRSSRYLSVCERLSLALTLHLTETQVKIWFQNRRTKWKKQQ 107


>gi|49170092|ref|NP_990260.1| homeodomain protein [Gallus gallus]
 gi|3777535|gb|AAC64924.1| homeodomain protein [Gallus gallus]
          Length = 300

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 53/69 (76%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR +
Sbjct: 153 SRRPRTAFTSQQLLELENQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSR 212

Query: 101 EAEIEKIKM 109
           +A+ + + +
Sbjct: 213 KAKEQGMAV 221


>gi|300798640|ref|NP_001179591.1| homeobox protein DLX-2 [Bos taurus]
 gi|296490688|tpg|DAA32801.1| TPA: distal-less homeobox 2-like [Bos taurus]
          Length = 331

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 126 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 185

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 186 AASLGLTQTQVKIWFQNRRSKFKKMWKS 213


>gi|311272635|ref|XP_003133525.1| PREDICTED: homeobox protein DLX-2-like [Sus scrofa]
          Length = 328

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 125 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 184

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 185 AASLGLTQTQVKIWFQNRRSKFKKMWKS 212


>gi|63101872|gb|AAH95303.1| Dlx2a protein [Danio rerio]
          Length = 271

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 42/89 (47%), Positives = 66/89 (74%), Gaps = 1/89 (1%)

Query: 15  LSSPLLSDSNKGDP-PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAE 73
            SSP  +D+ K +  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE
Sbjct: 97  CSSPTPADAEKEESEPEIRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAE 156

Query: 74  FSSSLHLTETQVKIWFQNRRAKAKRLQEA 102
            ++SL LT+TQVKIWFQNRR+K K+L ++
Sbjct: 157 LAASLGLTQTQVKIWFQNRRSKFKKLWKS 185


>gi|426337814|ref|XP_004032891.1| PREDICTED: homeobox protein Hox-B3-like [Gorilla gorilla gorilla]
          Length = 192

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 45/63 (71%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+L  
Sbjct: 24  RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRMKEKKLNR 83

Query: 102 AEI 104
             +
Sbjct: 84  DRL 86


>gi|348552206|ref|XP_003461919.1| PREDICTED: homeobox protein HMX1-like [Cavia porcellus]
          Length = 372

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 41/83 (49%), Positives = 50/83 (60%)

Query: 28  PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKI 87
           P  +    R     +K RT F+  Q+  LE  F  K+YLS AERA  ++SL LTETQVKI
Sbjct: 215 PAAVAGEARGGGRKKKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKI 274

Query: 88  WFQNRRAKAKRLQEAEIEKIKMS 110
           WFQNRR K KR   AE+E   +S
Sbjct: 275 WFQNRRNKWKRQLAAELEAASLS 297


>gi|348501180|ref|XP_003438148.1| PREDICTED: homeobox protein GBX-1-like [Oreochromis niloticus]
          Length = 321

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 219 SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 278

Query: 101 EAEI 104
              +
Sbjct: 279 AGNV 282


>gi|322366526|gb|ADW95337.1| NK1 [Paracentrotus lividus]
          Length = 433

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/104 (43%), Positives = 60/104 (57%), Gaps = 12/104 (11%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
           N N +  KP R+ RT FT +QL++LE KF+  +YLS+ ER   + SL LTETQVKIWFQN
Sbjct: 287 NNNAKSSKP-RRARTVFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 345

Query: 92  RRAKAKRLQEA-EIEKIKMSAIAAARPHP----------LYGPG 124
           RR K K+     +      +++ A +P P           YGPG
Sbjct: 346 RRTKWKKQNPGMDPNAPTTTSVTATQPSPPLSAAGLHAAAYGPG 389


>gi|110748626|gb|ABG89866.1| Dlx2b [Synodontis multipunctatus]
          Length = 278

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 59/77 (76%), Gaps = 1/77 (1%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 116 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 175

Query: 89  FQNRRAKAKRL-QEAEI 104
           FQNRR+K K+L +  EI
Sbjct: 176 FQNRRSKFKKLWKNGEI 192


>gi|449268707|gb|EMC79556.1| Homeobox protein GBX-2, partial [Columba livia]
          Length = 174

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 73  NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 132


>gi|444732170|gb|ELW72478.1| Homeobox protein GBX-2 [Tupaia chinensis]
          Length = 322

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 221 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 280


>gi|432917056|ref|XP_004079442.1| PREDICTED: homeobox protein GBX-1-like [Oryzias latipes]
          Length = 322

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 220 SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 279

Query: 101 EAEI 104
              +
Sbjct: 280 AGNV 283


>gi|110748610|gb|ABG89858.1| Dlx2a [Astyanax mexicanus]
          Length = 277

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 67/91 (73%), Gaps = 2/91 (2%)

Query: 16  SSPLLSDSNKGDP-PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           +SP  +D+ K +  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 99  TSPTPADAEKEESEPEIRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 158

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRL-QEAEI 104
           ++SL LT+TQVKIWFQNRR+K K+L +  EI
Sbjct: 159 AASLGLTQTQVKIWFQNRRSKFKKLWKNGEI 189


>gi|11992381|gb|AAG41495.1| homeodomain protein DlxA [Petromyzon marinus]
          Length = 400

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 46/114 (40%), Positives = 70/114 (61%), Gaps = 4/114 (3%)

Query: 32  NVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
            V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIWF
Sbjct: 192 GVRMVNGKPKKIRKPRTIYSSFQLAALQRRFQQTQYLALPERAELAASLGLTQTQVKIWF 251

Query: 90  QNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLH 143
           QNRR+K K+L +        ++ +++ P     P      HQ    A+P  LLH
Sbjct: 252 QNRRSKFKKLGKNGEMAPAQASPSSSDPMACNSPASPGRQHQQLGSAAP--LLH 303


>gi|371779702|emb|CCD31554.1| distal-less [Pholcus phalangioides]
          Length = 350

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/76 (52%), Positives = 56/76 (73%), Gaps = 3/76 (3%)

Query: 30  KLNVNLR---KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           +L  NLR   K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVK
Sbjct: 156 QLEENLRVNGKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVK 215

Query: 87  IWFQNRRAKAKRLQEA 102
           IWFQNRR+K K++ +A
Sbjct: 216 IWFQNRRSKYKKMIKA 231


>gi|331271817|gb|AED02514.1| gastrulation brain homeobox 2 protein [Gallus gallus]
          Length = 147

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 46  NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 105


>gi|226478924|emb|CAX72957.1| Asparagine-rich protein (Ag319) (ARP) (Fragment) [Schistosoma
           japonicum]
          Length = 484

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 38/61 (62%), Positives = 48/61 (78%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE++F   +YLS  +R E ++SL LTETQVKIWFQNRR K KR Q+
Sbjct: 365 RRPRTAFTSQQLLELEQQFISNKYLSRPKRFEVATSLGLTETQVKIWFQNRRMKWKRSQK 424

Query: 102 A 102
           +
Sbjct: 425 S 425


>gi|301616795|ref|XP_002937845.1| PREDICTED: retinal homeobox protein Rx-like [Xenopus (Silurana)
           tropicalis]
          Length = 246

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/59 (59%), Positives = 45/59 (76%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT +QL++LE +FR  +YLS+ ER   + +LHLTETQVKIWFQNRR K K+ Q
Sbjct: 101 RRARTAFTYEQLVALESRFRSSRYLSVCERLSLALTLHLTETQVKIWFQNRRTKWKKQQ 159


>gi|126341054|ref|XP_001363814.1| PREDICTED: homeobox protein GBX-1-like [Monodelphis domestica]
          Length = 424

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 322 SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 381

Query: 101 EAEI 104
              +
Sbjct: 382 AGNV 385


>gi|47220353|emb|CAF98452.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 316

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 217 SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 276

Query: 101 EAEI 104
              +
Sbjct: 277 AGNV 280


>gi|190715304|dbj|BAG49469.1| distal-less [Apis mellifera]
          Length = 261

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 51/66 (77%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K 
Sbjct: 155 KGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKY 214

Query: 97  KRLQEA 102
           K++ +A
Sbjct: 215 KKMMKA 220


>gi|193788683|ref|NP_001123282.1| distal-less homeobox [Strongylocentrotus purpuratus]
 gi|167859060|gb|ACA04465.1| Dlx [Strongylocentrotus purpuratus]
          Length = 411

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 45/93 (48%), Positives = 63/93 (67%), Gaps = 4/93 (4%)

Query: 10  NEILILSS--PLLSDSNKGDPP-KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYL 66
           ++I  LSS   LL   N  D   +  ++LR  K  RKPRT +T+ QL  L ++F + QYL
Sbjct: 101 DQISSLSSKEGLLDHKNDSDTSIETKLSLRG-KKLRKPRTIYTSLQLQQLNQRFHQTQYL 159

Query: 67  SIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
           ++ ERAE ++SL LT+TQVKIWFQNRR+K K++
Sbjct: 160 ALPERAELAASLGLTQTQVKIWFQNRRSKYKKI 192


>gi|259013253|ref|NP_001158371.1| distal-less homeobox 1 [Saccoglossus kowalevskii]
 gi|32307807|gb|AAP79300.1| distalless [Saccoglossus kowalevskii]
          Length = 274

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/87 (47%), Positives = 58/87 (66%), Gaps = 2/87 (2%)

Query: 14  ILSSPLLS-DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERA 72
             +SP +  D       +L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERA
Sbjct: 97  TCTSPTMGRDEKSASENELRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERA 155

Query: 73  EFSSSLHLTETQVKIWFQNRRAKAKRL 99
           E ++SL LT+TQVKIWFQNRR+K K++
Sbjct: 156 ELAASLGLTQTQVKIWFQNRRSKCKKM 182


>gi|2896814|gb|AAC03241.1| homeobox protein [Homo sapiens]
 gi|1588288|prf||2208304A homeobox protein
          Length = 347

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 246 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 305


>gi|241178820|ref|XP_002400237.1| homeobox protein, putative [Ixodes scapularis]
 gi|215495261|gb|EEC04902.1| homeobox protein, putative [Ixodes scapularis]
          Length = 132

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/74 (56%), Positives = 53/74 (71%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +FR  +YLS  +R E +++L LTETQVKIWFQNRR K KR ++
Sbjct: 4   RRPRTAFTSQQLLELENQFRMNKYLSRPKRFEVATNLMLTETQVKIWFQNRRMKWKRSKK 63

Query: 102 AEIEKIKMSAIAAA 115
           A+ E    SA   A
Sbjct: 64  AQQEAKARSADKNA 77


>gi|1934845|emb|CAA68183.1| transcription factor [Cyprinus carpio]
          Length = 190

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 88  SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 147

Query: 101 EAEI 104
              +
Sbjct: 148 AGNV 151


>gi|339240667|ref|XP_003376259.1| homeobox protein HMX1 [Trichinella spiralis]
 gi|316975037|gb|EFV58496.1| homeobox protein HMX1 [Trichinella spiralis]
          Length = 327

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 50/114 (43%), Positives = 68/114 (59%), Gaps = 10/114 (8%)

Query: 17  SPLLSDSNKGDPPKLNVN---LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAE 73
           S +  +++K D  K  V    L K K  +K RT F+  Q+  LE  F  K+YLS AERA 
Sbjct: 157 SEISDETSKTDGKKSRVQSEVLAKRK--KKTRTVFSRNQVFQLETTFDAKRYLSSAERAN 214

Query: 74  FSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSP 127
            ++SL LTETQVKIWFQNRR K KR   A++E   +S++A   P+  +G   +P
Sbjct: 215 LANSLRLTETQVKIWFQNRRNKWKRQMVADLE---VSSLAKMNPN--FGNNSTP 263


>gi|345483131|ref|XP_001601872.2| PREDICTED: homeotic protein distal-less-like [Nasonia vitripennis]
          Length = 410

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 51/66 (77%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K 
Sbjct: 196 KGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKY 255

Query: 97  KRLQEA 102
           K++ +A
Sbjct: 256 KKMMKA 261


>gi|443716437|gb|ELU07962.1| hypothetical protein CAPTEDRAFT_74740, partial [Capitella teleta]
          Length = 231

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/72 (48%), Positives = 53/72 (73%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
           NV +   K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQN
Sbjct: 128 NVRIPNKKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQN 187

Query: 92  RRAKAKRLQEAE 103
           +R+K K++ + +
Sbjct: 188 KRSKCKKIMKQQ 199


>gi|443705253|gb|ELU01908.1| hypothetical protein CAPTEDRAFT_151262 [Capitella teleta]
          Length = 272

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 54/78 (69%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+ RT FT++QLL LEK+F  K+YLS+ ER++ +  L+L+E QVKIWFQNRRAK KR++
Sbjct: 153 TRRRRTAFTSEQLLELEKEFHSKKYLSLTERSQIAHQLNLSEVQVKIWFQNRRAKWKRVK 212

Query: 101 EAEIEKIKMSAIAAARPH 118
              +     S++    P+
Sbjct: 213 AGVVHGRHGSSLHGDNPN 230


>gi|431895752|gb|ELK05171.1| Homeobox protein GBX-1 [Pteropus alecto]
          Length = 312

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 210 SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 269

Query: 101 EAEI 104
              +
Sbjct: 270 AGNV 273


>gi|166865186|dbj|BAG06741.1| homeotic protein distal-less [Athalia rosae]
          Length = 379

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 51/66 (77%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K 
Sbjct: 165 KGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKY 224

Query: 97  KRLQEA 102
           K++ +A
Sbjct: 225 KKMMKA 230


>gi|83318919|emb|CAJ38797.1| Nk1 protein [Platynereis dumerilii]
          Length = 333

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 61/165 (36%), Positives = 84/165 (50%), Gaps = 28/165 (16%)

Query: 15  LSSPLLSDSNKGDPPKLNVN---LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAER 71
            S  L S  N+GD      +    R  KP R+ RT FT +QL++LE KF+  +YLS+ ER
Sbjct: 175 FSMSLDSSKNEGDISDSESDKDGGRGGKP-RRARTAFTYEQLVALENKFKSTRYLSVCER 233

Query: 72  AEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQ 131
              + SL+LTETQVKIWFQNRR K K+ Q   ++ I    I +      +G         
Sbjct: 234 LNLALSLNLTETQVKIWFQNRRTKWKK-QNPGLD-INTPTIPSTPSSSGFG--------- 282

Query: 132 YFQHASPEALLHHPHPFSALLGR--HPAMAHFMPAAPMPQNSPPG 174
                     LHHP+  S+L G+  HP ++    A  + + SPPG
Sbjct: 283 ----------LHHPYSLSSLYGQSLHPYLSSTSGALGLLR-SPPG 316


>gi|432097036|gb|ELK27534.1| Homeobox protein GBX-1 [Myotis davidii]
          Length = 262

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 160 SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 219

Query: 101 EAEI 104
              +
Sbjct: 220 AGNV 223


>gi|46047377|ref|NP_990864.1| homeobox protein HMX1 [Gallus gallus]
 gi|82112982|sp|Q9DE09.1|HMX1_CHICK RecName: Full=Homeobox protein HMX1; AltName: Full=GH6; AltName:
           Full=Homeobox protein H6
 gi|12082651|gb|AAG48561.1|AF227921_1 homeodomain protein GH6 [Gallus gallus]
          Length = 333

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 49/75 (65%)

Query: 36  RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
           R     +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K
Sbjct: 196 RAAGRKKKTRTVFSRSQVFQLESTFDVKRYLSSSERAGLAASLHLTETQVKIWFQNRRNK 255

Query: 96  AKRLQEAEIEKIKMS 110
            KR   A++E   +S
Sbjct: 256 WKRQLAADLEAANLS 270


>gi|110748624|gb|ABG89865.1| Dlx2a [Synodontis multipunctatus]
          Length = 277

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 67/91 (73%), Gaps = 2/91 (2%)

Query: 16  SSPLLSDSNKG-DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           +SP  +D+ K  + P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 99  ASPTPTDAEKEENEPEIRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 158

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRL-QEAEI 104
           ++SL LT+TQVKIWFQNRR+K K+L +  EI
Sbjct: 159 AASLGLTQTQVKIWFQNRRSKFKKLWKNGEI 189


>gi|432881671|ref|XP_004073894.1| PREDICTED: homeobox protein Dlx5a-like isoform 2 [Oryzias latipes]
          Length = 296

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 40/90 (44%), Positives = 63/90 (70%), Gaps = 6/90 (6%)

Query: 10  NEILILSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIA 69
           N +L L+   +S+      P++ +   K K  RKPRT +++ QL +L+++F+  QYL++ 
Sbjct: 124 NALLTLAEKEISE------PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQNTQYLALP 177

Query: 70  ERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
           ERAE ++SL LT+TQVKIWFQNRR+K K++
Sbjct: 178 ERAELAASLGLTQTQVKIWFQNRRSKMKKI 207


>gi|301016681|emb|CAS89759.2| distal-less protein [Parasteatoda tepidariorum]
          Length = 339

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/166 (37%), Positives = 90/166 (54%), Gaps = 18/166 (10%)

Query: 27  DPPKLNVNLR---KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTET 83
           D  +L   LR   K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+T
Sbjct: 150 DKSQLEETLRVNGKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQT 209

Query: 84  QVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQ-----YFQHASP 138
           QVKIWFQNRR+K K++ +A+  +                PG +P++ Q        H  P
Sbjct: 210 QVKIWFQNRRSKYKKMLKAQQNQQNSQQPNQQT------PGSTPNMQQPPNPASTPHTPP 263

Query: 139 EALLHHPHPFSALLGRHPAMAHFMPAAPM--PQNSPPGGS-DMKAS 181
           E+   H  P   +L  +P+ A  MP A +  P  SPP  S DM +S
Sbjct: 264 ESHDAHSPPSVGILPPNPS-AQGMPNATVSPPAMSPPISSWDMASS 308


>gi|327267684|ref|XP_003218629.1| PREDICTED: homeobox protein HMX3-like [Anolis carolinensis]
          Length = 341

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 51/76 (67%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR  
Sbjct: 213 KKKTRTVFSRSQVFQLESTFDLKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQL 272

Query: 101 EAEIEKIKMSAIAAAR 116
            AE+E   +S  AA R
Sbjct: 273 AAELEAAILSHAAAQR 288


>gi|260818166|ref|XP_002603955.1| gastrulation brain homeobox [Branchiostoma floridae]
 gi|90101488|gb|ABD85192.1| gastrulation brain homeobox [Branchiostoma floridae]
 gi|229289280|gb|EEN59966.1| gastrulation brain homeobox [Branchiostoma floridae]
          Length = 252

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 48/64 (75%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 151 TRRRRTAFTSEQLLELEKEFHSKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 210

Query: 101 EAEI 104
               
Sbjct: 211 AGNT 214


>gi|440895422|gb|ELR47613.1| Homeobox protein GBX-1, partial [Bos grunniens mutus]
          Length = 204

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 102 SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 161

Query: 101 EAEI 104
              +
Sbjct: 162 AGNV 165


>gi|76779534|gb|AAI06384.1| Unknown (protein for MGC:130958) [Xenopus laevis]
          Length = 339

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 54/75 (72%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 175 RRPRTAFTSQQLLELEHQFKVNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 234

Query: 102 AEIEKIKMSAIAAAR 116
           A+ +  + SA    R
Sbjct: 235 AKEQAAQDSAEKKQR 249


>gi|395537416|ref|XP_003770697.1| PREDICTED: homeobox protein GBX-2-like [Sarcophilus harrisii]
          Length = 233

 Score = 80.1 bits (196), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 132 NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 191


>gi|195446794|ref|XP_002070926.1| GK25513 [Drosophila willistoni]
 gi|194167011|gb|EDW81912.1| GK25513 [Drosophila willistoni]
          Length = 254

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           KL ++    KP R+ RT FT  QL  LE+KFR ++YLS+A+R++ + +L+L+ETQVK W+
Sbjct: 108 KLQLSKSGRKPRRR-RTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWY 166

Query: 90  QNRRAKAKRLQEAEIEKIKMSA 111
           QNRR K KR  +  +E+++  A
Sbjct: 167 QNRRTKWKRQNQLRLEQLRHQA 188


>gi|292619817|ref|XP_002664095.1| PREDICTED: homeobox protein HMX3-like [Danio rerio]
          Length = 145

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 44/91 (48%), Positives = 56/91 (61%), Gaps = 3/91 (3%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
           L DS   D  +    ++K    +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLH
Sbjct: 31  LEDS---DCEEARAQVKKLCRKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLH 87

Query: 80  LTETQVKIWFQNRRAKAKRLQEAEIEKIKMS 110
           LTETQVKIWFQNRR K KR   AE+E   +S
Sbjct: 88  LTETQVKIWFQNRRNKWKRQIAAELESASLS 118


>gi|440808060|gb|AGC24173.1| Mnx, partial [Sepia officinalis]
          Length = 240

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 46/57 (80%)

Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
          R+PRT FT+QQLL LE++F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR
Sbjct: 35 RRPRTAFTSQQLLELERQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKR 91


>gi|261245043|ref|NP_001158397.1| motor neuron homeobox transcription factor [Saccoglossus
           kowalevskii]
 gi|90659996|gb|ABD97274.1| motor neuron homeobox transcription factor [Saccoglossus
           kowalevskii]
          Length = 300

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/74 (55%), Positives = 51/74 (68%), Gaps = 5/74 (6%)

Query: 34  NLRKHKPN-----RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           +  +H PN     R+PRT FT+QQLL LE +FR+ +YLS  +R E   SL LTETQ KIW
Sbjct: 146 DFGQHTPNLLGKTRRPRTAFTSQQLLELENQFRKNKYLSRPKRFEVXXSLMLTETQXKIW 205

Query: 89  FQNRRAKAKRLQEA 102
           FQNRR K KR ++A
Sbjct: 206 FQNRRMKWKRSKKA 219


>gi|363729608|ref|XP_003640677.1| PREDICTED: homeobox protein GBX-1 [Gallus gallus]
          Length = 326

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 224 SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 283

Query: 101 EAEI 104
              +
Sbjct: 284 AGNV 287


>gi|387538944|gb|AFJ79674.1| distal-less long variant, partial [Microvelia americana]
          Length = 284

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           D   G+   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT
Sbjct: 29  DEKCGEEGGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLT 87

Query: 82  ETQVKIWFQNRRAKAKRL 99
           +TQVKIWFQNRR+K K++
Sbjct: 88  QTQVKIWFQNRRSKYKKM 105


>gi|260826732|ref|XP_002608319.1| nk homeobox 1a [Branchiostoma floridae]
 gi|229293670|gb|EEN64329.1| nk homeobox 1a [Branchiostoma floridae]
          Length = 341

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/73 (54%), Positives = 50/73 (68%), Gaps = 7/73 (9%)

Query: 26  GDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQV 85
           GDP       R  KP R+ RT FT +QL++LE KF++ +YLS+ ER   + SL LTETQV
Sbjct: 206 GDPG------RSGKP-RRARTAFTYEQLVALENKFKQTRYLSVCERLNLALSLSLTETQV 258

Query: 86  KIWFQNRRAKAKR 98
           KIWFQNRR K K+
Sbjct: 259 KIWFQNRRTKWKK 271


>gi|110748612|gb|ABG89859.1| Dlx2b [Astyanax mexicanus]
          Length = 279

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/77 (50%), Positives = 59/77 (76%), Gaps = 1/77 (1%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 113 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 172

Query: 89  FQNRRAKAKRL-QEAEI 104
           FQNRR+K K+L +  EI
Sbjct: 173 FQNRRSKFKKLWKNGEI 189


>gi|157128276|ref|XP_001661378.1| hypothetical protein AaeL_AAEL002355 [Aedes aegypti]
 gi|108882265|gb|EAT46490.1| AAEL002355-PA [Aedes aegypti]
          Length = 300

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 33/66 (50%), Positives = 49/66 (74%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           ++PRT F+  Q+ +LE +F   +YLS+A+R   + SLHLTETQ+KIWFQNRR K KR   
Sbjct: 23  KRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKSLHLTETQIKIWFQNRRTKWKRKYT 82

Query: 102 AEIEKI 107
           +++E++
Sbjct: 83  SDVEQL 88


>gi|57527993|ref|NP_001009577.1| homeobox transcription factor Nk1 [Strongylocentrotus purpuratus]
 gi|42795449|gb|AAS46234.1| homeobox transcription factor Nk1 [Strongylocentrotus purpuratus]
          Length = 432

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 48/67 (71%), Gaps = 1/67 (1%)

Query: 32  NVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
           N N +  KP R+ RT FT +QL++LE KF+  +YLS+ ER   + SL LTETQVKIWFQN
Sbjct: 286 NNNAKSSKP-RRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQN 344

Query: 92  RRAKAKR 98
           RR K K+
Sbjct: 345 RRTKWKK 351


>gi|321469427|gb|EFX80407.1| hypothetical protein DAPPUDRAFT_8513 [Daphnia pulex]
          Length = 65

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/62 (62%), Positives = 50/62 (80%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +FR+ +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 4   RRPRTAFTSQQLLELENQFRQNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 63

Query: 102 AE 103
           A+
Sbjct: 64  AQ 65


>gi|196259820|ref|NP_001124509.1| distal-less [Apis mellifera]
          Length = 364

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 51/66 (77%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K 
Sbjct: 155 KGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKY 214

Query: 97  KRLQEA 102
           K++ +A
Sbjct: 215 KKMMKA 220


>gi|307166892|gb|EFN60800.1| Homeobox protein GBX-1 [Camponotus floridanus]
          Length = 460

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 56/87 (64%), Gaps = 3/87 (3%)

Query: 14  ILSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAE 73
           + +SP  S  N  +    N    K    R+ RT FT++QLL LE++F  K+YLS+ ER+ 
Sbjct: 237 VTTSPSRSLENGQNSSTSNTGGNK---ARRRRTAFTSEQLLELEREFHAKKYLSLTERSH 293

Query: 74  FSSSLHLTETQVKIWFQNRRAKAKRLQ 100
            + +L L+E QVKIWFQNRRAK KR++
Sbjct: 294 IAHALKLSEVQVKIWFQNRRAKWKRVK 320


>gi|91077574|ref|XP_972824.1| PREDICTED: similar to CG11085 CG11085-PA [Tribolium castaneum]
          Length = 171

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 59/89 (66%), Gaps = 1/89 (1%)

Query: 23  SNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTE 82
           S  G P   +   +  KP R+ RT FT  QL  LE+KFR ++YLS+A+R++ + +L+L+E
Sbjct: 25  STVGGPENSSEAAKGRKPRRR-RTAFTHAQLAYLERKFRCQKYLSVADRSDVADALNLSE 83

Query: 83  TQVKIWFQNRRAKAKRLQEAEIEKIKMSA 111
           TQVK W+QNRR K KR  +  +E+++  A
Sbjct: 84  TQVKTWYQNRRTKWKRQNQLRLEQLRHQA 112


>gi|410901373|ref|XP_003964170.1| PREDICTED: homeobox protein Nkx-2.5-like [Takifugu rubripes]
          Length = 333

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/82 (47%), Positives = 52/82 (63%), Gaps = 2/82 (2%)

Query: 17  SPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
            PLL D    D  K    +++ +  RKPR  F+  Q+  LE++F++++YLS  ER   +S
Sbjct: 130 GPLLGDCEDQDADK--PAMKQQRTRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLAS 187

Query: 77  SLHLTETQVKIWFQNRRAKAKR 98
           SL LT TQVKIWFQNRR K KR
Sbjct: 188 SLKLTSTQVKIWFQNRRYKCKR 209


>gi|350403353|ref|XP_003486776.1| PREDICTED: hypothetical protein LOC100745968, partial [Bombus
           impatiens]
          Length = 377

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 51/66 (77%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K 
Sbjct: 163 KGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKY 222

Query: 97  KRLQEA 102
           K++ +A
Sbjct: 223 KKMMKA 228


>gi|322790723|gb|EFZ15467.1| hypothetical protein SINV_04888 [Solenopsis invicta]
          Length = 410

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 48/72 (66%)

Query: 39  KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           K  +K RT F+  Q+  LE  F  K+YLS +ERA  ++SL LTETQVKIWFQNRR K KR
Sbjct: 209 KRKKKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKR 268

Query: 99  LQEAEIEKIKMS 110
              AE+E   M+
Sbjct: 269 QLAAELEAANMA 280


>gi|351713559|gb|EHB16478.1| Homeobox protein DLX-3 [Heterocephalus glaber]
          Length = 436

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 264 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 323

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 324 IWFQNRRSKFKKL 336


>gi|270001577|gb|EEZ98024.1| hypothetical protein TcasGA2_TC000424 [Tribolium castaneum]
          Length = 190

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 39/89 (43%), Positives = 59/89 (66%), Gaps = 1/89 (1%)

Query: 23  SNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTE 82
           S  G P   +   +  KP R+ RT FT  QL  LE+KFR ++YLS+A+R++ + +L+L+E
Sbjct: 44  STVGGPENSSEAAKGRKPRRR-RTAFTHAQLAYLERKFRCQKYLSVADRSDVADALNLSE 102

Query: 83  TQVKIWFQNRRAKAKRLQEAEIEKIKMSA 111
           TQVK W+QNRR K KR  +  +E+++  A
Sbjct: 103 TQVKTWYQNRRTKWKRQNQLRLEQLRHQA 131


>gi|313151199|ref|NP_001009886.2| homeo box HB9 like a [Danio rerio]
 gi|190338080|gb|AAI62692.1| Homeo box HB9 like a [Danio rerio]
 gi|190338092|gb|AAI62717.1| Homeo box HB9 like a [Danio rerio]
          Length = 309

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 151 RRPRTAFTSQQLLELENQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRK 210

Query: 102 AE 103
           A+
Sbjct: 211 AK 212


>gi|41400302|gb|AAS07019.1| homeodomain protein Mnr2a [Danio rerio]
          Length = 309

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 151 RRPRTAFTSQQLLELENQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRK 210

Query: 102 AE 103
           A+
Sbjct: 211 AK 212


>gi|467816|gb|AAA17406.1| homeobox protein, partial [Homo sapiens]
          Length = 133

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 36/60 (60%), Positives = 49/60 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           NR+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 32  NRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVK 91


>gi|355779575|gb|EHH64051.1| Homeobox protein NK-2-like protein F [Macaca fascicularis]
          Length = 301

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 10/119 (8%)

Query: 18  PLLSDSNKGDPPKLNVNLR-KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
           P     N GD  +   + + K +  RKPR  F+  Q+L+LE++F++++YLS  ER   +S
Sbjct: 108 PECGVGNGGDSVRGGCSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLAS 167

Query: 77  SLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR---------PHPLYGPGPS 126
           +L LT TQVKIWFQNRR K KR ++ +  ++    +   R           P  GPGPS
Sbjct: 168 ALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGHPLTPRRVAXXXLVRDGKPCLGPGPS 226


>gi|199581471|gb|ACH89437.1| NK-like homeobox protein 5 [Capitella teleta]
          Length = 402

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 46/64 (71%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 255 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 314

Query: 102 AEIE 105
           A+IE
Sbjct: 315 ADIE 318


>gi|340723302|ref|XP_003400030.1| PREDICTED: homeotic protein distal-less-like [Bombus terrestris]
          Length = 408

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 51/66 (77%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K 
Sbjct: 194 KGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKY 253

Query: 97  KRLQEA 102
           K++ +A
Sbjct: 254 KKMMKA 259


>gi|300433310|gb|ADK13097.1| gastrulation brain homeobox protein [Branchiostoma lanceolatum]
          Length = 245

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/61 (57%), Positives = 48/61 (78%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++ 
Sbjct: 155 RRRRTAFTSEQLLELEKEFHSKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRVKA 214

Query: 102 A 102
            
Sbjct: 215 G 215


>gi|449275347|gb|EMC84219.1| Motor neuron and pancreas homeobox protein 1, partial [Columba
           livia]
          Length = 159

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 42/79 (53%), Positives = 56/79 (70%), Gaps = 3/79 (3%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 12  RRPRTAFTSQQLLELENQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRK 71

Query: 102 AEIEKIKMSAIAAARPHPL 120
           A   K + + + A +P  L
Sbjct: 72  A---KEQGAQVEAEKPRGL 87


>gi|383857539|ref|XP_003704262.1| PREDICTED: uncharacterized protein LOC100878597 isoform 1
           [Megachile rotundata]
          Length = 381

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 51/66 (77%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K 
Sbjct: 167 KGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKY 226

Query: 97  KRLQEA 102
           K++ +A
Sbjct: 227 KKMMKA 232


>gi|332017723|gb|EGI58397.1| Homeobox protein GBX-2 [Acromyrmex echinatior]
          Length = 271

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+YLS+ ER+  + +L L+E QVKIWFQNRRAK KR++
Sbjct: 75  RRRRTAFTSEQLLELEREFHAKKYLSLTERSHIAHALKLSEVQVKIWFQNRRAKWKRVK 133


>gi|149639675|ref|XP_001514642.1| PREDICTED: homeobox protein DLX-2-like [Ornithorhynchus anatinus]
          Length = 308

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 58/74 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 135 PEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 194

Query: 89  FQNRRAKAKRLQEA 102
           FQNRR+K K++ ++
Sbjct: 195 FQNRRSKFKKMWKS 208


>gi|90739270|gb|ABD97849.1| distal-less [Tetranychus urticae]
          Length = 248

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/67 (52%), Positives = 53/67 (79%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K+K N KPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIW QN+R+K 
Sbjct: 30  KNKKNWKPRTIYSSIQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWLQNKRSKN 89

Query: 97  KRLQEAE 103
           K++Q+A+
Sbjct: 90  KKMQKAQ 96


>gi|355697806|gb|EHH28354.1| Homeobox protein NK-2-like protein F [Macaca mulatta]
          Length = 301

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 10/119 (8%)

Query: 18  PLLSDSNKGDPPKLNVNLR-KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
           P     N GD  +   + + K +  RKPR  F+  Q+L+LE++F++++YLS  ER   +S
Sbjct: 108 PECGVGNGGDSVRGGCSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLAS 167

Query: 77  SLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR---------PHPLYGPGPS 126
           +L LT TQVKIWFQNRR K KR ++ +  ++    +   R           P  GPGPS
Sbjct: 168 ALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGHPLTPRRVAVPVLVRDGKPCLGPGPS 226


>gi|380017411|ref|XP_003692650.1| PREDICTED: homeotic protein distal-less-like isoform 2 [Apis
           florea]
          Length = 408

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 51/66 (77%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K 
Sbjct: 194 KGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKY 253

Query: 97  KRLQEA 102
           K++ +A
Sbjct: 254 KKMMKA 259


>gi|322799112|gb|EFZ20565.1| hypothetical protein SINV_80428 [Solenopsis invicta]
          Length = 230

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+YLS+ ER+  + +L L+E QVKIWFQNRRAK KR++
Sbjct: 44  RRRRTAFTSEQLLELEREFHAKKYLSLTERSHIAHALKLSEVQVKIWFQNRRAKWKRVK 102


>gi|383861787|ref|XP_003706366.1| PREDICTED: uncharacterized protein LOC100878572 [Megachile
           rotundata]
          Length = 448

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+YLS+ ER+  + +L L+E QVKIWFQNRRAK KR++
Sbjct: 257 RRRRTAFTSEQLLELEREFHAKKYLSLTERSHIAHALKLSEVQVKIWFQNRRAKWKRVK 315


>gi|46487180|gb|AAS98967.1| Dlx-like homeodomain protein [Oikopleura dioica]
          Length = 385

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 79/149 (53%), Gaps = 16/149 (10%)

Query: 44  PRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL--QE 101
           PRT +++ QL  L K+F + QYL++ ERAE ++SL LT+TQVKIWFQNRR+K K++  Q 
Sbjct: 102 PRTIYSSLQLQELNKRFNQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKIMKQG 161

Query: 102 AEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHHPHPFSALLGRHPAMAHF 161
               KI+    + A      G           +H+SP A        S++L +   M   
Sbjct: 162 GVSVKIENDGGSPAGSGDEAGANGEDDEENQSEHSSPNA--------SSILNQSNGM--- 210

Query: 162 MPAAPMPQNSPPGGSDMKASPPRPSPSPT 190
           MP +P   +S PG +     P  PS SPT
Sbjct: 211 MPRSP---SSIPGSNLGSNLPSMPSGSPT 236


>gi|380017409|ref|XP_003692649.1| PREDICTED: homeotic protein distal-less-like isoform 1 [Apis
           florea]
          Length = 393

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 51/66 (77%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K 
Sbjct: 184 KGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKY 243

Query: 97  KRLQEA 102
           K++ +A
Sbjct: 244 KKMMKA 249


>gi|410901937|ref|XP_003964451.1| PREDICTED: homeobox protein Dlx3b-like [Takifugu rubripes]
          Length = 328

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/82 (50%), Positives = 56/82 (68%), Gaps = 3/82 (3%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSS 77
           L D  K + P   V +   KP   RKPRT +++ QL  L++KF+  QYL++ ERAE ++ 
Sbjct: 119 LQDDVK-EEPDTEVRMVNGKPKKVRKPRTIYSSYQLAVLQRKFQTAQYLALPERAELAAQ 177

Query: 78  LHLTETQVKIWFQNRRAKAKRL 99
           L LT+TQVKIWFQNRR+K K+L
Sbjct: 178 LGLTQTQVKIWFQNRRSKFKKL 199


>gi|405956964|gb|EKC23204.1| Homeobox protein GBX-1 [Crassostrea gigas]
          Length = 329

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/63 (57%), Positives = 48/63 (76%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+ RT FT++QLL LEK+F  K+YLS+ ER+  + +L L+E QVKIWFQNRRAK KR++ 
Sbjct: 214 RRRRTAFTSEQLLELEKEFHSKKYLSLTERSHIAHNLKLSEVQVKIWFQNRRAKWKRVKA 273

Query: 102 AEI 104
             I
Sbjct: 274 GMI 276


>gi|350419480|ref|XP_003492195.1| PREDICTED: hypothetical protein LOC100747655 [Bombus impatiens]
          Length = 449

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+YLS+ ER+  + +L L+E QVKIWFQNRRAK KR++
Sbjct: 258 RRRRTAFTSEQLLELEREFHAKKYLSLTERSHIAHALKLSEVQVKIWFQNRRAKWKRVK 316


>gi|126343652|ref|XP_001363081.1| PREDICTED: homeobox protein DLX-5-like [Monodelphis domestica]
          Length = 292

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 58/78 (74%), Gaps = 1/78 (1%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           D +  +P    VN +  K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT
Sbjct: 125 DKDAAEPEVRMVNGKPKK-VRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLT 183

Query: 82  ETQVKIWFQNRRAKAKRL 99
           +TQVKIWFQN+R+K K++
Sbjct: 184 QTQVKIWFQNKRSKIKKI 201


>gi|47933422|gb|AAT39335.1| distal-less [Oikopleura dioica]
          Length = 380

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 79/149 (53%), Gaps = 16/149 (10%)

Query: 44  PRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL--QE 101
           PRT +++ QL  L K+F + QYL++ ERAE ++SL LT+TQVKIWFQNRR+K K++  Q 
Sbjct: 97  PRTIYSSLQLQELNKRFNQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKIMKQG 156

Query: 102 AEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHHPHPFSALLGRHPAMAHF 161
               KI+    + A      G           +H+SP A        S++L +   M   
Sbjct: 157 GVSVKIENDGGSPAGSGDEAGANGEDDEENQSEHSSPNA--------SSILNQSNGM--- 205

Query: 162 MPAAPMPQNSPPGGSDMKASPPRPSPSPT 190
           MP +P   +S PG +     P  PS SPT
Sbjct: 206 MPRSP---SSIPGSNLGSNLPSMPSGSPT 231


>gi|433709|gb|AAA17047.1| homeobox protein [Gallus gallus]
          Length = 368

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 49/72 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 199 KKTRTVFSRSQVFQLESTFDVKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRHVA 258

Query: 102 AEIEKIKMSAIA 113
           A++E   +S  A
Sbjct: 259 ADLEAANLSHAA 270


>gi|348562247|ref|XP_003466922.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein DLX-3-like [Cavia
           porcellus]
          Length = 287

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 175 IWFQNRRSKFKKL 187


>gi|3265163|gb|AAC24873.1| motor neuron marker xHB9 [Xenopus laevis]
          Length = 261

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 54/75 (72%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 97  RRPRTAFTSQQLLELEHQFKVNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 156

Query: 102 AEIEKIKMSAIAAAR 116
           A+ +  + SA    R
Sbjct: 157 AKEQAAQDSAEKQQR 171


>gi|73966333|ref|XP_548193.2| PREDICTED: homeobox protein DLX-3 isoform 1 [Canis lupus
           familiaris]
          Length = 287

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 175 IWFQNRRSKFKKL 187


>gi|3036961|dbj|BAA25399.1| CsNKX [Ciona savignyi]
          Length = 595

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 41/103 (39%), Positives = 61/103 (59%), Gaps = 13/103 (12%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           +H+  RKPR  F+  Q+  LE++F++++YLS  ER   +  L LT TQVKIWFQNRR K 
Sbjct: 366 RHRTRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLAQMLKLTSTQVKIWFQNRRYKC 425

Query: 97  KRLQEAEIEKIKMSAIAAAR-----------PHPLYGPGPSPH 128
           KR+++ +   +++++I A R              L GPG  PH
Sbjct: 426 KRMRQDKT--LELASIGAPRRVAVPVLVRDGKSCLGGPGQVPH 466


>gi|383857541|ref|XP_003704263.1| PREDICTED: uncharacterized protein LOC100878597 isoform 2
           [Megachile rotundata]
          Length = 366

