RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3429
(192 letters)
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA
complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Length = 58
Score = 118 bits (299), Expect = 7e-36
Identities = 53/58 (91%), Positives = 56/58 (96%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
RKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNRRAKAKRL
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58
>2djn_A Homeobox protein DLX-5; structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens}
Length = 70
Score = 115 bits (289), Expect = 3e-34
Identities = 32/66 (48%), Positives = 50/66 (75%)
Query: 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
RKPRT +++ QL +L+++F++ QYL++ ERAE ++SL LT+TQVKIWFQN+R+K
Sbjct: 3 SGSSGRKPRTIYSSFQLAALQRRFQKTQYLALPERAELAASLGLTQTQVKIWFQNKRSKI 62
Query: 97 KRLQEA 102
K+ +
Sbjct: 63 KKSGPS 68
>2vi6_A Homeobox protein nanog; homeodomain, DNA-binding, transcription,
transcription facto developmental protein, transcription
regulation, NUC homeobox; 2.6A {Mus musculus}
Length = 62
Score = 114 bits (288), Expect = 4e-34
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
+K RT F+ QL +L+ +F++++YLS+ + E SS L+L+ QVK WFQN+R K KR Q
Sbjct: 3 KQKMRTVFSQAQLCALKDRFQKQKYLSLQQMQELSSILNLSYKQVKTWFQNQRMKCKRWQ 62
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus,
transcription-DNA CO; 1.70A {Homo sapiens}
Length = 58
Score = 113 bits (285), Expect = 9e-34
Identities = 31/57 (54%), Positives = 42/57 (73%)
Query: 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97
RKPR F+ Q+ LE++F++++YLS ER + +S L LT TQVKIWFQNRR K+K
Sbjct: 2 RRKPRVLFSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKSK 58
>3a01_A Homeodomain-containing protein; homeodomain, protein-DNA complex,
DNA-binding, homeobox, NUC developmental protein; 2.70A
{Drosophila melanogaster}
Length = 93
Score = 114 bits (287), Expect = 1e-33
Identities = 34/76 (44%), Positives = 47/76 (61%)
Query: 36 RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
R +KPRT FT Q+ LEK+F +++YL+ AERA + L +T+ QVK WFQNRR K
Sbjct: 12 RTPPKRKKPRTSFTRIQVAELEKRFHKQKYLASAERAALARGLKMTDAQVKTWFQNRRTK 71
Query: 96 AKRLQEAEIEKIKMSA 111
+R E E + +A
Sbjct: 72 WRRQTAEEREAERQAA 87
>2l9r_A Homeobox protein NKX-3.1; structural genomics, northeast structural
genomics consortiu PSI-biology, protein structure
initiative; NMR {Homo sapiens}
Length = 69
Score = 112 bits (283), Expect = 2e-33
Identities = 30/63 (47%), Positives = 41/63 (65%)
Query: 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
+ + + Q++ LE+KF ++YLS ERA + +L LTETQVKIWFQNRR K KR Q
Sbjct: 4 HHHHHSHMSHTQVIELERKFSHQKYLSAPERAHLAKNLKLTETQVKIWFQNRRYKTKRKQ 63
Query: 101 EAE 103
+
Sbjct: 64 LSS 66
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding
protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Length = 68
Score = 112 bits (283), Expect = 2e-33
Identities = 30/65 (46%), Positives = 43/65 (66%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
RK R F+ Q+ LE++F++++YLS ER +S +HLT TQVKIWFQN R K KR +
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
Query: 102 AEIEK 106
+ +
Sbjct: 63 DKAAQ 67
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics,
protein structure initiative, PSI, center for eukaryotic
structural genomics; NMR {Homo sapiens}
Length = 84
Score = 109 bits (275), Expect = 5e-32
Identities = 29/85 (34%), Positives = 48/85 (56%), Gaps = 3/85 (3%)
Query: 17 SPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
S + + K + + +K RT F++ QL L +F+ ++YLS+ + E S+
Sbjct: 1 SKQPTSAENSVAKKED---KVPVKKQKTRTVFSSTQLCVLNDRFQRQKYLSLQQMQELSN 57
Query: 77 SLHLTETQVKIWFQNRRAKAKRLQE 101
L+L+ QVK WFQN+R K+KR Q+
Sbjct: 58 ILNLSYKQVKTWFQNQRMKSKRWQK 82
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic
