Query psy3429
Match_columns 192
No_of_seqs 200 out of 1230
Neff 7.1
Searched_HMMs 29240
Date Sat Aug 17 00:50:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3429.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3429hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dmt_A Homeobox protein BARH-l 99.9 2.7E-22 9.3E-27 140.1 8.7 63 37-99 13-75 (80)
2 1nk2_P Homeobox protein VND; h 99.9 7.1E-22 2.4E-26 137.0 9.9 65 37-101 5-69 (77)
3 2cue_A Paired box protein PAX6 99.9 7.2E-22 2.5E-26 137.9 10.0 66 38-103 4-69 (80)
4 2kt0_A Nanog, homeobox protein 99.9 4E-22 1.4E-26 140.3 8.4 64 37-100 18-81 (84)
5 2da3_A Alpha-fetoprotein enhan 99.9 5.3E-22 1.8E-26 138.3 8.3 62 38-99 14-75 (80)
6 2dmu_A Homeobox protein goosec 99.9 9.7E-22 3.3E-26 133.8 8.7 63 38-100 4-66 (70)
7 2h1k_A IPF-1, pancreatic and d 99.9 8E-22 2.7E-26 131.7 8.1 61 40-100 2-62 (63)
8 1puf_A HOX-1.7, homeobox prote 99.9 2.1E-21 7.3E-26 134.6 10.4 65 38-102 10-74 (77)
9 2dmq_A LIM/homeobox protein LH 99.9 1.5E-21 5E-26 136.2 9.6 64 38-101 4-67 (80)
10 1fjl_A Paired protein; DNA-bin 99.9 1.3E-21 4.3E-26 136.9 9.0 65 37-101 14-78 (81)
11 2cra_A Homeobox protein HOX-B1 99.9 5.8E-22 2E-26 135.0 6.7 62 38-99 4-65 (70)
12 2vi6_A Homeobox protein nanog; 99.9 2.3E-22 7.9E-27 133.8 4.5 60 40-99 2-61 (62)
13 2hdd_A Protein (engrailed home 99.9 7.9E-22 2.7E-26 130.8 7.1 58 41-98 3-60 (61)
14 2dms_A Homeobox protein OTX2; 99.9 9.6E-22 3.3E-26 137.2 7.7 63 38-100 4-66 (80)
15 1ig7_A Homeotic protein MSX-1; 99.9 1.7E-21 5.8E-26 127.8 8.3 57 42-98 1-57 (58)
16 3a01_A Homeodomain-containing 99.9 1.4E-21 4.7E-26 140.3 8.4 66 37-102 13-78 (93)
17 2da2_A Alpha-fetoprotein enhan 99.9 1.1E-21 3.9E-26 133.4 7.4 62 38-99 4-65 (70)
18 2e1o_A Homeobox protein PRH; D 99.9 3.1E-21 1E-25 131.4 9.2 62 39-100 5-66 (70)
19 1wh5_A ZF-HD homeobox family p 99.8 7.6E-22 2.6E-26 138.0 5.9 61 38-98 14-78 (80)
20 2da1_A Alpha-fetoprotein enhan 99.8 1.3E-21 4.6E-26 133.1 6.9 63 38-100 4-66 (70)
21 1zq3_P PRD-4, homeotic bicoid 99.8 3.4E-21 1.2E-25 130.5 8.5 61 41-101 2-62 (68)
22 2da4_A Hypothetical protein DK 99.8 1.4E-21 4.6E-26 136.5 6.7 62 38-99 5-70 (80)
23 1ahd_P Antennapedia protein mu 99.8 1.9E-21 6.6E-26 131.8 7.2 60 41-100 2-61 (68)
24 1b8i_A Ultrabithorax, protein 99.8 1.1E-21 3.7E-26 137.4 6.1 63 38-100 17-79 (81)
25 2djn_A Homeobox protein DLX-5; 99.8 1.1E-21 3.7E-26 133.7 5.9 62 38-99 4-65 (70)
26 1yz8_P Pituitary homeobox 2; D 99.8 8.8E-22 3E-26 133.4 5.1 62 40-101 2-63 (68)
27 1ftt_A TTF-1 HD, thyroid trans 99.8 3.9E-21 1.3E-25 130.2 8.1 61 40-100 1-61 (68)
28 1akh_A Protein (mating-type pr 99.8 1.6E-21 5.6E-26 129.2 6.1 60 38-97 2-61 (61)
29 1jgg_A Segmentation protein EV 99.8 4.3E-21 1.5E-25 126.8 8.0 58 42-99 2-59 (60)
30 2l7z_A Homeobox protein HOX-A1 99.8 4E-21 1.4E-25 132.0 7.7 63 38-100 4-66 (73)
31 1bw5_A ISL-1HD, insulin gene e 99.8 2.3E-21 8E-26 130.5 6.2 60 40-99 2-61 (66)
32 2r5y_A Homeotic protein sex co 99.8 4.7E-21 1.6E-25 136.0 8.0 62 38-99 25-86 (88)
33 2m0c_A Homeobox protein arista 99.8 5E-21 1.7E-25 131.6 7.6 64 37-100 5-68 (75)
34 1wh7_A ZF-HD homeobox family p 99.8 1.5E-21 5.2E-26 136.5 4.8 60 38-98 14-78 (80)
35 3rkq_A Homeobox protein NKX-2. 99.8 5.8E-21 2E-25 124.9 7.0 57 41-97 2-58 (58)
36 1uhs_A HOP, homeodomain only p 99.8 1.3E-20 4.6E-25 128.9 8.4 59 42-100 2-61 (72)
37 2ecc_A Homeobox and leucine zi 99.8 1.2E-20 4E-25 130.5 8.1 58 43-100 5-62 (76)
38 2hi3_A Homeodomain-only protei 99.8 1.5E-20 5.3E-25 128.9 8.6 59 42-100 3-62 (73)
39 3a02_A Homeobox protein arista 99.8 6.4E-21 2.2E-25 126.0 6.4 58 44-101 2-59 (60)
40 2cuf_A FLJ21616 protein; homeo 99.8 1.5E-20 5.2E-25 135.3 8.8 64 38-101 4-82 (95)
41 2k40_A Homeobox expressed in E 99.8 1E-20 3.4E-25 127.7 7.1 60 41-100 1-60 (67)
42 3nar_A ZHX1, zinc fingers and 99.8 7.4E-21 2.5E-25 137.2 6.5 65 38-102 22-86 (96)
43 1b72_A Protein (homeobox prote 99.8 1.2E-20 4.3E-25 136.2 7.5 63 39-101 32-94 (97)
44 3a03_A T-cell leukemia homeobo 99.8 1.7E-20 5.7E-25 122.4 7.3 54 46-99 2-55 (56)
45 2da6_A Hepatocyte nuclear fact 99.8 4E-20 1.4E-24 134.4 9.6 66 37-102 2-88 (102)
46 1x2n_A Homeobox protein pknox1 99.8 4.6E-20 1.6E-24 126.4 8.7 63 38-100 4-69 (73)
47 2ly9_A Zinc fingers and homeob 99.8 2.9E-20 9.8E-25 127.7 5.8 59 42-100 7-65 (74)
48 1b72_B Protein (PBX1); homeodo 99.8 5.3E-20 1.8E-24 130.1 6.7 61 42-102 2-65 (87)
49 1puf_B PRE-B-cell leukemia tra 99.8 1.1E-19 3.8E-24 124.5 8.0 60 42-101 2-64 (73)
50 2dn0_A Zinc fingers and homeob 99.8 5.3E-20 1.8E-24 127.2 6.2 59 42-100 9-67 (76)
51 2da5_A Zinc fingers and homeob 99.8 1.1E-19 3.8E-24 125.4 7.7 58 43-100 9-66 (75)
52 2dmn_A Homeobox protein TGIF2L 99.8 1.8E-19 6.1E-24 126.7 8.7 63 38-100 4-69 (83)
53 1wi3_A DNA-binding protein SAT 99.8 1.6E-19 5.6E-24 121.2 7.9 58 38-95 4-62 (71)
54 1lfb_A Liver transcription fac 99.8 2.7E-20 9.4E-25 135.1 3.7 68 35-102 3-91 (99)
55 1du6_A PBX1, homeobox protein 99.8 3.4E-20 1.2E-24 124.0 3.8 58 41-98 3-63 (64)
56 1k61_A Mating-type protein alp 99.8 1.7E-19 5.7E-24 119.1 7.0 55 44-98 1-58 (60)
57 1mnm_C Protein (MAT alpha-2 tr 99.8 9.1E-20 3.1E-24 129.1 5.9 59 39-97 25-86 (87)
58 2xsd_C POU domain, class 3, tr 99.8 8.7E-20 3E-24 143.6 6.1 65 36-100 94-158 (164)
59 1e3o_C Octamer-binding transcr 99.8 1.2E-19 4.2E-24 142.1 6.5 62 38-99 98-159 (160)
60 2ecb_A Zinc fingers and homeob 99.8 2.7E-19 9.3E-24 127.4 7.4 54 47-100 17-70 (89)
61 2cqx_A LAG1 longevity assuranc 99.8 8.3E-20 2.8E-24 125.2 4.2 57 42-98 9-66 (72)
62 1au7_A Protein PIT-1, GHF-1; c 99.8 2E-19 7E-24 139.0 6.6 64 36-99 82-145 (146)
63 3d1n_I POU domain, class 6, tr 99.8 3.4E-19 1.2E-23 138.3 7.6 61 38-98 90-150 (151)
64 3nau_A Zinc fingers and homeob 99.8 4.7E-19 1.6E-23 118.9 7.2 53 48-100 11-63 (66)
65 1le8_B Mating-type protein alp 99.8 4E-19 1.4E-23 124.8 6.8 59 42-100 3-64 (83)
66 2dmp_A Zinc fingers and homeob 99.8 1.2E-18 4.2E-23 124.0 9.0 54 47-100 19-72 (89)
67 3l1p_A POU domain, class 5, tr 99.7 1.1E-18 3.8E-23 136.0 6.3 61 39-99 94-154 (155)
68 2e19_A Transcription factor 8; 99.7 1.1E-18 3.9E-23 116.9 4.7 54 45-98 7-60 (64)
69 2l9r_A Homeobox protein NKX-3. 99.7 1.7E-18 5.7E-23 117.8 5.4 55 46-100 9-63 (69)
70 1x2m_A LAG1 longevity assuranc 99.7 1.2E-18 4E-23 116.7 4.0 49 50-98 9-58 (64)
71 2d5v_A Hepatocyte nuclear fact 99.7 2.1E-18 7.2E-23 135.4 5.1 64 37-100 93-156 (164)
72 3k2a_A Homeobox protein MEIS2; 99.7 4.3E-17 1.5E-21 110.1 6.3 56 46-101 3-61 (67)
73 1ic8_A Hepatocyte nuclear fact 99.7 1.6E-17 5.6E-22 133.7 4.0 62 37-98 111-193 (194)
74 2h8r_A Hepatocyte nuclear fact 99.6 6.9E-16 2.4E-20 126.0 6.2 62 35-96 136-218 (221)
75 2lk2_A Homeobox protein TGIF1; 99.6 2.6E-15 9E-20 106.4 8.0 56 46-101 10-68 (89)
76 2da7_A Zinc finger homeobox pr 99.6 3.9E-15 1.3E-19 100.5 6.5 46 50-95 14-59 (71)
77 1mh3_A Maltose binding-A1 home 99.4 1.4E-14 4.7E-19 126.2 1.9 57 41-97 365-421 (421)
78 2nzz_A Penetratin conjugated G 98.7 6.6E-10 2.2E-14 66.0 -2.0 20 83-102 1-20 (37)
79 2ys9_A Homeobox and leucine zi 96.7 0.0021 7.1E-08 42.9 4.4 39 53-91 18-56 (70)
80 2glo_A Brinker CG9653-PA; prot 91.6 0.44 1.5E-05 29.7 5.4 46 45-91 3-48 (59)
81 2elh_A CG11849-PA, LD40883P; s 91.4 1.4 4.8E-05 29.6 8.2 47 39-90 14-60 (87)
82 1hlv_A CENP-B, major centromer 91.0 0.67 2.3E-05 33.2 6.6 49 44-95 4-52 (131)
83 3hug_A RNA polymerase sigma fa 90.9 0.68 2.3E-05 31.3 6.2 49 47-100 37-85 (92)
84 1je8_A Nitrate/nitrite respons 86.1 1 3.5E-05 29.9 4.3 50 46-101 20-69 (82)
85 1p4w_A RCSB; solution structur 85.4 1.3 4.5E-05 30.8 4.8 48 45-98 32-79 (99)
86 2o8x_A Probable RNA polymerase 85.3 0.99 3.4E-05 28.3 3.8 48 47-99 15-62 (70)
87 3c57_A Two component transcrip 84.3 1.5 5.3E-05 29.9 4.7 47 46-98 26-72 (95)
88 3mzy_A RNA polymerase sigma-H 84.2 3 0.0001 30.0 6.6 49 47-101 109-157 (164)
89 1fse_A GERE; helix-turn-helix 82.5 2.7 9.1E-05 26.5 5.1 49 45-99 9-57 (74)
90 1tc3_C Protein (TC3 transposas 81.9 3.1 0.00011 23.5 4.9 40 47-91 5-44 (51)
91 1jko_C HIN recombinase, DNA-in 81.1 0.89 3.1E-05 26.5 2.2 42 47-93 5-46 (52)
92 1ku3_A Sigma factor SIGA; heli 80.7 4.3 0.00015 25.9 5.6 50 47-97 10-59 (73)
93 1fi6_A EH domain protein REPS1 80.6 2.5 8.4E-05 28.3 4.5 45 46-90 1-50 (92)
94 1x3u_A Transcriptional regulat 80.0 2 7E-05 27.6 3.8 48 48-101 17-64 (79)
95 1s7o_A Hypothetical UPF0122 pr 79.3 4.3 0.00015 28.8 5.7 49 47-100 22-70 (113)
96 1rp3_A RNA polymerase sigma fa 78.8 2.3 7.8E-05 32.8 4.5 49 47-100 187-235 (239)
97 3ulq_B Transcriptional regulat 78.6 5 0.00017 27.2 5.6 49 43-97 25-73 (90)
98 2p7v_B Sigma-70, RNA polymeras 78.5 3 0.0001 26.3 4.2 51 47-98 5-55 (68)
99 2lv7_A Calcium-binding protein 76.9 4.3 0.00015 27.8 4.9 48 43-90 25-79 (100)
100 2rnj_A Response regulator prot 76.7 1.5 5E-05 29.6 2.4 48 46-99 28-75 (91)
101 1c07_A Protein (epidermal grow 76.6 3.6 0.00012 27.6 4.4 45 46-90 2-51 (95)
102 1xsv_A Hypothetical UPF0122 pr 76.1 7.7 0.00026 27.3 6.2 48 48-100 26-73 (113)
103 2jn6_A Protein CGL2762, transp 75.2 6.1 0.00021 26.6 5.3 43 45-91 3-46 (97)
104 2rgt_A Fusion of LIM/homeobox 75.0 0.036 1.2E-06 42.5 -7.0 30 39-68 134-163 (169)
105 1or7_A Sigma-24, RNA polymeras 73.1 5.2 0.00018 29.8 5.0 48 48-100 141-188 (194)
106 1tty_A Sigma-A, RNA polymerase 72.4 5.4 0.00019 26.5 4.4 52 47-99 18-69 (87)
107 2pmy_A RAS and EF-hand domain- 72.2 3.8 0.00013 27.0 3.6 45 46-90 19-68 (91)
108 3t72_q RNA polymerase sigma fa 72.0 14 0.00049 25.5 6.7 54 47-101 19-72 (99)
109 3i5g_B Myosin regulatory light 70.3 13 0.00045 26.9 6.6 39 44-82 6-49 (153)
110 2rn7_A IS629 ORFA; helix, all 67.0 15 0.00052 24.9 6.0 46 45-90 4-52 (108)
111 1j7q_A CAVP, calcium vector pr 66.4 19 0.00064 22.8 6.1 46 45-90 5-60 (86)
112 2jpc_A SSRB; DNA binding prote 66.3 4.8 0.00016 24.4 2.9 43 52-100 3-45 (61)
113 1iuf_A Centromere ABP1 protein 65.8 6.7 0.00023 28.7 4.1 51 42-92 6-60 (144)
114 2q0o_A Probable transcriptiona 65.7 9.8 0.00034 29.8 5.3 50 45-100 173-222 (236)
115 3clo_A Transcriptional regulat 65.5 7.8 0.00027 30.9 4.7 52 46-103 196-247 (258)
116 1l3l_A Transcriptional activat 62.3 14 0.00047 28.9 5.6 49 45-99 171-219 (234)
117 2qko_A Possible transcriptiona 61.3 3.1 0.00011 31.3 1.5 44 53-97 34-77 (215)
118 1eh2_A EPS15; calcium binding, 61.0 21 0.0007 24.7 5.7 46 45-90 6-55 (106)
119 2x48_A CAG38821; archeal virus 60.5 10 0.00035 22.4 3.6 36 50-90 18-53 (55)
120 2q1z_A RPOE, ECF SIGE; ECF sig 60.0 3.4 0.00012 30.6 1.5 27 72-98 155-181 (184)
121 2ktg_A Calmodulin, putative; e 59.8 20 0.00068 22.5 5.2 46 45-90 5-57 (85)
122 1irz_A ARR10-B; helix-turn-hel 59.0 33 0.0011 22.0 6.6 57 42-98 4-62 (64)
123 2q24_A Putative TETR family tr 57.6 6.4 0.00022 28.9 2.7 43 53-97 21-63 (194)
124 3qp6_A CVIR transcriptional re 57.0 31 0.001 27.7 6.9 52 45-102 195-246 (265)
125 2k27_A Paired box protein PAX- 56.9 32 0.0011 24.9 6.5 46 45-90 81-133 (159)
126 2opo_A Polcalcin CHE A 3; calc 56.7 17 0.00057 23.0 4.4 45 46-90 3-53 (86)
127 3lph_A Protein REV; helix-loop 56.6 7.8 0.00027 25.6 2.6 36 53-102 18-53 (72)
128 2kgr_A Intersectin-1; structur 56.4 17 0.00059 25.0 4.7 46 45-90 5-55 (111)
129 2cqr_A RSGI RUH-043, DNAJ homo 56.0 39 0.0013 22.0 8.1 50 42-91 15-65 (73)
130 1iq3_A Ralbp1-interacting prot 55.7 7 0.00024 27.3 2.5 47 44-90 12-63 (110)
131 3bni_A Putative TETR-family tr 55.0 3.7 0.00013 31.4 1.0 41 56-97 52-92 (229)
132 2lfw_A PHYR sigma-like domain; 53.9 10 0.00034 27.7 3.2 48 46-98 92-139 (157)
133 1u78_A TC3 transposase, transp 52.7 22 0.00077 24.8 4.9 41 46-91 5-45 (141)
134 1avs_A Troponin C; muscle cont 51.9 22 0.00074 22.7 4.4 44 47-90 13-63 (90)
135 1pdn_C Protein (PRD paired); p 51.8 28 0.00095 23.6 5.2 46 46-91 74-126 (128)
136 1dtl_A Cardiac troponin C; hel 51.8 26 0.00089 24.4 5.2 47 44-90 8-62 (161)
137 3bd1_A CRO protein; transcript 51.8 6.9 0.00024 25.1 1.8 23 71-93 14-36 (79)
138 2ovk_B RLC, myosin regulatory 51.7 37 0.0013 23.6 6.0 47 44-90 6-59 (153)
139 2xi8_A Putative transcription 51.6 6.2 0.00021 23.8 1.5 23 71-93 17-39 (66)
140 2bnk_A Early protein GP16.7; D 50.8 45 0.0015 21.1 5.9 52 48-99 5-56 (67)
141 3qrx_A Centrin; calcium-bindin 50.5 31 0.001 24.3 5.4 49 41-89 15-70 (169)
142 3c3w_A Two component transcrip 50.4 16 0.00055 27.8 4.0 46 46-97 148-193 (225)
143 2r1j_L Repressor protein C2; p 50.3 6.9 0.00023 23.7 1.5 23 71-93 21-43 (68)
144 3szt_A QCSR, quorum-sensing co 50.3 31 0.0011 27.0 5.8 46 46-97 174-219 (237)
145 1k78_A Paired box protein PAX5 49.9 61 0.0021 22.9 7.0 48 45-92 88-142 (149)
146 3fwb_A Cell division control p 49.8 39 0.0013 23.4 5.9 49 42-90 11-66 (161)
147 3fmy_A HTH-type transcriptiona 49.7 12 0.00042 23.7 2.7 42 45-93 8-49 (73)
148 1u78_A TC3 transposase, transp 49.6 33 0.0011 23.8 5.4 44 47-94 60-105 (141)
149 2x7l_M HIV REV; nuclear export 49.4 5.1 0.00017 28.8 0.8 35 54-102 16-50 (115)
150 2joj_A Centrin protein; N-term 48.5 17 0.00058 22.3 3.3 43 48-90 1-50 (77)
151 2cqq_A RSGI RUH-037, DNAJ homo 48.1 49 0.0017 21.4 5.6 42 45-87 8-50 (72)
152 3fiw_A Putative TETR-family tr 48.0 10 0.00034 29.0 2.5 56 42-98 19-75 (211)
153 1zug_A Phage 434 CRO protein; 47.8 7.4 0.00025 23.9 1.4 24 71-94 19-42 (71)
154 3bs3_A Putative DNA-binding pr 47.3 8 0.00027 24.1 1.5 23 71-93 26-48 (76)
155 1pdn_C Protein (PRD paired); p 46.1 41 0.0014 22.7 5.3 40 47-91 17-56 (128)
156 2lhi_A Calmodulin, serine/thre 46.1 15 0.00053 27.2 3.2 44 45-88 2-52 (176)
157 1adr_A P22 C2 repressor; trans 45.4 9 0.00031 23.8 1.5 24 71-94 21-44 (76)
158 1a04_A Nitrate/nitrite respons 45.3 28 0.00097 25.9 4.7 47 46-98 153-199 (215)
159 3omt_A Uncharacterized protein 45.2 9.6 0.00033 23.8 1.7 23 71-93 24-46 (73)
160 2ofy_A Putative XRE-family tra 45.0 23 0.00079 22.6 3.6 23 71-93 30-52 (86)
161 2k27_A Paired box protein PAX- 44.2 52 0.0018 23.7 5.9 41 46-91 24-64 (159)
162 3g1o_A Transcriptional regulat 44.0 36 0.0012 26.0 5.2 46 53-99 49-94 (255)
163 2hin_A GP39, repressor protein 43.6 14 0.00047 24.1 2.2 28 71-98 13-40 (71)
164 1r69_A Repressor protein CI; g 43.6 9.7 0.00033 23.1 1.5 24 71-94 17-40 (69)
165 3kz3_A Repressor protein CI; f 43.3 11 0.00037 24.1 1.7 24 71-94 28-51 (80)
166 2b5a_A C.BCLI; helix-turn-heli 42.7 10 0.00034 23.7 1.4 23 71-93 26-48 (77)
167 3kz9_A SMCR; transcriptional r 41.8 22 0.00076 25.7 3.5 43 55-98 25-67 (206)
168 3q0w_A HTH-type transcriptiona 41.5 37 0.0013 25.6 4.9 44 55-99 52-95 (236)
169 2hxi_A Putative transcriptiona 41.5 20 0.00068 28.0 3.3 52 44-96 25-77 (241)
170 3u0k_A Rcamp; fluorescent prot 41.3 31 0.001 30.5 4.7 48 43-90 291-345 (440)
171 2mys_C Myosin; muscle protein, 41.2 51 0.0017 22.3 5.2 43 48-90 2-51 (149)
172 1l0o_C Sigma factor; bergerat 41.1 5.7 0.00019 30.4 0.0 44 47-95 198-241 (243)
173 1y7y_A C.AHDI; helix-turn-heli 41.1 11 0.00038 23.2 1.4 23 71-93 29-51 (74)
174 2wiu_B HTH-type transcriptiona 40.9 15 0.00053 23.5 2.2 23 71-93 28-50 (88)
175 1k78_A Paired box protein PAX5 40.6 54 0.0019 23.2 5.4 41 46-91 31-71 (149)
176 2kpj_A SOS-response transcript 40.5 11 0.00038 24.9 1.4 23 71-93 25-47 (94)
177 2a6c_A Helix-turn-helix motif; 40.4 13 0.00044 24.0 1.7 23 71-93 34-56 (83)
178 3j04_B Myosin regulatory light 40.2 50 0.0017 22.4 5.1 44 48-91 1-51 (143)
179 2qwt_A Transcriptional regulat 39.6 20 0.0007 26.3 3.0 38 56-95 22-59 (196)
180 2mys_B Myosin; muscle protein, 39.5 55 0.0019 23.0 5.3 45 47-91 18-70 (166)
181 3dtp_E RLC, myosin regulatory 38.5 1.1E+02 0.0039 22.3 8.1 46 45-90 48-100 (196)
182 3b7h_A Prophage LP1 protein 11 38.3 13 0.00043 23.3 1.4 23 71-93 23-45 (78)
183 2kn2_A Calmodulin; S MAPK phos 38.1 48 0.0016 20.9 4.4 42 49-90 4-52 (92)
184 3bdn_A Lambda repressor; repre 37.7 15 0.00052 28.4 2.1 24 70-93 32-55 (236)
185 1wdc_B Scallop myosin; calcium 37.1 65 0.0022 22.3 5.3 46 46-91 10-62 (156)
186 2gqb_A Conserved hypothetical 36.9 41 0.0014 24.6 4.0 27 65-91 80-111 (130)
187 2ict_A Antitoxin HIGA; helix-t 36.6 16 0.00054 24.0 1.7 23 71-93 24-46 (94)
188 2k9q_A Uncharacterized protein 36.5 14 0.00047 23.3 1.3 23 71-93 18-40 (77)
189 2fq4_A Transcriptional regulat 35.8 24 0.00083 25.7 2.9 39 56-95 21-59 (192)
190 2ef8_A C.ECOT38IS, putative tr 35.5 16 0.00053 23.2 1.5 23 71-93 26-48 (84)
191 3i5g_C Myosin catalytic light 35.2 24 0.00082 25.6 2.7 42 47-88 2-52 (159)
192 3dcf_A Transcriptional regulat 35.2 16 0.00055 26.8 1.7 45 53-98 37-81 (218)
193 1rzs_A Antirepressor, regulato 35.1 18 0.00061 22.3 1.7 19 71-89 13-31 (61)
194 2rae_A Transcriptional regulat 35.0 26 0.00088 25.6 2.9 40 53-93 23-62 (207)
195 1ity_A TRF1; helix-turn-helix, 34.9 84 0.0029 19.7 6.2 49 38-89 3-54 (69)
196 3f6w_A XRE-family like protein 34.4 17 0.00057 23.1 1.5 23 71-93 30-52 (83)
197 2g7g_A RHA04620, putative tran 34.3 20 0.0007 27.2 2.3 48 46-96 9-57 (213)
198 1yio_A Response regulatory pro 34.2 41 0.0014 24.8 3.9 44 48-97 143-186 (208)
199 2a6h_F RNA polymerase sigma fa 34.0 74 0.0025 27.4 6.1 50 47-97 360-409 (423)
200 3o9x_A Uncharacterized HTH-typ 34.0 24 0.00084 24.8 2.5 23 71-93 87-109 (133)
201 2pjp_A Selenocysteine-specific 33.6 33 0.0011 24.0 3.2 43 48-91 1-43 (121)
202 1l9z_H Sigma factor SIGA; heli 33.5 71 0.0024 27.9 5.9 51 47-98 375-425 (438)
203 2g7l_A TETR-family transcripti 33.4 31 0.0011 26.9 3.2 53 42-95 13-66 (243)
204 2qtq_A Transcriptional regulat 33.4 33 0.0011 24.9 3.3 46 53-99 22-67 (213)
205 3lsg_A Two-component response 33.4 39 0.0013 22.5 3.4 24 69-92 20-43 (103)
206 3vib_A MTRR; helix-turn-helix 33.0 27 0.00093 25.7 2.7 40 56-96 19-58 (210)
207 2hku_A A putative transcriptio 32.9 23 0.00077 26.3 2.3 43 54-98 27-69 (215)
208 3jsj_A Putative TETR-family tr 32.5 24 0.0008 25.5 2.3 46 53-100 15-60 (190)
209 1lmb_3 Protein (lambda repress 32.5 19 0.00063 23.4 1.5 23 71-93 33-55 (92)
210 1qjt_A EH1, epidermal growth f 32.5 28 0.00096 23.4 2.5 38 53-90 10-52 (99)
211 2jml_A DNA binding domain/tran 32.3 28 0.00096 22.6 2.4 20 71-90 8-27 (81)
212 1exr_A Calmodulin; high resolu 32.2 71 0.0024 21.9 4.8 43 47-89 3-52 (148)
213 3g7r_A Putative transcriptiona 32.0 23 0.0008 26.5 2.2 44 54-98 42-85 (221)
214 3fia_A Intersectin-1; EH 1 dom 32.0 94 0.0032 22.2 5.4 46 43-88 22-72 (121)
215 1j9i_A GPNU1 DBD;, terminase s 32.0 28 0.00097 21.7 2.3 21 71-91 5-25 (68)
216 1x57_A Endothelial differentia 31.9 21 0.0007 23.3 1.7 23 71-93 29-51 (91)
217 3ox6_A Calcium-binding protein 31.4 1.2E+02 0.0041 20.4 6.1 44 46-89 3-53 (153)
218 4ds7_A Calmodulin, CAM; protei 31.3 74 0.0025 21.4 4.7 44 46-89 3-53 (147)
219 2iai_A Putative transcriptiona 31.1 38 0.0013 25.5 3.3 46 52-98 35-80 (230)
220 2rek_A Putative TETR-family tr 30.8 20 0.00067 26.2 1.6 43 53-97 22-64 (199)
221 3t76_A VANU, transcriptional r 30.6 19 0.00066 24.0 1.4 23 71-93 40-62 (88)
222 2wui_A MEXZ, transcriptional r 30.5 45 0.0015 24.6 3.6 40 57-97 21-60 (210)
223 2kz5_A Transcription factor NF 29.7 1.1E+02 0.0039 20.8 5.1 33 65-97 42-75 (91)
224 3qq6_A HTH-type transcriptiona 29.7 21 0.00071 22.8 1.4 21 71-91 26-46 (78)
225 3s8q_A R-M controller protein; 29.6 21 0.00071 22.6 1.4 23 71-93 27-49 (82)
226 2ewt_A BLDD, putative DNA-bind 29.3 27 0.00092 21.2 1.8 23 71-93 24-48 (71)
227 2v79_A DNA replication protein 29.2 1.5E+02 0.005 21.3 6.1 43 48-93 30-76 (135)
228 2l49_A C protein; P2 bacteriop 28.9 21 0.00073 23.4 1.4 23 71-93 20-42 (99)
229 2zcx_A SCO7815, TETR-family tr 28.7 72 0.0025 24.1 4.6 46 54-100 30-75 (231)
230 2jrt_A Uncharacterized protein 28.4 78 0.0027 21.6 4.2 41 45-90 30-71 (95)
231 2hxo_A Putative TETR-family tr 28.4 31 0.001 26.8 2.4 56 42-98 10-66 (237)
232 3gyk_A 27KDA outer membrane pr 28.1 1.6E+02 0.0056 20.9 7.3 44 53-96 85-128 (175)
233 3rd3_A Probable transcriptiona 28.1 22 0.00074 25.6 1.4 45 53-98 16-60 (197)
234 1s6c_A KV4 potassium channel-i 28.0 1E+02 0.0034 21.9 5.2 45 46-90 13-63 (183)
235 3bru_A Regulatory protein, TET 27.9 42 0.0014 24.6 3.0 44 53-97 36-79 (222)
236 3osg_A MYB21; transcription-DN 27.8 1.2E+02 0.0041 21.3 5.4 46 42-91 8-54 (126)
237 1y66_A Engrailed homeodomain; 27.6 18 0.0006 21.5 0.6 38 54-91 10-47 (52)
238 2lmt_A Calmodulin-related prot 27.2 40 0.0014 23.6 2.7 43 47-89 3-52 (148)
239 3op9_A PLI0006 protein; struct 26.7 29 0.00098 23.6 1.7 23 71-93 25-47 (114)
240 1etf_B REV peptide; complex (R 26.4 47 0.0016 17.5 2.1 12 90-101 7-18 (26)
241 2din_A Cell division cycle 5-l 26.4 1.2E+02 0.004 18.7 6.4 46 44-93 8-53 (66)
242 2pij_A Prophage PFL 6 CRO; tra 26.4 32 0.0011 20.8 1.8 20 71-90 16-35 (67)
243 2i10_A Putative TETR transcrip 26.4 61 0.0021 23.7 3.7 44 53-97 17-60 (202)
244 3kkd_A Transcriptional regulat 26.2 18 0.00062 27.4 0.6 42 55-97 43-84 (237)
245 3mse_B Calcium-dependent prote 26.2 75 0.0026 22.9 4.2 41 50-90 35-80 (180)
246 3f1b_A TETR-like transcription 26.2 20 0.00067 26.0 0.8 45 55-100 22-66 (203)
247 3ppb_A Putative TETR family tr 26.2 39 0.0013 24.0 2.5 46 53-99 15-60 (195)
248 3f0c_A TETR-molecule A, transc 26.2 34 0.0012 25.0 2.2 45 53-98 17-61 (216)
249 1t33_A Putative transcriptiona 26.1 31 0.0011 25.5 2.0 43 54-98 19-61 (224)
250 3he0_A Transcriptional regulat 25.9 38 0.0013 24.3 2.4 48 52-100 16-63 (196)
251 2pz9_A Putative regulatory pro 25.8 16 0.00053 27.6 0.2 46 53-99 36-81 (226)
252 2ppx_A AGR_C_3184P, uncharacte 25.7 28 0.00096 23.2 1.5 23 71-93 46-68 (99)
253 1qv0_A Obelin, OBL; photoprote 25.7 1.4E+02 0.0047 21.3 5.6 38 45-82 10-58 (195)
254 2yus_A SWI/SNF-related matrix- 25.7 1.4E+02 0.0049 19.4 5.3 48 39-90 12-60 (79)
255 2jnf_A Troponin C; stretch act 25.3 1.2E+02 0.0041 20.7 5.0 45 46-90 5-57 (158)
256 2np5_A Transcriptional regulat 25.2 24 0.00082 26.0 1.2 45 53-98 15-59 (203)
257 3dew_A Transcriptional regulat 25.2 25 0.00087 25.3 1.3 45 53-98 14-58 (206)
258 1aih_A HP1 integrase; DNA inte 25.1 1.6E+02 0.0055 20.8 5.8 43 43-85 2-44 (170)
259 3klo_A Transcriptional regulat 25.1 36 0.0012 25.7 2.2 45 47-97 159-203 (225)
260 2v57_A TETR family transcripti 25.0 20 0.0007 25.8 0.7 40 57-99 24-63 (190)
261 2oer_A Probable transcriptiona 24.9 47 0.0016 24.6 2.8 44 53-97 27-73 (214)
262 1uxc_A FRUR (1-57), fructose r 24.9 37 0.0013 21.4 1.9 23 71-93 3-25 (65)
263 2ao9_A Phage protein; structur 24.5 58 0.002 24.5 3.2 47 45-91 21-71 (155)
264 2gwr_A DNA-binding response re 24.3 1.3E+02 0.0046 22.5 5.5 48 46-95 152-204 (238)
265 3i9v_2 NADH-quinone oxidoreduc 24.1 89 0.003 23.8 4.3 37 50-86 25-61 (181)
266 1p2f_A Response regulator; DRR 23.7 1.2E+02 0.0042 22.3 5.1 49 46-96 144-195 (220)
267 2aao_A CDPK, calcium-dependent 23.7 1.5E+02 0.005 20.5 5.2 44 47-90 20-70 (166)
268 2oi8_A Putative regulatory pro 23.6 22 0.00075 26.9 0.7 43 54-97 23-65 (216)
269 1qgp_A Protein (double strande 23.6 36 0.0012 22.1 1.7 32 58-89 21-52 (77)
270 1dgu_A Calcium-saturated CIB; 23.5 1.3E+02 0.0043 21.5 5.0 36 44-80 10-58 (183)
271 3mlf_A Transcriptional regulat 23.4 36 0.0012 23.4 1.7 23 71-93 39-61 (111)
272 3eus_A DNA-binding protein; st 23.3 36 0.0012 22.0 1.7 23 71-93 30-52 (86)
273 3nxc_A HTH-type protein SLMA; 23.3 44 0.0015 24.2 2.4 37 59-96 37-73 (212)
274 3cwr_A Transcriptional regulat 23.0 41 0.0014 24.2 2.1 40 56-96 26-65 (208)
275 2fjr_A Repressor protein CI; g 22.7 59 0.002 24.0 3.0 25 70-94 22-46 (189)
276 3lwj_A Putative TETR-family tr 22.5 22 0.00074 25.8 0.4 44 54-98 19-62 (202)
277 1a4p_A S100A10; S100 family, E 22.3 1.5E+02 0.0053 19.3 4.9 40 51-90 6-56 (96)
278 3g5g_A Regulatory protein; tra 22.3 35 0.0012 23.0 1.4 23 71-93 44-66 (99)
279 2guh_A Putative TETR-family tr 22.2 39 0.0013 25.3 1.9 43 54-97 46-88 (214)
280 3npi_A TETR family regulatory 22.1 24 0.00082 27.0 0.6 44 53-97 24-67 (251)
281 2zcm_A Biofilm operon icaabcd 22.0 62 0.0021 23.2 2.9 45 53-98 13-57 (192)
282 3vk0_A NHTF, transcriptional r 22.0 32 0.0011 23.5 1.2 23 71-93 37-59 (114)
283 3bqz_B HTH-type transcriptiona 21.8 64 0.0022 22.9 3.0 45 53-98 8-52 (194)
284 1neq_A DNA-binding protein NER 21.8 44 0.0015 21.4 1.8 21 71-91 25-45 (74)
285 3ccy_A Putative TETR-family tr 21.5 32 0.0011 25.1 1.2 44 53-97 20-63 (203)
286 2iw5_B Protein corest, REST co 21.4 2.5E+02 0.0086 22.5 6.5 52 40-95 128-180 (235)
287 3ivp_A Putative transposon-rel 21.4 37 0.0013 23.5 1.5 23 71-93 28-50 (126)
288 3v6g_A Probable transcriptiona 21.3 47 0.0016 24.8 2.2 42 54-96 21-62 (208)
289 3f52_A CLP gene regulator (CLG 21.1 41 0.0014 22.8 1.7 23 71-93 44-66 (117)
290 3lfp_A CSP231I C protein; tran 21.0 46 0.0016 21.9 1.9 23 71-93 17-43 (98)
291 2llk_A Cyclin-D-binding MYB-li 20.9 1.8E+02 0.0061 18.8 5.6 42 44-89 22-63 (73)
292 2jvl_A TRMBF1; coactivator, he 20.9 36 0.0012 23.2 1.3 23 71-93 52-74 (107)
293 3cec_A Putative antidote prote 20.8 40 0.0014 22.4 1.5 23 71-93 34-56 (104)
294 1fpw_A Yeast frequenin, calciu 20.8 1.8E+02 0.0061 20.6 5.4 46 45-90 19-70 (190)
295 3mn2_A Probable ARAC family tr 20.8 99 0.0034 20.5 3.6 24 69-92 19-42 (108)
296 2f2o_A Calmodulin fused with c 20.7 1.3E+02 0.0043 21.2 4.4 43 47-89 4-53 (179)
297 2eby_A Putative HTH-type trans 20.7 40 0.0014 22.8 1.5 23 71-93 27-49 (113)
298 1b0n_A Protein (SINR protein); 20.5 40 0.0014 22.5 1.4 21 71-91 17-37 (111)
299 3k2z_A LEXA repressor; winged 20.4 1.1E+02 0.0036 23.0 4.1 41 47-89 2-45 (196)
300 1rr7_A Middle operon regulator 20.1 48 0.0016 23.9 1.9 24 70-93 94-117 (129)
301 3gzi_A Transcriptional regulat 20.1 76 0.0026 23.1 3.1 42 56-98 26-67 (218)
302 2cw1_A SN4M; lambda CRO fold, 20.0 52 0.0018 20.8 1.8 21 70-90 15-35 (65)
No 1
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.87 E-value=2.7e-22 Score=140.07 Aligned_cols=63 Identities=48% Similarity=0.767 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 37 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
..++.||.||.|+.+|+.+||.+|+.++||+..++++||..|||++.||++||||||+|+||.
T Consensus 13 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~ 75 (80)
T 2dmt_A 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKKS 75 (80)
T ss_dssp CCCCCCCSCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhcc
Confidence 356778899999999999999999999999999999999999999999999999999999974
No 2
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=99.87 E-value=7.1e-22 Score=136.98 Aligned_cols=65 Identities=49% Similarity=0.734 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHH
Q psy3429 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 37 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
..+++||.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|++||||||+|+|+...
T Consensus 5 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~ 69 (77)
T 1nk2_P 5 LPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69 (77)
T ss_dssp CSCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhc
Confidence 34567888999999999999999999999999999999999999999999999999999998654
No 3
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.87 E-value=7.2e-22 Score=137.91 Aligned_cols=66 Identities=32% Similarity=0.640 Sum_probs=61.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAE 103 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~~~ 103 (192)
..+.||.||.|+.+|+.+||.+|+.++||+..++++||..|||++.+|++||||||+|+||..+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~~~ 69 (80)
T 2cue_A 4 GSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEKLR 69 (80)
T ss_dssp CCSSCCCCCCSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHhhhh
Confidence 356688899999999999999999999999999999999999999999999999999999977544
No 4
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=99.87 E-value=4e-22 Score=140.27 Aligned_cols=64 Identities=42% Similarity=0.665 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 37 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
..+++||.||.|+.+|+.+||.+|..++||+..+|++||..|||++.+|++||||||+|+||.+
T Consensus 18 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 81 (84)
T 2kt0_A 18 VPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSNILNLSYKQVKTWFQNQRMKSKRWQ 81 (84)
T ss_dssp CCSCSCCCSSCCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHh
Confidence 4567788999999999999999999999999999999999999999999999999999999754
No 5
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.86 E-value=5.3e-22 Score=138.26 Aligned_cols=62 Identities=24% Similarity=0.388 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