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 51/66 (77%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K 
Sbjct: 157 KGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKY 216

Query: 97  KRLQEA 102
           K++ +A
Sbjct: 217 KKMMKA 222


>gi|332209321|ref|XP_003253760.1| PREDICTED: homeobox protein DLX-2 [Nomascus leucogenys]
          Length = 327

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 58/74 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 139 PEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 198

Query: 89  FQNRRAKAKRLQEA 102
           FQNRR+K K++ ++
Sbjct: 199 FQNRRSKFKKMWKS 212


>gi|56385109|gb|AAV85985.1| Dlx3 [Triakis semifasciata]
          Length = 276

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+K+F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 120 PEVRIVNGKPKKIRKPRTIYSSFQLAALQKRFQKAQYLALPERAELAASLGLTQTQVKIW 179

Query: 89  FQNRRAKAKRL 99
           FQNRR+K K+L
Sbjct: 180 FQNRRSKFKKL 190


>gi|242004279|ref|XP_002423032.1| Homeotic protein distal-less, putative [Pediculus humanus corporis]
 gi|212505963|gb|EEB10294.1| Homeotic protein distal-less, putative [Pediculus humanus corporis]
          Length = 377

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 54/72 (75%), Gaps = 1/72 (1%)

Query: 31  LNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90
           L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQ
Sbjct: 171 LRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQ 229

Query: 91  NRRAKAKRLQEA 102
           NRR+K K++ +A
Sbjct: 230 NRRSKYKKMMKA 241


>gi|357614122|gb|EHJ68922.1| hypothetical protein KGM_06193 [Danaus plexippus]
          Length = 190

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 35/75 (46%), Positives = 53/75 (70%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+ RT FT  QL  LE+KFR ++YLS+A+R + + +L+L+ETQVK W+QNRR K KR  +
Sbjct: 91  RRRRTAFTHAQLAYLERKFRCQKYLSVADRGDVADALNLSETQVKTWYQNRRTKWKRQNQ 150

Query: 102 AEIEKIKMSAIAAAR 116
             +E+++  A +  R
Sbjct: 151 LRLEQLRAQAASGER 165


>gi|380028639|ref|XP_003698001.1| PREDICTED: uncharacterized protein LOC100873060 [Apis florea]
          Length = 449

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+YLS+ ER+  + +L L+E QVKIWFQNRRAK KR++
Sbjct: 258 RRRRTAFTSEQLLELEREFHAKKYLSLTERSHIAHALKLSEVQVKIWFQNRRAKWKRVK 316


>gi|328791759|ref|XP_001121332.2| PREDICTED: hypothetical protein LOC725495 [Apis mellifera]
          Length = 453

 Score = 79.3 bits (194), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+YLS+ ER+  + +L L+E QVKIWFQNRRAK KR++
Sbjct: 262 RRRRTAFTSEQLLELEREFHAKKYLSLTERSHIAHALKLSEVQVKIWFQNRRAKWKRVK 320


>gi|148236492|ref|NP_001090292.1| motor neuron and pancreas homeobox 1 [Xenopus laevis]
 gi|80476477|gb|AAI08590.1| Hlxb9 protein [Xenopus laevis]
          Length = 333

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 41/75 (54%), Positives = 54/75 (72%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 170 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 229

Query: 102 AEIEKIKMSAIAAAR 116
           A+ +  + SA    R
Sbjct: 230 AKEQAAQDSAEKQQR 244


>gi|348516633|ref|XP_003445842.1| PREDICTED: motor neuron and pancreas homeobox protein 1-like
           [Oreochromis niloticus]
          Length = 336

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 156 RRPRTAFTSQQLLELENQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRK 215

Query: 102 AE 103
           A+
Sbjct: 216 AK 217


>gi|340709661|ref|XP_003393421.1| PREDICTED: hypothetical protein LOC100642916 [Bombus terrestris]
          Length = 449

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+YLS+ ER+  + +L L+E QVKIWFQNRRAK KR++
Sbjct: 258 RRRRTAFTSEQLLELEREFHAKKYLSLTERSHIAHALKLSEVQVKIWFQNRRAKWKRVK 316


>gi|194217095|ref|XP_001918229.1| PREDICTED: homeobox protein DLX-3-like [Equus caballus]
          Length = 287

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 175 IWFQNRRSKFKKL 187


>gi|432851987|ref|XP_004067139.1| PREDICTED: uncharacterized protein LOC101159569 isoform 1 [Oryzias
           latipes]
          Length = 333

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 54/75 (72%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 152 RRPRTAFTSQQLLELENQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRK 211

Query: 102 AEIEKIKMSAIAAAR 116
           A+ +    + + + R
Sbjct: 212 AKEQAAASNQVESER 226


>gi|426222483|ref|XP_004005420.1| PREDICTED: homeobox protein DLX-2 [Ovis aries]
          Length = 407

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 42/91 (46%), Positives = 65/91 (71%), Gaps = 2/91 (2%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 117 SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 176

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRL-QEAEI 104
           ++SL LT+TQ KIWFQNRR+K K++ +  EI
Sbjct: 177 AASLGLTQTQAKIWFQNRRSKFKKMWKSGEI 207


>gi|195478007|ref|XP_002100374.1| GE17019 [Drosophila yakuba]
 gi|194187898|gb|EDX01482.1| GE17019 [Drosophila yakuba]
          Length = 276

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           KL ++    KP R+ RT FT  QL  LE+KFR ++YLS+A+R++ + +L+L+ETQVK W+
Sbjct: 131 KLQLSKSGRKPRRR-RTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWY 189

Query: 90  QNRRAKAKRLQEAEIEKIKMSA 111
           QNRR K KR  +  +E+++  A
Sbjct: 190 QNRRTKWKRQNQLRLEQLRHQA 211


>gi|444517732|gb|ELV11750.1| Homeobox protein DLX-3 [Tupaia chinensis]
          Length = 286

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 114 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 173

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 174 IWFQNRRSKFKKL 186


>gi|410912452|ref|XP_003969703.1| PREDICTED: homeobox protein XHOX-7.1-like [Takifugu rubripes]
          Length = 324

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/83 (53%), Positives = 56/83 (67%), Gaps = 3/83 (3%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 147 RRPRTAFTSQQLLELENQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRK 206

Query: 102 AEIEKIKMSAIAAARPHPLYGPG 124
           A   K +  A A +    L G G
Sbjct: 207 A---KEQAGASAQSDMQRLRGEG 226


>gi|159155041|gb|AAI54567.1| Hmx1 protein [Danio rerio]
          Length = 164

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 48/69 (69%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 33  KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 92

Query: 102 AEIEKIKMS 110
           A++E +  +
Sbjct: 93  ADLEAVNFN 101


>gi|158286363|ref|XP_308706.3| AGAP007058-PA [Anopheles gambiae str. PEST]
 gi|157020433|gb|EAA03995.4| AGAP007058-PA [Anopheles gambiae str. PEST]
          Length = 302

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/72 (54%), Positives = 54/72 (75%), Gaps = 1/72 (1%)

Query: 31  LNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90
           L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQ
Sbjct: 102 LRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQ 160

Query: 91  NRRAKAKRLQEA 102
           NRR+K K++ +A
Sbjct: 161 NRRSKYKKMMKA 172


>gi|440910498|gb|ELR60292.1| Homeobox protein DLX-3 [Bos grunniens mutus]
          Length = 287

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 175 IWFQNRRSKFKKL 187


>gi|431890771|gb|ELK01650.1| Homeobox protein DLX-3 [Pteropus alecto]
          Length = 287

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 175 IWFQNRRSKFKKL 187


>gi|4885185|ref|NP_005211.1| homeobox protein DLX-3 [Homo sapiens]
 gi|109114292|ref|XP_001095325.1| PREDICTED: homeobox protein DLX-3 [Macaca mulatta]
 gi|114669244|ref|XP_511871.2| PREDICTED: homeobox protein DLX-3 [Pan troglodytes]
 gi|297716011|ref|XP_002834329.1| PREDICTED: homeobox protein DLX-3 [Pongo abelii]
 gi|395826662|ref|XP_003786535.1| PREDICTED: homeobox protein DLX-3 [Otolemur garnettii]
 gi|397493237|ref|XP_003817518.1| PREDICTED: homeobox protein DLX-3 [Pan paniscus]
 gi|426347713|ref|XP_004041492.1| PREDICTED: homeobox protein DLX-3 [Gorilla gorilla gorilla]
 gi|3913487|sp|O60479.1|DLX3_HUMAN RecName: Full=Homeobox protein DLX-3
 gi|3068594|gb|AAC14397.1| distal-less homeobox protein [Homo sapiens]
 gi|15214475|gb|AAH12361.1| Distal-less homeobox 3 [Homo sapiens]
 gi|19849184|gb|AAL99504.1| distal-less homeo box 3 [Homo sapiens]
 gi|20810406|gb|AAH28970.1| Distal-less homeobox 3 [Homo sapiens]
 gi|119615056|gb|EAW94650.1| distal-less homeobox 3 [Homo sapiens]
 gi|123982820|gb|ABM83151.1| distal-less homeobox 3 [synthetic construct]
 gi|123997499|gb|ABM86351.1| distal-less homeobox 3 [synthetic construct]
 gi|193786755|dbj|BAG52078.1| unnamed protein product [Homo sapiens]
 gi|208966136|dbj|BAG73082.1| distal-less homeobox 3 [synthetic construct]
 gi|355568509|gb|EHH24790.1| hypothetical protein EGK_08510 [Macaca mulatta]
 gi|355753980|gb|EHH57945.1| hypothetical protein EGM_07696 [Macaca fascicularis]
 gi|410292496|gb|JAA24848.1| distal-less homeobox 3 [Pan troglodytes]
 gi|410337989|gb|JAA37941.1| distal-less homeobox 3 [Pan troglodytes]
          Length = 287

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 175 IWFQNRRSKFKKL 187


>gi|18858557|ref|NP_571372.1| homeobox protein Dlx2b [Danio rerio]
 gi|2842748|sp|Q98876.1|DLX2B_DANRE RecName: Full=Homeobox protein Dlx2b; AltName: Full=DLX-5; AltName:
           Full=Distal-less homeobox protein 2b
 gi|1620516|gb|AAC60026.1| Dlx5 [Danio rerio]
 gi|134025275|gb|AAI34900.1| Distal-less homeobox gene 2b [Danio rerio]
          Length = 276

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 54/67 (80%), Gaps = 1/67 (1%)

Query: 39  KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIWFQNRR+K K+
Sbjct: 123 KKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKK 182

Query: 99  L-QEAEI 104
           L +  EI
Sbjct: 183 LWKNGEI 189


>gi|47230602|emb|CAF99795.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 399

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 44/85 (51%), Positives = 57/85 (67%), Gaps = 3/85 (3%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 280 RRPRTAFTSQQLLELENQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRK 339

Query: 102 AEIEKIKMSAIAAARPHPLYGPGPS 126
           A   K +  A A +    L G G +
Sbjct: 340 A---KEQAGAPAQSDAQQLRGEGKT 361


>gi|351703114|gb|EHB06033.1| Homeobox protein Nkx-2.6 [Heterocephalus glaber]
          Length = 296

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 49/65 (75%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K +P RKPR  F+  Q+L+LE++F++++YLS  ER   +S+L LT TQVKIWFQNRR K 
Sbjct: 127 KTRPRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKC 186

Query: 97  KRLQE 101
           KR ++
Sbjct: 187 KRQRQ 191


>gi|56714063|gb|AAW24002.1| homeodomain protein Dlx-c [Oikopleura dioica]
          Length = 371

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 56/149 (37%), Positives = 79/149 (53%), Gaps = 16/149 (10%)

Query: 44  PRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL--QE 101
           PRT +++ QL  L K+F + QYL++ ERAE ++SL LT+TQVKIWFQNRR+K K++  Q 
Sbjct: 88  PRTIYSSLQLQELNKRFNQTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKIMKQG 147

Query: 102 AEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHHPHPFSALLGRHPAMAHF 161
               KI+    + A      G           +H+SP A        S++L +   M   
Sbjct: 148 GVSVKIENDGGSPAGSGDEAGANGEDDEENQSEHSSPNA--------SSILNQSNGM--- 196

Query: 162 MPAAPMPQNSPPGGSDMKASPPRPSPSPT 190
           MP +P   +S PG +     P  PS SPT
Sbjct: 197 MPRSP---SSIPGSNLGSNLPSMPSGSPT 222


>gi|256076183|ref|XP_002574393.1| homeobox protein distal-less dlx [Schistosoma mansoni]
 gi|350646144|emb|CCD59191.1| homeobox protein distal-less dlx,putative [Schistosoma mansoni]
          Length = 955

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 39/67 (58%), Positives = 51/67 (76%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
           +N  K+K  RKPRT +++ QL  L K+F   QYLS+ ERAE ++SL LT+TQVKIWFQNR
Sbjct: 463 INHEKNKKLRKPRTIYSSMQLQQLAKRFHLTQYLSLPERAELAASLGLTQTQVKIWFQNR 522

Query: 93  RAKAKRL 99
           R+K K+L
Sbjct: 523 RSKFKKL 529


>gi|440546380|dbj|BAG14363.2| homeobox-containing Dlx3 [Scyliorhinus torazame]
          Length = 256

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+K+F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 120 PEVRIVNGKPKKIRKPRTIYSSFQLAALQKRFQKAQYLALPERAELAASLGLTQTQVKIW 179

Query: 89  FQNRRAKAKRL 99
           FQNRR+K K+L
Sbjct: 180 FQNRRSKFKKL 190


>gi|296202498|ref|XP_002806898.1| PREDICTED: LOW QUALITY PROTEIN: homeobox protein DLX-3 [Callithrix
           jacchus]
 gi|403279549|ref|XP_003931310.1| PREDICTED: homeobox protein DLX-3 [Saimiri boliviensis boliviensis]
          Length = 287

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 175 IWFQNRRSKFKKL 187


>gi|291405818|ref|XP_002719343.1| PREDICTED: distal-less homeobox 3 [Oryctolagus cuniculus]
          Length = 287

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 175 IWFQNRRSKFKKL 187


>gi|125991868|ref|NP_001075091.1| homeobox protein DLX-3 [Bos taurus]
 gi|124828971|gb|AAI33326.1| Distal-less homeobox 3 [Bos taurus]
 gi|224037828|gb|ACN38064.1| distal-less homeobox 3 [Ovis aries]
 gi|296476510|tpg|DAA18625.1| TPA: distal-less homeobox 3 [Bos taurus]
          Length = 287

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 175 IWFQNRRSKFKKL 187


>gi|297299095|ref|XP_001108914.2| PREDICTED: homeobox protein Nkx-2.6-like [Macaca mulatta]
          Length = 501

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 45/119 (37%), Positives = 66/119 (55%), Gaps = 10/119 (8%)

Query: 18  PLLSDSNKGDPPKLNVNLR-KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
           P     N GD  +   + + K +  RKPR  F+  Q+L+LE++F++++YLS  ER   +S
Sbjct: 308 PECGVGNGGDSVRGGCSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLAS 367

Query: 77  SLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAAR---------PHPLYGPGPS 126
           +L LT TQVKIWFQNRR K KR ++ +  ++    +   R           P  GPGPS
Sbjct: 368 ALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGHPLTPRRVAVPVLVRDGKPCLGPGPS 426


>gi|156387536|ref|XP_001634259.1| predicted protein [Nematostella vectensis]
 gi|156221340|gb|EDO42196.1| predicted protein [Nematostella vectensis]
          Length = 74

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 56/73 (76%), Gaps = 2/73 (2%)

Query: 36  RKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
           RK K N  R+ RT FT++Q L LE +F + +Y++ + R E ++ L+LTETQVKIWFQNRR
Sbjct: 2   RKRKENKPRRQRTTFTSEQTLKLELEFHQNEYITRSRRFELAACLNLTETQVKIWFQNRR 61

Query: 94  AKAKRLQEAEIEK 106
           AK KRL++A++E+
Sbjct: 62  AKDKRLEKAQMEQ 74


>gi|6753648|ref|NP_034185.1| homeobox protein DLX-3 [Mus musculus]
 gi|2495277|sp|Q64205.1|DLX3_MOUSE RecName: Full=Homeobox protein DLX-3
 gi|1470297|gb|AAB33879.1| Distal-less homeobox gene [Mus sp.]
 gi|19849181|gb|AAL99502.1| distal-less homeo box 3 [Mus musculus]
 gi|37589058|gb|AAH58852.1| Distal-less homeobox 3 [Mus musculus]
 gi|148684020|gb|EDL15967.1| distal-less homeobox 3 [Mus musculus]
          Length = 287

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 175 IWFQNRRSKFKKL 187


>gi|51317918|gb|AAU00059.1| barH-class homeodomain transcription factor 3 [Danio rerio]
          Length = 299

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 74/150 (49%), Gaps = 28/150 (18%)

Query: 34  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
           N R  KP RK RT FT  QL  LE+ F  ++YLS+ +R E ++SL+LT+TQVK W+QNRR
Sbjct: 149 NSRLKKP-RKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRR 207

Query: 94  AKAKRLQEAEIEKI----KMSAIAAARPHPLYGP-------GPSPHLHQYFQHAS----- 137
            K KR     +E +      SA+    P P + P        P P L+ Y   ++     
Sbjct: 208 TKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGPGLYLYRGPSAPPPPV 267

Query: 138 -----PEALLH------HPHPFSALLGRHP 156
                P  LLH       P   S ++ RHP
Sbjct: 268 QRPLVPRILLHGLQGGGDPASLSGVIPRHP 297


>gi|157786674|ref|NP_001099302.1| distal-less homeobox 3 [Rattus norvegicus]
 gi|149053924|gb|EDM05741.1| distal-less homeobox 3 (predicted) [Rattus norvegicus]
          Length = 287

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 175 IWFQNRRSKFKKL 187


>gi|432851989|ref|XP_004067140.1| PREDICTED: uncharacterized protein LOC101159569 isoform 2 [Oryzias
           latipes]
          Length = 342

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 39/75 (52%), Positives = 54/75 (72%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 161 RRPRTAFTSQQLLELENQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRK 220

Query: 102 AEIEKIKMSAIAAAR 116
           A+ +    + + + R
Sbjct: 221 AKEQAAASNQVESER 235


>gi|29372469|emb|CAD83854.1| homeobox protein AmphiNK1b [Branchiostoma floridae]
          Length = 332

 Score = 79.3 bits (194), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 56/89 (62%), Gaps = 5/89 (5%)

Query: 14  ILSSPLLSDSNKGDPPKLNVNLRK----HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIA 69
           +L+S   SD N     K+    R      KP R+ RT FT +QL++LE KF++ +YLS+ 
Sbjct: 170 MLASKKSSDDNNNSKSKVKSRARDPSRLGKP-RRARTAFTYEQLVALENKFKQTRYLSVC 228

Query: 70  ERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 229 ERLNLALSLSLTETQVKIWFQNRRTKWKK 257


>gi|324511719|gb|ADY44872.1| Homeobox protein DLX-1 [Ascaris suum]
          Length = 318

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 49/63 (77%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +T+ QL  L+K+F + QYL++ ERAE +S L LT+TQVKIWFQNRR+K 
Sbjct: 132 KGKRVRKPRTIYTSMQLQELQKRFHKTQYLALPERAELASRLGLTQTQVKIWFQNRRSKH 191

Query: 97  KRL 99
           K++
Sbjct: 192 KKM 194


>gi|3445426|emb|CAA07497.1| homeobox protein [Cupiennius salei]
          Length = 173

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 49/78 (62%), Gaps = 1/78 (1%)

Query: 26  GDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQV 85
           G P   N N+     N   RT FTT+QL  LEK+F   +YL+ A R E +++L L ETQV
Sbjct: 52  GGPTASNTNVSNGGSNGSGRTNFTTKQLTELEKEFHYNKYLTRARRIEIATALQLNETQV 111

Query: 86  KIWFQNRRAK-AKRLQEA 102
           KIWFQNRR K  KR++E 
Sbjct: 112 KIWFQNRRMKQKKRMKEG 129


>gi|123307|sp|P15142.1|HM7X_CHICK RecName: Full=Homeobox protein CHOX-7
 gi|930023|emb|CAA34285.1| CHox7 protein [Gallus gallus]
          Length = 124

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 24  SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 83

Query: 101 EAEI 104
              +
Sbjct: 84  AGNV 87


>gi|395519774|ref|XP_003764017.1| PREDICTED: homeobox protein DLX-2 [Sarcophilus harrisii]
          Length = 333

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 58/74 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 134 PEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 193

Query: 89  FQNRRAKAKRLQEA 102
           FQNRR+K K++ ++
Sbjct: 194 FQNRRSKFKKMWKS 207


>gi|345486434|ref|XP_003425474.1| PREDICTED: homeobox protein rough-like [Nasonia vitripennis]
          Length = 281