development, complex (homeodomain/DNA); HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P*
1vnd_A 1qry_A
Length = 77
Score = 108 bits (271), Expect = 1e-31
Identities = 32/68 (47%), Positives = 40/68 (58%)
Query: 36 RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
RK R FT Q LE++FR+++YLS ER +S + LT TQVKIWFQN R K
Sbjct: 4 GLPNKKRKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYK 63
Query: 96 AKRLQEAE 103
KR Q +
Sbjct: 64 TKRAQNEK 71
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with
the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 101 bits (252), Expect = 1e-28
Identities = 30/66 (45%), Positives = 44/66 (66%)
Query: 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
K K R+ RT FT QL+ LEK+F +++YLS +R + + SL L++ QVK W+QNRR K
Sbjct: 13 KAKKGRRSRTVFTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKW 72
Query: 97 KRLQEA 102
K+ +
Sbjct: 73 KKSGPS 78
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental
protein, DNA-binding, N gene regulation; 1.54A {Homo
sapiens}
Length = 56
Score = 98.2 bits (245), Expect = 1e-27
Identities = 26/53 (49%), Positives = 38/53 (71%)
Query: 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
T F+ Q+L LE++F ++YL+ AERA + +L +T+ QVK WFQNRR K +R
Sbjct: 2 TSFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 70
Score = 96.3 bits (240), Expect = 6e-27
Identities = 27/62 (43%), Positives = 36/62 (58%)
Query: 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
+ + F+ Q + LEKKF ++YLS ER + L L+E QVK WFQNRRAK
Sbjct: 3 SGSSGKGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKW 62
Query: 97 KR 98
+R
Sbjct: 63 RR 64
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding
proteins/DNA), complex, DNA- binding protein, DNA; HET:
DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1f43_A 1yrn_A*
Length = 61
Score = 93.8 bits (234), Expect = 6e-26
Identities = 20/61 (32%), Positives = 35/61 (57%)
Query: 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
K + + K ++ + Q LE+ FR KQ L+ E+ E + +T QV++WF N+R ++
Sbjct: 1 KKEKSPKGKSSISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRS 60
Query: 97 K 97
K
Sbjct: 61 K 61
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix,
helix-turn-helix; NMR {Drosophila melanogaster} SCOP:
a.4.1.1
Length = 68
Score = 89.8 bits (223), Expect = 3e-24
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
R+ RT FT+ Q+ LE+ F + +YL+ A+ S+ L L QVKIWF+NRR + K +
Sbjct: 3 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62
Query: 102 AEIEK 106
++
Sbjct: 63 QHKDQ 67
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA
binding protein/DNA), transcription/DNA complex; HET:
DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB:
1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A
1du0_A* 1ztr_A 1enh_A 2p81_A
Length = 61
Score = 88.9 bits (221), Expect = 4e-24
Identities = 27/58 (46%), Positives = 42/58 (72%)
Query: 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
++PRT F+++QL L+++F E +YL+ R + SS L L E Q+KIWF+N+RAK K+
Sbjct: 3 EKRPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIKK 60
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA
complex, transcription/DNA complex; 2.00A {Drosophila
melanogaster} SCOP: a.4.1.1
Length = 60
Score = 87.0 bits (216), Expect = 2e-23
Identities = 28/59 (47%), Positives = 40/59 (67%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
R+ RT FT QL LEK+F ++ Y+S R E ++ L+L E+ +K+WFQNRR K KR +
Sbjct: 2 RRYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKRQR 60
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA
complex, transcription/DNA complex; 2.42A {Mesocricetus
auratus}
Length = 63
Score = 84.0 bits (208), Expect = 4e-22
Identities = 29/62 (46%), Positives = 41/62 (66%)
Query: 40 PNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