.+++||.||.|+.+|+.+||.+|..++||+..++++||..|||++.+|++||||||+|+||.
T Consensus 14 ~~~~rr~Rt~ft~~Ql~~Le~~f~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 14 PQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp CCCCTTCCSSCCTTTHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 45678889999999999999999999999999999999999999999999999999999984
No 6
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=9.7e-22 Score=133.82 Aligned_cols=63 Identities=40% Similarity=0.699 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
..+.||.|+.|+.+|+.+||.+|+.++||+..++++||..|||++.+|++||||||+|+||..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 4 GSSGRRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp TTSSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 345688899999999999999999999999999999999999999999999999999999853
No 7
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=99.86 E-value=8e-22 Score=131.65 Aligned_cols=61 Identities=48% Similarity=0.755 Sum_probs=56.3
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 40 PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 40 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
..||.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+.+
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 62 (63)
T 2h1k_A 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKEE 62 (63)
T ss_dssp ---CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhhc
Confidence 4578899999999999999999999999999999999999999999999999999999853
No 8
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=99.86 E-value=2.1e-21 Score=134.58 Aligned_cols=65 Identities=48% Similarity=0.732 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEA 102 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~~ 102 (192)
.++.||.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|++||||||+|+|+..+.
T Consensus 10 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k~ 74 (77)
T 1puf_A 10 ARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINKD 74 (77)
T ss_dssp CCTTSCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhhh
Confidence 35567889999999999999999999999999999999999999999999999999999997654
No 9
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.86 E-value=1.5e-21 Score=136.15 Aligned_cols=64 Identities=25% Similarity=0.404 Sum_probs=60.0
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
.++.||.||.|+.+|+.+||.+|+.++||+..++++||..|||++.+|++||||||+|+||...
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 67 (80)
T 2dmq_A 4 GSSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLL 67 (80)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHH
Confidence 3556888999999999999999999999999999999999999999999999999999998653
No 10
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=99.86 E-value=1.3e-21 Score=136.91 Aligned_cols=65 Identities=37% Similarity=0.687 Sum_probs=59.5
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHH
Q psy3429 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 37 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
..+++||.|+.|+.+|+.+||.+|..++||+..++++||..+||++.+|++||||||+|+||...
T Consensus 14 ~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~~ 78 (81)
T 1fjl_A 14 LKRKQRRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 78 (81)
T ss_dssp ---CCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhcc
Confidence 35677889999999999999999999999999999999999999999999999999999998654
No 11
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.86 E-value=5.8e-22 Score=134.98 Aligned_cols=62 Identities=35% Similarity=0.686 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
.++.||.|+.|+.+|+.+||.+|+.++||+..++++||..|||++.+|++||||||+|+||.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (70)
T 2cra_A 4 GSSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKKS 65 (70)
T ss_dssp SCCCCCSCCCSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTSS
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhccc
Confidence 45668889999999999999999999999999999999999999999999999999999974
No 12
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription, transcription facto developmental protein, transcription regulation, NUC homeobox; 2.6A {Mus musculus}
Probab=99.86 E-value=2.3e-22 Score=133.82 Aligned_cols=60 Identities=45% Similarity=0.721 Sum_probs=52.9
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 40 PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 40 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
++||.||.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||.
T Consensus 2 ~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kr~ 61 (62)
T 2vi6_A 2 TKQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRW 61 (62)
T ss_dssp ------CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCGGG
T ss_pred CCCCCCCCCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhhHHhHHhhcchhhc
Confidence 467889999999999999999999999999999999999999999999999999999874
No 13
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=99.86 E-value=7.9e-22 Score=130.80 Aligned_cols=58 Identities=47% Similarity=0.878 Sum_probs=53.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 41 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
.||.||.|+.+|+.+||.+|+.++||+..++++||..+||++.+|++||||||+|+||
T Consensus 3 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk 60 (61)
T 2hdd_A 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60 (61)
T ss_dssp ----CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhcccccc
Confidence 4788999999999999999999999999999999999999999999999999999986
No 14
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.85 E-value=9.6e-22 Score=137.22 Aligned_cols=63 Identities=40% Similarity=0.646 Sum_probs=59.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
.++.||.|+.|+.+|+.+||.+|+.++||+..++++||..|||++.+|++||||||+|+|+.+
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~ 66 (80)
T 2dms_A 4 GSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQ 66 (80)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTT
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHH
Confidence 456788999999999999999999999999999999999999999999999999999999854
No 15
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=99.85 E-value=1.7e-21 Score=127.83 Aligned_cols=57 Identities=91% Similarity=1.271 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 42 rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
||.|+.|+.+|+.+||..|+.++||+..++++||..+||++.+|++||||||+|+||
T Consensus 1 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 578999999999999999999999999999999999999999999999999999987
No 16
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex, DNA-binding, homeobox, NUC developmental protein; 2.70A {Drosophila melanogaster}
Probab=99.85 E-value=1.4e-21 Score=140.33 Aligned_cols=66 Identities=45% Similarity=0.747 Sum_probs=61.4
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHHH
Q psy3429 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEA 102 (192)
Q Consensus 37 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~~ 102 (192)
..+++||.||.|+.+|+.+||..|..++||+..+|++||..+||++.+|+|||||||+|+|+....
T Consensus 13 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~~~ 78 (93)
T 3a01_A 13 TPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTKWRRQTAE 78 (93)
T ss_dssp CCCCCCCCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCCcCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCChhhcccccHhhhhhhhhhhHH
Confidence 345678889999999999999999999999999999999999999999999999999999997643
No 17
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=133.42 Aligned_cols=62 Identities=34% Similarity=0.493 Sum_probs=58.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
.+++||.|+.|+.+|+.+||.+|..++||+..++++||..|||++.+|++||||||+|+||.
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da2_A 4 GSSGRSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARKS 65 (70)
T ss_dssp SCCSCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhhc
Confidence 45678899999999999999999999999999999999999999999999999999999874
No 18
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.85 E-value=3.1e-21 Score=131.39 Aligned_cols=62 Identities=44% Similarity=0.689 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 39 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
...||.|+.|+.+|+.+||.+|+.++||+..++++||..|||++.||++||||||+|+|+..
T Consensus 5 ~~~~r~R~~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 5 SSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 34577899999999999999999999999999999999999999999999999999999853
No 19
>1wh5_A ZF-HD homeobox family protein; structural genomics, zinc finger homeobox family protein, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.85 E-value=7.6e-22 Score=138.04 Aligned_cols=61 Identities=16% Similarity=0.211 Sum_probs=57.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFRE----KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~----~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
.+++||.||.|+.+|+.+||..|+. ++||+..+|++||..|||++++|+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le~~f~~~~~~~~yp~~~~r~~La~~lgL~~~~VkvWFqNrRaK~~~ 78 (80)
T 1wh5_A 14 GGIRKRHRTKFTAEQKERMLALAERIGWRIQRQDDEVIQRFCQETGVPRQVLKVWLHNNKHSGPS 78 (80)
T ss_dssp CCCSCCCSCCCCHHHHHHHHHHHHHHTSCCCTTTHHHHHHHHHHSCCCHHHHHHHHHHHSSSSSC
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhccCcCCCcCHHHHHHHHHHhCCCcccccCCccccCcCCCC
Confidence 4567889999999999999999999 999999999999999999999999999999999764
No 20
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=99.85 E-value=1.3e-21 Score=133.06 Aligned_cols=63 Identities=25% Similarity=0.362 Sum_probs=59.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
.++.||.||.|+.+|+.+||.+|+.++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~~ 66 (70)
T 2da1_A 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQSG 66 (70)
T ss_dssp SCCCCSCSCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhhc
Confidence 456688999999999999999999999999999999999999999999999999999999853
No 21
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.85 E-value=3.4e-21 Score=130.49 Aligned_cols=61 Identities=41% Similarity=0.694 Sum_probs=58.3
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHH
Q psy3429 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 41 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
.||.||.|+.+|+.+||..|..++||+..++++||..|||++.+|++||||||+|+|+...
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 2 PRRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CSCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCCCcCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 4788999999999999999999999999999999999999999999999999999999764
No 22
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.4e-21 Score=136.46 Aligned_cols=62 Identities=21% Similarity=0.351 Sum_probs=58.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhc----CCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREK----QYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~----~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
.++.||.||.|+.+|+.+||.+|+.+ +||+..++++||..|||++.+|+|||||||+|+|+.
T Consensus 5 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~ 70 (80)
T 2da4_A 5 SSGALQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLM 70 (80)
T ss_dssp CCCCCCSSCCCCHHHHHHHHHHHTTTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhc
Confidence 45678889999999999999999999 999999999999999999999999999999999983
No 23
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=99.85 E-value=1.9e-21 Score=131.78 Aligned_cols=60 Identities=45% Similarity=0.700 Sum_probs=57.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 41 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
+||.||.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 2 ~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~ 61 (68)
T 1ahd_P 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61 (68)
T ss_dssp CSCTTCCCCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCCCCCCcCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhc
Confidence 578899999999999999999999999999999999999999999999999999999864
No 24
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=99.85 E-value=1.1e-21 Score=137.44 Aligned_cols=63 Identities=44% Similarity=0.686 Sum_probs=54.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
.+++||.||.|+.+|+.+||..|..++||+..+|++||..|||++++|++||||||+|+||..
T Consensus 17 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 79 (81)
T 1b8i_A 17 NGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKEI 79 (81)
T ss_dssp -------CCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhhc
Confidence 456688999999999999999999999999999999999999999999999999999999854
No 25
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=1.1e-21 Score=133.65 Aligned_cols=62 Identities=52% Similarity=0.865 Sum_probs=58.6
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
..+.||.|+.|+.+|+.+||.+|+.++||+..++++||..+||++.+|++||||||+|+||.
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2djn_A 4 GSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKIKKS 65 (70)
T ss_dssp CCCCCCSSCSSCHHHHHHHHHHHTTCSSCCHHHHHHHHHHSSCCHHHHHHHHHHHHHTCSSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHhhhhccc
Confidence 45668889999999999999999999999999999999999999999999999999999874
No 26
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=99.84 E-value=8.8e-22 Score=133.37 Aligned_cols=62 Identities=42% Similarity=0.727 Sum_probs=59.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHH
Q psy3429 40 PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 40 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
++||.||.|+.+|+.+||.+|..++||+..++++||..+||++.+|++||||||+|+|+.++
T Consensus 2 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 2 SQRRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CSSCSCCCCCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 56888999999999999999999999999999999999999999999999999999998653
No 27
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.84 E-value=3.9e-21 Score=130.21 Aligned_cols=61 Identities=49% Similarity=0.786 Sum_probs=58.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 40 PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 40 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
++||.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 1 ~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~ 61 (68)
T 1ftt_A 1 MRRKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQA 61 (68)
T ss_dssp CCSSSCSSCCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCccCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhh
Confidence 3578899999999999999999999999999999999999999999999999999999864
No 28
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=99.84 E-value=1.6e-21 Score=129.15 Aligned_cols=60 Identities=32% Similarity=0.516 Sum_probs=48.5
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
+++.||.|+.|+.+|+.+||.+|..++||+..++++||..+||++.||++||||||+|+|
T Consensus 2 k~k~rr~Rt~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~k 61 (61)
T 1akh_A 2 KEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 61 (61)
T ss_dssp ----------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhccC
Confidence 466788999999999999999999999999999999999999999999999999999975
No 29
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=99.84 E-value=4.3e-21 Score=126.83 Aligned_cols=58 Identities=48% Similarity=0.788 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 42 rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
||.||.|+.+|+.+||..|+.++||+..++++||..+||++.+|++||||||+|+||+
T Consensus 2 rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~ 59 (60)
T 1jgg_A 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQ 59 (60)
T ss_dssp -CCCCCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHC
T ss_pred CCCCCCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhcc
Confidence 6789999999999999999999999999999999999999999999999999999974
No 30
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB: 2ld5_A*
Probab=99.84 E-value=4e-21 Score=131.97 Aligned_cols=63 Identities=38% Similarity=0.683 Sum_probs=59.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
..+.||.|+.|+.+|+.+||.+|..++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 4 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (73)
T 2l7z_A 4 MLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRVKEKKVI 66 (73)
T ss_dssp SSCCCCCCCCSCHHHHHHHHHHHHHTSCCCHHHHHHHHHHHTSCSHHHHHHHHHHHHHHTTSS
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhhCCCcCHHHHHHHHHHHCCCHHHHHHHHHHHhHHHHHHh
Confidence 345688899999999999999999999999999999999999999999999999999999853
No 31
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein, homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=99.84 E-value=2.3e-21 Score=130.46 Aligned_cols=60 Identities=22% Similarity=0.397 Sum_probs=57.2
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 40 PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 40 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
+.||.||.|+.+|+.+||.+|+.++||+..++++||..+||++.+|++||||||+|+|+.
T Consensus 2 k~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 61 (66)
T 1bw5_A 2 KTTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKR 61 (66)
T ss_dssp CCSCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHCSSC
T ss_pred CCCCCCCCCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHHHHHhHHHHHHHhHH
Confidence 457889999999999999999999999999999999999999999999999999999874
No 32
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=99.84 E-value=4.7e-21 Score=136.03 Aligned_cols=62 Identities=45% Similarity=0.695 Sum_probs=54.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
.++.||.||.|+.+|+.+||..|+.++||+..+|++||..|||++++|++||||||+|+||.
T Consensus 25 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~ 86 (88)
T 2r5y_A 25 NGETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKE 86 (88)
T ss_dssp ------CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHhh
Confidence 45668889999999999999999999999999999999999999999999999999999985
No 33
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.84 E-value=5e-21 Score=131.64 Aligned_cols=64 Identities=39% Similarity=0.656 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 37 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
..+++||.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+||.+
T Consensus 5 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 68 (75)
T 2m0c_A 5 NKGKKRRNRTTFTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKRE 68 (75)
T ss_dssp CCSCCCSCSCSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCCC
T ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHHH
Confidence 4566788899999999999999999999999999999999999999999999999999999853
No 34
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: a.4.1.1
Probab=99.84 E-value=1.5e-21 Score=136.53 Aligned_cols=60 Identities=22% Similarity=0.319 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFRE-----KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~-----~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
.+++||.||.|+.+|+.+|| .|.. ++||+..+|++||..|||+++||+|||||||+|+|+
T Consensus 14 ~~~~rR~Rt~ft~~Ql~~Le-~F~~~~~w~~~yp~~~~r~~La~~lgL~e~qVkvWFqNrR~k~~~ 78 (80)
T 1wh7_A 14 GGTTKRFRTKFTAEQKEKML-AFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNNKNSGPS 78 (80)
T ss_dssp CCCSSCCCCCCCHHHHHHHH-HHHHHHTSCCCSSTTHHHHHHHHHSCCCHHHHHHHHHTTSCCSCC
T ss_pred CCCCCCCCccCCHHHHHHHH-HHHHHcCcCCCCCCHHHHHHHHHHhCcCcCcccccccccccCCCC
Confidence 45678899999999999999 7999 999999999999999999999999999999998764
No 35
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=99.83 E-value=5.8e-21 Score=124.93 Aligned_cols=57 Identities=54% Similarity=0.909 Sum_probs=54.8
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 41 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
+||.|+.|+.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|
T Consensus 2 ~rr~Rt~~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 58 (58)
T 3rkq_A 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58 (58)
T ss_dssp CCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHC
T ss_pred cCCCCCCcCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccCC
Confidence 467899999999999999999999999999999999999999999999999999975
No 36
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=1.3e-20 Score=128.88 Aligned_cols=59 Identities=24% Similarity=0.321 Sum_probs=56.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 42 RKPRTPFTTQQLLSLEKKFRE-KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 42 rr~Rt~ft~~Ql~~Le~~F~~-~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
.++|+.|+.+|+.+||..|.. ++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 2 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~ 61 (72)
T 1uhs_A 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61 (72)
T ss_dssp CCCCCCCCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCccCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhc
Confidence 467999999999999999996 99999999999999999999999999999999999854
No 37
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=1.2e-20 Score=130.49 Aligned_cols=58 Identities=21% Similarity=0.246 Sum_probs=54.5
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 43 KPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 43 r~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
.+|+.||.+|+.+||++|..++||+..+|++||..+||++.||++||||||+|+|+.+
T Consensus 5 ~~r~kfT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~~ 62 (76)
T 2ecc_A 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62 (76)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHHH
Confidence 3467799999999999999999999999999999999999999999999999999853
No 38
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.83 E-value=1.5e-20 Score=128.95 Aligned_cols=59 Identities=24% Similarity=0.287 Sum_probs=56.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 42 RKPRTPFTTQQLLSLEKKFRE-KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 42 rr~Rt~ft~~Ql~~Le~~F~~-~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
+++|+.|+.+|+.+||.+|+. ++||+..++++||..+||++.+|++||||||+|+||..
T Consensus 3 ~k~Rt~ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~ 62 (73)
T 2hi3_A 3 AQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 62 (73)
T ss_dssp CSCCSSCCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhc
Confidence 577999999999999999995 99999999999999999999999999999999999865
No 39
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=99.83 E-value=6.4e-21 Score=125.99 Aligned_cols=58 Identities=38% Similarity=0.666 Sum_probs=50.8
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHH
Q psy3429 44 PRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 44 ~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
.|+.||.+|+.+||..|..++||+..++++||..+||++.+|++||||||+|+|+.++
T Consensus 2 ~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~k 59 (60)
T 3a02_A 2 SHMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQEK 59 (60)
T ss_dssp ---CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC----
T ss_pred CCcccCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHhhcc
Confidence 4899999999999999999999999999999999999999999999999999998653
No 40
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.83 E-value=1.5e-20 Score=135.26 Aligned_cols=64 Identities=31% Similarity=0.482 Sum_probs=60.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcC---------------CChhHHHHhhHhHHHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH---------------LTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~---------------Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
.+++||.|+.|+.+|+.+||.+|+.++||+..+|++||..|| |++.+|++||||||+|+|+...
T Consensus 4 ~~~~rr~R~~ft~~ql~~Le~~F~~~~yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k~kr~~~ 82 (95)
T 2cuf_A 4 GSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKEIKRRAN 82 (95)
T ss_dssp SSCCCCCSCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHHHHHHhh
Confidence 456788999999999999999999999999999999999999 9999999999999999998654
No 41
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=99.83 E-value=1e-20 Score=127.72 Aligned_cols=60 Identities=43% Similarity=0.697 Sum_probs=57.1
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 41 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
.||.|+.|+.+|+.+||.+|..++||+..++++||..+||++.+|++||||||+|+|+..
T Consensus 1 ~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 1 GRRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCCCSCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred CcCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 378899999999999999999999999999999999999999999999999999999753
No 42
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor, homeodomain, structural genomics, oxford production facility, OPPF, transcription; 2.60A {Homo sapiens}
Probab=99.82 E-value=7.4e-21 Score=137.20 Aligned_cols=65 Identities=22% Similarity=0.214 Sum_probs=57.3
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEA 102 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~~ 102 (192)
....+|+|+.|+.+|+.+||..|+.++||+..++++||..|||+++||++||||||+|+||.+.+
T Consensus 22 ~~~~~r~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk~~lk 86 (96)
T 3nar_A 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWKNGNLK 86 (96)
T ss_dssp -----CCSSSSCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTTCCH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHeeecchhhhhHhhhhccc
Confidence 34456789999999999999999999999999999999999999999999999999999986543
No 43
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=1.2e-20 Score=136.21 Aligned_cols=63 Identities=52% Similarity=0.737 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHH
Q psy3429 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 39 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
+..||.||.|+.+|+.+||.+|..++||+..+|++||..|||+++||++||||||+|+|+..+
T Consensus 32 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 32 GSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp -----CCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCcCcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 456788999999999999999999999999999999999999999999999999999998753
No 44
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=99.82 E-value=1.7e-20 Score=122.44 Aligned_cols=54 Identities=48% Similarity=0.832 Sum_probs=51.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
|.|+.+|+.+||..|..++||+..+|++||..+||++++|++||||||+|+||+
T Consensus 2 T~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~ 55 (56)
T 3a03_A 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRRQ 55 (56)
T ss_dssp --CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred CccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhccc
Confidence 689999999999999999999999999999999999999999999999999985
No 45
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.82 E-value=4e-20 Score=134.39 Aligned_cols=66 Identities=21% Similarity=0.272 Sum_probs=61.1
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhc---------------------CCChhHHHHhhHhHHHH
Q psy3429 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL---------------------HLTETQVKIWFQNRRAK 95 (192)
Q Consensus 37 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l---------------------~Ls~~qV~~WFqNrR~k 95 (192)
..+++||.||.|+..|+.+||++|+.++||+..+|++||..| +|++.+|++||||||+|
T Consensus 2 ~~~~~Rr~Rt~ft~~ql~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 2 SSGSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp TTCCSCCCCCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCccCCHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 356778999999999999999999999999999999999999 79999999999999999
Q ss_pred HHHHHHH
Q psy3429 96 AKRLQEA 102 (192)
Q Consensus 96 ~kr~~~~ 102 (192)
+|+..+.