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 43/99 (43%), Positives = 63/99 (63%), Gaps = 3/99 (3%)

Query: 36  RKHKPNR--KPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
           RK K  R  + RT F+++Q L LE ++R+ +Y+S A R E ++ L LTETQ+KIWFQNRR
Sbjct: 140 RKKKEGRPRRQRTTFSSEQTLRLESEYRQGEYISRARRFELANGLKLTETQIKIWFQNRR 199

Query: 94  AKAKRLQEAEIEK-IKMSAIAAARPHPLYGPGPSPHLHQ 131
           AK KRL++A+ ++ ++  AIA      +  PG      Q
Sbjct: 200 AKDKRLEKAQQDQHLRNIAIAGGLMMGVQLPGALCRFCQ 238


>gi|301611398|ref|XP_002935225.1| PREDICTED: motor neuron and pancreas homeobox protein 1-like
           [Xenopus (Silurana) tropicalis]
          Length = 339

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 52/67 (77%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 178 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 237

Query: 102 AEIEKIK 108
           A+ + ++
Sbjct: 238 AKEQAVQ 244


>gi|194763969|ref|XP_001964104.1| GF21379 [Drosophila ananassae]
 gi|190619029|gb|EDV34553.1| GF21379 [Drosophila ananassae]
          Length = 313

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           KL ++    KP R+ RT FT  QL  LE+KFR ++YLS+A+R++ + +L+L+ETQVK W+
Sbjct: 167 KLQLSKSGRKPRRR-RTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWY 225

Query: 90  QNRRAKAKRLQEAEIEKIKMSA 111
           QNRR K KR  +  +E+++  A
Sbjct: 226 QNRRTKWKRQNQLRLEQLRHQA 247


>gi|402899589|ref|XP_003912773.1| PREDICTED: homeobox protein DLX-3, partial [Papio anubis]
          Length = 207

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 56/75 (74%), Gaps = 2/75 (2%)

Query: 27  DPPKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQ 84
           + P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQ
Sbjct: 113 EEPEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQ 172

Query: 85  VKIWFQNRRAKAKRL 99
           VKIWFQNRR+K K+L
Sbjct: 173 VKIWFQNRRSKFKKL 187


>gi|354483644|ref|XP_003504002.1| PREDICTED: homeobox protein DLX-3-like [Cricetulus griseus]
 gi|344245680|gb|EGW01784.1| Homeobox protein DLX-3 [Cricetulus griseus]
          Length = 287

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 175 IWFQNRRSKFKKL 187


>gi|307177145|gb|EFN66378.1| Brain-specific homeobox protein [Camponotus floridanus]
          Length = 318

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/89 (46%), Positives = 53/89 (59%), Gaps = 3/89 (3%)

Query: 13  LILSSPLLSDSNKGD---PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIA 69
             L+SPL   +  G    P    +   KH   RK RT F+ QQL  LE +F  ++YLS  
Sbjct: 82  FFLASPLFGSTGMGVGMVPGVGELAALKHCRRRKARTVFSDQQLAGLEARFEVQRYLSTP 141

Query: 70  ERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           ER E +++LHL+ETQVK WFQNRR K K+
Sbjct: 142 ERVELAAALHLSETQVKTWFQNRRMKHKK 170


>gi|440912791|gb|ELR62326.1| Homeobox protein DLX-2, partial [Bos grunniens mutus]
          Length = 162

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 65/88 (73%), Gaps = 1/88 (1%)

Query: 16  SSPLLSDSNKGD-PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           SSP  ++  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE 
Sbjct: 45  SSPANNEPEKEDLEPEIRIVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAEL 104

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRLQEA 102
           ++SL LT+TQVKIWFQNRR+K K++ ++
Sbjct: 105 AASLGLTQTQVKIWFQNRRSKFKKMWKS 132


>gi|443427952|pdb|2M34|A Chain A, Nmr Structure Of The Homeodomain Transcription Factor Gbx1
           From Homo Sapiens
          Length = 71

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/65 (53%), Positives = 50/65 (76%)

Query: 40  PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
            +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR+
Sbjct: 6   KSRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRI 65

Query: 100 QEAEI 104
           +   +
Sbjct: 66  KAGNV 70


>gi|157135796|ref|XP_001663597.1| nk homeobox protein [Aedes aegypti]
 gi|108870112|gb|EAT34337.1| AAEL013405-PA [Aedes aegypti]
          Length = 184

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 71  RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 127


>gi|99030988|gb|ABF61779.1| gastrulation brain homeodomain [Nematostella vectensis]
          Length = 228

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 49/59 (83%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+Y+S+ ER+  +++L+LTE QVKIWFQNRRAK KR++
Sbjct: 132 RRKRTAFTSKQLLQLEREFHNKKYVSLEERSVIATNLNLTEVQVKIWFQNRRAKWKRVR 190


>gi|6754218|ref|NP_034575.1| homeobox protein HMX1 [Mus musculus]
 gi|81861331|sp|O70218.1|HMX1_MOUSE RecName: Full=Homeobox protein HMX1; AltName: Full=Homeobox protein
           H6
 gi|2978515|gb|AAC24193.1| homeobox containing nuclear transcriptional factor Hmx1 [Mus
           musculus]
 gi|3253161|gb|AAC24324.1| homeobox containing nuclear transcriptional factor Hmx1 [Mus
           musculus]
 gi|148705536|gb|EDL37483.1| H6 homeobox 1 [Mus musculus]
 gi|182888407|gb|AAI60207.1| H6 homeo box 1 [synthetic construct]
          Length = 332

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 47/69 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS AERA  ++SL LTETQVKIWFQNRR K KR   
Sbjct: 192 KKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLA 251

Query: 102 AEIEKIKMS 110
           AE+E   +S
Sbjct: 252 AELEAASLS 260


>gi|157123956|ref|XP_001653992.1| homeobox protein distal-less dlx [Aedes aegypti]
 gi|108882894|gb|EAT47119.1| AAEL001780-PA [Aedes aegypti]
          Length = 221

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 41/80 (51%), Positives = 58/80 (72%), Gaps = 1/80 (1%)

Query: 23  SNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTE 82
           S+K +   L VN  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+
Sbjct: 18  SDKIEDTGLRVN-GKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQ 76

Query: 83  TQVKIWFQNRRAKAKRLQEA 102
           TQVKIWFQNRR+K K++ +A
Sbjct: 77  TQVKIWFQNRRSKYKKMMKA 96


>gi|157133818|ref|XP_001656292.1| hypothetical protein AaeL_AAEL012881 [Aedes aegypti]
 gi|108870695|gb|EAT34920.1| AAEL012881-PA [Aedes aegypti]
          Length = 223

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 37/76 (48%), Positives = 54/76 (71%), Gaps = 3/76 (3%)

Query: 39  KPNRKPR---TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
           K  RKPR   T FT  QL  LE+KFR ++YLS+A+R++ + +L+L+ETQVK W+QNRR K
Sbjct: 93  KAGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVADALNLSETQVKTWYQNRRTK 152

Query: 96  AKRLQEAEIEKIKMSA 111
            KR  +  +E+++  A
Sbjct: 153 WKRQNQLRLEQLRHQA 168


>gi|397490873|ref|XP_003816410.1| PREDICTED: uncharacterized protein LOC100994505, partial [Pan
           paniscus]
          Length = 667

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 61  RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 120

Query: 102 AE 103
           A+
Sbjct: 121 AK 122


>gi|198470721|ref|XP_002133557.1| GA22961 [Drosophila pseudoobscura pseudoobscura]
 gi|198145589|gb|EDY72185.1| GA22961 [Drosophila pseudoobscura pseudoobscura]
          Length = 283

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 56/80 (70%), Gaps = 3/80 (3%)

Query: 35  LRKHKPNRKPR---TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
           L+  K  RKPR   T FT  QL  LE+KFR ++YLS+A+R++ + +L+L+ETQVK W+QN
Sbjct: 138 LQMSKSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQN 197

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RR K KR  +  +E+++  A
Sbjct: 198 RRTKWKRQNQLRLEQLRHQA 217


>gi|432903181|ref|XP_004077123.1| PREDICTED: homeobox protein HMX2 [Oryzias latipes]
          Length = 275

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
           LSD  + D      N  K    +K RT F+  Q+  LE  F  K+YLS +ERA  +SSL 
Sbjct: 134 LSDDRQTDGADKQSNSAK----KKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQ 189

Query: 80  LTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAA 114
           LTETQVK WFQNRR K KR   AE+E   M+  +A
Sbjct: 190 LTETQVKTWFQNRRNKWKRQLSAELEAANMAHASA 224


>gi|345483254|ref|XP_001602252.2| PREDICTED: hypothetical protein LOC100118230 [Nasonia vitripennis]
          Length = 412

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 47/59 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+YLS+ ER+  + +L L+E QVKIWFQNRRAK KR++
Sbjct: 235 RRRRTAFTSEQLLELEREFHAKKYLSLTERSHIAHALKLSEVQVKIWFQNRRAKWKRVK 293


>gi|347963914|ref|XP_310608.5| AGAP000484-PA [Anopheles gambiae str. PEST]
 gi|333466976|gb|EAA06450.5| AGAP000484-PA [Anopheles gambiae str. PEST]
          Length = 688

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 574 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 630


>gi|270010106|gb|EFA06554.1| hypothetical protein TcasGA2_TC009463 [Tribolium castaneum]
          Length = 328

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 36/83 (43%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           ++PRT FT  Q+ SLE +F   +YLS+A+R + S +L LTETQ+KIWFQNRR K KR   
Sbjct: 176 KRPRTAFTASQIKSLEAEFERNKYLSVAKRCQLSKTLKLTETQIKIWFQNRRTKWKRKYT 235

Query: 102 AEIEKIK---MSAIAAARPHPLY 121
            ++E +     +++    P P++
Sbjct: 236 NDVELLAQQYYTSMGILTPRPIF 258


>gi|11994951|dbj|BAB20016.1| transcription factor Gbx-1 [Gallus gallus]
          Length = 243

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/64 (54%), Positives = 50/64 (78%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           +R+ RT FT++QLL LEK+F  K+YLS+ ER++ + +L L+E QVKIWFQNRRAK KR++
Sbjct: 141 SRRRRTAFTSEQLLELEKEFHCKKYLSLTERSQIAHALKLSEVQVKIWFQNRRAKWKRIK 200

Query: 101 EAEI 104
              +
Sbjct: 201 AGNV 204


>gi|7248802|gb|AAF43675.1|AF223363_1 homeodomain protein Nkx-1.2T5.1 [Mus musculus]
          Length = 179

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 122 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 178


>gi|195110715|ref|XP_001999925.1| GI24800 [Drosophila mojavensis]
 gi|193916519|gb|EDW15386.1| GI24800 [Drosophila mojavensis]
          Length = 754

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 641 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 697


>gi|149047394|gb|EDM00064.1| H6 homeo box 1 (predicted), isoform CRA_b [Rattus norvegicus]
          Length = 333

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/69 (56%), Positives = 47/69 (68%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS AERA  ++SL LTETQVKIWFQNRR K KR   
Sbjct: 193 KKTRTVFSRSQVFQLESTFDLKRYLSSAERAGLAASLQLTETQVKIWFQNRRNKWKRQLA 252

Query: 102 AEIEKIKMS 110
           AE+E   +S
Sbjct: 253 AELEAASLS 261


>gi|57770410|ref|NP_001009887.1| motor neuron and pancreas homeobox 2b [Danio rerio]
 gi|41400304|gb|AAS07020.1| homeodomain protein Mnr2b [Danio rerio]
          Length = 320

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 155 RRPRTAFTSQQLLELENQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRK 214

Query: 102 AE 103
           A+
Sbjct: 215 AK 216


>gi|260826734|ref|XP_002608320.1| nk homeobox 1b [Branchiostoma floridae]
 gi|229293671|gb|EEN64330.1| nk homeobox 1b [Branchiostoma floridae]
          Length = 344

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 43/89 (48%), Positives = 56/89 (62%), Gaps = 5/89 (5%)

Query: 14  ILSSPLLSDSNKGDPPKLNVNLRK----HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIA 69
           +L+S   SD N     K+    R      KP R+ RT FT +QL++LE KF++ +YLS+ 
Sbjct: 182 MLASKKSSDDNNNSKSKVKSRARDPSRLGKP-RRVRTAFTYEQLVALENKFKQTRYLSVC 240

Query: 70  ERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 241 ERLNLALSLSLTETQVKIWFQNRRTKWKK 269


>gi|195352674|ref|XP_002042836.1| GM11573 [Drosophila sechellia]
 gi|194126883|gb|EDW48926.1| GM11573 [Drosophila sechellia]
          Length = 272

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           KL ++    KP R+ RT FT  QL  LE+KFR ++YLS+A+R++ + +L+L+ETQVK W+
Sbjct: 127 KLQLSKSGRKPRRR-RTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWY 185

Query: 90  QNRRAKAKRLQEAEIEKIKMSA 111
           QNRR K KR  +  +E+++  A
Sbjct: 186 QNRRTKWKRQNQLRLEQLRHQA 207


>gi|410897249|ref|XP_003962111.1| PREDICTED: uncharacterized protein LOC101063334 [Takifugu rubripes]
          Length = 318

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/62 (59%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 170 RRPRTAFTSQQLLELENQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRK 229

Query: 102 AE 103
           ++
Sbjct: 230 SK 231


>gi|195055979|ref|XP_001994890.1| GH13609 [Drosophila grimshawi]
 gi|193892653|gb|EDV91519.1| GH13609 [Drosophila grimshawi]
          Length = 719

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 607 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 663


>gi|190339141|gb|AAI63315.1| Hlxb9lb protein [Danio rerio]
          Length = 328

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 163 RRPRTAFTSQQLLELENQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRK 222

Query: 102 AE 103
           A+
Sbjct: 223 AK 224


>gi|161611956|gb|AAI55810.1| Barhl1.2 protein [Danio rerio]
          Length = 299

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 55/150 (36%), Positives = 74/150 (49%), Gaps = 28/150 (18%)

Query: 34  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
           N R  KP RK RT FT  QL  LE+ F  ++YLS+ +R E ++SL+LT+TQVK W+QNRR
Sbjct: 149 NSRLKKP-RKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRR 207

Query: 94  AKAKRLQEAEIEKI----KMSAIAAARPHPLYGP-------GPSPHLHQYFQHAS----- 137
            K KR     +E +      SA+    P P + P        P P L+ Y   ++     
Sbjct: 208 TKWKRQTAVGLELLAEAGNYSALQRMFPSPYFYPQSLVSNLDPGPGLYLYRGPSAPPPPV 267

Query: 138 -----PEALLH------HPHPFSALLGRHP 156
                P  LLH       P   S ++ RHP
Sbjct: 268 QRPLVPRILLHGLQGGGDPASLSGVIPRHP 297


>gi|89257348|ref|NP_005506.3| motor neuron and pancreas homeobox protein 1 isoform 1 [Homo
           sapiens]
 gi|259016336|sp|P50219.3|MNX1_HUMAN RecName: Full=Motor neuron and pancreas homeobox protein 1;
           AltName: Full=Homeobox protein HB9
 gi|119624969|gb|EAX04564.1| homeobox HB9 [Homo sapiens]
 gi|182888351|gb|AAI60126.1| Motor neuron and pancreas homeobox 1 [synthetic construct]
          Length = 401

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 242 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 301

Query: 102 AE 103
           A+
Sbjct: 302 AK 303


>gi|195498556|ref|XP_002096574.1| GE24972 [Drosophila yakuba]
 gi|194182675|gb|EDW96286.1| GE24972 [Drosophila yakuba]
          Length = 667

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 554 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 610


>gi|307186810|gb|EFN72233.1| Homeobox protein rough [Camponotus floridanus]
          Length = 147

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 33/65 (50%), Positives = 50/65 (76%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+ RT F+ +Q L LE ++R  +Y+S   R E ++SL LTETQ+KIWFQNRRAK KR+++
Sbjct: 3   RRQRTTFSGEQTLRLEVEYRRGEYISRGRRFELAASLRLTETQIKIWFQNRRAKDKRIEK 62

Query: 102 AEIEK 106
           A++++
Sbjct: 63  AQLDQ 67


>gi|195048680|ref|XP_001992575.1| GH24130 [Drosophila grimshawi]
 gi|193893416|gb|EDV92282.1| GH24130 [Drosophila grimshawi]
          Length = 281

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           KL ++    KP R+ RT FT  QL  LE+KFR ++YLS+A+R++ + +L+L+ETQVK W+
Sbjct: 136 KLQLSKSGRKP-RRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWY 194

Query: 90  QNRRAKAKRLQEAEIEKIKMSA 111
           QNRR K KR  +  +E+++  A
Sbjct: 195 QNRRTKWKRQNQLRLEQLRHQA 216


>gi|195174927|ref|XP_002028217.1| GL13135 [Drosophila persimilis]
 gi|194116716|gb|EDW38759.1| GL13135 [Drosophila persimilis]
          Length = 282

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/80 (47%), Positives = 56/80 (70%), Gaps = 3/80 (3%)

Query: 35  LRKHKPNRKPR---TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91
           L+  K  RKPR   T FT  QL  LE+KFR ++YLS+A+R++ + +L+L+ETQVK W+QN
Sbjct: 137 LQMSKSGRKPRRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWYQN 196

Query: 92  RRAKAKRLQEAEIEKIKMSA 111
           RR K KR  +  +E+++  A
Sbjct: 197 RRTKWKRQNQLRLEQLRHQA 216


>gi|46484683|gb|AAS98251.1| homeobox protein DLX3 [Eleutherodactylus coqui]
          Length = 217

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 56/75 (74%), Gaps = 2/75 (2%)

Query: 27  DPPKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQ 84
           + P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQ
Sbjct: 91  EEPETEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQ 150

Query: 85  VKIWFQNRRAKAKRL 99
           VKIWFQNRR+K K+L
Sbjct: 151 VKIWFQNRRSKFKKL 165


>gi|5281128|gb|AAD41467.1| homeotic protein HB9 [Homo sapiens]
          Length = 355

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 244 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 303

Query: 102 AE 103
           A+
Sbjct: 304 AK 305


>gi|332870283|ref|XP_001150658.2| PREDICTED: motor neuron and pancreas homeobox protein 1 [Pan
           troglodytes]
          Length = 398

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 239 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 298

Query: 102 AE 103
           A+
Sbjct: 299 AK 300


>gi|1708253|sp|P53772.1|DLLH_BRAFL RecName: Full=Homeobox protein DLL homolog
 gi|1197454|gb|AAB36860.1| homeodomain protein [Branchiostoma floridae]
          Length = 321

 Score = 79.0 bits (193), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 1/73 (1%)

Query: 27  DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           DP    +N  K K  RKPRT +T+ QL  L ++F+  QYL++ ERAE ++ L LT+TQVK
Sbjct: 103 DPTDQRIN-GKGKKMRKPRTIYTSFQLQQLNRRFQRTQYLALPERAELAAQLGLTQTQVK 161

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 162 IWFQNRRSKYKKL 174


>gi|449492144|ref|XP_002188131.2| PREDICTED: motor neuron and pancreas homeobox protein 1
           [Taeniopygia guttata]
          Length = 215

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 50/108 (46%), Positives = 67/108 (62%), Gaps = 7/108 (6%)

Query: 2   VDLPQLFLNEILILSSPLLSDSNKG----DPPKLNVNLRKH--KPNRKPRTPFTTQQLLS 55
           VD P+L    +L L  P+L  S +G      P  N   + +     R+PRT FT+QQLL 
Sbjct: 17  VDSPKLRYC-LLFLLDPVLRSSPEGMILPKMPDFNSQAQSNLLGKCRRPRTAFTSQQLLE 75

Query: 56  LEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAE 103
           LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++A+
Sbjct: 76  LEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKKAK 123


>gi|195391550|ref|XP_002054423.1| GJ24446 [Drosophila virilis]
 gi|194152509|gb|EDW67943.1| GJ24446 [Drosophila virilis]
          Length = 699

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 586 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 642


>gi|56118498|ref|NP_571397.2| homeobox protein Dlx3b [Danio rerio]
 gi|50417934|gb|AAH78386.1| Distal-less homeobox gene 3b [Danio rerio]
 gi|182888624|gb|AAI63992.1| Dlx3b protein [Danio rerio]
          Length = 269

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 111 PETEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 170

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 171 IWFQNRRSKFKKL 183


>gi|395540678|ref|XP_003772279.1| PREDICTED: homeobox protein DLX-5-like [Sarcophilus harrisii]
          Length = 334

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/143 (35%), Positives = 83/143 (58%), Gaps = 8/143 (5%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 168 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 227

Query: 89  FQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHHPHPF 148
           FQN+R+K K++ +   E     + +++ P     P            A+  +L HHPH  
Sbjct: 228 FQNKRSKIKKIMK-NGEMPPEHSPSSSDPMACNSPQSPAVWEPAGSGAAARSLGHHPH-- 284