N++ RT +T QLL LEK+F +Y+S R E + L+LTE +KIWFQNRR K K+
Sbjct: 2 SNKRTRTAYTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61
Query: 100 QE 101
++
Sbjct: 62 ED 63
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR
{Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A
1hom_A 1ftz_A
Length = 68
Score = 81.7 bits (202), Expect = 3e-21
Identities = 28/66 (42%), Positives = 40/66 (60%)
Query: 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
++ R +T Q L LEK+F +YL+ R E + +L LTE Q+KIWFQNRR K K+
Sbjct: 2 RKRGRQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKEN 61
Query: 101 EAEIEK 106
+ + E
Sbjct: 62 KTKGEP 67
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex,
DNA-binding protein, protein/DNA complex; HET: DNA;
2.35A {Homo sapiens} SCOP: a.4.1.1
Length = 97
Score = 81.9 bits (202), Expect = 6e-21
Identities = 35/74 (47%), Positives = 44/74 (59%)
Query: 25 KGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQ 84
+ P V+ RT FTT+QL LEK+F +YLS A R E +++L L ETQ
Sbjct: 18 RNPPKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQ 77
Query: 85 VKIWFQNRRAKAKR 98
VKIWFQNRR K K+
Sbjct: 78 VKIWFQNRRMKQKK 91
>2xsd_C POU domain, class 3, transcription factor 1; transcription-DNA
complex, SOX; 2.05A {Mus musculus}
Length = 164
Score = 83.1 bits (205), Expect = 1e-20
Identities = 25/89 (28%), Positives = 36/89 (40%)
Query: 14 ILSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAE 73
+L+ L + P + RK RT +LE F + S E
Sbjct: 72 LLNKWLEETDSSSGSPTNLDKIAAQGRKRKKRTSIEVGVKGALESHFLKCPKPSAHEITG 131
Query: 74 FSSSLHLTETQVKIWFQNRRAKAKRLQEA 102
+ SL L + V++WF NRR K KR+ A
Sbjct: 132 LADSLQLEKEVVRVWFCNRRQKEKRMTPA 160
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA
binding, homeodomain, homeotic proteins, development,
specificity; HET: DNA; 2.40A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 9ant_A*
Length = 81
Score = 80.6 bits (199), Expect = 1e-20
Identities = 29/67 (43%), Positives = 39/67 (58%)
Query: 36 RKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
+ R+ R +T Q L LEK+F YL+ R E + +L LTE Q+KIWFQNRR K
Sbjct: 15 GTNGLRRRGRQTYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMK 74
Query: 96 AKRLQEA 102
K+ +A
Sbjct: 75 LKKEIQA 81
>1e3o_C Octamer-binding transcription factor 1; transcription factor, POU
domain, dimer, DNA binding; 1.9A {Homo sapiens} SCOP:
a.4.1.1 a.35.1.1 PDB: 1gt0_C 1hf0_A* 1cqt_A* 1o4x_A
1oct_C* 1pou_A 1pog_A 1hdp_A
Length = 160
Score = 82.7 bits (204), Expect = 1e-20
Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 4/84 (4%)
Query: 16 SSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
S LS + + P + R+ RK RT T ++LEK F E Q + + +
Sbjct: 80 SDSSLSSPSALNSPGIEGLSRR----RKKRTSIETNIRVALEKSFMENQKPTSEDITLIA 135
Query: 76 SSLHLTETQVKIWFQNRRAKAKRL 99
L++ + +++WF NRR K KR+
Sbjct: 136 EQLNMEKEVIRVWFSNRRQKEKRI 159
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation,
helix-turn-helix, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 70
Score = 79.9 bits (197), Expect = 2e-20
Identities = 22/65 (33%), Positives = 39/65 (60%)
Query: 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
RK R P++ QL LE+++ ++++ +R + S++ L+E Q+ IWFQNRR K K+
Sbjct: 5 SSGRKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64
Query: 99 LQEAE 103
+
Sbjct: 65 SGPSS 69
>2l7z_A Homeobox protein HOX-A13; gene regulation; NMR {Homo sapiens} PDB:
2ld5_A*
Length = 73
Score = 79.5 bits (196), Expect = 3e-20
Identities = 24/69 (34%), Positives = 40/69 (57%)
Query: 35 LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
+ RK R P+T QL LE+++ ++++ +R S++ +L+E QV IWFQNRR
Sbjct: 1 MSHMLEGRKKRVPYTKVQLKELEREYATNKFITKDKRRRISATTNLSERQVTIWFQNRRV 60
Query: 95 KAKRLQEAE 103
K K++
Sbjct: 61 KEKKVINKL 69
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex,