T Consensus 82 ~kr~~~~ 88 (102)
T 2da6_A 82 EAFRQKL 88 (102)
T ss_dssp HHHHHHH
T ss_pred HHHhhHh
Confidence 9987544
No 46
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.82 E-value=4.6e-20 Score=126.44 Aligned_cols=63 Identities=17% Similarity=0.261 Sum_probs=58.4
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFRE---KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~---~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
.++.||.|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.||++||||||+|+|+..
T Consensus 4 ~~~~rr~R~~~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~ 69 (73)
T 1x2n_A 4 GSSGKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSG 69 (73)
T ss_dssp CSSSCCSSCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccc
Confidence 3556788999999999999999987 99999999999999999999999999999999999853
No 47
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.80 E-value=2.9e-20 Score=127.74 Aligned_cols=59 Identities=22% Similarity=0.307 Sum_probs=56.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 42 rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
++.|+.|+.+|+.+||..|+.++||+..++++||..+||++.+|++||||||+|+||.+
T Consensus 7 ~~~Rt~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~ 65 (74)
T 2ly9_A 7 FGIRAKKTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSK 65 (74)
T ss_dssp CCTTCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTT
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhC
Confidence 67899999999999999999999999999999999999999999999999999999853
No 48
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=99.80 E-value=5.3e-20 Score=130.13 Aligned_cols=61 Identities=28% Similarity=0.412 Sum_probs=57.1
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHHH
Q psy3429 42 RKPRTPFTTQQLLSLEKKF---REKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEA 102 (192)
Q Consensus 42 rr~Rt~ft~~Ql~~Le~~F---~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~~ 102 (192)
||.|+.|+.+|+.+||.+| ..++||+..++++||..+||++.||++||||||+|+|+....
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 65 (87)
T 1b72_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGK 65 (87)
T ss_dssp -CCCCCCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGG
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhcccc
Confidence 6789999999999999999 899999999999999999999999999999999999997543
No 49
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=99.80 E-value=1.1e-19 Score=124.51 Aligned_cols=60 Identities=28% Similarity=0.421 Sum_probs=57.0
Q ss_pred CCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHH
Q psy3429 42 RKPRTPFTTQQLLSLEKKF---REKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 42 rr~Rt~ft~~Ql~~Le~~F---~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
||.|+.|+.+|+.+||.+| ..++||+..++++||..+||++.||++||||||+|+|+...
T Consensus 2 rr~R~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~ 64 (73)
T 1puf_B 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIG 64 (73)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTT
T ss_pred CCCCCcCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcccccc
Confidence 6789999999999999999 89999999999999999999999999999999999998643
No 50
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=5.3e-20 Score=127.18 Aligned_cols=59 Identities=22% Similarity=0.402 Sum_probs=55.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 42 rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
.+.|+.|+.+|+.+||.+|..++||+..++++||..+||++++|++||||||+|+||..
T Consensus 9 ~~~R~~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~~ 67 (76)
T 2dn0_A 9 SIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNLK 67 (76)
T ss_dssp CCCCCCCCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSCC
T ss_pred CCCCccCCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHhc
Confidence 34589999999999999999999999999999999999999999999999999999843
No 51
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.1e-19 Score=125.38 Aligned_cols=58 Identities=22% Similarity=0.335 Sum_probs=54.6
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 43 KPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 43 r~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
++|+.||.+|+.+||..|..++||+..++++||..+||++++|++||||||+|+|+..
T Consensus 9 ~kr~~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~~ 66 (75)
T 2da5_A 9 TKYKERAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAEE 66 (75)
T ss_dssp CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHSS
T ss_pred CCCccCCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHhh
Confidence 3467799999999999999999999999999999999999999999999999999854
No 52
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=99.80 E-value=1.8e-19 Score=126.69 Aligned_cols=63 Identities=21% Similarity=0.275 Sum_probs=57.9
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFRE---KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~---~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
..++||.|+.|+.+|+.+||.+|.. ++||+..+|++||..+||++.||++||||+|+|+|+..
T Consensus 4 ~~~~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~ 69 (83)
T 2dmn_A 4 GSSGKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDM 69 (83)
T ss_dssp CCCCCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHH
T ss_pred CCCCCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHH
Confidence 3456788999999999999999987 59999999999999999999999999999999998743
No 53
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.80 E-value=1.6e-19 Score=121.24 Aligned_cols=58 Identities=21% Similarity=0.284 Sum_probs=54.7
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHh-cCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFRE-KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~-~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k 95 (192)
.++.||.||+|+.+|+.+|+.+|+. +.||+...|++||.++||++++|++||||+|--
T Consensus 4 ~~~~kR~RT~~s~eQL~~Lqs~f~~~~~yPd~~~r~~La~~tGL~~~~IqVWFQNrR~~ 62 (71)
T 1wi3_A 4 GSSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYH 62 (71)
T ss_dssp CCCCCCCCCCCCSHHHHHHHHHHHHHCSCCCHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCccCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHhhccceee
Confidence 3467899999999999999999999 999999999999999999999999999999964
No 54
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A {Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Probab=99.79 E-value=2.7e-20 Score=135.06 Aligned_cols=68 Identities=24% Similarity=0.333 Sum_probs=54.1
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHh------------------cC---CChhHHHHhhHhHH
Q psy3429 35 LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSS------------------LH---LTETQVKIWFQNRR 93 (192)
Q Consensus 35 ~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~------------------l~---Ls~~qV~~WFqNrR 93 (192)
....+++||.||.|+.+|+.+||..|+.++||+..+|++||.. || |++.+|++||||||
T Consensus 3 ~~~~~k~rr~Rt~ft~~Ql~~LE~~F~~~~yP~~~~R~eLA~~~n~~~~~~~g~~~~~~~~lg~~~lse~qV~vWFqNRR 82 (99)
T 1lfb_A 3 IDPTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRR 82 (99)
T ss_dssp ----------CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHTTTTCCTTCTTTTGGGCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCcCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhccccccccccccccccccCccccCcceeeeccHHHH
Confidence 3456788999999999999999999999999999999999999 88 99999999999999
Q ss_pred HHHHHHHHH
Q psy3429 94 AKAKRLQEA 102 (192)
Q Consensus 94 ~k~kr~~~~ 102 (192)
+++|+..+.
T Consensus 83 ~k~k~k~~~ 91 (99)
T 1lfb_A 83 KEEAFRHKL 91 (99)
T ss_dssp HTTSCCC--
T ss_pred HHHHHhchh
Confidence 998876543
No 55
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.79 E-value=3.4e-20 Score=123.96 Aligned_cols=58 Identities=24% Similarity=0.355 Sum_probs=55.4
Q ss_pred CCCCCCCCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 41 NRKPRTPFTTQQLLSLEKKF---REKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 41 ~rr~Rt~ft~~Ql~~Le~~F---~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
.+|.|+.|+.+|+.+||.+| ..++||+..++++||..+||++.||++||||+|+|+||
T Consensus 3 ~rr~R~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk 63 (64)
T 1du6_A 3 GHIEGRHMNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63 (64)
T ss_dssp CCCCCCSSTTTHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHTTTSSC
T ss_pred CCCCCCcCCHHHHHHHHHHHHHcccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhcc
Confidence 46789999999999999999 89999999999999999999999999999999999875
No 56
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=99.79 E-value=1.7e-19 Score=119.07 Aligned_cols=55 Identities=29% Similarity=0.445 Sum_probs=53.1
Q ss_pred CCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 44 PRTPFTTQQLLSLEKKFRE---KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 44 ~Rt~ft~~Ql~~Le~~F~~---~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
+|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.||++||||||+|+|+
T Consensus 1 rr~~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 1 RGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp CCCSCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred CcCcCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 3789999999999999999 999999999999999999999999999999999986
No 57
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=99.79 E-value=9.1e-20 Score=129.11 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=55.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 39 KPNRKPRTPFTTQQLLSLEKKFRE---KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 39 ~~~rr~Rt~ft~~Ql~~Le~~F~~---~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
.+++|.|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.||++||||||+|+|
T Consensus 25 ~~~~k~r~~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 25 STKPYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp ESSCCTTCCCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 445667999999999999999999 99999999999999999999999999999999987
No 58
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA complex, SOX; 2.05A {Mus musculus}
Probab=99.79 E-value=8.7e-20 Score=143.60 Aligned_cols=65 Identities=32% Similarity=0.436 Sum_probs=51.8
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 36 RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 36 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
...+++||.||.|+.+|+.+||++|..++||+..+|++||..+||++++|+|||||||+|+||..
T Consensus 94 ~~~~~~rr~Rt~ft~~Ql~~LE~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~~ 158 (164)
T 2xsd_C 94 AAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITGLADSLQLEKEVVRVWFCNRRQKEKRMT 158 (164)
T ss_dssp ------------CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTBSC
T ss_pred cccccCCCCceeccHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCCChhhhhhhhHHhhHHHhhcc
Confidence 34567788999999999999999999999999999999999999999999999999999999864
No 59
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A 1oct_C* 1pou_A 1pog_A 1hdp_A
Probab=99.78 E-value=1.2e-19 Score=142.12 Aligned_cols=62 Identities=32% Similarity=0.535 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
..++||.||.|+.+|+.+||++|..++||+..+|++||..+||++++|+|||||||+|+||+
T Consensus 98 ~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 159 (160)
T 1e3o_C 98 LSRRRKKRTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 159 (160)
T ss_dssp ------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTSC
T ss_pred CCCCCcCccccCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHCCChHHhhHhhHHhhhhhhcc
Confidence 35678889999999999999999999999999999999999999999999999999999974
No 60
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=99.78 E-value=2.7e-19 Score=127.37 Aligned_cols=54 Identities=20% Similarity=0.343 Sum_probs=52.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
.||.+|+.+||+.|..++||+..+|++||..|||+++||+|||||||+|||+.+
T Consensus 17 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~lgLte~qVkvWFqNRR~k~rk~~ 70 (89)
T 2ecb_A 17 EKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKE 70 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHSCC
T ss_pred cCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCcChHHCeecccccchHHHHHH
Confidence 789999999999999999999999999999999999999999999999999854
No 61
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding domain, transcription, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.78 E-value=8.3e-20 Score=125.20 Aligned_cols=57 Identities=23% Similarity=0.328 Sum_probs=53.8
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 42 RKPRTPFTTQQLLSLEKKF-REKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 42 rr~Rt~ft~~Ql~~Le~~F-~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
.+.|+.++.+|+.+||+.| ..++||+..+|++||..+||+++||++||||||+|+|+
T Consensus 9 ~k~r~r~~~~ql~~LE~~F~~~~~yp~~~~r~~LA~~l~l~e~qVqvWFqNRR~k~r~ 66 (72)
T 2cqx_A 9 IKDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDKP 66 (72)
T ss_dssp CCCCCCSCSCSTTHHHHHHHHTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChhhcchhhhhcccCCCC
Confidence 4567778899999999999 99999999999999999999999999999999999986
No 62
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary, CPHD, POU domain, transcription factor, transcription/DNA complex; HET: DNA; 2.30A {Rattus norvegicus} SCOP: a.4.1.1 a.35.1.1
Probab=99.78 E-value=2e-19 Score=138.96 Aligned_cols=64 Identities=31% Similarity=0.495 Sum_probs=55.6
Q ss_pred cCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 36 RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 36 ~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
...+++||.||.|+.+|+.+||.+|..++||+..+|++||..+||++++|++||||||+|+||+
T Consensus 82 ~~~~~~rr~Rt~ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kr~ 145 (146)
T 1au7_A 82 GANERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRV 145 (146)
T ss_dssp -------CCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCCCcCccHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCChhhchhhhHhhhhhhhcc
Confidence 3456778889999999999999999999999999999999999999999999999999999874
No 63
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex, helix-turn-helix (HTH), DNA-binding, homeobox, nucleus, transcription regulation; 2.51A {Homo sapiens}
Probab=99.78 E-value=3.4e-19 Score=138.26 Aligned_cols=61 Identities=31% Similarity=0.501 Sum_probs=58.2
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
.+++||.|+.|+.+|+.+||++|..++||+..+|++||..+||+++||++||||||+|+||
T Consensus 90 ~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNrR~k~Kk 150 (151)
T 3d1n_I 90 PSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNYDREVVRVWFSNRRQTLKN 150 (151)
T ss_dssp CCCCCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhHHHHHHHHhccCC
Confidence 4567888999999999999999999999999999999999999999999999999999986
No 64
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=99.77 E-value=4.7e-19 Score=118.86 Aligned_cols=53 Identities=25% Similarity=0.378 Sum_probs=50.3
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 48 FTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 48 ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
-+.+|+.+||+.|..++||+..+|++||..+||+++||++||||||+|+|+..
T Consensus 11 ~~~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg~ 63 (66)
T 3nau_A 11 KTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRGI 63 (66)
T ss_dssp CCHHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhccC
Confidence 36899999999999999999999999999999999999999999999999753
No 65
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration calorimetry, protein-DNA complex, transcription/DNA complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1akh_B* 1apl_C* 1yrn_B*
Probab=99.77 E-value=4e-19 Score=124.84 Aligned_cols=59 Identities=27% Similarity=0.405 Sum_probs=54.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 42 RKPRTPFTTQQLLSLEKKFRE---KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 42 rr~Rt~ft~~Ql~~Le~~F~~---~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
++.|+.|+.+|+.+||.+|.. ++||+..++++||..+||++.||++||||||+|+|+..
T Consensus 3 ~krr~rft~~q~~~Le~~f~~h~~~~yP~~~~r~~La~~~gLt~~qV~~WFqNrR~r~kk~~ 64 (83)
T 1le8_B 3 PYRGHRFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTIT 64 (83)
T ss_dssp --CCCCCCHHHHHHHHHHHHHTSSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTSC
T ss_pred CCCCCCCCHHHHHHHHHHHHhhCCCCCcCHHHHHHHHHHHCCCHHHcccccHHHHccccccc
Confidence 445677999999999999999 99999999999999999999999999999999999853
No 66
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=1.2e-18 Score=123.96 Aligned_cols=54 Identities=22% Similarity=0.384 Sum_probs=51.7
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
.||.+|+.+||..|..++||+..+|++||..+||++++|++||||||+|+|+.+
T Consensus 19 ~~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~~ 72 (89)
T 2dmp_A 19 EKTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSME 72 (89)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTSC
T ss_pred cCCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHHh
Confidence 489999999999999999999999999999999999999999999999998754
No 67
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription factor DNA complex, pore, stem cells; HET: DNA; 2.80A {Mus musculus} PDB: 1ocp_A
Probab=99.75 E-value=1.1e-18 Score=136.04 Aligned_cols=61 Identities=30% Similarity=0.496 Sum_probs=57.7
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 39 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
+++||.||.|+.+|+.+||.+|..++||+..+|++||..+||++++|+|||||||+|+||.
T Consensus 94 ~~~rr~Rt~ft~~Q~~~Le~~F~~~~yps~~~r~~LA~~l~L~~~qV~vWFqNRR~k~Kr~ 154 (155)
T 3l1p_A 94 QARKRKRTSIENRVRWSLETMFLKSPKPSLQQITHIANQLGLEKDVVRVWFSNRRQKGKRS 154 (155)
T ss_dssp CCSCCCCCCCCHHHHHHHHTTTTTCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHC-
T ss_pred cCCCCCCcccCHHHHHHHHHHHccCCCCCHHHHHHHHHHcCCChhheeeccccccccccCC
Confidence 5667889999999999999999999999999999999999999999999999999999974
No 68
>2e19_A Transcription factor 8; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=1.1e-18 Score=116.92 Aligned_cols=54 Identities=22% Similarity=0.255 Sum_probs=50.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 45 RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
+..++.+|+.+||++|..++||+..+|++||..+||++++|++||||||+|.++
T Consensus 7 ~~~p~~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~L~e~qVqvWFqNRRak~~~ 60 (64)
T 2e19_A 7 GQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQIS 60 (64)
T ss_dssp CCCCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTCSC
T ss_pred CCCccHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcChhhcCcchhcccCCCCC
Confidence 345679999999999999999999999999999999999999999999998765
No 69
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=99.74 E-value=1.7e-18 Score=117.78 Aligned_cols=55 Identities=55% Similarity=0.853 Sum_probs=52.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
...+..|+.+||+.|..++||+..+|++||..+||+++||++||||||+|+||.+
T Consensus 9 ~~~t~~ql~~LE~~F~~~~yp~~~~r~~LA~~l~Lte~qVqvWFqNRRak~kr~~ 63 (69)
T 2l9r_A 9 SHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63 (69)
T ss_dssp CCCCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHSCCSS
T ss_pred CcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCChhheeecchhhhhhhhhhh
Confidence 4678999999999999999999999999999999999999999999999998753
No 70
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: a.4.1.1
Probab=99.73 E-value=1.2e-18 Score=116.67 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=46.2
Q ss_pred HHHHHHHHHHH-HhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 50 TQQLLSLEKKF-REKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 50 ~~Ql~~Le~~F-~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
.+|+.+||+.| ..++||+..+|++||..|||+++||++||||||+|+|+
T Consensus 9 ~~~~~~LE~~F~~~~~yp~~~~r~~LA~~l~LterQVkvWFqNRR~k~k~ 58 (64)
T 1x2m_A 9 AQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 58 (64)
T ss_dssp SCHHHHHHHHHHTTCSSCCHHHHHHHHHHHCSCHHHHHHHHHHHHHHSCC
T ss_pred chHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHhccCC
Confidence 46899999999 57999999999999999999999999999999999885
No 71
>2d5v_A Hepatocyte nuclear factor 6; transcription factor, transcription-DNA complex; 2.00A {Rattus norvegicus} PDB: 1s7e_A
Probab=99.73 E-value=2.1e-18 Score=135.36 Aligned_cols=64 Identities=27% Similarity=0.306 Sum_probs=54.8
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 37 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
...+.||.||.|+.+|+.+||.+|+.++||+..+|++||..+||++.||++||||||+|+|+..
T Consensus 93 ~~~~~rr~Rt~ft~~q~~~Le~~F~~~~yp~~~~r~~la~~l~L~~~qV~~WFqNrR~r~k~~~ 156 (164)
T 2d5v_A 93 RGNTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLDKW 156 (164)
T ss_dssp -------CCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSCC-
T ss_pred CCCCCCCCCCcCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHhhhcChhhhccccccC
Confidence 3456688999999999999999999999999999999999999999999999999999998754
No 72
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=99.68 E-value=4.3e-17 Score=110.09 Aligned_cols=56 Identities=20% Similarity=0.209 Sum_probs=50.4
Q ss_pred CCCCHHHHHHHHHHHH---hcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHH
Q psy3429 46 TPFTTQQLLSLEKKFR---EKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~---~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
..|+.+|+.+|+.+|. .++||+..++++||..+||++.||++||||+|+|+|+...
T Consensus 3 g~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~ 61 (67)
T 3k2a_A 3 GIFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMI 61 (67)
T ss_dssp ---CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC-
T ss_pred CcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHH
Confidence 3799999999999999 9999999999999999999999999999999999998543
No 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=99.67 E-value=1.6e-17 Score=133.73 Aligned_cols=62 Identities=24% Similarity=0.341 Sum_probs=53.9
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcC---------------------CChhHHHHhhHhHHHH
Q psy3429 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH---------------------LTETQVKIWFQNRRAK 95 (192)
Q Consensus 37 ~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~---------------------Ls~~qV~~WFqNrR~k 95 (192)
..+++||.||.|+..|+.+||++|..++||+..+|++||..+| |++.+|++||||||++
T Consensus 111 ~~~k~rr~R~~ft~~ql~~Le~~F~~~~yp~~~~Re~la~~~~~~~~~~~G~~~~~~~glg~~~lte~~V~~WFqNRR~~ 190 (194)
T 1ic8_A 111 PTKKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKE 190 (194)
T ss_dssp ------CCCCCCCHHHHHHHHHHHHHHCCCCTTTTHHHHHHHHHHHHHHSSCCCTTCCTTGGGCCCHHHHHHHHHHHHHH
T ss_pred ccccCCCCCcccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCchhhccccccccccccccccccCccccchhchhhhhh
Confidence 4577789999999999999999999999999999999999999 9999999999999998
Q ss_pred HHH
Q psy3429 96 AKR 98 (192)
Q Consensus 96 ~kr 98 (192)
+|.
T Consensus 191 ~k~ 193 (194)
T 1ic8_A 191 EAF 193 (194)
T ss_dssp CC-
T ss_pred hhc
Confidence 764
No 74
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=99.60 E-value=6.9e-16 Score=125.96 Aligned_cols=62 Identities=24% Similarity=0.342 Sum_probs=53.5
Q ss_pred ccCCCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcC---------------------CChhHHHHhhHhHH
Q psy3429 35 LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH---------------------LTETQVKIWFQNRR 93 (192)
Q Consensus 35 ~~~~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~---------------------Ls~~qV~~WFqNrR 93 (192)
....+++||.|+.|+.+|+.+||++|..++||+..+|++||..+| |++.+|++||||||
T Consensus 136 ~~~~~k~RR~R~~ft~~ql~~Le~~F~~~~YP~~~~ReeLA~~~n~~~~~~rg~~~~~~~~L~~~~lte~~V~~WFqNRR 215 (221)
T 2h8r_A 136 EPTNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRR 215 (221)
T ss_dssp ------CCCCCCCCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTTCCSTTGGGGTTSCCCHHHHHHHHHHHH
T ss_pred ccccCCCCCCCcCCCHHHHHHHHHHHHcCCCCCHHHHHHHHHHHChhhhcccccccchhccccccccCHHHHHHHhHHhh
Confidence 345677899999999999999999999999999999999999988 89999999999999
Q ss_pred HHH
Q psy3429 94 AKA 96 (192)
Q Consensus 94 ~k~ 96 (192)
++.
T Consensus 216 ~~~ 218 (221)
T 2h8r_A 216 KEE 218 (221)
T ss_dssp TTC
T ss_pred hhh
Confidence 763
No 75
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=99.60 E-value=2.6e-15 Score=106.43 Aligned_cols=56 Identities=27% Similarity=0.284 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHH
Q psy3429 46 TPFTTQQLLSLEKKFRE---KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~---~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
..|+.+++.+|+.+|.. ++||+..+|++||.++||++.||++||+|+|.|+++...
T Consensus 10 ~~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 10 HMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 46899999999999987 999999999999999999999999999999999988643
No 76
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=3.9e-15 Score=100.49 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=44.1
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHH
Q psy3429 50 TQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95 (192)
Q Consensus 50 ~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k 95 (192)
++|+.+||++|..|++|+..++..||..+||..++|++||||||++
T Consensus 14 k~ql~~Lk~yF~~n~~Ps~eei~~LA~~lgL~~~VVrVWFqNrRa~ 59 (71)
T 2da7_A 14 KDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59 (71)
T ss_dssp THHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHHHHHHhhcccc
Confidence 5789999999999999999999999999999999999999999974
No 77
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Probab=99.45 E-value=1.4e-14 Score=126.21 Aligned_cols=57 Identities=32% Similarity=0.506 Sum_probs=53.5
Q ss_pred CCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 41 ~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
.++.|+.|+.+|+.+||+.|+.++||+..+|++||.++||+++||++||||||+|+|
T Consensus 365 ~~~~~~~~~~~q~~~Le~~f~~~~yp~~~~~~~la~~~~l~~~qv~~wf~n~r~~~~ 421 (421)
T 1mh3_A 365 QTAAAAAISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421 (421)
T ss_dssp HHHHHCSSCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHCCCC
T ss_pred hhhhhhhhcchHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhHhhhhcccccC
Confidence 356688999999999999999999999999999999999999999999999998865
No 78
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational analysis, G protein, GAS subunit, A2A adenosine receptor, cell-penetrating peptides; NMR {Synthetic} PDB: 2o00_A
Probab=98.69 E-value=6.6e-10 Score=65.99 Aligned_cols=20 Identities=55% Similarity=0.780 Sum_probs=17.7
Q ss_pred hHHHHhhHhHHHHHHHHHHH
Q psy3429 83 TQVKIWFQNRRAKAKRLQEA 102 (192)
Q Consensus 83 ~qV~~WFqNrR~k~kr~~~~ 102 (192)
+||+|||||||+||||.+..
T Consensus 1 rQVkIWFQNRRaK~Kk~~~~ 20 (37)
T 2nzz_A 1 RQIKIWFQNRRMKWKKRVFN 20 (37)
T ss_dssp CCTTTTTTCSHHHHTSSHHH
T ss_pred CCceeccHHHHHHHHHHhHH
Confidence 48999999999999997755
No 79
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=96.70 E-value=0.0021 Score=42.94 Aligned_cols=39 Identities=26% Similarity=0.437 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHh
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqN 91 (192)
.+.|+.+|...+.+.....+.|+.+.+|+..||+-||-.
T Consensus 18 ~e~L~~Yy~~hk~L~EeDl~~L~~kskms~qqvkdwFa~ 56 (70)
T 2ys9_A 18 IQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDS 56 (70)
T ss_dssp CHHHHHHHHHTCCCCTTHHHHHHHHTTCCHHHHHHHHHH
T ss_pred chHHHHHHHHhcccchhhHHHHHHHhCCCHHHHHHHHHh
Confidence 478999999999999999999999999999999999953
No 80
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=91.60 E-value=0.44 Score=29.73 Aligned_cols=46 Identities=17% Similarity=0.320 Sum_probs=32.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHh
Q psy3429 45 RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqN 91 (192)
|..|+.++.......+. ..........++|.++|++...|..|...
T Consensus 3 r~~ys~efK~~~~~~~~-~g~s~~~~~~~vA~~~gIs~~tl~~W~~~ 48 (59)
T 2glo_A 3 RRIFTPHFKLQVLESYR-NDNDCKGNQRATARKYNIHRRQIQKWLQC 48 (59)
T ss_dssp CCCCCHHHHHHHHHHHH-HCTTTTTCHHHHHHHTTSCHHHHHHHHTT
T ss_pred CCcCCHHHHHHHHHHHH-cCCCcchHHHHHHHHHCcCHHHHHHHHHH
Confidence 45789988777755544 33321223568999999999999999754
No 81
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=91.37 E-value=1.4 Score=29.58 Aligned_cols=47 Identities=11% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhH
Q psy3429 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 39 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFq 90 (192)
+++|+.+..|+.++....-..+. ... ...++|+.+|++...|..|..
T Consensus 14 ~~~~~~~~~ys~e~k~~~v~~~~-~g~----s~~~iA~~~gIs~sTl~rW~k 60 (87)
T 2elh_A 14 TKGKRPLRSLTPRDKIHAIQRIH-DGE----SKASVARDIGVPESTLRGWCK 60 (87)
T ss_dssp SCCSSCCSSCCHHHHHHHHHHHH-HTC----CHHHHHHHHTCCHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHHHHHH-CCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 33455677899988655555554 332 256889999999999999974
No 82
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=90.98 E-value=0.67 Score=33.16 Aligned_cols=49 Identities=16% Similarity=0.297 Sum_probs=38.6
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHH
Q psy3429 44 PRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95 (192)
Q Consensus 44 ~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k 95 (192)
+|..||.++...+-..+..+.... ..++|+.+|++...|..|..+++..
T Consensus 4 ~r~~~t~e~K~~iv~~~~~~g~~~---~~~~A~~~gvs~stl~~~~~~~~~~ 52 (131)
T 1hlv_A 4 KRRQLTFREKSRIIQEVEENPDLR---KGEIARRFNIPPSTLSTILKNKRAI 52 (131)
T ss_dssp SSCCCCHHHHHHHHHHHHHCTTSC---HHHHHHHHTCCHHHHHHHHHTHHHH
T ss_pred cceeCCHHHHHHHHHHHHHCCCCc---HHHHHHHhCCCHHHHHHHHhchhhh
Confidence 578899999887777776665544 3368999999999999999876654
No 83
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=90.91 E-value=0.68 Score=31.32 Aligned_cols=49 Identities=10% Similarity=0.160 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
.++..+..+|..+|-.. ..-.++|..+|++...|+.+...-|.+.|+..
T Consensus 37 ~L~~~~r~vl~l~~~~g-----~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l 85 (92)
T 3hug_A 37 QLSAEHRAVIQRSYYRG-----WSTAQIATDLGIAEGTVKSRLHYAVRALRLTL 85 (92)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 36677777776654322 23678899999999999999988887777654
No 84
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=86.05 E-value=1 Score=29.94 Aligned_cols=50 Identities=18% Similarity=0.145 Sum_probs=38.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHH
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
..++..+..+|..+++ . ..-.++|..+|+++..|+.+..+-+.|.+....
T Consensus 20 ~~Lt~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 69 (82)
T 1je8_A 20 NQLTPRERDILKLIAQ--G----LPNKMIARRLDITESTVKVHVKHMLKKMKLKSR 69 (82)
T ss_dssp GGSCHHHHHHHHHHTT--T----CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSH
T ss_pred ccCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 4588999999988542 2 246789999999999999999877766655433
No 85
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=85.35 E-value=1.3 Score=30.83 Aligned_cols=48 Identities=8% Similarity=-0.066 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 45 RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
...++..++.+|...++-- .-.++|..+|+++..|+.+..+-+.|..-
T Consensus 32 ~~~Lt~re~~Vl~l~~~G~------s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFAEGF------LVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSSCCHHHHHHHHHHHHTC------CHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 4568999999998865432 24889999999999999998876665543
No 86
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=85.32 E-value=0.99 Score=28.34 Aligned_cols=48 Identities=13% Similarity=-0.077 Sum_probs=36.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
.++..+..+|...|... ..-.++|..+|++...|+.|...-+.+.++.
T Consensus 15 ~L~~~~r~il~l~~~~g-----~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~ 62 (70)
T 2o8x_A 15 DLTTDQREALLLTQLLG-----LSYADAAAVCGCPVGTIRSRVARARDALLAD 62 (70)
T ss_dssp SSCHHHHHHHHHHHTSC-----CCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-
T ss_pred hCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHH
Confidence 47788888888775332 2357899999999999999998777666654
No 87
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=84.27 E-value=1.5 Score=29.88 Aligned_cols=47 Identities=19% Similarity=0.127 Sum_probs=35.7
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
..++..+..+|..+++... ..++|..+|+++..|+.+..+-+.|.+.