Query: 149 SALLGRHPAMAHFMPAAPMPQNS 171
                 HPA ++  PA+   +NS
Sbjct: 285 -----GHPAASNPSPASNYLENS 302


>gi|1346299|sp|Q01702.1|DLX3B_DANRE RecName: Full=Homeobox protein Dlx3b; Short=DLX-3; AltName:
           Full=Distal-less homeobox protein 3b
 gi|62512|emb|CAA46193.1| dlx-3 [Danio rerio]
          Length = 269

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 111 PETEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 170

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 171 IWFQNRRSKFKKL 183


>gi|156388087|ref|XP_001634533.1| predicted protein [Nematostella vectensis]
 gi|156221617|gb|EDO42470.1| predicted protein [Nematostella vectensis]
          Length = 98

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 49/59 (83%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+Y+S+ ER+  +++L+LTE QVKIWFQNRRAK KR++
Sbjct: 6   RRKRTAFTSKQLLQLEREFHNKKYVSLEERSVIATNLNLTEVQVKIWFQNRRAKWKRVR 64


>gi|311275091|ref|XP_003134570.1| PREDICTED: motor neuron and pancreas homeobox protein 1-like [Sus
           scrofa]
          Length = 404

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 245 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 304

Query: 102 AE 103
           A+
Sbjct: 305 AK 306


>gi|195569139|ref|XP_002102568.1| GD19974 [Drosophila simulans]
 gi|194198495|gb|EDX12071.1| GD19974 [Drosophila simulans]
          Length = 658

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 545 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 601


>gi|260835896|ref|XP_002612943.1| homeobox protein DLL-like protein, distalless [Branchiostoma
           floridae]
 gi|229298325|gb|EEN68952.1| homeobox protein DLL-like protein, distalless [Branchiostoma
           floridae]
          Length = 320

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/73 (53%), Positives = 52/73 (71%), Gaps = 1/73 (1%)

Query: 27  DPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           DP    +N  K K  RKPRT +T+ QL  L ++F+  QYL++ ERAE ++ L LT+TQVK
Sbjct: 103 DPTDQRIN-GKGKKMRKPRTIYTSFQLQQLNRRFQRTQYLALPERAELAAQLGLTQTQVK 161

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 162 IWFQNRRSKYKKL 174


>gi|89272453|emb|CAJ82874.1| distal-less homeo box 3 [Xenopus (Silurana) tropicalis]
          Length = 277

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 56/75 (74%), Gaps = 2/75 (2%)

Query: 27  DPPKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQ 84
           + P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQ
Sbjct: 115 EEPETEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQ 174

Query: 85  VKIWFQNRRAKAKRL 99
           VKIWFQNRR+K K+L
Sbjct: 175 VKIWFQNRRSKFKKL 189


>gi|126341096|ref|XP_001364877.1| PREDICTED: motor neuron and pancreas homeobox protein 1-like
           [Monodelphis domestica]
          Length = 388

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 231 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 290

Query: 102 AE 103
           A+
Sbjct: 291 AK 292


>gi|71896233|ref|NP_001025566.1| distal-less homeobox 3 [Xenopus (Silurana) tropicalis]
 gi|60688066|gb|AAH90605.1| distal-less homeobox 3 [Xenopus (Silurana) tropicalis]
          Length = 276

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/75 (49%), Positives = 56/75 (74%), Gaps = 2/75 (2%)

Query: 27  DPPKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQ 84
           + P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQ
Sbjct: 115 EEPETEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQ 174

Query: 85  VKIWFQNRRAKAKRL 99
           VKIWFQNRR+K K+L
Sbjct: 175 VKIWFQNRRSKFKKL 189


>gi|1082461|pir||A53662 homeotic protein HB9 - human
          Length = 403

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 244 RRPRTAFTSQQLLELEHQFKFNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 303

Query: 102 AE 103
           A+
Sbjct: 304 AK 305


>gi|432928367|ref|XP_004081164.1| PREDICTED: motor neuron and pancreas homeobox protein 1-like
           [Oryzias latipes]
          Length = 317

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 53/75 (70%), Gaps = 6/75 (8%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 180 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 239

Query: 102 A------EIEKIKMS 110
           A      E EK K S
Sbjct: 240 AKEQAAQEAEKQKGS 254


>gi|259013329|ref|NP_001158363.1| ventral anterior homeobox [Saccoglossus kowalevskii]
 gi|32307767|gb|AAP79280.1| ventral anterior homeobox [Saccoglossus kowalevskii]
          Length = 240

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 57/86 (66%), Gaps = 4/86 (4%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           ++ RT F+ QQL  LE++F+  QY+   +RAE ++ LHL+ETQVK+WFQNRR K KR + 
Sbjct: 148 KRARTSFSPQQLYRLEREFQRNQYMVGRDRAELATCLHLSETQVKVWFQNRRTKFKREKC 207

Query: 102 AEIEKIKMSAIAAARPHPL----YGP 123
            E+E  + +A + A  + L    YGP
Sbjct: 208 KEVESQQRNAESMATRNILEILQYGP 233


>gi|395539793|ref|XP_003771850.1| PREDICTED: motor neuron and pancreas homeobox protein 1
           [Sarcophilus harrisii]
          Length = 339

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 183 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 242

Query: 102 AE 103
           A+
Sbjct: 243 AK 244


>gi|348503438|ref|XP_003439271.1| PREDICTED: motor neuron and pancreas homeobox protein 1-like
           [Oreochromis niloticus]
          Length = 315

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 53/75 (70%), Gaps = 6/75 (8%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 178 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 237

Query: 102 A------EIEKIKMS 110
           A      E EK K S
Sbjct: 238 AKEQAAQEAEKQKGS 252


>gi|332259528|ref|XP_003278840.1| PREDICTED: homeobox protein DLX-3 [Nomascus leucogenys]
          Length = 395

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 223 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 282

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 283 IWFQNRRSKFKKL 295


>gi|322366538|gb|ADW95343.1| Dlx [Paracentrotus lividus]
          Length = 419

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/79 (49%), Positives = 56/79 (70%), Gaps = 3/79 (3%)

Query: 21  SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
           +DS      KL++  +K    RKPRT +T+ QL  L ++F + QYL++ ERAE ++SL L
Sbjct: 125 TDSETSIETKLSLRGKK---LRKPRTIYTSLQLQQLNQRFHQTQYLALPERAELAASLGL 181

Query: 81  TETQVKIWFQNRRAKAKRL 99
           T+TQVKIWFQNRR+K K++
Sbjct: 182 TQTQVKIWFQNRRSKYKKI 200


>gi|282165680|ref|NP_001163947.1| NK1 homeobox 2 [Rattus norvegicus]
 gi|149061299|gb|EDM11722.1| rCG47496, isoform CRA_a [Rattus norvegicus]
          Length = 305

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 157 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 213


>gi|50952828|gb|AAT90340.1| homeodomain protein 9, partial [Danio rerio]
          Length = 294

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 178 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 237

Query: 102 AE 103
           A+
Sbjct: 238 AK 239


>gi|195344400|ref|XP_002038775.1| GM11004 [Drosophila sechellia]
 gi|194133796|gb|EDW55312.1| GM11004 [Drosophila sechellia]
          Length = 660

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 547 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 603


>gi|194895837|ref|XP_001978355.1| GG17730 [Drosophila erecta]
 gi|190650004|gb|EDV47282.1| GG17730 [Drosophila erecta]
          Length = 272

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           KL ++    KP R+ RT FT  QL  LE+KFR ++YLS+A+R++ + +L+L+ETQVK W+
Sbjct: 128 KLQLSKSGRKPRRR-RTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWY 186

Query: 90  QNRRAKAKRLQEAEIEKIKMSA 111
           QNRR K KR  +  +E+++  A
Sbjct: 187 QNRRTKWKRQNQLRLEQLRHQA 208


>gi|157132666|ref|XP_001662601.1| hypothetical protein AaeL_AAEL012474 [Aedes aegypti]
 gi|108871130|gb|EAT35355.1| AAEL012474-PA [Aedes aegypti]
          Length = 219

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/61 (60%), Positives = 48/61 (78%)

Query: 38  HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97
           +  NR+PRT FT+QQLL LEK+F+  +YLS  +R E +++L L+ETQVKIWFQNRR K K
Sbjct: 60  YGKNRRPRTAFTSQQLLELEKQFKVSKYLSRPKRYEVANNLLLSETQVKIWFQNRRMKWK 119

Query: 98  R 98
           R
Sbjct: 120 R 120


>gi|343168815|gb|AEL96784.1| RT11964p1 [Drosophila melanogaster]
          Length = 659

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 546 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 602


>gi|57770400|ref|NP_001009885.1| motor neuron and pancreas homeobox protein 1 [Danio rerio]
 gi|41400300|gb|AAS07018.1| homeodomain protein Hb9 [Danio rerio]
 gi|62205408|gb|AAH93243.1| Motor neuron and pancreas homeobox 1 [Danio rerio]
          Length = 311

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 178 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 237

Query: 102 AE 103
           A+
Sbjct: 238 AK 239


>gi|383857811|ref|XP_003704397.1| PREDICTED: uncharacterized protein LOC100875048 [Megachile
           rotundata]
          Length = 330

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           ++PRT FT  Q+ SLE +F   +YLS+A+R + S SL LTETQ+KIWFQNRR K KR   
Sbjct: 172 KRPRTAFTAAQIKSLEAEFERNKYLSVAKRLQLSKSLKLTETQIKIWFQNRRTKWKRKYT 231

Query: 102 AEIEKIK---MSAIAAARPHPLY 121
            ++E +     S++    P P++
Sbjct: 232 NDVELLAQQYYSSLGIPAPRPIF 254


>gi|340375568|ref|XP_003386306.1| PREDICTED: hypothetical protein LOC100632286 [Amphimedon
           queenslandica]
 gi|167859577|gb|ACA04743.1| Bsh-like [Amphimedon queenslandica]
          Length = 403

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/67 (56%), Positives = 47/67 (70%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RK RT FT +QL  LE KF EK+YLS+ +R E ++ L L+ETQVK WFQNRR K 
Sbjct: 266 KLKRKRKLRTVFTEKQLEGLETKFSEKKYLSVPDRMELANRLELSETQVKTWFQNRRMKC 325

Query: 97  KRLQEAE 103
           K+ Q+ E
Sbjct: 326 KKQQQVE 332


>gi|2065054|emb|CAA72693.1| Nkx2-8 [Gallus gallus]
          Length = 193

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 4/86 (4%)

Query: 13  LILSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERA 72
            +LS PL +D  + DP     +  K    RKPR  F+  Q+L LE++F++++YLS  ER 
Sbjct: 40  CLLSQPLQADQQQTDP----CHHPKQPQRRKPRVLFSQTQVLELERRFKQQKYLSALERE 95

Query: 73  EFSSSLHLTETQVKIWFQNRRAKAKR 98
             ++ L LT TQVKIWFQNRR K KR
Sbjct: 96  HLANVLQLTSTQVKIWFQNRRYKCKR 121


>gi|47223449|emb|CAG04310.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 305

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 225 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 284

Query: 102 AE 103
           A+
Sbjct: 285 AK 286


>gi|410953314|ref|XP_003983317.1| PREDICTED: uncharacterized protein LOC101089429 [Felis catus]
          Length = 403

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 93  RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 152

Query: 102 AE 103
           A+
Sbjct: 153 AK 154


>gi|306432013|emb|CBJ55493.1| dlx5a protein [Haplochromis burtoni]
          Length = 285

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 55/71 (77%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F+  QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 126 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQNTQYLALPERAELAASLGLTQTQVKIW 185

Query: 89  FQNRRAKAKRL 99
           FQNRR+K K++
Sbjct: 186 FQNRRSKMKKI 196


>gi|404312671|ref|NP_001258203.1| uncharacterized protein LOC682076 [Rattus norvegicus]
 gi|149031437|gb|EDL86427.1| rCG56739 [Rattus norvegicus]
          Length = 403

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 242 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 301

Query: 102 AE 103
           A+
Sbjct: 302 AK 303


>gi|260826726|ref|XP_002608316.1| BarH-like homeobox protein [Branchiostoma floridae]
 gi|229293667|gb|EEN64326.1| BarH-like homeobox protein [Branchiostoma floridae]
          Length = 337

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/149 (34%), Positives = 78/149 (52%), Gaps = 24/149 (16%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR-L 99
           N+K RT F++ Q+  LE +F  ++YLS ++R E + +L LT+ QVK WFQNRR K KR +
Sbjct: 142 NKKLRTAFSSHQVHELETRFSTQKYLSASDREELAHALDLTDAQVKTWFQNRRMKWKRQV 201

Query: 100 QEAEIEKIKMSAIAAARPHPLYGP-------GPSPHLHQYFQHASPEALLHHP------- 145
           Q+AE E  +        PH  + P       G +P++  +  H+ P A   HP       
Sbjct: 202 QDAESEARRFGMFGPHHPHLAFFPSLGVTLAGLTPNMLGHSGHSLPPASAVHPTGPVHHY 261

Query: 146 ----HPFSALLGRHPAMAHFMPAAPMPQN 170
               HP++      P  +H  P+AP+PQ 
Sbjct: 262 GQGYHPYTV-----PVPSHHPPSAPVPQT 285


>gi|156405623|ref|XP_001640831.1| predicted protein [Nematostella vectensis]
 gi|156227967|gb|EDO48768.1| predicted protein [Nematostella vectensis]
          Length = 275

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 46/119 (38%), Positives = 61/119 (51%), Gaps = 19/119 (15%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+ RT FT +QL++LE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+   
Sbjct: 158 RRARTAFTYEQLVALENKFKSTRYLSVCERLNLALSLGLTETQVKIWFQNRRTKWKK--- 214

Query: 102 AEIEKIKMSAIAAARPHPLYGPGP-------------SPHLHQYFQHASPEALLHHPHP 147
              +   M   A  RP+  +GP                P    Y+  +S    +  PHP
Sbjct: 215 ---QNPGMDVTAPTRPNIPHGPASLAGYPPGFLCGAQCPSQMHYYTSSSSLPYIIRPHP 270


>gi|348539628|ref|XP_003457291.1| PREDICTED: homeobox protein Dlx5a-like [Oreochromis niloticus]
          Length = 285

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 55/71 (77%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F+  QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 126 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQNTQYLALPERAELAASLGLTQTQVKIW 185

Query: 89  FQNRRAKAKRL 99
           FQNRR+K K++
Sbjct: 186 FQNRRSKMKKI 196


>gi|328720395|ref|XP_003247017.1| PREDICTED: homeobox protein slou-like [Acyrthosiphon pisum]
          Length = 463

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL++LE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 336 RRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 392


>gi|5733509|gb|AAD49613.1|AF153046_1 homeodomain protein HB9 [Mus musculus]
          Length = 404

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 242 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 301

Query: 102 AE 103
           A+
Sbjct: 302 AK 303


>gi|85838363|gb|ABC86113.1| ANTP homeobox protein [Trichoplax adhaerens]
          Length = 294

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 46/63 (73%)

Query: 36  RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
            K K NRKPRT FT+ QL  L  +FR   YL + ERA+ ++SL LT+TQVKIWFQNRR+K
Sbjct: 157 NKGKKNRKPRTIFTSAQLNELNNRFRLSHYLGLPERADLAASLGLTQTQVKIWFQNRRSK 216

Query: 96  AKR 98
            K+
Sbjct: 217 LKK 219


>gi|317420008|emb|CBN82044.1| Motor neuron and pancreas homeobox protein 1 [Dicentrarchus labrax]
          Length = 313

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 176 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 235

Query: 102 AE 103
           A+
Sbjct: 236 AK 237


>gi|341940962|sp|Q9QZW9.2|MNX1_MOUSE RecName: Full=Motor neuron and pancreas homeobox protein 1;
           AltName: Full=Homeobox protein HB9
          Length = 404

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 242 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 301

Query: 102 AE 103
           A+
Sbjct: 302 AK 303


>gi|307198461|gb|EFN79395.1| BarH-like 1 homeobox protein [Harpegnathos saltator]
          Length = 231

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           ++PRT FT  Q+ SLE +F   +YLS+A+R + S SL LTETQ+KIWFQNRR K KR   
Sbjct: 73  KRPRTAFTAAQIKSLEAEFERNKYLSVAKRLQLSKSLKLTETQIKIWFQNRRTKWKRKYT 132

Query: 102 AEIEKIK---MSAIAAARPHPLY 121
            ++E +     S++    P P++
Sbjct: 133 NDVELLAQQYYSSLGIPAPRPIF 155


>gi|226530953|ref|NP_064328.2| motor neuron and pancreas homeobox protein 1 [Mus musculus]
 gi|124376012|gb|AAI32284.1| Motor neuron and pancreas homeobox 1 [Mus musculus]
 gi|148705297|gb|EDL37244.1| homeobox gene HB9 [Mus musculus]
          Length = 404

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 242 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 301

Query: 102 AE 103
           A+
Sbjct: 302 AK 303


>gi|17136362|ref|NP_476657.1| slouch, isoform A [Drosophila melanogaster]
 gi|123395|sp|P22807.1|SLOU_DROME RecName: Full=Homeobox protein slou; AltName: Full=Homeobox protein
           NK-1; AltName: Full=Protein slouch; AltName: Full=S59/2
 gi|8531|emb|CAA39067.1| S59 protein [Drosophila melanogaster]
 gi|23171898|gb|AAF55901.3| slouch, isoform A [Drosophila melanogaster]
 gi|227464|prf||1704199A S59 homeobox gene
          Length = 659

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 546 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 602


>gi|328702962|ref|XP_003242054.1| PREDICTED: homeobox protein koza-like [Acyrthosiphon pisum]
          Length = 258

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 32/71 (45%), Positives = 53/71 (74%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+ RT FT  QL  LE+KFR ++YLS+A+R++ + +L+L+ETQVK W+QNRR K KR  +
Sbjct: 78  RRRRTAFTHAQLAYLERKFRSQKYLSVADRSDVAEALNLSETQVKTWYQNRRTKWKRQNQ 137

Query: 102 AEIEKIKMSAI 112
             +++++  ++
Sbjct: 138 LRLDQLRQQSV 148


>gi|269785071|ref|NP_001161491.1| vent 2 transcription factor [Saccoglossus kowalevskii]
 gi|268054397|gb|ACY92685.1| vent 2 transcription factor [Saccoglossus kowalevskii]
          Length = 242

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/75 (48%), Positives = 52/75 (69%), Gaps = 1/75 (1%)

Query: 37  KHKPNRK-PRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
           +H P RK  RT F+ +Q+  LEK+FR ++YLS  ER + S S+ L++TQVK WFQNRR K
Sbjct: 63  EHGPKRKRARTAFSNEQVYKLEKRFRAQKYLSATEREDVSRSIGLSDTQVKTWFQNRRMK 122

Query: 96  AKRLQEAEIEKIKMS 110
            KR ++ ++  + MS
Sbjct: 123 WKRERKDDVPDMSMS 137


>gi|269784915|ref|NP_001161609.1| Nkx1-like transcription factor [Saccoglossus kowalevskii]
 gi|268054215|gb|ACY92594.1| Nkx1-like transcription factor [Saccoglossus kowalevskii]
          Length = 339

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL++LE KF++ +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 206 RRARTAFTYEQLVALENKFKQTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 262


>gi|332030454|gb|EGI70142.1| Homeobox protein B-H1 [Acromyrmex echinatior]
          Length = 510

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 44/106 (41%), Positives = 58/106 (54%), Gaps = 3/106 (2%)

Query: 39  KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           K  RK RT FT  QL +LEK F  ++YLS+ +R E ++ L LT+TQVK W+QNRR K KR
Sbjct: 170 KKQRKARTAFTDHQLQTLEKSFERQKYLSVQDRMELAAKLQLTDTQVKTWYQNRRTKWKR 229

Query: 99  LQEAEIEKIKMSAIAAARPHPLYGPGPS---PHLHQYFQHASPEAL 141
                 E +  +  A A    LY        P   +Y+Q+ S  AL
Sbjct: 230 QTIVGFEIMAENNFAVAAFQHLYSGSTVPAHPAAGRYWQYPSAHAL 275


>gi|11992383|gb|AAG41497.1| homeodomain protein DlxC [Petromyzon marinus]
          Length = 342

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/70 (50%), Positives = 54/70 (77%), Gaps = 2/70 (2%)

Query: 32  NVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
            V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL +T+TQVKIWF
Sbjct: 130 GVRMVNGKPKKIRKPRTIYSSFQLAALQRRFQQTQYLALPERAELAASLGVTQTQVKIWF 189

Query: 90  QNRRAKAKRL 99
           QNRR+K K++
Sbjct: 190 QNRRSKFKKI 199


>gi|149061300|gb|EDM11723.1| rCG47496, isoform CRA_b [Rattus norvegicus]
          Length = 284

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 136 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 192