HOX hexapeptide, TALE homeodomain, homeodomain
interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB:
1san_A
Length = 77
Score = 79.5 bits (196), Expect = 3e-20
Identities = 31/67 (46%), Positives = 41/67 (61%)
Query: 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
+ RK R P+T Q L LEK+F YL+ R E + L+LTE QVKIWFQNRR K K+
Sbjct: 11 RSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKK 70
Query: 99 LQEAEIE 105
+ + +
Sbjct: 71 INKDRAK 77
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain,
three helices with the DNA binding helix- turn-helix
motif, structural genomics; NMR {Homo sapiens}
Length = 70
Score = 78.2 bits (193), Expect = 8e-20
Identities = 21/57 (36%), Positives = 29/57 (50%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
R RT FT QL L+ F Y E + S+ L+L + +WFQN R KA++
Sbjct: 8 RSSRTRFTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARK 64
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A
{Drosophila melanogaster} PDB: 2r5z_A*
Length = 88
Score = 78.0 bits (192), Expect = 1e-19
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
++ RT +T Q L LEK+F +YL+ R E + +L LTE Q+KIWFQNRR K K+
Sbjct: 26 GETKRQRTSYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85
>1au7_A Protein PIT-1, GHF-1; complex (DNA-binding protein/DNA), pituitary,
CPHD, POU domain, transcription factor,
transcription/DNA complex; HET: DNA; 2.30A {Rattus
norvegicus} SCOP: a.4.1.1 a.35.1.1
Length = 146
Score = 79.6 bits (196), Expect = 2e-19
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97
++ RK RT + +LE+ F E S E + L+L + V++WF NRR + K
Sbjct: 84 NERKRKRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREK 143
Query: 98 RLQ 100
R++
Sbjct: 144 RVK 146
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain
variant, DNA binding protein, developmental protein,
disease mutation, DNA-binding; NMR {Homo sapiens}
Length = 67
Score = 72.3 bits (178), Expect = 1e-17
Identities = 26/57 (45%), Positives = 34/57 (59%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
R+PRT FT Q+ LE FR Y I + + L+L +++IWFQNRRAK KR
Sbjct: 2 RRPRTAFTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKR 58
>3l1p_A POU domain, class 5, transcription factor 1; POU, transcription
factor DNA complex, pore, stem cells; HET: DNA; 2.80A
{Mus musculus} PDB: 1ocp_A
Length = 155
Score = 74.8 bits (183), Expect = 1e-17
Identities = 20/85 (23%), Positives = 39/85 (45%)
Query: 14 ILSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAE 73
+L + N + +++ + + ++ RT + SLE F + S+ +
Sbjct: 69 LLEKWVEEADNNENLQEISKSETLVQARKRKRTSIENRVRWSLETMFLKSPKPSLQQITH 128
Query: 74 FSSSLHLTETQVKIWFQNRRAKAKR 98
++ L L + V++WF NRR K KR
Sbjct: 129 IANQLGLEKDVVRVWFSNRRQKGKR 153
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein,
KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo
sapiens}
Length = 76
Score = 71.7 bits (176), Expect = 3e-17
Identities = 13/62 (20%), Positives = 27/62 (43%)
Query: 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
+ + +QL +L+ F Q+ +E + L+ +V+ WF +RR +
Sbjct: 6 SGASIYKNKKSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRN 65
Query: 99 LQ 100
L+
Sbjct: 66 LK 67
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 80
Score = 71.7 bits (176), Expect = 3e-17
Identities = 15/67 (22%), Positives = 32/67 (47%)
Query: 34 NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
+ + +++ RT T +QL L +K+ + + + L + V++WFQN R
Sbjct: 10 GGEEPQRDKRLRTTITPEQLEILYQKYLLDSNPTRKMLDHIAHEVGLKKRVVQVWFQNTR 69
Query: 94 AKAKRLQ 100
A+ ++
Sbjct: 70 ARERKSG 76
>3d1n_I POU domain, class 6, transcription factor 1; protein-DNA complex,
helix-turn-helix (HTH), DNA-binding, homeobox, nucleus,
transcription regulation; 2.51A {Homo sapiens}
Length = 151
Score = 72.0 bits (176), Expect = 2e-16