T Consensus 26 ~~Lt~~e~~vl~l~~~g~s------~~eIA~~l~is~~tV~~~l~r~~~kL~~ 72 (95)
T 3c57_A 26 SGLTDQERTLLGLLSEGLT------NKQIADRMFLAEKTVKNYVSRLLAKLGM 72 (95)
T ss_dssp -CCCHHHHHHHHHHHTTCC------HHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred hcCCHHHHHHHHHHHcCCC------HHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 3588999999988643322 4789999999999999988776655543
No 88
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=84.20 E-value=3 Score=29.96 Aligned_cols=49 Identities=14% Similarity=0.065 Sum_probs=34.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
.++..+..+|. . |.....-.++|..+|++...|+.+...-|.+.|+...
T Consensus 109 ~L~~~~r~v~~-~-----~~~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~~l~ 157 (164)
T 3mzy_A 109 NFSKFEKEVLT-Y-----LIRGYSYREIATILSKNLKSIDNTIQRIRKKSEEWIK 157 (164)
T ss_dssp HSCHHHHHHHH-H-----HTTTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHH-H-----HHcCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555 2 2233356789999999999999999877777766543
No 89
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=82.49 E-value=2.7 Score=26.53 Aligned_cols=49 Identities=18% Similarity=0.173 Sum_probs=37.2
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 45 RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
-..++..+..+|..++ ..+ .-.++|..+|++...|+.++.+-+.|.+..
T Consensus 9 ~~~L~~~e~~il~~~~--~g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~ 57 (74)
T 1fse_A 9 KPLLTKREREVFELLV--QDK----TTKEIASELFISEKTVRNHISNAMQKLGVK 57 (74)
T ss_dssp CCCCCHHHHHHHHHHT--TTC----CHHHHHHHHTSCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHHH--cCC----CHHHHHHHHCCCHHHHHHHHHHHHHHHCCC
Confidence 4568899999998853 232 356899999999999999998766665543
No 90
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=81.93 E-value=3.1 Score=23.52 Aligned_cols=40 Identities=8% Similarity=0.169 Sum_probs=28.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHh
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqN 91 (192)
.++.++...+...+.. .+ ...++|+.+|++...|..|...
T Consensus 5 ~l~~~~~~~i~~~~~~-g~----s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHhh
Confidence 4667766555455533 22 2567899999999999999854
No 91
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=81.13 E-value=0.89 Score=26.47 Aligned_cols=42 Identities=5% Similarity=0.156 Sum_probs=28.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
.++.++...+...+... . ...+||..+|++...|..|+....
T Consensus 5 ~~~~~~~~~i~~l~~~g--~---s~~~ia~~lgvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 5 AINKHEQEQISRLLEKG--H---PRQQLAIIFGIGVSTLYRYFPASS 46 (52)
T ss_dssp SSCTTHHHHHHHHHHTT--C---CHHHHHHTTSCCHHHHHHHSCTTC
T ss_pred CCCHHHHHHHHHHHHcC--C---CHHHHHHHHCCCHHHHHHHHHHcc
Confidence 35555655555555432 2 356889999999999999997543
No 92
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=80.66 E-value=4.3 Score=25.90 Aligned_cols=50 Identities=10% Similarity=0.044 Sum_probs=36.6
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
.++..+..+|...|..... ....-.++|..+|++...|+.|...-+.+.+
T Consensus 10 ~L~~~er~il~l~~~l~~~-~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 10 KLSEREAMVLKMRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLK 59 (73)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHhcccC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 4788899999888752100 0123468899999999999999887776666
No 93
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=80.56 E-value=2.5 Score=28.27 Aligned_cols=45 Identities=13% Similarity=0.185 Sum_probs=37.4
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHhcCCChhHHHHhhH
Q psy3429 46 TPFTTQQLLSLEKKFRE-----KQYLSIAERAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~-----~~yps~~~r~~LA~~l~Ls~~qV~~WFq 90 (192)
+.++.+++..+++.|.. +.+.+..+-..+...+|+++..|+.+|.
T Consensus 1 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 50 (92)
T 1fi6_A 1 WKITDEQRQYYVNQFKTIQPDLNGFIPGSAAKEFFTKSKLPILELSHIWE 50 (92)
T ss_dssp CCCCHHHHHHHHHHHTTTCCSTTCEEEHHHHHHHHHHHSSCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 36789999999999963 5688999988888888999988887775
No 94
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=79.96 E-value=2 Score=27.60 Aligned_cols=48 Identities=15% Similarity=0.113 Sum_probs=34.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHH
Q psy3429 48 FTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 48 ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
++..+..+|..+|+ . ....++|..+|++...|+.+..+-+.|.+....
T Consensus 17 L~~~e~~vl~l~~~--g----~s~~eIA~~l~is~~tV~~~~~r~~~kl~~~~~ 64 (79)
T 1x3u_A 17 LSERERQVLSAVVA--G----LPNKSIAYDLDISPRTVEVHRANVMAKMKAKSL 64 (79)
T ss_dssp HCHHHHHHHHHHTT--T----CCHHHHHHHTTSCHHHHHHHHHHHHHHTTCCSH
T ss_pred CCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 56777777776432 2 234689999999999999999877766664433
No 95
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=79.30 E-value=4.3 Score=28.78 Aligned_cols=49 Identities=12% Similarity=0.130 Sum_probs=37.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
.++..|..++...|... ..-.++|..+|++...|+.|...-|.+.++..
T Consensus 22 ~L~~~~r~vl~l~y~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 70 (113)
T 1s7o_A 22 LLTDKQMNYIELYYADD-----YSLAEIADEFGVSRQAVYDNIKRTEKILETYE 70 (113)
T ss_dssp GSCHHHHHHHHHHHHTC-----CCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 46778888887765433 23578899999999999999998888777643
No 96
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=78.84 E-value=2.3 Score=32.76 Aligned_cols=49 Identities=12% Similarity=0.159 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
.++..+..+|...|-.. ..-.++|..+|++...|+.+...-|.+.|+..
T Consensus 187 ~L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l 235 (239)
T 1rp3_A 187 KLPEREKLVIQLIFYEE-----LPAKEVAKILETSVSRVSQLKAKALERLREML 235 (239)
T ss_dssp TSCHHHHHHHHHHHTSC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHhcC-----CCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHH
Confidence 46677777777766322 34678999999999999999988887777644
No 97
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=78.65 E-value=5 Score=27.16 Aligned_cols=49 Identities=18% Similarity=0.295 Sum_probs=35.4
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 43 KPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 43 r~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
.....|+..++.+|...++ .+ ...++|..||+++..|+....+-+.|..
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~~--G~----s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVEK--GF----TNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ----CCCHHHHHHHHHHHT--TC----CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3456799999999988762 22 3678999999999999988876555443
No 98
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=78.51 E-value=3 Score=26.29 Aligned_cols=51 Identities=12% Similarity=0.090 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
.++..+..+|...|..+.+- ...-.++|..+|++...|+.+...-+.|.++
T Consensus 5 ~L~~~er~il~l~~~l~~~~-g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~ 55 (68)
T 2p7v_B 5 GLTAREAKVLRMRFGIDMNT-DYTLEEVGKQFDVTRERIRQIEAKALRKLRH 55 (68)
T ss_dssp CCCHHHHHHHHHHTTTTSSS-CCCHHHHHHHHTCCHHHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHccCCCC-CCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 47888999998887321111 1235778999999999999988766655443
No 99
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=76.86 E-value=4.3 Score=27.81 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcC--CChhHHHHhhH
Q psy3429 43 KPRTPFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLH--LTETQVKIWFQ 90 (192)
Q Consensus 43 r~Rt~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~--Ls~~qV~~WFq 90 (192)
+....++.+++..|.++|. .+.+.+..+-..+...+| +++.+|+.+|+
T Consensus 25 ~~~~~l~~~~~~el~~~F~~~D~d~~G~I~~~El~~~l~~lg~~~~~~ei~~l~~ 79 (100)
T 2lv7_A 25 QRPVDIPEDELEEIREAFKVFDRDGNGFISKQELGTAMRSLGYMPNEVELEVIIQ 79 (100)
T ss_dssp CSCCCCCGGGHHHHHHHHHHTCSSCSSCBCHHHHHHHHHHHTCCCCTTTHHHHHH
T ss_pred cccccCCHHHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 3356789999999999985 457999999999888876 57788888774
No 100
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=76.74 E-value=1.5 Score=29.57 Aligned_cols=48 Identities=23% Similarity=0.202 Sum_probs=36.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
..++..+..+|..+++ .+ .-.++|..+|+++..|+.+..+-+.|.+..
T Consensus 28 ~~Lt~~e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 28 EMLTEREMEILLLIAK--GY----SNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp GGCCSHHHHHHHHHHT--TC----CTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred hcCCHHHHHHHHHHHc--CC----CHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 4588899999988543 22 245789999999999999998777666543
No 101
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=76.58 E-value=3.6 Score=27.62 Aligned_cols=45 Identities=13% Similarity=0.052 Sum_probs=36.9
Q ss_pred CCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcCCChhHHHHhhH
Q psy3429 46 TPFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~Ls~~qV~~WFq 90 (192)
+.++.+++..|++.|. .+.+.+..+-..+...+|+++..|+.+|.
T Consensus 2 w~ls~~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g~~~~~~~~i~~ 51 (95)
T 1c07_A 2 WVVSPAEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTGLPSTLLAHIWS 51 (95)
T ss_dssp CSSCSHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3467889999999985 35689999988888889999988887774
No 102
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=76.11 E-value=7.7 Score=27.32 Aligned_cols=48 Identities=15% Similarity=0.130 Sum_probs=36.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 48 FTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 48 ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
++..+..+|...|... ..-.++|..+|++...|+.+...-|.+.++..
T Consensus 26 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l 73 (113)
T 1xsv_A 26 LTNKQRNYLELFYLED-----YSLSEIADTFNVSRQAVYDNIRRTGDLVEDYE 73 (113)
T ss_dssp SCHHHHHHHHHHHTSC-----CCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHcC-----CCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHH
Confidence 5677777776664332 23578899999999999999998888877654
No 103
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=75.22 E-value=6.1 Score=26.56 Aligned_cols=43 Identities=7% Similarity=0.196 Sum_probs=30.5
Q ss_pred CCCCCHHHHHHHHHHHHhc-CCCCHHHHHHHHHhcCCChhHHHHhhHh
Q psy3429 45 RTPFTTQQLLSLEKKFREK-QYLSIAERAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~~-~yps~~~r~~LA~~l~Ls~~qV~~WFqN 91 (192)
|..|+.++....-..+... .+ ...++|..+|++...|..|...
T Consensus 3 r~~ys~e~k~~~v~~~~~~~g~----s~~~ia~~~gIs~~tl~rW~~~ 46 (97)
T 2jn6_A 3 TKTYSEEFKRDAVALYENSDGA----SLQQIANDLGINRVTLKNWIIK 46 (97)
T ss_dssp CCCCCHHHHHHHHHHHTTGGGS----CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCC----hHHHHHHHHCcCHHHHHHHHHH
Confidence 4578888776554444322 22 3668899999999999999854
No 104
>2rgt_A Fusion of LIM/homeobox protein LHX3, linker, INSU enhancer protein ISL-1; protein-protein complex, LIM domain, Zn finger, activator, D binding; 2.05A {Mus musculus} PDB: 3mmk_A
Probab=75.01 E-value=0.036 Score=42.46 Aligned_cols=30 Identities=7% Similarity=-0.021 Sum_probs=21.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCH
Q psy3429 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSI 68 (192)
Q Consensus 39 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~ 68 (192)
++.||.||.|+.+|+++|++.|+.++|+..
T Consensus 134 ~~~~rprt~~~~~q~~~l~~~f~~~~~~~~ 163 (169)
T 2rgt_A 134 SGGSGGGTPMVAASPERHDGGLQANPVEVQ 163 (169)
T ss_dssp -------EEEECCCCEECCSSCCCCCCCCC
T ss_pred CCCcCCCCcccHHHHHHHHHHHhCCCCccc
Confidence 556789999999999999999999999874
No 105
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=73.07 E-value=5.2 Score=29.79 Aligned_cols=48 Identities=6% Similarity=0.032 Sum_probs=33.9
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 48 FTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 48 ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
++..+..+|...|-.. ..-.++|..+|++...|+.+...-|.+.|+..
T Consensus 141 L~~~~r~vl~l~~~~g-----~s~~EIA~~lgis~~tV~~~l~ra~~~Lr~~l 188 (194)
T 1or7_A 141 LPEDLRMAITLRELDG-----LSYEEIAAIMDCPVGTVRSRIFRAREAIDNKV 188 (194)
T ss_dssp SCHHHHHHHHHHHTTC-----CCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHhHHHHHcC-----CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4555566665544222 23578999999999999999988777776643
No 106
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=72.43 E-value=5.4 Score=26.46 Aligned_cols=52 Identities=8% Similarity=0.085 Sum_probs=37.1
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
.++..+..+|...|-...- ....-.++|..+|++...|+.+...-+.|.|+.
T Consensus 18 ~L~~~er~vl~l~~~l~~~-~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~ 69 (87)
T 1tty_A 18 TLSPREAMVLRMRYGLLDG-KPKTLEEVGQYFNVTRERIRQIEVKALRKLRHP 69 (87)
T ss_dssp TSCHHHHHHHHHHHTTTTS-SCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTT
T ss_pred hCCHHHHHHHHHHHccCCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4678888888888742100 112356789999999999999988777666653
No 107
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=72.18 E-value=3.8 Score=26.98 Aligned_cols=45 Identities=18% Similarity=0.200 Sum_probs=37.3
Q ss_pred CCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcCCChhHHHHhhH
Q psy3429 46 TPFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~Ls~~qV~~WFq 90 (192)
..++.+++..|+..|. .+.+.+..+-..+...+|++..+|+.+|.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g~~~~~~~~~~~ 68 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELRVRPADAEAVFQ 68 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcCcCHHHHHHHHH
Confidence 4577889999999985 35688999999888889999888888875
No 108
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=71.98 E-value=14 Score=25.49 Aligned_cols=54 Identities=11% Similarity=0.092 Sum_probs=38.8
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~ 101 (192)
.++..|..++...|..+.+ ....-.++|..+|++...|+.....-+.+.|+...
T Consensus 19 ~Lp~reR~Vi~Lry~l~~~-e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~ 72 (99)
T 3t72_q 19 GLTAREAKVLRMRFGIDMN-TDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSR 72 (99)
T ss_pred cCCHHHHHHHHHHHhcCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHH
Confidence 4667788888777753211 11346788999999999999998877777776543
No 109
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=70.34 E-value=13 Score=26.94 Aligned_cols=39 Identities=18% Similarity=0.358 Sum_probs=31.8
Q ss_pred CCCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcCCCh
Q psy3429 44 PRTPFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLHLTE 82 (192)
Q Consensus 44 ~Rt~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~Ls~ 82 (192)
+|..+|.+|+..|..+|. .+.+.+..+-..+.+.+|+..
T Consensus 6 ~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~ 49 (153)
T 3i5g_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVP 49 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCC
T ss_pred cccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCc
Confidence 456799999999999996 357899999888888887643
No 110
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=66.96 E-value=15 Score=24.93 Aligned_cols=46 Identities=15% Similarity=0.301 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHH-Hhc-CCCCH-HHHHHHHHhcCCChhHHHHhhH
Q psy3429 45 RTPFTTQQLLSLEKKF-REK-QYLSI-AERAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F-~~~-~yps~-~~r~~LA~~l~Ls~~qV~~WFq 90 (192)
+..|+.++....-..+ ... .|.+. ....++|..+|++...|..|..
T Consensus 4 ~~~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~gIs~~tl~~W~~ 52 (108)
T 2rn7_A 4 NTRFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKIGCTPETLRVWVR 52 (108)
T ss_dssp SCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhcccccccccccHHHHHHHHCcCHHHHHHHHH
Confidence 4568888875444433 322 13332 3567899999999999999974
No 111
>1j7q_A CAVP, calcium vector protein; EF-hand family, calcium binding protein, metal binding protein; NMR {Branchiostoma lanceolatum} SCOP: a.39.1.5 PDB: 1j7r_A
Probab=66.44 E-value=19 Score=22.79 Aligned_cols=46 Identities=9% Similarity=0.109 Sum_probs=34.7
Q ss_pred CCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcC--CChhH---HHHhhH
Q psy3429 45 RTPFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLH--LTETQ---VKIWFQ 90 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~--Ls~~q---V~~WFq 90 (192)
...++.+++..|+..|. .+.+.+..+-..+...+| ++..+ |..+|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~~~~~~~~~~~~~~~~ 60 (86)
T 1j7q_A 5 ARALGPEEKDECMKIFDIFDRNAENIAPVSDTMDMLTKLGQTYTKRETEAIMKEAR 60 (86)
T ss_dssp CCCCSSTHHHHHHHHHHHHSTTTTSCBCHHHHHHHHHHTSCCCSHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 35678889999999985 356899999888888887 45566 666653
No 112
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=66.30 E-value=4.8 Score=24.42 Aligned_cols=43 Identities=19% Similarity=0.113 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 52 QLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 52 Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
|..+|...++ .+ .-.++|..+|+++..|+.+..+-+.|.+...
T Consensus 3 e~~vl~l~~~--g~----s~~eIA~~l~is~~tV~~~~~~~~~kl~~~~ 45 (61)
T 2jpc_A 3 ERQVLKLIDE--GY----TNHGISEKLHISIKTVETHRMNMMRKLQVHK 45 (61)
T ss_dssp HHHHHHHHHT--SC----CSHHHHHHTCSCHHHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHc--CC----CHHHHHHHhCCCHHHHHHHHHHHHHHHCCCC
Confidence 4555655332 22 2368899999999999999987776655433
No 113
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=65.82 E-value=6.7 Score=28.74 Aligned_cols=51 Identities=12% Similarity=0.207 Sum_probs=37.6
Q ss_pred CCCCCCCCHHHHHHHHHHH-HhcCCCCHHHHHHHHH-hc--CCChhHHHHhhHhH
Q psy3429 42 RKPRTPFTTQQLLSLEKKF-REKQYLSIAERAEFSS-SL--HLTETQVKIWFQNR 92 (192)
Q Consensus 42 rr~Rt~ft~~Ql~~Le~~F-~~~~yps~~~r~~LA~-~l--~Ls~~qV~~WFqNr 92 (192)
+++|.++|-+|...+-.++ +.+.-.+..+...+|. ++ +++...|..|..|+
T Consensus 6 ~~~R~~lT~~qK~~i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k 60 (144)
T 1iuf_A 6 KIKRRAITEHEKRALRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSK 60 (144)
T ss_dssp CCSSSCCCSHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHH
T ss_pred CCcCccCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhH
Confidence 5678999999999999998 6777776554444332 55 67888888888653
No 114
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=65.69 E-value=9.8 Score=29.80 Aligned_cols=50 Identities=14% Similarity=0.185 Sum_probs=37.4
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 45 RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
...++..++++|.-.++-. .-.++|..||+++..|+....|-+.|..-..
T Consensus 173 ~~~Lt~~e~~vl~~~~~g~------s~~eIa~~l~is~~tV~~~~~~~~~kl~~~~ 222 (236)
T 2q0o_A 173 KQMLSPREMLCLVWASKGK------TASVTANLTGINARTVQHYLDKARAKLDAES 222 (236)
T ss_dssp GGSCCHHHHHHHHHHHTTC------CHHHHHHHHCCCHHHHHHHHHHHHHHHTCSS
T ss_pred cCCCCHHHHHHHHHHHcCC------CHHHHHHHHCcCHHHHHHHHHHHHHHhCCCC
Confidence 3568999999887754322 3578899999999999999987776655433
No 115
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=65.47 E-value=7.8 Score=30.93 Aligned_cols=52 Identities=17% Similarity=0.054 Sum_probs=40.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHHHH
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAE 103 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~~~ 103 (192)
..++..++.+|.-.+ ..+ .-.|+|..||+++..|++...+-|.|.+.....+
T Consensus 196 ~~L~~~erevl~L~~--~G~----s~~EIA~~L~iS~~TVk~~l~ra~~kL~~~~~~~ 247 (258)
T 3clo_A 196 NILSEREKEILRCIR--KGL----SSKEIAATLYISVNTVNRHRQNILEKLSVGNSIE 247 (258)
T ss_dssp TSSCHHHHHHHHHHH--TTC----CHHHHHHHHTCCHHHHHHHHHHHHHHTTCSSHHH
T ss_pred ccCCHHHHHHHHHHH--cCC----CHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCHHH
Confidence 468999999998864 222 3678899999999999999988887776644333
No 116
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=62.26 E-value=14 Score=28.86 Aligned_cols=49 Identities=6% Similarity=-0.050 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 45 RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
...++..++++|.-.++ . ..-.|+|..||+++..|+...+|-+.|..-.
T Consensus 171 ~~~Lt~~e~~vl~~~~~--g----~s~~eIa~~l~is~~tV~~~~~~~~~kl~~~ 219 (234)
T 1l3l_A 171 AAWLDPKEATYLRWIAV--G----KTMEEIADVEGVKYNSVRVKLREAMKRFDVR 219 (234)
T ss_dssp CCCCCHHHHHHHHHHTT--T----CCHHHHHHHHTCCHHHHHHHHHHHHHHHTCS
T ss_pred CCCCCHHHHHHHHHHHc--C----CCHHHHHHHHCcCHHHHHHHHHHHHHHhCCC
Confidence 45699999999877532 2 2357889999999999999988777665443
No 117
>2qko_A Possible transcriptional regulator, TETR family P; TETR family protein, structural genomics, P protein structure initiative; 2.35A {Rhodococcus SP}
Probab=61.25 E-value=3.1 Score=31.28 Aligned_cols=44 Identities=5% Similarity=-0.000 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
+....+.|.+..|-. ....+||++.|++..-|-.+|.|+..=..
T Consensus 34 l~aa~~lf~~~G~~~-~tv~~IA~~agvs~~t~Y~~F~sK~~Ll~ 77 (215)
T 2qko_A 34 VNAAIEVLAREGARG-LTFRAVDVEANVPKGTASNYFPSRDDLFD 77 (215)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHSSSTTTCHHHHCSCHHHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHcCCCcchHHHhCCCHHHHHH
Confidence 344455588888755 34677899999999999999998654433
No 118
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=60.98 E-value=21 Score=24.66 Aligned_cols=46 Identities=9% Similarity=0.031 Sum_probs=38.3
Q ss_pred CCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHhcCCChhHHHHhhH
Q psy3429 45 RTPFTTQQLLSLEKKFRE----KQYLSIAERAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~----~~yps~~~r~~LA~~l~Ls~~qV~~WFq 90 (192)
.+.++.+++..+++.|.. +.+.+..+-..+-..+|+++..|...|.
T Consensus 6 ~w~ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~gl~~~el~~i~~ 55 (106)
T 1eh2_A 6 PWAVKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSKLPVDILGRVWE 55 (106)
T ss_dssp CCSSCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 467889999999999963 5689999988888889999988887664
No 119
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=60.53 E-value=10 Score=22.42 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhH
Q psy3429 50 TQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 50 ~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFq 90 (192)
.++...+...+. ..+ ...++|+.+|++...|..|+.
T Consensus 18 ~~~~~~i~~l~~-~g~----s~~eIA~~lgis~~TV~~~l~ 53 (55)
T 2x48_A 18 DDLVSVAHELAK-MGY----TVQQIANALGVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHHHH-TTC----CHHHHHHHHTSCHHHHHHHHT
T ss_pred HHHHHHHHHHHH-cCC----CHHHHHHHHCcCHHHHHHHHH
Confidence 555555555443 232 356889999999999999985
No 120
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=60.01 E-value=3.4 Score=30.59 Aligned_cols=27 Identities=11% Similarity=0.124 Sum_probs=22.0
Q ss_pred HHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 72 AEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 72 ~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
.++|..+|+++..|+.+...-|.+.|+
T Consensus 155 ~eIA~~lgis~~tV~~~l~ra~~~Lr~ 181 (184)
T 2q1z_A 155 RELAAETGLPLGTIKSRIRLALDRLRQ 181 (184)
T ss_dssp CCSTTTCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 356778899999999999887777665
No 121
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=59.77 E-value=20 Score=22.48 Aligned_cols=46 Identities=13% Similarity=0.185 Sum_probs=35.6
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHhcC--CChhHHHHhhH
Q psy3429 45 RTPFTTQQLLSLEKKFRE-----KQYLSIAERAEFSSSLH--LTETQVKIWFQ 90 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~-----~~yps~~~r~~LA~~l~--Ls~~qV~~WFq 90 (192)
...++.+++..|+..|.. +.+.+..+-..+...+| ++...|..+|.
T Consensus 5 ~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 57 (85)
T 2ktg_A 5 KKVLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGANPTKQKISEIVK 57 (85)
T ss_dssp CCSSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSSCCCHHHHHHHHH
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 346889999999999953 45788888888877777 56777777774
No 122
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=58.99 E-value=33 Score=22.02 Aligned_cols=57 Identities=19% Similarity=0.117 Sum_probs=38.2
Q ss_pred CCCCCCCCHHHHH-HHHHHHHhc-CCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 42 RKPRTPFTTQQLL-SLEKKFREK-QYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 42 rr~Rt~ft~~Ql~-~Le~~F~~~-~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
++.|...|.+.-. .+++..+.. ..-......++-..-||+..+|+.=.|.-|.+.+|
T Consensus 4 ~k~r~~WT~elH~~Fv~Av~~LG~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l~r 62 (64)
T 1irz_A 4 KKPRVLWTHELHNKFLAAVDHLGVERAVPKKILDLMNVDKLTRENVASHLQKFRVALKK 62 (64)
T ss_dssp CCSSCSSCHHHHHHHHHHHHHHCTTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHS
T ss_pred CCCCCcCCHHHHHHHHHHHHHhCCCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHHHc
Confidence 5667778875533 334443333 12335566677777799999999999998887765
No 123
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=57.60 E-value=6.4 Score=28.92 Aligned_cols=43 Identities=16% Similarity=0.157 Sum_probs=34.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
+..-.+.|.+..| . ....+||++.|++..-|-.+|.|+..=..
T Consensus 21 l~aA~~lf~~~G~-~-~s~~~IA~~agvs~~tlY~~F~sK~~L~~ 63 (194)
T 2q24_A 21 LAAAVRVFSEEGL-D-AHLERIAREAGVGSGTLYRNFPTREALIE 63 (194)
T ss_dssp HHHHHHHHHHHCT-T-CCHHHHHHHTTCCHHHHHHHCCSHHHHHH
T ss_pred HHHHHHHHHhcCc-C-CCHHHHHHHhCCChHHHHHHcCCHHHHHH
Confidence 4444555889999 6 78899999999999999999999755443
No 124
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=56.97 E-value=31 Score=27.69 Aligned_cols=52 Identities=17% Similarity=0.180 Sum_probs=39.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHHH
Q psy3429 45 RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEA 102 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~~ 102 (192)
...+|..++++|.-..+- ....++|..||++++.|+....|-+.|..-....
T Consensus 195 ~~~Lt~re~~vl~~~~~G------~s~~eIA~~l~is~~TV~~~~~~~~~kl~~~~~~ 246 (265)
T 3qp6_A 195 NMPLSQREYDIFHWMSRG------KTNWEIATILNISERTVKFHVANVIRKLNANNRT 246 (265)
T ss_dssp CCCCCHHHHHHHHHHHTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSSHH
T ss_pred cCCCCHHHHHHHHHHHcC------CCHHHHHHHHCcCHHHHHHHHHHHHHHhCCCCHH
Confidence 357899999998877432 2367899999999999999998877776544333
No 125
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=56.91 E-value=32 Score=24.94 Aligned_cols=46 Identities=7% Similarity=-0.019 Sum_probs=30.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHh------cCCChhHHHHhhH
Q psy3429 45 RTPFTTQQLLSLEKKFREKQYLSIAERAE-FSSS------LHLTETQVKIWFQ 90 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~-LA~~------l~Ls~~qV~~WFq 90 (192)
+..++.++...+.+.+..++..+..+..+ |..+ ..++...|..|+.
T Consensus 81 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~ 133 (159)
T 2k27_A 81 PKVATPKVVEKIGDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIR 133 (159)
T ss_dssp CCCCCTTHHHHHHHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHH
Confidence 34677888888888887777667655443 3221 2478888888885
No 126
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=56.74 E-value=17 Score=22.97 Aligned_cols=45 Identities=20% Similarity=0.228 Sum_probs=32.5
Q ss_pred CCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcC-CChhHHHHhhH
Q psy3429 46 TPFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLH-LTETQVKIWFQ 90 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~-Ls~~qV~~WFq 90 (192)
..++.+++..|+..|. .+.+.+..+-..+...+| ++...|..+|.
T Consensus 3 ~~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~ 53 (86)
T 2opo_A 3 AEDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLGSVTPDEVRRMMA 53 (86)
T ss_dssp ---CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTTTCCHHHHHHHHH
T ss_pred ccCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 3578889999999985 356788888888777776 66777777764
No 127
>3lph_A Protein REV; helix-loop-helix, RNA-binding arginine rich motif, protein oligomerization, AIDS, HOST cytoplasm, HOST nucleus; 2.50A {Human immunodeficiency virus type 1}
Probab=56.65 E-value=7.8 Score=25.56 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=22.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEA 102 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~~ 102 (192)
+.+.+-.|+.|+||+..-... | =.|||.+|+..+.+
T Consensus 18 vRiIkiLyQSNP~P~p~GTrq-a-------------RRNRRRRWR~RQrQ 53 (72)
T 3lph_A 18 VRLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQ 53 (72)
T ss_dssp HHHHHHHHHTCCCCCCCSCHH-H-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHccCCCCCCCCchH-H-------------HHHHHHHHHHHHHH
Confidence 344555689999998542222 1 15888888876643
No 128
>2kgr_A Intersectin-1; structure, alternative splicing, calcium, cell junction, cell projection, coiled coil, endocytosis, membrane, phosphoprotein; NMR {Homo sapiens}
Probab=56.37 E-value=17 Score=25.01 Aligned_cols=46 Identities=11% Similarity=0.091 Sum_probs=37.0
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHhcCCChhHHHHhhH
Q psy3429 45 RTPFTTQQLLSLEKKFRE-----KQYLSIAERAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~-----~~yps~~~r~~LA~~l~Ls~~qV~~WFq 90 (192)
-+.++.+++..|+++|.. +.+.+..+-..+....+++...|..+|.