>gi|410909247|ref|XP_003968102.1| PREDICTED: motor neuron and pancreas homeobox protein 1-like
           [Takifugu rubripes]
          Length = 314

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/75 (57%), Positives = 53/75 (70%), Gaps = 6/75 (8%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 177 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 236

Query: 102 A------EIEKIKMS 110
           A      E EK K S
Sbjct: 237 AKEQAAQEAEKQKGS 251


>gi|56118496|ref|NP_001008061.1| distal-less homeobox 2 [Xenopus (Silurana) tropicalis]
 gi|51704087|gb|AAH80947.1| distal-less homeobox 2 [Xenopus (Silurana) tropicalis]
          Length = 285

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/77 (49%), Positives = 59/77 (76%), Gaps = 1/77 (1%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 115 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 174

Query: 89  FQNRRAKAKRL-QEAEI 104
           FQNRR+K K++ +  EI
Sbjct: 175 FQNRRSKFKKMWKSGEI 191


>gi|405973136|gb|EKC37867.1| Homeobox protein Nkx-2.6 [Crassostrea gigas]
          Length = 326

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/78 (46%), Positives = 51/78 (65%)

Query: 21  SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
           +D++K        NL K +  RKPR  F+  Q+  LE++F++++YLS  ER + ++ L L
Sbjct: 167 NDNDKTSEKSGECNLMKQRTRRKPRVLFSQAQVFELERRFKQQRYLSAPEREQLANLLKL 226

Query: 81  TETQVKIWFQNRRAKAKR 98
           T TQVKIWFQNRR K KR
Sbjct: 227 TSTQVKIWFQNRRYKCKR 244


>gi|379030566|dbj|BAL68130.1| distal-less, partial [Nasutitermes takasagoensis]
          Length = 215

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/66 (51%), Positives = 51/66 (77%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K K++ +
Sbjct: 1   RKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKMMK 60

Query: 102 AEIEKI 107
           A  + +
Sbjct: 61  AAQQGV 66


>gi|507425|gb|AAB60647.1| HB9 homeobox protein [Homo sapiens]
          Length = 401

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 243 RRPRTAFTSQQLLELEHQFKFNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 302

Query: 102 AE 103
           A+
Sbjct: 303 AK 304


>gi|442620320|ref|NP_001262808.1| slouch, isoform B [Drosophila melanogaster]
 gi|440217717|gb|AGB96188.1| slouch, isoform B [Drosophila melanogaster]
          Length = 698

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 546 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 602


>gi|196016219|ref|XP_002117963.1| hypothetical protein TRIADDRAFT_49530 [Trichoplax adhaerens]
 gi|190579436|gb|EDV19531.1| hypothetical protein TRIADDRAFT_49530 [Trichoplax adhaerens]
          Length = 294

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 46/63 (73%)

Query: 36  RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
            K K NRKPRT FT+ QL  L  +FR   YL + ERA+ ++SL LT+TQVKIWFQNRR+K
Sbjct: 157 NKGKKNRKPRTIFTSAQLNELNNRFRLSHYLGLPERADLAASLGLTQTQVKIWFQNRRSK 216

Query: 96  AKR 98
            K+
Sbjct: 217 LKK 219


>gi|32816227|gb|AAP88429.1| NK-1 homeobox protein [Nematostella vectensis]
          Length = 275

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/82 (48%), Positives = 52/82 (63%), Gaps = 6/82 (7%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+ RT FT +QL++LE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+   
Sbjct: 158 RRARTAFTYEQLVALENKFKSTRYLSVCERLNLALSLGLTETQVKIWFQNRRTKWKK--- 214

Query: 102 AEIEKIKMSAIAAARPHPLYGP 123
              +   M   A  RP+  +GP
Sbjct: 215 ---QNPGMDVTAPTRPNIPHGP 233


>gi|410896806|ref|XP_003961890.1| PREDICTED: homeobox protein Dlx2a-like [Takifugu rubripes]
          Length = 275

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 53/64 (82%), Gaps = 1/64 (1%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL-Q 100
           RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIWFQNRR+K K+L +
Sbjct: 126 RKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKKLWK 185

Query: 101 EAEI 104
             EI
Sbjct: 186 NGEI 189


>gi|312378783|gb|EFR25258.1| hypothetical protein AND_09570 [Anopheles darlingi]
          Length = 223

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 109 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 165


>gi|7248798|gb|AAF43673.1|AF223361_1 homeodomain protein Nkx-1.2E4.29 [Mus musculus]
          Length = 216

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 157 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 213


>gi|85838365|gb|ABC86114.1| ANTP homeobox protein [Trichoplax adhaerens]
          Length = 294

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/63 (58%), Positives = 46/63 (73%)

Query: 36  RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
            K K NRKPRT FT+ QL  L  +FR   YL + ERA+ ++SL LT+TQVKIWFQNRR+K
Sbjct: 157 NKGKKNRKPRTIFTSAQLNELNNRFRLSHYLGLPERADLAASLGLTQTQVKIWFQNRRSK 216

Query: 96  AKR 98
            K+
Sbjct: 217 LKK 219


>gi|45383802|ref|NP_989490.1| homeobox protein DLX-5 [Gallus gallus]
 gi|1708250|sp|P50577.1|DLX5_CHICK RecName: Full=Homeobox protein DLX-5; Short=cDlx
 gi|6002664|gb|AAF00085.1|AF096161_1 distal-less homeobox protein Dlx [Gallus gallus]
 gi|841438|gb|AAA96145.1| distal-less-5 [Gallus gallus]
          Length = 286

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 124 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 183

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 184 FQNKRSKIKKI 194


>gi|196166495|gb|ACG70806.1| Dlx [Convolutriloba longifissura]
          Length = 536

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 58/85 (68%), Gaps = 7/85 (8%)

Query: 33  VNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNR 92
           ++++  K  RKPRT ++T Q+  L ++F+  QYL++ ERAE +++L LT+TQVKIWFQN+
Sbjct: 247 LSVKGGKKLRKPRTIYSTVQIQQLTRRFQRTQYLALPERAELAAALGLTQTQVKIWFQNK 306

Query: 93  RAKAKRL-------QEAEIEKIKMS 110
           R+K K+L       Q+A  +   MS
Sbjct: 307 RSKMKKLMKGNPGGQDANFDPSAMS 331


>gi|432876077|ref|XP_004072965.1| PREDICTED: barH-like 1 homeobox protein-like [Oryzias latipes]
          Length = 242

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/133 (39%), Positives = 71/133 (53%), Gaps = 8/133 (6%)

Query: 23  SNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTE 82
            NKG      V +R  KP RK RT F+ QQL  LE+ F++++YLS+ +R E ++SL L++
Sbjct: 107 DNKGGRSFDPVGVRLKKP-RKARTAFSDQQLSRLERSFQKQKYLSVQDRIELAASLQLSD 165

Query: 83  TQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQYF------QHA 136
           TQVK W+QNRR K KR   A +E +  S      P     P  SP +  Y        + 
Sbjct: 166 TQVKTWYQNRRTKWKRQSAAGLE-LLASTDKMFLPTHFLCPPTSPIVDSYLYRSPAHHYC 224

Query: 137 SPEALLHHPHPFS 149
            P AL   PH F+
Sbjct: 225 HPTALPLLPHVFT 237


>gi|195453296|ref|XP_002073726.1| GK14259 [Drosophila willistoni]
 gi|194169811|gb|EDW84712.1| GK14259 [Drosophila willistoni]
          Length = 686

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 573 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 629


>gi|301608860|ref|XP_002934006.1| PREDICTED: homeobox protein vab-15-like [Xenopus (Silurana)
           tropicalis]
          Length = 255

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 125 RRPRTAFTSQQLLELENQFKANKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRK 184

Query: 102 AE 103
           A+
Sbjct: 185 AK 186


>gi|198450206|ref|XP_001357880.2| GA19667 [Drosophila pseudoobscura pseudoobscura]
 gi|198130935|gb|EAL27016.2| GA19667 [Drosophila pseudoobscura pseudoobscura]
          Length = 678

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 565 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 621


>gi|13277231|emb|CAC34380.1| Distal-less [Cupiennius salei]
          Length = 314

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 39/76 (51%), Positives = 54/76 (71%), Gaps = 3/76 (3%)

Query: 27  DPPKLNVNLR---KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTET 83
           D  +L   LR   K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+T
Sbjct: 131 DKSQLEETLRVNGKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQT 190

Query: 84  QVKIWFQNRRAKAKRL 99
           QVKIWFQNRR+K K++
Sbjct: 191 QVKIWFQNRRSKYKKM 206


>gi|340723371|ref|XP_003400063.1| PREDICTED: homeobox protein MSX-1-like [Bombus terrestris]
          Length = 331

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           ++PRT FT  Q+ SLE +F   +YLS+A+R + S SL LTETQ+KIWFQNRR K KR   
Sbjct: 173 KRPRTAFTAAQIKSLEAEFERNKYLSVAKRLQLSKSLKLTETQIKIWFQNRRTKWKRKYT 232

Query: 102 AEIEKIK---MSAIAAARPHPLY 121
            ++E +     S++    P P++
Sbjct: 233 NDVELLAQQYYSSLGIPAPRPIF 255


>gi|324523975|gb|ADY48337.1| NK1 transcription factor-related protein 1 [Ascaris suum]
          Length = 217

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/81 (45%), Positives = 52/81 (64%)

Query: 18  PLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSS 77
           PL    N  +  + +V + K    R+ RT FT +QL++LE KF+  +YLS+ ER   + +
Sbjct: 60  PLSPQRNAENGKRRSVAISKGSKTRRARTAFTYEQLVALENKFKSTRYLSVCERLSLAVA 119

Query: 78  LHLTETQVKIWFQNRRAKAKR 98
           L L+ETQVKIWFQNRR K K+
Sbjct: 120 LQLSETQVKIWFQNRRTKWKK 140


>gi|161077784|ref|NP_572815.3| CG11085 [Drosophila melanogaster]
 gi|66571260|gb|AAY51595.1| IP01054p [Drosophila melanogaster]
 gi|158031802|gb|AAF48182.4| CG11085 [Drosophila melanogaster]
 gi|220953298|gb|ACL89192.1| CG11085-PA [synthetic construct]
          Length = 295

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 58/82 (70%), Gaps = 1/82 (1%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           KL ++    KP R+ RT FT  QL  LE+KFR ++YLS+A+R++ + +L+L+ETQVK W+
Sbjct: 150 KLQLSKSGRKPRRR-RTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLNLSETQVKTWY 208

Query: 90  QNRRAKAKRLQEAEIEKIKMSA 111
           QNRR K KR  +  +E+++  A
Sbjct: 209 QNRRTKWKRQNQLRLEQLRHQA 230


>gi|410932729|ref|XP_003979745.1| PREDICTED: homeobox protein Dlx5a-like [Takifugu rubripes]
          Length = 285

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 55/71 (77%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F+  QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 126 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQNTQYLALPERAELAASLGLTQTQVKIW 185

Query: 89  FQNRRAKAKRL 99
           FQNRR+K K++
Sbjct: 186 FQNRRSKIKKI 196


>gi|46048876|ref|NP_990135.1| distal-less homeobox 3 [Gallus gallus]
 gi|5830236|emb|CAB54537.1| DLX3 homeodomain containing protein [Gallus gallus]
 gi|49245976|gb|AAT58228.1| homeodomain transcription factor DLX3 [Gallus gallus]
          Length = 278

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 113 PEPEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 172

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 173 IWFQNRRSKFKKL 185


>gi|443723773|gb|ELU12043.1| hypothetical protein CAPTEDRAFT_149569 [Capitella teleta]
          Length = 215

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/64 (57%), Positives = 45/64 (70%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           KH   RK RT F+ QQL  LEK+F  ++YLS  ER E +S L L+ETQVK WFQNRR K 
Sbjct: 78  KHCRRRKARTVFSDQQLNGLEKRFEVQKYLSTPERVELASQLSLSETQVKTWFQNRRMKQ 137

Query: 97  KRLQ 100
           K++Q
Sbjct: 138 KKVQ 141


>gi|432881669|ref|XP_004073893.1| PREDICTED: homeobox protein Dlx5a-like isoform 1 [Oryzias latipes]
          Length = 286

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 55/71 (77%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F+  QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 127 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQNTQYLALPERAELAASLGLTQTQVKIW 186

Query: 89  FQNRRAKAKRL 99
           FQNRR+K K++
Sbjct: 187 FQNRRSKMKKI 197


>gi|1718495|gb|AAB38415.1| homeodomain protein Dlx-3, partial [Mus musculus]
          Length = 231

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 59  PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 118

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 119 IWFQNRRSKFKKL 131


>gi|344298201|ref|XP_003420782.1| PREDICTED: hypothetical protein LOC100671223 [Loxodonta africana]
          Length = 469

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/76 (55%), Positives = 53/76 (69%), Gaps = 6/76 (7%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 307 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 366

Query: 102 A------EIEKIKMSA 111
           A      E EK K + 
Sbjct: 367 AKEQAAQEAEKQKGAG 382


>gi|426228301|ref|XP_004008251.1| PREDICTED: uncharacterized protein LOC101115361 [Ovis aries]
          Length = 340

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 42/85 (49%), Positives = 60/85 (70%), Gaps = 4/85 (4%)

Query: 18  PLLSDSNKGDPPKLNVNLR---KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEF 74
           PLL+D  K    + N  +R   K K  RKPRT +++ QL +L  +F++ QYL++ ERAE 
Sbjct: 189 PLLADQQKTTVIE-NGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAEL 247

Query: 75  SSSLHLTETQVKIWFQNRRAKAKRL 99
           ++SL LT+TQVKIWFQN+R+K K+L
Sbjct: 248 AASLGLTQTQVKIWFQNKRSKFKKL 272


>gi|6677853|ref|NP_033149.1| NK1 transcription factor-related protein 2 [Mus musculus]
 gi|1170291|sp|P42580.1|NKX12_MOUSE RecName: Full=NK1 transcription factor-related protein 2; AltName:
           Full=Homeobox protein SAX-1; AltName: Full=NKX-1.1
 gi|7248794|gb|AAF43671.1|AF222444_1 homeodomain protein [Mus musculus]
 gi|453172|emb|CAA53153.1| Sax-1 [Mus musculus]
 gi|7248791|gb|AAF43669.1| homeobox protein [Mus musculus]
 gi|141796983|gb|AAI39758.1| NK1 transcription factor related, locus 2 (Drosophila) [Mus
           musculus]
 gi|148685786|gb|EDL17733.1| NK1 transcription factor related, locus 2 (Drosophila), isoform
           CRA_b [Mus musculus]
          Length = 305

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 157 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 213


>gi|359068353|ref|XP_003586459.1| PREDICTED: homeobox protein Nkx-2.6-like [Bos taurus]
          Length = 358

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 46/60 (76%)

Query: 39  KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           +P RKPR  F+  Q+L+LE++F++++YLS  ER   +S+L LT TQVKIWFQNRR K KR
Sbjct: 131 RPRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKR 190


>gi|432936055|ref|XP_004082098.1| PREDICTED: uncharacterized protein LOC101175206 [Oryzias latipes]
          Length = 303

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/57 (64%), Positives = 45/57 (78%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR
Sbjct: 155 RRPRTAFTSQQLLELENQFKVNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKR 211


>gi|49170098|ref|NP_990468.1| homeobox protein Nkx-2.6 [Gallus gallus]
 gi|2117156|emb|CAA71665.1| NKX2.8 [Gallus gallus]
          Length = 193

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/86 (46%), Positives = 54/86 (62%), Gaps = 4/86 (4%)

Query: 13  LILSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERA 72
            +LS PL +D  + DP     +  K    RKPR  F+  Q+L LE++F++++YLS  ER 
Sbjct: 40  CLLSQPLQADQQQTDP----CHHPKQPQRRKPRVLFSQTQVLELERRFKQQKYLSALERE 95

Query: 73  EFSSSLHLTETQVKIWFQNRRAKAKR 98
             ++ L LT TQVKIWFQNRR K KR
Sbjct: 96  HLANVLQLTSTQVKIWFQNRRYKCKR 121


>gi|195396503|ref|XP_002056871.1| GJ16761 [Drosophila virilis]
 gi|194146638|gb|EDW62357.1| GJ16761 [Drosophila virilis]
          Length = 281

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 57/82 (69%), Gaps = 1/82 (1%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           KL ++    KP R+ RT FT  QL  LE+KFR ++YLS+A+R++ + +L L+ETQVK W+
Sbjct: 135 KLQLSKSGRKPRRR-RTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLSLSETQVKTWY 193

Query: 90  QNRRAKAKRLQEAEIEKIKMSA 111
           QNRR K KR  +  +E+++  A
Sbjct: 194 QNRRTKWKRQNQLRLEQLRHQA 215


>gi|326921532|ref|XP_003207011.1| PREDICTED: motor neuron and pancreas homeobox protein 1-like
           [Meleagris gallopavo]
          Length = 210

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 47/90 (52%), Positives = 56/90 (62%), Gaps = 8/90 (8%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR--- 98
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR   
Sbjct: 54  RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 113

Query: 99  -----LQEAEIEKIKMSAIAAARPHPLYGP 123
                 QEAE +K       AA    L GP
Sbjct: 114 AKEQAAQEAEKQKGGGGEDKAAEEVLLPGP 143


>gi|194899444|ref|XP_001979269.1| GG14462 [Drosophila erecta]
 gi|190650972|gb|EDV48227.1| GG14462 [Drosophila erecta]
          Length = 663

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 550 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 606


>gi|143347284|gb|ABO93220.1| Hb9 [Platynereis dumerilii]
          Length = 170

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/58 (62%), Positives = 47/58 (81%)

Query: 41  NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           +R+PRT FT+QQLL LE++F+  +YLS  +R E +++L LTETQVKIWFQNRR K KR
Sbjct: 113 SRRPRTAFTSQQLLELERQFKMNKYLSRPKRFEVATTLMLTETQVKIWFQNRRMKWKR 170


>gi|148228706|ref|NP_001090515.1| homeobox protein DLL-2 [Xenopus laevis]
 gi|1708245|sp|P53774.1|DLL2_XENLA RecName: Full=Homeobox protein DLL-2; Short=XDLL-2
 gi|2134193|pir||I51258 Xdll-2 protein - clawed frog
 gi|9256509|gb|AAB31740.2| distal-less homeobox protein [Xenopus]
 gi|114108110|gb|AAI23269.1| Dlx3 protein [Xenopus laevis]
          Length = 277

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 116 PETEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 175

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 176 IWFQNRRSKFKKL 188


>gi|405966867|gb|EKC32099.1| Homeobox protein slou [Crassostrea gigas]
          Length = 297

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL++LE KF+  +YLS+ ER   + SL+LTETQVKIWFQNRR K K+
Sbjct: 170 RRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLNLTETQVKIWFQNRRTKWKK 226


>gi|164523612|gb|ABY60841.1| Nkx5-3 [Danio rerio]
          Length = 282

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 48/69 (69%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 151 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 210

Query: 102 AEIEKIKMS 110
           A++E +  +
Sbjct: 211 ADLEAVNFN 219


>gi|15637263|gb|AAL04486.1|AF365972_1 transcription factor Nkx5-2 [Oryzias latipes]
          Length = 221

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 45/95 (47%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
           LSD  + D      N  K    +K RT F+  Q+  LE  F  K+YLS +ERA  +SSL 
Sbjct: 80  LSDDRQTDGADKQSNSAK----KKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQ 135

Query: 80  LTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAA 114
           LTETQVK WFQNRR K KR   AE+E   M+  +A
Sbjct: 136 LTETQVKTWFQNRRNKWKRQLSAELEAANMAHASA 170


>gi|158292431|ref|XP_001688472.1| AGAP005041-PA [Anopheles gambiae str. PEST]
 gi|157016989|gb|EDO64055.1| AGAP005041-PA [Anopheles gambiae str. PEST]
          Length = 263

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/65 (56%), Positives = 49/65 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LEK+F+  +YLS  +R E +++L L+ETQVKIWFQNRR K KR ++
Sbjct: 13  RRPRTAFTSQQLLELEKQFKVSKYLSRPKRYEVANNLLLSETQVKIWFQNRRMKWKRSRK 72

Query: 102 AEIEK 106
               K
Sbjct: 73  VNESK 77


>gi|410901026|ref|XP_003963997.1| PREDICTED: homeobox protein HMX2-like [Takifugu rubripes]
 gi|410930960|ref|XP_003978865.1| PREDICTED: homeobox protein HMX2-like [Takifugu rubripes]
          Length = 273

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/95 (45%), Positives = 55/95 (57%), Gaps = 4/95 (4%)

Query: 20  LSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH 79
           LSD  + D      + +     +K RT F+  Q+  LE  F  K+YLS +ERA  +SSL 
Sbjct: 132 LSDERQAD----GADKQSSSAKKKTRTVFSRSQVYQLESTFDMKRYLSSSERACLASSLQ 187