Identities = 20/78 (25%), Positives = 32/78 (41%)
Query: 21 SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHL 80
+ +G + + RK RT FT Q + +L F + + E E + L+
Sbjct: 73 LRNQEGQQNLMEFVGGEPSKKRKRRTSFTPQAIEALNAYFEKNPLPTGQEITEMAKELNY 132
Query: 81 TETQVKIWFQNRRAKAKR 98
V++WF NRR K
Sbjct: 133 DREVVRVWFSNRRQTLKN 150
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics; NMR {Homo sapiens}
Length = 70
Score = 69.3 bits (170), Expect = 2e-16
Identities = 16/63 (25%), Positives = 26/63 (41%)
Query: 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97
++PRT T QL L + F S + E + L + +K WF+N K +
Sbjct: 4 GSSGKRPRTRITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKER 63
Query: 98 RLQ 100
+
Sbjct: 64 QSG 66
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP:
a.4.1.1
Length = 73
Score = 69.8 bits (171), Expect = 2e-16
Identities = 14/61 (22%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Query: 41 NRKPRTPFTTQQLLSLEKKF-REKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
+ + + T Q+ LE F + ++ ++ LTE Q + WF+ R A+ +R
Sbjct: 2 SAQTVSGPTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRS 61
Query: 100 Q 100
+
Sbjct: 62 E 62
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 70
Score = 69.3 bits (170), Expect = 2e-16
Identities = 25/61 (40%), Positives = 40/61 (65%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
R+ RT FT +QL +LE F+E +Y + R + + +HL E +V++WF+NRRAK +R
Sbjct: 8 RRHRTIFTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSGP 67
Query: 102 A 102
+
Sbjct: 68 S 68
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA
complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P
2lkx_A* 2l7m_P
Length = 68
Score = 68.9 bits (169), Expect = 3e-16
Identities = 26/63 (41%), Positives = 42/63 (66%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
R+ RT FT+QQL LE F+ +Y ++ R E + +LTE +V++WF+NRRAK ++ +E
Sbjct: 4 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63
Query: 102 AEI 104
+
Sbjct: 64 FIV 66
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein,
DNA-binding, N gene regulation; 1.00A {Drosophila
melanogaster} PDB: 3lnq_A 3cmy_A
Length = 60
Score = 68.4 bits (168), Expect = 4e-16
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 45 RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
FT+ QL LEK F Y + R E + + LTE ++++WFQNRRAK ++ +
Sbjct: 3 HMTFTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRKQE 58
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription
regulation; HET: DNA; 2.00A {Drosophila melanogaster}
SCOP: a.4.1.1 PDB: 3a01_B
Length = 81
Score = 68.5 bits (168), Expect = 5e-16
Identities = 27/81 (33%), Positives = 42/81 (51%), Gaps = 3/81 (3%)
Query: 22 DSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLT 81
D + + RK R+ RT F+ QL LE+ F QY I R E + +LT
Sbjct: 2 DISDCESEPGIALKRKQ---RRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLT 58
Query: 82 ETQVKIWFQNRRAKAKRLQEA 102
E ++++WFQNRRA+ ++ +
Sbjct: 59 EARIQVWFQNRRARLRKQHTS 79
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 80
Score = 67.0 bits (164), Expect = 2e-15
Identities = 21/75 (28%), Positives = 41/75 (54%)
Query: 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
++ RT FT +Q+ +LEK+F Y + R ++ + L E ++++WF NRRAK
Sbjct: 3 SGSSGQRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKW 62
Query: 97 KRLQEAEIEKIKMSA 111
+R ++ ++ +
Sbjct: 63 RREEKLRNQRRQSGP 77
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the
DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 66.3 bits (162), Expect = 4e-15
Identities = 16/65 (24%), Positives = 30/65 (46%)
Query: 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
++ RT F QL +++ F + + + LT+ +++WFQN RAK +R
Sbjct: 5 SSGKRMRTSFKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRR 64