T Consensus 5 ~w~ls~~~~~~l~~~F~~~D~d~dG~I~~~El~~~l~~~~~~~~~~~~i~~ 55 (111)
T 2kgr_A 5 EWAVPQSSRLKYRQLFNSHDKTMSGHLTGPQARTILMQSSLPQAQLASIWN 55 (111)
T ss_dssp CSSSCHHHHHHHHHHHHTTSCSSCCEEEHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHhCCCCHHHHHHHHH
Confidence 356889999999999963 5578888888877778889888887774
No 129
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=56.03 E-value=39 Score=22.01 Aligned_cols=50 Identities=14% Similarity=0.129 Sum_probs=35.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhc-CCChhHHHHhhHh
Q psy3429 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL-HLTETQVKIWFQN 91 (192)
Q Consensus 42 rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l-~Ls~~qV~~WFqN 91 (192)
+-.+..+|.++-..|+.+...-..-....=..||..+ |=+..||+.=|++
T Consensus 15 ~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~vpGRT~~qcr~Ry~~ 65 (73)
T 2cqr_A 15 RSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCVPSKSKEDCIARYKL 65 (73)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGCSSSCHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcCCCCHHHHHHHHHH
Confidence 3446789999999999987764433344445588888 6788888875544
No 130
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=55.74 E-value=7 Score=27.26 Aligned_cols=47 Identities=15% Similarity=0.186 Sum_probs=37.7
Q ss_pred CCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHhcCCChhHHHHhhH
Q psy3429 44 PRTPFTTQQLLSLEKKFRE-----KQYLSIAERAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 44 ~Rt~ft~~Ql~~Le~~F~~-----~~yps~~~r~~LA~~l~Ls~~qV~~WFq 90 (192)
....++.+++..++++|.. +.+.+..+-..+...+|+++..|..+|.
T Consensus 12 ~~~~ls~~~~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~gl~~~el~~i~~ 63 (110)
T 1iq3_A 12 EPWRITEEQREYYVNQFRSLQPDPSSFISGSVAKNFFTKSKLSIPELSYIWE 63 (110)
T ss_dssp SSCCCSSSSHHHHHHHHHHHCCSSSSEEEHHHHHHHCCSSSCSSCCHHHHHH
T ss_pred CCCcCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 3566888888999999863 4688888888888888999888887775
No 131
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=55.03 E-value=3.7 Score=31.44 Aligned_cols=41 Identities=17% Similarity=0.204 Sum_probs=30.6
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 56 LEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 56 Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
..+.|.+..|-... ..+||++.|++..-|-.+|.|+-.=..
T Consensus 52 A~~l~~~~G~~~~t-v~~IA~~AGvs~~t~Y~~F~sKe~Ll~ 92 (229)
T 3bni_A 52 CADLLDEVGYDALS-TRAVALRADVPIGSVYRFFGNKRQMAD 92 (229)
T ss_dssp HHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHhcChhhcc-HHHHHHHHCCCchhHHHHcCCHHHHHH
Confidence 33447888876543 667899999999999999999754433
No 132
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=53.89 E-value=10 Score=27.72 Aligned_cols=48 Identities=8% Similarity=0.045 Sum_probs=34.4
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
..++..+..+|.-. |.....-.|+|..+|+++..|+.+...-|.+.|+
T Consensus 92 ~~Lp~~~r~vl~L~-----~~~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~ 139 (157)
T 2lfw_A 92 ARMTPLSRQALLLT-----AMEGFSPEDAAYLIEVDTSEVETLVTEALAEIEK 139 (157)
T ss_dssp TTSCTTHHHHHTTT-----SSSCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHH-----HHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 34677777777543 3333446889999999999999998766655553
No 133
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=52.65 E-value=22 Score=24.77 Aligned_cols=41 Identities=7% Similarity=0.177 Sum_probs=30.6
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHh
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqN 91 (192)
..++.++...+...+.. .+ ...++|..+|++...|..|++.
T Consensus 5 ~~~s~~~r~~i~~~~~~-G~----s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 5 SALSDTERAQLDVMKLL-NV----SLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCCHHHHHHHHHHHHT-TC----CHHHHHHHHTCCHHHHHHHHHS
T ss_pred ccCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHc
Confidence 45778877766666643 32 2567899999999999999865
No 134
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=51.88 E-value=22 Score=22.71 Aligned_cols=44 Identities=11% Similarity=0.126 Sum_probs=34.4
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcC--CChhHHHHhhH
Q psy3429 47 PFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLH--LTETQVKIWFQ 90 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~--Ls~~qV~~WFq 90 (192)
.++.+++..|...|. .+.+.+..+-..+...+| ++..+|..+|.
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 63 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQNPTKEELDAIIE 63 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 478899999999985 356888888888877776 45777777774
No 135
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=51.84 E-value=28 Score=23.57 Aligned_cols=46 Identities=11% Similarity=-0.126 Sum_probs=29.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcC-------CChhHHHHhhHh
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH-------LTETQVKIWFQN 91 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~-------Ls~~qV~~WFqN 91 (192)
..++.++...+.+....+...+..+......+.| ++...|..|+..
T Consensus 74 ~~l~~~~~~~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~~ 126 (128)
T 1pdn_C 74 RIATPEIENRIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVRG 126 (128)
T ss_dssp CSSCSTHHHHHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC--
T ss_pred CcCCHHHHHHHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHHh
Confidence 4677778888888877777667655444222226 478889988863
No 136
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=51.80 E-value=26 Score=24.45 Aligned_cols=47 Identities=15% Similarity=0.112 Sum_probs=35.6
Q ss_pred CCCCCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHhcC--CChhHHHHhhH
Q psy3429 44 PRTPFTTQQLLSLEKKFRE------KQYLSIAERAEFSSSLH--LTETQVKIWFQ 90 (192)
Q Consensus 44 ~Rt~ft~~Ql~~Le~~F~~------~~yps~~~r~~LA~~l~--Ls~~qV~~WFq 90 (192)
.-..++.+++..|+..|.. +.+.+..+-..+...+| ++...|..+|.
T Consensus 8 ~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 62 (161)
T 1dtl_A 8 AVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMID 62 (161)
T ss_dssp GGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred HHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3456899999999999853 56888888888877776 56667776664
No 137
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=51.75 E-value=6.9 Score=25.06 Aligned_cols=23 Identities=17% Similarity=0.406 Sum_probs=20.6
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||+.+|++...|..|..+++
T Consensus 14 q~~lA~~lgvs~~~is~~e~g~~ 36 (79)
T 3bd1_A 14 VSALAASLGVRQSAISNWRARGR 36 (79)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHTC
T ss_pred HHHHHHHHCCCHHHHHHHHHCCC
Confidence 57899999999999999998765
No 138
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=51.66 E-value=37 Score=23.56 Aligned_cols=47 Identities=15% Similarity=0.362 Sum_probs=35.7
Q ss_pred CCCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcC--CChhHHHHhhH
Q psy3429 44 PRTPFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLH--LTETQVKIWFQ 90 (192)
Q Consensus 44 ~Rt~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~--Ls~~qV~~WFq 90 (192)
.++.++.+++..|...|. .+.+.+..+-..+...+| ++..+|...|.
T Consensus 6 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 59 (153)
T 2ovk_B 6 RRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLK 59 (153)
T ss_dssp -CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 367899999999999996 346899888888777776 45566666654
No 139
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=51.57 E-value=6.2 Score=23.79 Aligned_cols=23 Identities=13% Similarity=0.238 Sum_probs=20.2
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||+.+|++...|..|..+++
T Consensus 17 ~~~lA~~~gis~~~i~~~e~g~~ 39 (66)
T 2xi8_A 17 QSELAALLEVSRQTINGIEKNKY 39 (66)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998754
No 140
>2bnk_A Early protein GP16.7; DNA-binding protein; 2.9A {Bacillus phage PHI29} SCOP: a.251.1.1 PDB: 2c5r_A 1zae_A
Probab=50.81 E-value=45 Score=21.12 Aligned_cols=52 Identities=10% Similarity=0.050 Sum_probs=41.4
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 48 FTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 48 ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
++.-...+|..+=+.+-.....-.++|..+---++..|-.+..|.|+-||-.
T Consensus 5 ls~~e~~vLDlYe~SnIrIP~DIIEdl~~~~L~te~EVmnYiEnqR~~WKLE 56 (67)
T 2bnk_A 5 LSACEVAVLDLYEQSNIRIPSDIIEDLVNQRLQSEQEVLNYIETQRTYWKLE 56 (67)
T ss_dssp CCSSHHHHHHHHHHTTCCCCHHHHHHHHTTCCCCSHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHcCCcCcHHHHHHHHHHhhhhHHHHHHHHHhhHhHHhhh
Confidence 4555667777776777788888899988666568999999999999999854
No 141
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=50.54 E-value=31 Score=24.34 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=33.4
Q ss_pred CCCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHhcCC--ChhHHHHhh
Q psy3429 41 NRKPRTPFTTQQLLSLEKKFRE-----KQYLSIAERAEFSSSLHL--TETQVKIWF 89 (192)
Q Consensus 41 ~rr~Rt~ft~~Ql~~Le~~F~~-----~~yps~~~r~~LA~~l~L--s~~qV~~WF 89 (192)
..+.+..++.+++..|+..|.. +.+.+..+-..+...+|+ +...|...|
T Consensus 15 ~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~ 70 (169)
T 3qrx_A 15 QKKGRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMI 70 (169)
T ss_dssp -----CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHH
T ss_pred ccccCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3455788999999999999963 467888888887777764 455555444
No 142
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=50.45 E-value=16 Score=27.84 Aligned_cols=46 Identities=20% Similarity=0.148 Sum_probs=35.9
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
..+|..+.++|+-..+. ..+++||..++++++.|++...|-|.|..
T Consensus 148 ~~LT~rE~~vL~~l~~g------~s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLSEG------LTNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHHTT------CCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHCC------CCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 45888888888766543 24678999999999999999987776653
No 143
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=50.30 E-value=6.9 Score=23.73 Aligned_cols=23 Identities=9% Similarity=0.343 Sum_probs=20.3
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||+.+|++...|..|..+++
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~ 43 (68)
T 2r1j_L 21 QAALGKMVGVSNVAISQWERSET 43 (68)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCCCHHHHHHHHcCCC
Confidence 56799999999999999998754
No 144
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=50.28 E-value=31 Score=26.98 Aligned_cols=46 Identities=17% Similarity=0.118 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
..+|..++++|.-..+- ....++|..||++++.|+.-..|-+.|..
T Consensus 174 ~~Lt~re~~vl~~~~~G------~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 174 VRLTARETEMLKWTAVG------KTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp CCCCHHHHHHHHHHHTT------CCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHHcC------CCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 45666666666554321 12578899999999999988877665544
No 145
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=49.92 E-value=61 Score=22.95 Aligned_cols=48 Identities=6% Similarity=0.025 Sum_probs=33.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHhc----C--CChhHHHHhhHhH
Q psy3429 45 RTPFTTQQLLSLEKKFREKQYLSIAERAE-FSSSL----H--LTETQVKIWFQNR 92 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~-LA~~l----~--Ls~~qV~~WFqNr 92 (192)
+..++.++...+.+.+..+...+..+..+ |..+. | ++...|..|+...
T Consensus 88 ~~~~~~~~~~~I~~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~~~ 142 (149)
T 1k78_A 88 PKVATPKVVEKIAEYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIRTK 142 (149)
T ss_dssp CSSSCHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHHCC
T ss_pred CCCCCHHHHHHHHHHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHHHH
Confidence 44678888888888888877666554433 22221 4 7889999998654
No 146
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=49.81 E-value=39 Score=23.38 Aligned_cols=49 Identities=12% Similarity=0.110 Sum_probs=36.5
Q ss_pred CCCCCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHhcC--CChhHHHHhhH
Q psy3429 42 RKPRTPFTTQQLLSLEKKFRE-----KQYLSIAERAEFSSSLH--LTETQVKIWFQ 90 (192)
Q Consensus 42 rr~Rt~ft~~Ql~~Le~~F~~-----~~yps~~~r~~LA~~l~--Ls~~qV~~WFq 90 (192)
...+..++.+++..|+..|.. +.+.+..+-..+...+| ++...|+..|.
T Consensus 11 ~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 66 (161)
T 3fwb_A 11 GPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLID 66 (161)
T ss_dssp TTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 344678999999999999963 46888888888777766 45666665553
No 147
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=49.70 E-value=12 Score=23.66 Aligned_cols=42 Identities=10% Similarity=0.075 Sum_probs=32.9
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHH
Q psy3429 45 RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
...++.+.+..+.+.... + ..+||..+|++...|..|-.+++
T Consensus 8 ~~~~~g~~lr~~R~~~gl----t---q~elA~~~gvs~~tis~~E~G~~ 49 (73)
T 3fmy_A 8 AETVAPEFIVKVRKKLSL----T---QKEASEIFGGGVNAFSRYEKGNA 49 (73)
T ss_dssp CCCCCHHHHHHHHHHTTC----C---HHHHHHHHCSCTTHHHHHHTTSS
T ss_pred cCCCCHHHHHHHHHHcCC----C---HHHHHHHhCcCHHHHHHHHcCCC
Confidence 357888888888766432 2 57899999999999999998755
No 148
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=49.57 E-value=33 Score=23.80 Aligned_cols=44 Identities=2% Similarity=0.078 Sum_probs=31.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcC--CChhHHHHhhHhHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH--LTETQVKIWFQNRRA 94 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~--Ls~~qV~~WFqNrR~ 94 (192)
.++.++...+... ..+...+. .+|+..+| ++...|..|+.....
T Consensus 60 ~l~~~~~~~i~~~-~~~~~~s~---~~i~~~lg~~~s~~tV~r~l~~~g~ 105 (141)
T 1u78_A 60 ALSVRDERNVIRA-ASNSCKTA---RDIRNELQLSASKRTILNVIKRSGV 105 (141)
T ss_dssp SSCHHHHHHHHHH-HHHCCCCH---HHHHHHTTCCSCHHHHHHHHHHTC-
T ss_pred cCCHHHHHHHHHH-HhCCCCCH---HHHHHHHCCCccHHHHHHHHHHCCC
Confidence 5788887777766 55555554 45677778 789999999965443
No 149
>2x7l_M HIV REV; nuclear export, immune system, post-transcriptional regulation; 3.17A {Human immunodeficiency virus type 3}
Probab=49.44 E-value=5.1 Score=28.83 Aligned_cols=35 Identities=11% Similarity=0.094 Sum_probs=21.9
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHHHH
Q psy3429 54 LSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEA 102 (192)
Q Consensus 54 ~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~~~ 102 (192)
.+.+-.|+.|+||...=... | =.|||.+||..+.+
T Consensus 16 RiIkiLyQSNPyP~peGTRq-a-------------RRNRRRRWR~RQrQ 50 (115)
T 2x7l_M 16 RLIKFLYQSNPPPNPEGTRQ-A-------------RRNRRRRWRERQRQ 50 (115)
T ss_dssp HHHHHHHHSSCCCCCCCCTT-T-------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCCCCCCchh-h-------------hHhHHHHHHHHHHH
Confidence 44455588999998532111 1 15889998876654
No 150
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=48.51 E-value=17 Score=22.27 Aligned_cols=43 Identities=9% Similarity=0.156 Sum_probs=30.9
Q ss_pred CCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcCC--ChhHHHHhhH
Q psy3429 48 FTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLHL--TETQVKIWFQ 90 (192)
Q Consensus 48 ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~L--s~~qV~~WFq 90 (192)
++.+++..|+..|. .+.+.+..+-..+...+|. +..+|+.+|.
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~ 50 (77)
T 2joj_A 1 LSEEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGFDVKKPEILELMN 50 (77)
T ss_dssp CCHHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTCCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 46788889999885 3457888888887777764 5566666664
No 151
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=48.09 E-value=49 Score=21.44 Aligned_cols=42 Identities=19% Similarity=0.133 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCCHHHHHH-HHHhcCCChhHHHH
Q psy3429 45 RTPFTTQQLLSLEKKFREKQYLSIAERAE-FSSSLHLTETQVKI 87 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~-LA~~l~Ls~~qV~~ 87 (192)
+..+|.++...||++...-.--+. .|.+ +|..+|=+..+|+.
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~-~RW~~IA~~lgRt~~eV~~ 50 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTP-GRWEKIAHELGRSVTDVTT 50 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCT-THHHHHHHHHTSCHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCC-cHHHHHHHHhCCCHHHHHH
Confidence 457999999999999765442222 3444 78888888888875
No 152
>3fiw_A Putative TETR-family transcriptional regulator; TETR-family transcriptional regulator streptomyces, structur genomics, PSI-2; 2.20A {Streptomyces coelicolor}
Probab=48.02 E-value=10 Score=29.04 Aligned_cols=56 Identities=9% Similarity=0.116 Sum_probs=36.0
Q ss_pred CCCCCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 42 RKPRTPFTTQQ-LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 42 rr~Rt~ft~~Q-l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
++.|...+.++ +....+.|....|-. ....+||+++|++..-|-.+|.||..=..-
T Consensus 19 ~~~r~~~tr~~Il~aA~~l~~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~~K~~L~~a 75 (211)
T 3fiw_A 19 FQGMTKMNRETVITEALDLLDEVGLDG-VSTRRLAKRLGVEQPSLYWYFRTKRDLLTA 75 (211)
T ss_dssp -----CCCHHHHHHHHHHHHHHHCGGG-CCHHHHHHHHTSCTHHHHTTCSSHHHHHHH
T ss_pred cccccccCHHHHHHHHHHHHHhcCccc-CCHHHHHHHhCCChhHHHHHcCCHHHHHHH
Confidence 34445556654 344555577777654 336678999999999999999986554443
No 153
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=47.83 E-value=7.4 Score=23.87 Aligned_cols=24 Identities=4% Similarity=0.153 Sum_probs=20.8
Q ss_pred HHHHHHhcCCChhHHHHhhHhHHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRRA 94 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR~ 94 (192)
..+||+.+|++...|..|..+++.
T Consensus 19 q~~lA~~~gis~~~i~~~e~g~~~ 42 (71)
T 1zug_A 19 QTELATKAGVKQQSIQLIEAGVTK 42 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCCC
Confidence 577999999999999999987654
No 154
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=47.25 E-value=8 Score=24.13 Aligned_cols=23 Identities=13% Similarity=0.356 Sum_probs=20.4
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||+.+|++...|..|..+++
T Consensus 26 ~~~lA~~~gis~~~i~~~e~g~~ 48 (76)
T 3bs3_A 26 NRWLAEQMGKSENTISRWCSNKS 48 (76)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56899999999999999998765
No 155
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=46.11 E-value=41 Score=22.67 Aligned_cols=40 Identities=13% Similarity=0.132 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHh
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqN 91 (192)
.++.++...+...+. +.+ + ..++|..+|++...|..|+..
T Consensus 17 ~~s~~~r~~i~~~~~-~g~-s---~~~ia~~lgis~~Tv~~w~~~ 56 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA-DGI-R---PCVISRQLRVSHGCVSKILNR 56 (128)
T ss_dssp CCCHHHHHHHHHHHH-TTC-C---HHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH-cCC-C---HHHHHHHHCcCHHHHHHHHHH
Confidence 577777666666664 332 3 457899999999999999853
No 156
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=46.10 E-value=15 Score=27.17 Aligned_cols=44 Identities=25% Similarity=0.324 Sum_probs=32.7
Q ss_pred CCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcCC--ChhHHHHh
Q psy3429 45 RTPFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLHL--TETQVKIW 88 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~L--s~~qV~~W 88 (192)
++.||.+|+..|+++|. .+.+.+..+-..+...+|+ ++..|...
T Consensus 2 a~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~ 52 (176)
T 2lhi_A 2 SSNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDL 52 (176)
T ss_dssp CCCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred CCcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHH
Confidence 46799999999999985 3568898888887777765 44444433
No 157
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=45.39 E-value=9 Score=23.81 Aligned_cols=24 Identities=8% Similarity=0.329 Sum_probs=20.6
Q ss_pred HHHHHHhcCCChhHHHHhhHhHHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRRA 94 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR~ 94 (192)
..+||+.+|++...|..|..+++.
T Consensus 21 ~~~lA~~~gis~~~i~~~e~g~~~ 44 (76)
T 1adr_A 21 QAALGKMVGVSNVAISQWERSETE 44 (76)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999987543
No 158
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=45.29 E-value=28 Score=25.88 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=37.0
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
..+|..+.++|+-..+.. .+.+||..++++++.|++...|=|.|..-
T Consensus 153 ~~Lt~rE~~vl~~l~~g~------s~~~Ia~~l~is~~TV~~hi~~i~~Kl~~ 199 (215)
T 1a04_A 153 NQLTPRERDILKLIAQGL------PNKMIARRLDITESTVKVHVKHMLKKMKL 199 (215)
T ss_dssp GGSCHHHHHHHHHHHTTC------CHHHHHHHHTCCHHHHHHHHHHHHHHHTC
T ss_pred cCCCHHHHHHHHHHHcCC------CHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 358888888887765432 37889999999999999998887777653
No 159
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=45.20 E-value=9.6 Score=23.78 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.2
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (73)
T 3omt_A 24 NLWLTETLDKNKTTVSKWCTNDV 46 (73)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998763
No 160
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=45.04 E-value=23 Score=22.62 Aligned_cols=23 Identities=4% Similarity=-0.051 Sum_probs=20.4
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|..+++
T Consensus 30 q~~lA~~~gis~~~is~~E~g~~ 52 (86)
T 2ofy_A 30 MVTVAFDAGISVETLRKIETGRI 52 (86)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46899999999999999998765
No 161
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=44.18 E-value=52 Score=23.73 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHh
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqN 91 (192)
..++.++...+...+.. .+ ...++|+.+|++...|..|++.
T Consensus 24 ~~~s~e~r~~ii~l~~~-G~----s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 24 RPLPEVVRQRIVDLAHQ-GV----RPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp CSSCHHHHHHHHHHHHH-TC----CHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHc-CC----CHHHHHHHHCcCHHHHHHHHHH
Confidence 36788877666666643 32 3457899999999999999864
No 162
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=43.97 E-value=36 Score=26.02 Aligned_cols=46 Identities=13% Similarity=0.276 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
+....+.|.+..|-.. ...+||++.|++..-|-.+|.|+..=....
T Consensus 49 l~AA~~lf~~~G~~~~-t~~~IA~~aGvs~~tlY~~F~sK~~L~~~v 94 (255)
T 3g1o_A 49 LATAENLLEDRPLADI-SVDDLAKGAGISRPTFYFYFPSKEAVLLTL 94 (255)
T ss_dssp HHHHHHHHTTSCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHcCCccC-cHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 3334444777776443 366789999999999999999976554443
No 163
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=43.57 E-value=14 Score=24.09 Aligned_cols=28 Identities=18% Similarity=0.230 Sum_probs=22.1
Q ss_pred HHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
..+||+.||++..-|..|..++..-.++
T Consensus 13 ~~~lA~~lGVs~~aVs~W~~g~~iP~~~ 40 (71)
T 2hin_A 13 VEKAAVGVGVTPGAVYQWLQAGEIPPLR 40 (71)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHTSCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHhCCCCCHHH
Confidence 7889999999999999998764433333
No 164
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=43.57 E-value=9.7 Score=23.13 Aligned_cols=24 Identities=13% Similarity=0.216 Sum_probs=20.7
Q ss_pred HHHHHHhcCCChhHHHHhhHhHHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRRA 94 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR~ 94 (192)
..+||..+|++...|..|..+++.
T Consensus 17 q~~lA~~~gis~~~i~~~e~g~~~ 40 (69)
T 1r69_A 17 QAELAQKVGTTQQSIEQLENGKTK 40 (69)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCCC
Confidence 567999999999999999987653
No 165
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=43.25 E-value=11 Score=24.13 Aligned_cols=24 Identities=13% Similarity=0.227 Sum_probs=20.8
Q ss_pred HHHHHHhcCCChhHHHHhhHhHHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRRA 94 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR~ 94 (192)
..+||..+|++...|..|..+++.
T Consensus 28 q~~lA~~~gvs~~~is~~e~g~~~ 51 (80)
T 3kz3_A 28 YESVADKMGMGQSAVAALFNGINA 51 (80)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSSC
T ss_pred HHHHHHHhCcCHHHHHHHHcCCCC
Confidence 467999999999999999987654
No 166
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=42.66 E-value=10 Score=23.69 Aligned_cols=23 Identities=17% Similarity=0.135 Sum_probs=20.2
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (77)
T 2b5a_A 26 QEELADLAGLHRTYISEVERGDR 48 (77)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 56799999999999999998754
No 167
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=41.76 E-value=22 Score=25.66 Aligned_cols=43 Identities=12% Similarity=0.107 Sum_probs=31.9
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 55 SLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 55 ~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
...+.|.+..|-... ..+||+..|++..-|-.+|.|+..=..-
T Consensus 25 aa~~l~~~~G~~~~s-~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 67 (206)
T 3kz9_A 25 IALEVFARRGIGRGG-HADIAEIAQVSVATVFNYFPTREDLVDE 67 (206)
T ss_dssp HHHHHHHHSCCSSCC-HHHHHHHHTSCHHHHHHHCCSHHHHHHH
T ss_pred HHHHHHHhcCccccc-HHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 333448888876544 6678999999999999999997654443
No 168
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=41.49 E-value=37 Score=25.61 Aligned_cols=44 Identities=11% Similarity=0.267 Sum_probs=32.1
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 55 SLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 55 ~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
.-.+.|.+..|-.. ...+||++.|++..-|-.+|.|+..=..-.
T Consensus 52 aA~~lf~e~G~~~~-t~~~IA~~aGvs~~tlY~~F~sK~~L~~a~ 95 (236)
T 3q0w_A 52 TAENLLEDRPLADI-SVDDLAKGAGISRPTFYFYFPSKEAVLLTL 95 (236)
T ss_dssp HHHHHHHHSCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHcCcccC-CHHHHHHHhCCcHHHHHHHCCCHHHHHHHH
Confidence 33444778777543 366779999999999999999986655443
No 169
>2hxi_A Putative transcriptional regulator; structural genomics, APC6293, TET streptomyces coelicolor A3(2), PSI-2; 1.70A {Streptomyces coelicolor}
Probab=41.48 E-value=20 Score=28.02 Aligned_cols=52 Identities=15% Similarity=0.172 Sum_probs=34.1
Q ss_pred CCCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHH
Q psy3429 44 PRTPFTTQQ-LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96 (192)
Q Consensus 44 ~Rt~ft~~Q-l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~ 96 (192)
.|...+.++ +..-.+.|....|-.. ...+||+++|++..-|-.+|.||..=.
T Consensus 25 ~~~~~tr~~Il~aA~~l~~~~G~~~~-s~~~IA~~aGvs~~tlY~hF~~K~~Ll 77 (241)
T 2hxi_A 25 GRRRWSTEQILDAAAELLLAGDAETF-SVRKLAASLGTDSSSLYRHFRNKTELL 77 (241)
T ss_dssp ---CCCHHHHHHHHHHHHSSSSCCCC-CHHHHHHHTTSCHHHHHHHTSSHHHHH
T ss_pred cchhhHHHHHHHHHHHHHHhcCcccC-CHHHHHHHhCcCHHHHHHHcCCHHHHH
Confidence 344566654 3344455777776553 466779999999999999999865443
No 170
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=41.29 E-value=31 Score=30.47 Aligned_cols=48 Identities=19% Similarity=0.263 Sum_probs=37.0
Q ss_pred CCCCCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcCC--ChhHHHHhhH
Q psy3429 43 KPRTPFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLHL--TETQVKIWFQ 90 (192)
Q Consensus 43 r~Rt~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~L--s~~qV~~WFq 90 (192)
..+..|+.+|+..|+++|. .+.+.+..|-..+.+.+|+ ++.+|+..|+
T Consensus 291 Ps~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~ 345 (440)
T 3u0k_A 291 PTRDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMIN 345 (440)
T ss_dssp CBCBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred hhHhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 3467899999999999995 5668899988887777764 5666665553
No 171
>2mys_C Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1m8q_C* 1mvw_C* 1o18_F* 1o19_C* 1o1a_C* 1o1b_C* 1o1c_C* 1o1d_C* 1o1e_C* 1o1f_C* 1o1g_C*
Probab=41.16 E-value=51 Score=22.34 Aligned_cols=43 Identities=9% Similarity=0.213 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcC--CChhHHHHhhH
Q psy3429 48 FTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLH--LTETQVKIWFQ 90 (192)
Q Consensus 48 ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~--Ls~~qV~~WFq 90 (192)
++.+++..|+..|. .+.+.+..+-..+...+| ++..+|..+|.
T Consensus 2 l~~~~~~~l~~~F~~~D~~~~G~i~~~el~~~l~~~~~~~~~~~~~~l~~ 51 (149)
T 2mys_C 2 FSKAAADDFKEAFLLFDRTGDAKITASQVGDIARALGQNPTNAEINKILG 51 (149)
T ss_pred CCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 67888999999984 345788888777766665 45667777764
No 172
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=41.13 E-value=5.7 Score=30.40 Aligned_cols=44 Identities=11% Similarity=0.132 Sum_probs=0.0
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k 95 (192)
.++..+..+|...|- ....-.++|..+|++...|+.++..-|.+
T Consensus 198 ~L~~~~r~vl~l~~~-----~g~s~~EIA~~lgis~~tV~~~~~ra~~~ 241 (243)
T 1l0o_C 198 ELDERERLIVYLRYY-----KDQTQSEVASRLGISQVQMSRLEKKILQH 241 (243)
T ss_dssp -------------------------------------------------
T ss_pred hCCHHHHHHHHHHHh-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 356666666665442 33557789999999999999998765544
No 173
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=41.10 E-value=11 Score=23.22 Aligned_cols=23 Identities=13% Similarity=-0.002 Sum_probs=20.1
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||+.+|++...|..|..+++
T Consensus 29 ~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 29 QETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56799999999999999998753
No 174
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=40.90 E-value=15 Score=23.49 Aligned_cols=23 Identities=9% Similarity=0.284 Sum_probs=20.2
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~i~~~e~g~~ 50 (88)
T 2wiu_B 28 QSELAKKIGIKQATISNFENNPD 50 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHHCGG
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999998754
No 175
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=40.63 E-value=54 Score=23.25 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=30.1
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHh
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqN 91 (192)
..++.++....-..+. ..+ + ..++|+.+|++...|..|+..
T Consensus 31 ~~~s~e~r~~iv~~~~-~G~-s---~~~iA~~lgis~~TV~rw~~~ 71 (149)
T 1k78_A 31 RPLPDVVRQRIVELAH-QGV-R---PCDISRQLRVSHGCVSKILGR 71 (149)
T ss_dssp SCCCHHHHHHHHHHHH-TTC-C---HHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH-cCC-C---HHHHHHHHCcCHHHHHHHHHH
Confidence 3578877766666664 332 2 467899999999999999864
No 176
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=40.48 E-value=11 Score=24.94 Aligned_cols=23 Identities=13% Similarity=0.365 Sum_probs=20.3
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||+.+|++...|..|..+++
T Consensus 25 q~~lA~~~gis~~~is~~e~G~~ 47 (94)
T 2kpj_A 25 QLEIAKSIGVSPQTFNTWCKGIA 47 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSC
T ss_pred HHHHHHHHCcCHHHHHHHHhCCC
Confidence 57799999999999999998754
No 177
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=40.35 E-value=13 Score=24.04 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=20.6
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||+.+|++...|..|..+++
T Consensus 34 q~elA~~~gis~~~is~~e~g~~ 56 (83)
T 2a6c_A 34 QFKAAELLGVTQPRVSDLMRGKI 56 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTCG
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998765
No 178
>3j04_B Myosin regulatory light chain 2, smooth muscle MA isoform; phosphorylation, 2D crystalline arrays, myosin regulation, M light chains, structural protein; 20.00A {Gallus gallus}
Probab=40.20 E-value=50 Score=22.37 Aligned_cols=44 Identities=11% Similarity=0.281 Sum_probs=33.4
Q ss_pred CCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcCC--ChhHHHHhhHh
Q psy3429 48 FTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLHL--TETQVKIWFQN 91 (192)
Q Consensus 48 ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~L--s~~qV~~WFqN 91 (192)
|+.+|+..|+..|. .+.+.+..+-..+...+|+ +...|...|..