Query: 80  LTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAA 114
           LTETQVK WFQNRR K KR   AE+E   M+  +A
Sbjct: 188 LTETQVKTWFQNRRNKWKRQLSAELEAANMAHASA 222


>gi|351711623|gb|EHB14542.1| NK1 transcription factor-related protein 2 [Heterocephalus glaber]
          Length = 312

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 164 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 220


>gi|347963918|ref|XP_310605.5| AGAP000488-PA [Anopheles gambiae str. PEST]
 gi|333466974|gb|EAA06491.5| AGAP000488-PA [Anopheles gambiae str. PEST]
          Length = 598

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 40/77 (51%), Positives = 50/77 (64%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P  N +  + K  +K RT F+  Q+  LE  F  K+YLS +ERA  ++SL LTETQVKIW
Sbjct: 460 PNSNGSAMQAKRKKKTRTVFSRAQVFQLESTFDLKRYLSSSERAGLAASLRLTETQVKIW 519

Query: 89  FQNRRAKAKRLQEAEIE 105
           FQNRR K KR   AE+E
Sbjct: 520 FQNRRNKWKRQLAAELE 536


>gi|297682122|ref|XP_002818780.1| PREDICTED: motor neuron and pancreas homeobox protein 1 [Pongo
           abelii]
          Length = 364

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 205 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 264

Query: 102 AE 103
           A+
Sbjct: 265 AK 266


>gi|73979059|ref|XP_539936.2| PREDICTED: motor neuron and pancreas homeobox protein 1 [Canis
           lupus familiaris]
          Length = 319

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 157 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 216

Query: 102 AE 103
           A+
Sbjct: 217 AK 218


>gi|350403347|ref|XP_003486774.1| PREDICTED: homeobox protein MSX-1-like [Bombus impatiens]
          Length = 331

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 3/83 (3%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           ++PRT FT  Q+ SLE +F   +YLS+A+R + S SL LTETQ+KIWFQNRR K KR   
Sbjct: 173 KRPRTAFTAAQIKSLEAEFERNKYLSVAKRLQLSKSLKLTETQIKIWFQNRRTKWKRKYT 232

Query: 102 AEIEKIK---MSAIAAARPHPLY 121
            ++E +     S++    P P++
Sbjct: 233 NDVELLAQQYYSSLGIPAPRPIF 255


>gi|395859826|ref|XP_003802230.1| PREDICTED: motor neuron and pancreas homeobox protein 1 [Otolemur
           garnettii]
          Length = 288

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 125 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 184

Query: 102 AE 103
           A+
Sbjct: 185 AK 186


>gi|327282958|ref|XP_003226209.1| PREDICTED: homeobox protein DLX-2-like [Anolis carolinensis]
          Length = 335

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 58/74 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 127 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 186

Query: 89  FQNRRAKAKRLQEA 102
           FQNRR+K K++ ++
Sbjct: 187 FQNRRSKFKKMWKS 200


>gi|308487730|ref|XP_003106060.1| CRE-CEH-43 protein [Caenorhabditis remanei]
 gi|308254634|gb|EFO98586.1| CRE-CEH-43 protein [Caenorhabditis remanei]
          Length = 301

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/62 (58%), Positives = 47/62 (75%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT + TQQL  L+KKF + QYL++ +RA  ++ L LT+TQVKIWFQNRR+K 
Sbjct: 98  KGKKMRKPRTIYNTQQLAQLQKKFDKTQYLALPDRAALAAELGLTQTQVKIWFQNRRSKQ 157

Query: 97  KR 98
           K+
Sbjct: 158 KK 159


>gi|227558994|ref|NP_001153132.1| homeobox protein DLX-5 [Sus scrofa]
 gi|158142212|gb|ABW20464.1| distal-less homeobox 5 [Sus scrofa]
          Length = 289

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|194745256|ref|XP_001955104.1| GF16414 [Drosophila ananassae]
 gi|190628141|gb|EDV43665.1| GF16414 [Drosophila ananassae]
          Length = 667

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 554 RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 610


>gi|165377177|ref|NP_001106998.1| homeobox protein HMX1 [Danio rerio]
 gi|157987315|gb|ABW07819.1| homeobox transcription factor SOHo [Danio rerio]
          Length = 282

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 37/69 (53%), Positives = 48/69 (69%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 151 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 210

Query: 102 AEIEKIKMS 110
           A++E +  +
Sbjct: 211 ADLEAVNFN 219


>gi|56385113|gb|AAV85987.1| Dlx5 [Triakis semifasciata]
          Length = 277

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 54/67 (80%), Gaps = 1/67 (1%)

Query: 39  KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIWFQNRR+K K+
Sbjct: 128 KKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKIKK 187

Query: 99  -LQEAEI 104
            ++  EI
Sbjct: 188 IIKNGEI 194


>gi|157634|gb|AAA28616.1| regulatory DNA binding protein, partial [Drosophila melanogaster]
          Length = 129

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 50  RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 106


>gi|301621867|ref|XP_002940264.1| PREDICTED: homeobox protein HMX1-like [Xenopus (Silurana)
           tropicalis]
          Length = 278

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/69 (55%), Positives = 48/69 (69%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  ++SLHLTETQVKIWFQNRR K KR   
Sbjct: 148 KKTRTVFSRSQVFQLESTFDMKRYLSSSERAGLAASLHLTETQVKIWFQNRRNKWKRQLA 207

Query: 102 AEIEKIKMS 110
           A++E   +S
Sbjct: 208 ADLEAANIS 216


>gi|194578879|ref|NP_001034528.2| distal-less [Tribolium castaneum]
 gi|270011030|gb|EFA07478.1| distal-less [Tribolium castaneum]
          Length = 306

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 49/61 (80%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K K++ +
Sbjct: 122 RKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKMMK 181

Query: 102 A 102
           A
Sbjct: 182 A 182


>gi|195133470|ref|XP_002011162.1| GI16386 [Drosophila mojavensis]
 gi|193907137|gb|EDW06004.1| GI16386 [Drosophila mojavensis]
          Length = 185

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 57/82 (69%), Gaps = 1/82 (1%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           KL ++    KP R+ RT FT  QL  LE+KFR ++YLS+A+R++ + +L L+ETQVK W+
Sbjct: 38  KLQLSKSGRKPRRR-RTAFTHAQLAYLERKFRCQKYLSVADRSDVAETLSLSETQVKTWY 96

Query: 90  QNRRAKAKRLQEAEIEKIKMSA 111
           QNRR K KR  +  +E+++  A
Sbjct: 97  QNRRTKWKRQNQLRLEQLRHQA 118


>gi|109090873|ref|XP_001083181.1| PREDICTED: NK1 transcription factor-related protein 2 [Macaca
           mulatta]
          Length = 309

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 164 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 220


>gi|38524596|ref|NP_034186.2| homeobox protein DLX-5 isoform 1 [Mus musculus]
 gi|2495278|sp|P70396.1|DLX5_MOUSE RecName: Full=Homeobox protein DLX-5
 gi|9294722|gb|AAF86636.1|AF072452_1 homeodomain protein DLX5 [Mus musculus]
 gi|1620524|gb|AAC52843.1| Dlx5 [Mus musculus]
 gi|2642131|gb|AAB86899.1| homeobox protein [Mus musculus]
 gi|74182592|dbj|BAE34656.1| unnamed protein product [Mus musculus]
 gi|148682004|gb|EDL13951.1| distal-less homeobox 5, isoform CRA_a [Mus musculus]
          Length = 289

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|126326317|ref|XP_001368046.1| PREDICTED: homeobox protein DLX-2-like [Monodelphis domestica]
          Length = 329

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/64 (53%), Positives = 53/64 (82%)

Query: 39  KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIWFQNRR+K K+
Sbjct: 145 KKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNRRSKFKK 204

Query: 99  LQEA 102
           + ++
Sbjct: 205 MWKS 208


>gi|47216917|emb|CAG02089.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 234

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/75 (50%), Positives = 53/75 (70%), Gaps = 2/75 (2%)

Query: 27  DPPKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQ 84
           + P   V +   KP   RKPRT +++ QL  L++KF+  QYL++ ERAE ++ L LT+TQ
Sbjct: 105 EEPDAEVRMVNGKPKKVRKPRTIYSSYQLAVLQRKFQSAQYLALPERAELAAQLGLTQTQ 164

Query: 85  VKIWFQNRRAKAKRL 99
           VKIWFQNRR+K K+L
Sbjct: 165 VKIWFQNRRSKFKKL 179


>gi|195486835|ref|XP_002091670.1| GE12123 [Drosophila yakuba]
 gi|194177771|gb|EDW91382.1| GE12123 [Drosophila yakuba]
          Length = 380

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/102 (38%), Positives = 59/102 (57%), Gaps = 9/102 (8%)

Query: 15  LSSPLLSDS--NKGDPPKLNVNLRKHKPN-------RKPRTPFTTQQLLSLEKKFREKQY 65
           +SSP  S    +  D  K +++L     N       ++PRT F+  Q+ +LE +F   +Y
Sbjct: 51  VSSPATSSCLEDNMDDGKSDIDLASDDGNGLGDDRKKRPRTAFSAAQIKALETEFERGKY 110

Query: 66  LSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKI 107
           LS+A+R   +  L LTETQ+KIWFQNRR K KR   +++E +
Sbjct: 111 LSVAKRTSLAKQLQLTETQIKIWFQNRRTKWKRKYTSDVETL 152


>gi|195154781|ref|XP_002018291.1| GL16839 [Drosophila persimilis]
 gi|194114087|gb|EDW36130.1| GL16839 [Drosophila persimilis]
          Length = 491

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 46/55 (83%)

Query: 46  TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           T FT++QLL LE++F  K+YLS+ ER++ ++SL L+E QVKIWFQNRRAK KR++
Sbjct: 328 TAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVK 382


>gi|195121174|ref|XP_002005096.1| GI20286 [Drosophila mojavensis]
 gi|193910164|gb|EDW09031.1| GI20286 [Drosophila mojavensis]
          Length = 392

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/87 (42%), Positives = 53/87 (60%), Gaps = 1/87 (1%)

Query: 22  DSNKGDPPKLNVNLRKHKPNRK-PRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
           D NK D    + +   H   +K PRT F+  Q+ +LE +F   +YLS+A+R   +  L L
Sbjct: 73  DDNKSDIELASDDGSAHDDRKKRPRTAFSAAQIKALETEFERGKYLSVAKRTALAKQLQL 132

Query: 81  TETQVKIWFQNRRAKAKRLQEAEIEKI 107
           TETQ+KIWFQNRR K KR   +++E +
Sbjct: 133 TETQIKIWFQNRRTKWKRKYTSDVETL 159


>gi|1708246|sp|P50575.1|DLX5_RAT RecName: Full=Homeobox protein DLX-5; AltName: Full=Homeobox
           protein DLX-3; AltName: Full=RDLX
 gi|603960|dbj|BAA06534.1| Dlx-3 hoemeobox protein [Rattus norvegicus]
          Length = 289

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|395532728|ref|XP_003768420.1| PREDICTED: homeobox protein DLX-3 [Sarcophilus harrisii]
          Length = 291

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 55/71 (77%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVKIW
Sbjct: 117 PEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIW 176

Query: 89  FQNRRAKAKRL 99
           FQNRR+K K+L
Sbjct: 177 FQNRRSKFKKL 187


>gi|158300107|ref|XP_320094.4| AGAP009302-PA [Anopheles gambiae str. PEST]
 gi|157013842|gb|EAA15156.4| AGAP009302-PA [Anopheles gambiae str. PEST]
          Length = 334

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/101 (42%), Positives = 61/101 (60%), Gaps = 4/101 (3%)

Query: 8   FLNEILILSSPLLSDSNKGDPP---KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQ 64
           FL++ +  SSPL   +   D      + ++  +H   RK RT F+  QL  LEK+F  ++
Sbjct: 229 FLSQGIFASSPLFPGAGCPDIALGLGMGMSALRHCRRRKARTVFSDPQLTGLEKRFEAQR 288

Query: 65  YLSIAERAEFSSSLHLTETQVKIWFQNRRAK-AKRLQEAEI 104
           YLS  ER E +S+L L+ETQVK WFQNRR K  K+L+  E+
Sbjct: 289 YLSTPERVELASALGLSETQVKTWFQNRRMKHKKQLRRREV 329


>gi|126308285|ref|XP_001367695.1| PREDICTED: homeobox protein DLX-3-like [Monodelphis domestica]
          Length = 286

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/71 (50%), Positives = 55/71 (77%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVKIW
Sbjct: 117 PEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVKIW 176

Query: 89  FQNRRAKAKRL 99
           FQNRR+K K+L
Sbjct: 177 FQNRRSKFKKL 187


>gi|383855364|ref|XP_003703183.1| PREDICTED: homeobox protein rough-like [Megachile rotundata]
          Length = 305

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 52/71 (73%)

Query: 36  RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
           RK    R+ RT F+ +Q L LE ++R  +Y+S   R E ++SL LTETQ+KIWFQNRRAK
Sbjct: 161 RKEGRPRRQRTTFSGEQTLRLEVEYRRGEYISRGRRFELATSLQLTETQIKIWFQNRRAK 220

Query: 96  AKRLQEAEIEK 106
            KR+++A++++
Sbjct: 221 DKRIEKAQLDQ 231


>gi|3005960|emb|CAA76300.1| NK [Lineus sanguineus]
          Length = 106

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/57 (59%), Positives = 44/57 (77%)

Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
          R+ RT FT +QL++LE KF+  +YLS+ ER   + SL+LTETQVKIWFQNRR K K+
Sbjct: 15 RRARTAFTYEQLVALENKFKTTRYLSVCERLNLALSLNLTETQVKIWFQNRRTKWKK 71


>gi|7839212|gb|AAF70205.1| H6 homeodomain protein [Homo sapiens]
          Length = 373

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/66 (57%), Positives = 45/66 (68%)

Query: 45  RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           RT F+  Q+  LE  F  K+YLS AERA  ++SL LTETQVKIWFQNRR K KR   AE+
Sbjct: 204 RTVFSRSQVFQLESTFDLKRYLSTAERAGLAASLQLTETQVKIWFQNRRNKWKRHVAAEL 263

Query: 105 EKIKMS 110
           E   +S
Sbjct: 264 EAASLS 269


>gi|296210133|ref|XP_002807092.1| PREDICTED: LOW QUALITY PROTEIN: motor neuron and pancreas homeobox
           protein 1 [Callithrix jacchus]
          Length = 293

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 134 RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 193

Query: 102 AE 103
           A+
Sbjct: 194 AK 195


>gi|170070126|ref|XP_001869473.1| nk homeobox protein [Culex quinquefasciatus]
 gi|167866042|gb|EDS29425.1| nk homeobox protein [Culex quinquefasciatus]
          Length = 209

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL+SLE KF+  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 95  RRARTAFTYEQLVSLENKFKTTRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 151


>gi|73975830|ref|XP_850412.1| PREDICTED: homeobox protein DLX-5 isoform 2 [Canis lupus
           familiaris]
          Length = 289

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|351715011|gb|EHB17930.1| Motor neuron and pancreas homeobox protein 1 [Heterocephalus
           glaber]
          Length = 220

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/62 (61%), Positives = 49/62 (79%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 77  RRPRTAFTSQQLLELEHQFKLNKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSKK 136

Query: 102 AE 103
           A+
Sbjct: 137 AK 138


>gi|125809459|ref|XP_001361128.1| GA14073 [Drosophila pseudoobscura pseudoobscura]
 gi|122121193|sp|Q28ZA9.1|UNPG_DROPS RecName: Full=Homeobox protein unplugged
 gi|54636302|gb|EAL25705.1| GA14073 [Drosophila pseudoobscura pseudoobscura]
          Length = 491

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 33/55 (60%), Positives = 46/55 (83%)

Query: 46  TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           T FT++QLL LE++F  K+YLS+ ER++ ++SL L+E QVKIWFQNRRAK KR++
Sbjct: 328 TAFTSEQLLELEREFHAKKYLSLTERSQIATSLKLSEVQVKIWFQNRRAKWKRVK 382


>gi|82621595|gb|ABB86469.1| GBX-ANTP class homeobox protein, partial [Nematostella vectensis]
 gi|110339015|gb|ABG67771.1| GBX, partial [Nematostella vectensis]
          Length = 60

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 34/59 (57%), Positives = 49/59 (83%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
           R+ RT FT++QLL LE++F  K+Y+S+ ER+  +++L+LTE QVKIWFQNRRAK KR++
Sbjct: 2   RRKRTAFTSKQLLQLEREFHNKKYVSLEERSVIATNLNLTEVQVKIWFQNRRAKWKRVR 60


>gi|402881755|ref|XP_003904430.1| PREDICTED: NK1 transcription factor-related protein 2 [Papio
           anubis]
          Length = 309

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 164 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 220


>gi|344279231|ref|XP_003411393.1| PREDICTED: hypothetical protein LOC100675193 [Loxodonta africana]
          Length = 635

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 48/78 (61%), Gaps = 13/78 (16%)

Query: 21  SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
           SDS  G P             R+ RT FT +QL++LE KF+  +YLS+ ER   + SL L
Sbjct: 476 SDSKSGKP-------------RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSL 522

Query: 81  TETQVKIWFQNRRAKAKR 98
           TETQVKIWFQNRR K K+
Sbjct: 523 TETQVKIWFQNRRTKWKK 540


>gi|307172025|gb|EFN63619.1| BarH-like 1 homeobox protein [Camponotus floridanus]
          Length = 341

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/117 (35%), Positives = 65/117 (55%), Gaps = 3/117 (2%)

Query: 8   FLNEILILSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLS 67
            + E    SS   S +++    K    +   +  ++PRT FT  Q+ SLE +F   +YLS
Sbjct: 148 IVAEACTSSSGANSTTDRDTQEKTAAAISDDERKKRPRTAFTAAQIKSLEAEFERNKYLS 207

Query: 68  IAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKM---SAIAAARPHPLY 121
           +A+R + S +L LTETQ+KIWFQNRR K KR    ++E +     S++    P P++
Sbjct: 208 VAKRLQLSKNLKLTETQIKIWFQNRRTKWKRKYTNDVELLAQQYYSSLGIPAPRPIF 264


>gi|327274810|ref|XP_003222169.1| PREDICTED: homeobox protein DLX-5-like [Anolis carolinensis]
          Length = 336

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 172 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 231

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 232 FQNKRSKIKKI 242


>gi|322790110|gb|EFZ15143.1| hypothetical protein SINV_13435 [Solenopsis invicta]
          Length = 203

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/70 (48%), Positives = 51/70 (72%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+ RT FT  QL  LE+KFR ++YLS+A+R++ + +L L+ETQVK W+QNRR K KR  +
Sbjct: 63  RRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVADALSLSETQVKTWYQNRRTKWKRQNQ 122

Query: 102 AEIEKIKMSA 111
             +E+++  A
Sbjct: 123 LRLEQLRHQA 132


>gi|344270668|ref|XP_003407166.1| PREDICTED: homeobox protein DLX-5-like [Loxodonta africana]
          Length = 289

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|354478603|ref|XP_003501504.1| PREDICTED: homeobox protein DLX-5-like isoform 1 [Cricetulus
           griseus]
 gi|344242914|gb|EGV99017.1| Homeobox protein DLX-5 [Cricetulus griseus]
          Length = 289

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|443683337|gb|ELT87636.1| hypothetical protein CAPTEDRAFT_30886, partial [Capitella teleta]
          Length = 65

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/56 (60%), Positives = 44/56 (78%)

Query: 43 KPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
          + RT FT +QL++LE KFR+ +YLS+ ER   + SL+LTETQVKIWFQNRR K K+
Sbjct: 1  RVRTAFTYEQLVALENKFRQTRYLSVCERLNLALSLNLTETQVKIWFQNRRTKWKK 56


>gi|410930063|ref|XP_003978418.1| PREDICTED: barH-like 1 homeobox protein-like [Takifugu rubripes]
          Length = 325

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/117 (39%), Positives = 67/117 (57%), Gaps = 12/117 (10%)

Query: 35  LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
           +R  KP RK RT FT  QL  LE+ F  ++YLS+ +R E ++SL+LT+TQVK W+QNRR 
Sbjct: 168 VRLKKP-RKARTAFTDHQLAQLERSFERQKYLSVQDRMELAASLNLTDTQVKTWYQNRRT 226

Query: 95  KAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHHPHPFSAL 151
           K KR     +E +  +   AA         PSP+ +       P++L+ +  P +AL
Sbjct: 227 KWKRQTAVGLELLAETGNYAALQRMF----PSPYFY-------PQSLVSNLDPGAAL 272


>gi|391347917|ref|XP_003748200.1| PREDICTED: uncharacterized protein LOC100906611 [Metaseiulus
           occidentalis]
          Length = 281