T Consensus 1 ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 51 (143)
T 3j04_B 1 FDQSQIQEFKEAFNMIDQNRDGFIDKEDLHDMLASMGKNPTDEYLEGMMSE 51 (143)
T ss_dssp CCHHHHHHHHHHHTTTCSSCTTCCCHHHHHHHHHHTSCCCCHHHHHTTTTT
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 67899999999996 3568999888887777764 56667666644
No 179
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=39.55 E-value=20 Score=26.28 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=31.1
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHH
Q psy3429 56 LEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95 (192)
Q Consensus 56 Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k 95 (192)
-.+.|.+..| . ....+||++.|++..-|-.+|.|+..=
T Consensus 22 A~~lf~~~G~-~-~t~~~IA~~agvs~~tlY~~F~sK~~L 59 (196)
T 2qwt_A 22 AYDTFAAEGL-G-VPMDEIARRAGVGAGTVYRHFPTKQAL 59 (196)
T ss_dssp HHHHHHHTCT-T-SCHHHHHHHTTSCHHHHHHHCSSHHHH
T ss_pred HHHHHHhcCC-C-CCHHHHHHHhCCCHHHHHHHCCCHHHH
Confidence 3445888898 6 678889999999999999999987543
No 180
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=39.54 E-value=55 Score=22.95 Aligned_cols=45 Identities=7% Similarity=0.177 Sum_probs=34.9
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcCC---ChhHHHHhhHh
Q psy3429 47 PFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLHL---TETQVKIWFQN 91 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~L---s~~qV~~WFqN 91 (192)
.++.+++..|+..|. .+.+.+..+-..+...+|+ +..+|..+|.+
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~l~~~ 70 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRLNVKNEELDAMIKE 70 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 578899999999995 3568888888888777765 66777777654
No 181
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=38.48 E-value=1.1e+02 Score=22.28 Aligned_cols=46 Identities=20% Similarity=0.229 Sum_probs=34.9
Q ss_pred CCCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHhcC--CChhHHHHhhH
Q psy3429 45 RTPFTTQQLLSLEKKFRE-----KQYLSIAERAEFSSSLH--LTETQVKIWFQ 90 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~-----~~yps~~~r~~LA~~l~--Ls~~qV~~WFq 90 (192)
...|+.+++..|...|.. +.+.+..+-..+...+| ++..+|...|.
T Consensus 48 ~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~ 100 (196)
T 3dtp_E 48 FAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVA 100 (196)
T ss_dssp SCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCCCHHHHHHHHT
T ss_pred hhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 346899999999999964 56899999888877776 45566665553
No 182
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=38.34 E-value=13 Score=23.27 Aligned_cols=23 Identities=17% Similarity=0.283 Sum_probs=20.5
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|..+++
T Consensus 23 q~~lA~~~gis~~~i~~~e~g~~ 45 (78)
T 3b7h_A 23 INRVATLAGLNQSTVNAMFEGRS 45 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHCTTC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998865
No 183
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=38.12 E-value=48 Score=20.94 Aligned_cols=42 Identities=24% Similarity=0.356 Sum_probs=29.5
Q ss_pred CHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcC--CChhHHHHhhH
Q psy3429 49 TTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLH--LTETQVKIWFQ 90 (192)
Q Consensus 49 t~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~--Ls~~qV~~WFq 90 (192)
+.+++..|...|. .+.+.+..+-..+...+| ++..+|..+|.
T Consensus 4 ~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~ 52 (92)
T 2kn2_A 4 DTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGEKLTDEEVEQMIK 52 (92)
T ss_dssp CCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 4566777777774 345788888888777776 56777776664
No 184
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=37.74 E-value=15 Score=28.38 Aligned_cols=24 Identities=8% Similarity=0.221 Sum_probs=19.8
Q ss_pred HHHHHHHhcCCChhHHHHhhHhHH
Q psy3429 70 ERAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 70 ~r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
...+||+.+|++...|..|..+++
T Consensus 32 t~~~lA~~~gis~~~i~~~~~g~~ 55 (236)
T 3bdn_A 32 SQESVADKMGMGQSGVGALFNGIN 55 (236)
T ss_dssp CSHHHHHHHTSCHHHHHHHTTTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHcCCC
Confidence 356889999999999999997753
No 185
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=37.12 E-value=65 Score=22.26 Aligned_cols=46 Identities=13% Similarity=0.298 Sum_probs=34.6
Q ss_pred CCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcC--CChhHHHHhhHh
Q psy3429 46 TPFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLH--LTETQVKIWFQN 91 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~--Ls~~qV~~WFqN 91 (192)
..++.+++..|+..|. .+.+.+..+-..+...+| ++...|..+|.+
T Consensus 10 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~ 62 (156)
T 1wdc_B 10 TKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE 62 (156)
T ss_dssp --CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHh
Confidence 4688999999999985 356889888888777776 566777777754
No 186
>2gqb_A Conserved hypothetical protein; hypothetical protein conserved unknown protein, structural genomics, PSI; NMR {Rhodopseudomonas palustris} SCOP: a.282.1.1
Probab=36.92 E-value=41 Score=24.62 Aligned_cols=27 Identities=22% Similarity=0.522 Sum_probs=21.4
Q ss_pred CCCHHHHHHHHHhcCCC-----hhHHHHhhHh
Q psy3429 65 YLSIAERAEFSSSLHLT-----ETQVKIWFQN 91 (192)
Q Consensus 65 yps~~~r~~LA~~l~Ls-----~~qV~~WFqN 91 (192)
-.+...|.+||.+||++ ..+..+|...
T Consensus 80 DsSl~~RkeLA~eL~~~~~~~dSA~mNiwLHk 111 (130)
T 2gqb_A 80 DSSLSARKELAKELGYSGDMNDSASMNIWLHK 111 (130)
T ss_dssp CCSHHHHHHHHHHHTCCCSSCHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHhCCCCCCCccHHHHHHHHH
Confidence 35788999999999987 3577789863
No 187
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=36.63 E-value=16 Score=24.04 Aligned_cols=23 Identities=9% Similarity=0.277 Sum_probs=20.3
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||+.+|++...|..|..+++
T Consensus 24 q~~lA~~~gis~~~is~~e~g~~ 46 (94)
T 2ict_A 24 LREFARAMEIAPSTASRLLTGKA 46 (94)
T ss_dssp HHHHHHHHTCCHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 57899999999999999998764
No 188
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=36.49 E-value=14 Score=23.34 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=20.2
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||+.+|++...|..|..+++
T Consensus 18 q~~lA~~~gis~~~i~~~e~g~~ 40 (77)
T 2k9q_A 18 AKSVAEEMGISRQQLCNIEQSET 40 (77)
T ss_dssp HHHHHHHHTSCHHHHHHHHTCCS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 189
>2fq4_A Transcriptional regulator, TETR family; DNA-binding protein, bacillu structural genomics, PSI, protein structure initiative; 1.79A {Bacillus cereus} SCOP: a.4.1.9 a.121.1.1
Probab=35.83 E-value=24 Score=25.69 Aligned_cols=39 Identities=10% Similarity=0.285 Sum_probs=29.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHH
Q psy3429 56 LEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95 (192)
Q Consensus 56 Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k 95 (192)
..+.|.+..|-... ..+||++.|++..-|=.+|.|+-.=
T Consensus 21 A~~lf~e~G~~~~t-~~~IA~~agvsk~tlY~~F~sKe~L 59 (192)
T 2fq4_A 21 SYELLLESGFKAVT-VDKIAERAKVSKATIYKWWPNKAAV 59 (192)
T ss_dssp HHHHHHHHCTTTCC-HHHHHHHHTCCHHHHHHHCSSHHHH
T ss_pred HHHHHHHcCccccc-HHHHHHHcCCCHHHHHHHCCCHHHH
Confidence 33448888876543 6778999999999999999985443
No 190
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=35.46 E-value=16 Score=23.18 Aligned_cols=23 Identities=17% Similarity=0.212 Sum_probs=20.3
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|..+++
T Consensus 26 q~~lA~~~gis~~~i~~~e~g~~ 48 (84)
T 2ef8_A 26 QSELAIFLGLSQSDISKIESFER 48 (84)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCCCHHHHHHHHcCCC
Confidence 56799999999999999998764
No 191
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=35.20 E-value=24 Score=25.63 Aligned_cols=42 Identities=19% Similarity=0.253 Sum_probs=30.8
Q ss_pred CCCHHHHHHHHHHHHh-------cCCCCHHHHHHHHHhcCC--ChhHHHHh
Q psy3429 47 PFTTQQLLSLEKKFRE-------KQYLSIAERAEFSSSLHL--TETQVKIW 88 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~-------~~yps~~~r~~LA~~l~L--s~~qV~~W 88 (192)
-+|.+|+..|+.+|.. +.+.+..+-..+.+.||+ ++.+|+..
T Consensus 2 qLt~eqi~elre~F~~fD~~~d~dG~I~~~El~~~lr~lG~~~t~~el~~~ 52 (159)
T 3i5g_C 2 QLTKDEIEEVREVFDLFDFWDGRDGDVDAAKVGDLLRCLGMNPTEAQVHQH 52 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSSSCEEGGGHHHHHHHTTCCCCHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHCcCCCCCCeECHHHHHHHHHHcCCCCCHHHHHHH
Confidence 4789999999999852 358888888887777775 45555543
No 192
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=35.18 E-value=16 Score=26.82 Aligned_cols=45 Identities=16% Similarity=0.328 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
+....+.|.+..|-. ....+||++.|++..-|-.+|.|+-.=...
T Consensus 37 l~aa~~l~~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~ 81 (218)
T 3dcf_A 37 IKVATELFREKGYYA-TSLDDIADRIGFTKPAIYYYFKSKEDVLFA 81 (218)
T ss_dssp HHHHHHHHHHTCTTT-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCccc-CcHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 344455588888754 336678999999999999999997654443
No 193
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=35.09 E-value=18 Score=22.27 Aligned_cols=19 Identities=16% Similarity=0.454 Sum_probs=17.7
Q ss_pred HHHHHHhcCCChhHHHHhh
Q psy3429 71 RAEFSSSLHLTETQVKIWF 89 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WF 89 (192)
..+||+.+|++..-|..|.
T Consensus 13 q~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 13 QRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp HHHHHHHHTCCHHHHHHCC
T ss_pred HHHHHHHhCCCHHHHHHHH
Confidence 5789999999999999998
No 194
>2rae_A Transcriptional regulator, ACRR family protein; TETR/ACRR family transcriptional regulator, structural genom 2, RHA08332, MCSG; 2.20A {Rhodococcus SP}
Probab=34.98 E-value=26 Score=25.58 Aligned_cols=40 Identities=10% Similarity=0.128 Sum_probs=30.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
+....+.|.+..|-.. ...+||++.|++..-|-..|.|+.
T Consensus 23 l~aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~ 62 (207)
T 2rae_A 23 STVGIELFTEQGFDAT-SVDEVAEASGIARRTLFRYFPSKN 62 (207)
T ss_dssp HHHHHHHHHHHCTTTS-CHHHHHHHTTSCHHHHHHHCSSTT
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCCcchHhhhCCCHH
Confidence 3444455888887553 366789999999999999999864
No 195
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=34.87 E-value=84 Score=19.66 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcC---CChhHHHHhh
Q psy3429 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH---LTETQVKIWF 89 (192)
Q Consensus 38 ~~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~---Ls~~qV~~WF 89 (192)
.+..+++|..||.+.-..|....+....- .=..||..++ =+..||+.-+
T Consensus 3 ~~~~~~~r~~WT~eED~~L~~~v~~~G~~---~W~~Ia~~~~~~~Rt~~qcr~Rw 54 (69)
T 1ity_A 3 EKHRARKRQAWLWEEDKNLRSGVRKYGEG---NWSKILLHYKFNNRTSVMLKDRW 54 (69)
T ss_dssp CTTCSSSCCCCCHHHHHHHHHHHHHHCSS---CHHHHHHHSCCSSCCHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHCCC---cHHHHHHHcCcCCCCHHHHHHHH
Confidence 34556778899999988888776654321 1234566665 3666666533
No 196
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=34.37 E-value=17 Score=23.12 Aligned_cols=23 Identities=17% Similarity=0.137 Sum_probs=20.1
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~e~g~~ 52 (83)
T 3f6w_A 30 QKELAARLGRPQSFVSKTENAER 52 (83)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46899999999999999998764
No 197
>2g7g_A RHA04620, putative transcriptional regulator; helix-turn-helix, structural genomics, PSI, protein structur initiative; 2.01A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=34.32 E-value=20 Score=27.16 Aligned_cols=48 Identities=6% Similarity=0.032 Sum_probs=32.5
Q ss_pred CCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHH
Q psy3429 46 TPFTTQQ-LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96 (192)
Q Consensus 46 t~ft~~Q-l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~ 96 (192)
...+.++ +..-.+.|.... .....+||+++|++..-|-..|.||..=.
T Consensus 9 ~~~~r~~Il~aA~~l~~~~G---~~s~~~IA~~aGvs~~tlY~hF~~K~~Ll 57 (213)
T 2g7g_A 9 ARLDRERIAEAALELVDRDG---DFRMPDLARHLNVQVSSIYHHAKGRAAVV 57 (213)
T ss_dssp --CCHHHHHHHHHHHHHHHS---SCCHHHHHHHTTSCHHHHHTTSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHcC---CCCHHHHHHHhCCCHhHHHHHcCCHHHHH
Confidence 3445544 333445577776 45577889999999999999998855443
No 198
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=34.19 E-value=41 Score=24.77 Aligned_cols=44 Identities=20% Similarity=0.245 Sum_probs=29.5
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 48 FTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 48 ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
+|..+.++|+...+. + ...++|..++++++.|++...|-|.|..
T Consensus 143 Lt~rE~~vl~~l~~g--~----s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 143 LTGREQQVLQLTIRG--L----MNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp SCHHHHHHHHHHTTT--C----CHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHcC--C----cHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 555555555544321 1 2467889999999999988777766654
No 199
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=34.02 E-value=74 Score=27.45 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=34.2
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
.++..+..+|..+|..... ....-+++|..+|++...|+.+...-+.|.|
T Consensus 360 ~L~~rer~Vl~lr~~L~~~-e~~Tl~EIA~~lgiS~erVrqi~~rAl~kLR 409 (423)
T 2a6h_F 360 KLSEREAMVLKLRKGLIDG-REHTLEEVGAFFGVTRERIRQIENKALRKLK 409 (423)
T ss_dssp SSCHHHHHHHHHHHHTTCC------CHHHHSSSSCHHHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHhccCCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 4667777777777652211 2345678999999999999999987777766
No 200
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=33.99 E-value=24 Score=24.79 Aligned_cols=23 Identities=9% Similarity=-0.054 Sum_probs=18.9
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|-.+++
T Consensus 87 q~~la~~~g~s~~~i~~~E~g~~ 109 (133)
T 3o9x_A 87 QKEASEIFGGGVNAFSRYEKGNA 109 (133)
T ss_dssp HHHHHHHHCSCTTHHHHHHHTSS
T ss_pred HHHHHHHHCCCHHHHHHHHCCCC
Confidence 45788888999999999988765
No 201
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=33.64 E-value=33 Score=24.04 Aligned_cols=43 Identities=9% Similarity=-0.015 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHh
Q psy3429 48 FTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 48 ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqN 91 (192)
|+.+|...+++....-.- ......+||..+++.+..++.|+.-
T Consensus 1 ~~~~~~~l~~~i~~~~~~-~p~~~~~la~~~~~~~~~~~~~l~~ 43 (121)
T 2pjp_A 1 FSEEQQAIWQKAEPLFGD-EPWWVRDLAKETGTDEQAMRLTLRQ 43 (121)
T ss_dssp CCHHHHHHHHHHGGGCSS-SCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHh-CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 345665555555332221 2224558999999999999999854
No 202
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=33.53 E-value=71 Score=27.94 Aligned_cols=51 Identities=10% Similarity=0.027 Sum_probs=37.5
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
.++..+..+|..+|..... ....-++||..+|++...|+.+...-+.|.|+
T Consensus 375 ~L~ereR~VI~LRygL~~~-e~~TleEIAe~LgIS~erVRqi~~RAlkKLR~ 425 (438)
T 1l9z_H 375 KLSEREAMVLKLRKGLIDG-REHTLEEVGAYFGVTRERIRQIENKALRKLKY 425 (438)
T ss_pred hCCHHHHHHHHHHHhccCC-CCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHH
Confidence 4677777777777752211 12456789999999999999999888877773
No 203
>2g7l_A TETR-family transcriptional regulator; APC6062, protein structure initiativ midwest center for structural genomics, MCSG; 2.10A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=33.44 E-value=31 Score=26.95 Aligned_cols=53 Identities=8% Similarity=0.139 Sum_probs=34.9
Q ss_pred CCCCCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHH
Q psy3429 42 RKPRTPFTTQQ-LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95 (192)
Q Consensus 42 rr~Rt~ft~~Q-l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k 95 (192)
|..|...+.++ +..-.+.|....|-.. ...+||+++|++..-|-..|.||..=
T Consensus 13 r~~r~~~tr~~Il~AA~~l~~e~G~~~~-S~~~IA~~aGvs~~tlY~hF~sK~~L 66 (243)
T 2g7l_A 13 RPAKPALSRRWIVDTAVALMRAEGLEKV-TMRRLAQELDTGPASLYVYVANTAEL 66 (243)
T ss_dssp ---CCCCCHHHHHHHHHHHHHHHCSSSC-CHHHHHHHTTSCHHHHTTTCCSHHHH
T ss_pred CCCCcccCHHHHHHHHHHHHHhcCchhc-CHHHHHHHHCCChhHHHHHcCCHHHH
Confidence 33445566654 3344555778887543 46678999999999999999885433
No 204
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=33.40 E-value=33 Score=24.91 Aligned_cols=46 Identities=28% Similarity=0.348 Sum_probs=34.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
+....+.|.+..|-... ..+||++.|++..-|-..|.|+..=..-.
T Consensus 22 l~aa~~lf~~~G~~~~t-~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 67 (213)
T 2qtq_A 22 LQTASNIMREGDVVDIS-LSELSLRSGLNSALVKYYFGNKAGLLKAL 67 (213)
T ss_dssp HHHHHHHHHHHTSSCCC-HHHHHHHHCCCHHHHHHHHSSHHHHHHHH
T ss_pred HHHHHHHHHHcCccccc-HHHHHHHhCCChhhHhHhcCCHHHHHHHH
Confidence 44445558888876544 66779999999999999999976554443
No 205
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=33.35 E-value=39 Score=22.45 Aligned_cols=24 Identities=21% Similarity=0.292 Sum_probs=19.9
Q ss_pred HHHHHHHHhcCCChhHHHHhhHhH
Q psy3429 69 AERAEFSSSLHLTETQVKIWFQNR 92 (192)
Q Consensus 69 ~~r~~LA~~l~Ls~~qV~~WFqNr 92 (192)
....+||..+|++++.+...|+..
T Consensus 20 ~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 20 FTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp CCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHHHH
Confidence 457789999999999998888654
No 206
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=32.95 E-value=27 Score=25.72 Aligned_cols=40 Identities=15% Similarity=0.150 Sum_probs=31.0
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHH
Q psy3429 56 LEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96 (192)
Q Consensus 56 Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~ 96 (192)
-.+.|.+..|-... ..+||++.|++..-|-.+|.|+..=.
T Consensus 19 A~~lf~~~G~~~~s-~~~IA~~aGvs~~t~Y~~F~sKe~L~ 58 (210)
T 3vib_A 19 ALETFYRKGIARTS-LNEIAQAAGVTRDALYWHFKNKEDLF 58 (210)
T ss_dssp HHHHHHHHCTTTCC-HHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHhCcccCC-HHHHHHHHCcCHHHHHHHCCCHHHHH
Confidence 33458888886644 66789999999999999999975543
No 207
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=32.91 E-value=23 Score=26.28 Aligned_cols=43 Identities=9% Similarity=0.091 Sum_probs=32.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 54 LSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 54 ~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
..-.+.|.+.. ......+||++.|++..-|-.+|.|+..=...
T Consensus 27 ~aA~~lf~~~G--~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a 69 (215)
T 2hku_A 27 TAATELFLEHG--EGVPITQICAAAGAHPNQVTYYYGSKERLFVE 69 (215)
T ss_dssp HHHHHHHHHHC--TTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHhC--CCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 33344477777 66668889999999999999999997655443
No 208
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=32.50 E-value=24 Score=25.47 Aligned_cols=46 Identities=4% Similarity=-0.059 Sum_probs=35.9
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
+..-.+.|.+..|- ....+||++.|++..-|-..|.||..=.....
T Consensus 15 l~aA~~lf~~~G~~--~t~~~IA~~aGvs~~tly~~F~sK~~L~~~~~ 60 (190)
T 3jsj_A 15 LEAAAALTYRDGVG--IGVEALCKAAGVSKRSMYQLFESKDELLAASL 60 (190)
T ss_dssp HHHHHHHHHHHCTT--CCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHH
T ss_pred HHHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHH
Confidence 44455558888887 66788899999999999999999766555443
No 209
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=32.49 E-value=19 Score=23.40 Aligned_cols=23 Identities=9% Similarity=0.228 Sum_probs=20.2
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|..+++
T Consensus 33 q~~lA~~~gis~~~is~~e~g~~ 55 (92)
T 1lmb_3 33 QESVADKMGMGQSGVGALFNGIN 55 (92)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998754
No 210
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=32.47 E-value=28 Score=23.38 Aligned_cols=38 Identities=16% Similarity=0.135 Sum_probs=29.0
Q ss_pred HHHHHHHHH-----hcCCCCHHHHHHHHHhcCCChhHHHHhhH
Q psy3429 53 LLSLEKKFR-----EKQYLSIAERAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 53 l~~Le~~F~-----~~~yps~~~r~~LA~~l~Ls~~qV~~WFq 90 (192)
...|+++|. .+.+.+..+-..+...+|+++.+|..+|.
T Consensus 10 ~~~~~~~F~~~D~d~dG~Is~~el~~~l~~~~l~~~~l~~i~~ 52 (99)
T 1qjt_A 10 NPVYEKYYRQVEAGNTGRVLALDAAAFLKKSGLPDLILGKIWD 52 (99)
T ss_dssp CTHHHHHHHHHCCTTSSCCCSHHHHHHHHTSSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 345666664 35689999988888889999988888775
No 211
>2jml_A DNA binding domain/transcriptional regulator; anti-repressor, MERR, carotenogenesis; HET: DNA; NMR {Myxococcus xanthus}
Probab=32.26 E-value=28 Score=22.55 Aligned_cols=20 Identities=10% Similarity=0.285 Sum_probs=17.3
Q ss_pred HHHHHHhcCCChhHHHHhhH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFq 90 (192)
..++|+.+|++...|+.|-+
T Consensus 8 i~e~A~~~gvs~~tlR~ye~ 27 (81)
T 2jml_A 8 IRTIARMTGIREATLRAWER 27 (81)
T ss_dssp HHHHHHTTSTTHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHH
Confidence 45789999999999999954
No 212
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=32.15 E-value=71 Score=21.94 Aligned_cols=43 Identities=19% Similarity=0.247 Sum_probs=29.8
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcC--CChhHHHHhh
Q psy3429 47 PFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLH--LTETQVKIWF 89 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~--Ls~~qV~~WF 89 (192)
.++.+++..|...|. .+.+.+..+-..+...+| ++...|+.+|
T Consensus 3 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~l~ 52 (148)
T 1exr_A 3 QLTEEQIAEFKEAFALFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 52 (148)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 478889999998885 345777777777766665 3555565554
No 213
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=32.05 E-value=23 Score=26.51 Aligned_cols=44 Identities=9% Similarity=0.096 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 54 LSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 54 ~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
..-.+.|.+..|-... ..+||++.|++..-|-.+|.|+-.=..-
T Consensus 42 ~aA~~lf~~~G~~~~t-~~~IA~~AGvs~~tlY~~F~sKe~L~~~ 85 (221)
T 3g7r_A 42 GTATRIFYAEGIHSVG-IDRITAEAQVTRATLYRHFSGKDDLILA 85 (221)
T ss_dssp HHHHHHHHHHCSTTSC-HHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHhCcccCC-HHHHHHHhCCCHHHHHHHCCCHHHHHHH
Confidence 3334448888876543 6678999999999999999997654443
No 214
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=32.04 E-value=94 Score=22.17 Aligned_cols=46 Identities=13% Similarity=0.264 Sum_probs=35.9
Q ss_pred CCCCCCCHHHHHHHHHHHHh----cCCCCHHHHHHHHHhcCCChhHHH-Hh
Q psy3429 43 KPRTPFTTQQLLSLEKKFRE----KQYLSIAERAEFSSSLHLTETQVK-IW 88 (192)
Q Consensus 43 r~Rt~ft~~Ql~~Le~~F~~----~~yps~~~r~~LA~~l~Ls~~qV~-~W 88 (192)
...+.++.+++..+++.|.. +.|.+..+-..+-.+.||+...+. +|
T Consensus 22 ~~~W~it~ee~~~y~~iF~~lD~~dG~Isg~elr~~~~~sgLp~~~L~~Iw 72 (121)
T 3fia_A 22 LDTWAITVEERAKHDQQFHSLKPISGFITGDQARNFFFQSGLPQPVLAQIW 72 (121)
T ss_dssp TTTSCCCHHHHHHHHHHHHHTCCBTTBEEHHHHHHHHGGGCCCHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHhCCCCCeECHHHHHHHHHHcCCCHHHHHHHH
Confidence 34688999999999999974 457788888887778899876654 45
No 215
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=32.01 E-value=28 Score=21.69 Aligned_cols=21 Identities=5% Similarity=0.313 Sum_probs=18.0
Q ss_pred HHHHHHhcCCChhHHHHhhHh
Q psy3429 71 RAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqN 91 (192)
..++|..||++...|..|-.+
T Consensus 5 ~~e~a~~LgvS~~Tl~rw~~~ 25 (68)
T 1j9i_A 5 KKQLADIFGASIRTIQNWQEQ 25 (68)
T ss_dssp HHHHHHHTTCCHHHHHHHTTT
T ss_pred HHHHHHHHCcCHHHHHHHHHC
Confidence 467899999999999999754
No 216
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=31.94 E-value=21 Score=23.27 Aligned_cols=23 Identities=4% Similarity=0.170 Sum_probs=20.2
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|..+++
T Consensus 29 q~~lA~~~gis~~~is~~e~g~~ 51 (91)
T 1x57_A 29 QKDLATKINEKPQVIADYESGRA 51 (91)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998764
No 217
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=31.38 E-value=1.2e+02 Score=20.38 Aligned_cols=44 Identities=14% Similarity=0.258 Sum_probs=32.0
Q ss_pred CCCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcC--CChhHHHHhh
Q psy3429 46 TPFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLH--LTETQVKIWF 89 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~--Ls~~qV~~WF 89 (192)
..++.+++..|+..|. .+.+.+..+-..+...+| ++...|...|
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~l~ 53 (153)
T 3ox6_A 3 RSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGYMPTEMELIELS 53 (153)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 3588999999999985 356899888888777765 3555555444
No 218
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=31.31 E-value=74 Score=21.41 Aligned_cols=44 Identities=23% Similarity=0.244 Sum_probs=30.0
Q ss_pred CCCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHhcC--CChhHHHHhh
Q psy3429 46 TPFTTQQLLSLEKKFRE-----KQYLSIAERAEFSSSLH--LTETQVKIWF 89 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~-----~~yps~~~r~~LA~~l~--Ls~~qV~~WF 89 (192)
+.++.+++..|+..|.. +.+.+..+-..+...+| ++...|...|
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 53 (147)
T 4ds7_A 3 QNLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLM 53 (147)
T ss_dssp -CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 35788999999999853 45777777777666665 4455555444
No 219
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=31.07 E-value=38 Score=25.45 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 52 QLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 52 Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
=+....+.|.+..|-.. ...+||++.|++..-|-..|.|+..=..-
T Consensus 35 Il~aA~~lf~~~G~~~~-t~~~IA~~Agvs~~t~Y~~F~sKe~Ll~~ 80 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGT-SMEHLSKAAGISKSSIYHHVTGKEELLRR 80 (230)
T ss_dssp HHHHHHHHHHHHCTTTC-CHHHHHHHHTSCHHHHTTTCSSHHHHHHH
T ss_pred HHHHHHHHHHHcCcccc-CHHHHHHHHCCChhHHHHhCCCHHHHHHH
Confidence 35666677888887653 36678999999999999999987554443
No 220
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=30.80 E-value=20 Score=26.20 Aligned_cols=43 Identities=9% Similarity=0.094 Sum_probs=33.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
+..-.+.|.+..| . ....+||++.|++..-|-..|.|+-.=..
T Consensus 22 l~aA~~lf~~~G~-~-~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~ 64 (199)
T 2rek_A 22 IEAAAAEVARHGA-D-ASLEEIARRAGVGSATLHRHFPSRWGLLQ 64 (199)
T ss_dssp HHHHHHHHHHHGG-G-CCHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHhcCC-C-CCHHHHHHHhCCchHHHHHHCCCHHHHHH
Confidence 3344455889999 6 57889999999999999999998754433
No 221
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=30.56 E-value=19 Score=24.04 Aligned_cols=23 Identities=9% Similarity=0.205 Sum_probs=20.6
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||+.+|++...|..|..+++
T Consensus 40 q~eLA~~~GiS~~tis~iE~G~~ 62 (88)
T 3t76_A 40 KGELREAVGVSKSTFAKLGKNEN 62 (88)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 57899999999999999998854
No 222
>2wui_A MEXZ, transcriptional regulator; gene regulation, transcription regulation, TETR, DNA-binding transcription; 2.90A {Pseudomonas aeruginosa}
Probab=30.52 E-value=45 Score=24.56 Aligned_cols=40 Identities=20% Similarity=0.204 Sum_probs=30.5
Q ss_pred HHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 57 EKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 57 e~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
.+.|.++.|-... ..+||++.|++..-|-.+|.|+..=..
T Consensus 21 ~~lf~~~G~~~~s-~~~IA~~aGvskgtlY~~F~sKe~L~~ 60 (210)
T 2wui_A 21 ERVFLEKGVGTTA-MADLADAAGVSRGAVYGHYKNKIEVCL 60 (210)
T ss_dssp HHHHHHSCTTTCC-HHHHHHHHTSCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHcCccccC-HHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 3448888876543 667799999999999999998655433
No 223
>2kz5_A Transcription factor NF-E2 45 kDa subunit; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Homo sapiens}
Probab=29.75 E-value=1.1e+02 Score=20.83 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=23.0
Q ss_pred CCCHHHHHHHHHhcCCChhHHHH-hhHhHHHHHH
Q psy3429 65 YLSIAERAEFSSSLHLTETQVKI-WFQNRRAKAK 97 (192)
Q Consensus 65 yps~~~r~~LA~~l~Ls~~qV~~-WFqNrR~k~k 97 (192)
+....+-.+|....+|++.|+.. |-..||.|.|
T Consensus 42 ~lpv~efn~ll~~~~Ls~~Ql~lIrdiRRRgKNK 75 (91)
T 2kz5_A 42 NLPVDDFNELLARYPLTESQLALVRDIRRRGKNK 75 (91)
T ss_dssp HSCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred HCcHHHHHHHHHHcCCCHHHHHHHHHHHHHhhhH
Confidence 34567777888889999988764 5555555543
No 224
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=29.67 E-value=21 Score=22.77 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=19.1
Q ss_pred HHHHHHhcCCChhHHHHhhHh
Q psy3429 71 RAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqN 91 (192)
..+||..+|++...|..|-.+
T Consensus 26 q~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 26 LSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467899999999999999987
No 225
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=29.61 E-value=21 Score=22.62 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.0
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|-.+++
T Consensus 27 q~~lA~~~gis~~~i~~~e~g~~ 49 (82)
T 3s8q_A 27 QEDLAYKSNLDRTYISGIERNSR 49 (82)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 56899999999999999998753
No 226
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=29.30 E-value=27 Score=21.21 Aligned_cols=23 Identities=9% Similarity=0.014 Sum_probs=19.8
Q ss_pred HHHHHHhcC--CChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLH--LTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~--Ls~~qV~~WFqNrR 93 (192)
..+||..+| ++...|..|..+++
T Consensus 24 q~~lA~~~g~~is~~~i~~~e~g~~ 48 (71)
T 2ewt_A 24 LHGVEEKSQGRWKAVVVGSYERGDR 48 (71)
T ss_dssp HHHHHHHTTTSSCHHHHHHHHHTCS
T ss_pred HHHHHHHHCCcCCHHHHHHHHCCCC
Confidence 467999999 99999999998754
No 227
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=29.21 E-value=1.5e+02 Score=21.31 Aligned_cols=43 Identities=7% Similarity=0.071 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHHHh----cCCCCHHHHHHHHHhcCCChhHHHHhhHhHH
Q psy3429 48 FTTQQLLSLEKKFRE----KQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 48 ft~~Ql~~Le~~F~~----~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
++..++..|-..+.. +.+|+. ++||..+|++...|...+++--
T Consensus 30 Ls~~E~~lLl~L~~~~~~g~~~ps~---~~LA~~~~~s~~~v~~~L~~L~ 76 (135)
T 2v79_A 30 LNETELILLLKIKMHLEKGSYFPTP---NQLQEGMSISVEECTNRLRMFI 76 (135)
T ss_dssp CCHHHHHHHHHHHHHHTTTCCSCCH---HHHHTTSSSCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCH---HHHHHHHCcCHHHHHHHHHHHH
Confidence 566676666666543 456775 5799999999999998887543
No 228
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=28.87 E-value=21 Score=23.44 Aligned_cols=23 Identities=9% Similarity=0.141 Sum_probs=20.3
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|..+++
T Consensus 20 q~~lA~~~gis~~~is~~e~g~~ 42 (99)
T 2l49_A 20 RQQLADLTGVPYGTLSYYESGRS 42 (99)
T ss_dssp HHHHHHHHCCCHHHHHHHTTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998754
No 229
>2zcx_A SCO7815, TETR-family transcriptional regulator; helix-turn-helix, DNA-binding, transcription regulation; 2.22A {Streptomyces coelicolor}
Probab=28.67 E-value=72 Score=24.15 Aligned_cols=46 Identities=9% Similarity=0.163 Sum_probs=34.2
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 54 LSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 54 ~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
....+.|.+..|-.. ...+||++.|++..-|-.+|.|+..=.....
T Consensus 30 ~aA~~lf~~~G~~~~-s~~~IA~~agvs~~tlY~~F~sKe~L~~av~ 75 (231)
T 2zcx_A 30 DAARELGTERGIREI-TLTDIAATVGMHKSALLRYFETREQIFLKIT 75 (231)
T ss_dssp HHHHHHHHHHCSTTC-CHHHHHHHHTSCHHHHHHHCSSHHHHHHHHH
T ss_pred HHHHHHHHhCCcccC-CHHHHHHHhCCCHHHHHHhCCCHHHHHHHHH
Confidence 344455888887653 3667899999999999999999866555443
No 230
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=28.43 E-value=78 Score=21.57 Aligned_cols=41 Identities=10% Similarity=0.185 Sum_probs=26.8
Q ss_pred CCCCCHHHH-HHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhH
Q psy3429 45 RTPFTTQQL-LSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 45 Rt~ft~~Ql-~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFq 90 (192)
+..++.+.. .++++.+.-. ....++|+..+|+..+|..|-.
T Consensus 30 ~rrWs~~~Kl~VV~~~~~g~-----~s~~e~arry~Is~s~i~~W~r 71 (95)
T 2jrt_A 30 TRRWVASRKAAVVKAVIHGL-----ITEREALDRYSLSEEEFALWRS 71 (95)
T ss_dssp CCCCCHHHHHHHHHHHHTTS-----SCHHHHHHHTTCCHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHcCC-----CCHHHHHHHhCCCHHHHHHHHH
Confidence 344666653 3444443222 2356889999999999999964
No 231
>2hxo_A Putative TETR-family transcriptional regulator; TETR transcriptional regulator, structural genomics, PSI-2, structure initiative; 2.40A {Streptomyces coelicolor}
Probab=28.36 E-value=31 Score=26.77 Aligned_cols=56 Identities=4% Similarity=0.029 Sum_probs=35.0
Q ss_pred CCCCCCCCHHH-HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 42 RKPRTPFTTQQ-LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 42 rr~Rt~ft~~Q-l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
|+.|...+.++ +..-.+.|....|-.. ...+||+++|++..-|-..|.||..=..-
T Consensus 10 r~~~~~~~r~~Il~aA~~l~~~~G~~~~-s~~~IA~~aGvs~~tlY~hF~~K~~Ll~~ 66 (237)
T 2hxo_A 10 ERRQEPLSRERIVGAAVELLDTVGERGL-TFRALAERLATGPGAIYWHITGKAELLGA 66 (237)
T ss_dssp ------CCHHHHHHHHHHHHHHTTTTTC-CHHHHHHHHTSCGGGGGGTCCCHHHHHHH
T ss_pred CCCCCccCHHHHHHHHHHHHHhcCcccC-CHHHHHHHHCCChHHHHHhcCCHHHHHHH
Confidence 34445566654 3444555777776553 36677999999999999999986544433
No 232
>3gyk_A 27KDA outer membrane protein; APC61738.2, silicibacter pomeroyi DSS-3, thioredoxin-like, oxidoreductase, structural genomics, PSI-2; HET: MSE; 1.76A {Silicibacter pomeroyi}
Probab=28.13 E-value=1.6e+02 Score=20.89 Aligned_cols=44 Identities=7% Similarity=-0.119 Sum_probs=34.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~ 96 (192)
....+..|......+.....++|.++||....+..++.+...+.
T Consensus 85 ~~~~~~lf~~~~~~~~~~l~~~a~~~Gld~~~~~~~~~~~~~~~ 128 (175)
T 3gyk_A 85 EAFHWALMGMSGKANETGVLRIAREVGLDTEQLQRDMEAPEVTA 128 (175)
T ss_dssp HHHHHHHHTCSSCCSHHHHHHHHHHTTCCHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHhChHHHH
Confidence 34456668777777888899999999999999999987765543
No 233
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=28.11 E-value=22 Score=25.60 Aligned_cols=45 Identities=11% Similarity=0.118 Sum_probs=33.6
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
+....+.|....|-... ..+||++.|++..-|-.+|.|+..=..-
T Consensus 16 l~aa~~lf~~~G~~~~t-~~~IA~~agvs~~tlY~~F~sK~~L~~~ 60 (197)
T 3rd3_A 16 LDTGYRIMAVKGFSGVG-LNEILQSAGVPKGSFYHYFKSKEQFGQA 60 (197)
T ss_dssp HHHHHHHHHHHCSTTCC-HHHHHHHHTCCHHHHTTTCSCHHHHHHH
T ss_pred HHHHHHHHHHCCcccCC-HHHHHHHhCCChhhHHHHcCCHHHHHHH
Confidence 44455558888876543 5678999999999999999998664443
No 234
>1s6c_A KV4 potassium channel-interacting protein kchip1B; EF-hand, transport protein; 2.00A {Rattus norvegicus} SCOP: a.39.1.5 PDB: 2nz0_A 2i2r_E
Probab=28.05 E-value=1e+02 Score=21.90 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=31.8
Q ss_pred CCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHhcC---CChhHHHHhhH
Q psy3429 46 TPFTTQQLLSLEKKFRE---KQYLSIAERAEFSSSLH---LTETQVKIWFQ 90 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~---~~yps~~~r~~LA~~l~---Ls~~qV~~WFq 90 (192)
+.|+.+++..|.+.|.. +.+.+..+-..+...++ .+...|+..|+
T Consensus 13 ~~~s~~~i~~l~~~fd~~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~ 63 (183)
T 1s6c_A 13 TNFTKRELQVLYRGFKNEXPSGVVNEETFKQIYAQFFPHGDASTYAHYLFN 63 (183)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTSEECHHHHHHHHHHHSTTSCCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 46889999999999976 34777777777666654 34556655553
No 235
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=27.89 E-value=42 Score=24.61 Aligned_cols=44 Identities=16% Similarity=0.200 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
+....+.|.+..|-.. ...+||++.|++..-|-.+|.|+..=..
T Consensus 36 l~aA~~l~~~~G~~~~-t~~~IA~~aGvs~~t~Y~~F~sK~~L~~ 79 (222)
T 3bru_A 36 IRAGLEHLTEKGYSSV-GVDEILKAARVPKGSFYHYFRNKADFGL 79 (222)
T ss_dssp HHHHHHHHHHSCTTTC-CHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHcCCCcC-cHHHHHHHhCCCcchhhhhCCCHHHHHH
Confidence 3334444888887553 3667899999999999999999765443
No 236
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=27.81 E-value=1.2e+02 Score=21.32 Aligned_cols=46 Identities=11% Similarity=0.185 Sum_probs=33.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhc-CCChhHHHHhhHh
Q psy3429 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL-HLTETQVKIWFQN 91 (192)
Q Consensus 42 rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l-~Ls~~qV~~WFqN 91 (192)
..+|..||.++...|....+.... .=..+|..+ |=+..||+.-+.|
T Consensus 8 ~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~~Rt~~qcr~Rw~~ 54 (126)
T 3osg_A 8 AAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFPNRNARQCRDRWKN 54 (126)
T ss_dssp BCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCTTCCHHHHHHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcCCCCHHHHHHHHhh
Confidence 455678999999999998876553 234567777 6688888876555
No 237
>1y66_A Engrailed homeodomain; protein design, dioxane, de novo protein; 1.65A {Escherichia coli} PDB: 2p6j_A
Probab=27.60 E-value=18 Score=21.53 Aligned_cols=38 Identities=18% Similarity=0.354 Sum_probs=25.6
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHh
Q psy3429 54 LSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 54 ~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqN 91 (192)
+.|.......+-.....-.+.|.+|||+..-|..+|..
T Consensus 10 rklkefvrrhqeitqetlheyaqklglnqqaieqffre 47 (52)
T 1y66_A 10 RKLKEFVRRHQEITQETLHEYAQKLGLNQQAIEQFFRE 47 (52)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 34444434444455566677899999999889888854
No 238
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=27.25 E-value=40 Score=23.58 Aligned_cols=43 Identities=16% Similarity=0.236 Sum_probs=29.3
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcCC--ChhHHHHhh
Q psy3429 47 PFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLHL--TETQVKIWF 89 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~L--s~~qV~~WF 89 (192)
-||.+|+..|+.+|. .+.+.+..+-..+...+|. +...|...|
T Consensus 3 ~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~ 52 (148)
T 2lmt_A 3 ELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLI 52 (148)
T ss_dssp SCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCchHHHHHHHH
Confidence 488999999999985 3457777777776666654 445554443
No 239
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=26.70 E-value=29 Score=23.59 Aligned_cols=23 Identities=9% Similarity=0.247 Sum_probs=20.2
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|-.+++
T Consensus 25 q~~lA~~~gis~~~i~~~e~g~~ 47 (114)
T 3op9_A 25 NHQIAELLNVQTRTVAYYMSGET 47 (114)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56799999999999999998764
No 240
>1etf_B REV peptide; complex (RNA/peptide), export regulator, mRNA splicing, transcription regulation, viral protein/RNA complex; NMR {Human immunodeficiency virus 1} SCOP: j.9.2.1 PDB: 1etg_B
Probab=26.40 E-value=47 Score=17.50 Aligned_cols=12 Identities=33% Similarity=0.479 Sum_probs=8.4
Q ss_pred HhHHHHHHHHHH
Q psy3429 90 QNRRAKAKRLQE 101 (192)
Q Consensus 90 qNrR~k~kr~~~ 101 (192)
.|||.+|+..+.
T Consensus 7 RnRRRRWR~Rq~ 18 (26)
T 1etf_B 7 RNRRRRWRERQR 18 (26)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhHHHHHHHHHH
Confidence 478888876554
No 241
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.40 E-value=1.2e+02 Score=18.70 Aligned_cols=46 Identities=9% Similarity=-0.001 Sum_probs=32.0
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHH
Q psy3429 44 PRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 44 ~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
+|..||.++-..|....+.... .=..+|...|=+..||+.-|+|--
T Consensus 8 ~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~gRt~~qcr~Rw~~~l 53 (66)
T 2din_A 8 KKTEWSREEEEKLLHLAKLMPT----QWRTIAPIIGRTAAQCLEHYEFLL 53 (66)
T ss_dssp SCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHHSSCHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHcCC----CHHHHhcccCcCHHHHHHHHHHHh
Confidence 3568999998888888665442 234466666888889887665543
No 242
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=26.40 E-value=32 Score=20.79 Aligned_cols=20 Identities=5% Similarity=0.297 Sum_probs=17.4
Q ss_pred HHHHHHhcCCChhHHHHhhH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFq 90 (192)
..++|+.+|++...|..|..
T Consensus 16 ~~~~A~~lgis~~~vs~~~~ 35 (67)
T 2pij_A 16 QSALAAALGVNQSAISQMVR 35 (67)
T ss_dssp HHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHCcCHHHHHHHHc
Confidence 45789999999999999984
No 243
>2i10_A Putative TETR transcriptional regulator; structural genomics, APC5890, TETR family, PSI-2, protein ST initiative; HET: MSE NPO PGE; 2.05A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=26.39 E-value=61 Score=23.73 Aligned_cols=44 Identities=14% Similarity=0.218 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
+..-.+.|.+..|-.. ...+||+..|++..-|-.+|.|+..=..
T Consensus 17 l~aA~~lF~~~Gy~~t-s~~~IA~~aGvsk~tlY~~F~sKe~L~~ 60 (202)
T 2i10_A 17 LQTAMELFWRQGYEGT-SITDLTKALGINPPSLYAAFGSKRDLFE 60 (202)
T ss_dssp HHHHHHHHHHHTTTTC-CHHHHHHHHTCCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHhCcccC-CHHHHHHHhCCChHHHHHHhCCHHHHHH
Confidence 3444455888888653 3677899999999999999998755433
No 244
>3kkd_A Transcriptional regulator; TETR, structural genomics, PSI-2, structure initiative, midwest center for structural genomic DNA-binding; HET: PGE 15P; 2.10A {Pseudomonas aeruginosa PAO1}
Probab=26.22 E-value=18 Score=27.37 Aligned_cols=42 Identities=2% Similarity=0.058 Sum_probs=26.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 55 SLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 55 ~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
.-.+.|.+..|-. ....+||+..|++..-|-.+|.||..=..
T Consensus 43 AA~~lf~~~G~~~-~s~~~IA~~AGvs~~tlY~~F~sKe~L~~ 84 (237)
T 3kkd_A 43 AAMRLIVRDGVRA-VRHRAVAAEAQVPLSATTYYFKDIDDLIT 84 (237)
T ss_dssp HHHHHHHHHCGGG-CCHHHHHHHHTSCTTTC-----CHHHHHH
T ss_pred HHHHHHHhcChhh-cCHHHHHHHhCCChhHHHHHcCCHHHHHH
Confidence 3344488888744 33667899999999999999998755433
No 245
>3mse_B Calcium-dependent protein kinase, putative; CDPKS, malaria, structural genomics consortium, SGC, transfe; 2.10A {Plasmodium falciparum}
Probab=26.20 E-value=75 Score=22.88 Aligned_cols=41 Identities=15% Similarity=0.144 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcCCChhHHHHhhH
Q psy3429 50 TQQLLSLEKKFR-----EKQYLSIAERAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 50 ~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~Ls~~qV~~WFq 90 (192)
.+++..|+..|. .+.+.+..+-..+...+|+....|+..|.
T Consensus 35 ~~~~~~l~~~F~~~D~d~~G~i~~~El~~~l~~~g~~~~~~~~~~~ 80 (180)
T 3mse_B 35 NNHIKYINELFYKLDTNHNGSLSHREIYTVLASVGIKKWDINRILQ 80 (180)
T ss_dssp HHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 677888888885 35688889888888888988777776664
No 246
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=26.19 E-value=20 Score=25.97 Aligned_cols=45 Identities=2% Similarity=0.160 Sum_probs=33.0
Q ss_pred HHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 55 SLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 55 ~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
...+.|.+..|-.. ...+||++.|++..-|-.+|.|+..=.....
T Consensus 22 aa~~l~~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 66 (203)
T 3f1b_A 22 AAVDVFSDRGFHET-SMDAIAAKAEISKPMLYLYYGSKDELFAACI 66 (203)
T ss_dssp HHHHHHHHHCTTTC-CHHHHHHHTTSCHHHHHHHCCSHHHHHHHHH
T ss_pred HHHHHHHHcCcccc-cHHHHHHHhCCchHHHHHHhCCHHHHHHHHH
Confidence 33444788887553 4667899999999999999999766544433
No 247
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=26.19 E-value=39 Score=24.02 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=34.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
+....+.|.+..|-... ..+||++.|++..-|-.+|.|+..=..-.
T Consensus 15 l~aa~~l~~~~G~~~~t-v~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 60 (195)
T 3ppb_A 15 LETALQLFVSQGFHGTS-TATIAREAGVATGTLFHHFPSKEQLLEQL 60 (195)
T ss_dssp HHHHHHHHHHTCSTTSC-HHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHhcCcccCC-HHHHHHHhCCChhHHHHHcCCHHHHHHHH
Confidence 44455558888875543 67789999999999999999976554443
No 248
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=26.19 E-value=34 Score=25.05 Aligned_cols=45 Identities=11% Similarity=0.239 Sum_probs=33.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
+....+.|....|-... ..+||++.|++..-|-..|.|+..=...
T Consensus 17 l~aA~~lf~~~G~~~~t-i~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 61 (216)
T 3f0c_A 17 INAAQKRFAHYGLCKTT-MNEIASDVGMGKASLYYYFPDKETLFEA 61 (216)
T ss_dssp HHHHHHHHHHHCSSSCC-HHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHcCCCcCC-HHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 34444558888885543 5678999999999999999997655443
No 249
>1t33_A Putative transcriptional repressor (TETR/ACRR FAM; structural genomics, TETR/CCRR FA helix turn helix DNA binding domain, PSI; 2.20A {Salmonella typhimurium} SCOP: a.4.1.9 a.121.1.1
Probab=26.09 E-value=31 Score=25.46 Aligned_cols=43 Identities=9% Similarity=0.081 Sum_probs=33.1
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 54 LSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 54 ~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
..-.+.|.+..|- ....+||++.|++..-|-.+|.|+..=...
T Consensus 19 ~aA~~lf~~~G~~--~s~~~IA~~agvs~~tiY~~F~sK~~L~~~ 61 (224)
T 1t33_A 19 AAALAQFGEYGLH--ATTRDIAALAGQNIAAITYYFGSKEDLYLA 61 (224)
T ss_dssp HHHHHHHHHHGGG--SCHHHHHHHHTSCHHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHHHhCcc--ccHHHHHHHhCCCHHHHHHhcCCHHHHHHH
Confidence 3334448888877 567888999999999999999997655443
No 250
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=25.94 E-value=38 Score=24.26 Aligned_cols=48 Identities=8% Similarity=0.196 Sum_probs=35.6
Q ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHHH
Q psy3429 52 QLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100 (192)
Q Consensus 52 Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~~ 100 (192)
=+....+.|.+..|-. ....+||++.|++..-|-..|.|+..=..-..
T Consensus 16 il~aa~~lf~~~G~~~-~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~ 63 (196)
T 3he0_A 16 ILAAAEQLIAESGFQG-LSMQKLANEAGVAAGTIYRYFSDKEHLLEEVR 63 (196)
T ss_dssp HHHHHHHHHHHHCTTT-CCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhCccc-CCHHHHHHHhCCCcchHHHhcCCHHHHHHHHH
Confidence 3455566688888765 34667899999999999999999766554433
No 251
>2pz9_A Putative regulatory protein; structural genomics, transcriptional regulator, PSI, protein structure initiative; 2.80A {Streptomyces coelicolor A3}
Probab=25.79 E-value=16 Score=27.65 Aligned_cols=46 Identities=11% Similarity=0.231 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
+..-.+.|.+..|-. ....+||++.|++..-|-.+|.|+..=..-.
T Consensus 36 l~aA~~lf~~~G~~~-~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~ 81 (226)
T 2pz9_A 36 VAAAKEEFARHGIAG-ARVDRIAKQARTSKERVYAYFRSKEALYAHV 81 (226)
T ss_dssp HHHHHHHHHHHHHHH-CCHHHHHHHTTSCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHHHHHhCccc-CcHHHHHHHHCCChHHHHHHcCCHHHHHHHH
Confidence 344445577766542 3366789999999999999999876554443
No 252
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=25.71 E-value=28 Score=23.17 Aligned_cols=23 Identities=30% Similarity=0.563 Sum_probs=20.0
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|-.+++
T Consensus 46 q~elA~~lgvs~~~is~~E~G~~ 68 (99)
T 2ppx_A 46 QEEFSARYHIPLGTLRDWEQGRS 68 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHcCCC
Confidence 46799999999999999987754
No 253
>1qv0_A Obelin, OBL; photoprotein, bioluminescence, atomic resolution, Ca binding, EF-hand, luminescent protein; HET: CZH; 1.10A {Obelia longissima} SCOP: a.39.1.5 PDB: 1qv1_A* 1sl9_A* 1el4_A* 2f8p_A* 1sl7_A 1jf2_A* 1s36_A* 1jf0_A* 3kpx_A*
Probab=25.67 E-value=1.4e+02 Score=21.28 Aligned_cols=38 Identities=16% Similarity=0.281 Sum_probs=27.2
Q ss_pred CCCC-CHHHHHHHHHHHH-----hcCCCCHHHHH-----HHHHhcCCCh
Q psy3429 45 RTPF-TTQQLLSLEKKFR-----EKQYLSIAERA-----EFSSSLHLTE 82 (192)
Q Consensus 45 Rt~f-t~~Ql~~Le~~F~-----~~~yps~~~r~-----~LA~~l~Ls~ 82 (192)
.+.+ +.+++..|+..|. .+.+.+..+-. .+...+|+..
T Consensus 10 ~~~~~s~~~~~~l~~~F~~~D~d~~G~i~~~El~~~~~~~~l~~~g~~~ 58 (195)
T 1qv0_A 10 KTDFDNPRWIKRHKHMFDFLDINGNGKITLDEIVSKASDDICAKLEATP 58 (195)
T ss_dssp SCCTTCHHHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTHHHHTTCCH
T ss_pred CcccCCHHHHHHHHHHHhHcCCCCCCcCcHHHHHHHHHHHHHHHcCCCc
Confidence 4444 9999999999995 35578888777 4455566643
No 254
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=25.66 E-value=1.4e+02 Score=19.42 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=30.6
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcC-CChhHHHHhhH
Q psy3429 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH-LTETQVKIWFQ 90 (192)
Q Consensus 39 ~~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~-Ls~~qV~~WFq 90 (192)
++.+..+..+|.++...|.+..+... ..=..||..++ =+..||+.=|+
T Consensus 12 ~~~~~~~~~WT~eEd~~Ll~~v~~~G----~~W~~IA~~v~~RT~~qcr~r~~ 60 (79)
T 2yus_A 12 SKGASAGREWTEQETLLLLEALEMYK----DDWNKVSEHVGSRTQDECILHFL 60 (79)
T ss_dssp CCSSCCSCCCCHHHHHHHHHHHHHSS----SCHHHHHHHHSSCCHHHHHHHHT
T ss_pred ccccccCCCcCHHHHHHHHHHHHHhC----CCHHHHHHHcCCCCHHHHHHHHH
Confidence 33445577899999999988876644 22344566664 56677765443
No 255
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=25.34 E-value=1.2e+02 Score=20.71 Aligned_cols=45 Identities=18% Similarity=0.265 Sum_probs=32.6
Q ss_pred CCCCHHHHHHHHHHHHh------cCCCCHHHHHHHHHhcC--CChhHHHHhhH
Q psy3429 46 TPFTTQQLLSLEKKFRE------KQYLSIAERAEFSSSLH--LTETQVKIWFQ 90 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~------~~yps~~~r~~LA~~l~--Ls~~qV~~WFq 90 (192)
..++.+++..|+..|.. +.+.+..+-..+...+| ++...|..+|.
T Consensus 5 ~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~ 57 (158)
T 2jnf_A 5 SKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLID 57 (158)
T ss_dssp TTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCSCSHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 45788999999999863 24677888777766666 46667776664
No 256
>2np5_A Transcriptional regulator; TETR family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE LMT NDS; 1.80A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=25.24 E-value=24 Score=26.03 Aligned_cols=45 Identities=13% Similarity=0.011 Sum_probs=33.1
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
+..-.+.|.++.|-. ....+||++.|++..-|-.+|.||..=..-
T Consensus 15 l~AA~~lf~~~G~~~-~s~~~IA~~AGvs~gtlY~~F~sKe~L~~a 59 (203)
T 2np5_A 15 AAALFDVAAESGLEG-ASVREVAKRAGVSIGAVQHHFSTKDEMFAF 59 (203)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHHhChhh-ccHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 344445588888764 336678999999999999999997654443
No 257
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=25.16 E-value=25 Score=25.28 Aligned_cols=45 Identities=9% Similarity=0.149 Sum_probs=32.2
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
+....+.|.+..|-. ....+||++.|++..-|-.+|.|+..=...
T Consensus 14 l~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 58 (206)
T 3dew_A 14 MEVATELFAQKGFYG-VSIRELAQAAGASISMISYHFGGKEGLYAA 58 (206)
T ss_dssp HHHHHHHHHHHCGGG-CCHHHHHHHHTCCHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhcCCccc-CcHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 344455577877644 335678999999999999999987554433
No 258
>1aih_A HP1 integrase; DNA integration, recombination; 2.50A {Haemophilus phage HP1} SCOP: d.163.1.1
Probab=25.08 E-value=1.6e+02 Score=20.75 Aligned_cols=43 Identities=2% Similarity=-0.051 Sum_probs=29.7
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHH
Q psy3429 43 KPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQV 85 (192)
Q Consensus 43 r~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV 85 (192)
+.+..|+.+++..|-..+.............|+..+||-...|
T Consensus 2 ~~~~~lt~~e~~~l~~~~~~~~~~~~~~~~~l~~~tG~R~~E~ 44 (170)
T 1aih_A 2 TELAFLYERDIYRLLAECDNSRNPDLGLIVRICLATGARWSEA 44 (170)
T ss_dssp CCCCCCCHHHHHHHHHHHTTSSSTTHHHHHHHHHHHCCCHHHH
T ss_pred CccccCCHHHHHHHHHHHhcccchhHHHHHHHHHHhCCcHHHH
Confidence 3456799999999998887666555555566676677654443
No 259
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=25.05 E-value=36 Score=25.69 Aligned_cols=45 Identities=20% Similarity=0.189 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 47 PFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
.+|..+.++|+...+. ....++|..++++++.|++...+=|.|..
T Consensus 159 ~Lt~rE~~vL~~l~~g------~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~ 203 (225)
T 3klo_A 159 KLTKREQQIIKLLGSG------ASNIEIADKLFVSENTVKTHLHNVFKKIN 203 (225)
T ss_dssp TSCHHHHHHHHHHTTT------CCHHHHHHHTTCCHHHHHHHHHHHTTTSC
T ss_pred cCCHHHHHHHHHHHcC------CCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 4788888888776432 24678899999999999988877665543
No 260
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=24.96 E-value=20 Score=25.76 Aligned_cols=40 Identities=10% Similarity=0.209 Sum_probs=30.2
Q ss_pred HHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHHH
Q psy3429 57 EKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99 (192)
Q Consensus 57 e~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr~ 99 (192)
.+.|.+. ......+||+..|++..-|-.+|.|+..=....
T Consensus 24 ~~lf~~~---~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~ 63 (190)
T 2v57_A 24 MLVLADH---PTAALGDIAAAAGVGRSTVHRYYPERTDLLRAL 63 (190)
T ss_dssp HHHHTTC---TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHH
T ss_pred HHHHHHc---CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHH
Confidence 3346555 566688899999999999999999976554443
No 261
>2oer_A Probable transcriptional regulator; helix-turn-helix, alpha-beta, structural genomics, PSI-2, protein structure initiative; 2.00A {Pseudomonas aeruginosa}
Probab=24.91 E-value=47 Score=24.58 Aligned_cols=44 Identities=14% Similarity=0.091 Sum_probs=28.1
Q ss_pred HHHHHHH---HHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 53 LLSLEKK---FREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 53 l~~Le~~---F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
..+|+.. |.+..|-.. ...+||++.|++..-|-.+|.|+..=..
T Consensus 27 ~~Il~aA~~lf~e~G~~~~-s~~~IA~~aGvskgtlY~yF~sKe~L~~ 73 (214)
T 2oer_A 27 ASILEAAVQVLASEGAQRF-TTARVAERAGVSIGSLYQYFPNKAAILF 73 (214)
T ss_dssp HHHHHHHHHC------CCC-CHHHHHHHHTCCHHHHHHHCSSHHHHHH
T ss_pred HHHHHHHHHHHHhhCcccc-cHHHHHHHhCCCCchHHHhCCCHHHHHH
Confidence 4556655 777777653 3667899999999999999999755443
No 262
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=24.86 E-value=37 Score=21.37 Aligned_cols=23 Identities=9% Similarity=0.083 Sum_probs=20.3
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||+.+|++...|..++.+++
T Consensus 3 ~~diA~~aGVS~sTVSrvLng~~ 25 (65)
T 1uxc_A 3 LDEIARLAGVSRTTASYVINGKA 25 (65)
T ss_dssp HHHHHHHHTSCHHHHHHHHHTCT
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998865
No 263
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=24.51 E-value=58 Score=24.47 Aligned_cols=47 Identities=15% Similarity=0.199 Sum_probs=30.3
Q ss_pred CCCCCHHHHHHHHHHHHhcCCCC----HHHHHHHHHhcCCChhHHHHhhHh
Q psy3429 45 RTPFTTQQLLSLEKKFREKQYLS----IAERAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~~~yps----~~~r~~LA~~l~Ls~~qV~~WFqN 91 (192)
|..|+.++.......-...-.+. .....++|+.||++...+..|-..