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/78 (50%), Positives = 54/78 (69%), Gaps = 3/78 (3%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR--- 98
           +K RT FT +Q+  LEK+F  K+YLS +ERAE +  L++TETQVKIWFQNRR K K+   
Sbjct: 43  KKARTTFTGRQIFELEKQFELKKYLSSSERAEMAKLLNVTETQVKIWFQNRRTKWKKQDG 102

Query: 99  LQEAEIEKIKMSAIAAAR 116
           +  AE  ++KM   A ++
Sbjct: 103 ISNAEAAELKMGEKAKSK 120


>gi|327260316|ref|XP_003214980.1| PREDICTED: brain-specific homeobox protein homolog [Anolis
           carolinensis]
          Length = 265

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/70 (55%), Positives = 52/70 (74%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+PRT FT+QQLL LE +F+  +YLS  +R E ++SL LTETQVKIWFQNRR K KR ++
Sbjct: 119 RRPRTAFTSQQLLELENQFKINKYLSRPKRFEVATSLMLTETQVKIWFQNRRMKWKRSRK 178

Query: 102 AEIEKIKMSA 111
           A+ + +   A
Sbjct: 179 AKEQVMGAEA 188


>gi|115496790|ref|NP_001068781.1| homeobox protein DLX-5 [Bos taurus]
 gi|92097509|gb|AAI14750.1| Distal-less homeobox 5 [Bos taurus]
 gi|296488673|tpg|DAA30786.1| TPA: distal-less homeobox 5 [Bos taurus]
 gi|440913197|gb|ELR62678.1| Homeobox protein DLX-5 [Bos grunniens mutus]
          Length = 289

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|2738973|gb|AAB94580.1| Dlx-5 alpha [Mus musculus]
          Length = 288

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 124 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 183

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 184 FQNKRSKIKKI 194


>gi|193083003|ref|NP_001122333.1| homeobox transcription factor Hox1 [Ciona intestinalis]
 gi|70569882|dbj|BAE06495.1| transcription factor protein [Ciona intestinalis]
          Length = 365

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/78 (47%), Positives = 54/78 (69%), Gaps = 1/78 (1%)

Query: 45  RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEI 104
           RT FTT+QL  LEK+F   +YL+ A R E +++L L ETQVKIWFQNRR K K+ ++ E 
Sbjct: 238 RTNFTTKQLTELEKEFHFNKYLTRARRVEIAAALRLNETQVKIWFQNRRMKQKK-RDKEA 296

Query: 105 EKIKMSAIAAARPHPLYG 122
           EK+  + ++ ++   L+G
Sbjct: 297 EKLNGNKMSQSKSETLHG 314


>gi|441494180|gb|AGC50804.1| distal-less protein [Nilaparvata lugens]
          Length = 278

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/66 (54%), Positives = 50/66 (75%)

Query: 34  NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
           N  K K  RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR
Sbjct: 64  NNGKGKKMRKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRR 123

Query: 94  AKAKRL 99
           +K K++
Sbjct: 124 SKYKKM 129


>gi|1705493|sp|P53770.1|DLX3_NOTVI RecName: Full=Homeobox protein DLX-3; AltName: Full=Box-4; AltName:
           Full=NvHbox-4
 gi|432378|emb|CAA45094.1| NvHBox-4 protein [Notophthalmus viridescens]
          Length = 273

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 61/85 (71%), Gaps = 3/85 (3%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 111 PEPEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 170

Query: 87  IWFQNRRAKAKRL-QEAEIEKIKMS 110
           IWFQNRR+K K+L +  E+  ++ S
Sbjct: 171 IWFQNRRSKFKKLYKNGEVPGMEHS 195


>gi|410952338|ref|XP_003982838.1| PREDICTED: homeobox protein DLX-5 [Felis catus]
          Length = 289

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|194209659|ref|XP_001494626.2| PREDICTED: homeobox protein DLX-6-like [Equus caballus]
          Length = 190

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/86 (48%), Positives = 60/86 (69%), Gaps = 4/86 (4%)

Query: 17  SPLLSDSNKGDPPKLNVNLR---KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAE 73
            PLL+D  K    + N  +R   K K  RKPRT +++ QL +L  +F++ QYL++ ERAE
Sbjct: 38  CPLLADQQKTTVIE-NGEIRFNGKGKKIRKPRTIYSSLQLQALNHRFQQTQYLALPERAE 96

Query: 74  FSSSLHLTETQVKIWFQNRRAKAKRL 99
            ++SL LT+TQVKIWFQN+R+K K+L
Sbjct: 97  LAASLGLTQTQVKIWFQNKRSKFKKL 122


>gi|85719149|dbj|BAE78537.1| distal-less [Harmonia axyridis]
          Length = 226

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/61 (55%), Positives = 49/61 (80%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           RKPRT +++ QL  L ++F+  QYL++ ERAE ++SL LT+TQVKIWFQNRR+K K++ +
Sbjct: 122 RKPRTIYSSLQLQQLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNRRSKYKKMMK 181

Query: 102 A 102
           A
Sbjct: 182 A 182


>gi|402877779|ref|XP_003902594.1| PREDICTED: homeobox protein Nkx-2.6 [Papio anubis]
          Length = 301

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/119 (39%), Positives = 67/119 (56%), Gaps = 10/119 (8%)

Query: 18  PLLSDSNKGDPPKLNVNLR-KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
           P     N GD  +   + + K +  RKPR  F+  Q+L+LE++F++++YLS  ER   +S
Sbjct: 108 PECGVGNGGDSVRGGRSEQPKARQRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLAS 167

Query: 77  SLHLTETQVKIWFQNRRAKAKRLQEA---EIEKIKMSAIAAARP------HPLYGPGPS 126
           +L LT TQVKIWFQNRR K KR ++    E+    ++    A P       P  GPGPS
Sbjct: 168 ALQLTSTQVKIWFQNRRYKCKRQRQDKSLELAGHPLTPRRVAVPVLVRDGKPCLGPGPS 226


>gi|311267587|ref|XP_003131638.1| PREDICTED: homeobox protein DLX-3-like [Sus scrofa]
          Length = 287

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/73 (50%), Positives = 54/73 (73%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE  + L LT+TQVK
Sbjct: 115 PEAEVRMVNGKPKKVRKPRTIYSSYQLAALQRRFQKAQYLALPERAELPAQLGLTQTQVK 174

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K+L
Sbjct: 175 IWFQNRRSKFKKL 187


>gi|293341807|ref|XP_001065657.2| PREDICTED: NK1 transcription factor-related protein 1-like [Rattus
           norvegicus]
 gi|293353241|ref|XP_234082.5| PREDICTED: NK1 transcription factor-related protein 1-like [Rattus
           norvegicus]
          Length = 403

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           +   + +  KP R+ RT FT +QL++LE KF+  +YLS+ ER   + SL LTETQVKIWF
Sbjct: 241 RTGSDSKSGKP-RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWF 299

Query: 90  QNRRAKAKR 98
           QNRR K K+
Sbjct: 300 QNRRTKWKK 308


>gi|149705535|ref|XP_001494199.1| PREDICTED: homeobox protein DLX-5-like [Equus caballus]
          Length = 289

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|109067422|ref|XP_001090332.1| PREDICTED: homeobox protein DLX-5 [Macaca mulatta]
 gi|402864153|ref|XP_003896341.1| PREDICTED: homeobox protein DLX-5 [Papio anubis]
 gi|355560808|gb|EHH17494.1| hypothetical protein EGK_13913 [Macaca mulatta]
 gi|355747824|gb|EHH52321.1| hypothetical protein EGM_12746 [Macaca fascicularis]
          Length = 289

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|432848424|ref|XP_004066338.1| PREDICTED: homeobox protein HMX2-like [Oryzias latipes]
          Length = 237

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/64 (59%), Positives = 45/64 (70%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+ +Q+  LE  F  K+YLS AERA  +SSL LTETQVKIWFQNRR K KR   
Sbjct: 109 KKTRTIFSKRQIFQLESTFDMKRYLSSAERACLASSLQLTETQVKIWFQNRRNKLKRQIS 168

Query: 102 AEIE 105
            EI+
Sbjct: 169 TEID 172


>gi|291190288|ref|NP_001167227.1| Homeobox protein Nkx-2.3 [Salmo salar]
 gi|223648764|gb|ACN11140.1| Homeobox protein Nkx-2.3 [Salmo salar]
          Length = 368

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 58/98 (59%), Gaps = 5/98 (5%)

Query: 2   VDLPQLFLNEILILSSPLLS-DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKF 60
           VDL         ++S PL   DS +GD  +      K +  RKPR  F+  Q+  LE++F
Sbjct: 150 VDLEDQENKICGVVSKPLEGEDSGQGDSDRP----AKQRTRRKPRVLFSQVQVFELERRF 205

Query: 61  REKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           ++++YLS  ER   +S+L LT TQVKIWFQNRR K KR
Sbjct: 206 KQQRYLSAPEREHLASTLKLTSTQVKIWFQNRRYKCKR 243


>gi|2842678|sp|Q90229.1|DLX3_AMBME RecName: Full=Homeobox protein DLX-3
 gi|1399861|gb|AAB49668.1| distal-less [Ambystoma mexicanum]
          Length = 280

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 39/85 (45%), Positives = 61/85 (71%), Gaps = 3/85 (3%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 112 PEPEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 171

Query: 87  IWFQNRRAKAKRL-QEAEIEKIKMS 110
           IWFQNRR+K K+L +  E+  ++ S
Sbjct: 172 IWFQNRRSKFKKLYKNGEVPGMEHS 196


>gi|395818671|ref|XP_003782744.1| PREDICTED: homeobox protein DLX-5 [Otolemur garnettii]
          Length = 289

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|351704084|gb|EHB07003.1| NK1 transcription factor-related protein 1 [Heterocephalus glaber]
          Length = 290

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           +   + +  KP R+ RT FT +QL++LE KF+  +YLS+ ER   + SL LTETQVKIWF
Sbjct: 198 RTGSDSKSGKP-RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWF 256

Query: 90  QNRRAKAKR 98
           QNRR K K+
Sbjct: 257 QNRRTKWKK 265


>gi|390177112|ref|XP_003736279.1| GA30058 [Drosophila pseudoobscura pseudoobscura]
 gi|388858910|gb|EIM52352.1| GA30058 [Drosophila pseudoobscura pseudoobscura]
          Length = 591

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 47/103 (45%), Positives = 58/103 (56%), Gaps = 7/103 (6%)

Query: 3   DLPQLFLNEILILSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFRE 62
           D  +  + E      P  S S  GD    N + RK    +K RT F+  Q+  LE  F  
Sbjct: 434 DDGEEIIEEDDGTDGPSDSSSPHGDG---NGSKRK----KKTRTVFSRAQVFQLESTFDM 486

Query: 63  KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIE 105
           K+YLS +ERA  ++SL LTETQVKIWFQNRR K KR   AE+E
Sbjct: 487 KRYLSSSERAGLAASLRLTETQVKIWFQNRRNKWKRQLAAELE 529


>gi|358413579|ref|XP_003582602.1| PREDICTED: homeobox protein Nkx-2.6-like [Bos taurus]
          Length = 300

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/60 (56%), Positives = 46/60 (76%)

Query: 39  KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           +P RKPR  F+  Q+L+LE++F++++YLS  ER   +S+L LT TQVKIWFQNRR K KR
Sbjct: 131 RPRRKPRVLFSQAQVLALERRFKQQRYLSAPEREHLASALQLTSTQVKIWFQNRRYKCKR 190


>gi|348522809|ref|XP_003448916.1| PREDICTED: homeobox protein Hox-A10-like [Oreochromis niloticus]
          Length = 378

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/78 (51%), Positives = 47/78 (60%), Gaps = 1/78 (1%)

Query: 23  SNKGDPPKLNV-NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
           SNKGD    N  N    K  RK R P+T  Q L LEK+F    YL+   R E S S+HLT
Sbjct: 285 SNKGDTKSENTANWLTAKSGRKKRCPYTKHQTLELEKEFLFNMYLTRERRLEISKSVHLT 344

Query: 82  ETQVKIWFQNRRAKAKRL 99
           + QVKIWFQNRR K K++
Sbjct: 345 DRQVKIWFQNRRMKLKKM 362


>gi|193712547|ref|XP_001944887.1| PREDICTED: hypothetical protein LOC100167500 [Acyrthosiphon pisum]
          Length = 365

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 42/107 (39%), Positives = 62/107 (57%), Gaps = 2/107 (1%)

Query: 16  SSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           +S + S+ ++ D  + N      K  RK RT FT  QL +LEK F  ++YLS+ +R E +
Sbjct: 105 NSSVCSNGHRDDDGR-NSGSNLSKKQRKARTAFTDHQLQTLEKSFERQKYLSVQDRMELA 163

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYG 122
           + L+L++TQVK W+QNRR K KR     +E +  +   AA    LYG
Sbjct: 164 AKLNLSDTQVKTWYQNRRTKWKRQTAVGLELLAEAGNYAAFQR-LYG 209


>gi|95132377|gb|AAI16462.1| Unknown (protein for MGC:132388) [Xenopus laevis]
          Length = 274

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 55/73 (75%), Gaps = 2/73 (2%)

Query: 29  PKLNVNLRKHKPN--RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86
           P+  V +   KP   RKPRT +++ QL +L+++F++ QYL++ ERAE ++ L LT+TQVK
Sbjct: 115 PETEVRMVNGKPKKIRKPRTIYSSYQLAALQRRFQKAQYLALPERAELAAQLGLTQTQVK 174

Query: 87  IWFQNRRAKAKRL 99
           IWFQNRR+K K++
Sbjct: 175 IWFQNRRSKFKKI 187


>gi|6978765|ref|NP_037075.1| homeobox protein DLX-5 [Rattus norvegicus]
 gi|530164|gb|AAA42026.1| homeoprotein [Rattus norvegicus]
 gi|149064961|gb|EDM15037.1| distal-less homeobox 5, isoform CRA_a [Rattus norvegicus]
          Length = 289

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|47220252|emb|CAG03286.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 255

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 46/64 (71%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           +K RT F+  Q+  LE  F  K+YLS +ERA  +++LHLTETQVKIWFQNRR K KR   
Sbjct: 188 KKTRTVFSRSQVFQLESTFDVKRYLSSSERAGLAATLHLTETQVKIWFQNRRNKWKRQLA 247

Query: 102 AEIE 105
           A++E
Sbjct: 248 ADLE 251


>gi|332835312|ref|XP_521630.3| PREDICTED: NK1 transcription factor-related protein 2 [Pan
           troglodytes]
          Length = 310

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 164 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 220


>gi|297681012|ref|XP_002818279.1| PREDICTED: homeobox protein DLX-5 [Pongo abelii]
 gi|426357010|ref|XP_004045842.1| PREDICTED: homeobox protein DLX-5 [Gorilla gorilla gorilla]
          Length = 289

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|291411843|ref|XP_002722191.1| PREDICTED: NK1 homeobox 2-like [Oryctolagus cuniculus]
          Length = 304

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 157 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 213


>gi|291394759|ref|XP_002713830.1| PREDICTED: distal-less homeobox 5 [Oryctolagus cuniculus]
          Length = 289

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|226437602|ref|NP_001139812.1| NK1 transcription factor-related protein 2 [Homo sapiens]
 gi|338817978|sp|Q9UD57.3|NKX12_HUMAN RecName: Full=NK1 transcription factor-related protein 2; AltName:
           Full=Homeobox protein SAX-1; AltName: Full=NKX-1.1
 gi|119569655|gb|EAW49270.1| hCG1647663 [Homo sapiens]
          Length = 310

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
           R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 164 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 220


>gi|431908938|gb|ELK12529.1| Homeobox protein DLX-5 [Pteropus alecto]
          Length = 289

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


>gi|307201138|gb|EFN81049.1| BarH-like 2 homeobox protein [Harpegnathos saltator]
          Length = 199

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 34/72 (47%), Positives = 51/72 (70%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           R+ RT FT  QL  LE+KFR ++YLS+A+R++ + +L L+ETQVK W+QNRR K KR  +
Sbjct: 62  RRRRTAFTHAQLAYLERKFRCQKYLSVADRSDVADALSLSETQVKTWYQNRRTKWKRQNQ 121

Query: 102 AEIEKIKMSAIA 113
             +E+++  A  
Sbjct: 122 LRLEQLRHQATV 133


>gi|149253843|ref|XP_001473685.1| PREDICTED: NK1 transcription factor-related protein 1 [Mus
           musculus]
 gi|407261262|ref|XP_003946207.1| PREDICTED: NK1 transcription factor-related protein 1 [Mus
           musculus]
          Length = 402

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 36/69 (52%), Positives = 48/69 (69%), Gaps = 1/69 (1%)

Query: 30  KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89
           +   + +  KP R+ RT FT +QL++LE KF+  +YLS+ ER   + SL LTETQVKIWF
Sbjct: 240 RTGSDSKSGKP-RRARTAFTYEQLVALENKFKATRYLSVCERLNLALSLSLTETQVKIWF 298

Query: 90  QNRRAKAKR 98
           QNRR K K+
Sbjct: 299 QNRRTKWKK 307


>gi|426220881|ref|XP_004004640.1| PREDICTED: homeobox protein DLX-1 [Ovis aries]
          Length = 257

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/63 (55%), Positives = 51/63 (80%)

Query: 37  KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
           K K  RKPRT +++ QL +L ++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K 
Sbjct: 124 KGKKIRKPRTIYSSLQLQALNRRFQQTQYLALPERAELAASLGLTQTQVKIWFQNKRSKF 183

Query: 97  KRL 99
           K+L
Sbjct: 184 KKL 186


>gi|363735406|ref|XP_003641551.1| PREDICTED: homeobox protein SAX-1-like [Gallus gallus]
          Length = 169

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/57 (61%), Positives = 43/57 (75%)

Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
          R+ RT FT +QL++LE KFR  +YLS+ ER   + SL LTETQVKIWFQNRR K K+
Sbjct: 36 RRARTAFTYEQLVALENKFRATRYLSVCERLNLALSLSLTETQVKIWFQNRRTKWKK 92


>gi|148228898|ref|NP_001084032.1| homeobox protein DLL-4 [Xenopus laevis]
 gi|1708249|sp|P53775.1|DLL4_XENLA RecName: Full=Homeobox protein DLL-4; Short=XDLL-4
 gi|214106|gb|AAA02621.1| X-DLL4 [Xenopus laevis]
          Length = 285

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 40/87 (45%), Positives = 64/87 (73%), Gaps = 1/87 (1%)

Query: 17  SPLLSDSNKGDP-PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
           SP  +D  K D  P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE +
Sbjct: 102 SPPHNDQEKEDCEPEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELA 161

Query: 76  SSLHLTETQVKIWFQNRRAKAKRLQEA 102
           +SL +T+TQVKIWFQNRR+K K++ ++
Sbjct: 162 ASLGVTQTQVKIWFQNRRSKFKKMWKS 188


>gi|157113790|ref|XP_001657903.1| nk homeobox protein [Aedes aegypti]
 gi|108877578|gb|EAT41803.1| AAEL006597-PA [Aedes aegypti]
          Length = 431

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 53/140 (37%), Positives = 68/140 (48%), Gaps = 27/140 (19%)

Query: 42  RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
           ++ R  F+  Q+  LE++F +++YLS  ER+E + SL LTETQVKIWFQNRR K KR Q 
Sbjct: 200 KRSRAAFSHSQVFELERRFAQQRYLSGPERSELAKSLRLTETQVKIWFQNRRYKTKRKQI 259

Query: 102 AEIEKIKMSAI------AAARPHPLYGPGPSPHLHQYFQHASPEALLHHPHPFSAL---- 151
            + E   +SA          R    YGP                 L   PH  S L    
Sbjct: 260 QQHEAAILSATKRVPVQVLVREDGTYGPAA--------------MLAGQPHYASGLDPAL 305

Query: 152 --LGRHP-AMAHFMPAAPMP 168
             + RH   MA+ MP  PMP
Sbjct: 306 LNVYRHQIQMAYGMPVPPMP 325


>gi|449280409|gb|EMC87727.1| Homeobox protein DLX-5 [Columba livia]
          Length = 290

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/71 (49%), Positives = 56/71 (78%)

Query: 29  PKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIW 88
           P++ +   K K  RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIW
Sbjct: 125 PEVRMVNGKPKKVRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIW 184

Query: 89  FQNRRAKAKRL 99
           FQN+R+K K++
Sbjct: 185 FQNKRSKIKKI 195


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.316    0.131    0.393 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,409,197,136
Number of Sequences: 23463169
Number of extensions: 152253261
Number of successful extensions: 756522
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 18218
Number of HSP's successfully gapped in prelim test: 1605
Number of HSP's that attempted gapping in prelim test: 729442
Number of HSP's gapped (non-prelim): 27386
length of query: 192
length of database: 8,064,228,071
effective HSP length: 134
effective length of query: 58
effective length of database: 9,215,130,721
effective search space: 534477581818
effective search space used: 534477581818
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 72 (32.3 bits)