T Consensus 21 ~r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 21 KQKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp HTTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 34488888777543322111111 124678999999999999999764
No 264
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=24.30 E-value=1.3e+02 Score=22.51 Aligned_cols=48 Identities=19% Similarity=0.165 Sum_probs=33.5
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhc-----CCChhHHHHhhHhHHHH
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL-----HLTETQVKIWFQNRRAK 95 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l-----~Ls~~qV~~WFqNrR~k 95 (192)
..+|..+.++|+...+... ....+++||..+ +++++.|++.-.|-|.|
T Consensus 152 ~~LT~rE~~vL~~l~~~~~--~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~K 204 (238)
T 2gwr_A 152 ISLTPLEFDLLVALARKPR--QVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAK 204 (238)
T ss_dssp ECCCHHHHHHHHHHHHSTT--CCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHCCC--ceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHH
Confidence 4589999999887765322 123467788888 89999999877665544
No 265
>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2* 3m9s_2*
Probab=24.09 E-value=89 Score=23.82 Aligned_cols=37 Identities=16% Similarity=0.162 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHH
Q psy3429 50 TQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVK 86 (192)
Q Consensus 50 ~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~ 86 (192)
..-+.+|...=+...|.+....+.+|+.|||+..+|-
T Consensus 25 ~~li~~L~~~Q~~~G~l~~~~~~~iA~~l~l~~~~V~ 61 (181)
T 3i9v_2 25 AAIMPLLRRVQQEEGWIRPERIEEIARLVGTTPTEVM 61 (181)
T ss_dssp GGHHHHHHHHHHHHSSCCHHHHHHHHHHHTSCHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHhCcCHHHHH
Confidence 3456666666556689999999999999999998875
No 266
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=23.71 E-value=1.2e+02 Score=22.25 Aligned_cols=49 Identities=8% Similarity=0.059 Sum_probs=35.8
Q ss_pred CCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcC---CChhHHHHhhHhHHHHH
Q psy3429 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH---LTETQVKIWFQNRRAKA 96 (192)
Q Consensus 46 t~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~---Ls~~qV~~WFqNrR~k~ 96 (192)
..+|..+.++|+...+.. -....+++||..++ ++++.|++...|=|.|.
T Consensus 144 ~~Lt~rE~~vl~~l~~~~--~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl 195 (220)
T 1p2f_A 144 IHLPKKEFEILLFLAENA--GKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAI 195 (220)
T ss_dssp CCCCHHHHHHHHHHHHTT--TSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHCC--CceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHH
Confidence 458999988887665532 22344788999998 99999998887666553
No 267
>2aao_A CDPK, calcium-dependent protein kinase, isoform AK1; calmodulin-like domain, EF calcium binding protein, transferase; 2.00A {Arabidopsis thaliana}
Probab=23.68 E-value=1.5e+02 Score=20.48 Aligned_cols=44 Identities=14% Similarity=0.237 Sum_probs=30.5
Q ss_pred CCCHHHHHHHHHHHH-----hcCCCCHHHHHHHHHhcC--CChhHHHHhhH
Q psy3429 47 PFTTQQLLSLEKKFR-----EKQYLSIAERAEFSSSLH--LTETQVKIWFQ 90 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~-----~~~yps~~~r~~LA~~l~--Ls~~qV~~WFq 90 (192)
.++.+++..|+..|. .+.+.+..+-..+...+| ++...|..+|+
T Consensus 20 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~ 70 (166)
T 2aao_A 20 SLSEEEIAGLKEMFNMIDADKSGQITFEELKAGLKRVGANLKESEILDLMQ 70 (166)
T ss_dssp HSCHHHHHHHHHHHHHHCTTCCSSBCHHHHHHHGGGGTCCCCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 377888888888885 345788888777766665 34556665553
No 268
>2oi8_A Putative regulatory protein SCO4313; TETR, structural genomics, PSI-2, P structure initiative; 2.50A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1
Probab=23.61 E-value=22 Score=26.89 Aligned_cols=43 Identities=5% Similarity=0.059 Sum_probs=31.8
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 54 LSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 54 ~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
..-.+.|.+..|-.. ...+||++.|++..-|-..|.|+..=..
T Consensus 23 ~aA~~l~~~~G~~~~-s~~~IA~~agvs~~t~Y~~F~~K~~L~~ 65 (216)
T 2oi8_A 23 DHAWEQIATAGASAL-SLNAIAKRMGMSGPALYRYFDGRDELIT 65 (216)
T ss_dssp HHHHHHHHHHCTTSC-CHHHHHHHTTCCHHHHHTTCSSHHHHHH
T ss_pred HHHHHHHHhcCcccC-CHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 334445888887553 3667899999999999999999865443
No 269
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=23.59 E-value=36 Score=22.12 Aligned_cols=32 Identities=13% Similarity=0.073 Sum_probs=21.1
Q ss_pred HHHHhcCCCCHHHHHHHHHhcCCChhHHHHhh
Q psy3429 58 KKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89 (192)
Q Consensus 58 ~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WF 89 (192)
..+..+.--+.....+||++||++...|+...
T Consensus 21 ~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L 52 (77)
T 1qgp_A 21 KFLEELGEGKATTAHDLSGKLGTPKKEINRVL 52 (77)
T ss_dssp HHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHH
T ss_pred HHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHH
Confidence 45555552222335689999999998887544
No 270
>1dgu_A Calcium-saturated CIB; helical, EF-hands, blood clotting; NMR {Homo sapiens} SCOP: a.39.1.5 PDB: 1dgv_A 1xo5_A 1y1a_A*
Probab=23.52 E-value=1.3e+02 Score=21.46 Aligned_cols=36 Identities=19% Similarity=0.225 Sum_probs=26.2
Q ss_pred CCCCCCHHHHHHHHHHHHh-----------c--CCCCHHHHHHHHHhcCC
Q psy3429 44 PRTPFTTQQLLSLEKKFRE-----------K--QYLSIAERAEFSSSLHL 80 (192)
Q Consensus 44 ~Rt~ft~~Ql~~Le~~F~~-----------~--~yps~~~r~~LA~~l~L 80 (192)
..+.|+.+++..|.+.|.. + .+.+..+-.. ...+|+
T Consensus 10 ~~~~ls~~~~~~l~~~F~~~D~~~~~~~~~~~~G~i~~~el~~-l~~~g~ 58 (183)
T 1dgu_A 10 DLTFLTKQEILLAHRRFCELLPQEQRSVESSLRAQVPFEQILS-LPELKA 58 (183)
T ss_dssp CCCSCCHHHHHHHHHHHHHHSCSTTCSSCCCTTTCSCHHHHHT-STTSSS
T ss_pred HHcCCCHHHHHHHHHHHHHhCccccccccccccCcCcHHHHHH-HHhhhc
Confidence 3578999999999999965 4 6777766655 444444
No 271
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=23.42 E-value=36 Score=23.38 Aligned_cols=23 Identities=4% Similarity=0.170 Sum_probs=20.0
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|-.+++
T Consensus 39 q~elA~~~gis~~~is~~E~G~~ 61 (111)
T 3mlf_A 39 QKELGDLFKVSSRTIQNMEKDST 61 (111)
T ss_dssp HHHHHHHHTSCHHHHHHHHHCCT
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46789999999999999998764
No 272
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=23.33 E-value=36 Score=21.99 Aligned_cols=23 Identities=17% Similarity=0.183 Sum_probs=20.0
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|-.+++
T Consensus 30 q~elA~~~gis~~~is~~E~G~~ 52 (86)
T 3eus_A 30 QADLAERLDKPQSFVAKVETRER 52 (86)
T ss_dssp HHHHHHHTTCCHHHHHHHHTTSS
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 45799999999999999988764
No 273
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=23.29 E-value=44 Score=24.22 Aligned_cols=37 Identities=11% Similarity=0.082 Sum_probs=24.4
Q ss_pred HHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHH
Q psy3429 59 KFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96 (192)
Q Consensus 59 ~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~ 96 (192)
.|.+..|-. ....+||++.|++..-|-.+|.|+..=.
T Consensus 37 lf~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~ 73 (212)
T 3nxc_A 37 LESSDGSQR-ITTAKLAASVGVSEAALYRHFPSKTRMF 73 (212)
T ss_dssp HHC-------CCHHHHHHHTTSCHHHHHTTCSSHHHHH
T ss_pred HHhcCChhh-cCHHHHHHHhCCChhHHHHHCCCHHHHH
Confidence 355555544 4467789999999999999999876533
No 274
>3cwr_A Transcriptional regulator, TETR family; YP_425770.1, transcriptional regulator of TETR family, bacterial regulatory proteins; 1.50A {Rhodospirillum rubrum atcc 11170}
Probab=22.97 E-value=41 Score=24.22 Aligned_cols=40 Identities=5% Similarity=0.039 Sum_probs=29.4
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHH
Q psy3429 56 LEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96 (192)
Q Consensus 56 Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~ 96 (192)
-.+.|.+..|-.. ...+||++.|++..-|-.+|.|+-.=.
T Consensus 26 a~~lf~~~G~~~~-ti~~Ia~~agvs~~t~Y~~F~sK~~L~ 65 (208)
T 3cwr_A 26 AQRLLSSGGAAAM-TMEGVASEAGIAKKTLYRFASGRADLI 65 (208)
T ss_dssp HHHHHHHHCGGGC-CHHHHHHHHTCCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHcCHHhc-cHHHHHHHhCCCHHHHHHHcCCHHHHH
Confidence 3344777776543 356789999999999999999854433
No 275
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=22.69 E-value=59 Score=23.98 Aligned_cols=25 Identities=0% Similarity=0.232 Sum_probs=21.6
Q ss_pred HHHHHHHhcCCChhHHHHhhHhHHH
Q psy3429 70 ERAEFSSSLHLTETQVKIWFQNRRA 94 (192)
Q Consensus 70 ~r~~LA~~l~Ls~~qV~~WFqNrR~ 94 (192)
...+||+.+|++...|..|..+++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g~~~ 46 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTRGAI 46 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHSSSC
T ss_pred CHHHHHHHhCcCHHHHHHHHhCCCC
Confidence 5678999999999999999987653
No 276
>3lwj_A Putative TETR-family transcriptional regulator; structural G joint center for structural genomics, JCSG, protein structu initiative; 2.07A {Syntrophomonas wolfei subsp}
Probab=22.48 E-value=22 Score=25.84 Aligned_cols=44 Identities=14% Similarity=0.138 Sum_probs=32.4
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 54 LSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 54 ~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
....+.|.+..|-. ....+||++.|++..-|-.+|.|+..=..-
T Consensus 19 ~aa~~l~~~~G~~~-~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 62 (202)
T 3lwj_A 19 TCSLDLFIEKGYYN-TSIRDIIALSEVGTGTFYNYFVDKEDILKN 62 (202)
T ss_dssp HHHHHHHHHHCTTT-CCHHHHHHHHCSCHHHHHHHCSSHHHHHHH
T ss_pred HHHHHHHHHcCccc-CCHHHHHHHhCCCchhHHHHcCCHHHHHHH
Confidence 33444588888754 346678999999999999999997654443
No 277
>1a4p_A S100A10; S100 family, EF-hand protein, ligand of annexin II, calcium/phospholipid binding protein, calcium-phospholipid protein complex; 2.25A {Homo sapiens} SCOP: a.39.1.2 PDB: 1bt6_A
Probab=22.35 E-value=1.5e+02 Score=19.26 Aligned_cols=40 Identities=15% Similarity=0.226 Sum_probs=25.4
Q ss_pred HHHHHHHHHHH----hcCCCCHHHHHHHHHh-----c--CCChhHHHHhhH
Q psy3429 51 QQLLSLEKKFR----EKQYLSIAERAEFSSS-----L--HLTETQVKIWFQ 90 (192)
Q Consensus 51 ~Ql~~Le~~F~----~~~yps~~~r~~LA~~-----l--~Ls~~qV~~WFq 90 (192)
+++..|..+|. .+.+.+..+-..+... + .+++..|..+|.
T Consensus 6 ~~~~~l~~~F~~fD~~dg~Is~~El~~~l~~~~~~~lg~~~~~~ev~~l~~ 56 (96)
T 1a4p_A 6 HAMETMMFTFHKFAGDKGYLTKEDLRVLMEKEFPGFLENQKDPLAVDKIMK 56 (96)
T ss_dssp HHHHHHHHHHHHHHGGGCSBCHHHHHHHHHHHCHHHHHHSCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCeECHHHHHHHHHHHcccccccccCHHHHHHHHH
Confidence 45566666653 5668888877776543 2 356677777764
No 278
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=22.33 E-value=35 Score=22.99 Aligned_cols=23 Identities=17% Similarity=0.185 Sum_probs=20.1
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|-.+++
T Consensus 44 q~elA~~~gis~~~is~iE~G~~ 66 (99)
T 3g5g_A 44 QEDLAYKSNLDRTYISGIERNSR 66 (99)
T ss_dssp HHHHHHHHTCCHHHHHHHHTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 56899999999999999998764
No 279
>2guh_A Putative TETR-family transcriptional regulator; helix-turn-helix, TETR fold, structural genomics, PSI, prote structure initiative; HET: MSE; 1.52A {Rhodococcus SP}
Probab=22.17 E-value=39 Score=25.31 Aligned_cols=43 Identities=9% Similarity=0.210 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 54 LSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 54 ~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
....+.|.+..|-.. ...+||++.|++..-|-..|.|+..=..
T Consensus 46 ~AA~~lf~e~G~~~~-tv~~IA~~AGvs~~tlY~~F~sKe~Ll~ 88 (214)
T 2guh_A 46 DAAGRAFATRPYREI-TLKDIAEDAGVSAPLIIKYFGSKEQLFD 88 (214)
T ss_dssp HHHHHHHHHSCGGGC-CHHHHHHHHTSCHHHHHHHHSSHHHHHH
T ss_pred HHHHHHHHHcChhhc-CHHHHHHHhCCCHHHHHHHcCCHHHHHH
Confidence 334445788887543 3567899999999999999998755443
No 280
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=22.07 E-value=24 Score=27.02 Aligned_cols=44 Identities=14% Similarity=0.149 Sum_probs=30.4
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
+..-.+.|.+..|-. ....+||++.|++..-|-.+|.||..=..
T Consensus 24 l~AA~~lf~~~G~~~-~t~~~IA~~aGvs~~tlY~~F~sKe~Ll~ 67 (251)
T 3npi_A 24 LDIALSLFSELGFSD-AKLEAIAKKSGMSKRMIHYHFGDKRGLYI 67 (251)
T ss_dssp HHHHHHHHHHHHHHH-CCHHHHHHHHCCCHHHHHHHHCSHHHHHH
T ss_pred HHHHHHHHHHcCccc-cCHHHHHHHHCCCHHHHHHHcCCHHHHHH
Confidence 334444577766532 23567899999999999999998755443
No 281
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=22.04 E-value=62 Score=23.20 Aligned_cols=45 Identities=16% Similarity=0.266 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
+..-.+.|.+..|-.. ...+||++.|++..-|-.+|.|+..=..-
T Consensus 13 l~aA~~lf~~~G~~~~-t~~~IA~~agvs~~tlY~~F~sK~~L~~a 57 (192)
T 2zcm_A 13 IDNAITLFSEKGYDGT-TLDDISKSVNIKKASLYYHYDNKEEIYRK 57 (192)
T ss_dssp HHHHHHHHHHHCTTTC-CHHHHHHHTTCCHHHHHHHTCCHHHHHHH
T ss_pred HHHHHHHHHHcCcccC-CHHHHHHHhCCChHHHHHHCCCHHHHHHH
Confidence 4444556888887553 36678999999999999999997655443
No 282
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=22.00 E-value=32 Score=23.54 Aligned_cols=23 Identities=22% Similarity=0.177 Sum_probs=20.2
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|-.+++
T Consensus 37 q~elA~~~gis~~~is~~E~G~~ 59 (114)
T 3vk0_A 37 QEELARQCGLDRTYVSAVERKRW 59 (114)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCC
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46899999999999999998764
No 283
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=21.80 E-value=64 Score=22.91 Aligned_cols=45 Identities=11% Similarity=0.102 Sum_probs=33.7
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
+....+.|.+..|-... ..+||++.|++...|-..|.|+-.=..-
T Consensus 8 l~aa~~l~~~~G~~~~t-i~~Ia~~agvs~~t~Y~~F~sK~~L~~~ 52 (194)
T 3bqz_B 8 LGVAKELFIKNGYNATT-TGEIVKLSESSKGNLYYHFKTKENLFLE 52 (194)
T ss_dssp HHHHHHHHHHHTTTTCC-HHHHHHHTTCCHHHHHHHTSSHHHHHHH
T ss_pred HHHHHHHHHHcCCccCC-HHHHHHHhCCCchhHHHhCCCHHHHHHH
Confidence 44555668888876543 6678999999999999999997654443
No 284
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=21.78 E-value=44 Score=21.44 Aligned_cols=21 Identities=10% Similarity=0.086 Sum_probs=18.5
Q ss_pred HHHHHHhcCCChhHHHHhhHh
Q psy3429 71 RAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqN 91 (192)
..+||+.+|++...|..|..+
T Consensus 25 ~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 25 LSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp HHHHHHHHSSCHHHHHHTTTS
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 457999999999999999875
No 285
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=21.54 E-value=32 Score=25.12 Aligned_cols=44 Identities=9% Similarity=0.252 Sum_probs=32.3
Q ss_pred HHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHH
Q psy3429 53 LLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97 (192)
Q Consensus 53 l~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~k 97 (192)
+....+.|.+..|-... ..+||++.|++..-|-.+|.|+-.=..
T Consensus 20 l~aA~~lf~~~G~~~~s-~~~Ia~~agvs~~t~Y~yF~sKe~L~~ 63 (203)
T 3ccy_A 20 IERAAAMFARQGYSETS-IGDIARACECSKSRLYHYFDSKEAVLR 63 (203)
T ss_dssp HHHHHHHHHHTCTTTSC-HHHHHHHTTCCGGGGTTTCSCHHHHHH
T ss_pred HHHHHHHHHHcCcccCC-HHHHHHHhCCCcCeeeeeeCCHHHHHH
Confidence 34445568888886544 667899999999999989988754443
No 286
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=21.45 E-value=2.5e+02 Score=22.50 Aligned_cols=52 Identities=23% Similarity=0.226 Sum_probs=35.5
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhc-CCChhHHHHhhHhHHHH
Q psy3429 40 PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSL-HLTETQVKIWFQNRRAK 95 (192)
Q Consensus 40 ~~rr~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l-~Ls~~qV~~WFqNrR~k 95 (192)
...+....+|.++...++..|..-.. + =..||+.+ +=+..||+..|.|.|.|
T Consensus 128 ~~~k~s~~WTeEE~~lFleAl~kYGK-D---W~~IAk~VgTKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 128 VIQKCNARWTTEEQLLAVQAIRKYGR-D---FQAISDVIGNKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCCSSCCHHHHHHHHHHHHHHSS-C---HHHHHHHHSSCCHHHHHHHHHHTTTT
T ss_pred CCCccCCCCCHHHHHHHHHHHHHHCc-C---HHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence 34566778999999998888876442 2 33345555 45789999977766644
No 287
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=21.42 E-value=37 Score=23.49 Aligned_cols=23 Identities=4% Similarity=0.083 Sum_probs=20.3
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|..+++
T Consensus 28 q~~lA~~~gis~~~is~~E~g~~ 50 (126)
T 3ivp_A 28 REQVGAMIEIDPRYLTNIENKGQ 50 (126)
T ss_dssp HHHHHHHHTCCHHHHHHHHHSCC
T ss_pred HHHHHHHhCcCHHHHHHHHCCCC
Confidence 56899999999999999998864
No 288
>3v6g_A Probable transcriptional regulatory protein (PROB family); helix-turn-helix DNA binding domain; 1.82A {Mycobacterium tuberculosis}
Probab=21.33 E-value=47 Score=24.79 Aligned_cols=42 Identities=7% Similarity=0.125 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHH
Q psy3429 54 LSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96 (192)
Q Consensus 54 ~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~ 96 (192)
..-.+.|....|-... ..+||...|++..-|-.+|.||..=.
T Consensus 21 ~AA~~lf~~~G~~~~s-~~~IA~~AGvs~~tlY~~F~sKe~L~ 62 (208)
T 3v6g_A 21 EAAERVIARQGLGGLS-HRRVAAEANVPVGSTTYYFNDLDALR 62 (208)
T ss_dssp HHHHHHHHHHCTTCCC-HHHHHHHHTSCHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHhCcccCC-HHHHHHHhCCCchhHHHHcCCHHHHH
Confidence 3344458888886533 56779999999999999999975443
No 289
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=21.08 E-value=41 Score=22.85 Aligned_cols=23 Identities=9% Similarity=0.112 Sum_probs=20.4
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|-.+++
T Consensus 44 q~~lA~~~gis~~~is~~E~g~~ 66 (117)
T 3f52_A 44 LRELAEASRVSPGYLSELERGRK 66 (117)
T ss_dssp HHHHHHHTTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHCCCC
Confidence 46899999999999999998775
No 290
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=20.98 E-value=46 Score=21.87 Aligned_cols=23 Identities=4% Similarity=0.183 Sum_probs=19.8
Q ss_pred HHHHHHhcCCChhH----HHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQ----VKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~q----V~~WFqNrR 93 (192)
..+||..+|++... |..|-.+++
T Consensus 17 q~~lA~~~gis~~~~~~~is~~E~g~~ 43 (98)
T 3lfp_A 17 QEKLGVLAGIDEASASARMNQYEKGKH 43 (98)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHTSS
T ss_pred HHHHHHHhCCCcchhhhHHHHHHCCCC
Confidence 56899999999999 999988754
No 291
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=20.87 E-value=1.8e+02 Score=18.76 Aligned_cols=42 Identities=14% Similarity=0.074 Sum_probs=30.2
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhh
Q psy3429 44 PRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWF 89 (192)
Q Consensus 44 ~Rt~ft~~Ql~~Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WF 89 (192)
+|..||.++-..|.+.+++-.. . =..||..+|=+..+|+.-|
T Consensus 22 ~k~~wT~EED~~L~~l~~~~G~--k--W~~IA~~lgRt~~q~knRw 63 (73)
T 2llk_A 22 HVGKYTPEEIEKLKELRIKHGN--D--WATIGAALGRSASSVKDRC 63 (73)
T ss_dssp CCCSSCHHHHHHHHHHHHHHSS--C--HHHHHHHHTSCHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHCC--C--HHHHHHHhCCCHHHHHHHH
Confidence 4678999998888888766441 1 3456777788889988755
No 292
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=20.86 E-value=36 Score=23.18 Aligned_cols=23 Identities=17% Similarity=0.211 Sum_probs=20.2
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|-.+++
T Consensus 52 q~elA~~~gis~~~is~~E~G~~ 74 (107)
T 2jvl_A 52 QAELGKEIGETAATVASYERGTA 74 (107)
T ss_dssp HHHHHHHHTCCHHHHHHHTTTCS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 46799999999999999998755
No 293
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=20.85 E-value=40 Score=22.43 Aligned_cols=23 Identities=17% Similarity=0.349 Sum_probs=19.7
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|..+++
T Consensus 34 q~~lA~~~gis~~~is~~e~g~~ 56 (104)
T 3cec_A 34 TANFAEILGVSNQTIQEVINGQR 56 (104)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCc
Confidence 56799999999999999988754
No 294
>1fpw_A Yeast frequenin, calcium-binding protein NCS-1; EF-hand, metal binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2ju0_A
Probab=20.84 E-value=1.8e+02 Score=20.56 Aligned_cols=46 Identities=15% Similarity=0.174 Sum_probs=31.7
Q ss_pred CCCCCHHHHHHHHHHHHh---cCCCCHHHHHHHHHhcC---CChhHHHHhhH
Q psy3429 45 RTPFTTQQLLSLEKKFRE---KQYLSIAERAEFSSSLH---LTETQVKIWFQ 90 (192)
Q Consensus 45 Rt~ft~~Ql~~Le~~F~~---~~yps~~~r~~LA~~l~---Ls~~qV~~WFq 90 (192)
.+.|+.+++..|-+.|.. +.+.+..+-..+...++ .....++..|+
T Consensus 19 ~~~~~~~~i~~~~~~fd~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~f~ 70 (190)
T 1fpw_A 19 STYFDRREIQQWHKGFLRDCPSGQLAREDFVKIYKQFFPFGSPEDFANHLFT 70 (190)
T ss_dssp TCCSTHHHHHHHHHHHHHHCTTCCEEHHHHHHHHHHHCTTSCCSHHHHHHHH
T ss_pred hcCCCHHHHHHHHHHHHHHCCCCcCcHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 367999999999999964 45788888777766652 33444554443
No 295
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=20.80 E-value=99 Score=20.52 Aligned_cols=24 Identities=8% Similarity=0.070 Sum_probs=19.3
Q ss_pred HHHHHHHHhcCCChhHHHHhhHhH
Q psy3429 69 AERAEFSSSLHLTETQVKIWFQNR 92 (192)
Q Consensus 69 ~~r~~LA~~l~Ls~~qV~~WFqNr 92 (192)
....+||..+|++...+...|+..
T Consensus 19 ~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 19 ITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHH
Confidence 346789999999999988888653
No 296
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=20.69 E-value=1.3e+02 Score=21.20 Aligned_cols=43 Identities=19% Similarity=0.240 Sum_probs=25.7
Q ss_pred CCCHHHHHHHHHHHHh-----cCCCCHHHHHHHHHhcCC--ChhHHHHhh
Q psy3429 47 PFTTQQLLSLEKKFRE-----KQYLSIAERAEFSSSLHL--TETQVKIWF 89 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F~~-----~~yps~~~r~~LA~~l~L--s~~qV~~WF 89 (192)
.|+.+++..|+..|.. +.+.+..+-..+...+|+ +...|+..|
T Consensus 4 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~ 53 (179)
T 2f2o_A 4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMI 53 (179)
T ss_dssp --CCSHHHHHHHHHHHHCTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 4677788888888752 446777777766665543 344444444
No 297
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=20.67 E-value=40 Score=22.75 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=18.9
Q ss_pred HHHHHHhcCCChhHHHHhhHhHH
Q psy3429 71 RAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
..+||..+|++...|..|..+++
T Consensus 27 q~~lA~~~gis~~~is~~e~g~~ 49 (113)
T 2eby_A 27 INELAELLHVHRNSVSALINNNR 49 (113)
T ss_dssp HHHHHHHHTSCHHHHHHHHTTSS
T ss_pred HHHHHHHHCcCHHHHHHHHcCCC
Confidence 56789999999999998887754
No 298
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=20.47 E-value=40 Score=22.46 Aligned_cols=21 Identities=10% Similarity=0.104 Sum_probs=19.2
Q ss_pred HHHHHHhcCCChhHHHHhhHh
Q psy3429 71 RAEFSSSLHLTETQVKIWFQN 91 (192)
Q Consensus 71 r~~LA~~l~Ls~~qV~~WFqN 91 (192)
..+||..+|++...|..|..+
T Consensus 17 q~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 17 LSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp HHHHHHHHTCCHHHHHHHHTT
T ss_pred HHHHHHHHCcCHHHHHHHHcC
Confidence 467999999999999999987
No 299
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=20.38 E-value=1.1e+02 Score=23.04 Aligned_cols=41 Identities=15% Similarity=0.107 Sum_probs=28.4
Q ss_pred CCCHHHHHHHHHHH---HhcCCCCHHHHHHHHHhcCCChhHHHHhh
Q psy3429 47 PFTTQQLLSLEKKF---REKQYLSIAERAEFSSSLHLTETQVKIWF 89 (192)
Q Consensus 47 ~ft~~Ql~~Le~~F---~~~~yps~~~r~~LA~~l~Ls~~qV~~WF 89 (192)
.+|..|..+|+-.. +.+.|+- ...+||+.+||+...|..+.
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~--s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPP--SVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCC--CHHHHHHHHTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCC--CHHHHHHHcCCCcHHHHHHH
Confidence 36788888888764 3455542 25688999999977665444
No 300
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=20.10 E-value=48 Score=23.93 Aligned_cols=24 Identities=17% Similarity=0.131 Sum_probs=18.6
Q ss_pred HHHHHHHhcCCChhHHHHhhHhHH
Q psy3429 70 ERAEFSSSLHLTETQVKIWFQNRR 93 (192)
Q Consensus 70 ~r~~LA~~l~Ls~~qV~~WFqNrR 93 (192)
...+||.+.||++++|..=....|
T Consensus 94 n~~eLArkYgLSer~I~~Ii~~~r 117 (129)
T 1rr7_A 94 NVSELTTRYGVTFNTVYKAIRRMR 117 (129)
T ss_dssp CHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHHHHH
Confidence 467899999999999886654333
No 301
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=20.08 E-value=76 Score=23.06 Aligned_cols=42 Identities=14% Similarity=0.229 Sum_probs=31.8
Q ss_pred HHHHHHhcCCCCHHHHHHHHHhcCCChhHHHHhhHhHHHHHHH
Q psy3429 56 LEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98 (192)
Q Consensus 56 Le~~F~~~~yps~~~r~~LA~~l~Ls~~qV~~WFqNrR~k~kr 98 (192)
..+.|....|-.. ...+||++.|++..-|-.+|.|+..=..-
T Consensus 26 A~~l~~~~G~~~~-t~~~IA~~agvs~~t~Y~~F~sK~~L~~~ 67 (218)
T 3gzi_A 26 ARNLFIERPYAQV-SIREIASLAGTDPGLIRYYFGSKEKLFST 67 (218)
T ss_dssp HHHHHHTSCCSCC-CHHHHHHHHTSCTHHHHHHHSSHHHHHHH
T ss_pred HHHHHHHCCCCcC-CHHHHHHHhCCCHHHHHHHcCCHHHHHHH
Confidence 3444888887654 36678999999999999999998655443
No 302
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=20.04 E-value=52 Score=20.81 Aligned_cols=21 Identities=10% Similarity=0.164 Sum_probs=17.8
Q ss_pred HHHHHHHhcCCChhHHHHhhH
Q psy3429 70 ERAEFSSSLHLTETQVKIWFQ 90 (192)
Q Consensus 70 ~r~~LA~~l~Ls~~qV~~WFq 90 (192)
.-.++|+.||++..-|..|..
T Consensus 15 sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 15 NQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp CHHHHHHHSSSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 356789999999999999974
Done!