Query: 99 LQEAE 103
+
Sbjct: 65 NLLRQ 69
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA
binding helix- turn-helix motif, structural genomics,
NPPSFA; NMR {Mus musculus}
Length = 80
Score = 65.9 bits (161), Expect = 5e-15
Identities = 25/67 (37%), Positives = 40/67 (59%)
Query: 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKA 96
R+ RT FT QL LE F + +Y I R E + ++L E++V++WF+NRRAK
Sbjct: 3 SGSSGRRERTTFTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKC 62
Query: 97 KRLQEAE 103
++ Q+ +
Sbjct: 63 RQQQQQQ 69
>1bw5_A ISL-1HD, insulin gene enhancer protein ISL-1; DNA-binding protein,
homeodomain, LIM domain; NMR {Rattus norvegicus} SCOP:
a.4.1.1
Length = 66
Score = 65.1 bits (159), Expect = 7e-15
Identities = 13/60 (21%), Positives = 25/60 (41%)
Query: 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
+ RT +QL +L + + + L+ +++WFQN+R K K+
Sbjct: 3 TTRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKKRS 62
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac
development, riken structural genomics/proteomics
initiative, RSGI, transcription; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 72
Score = 65.1 bits (159), Expect = 1e-14
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 42 RKPRTPFTTQQLLSLEKKF-REKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
+ T Q+ LE F + ++ ++ LTE Q + WF+ R A+ +R +
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor,
homeodomain, domain swapping, structural oxford protein
production facility, OPPF; 2.70A {Homo sapiens}
Length = 66
Score = 61.7 bits (150), Expect = 1e-13
Identities = 13/58 (22%), Positives = 25/58 (43%)
Query: 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
+ T +Q+ L+ F + Q+ AE L +++K WF + R + +R
Sbjct: 4 HHHHHRKKTKEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQR 61
>1wi3_A DNA-binding protein SATB2; homeodomain, helix-turn-helix, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; NMR {Homo sapiens} SCOP: a.4.1.1
Length = 71
Score = 61.8 bits (150), Expect = 2e-13
Identities = 13/60 (21%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
Query: 40 PNRKPRTPFTTQQLLSLEKKFREKQ-YLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
+ RT + + L L+ + Y S+ L L + + +FQN+R K
Sbjct: 6 SGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVKH 65
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor,
structural genomics, loop insertion, NPPSFA; NMR {Homo
sapiens} SCOP: a.4.1.1
Length = 95
Score = 61.6 bits (149), Expect = 4e-13
Identities = 21/79 (26%), Positives = 28/79 (35%), Gaps = 15/79 (18%)
Query: 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAE---------------FSSSLHLT 81
R R + + L +E F E QY A+R E S +T
Sbjct: 3 SGSSGRGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVT 62
Query: 82 ETQVKIWFQNRRAKAKRLQ 100
+V WF NRR + KR
Sbjct: 63 SLKVYNWFANRRKEIKRRA 81
>2d5v_A Hepatocyte nuclear factor 6; transcription factor,
transcription-DNA complex; 2.00A {Rattus norvegicus}
PDB: 1s7e_A
Length = 164
Score = 62.2 bits (150), Expect = 1e-12
Identities = 17/65 (26%), Positives = 26/65 (40%)
Query: 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
+KPR FT Q +L F+E + S + S L L + V +F N R ++
Sbjct: 95 NTPKKPRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNARRRSLD 154
Query: 99 LQEAE 103
Sbjct: 155 KWLEH 159
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 89
Score = 58.5 bits (141), Expect = 4e-12
Identities = 14/64 (21%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
K +T Q+ LE F + + + AE L+ ++ WF RR +++
Sbjct: 17 FKEKTQ---GQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSMEQ 73
Query: 102 AEIE 105
A ++
Sbjct: 74 AVLD 77
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 75
Score = 57.6 bits (139), Expect = 7e-12
Identities = 16/63 (25%), Positives = 23/63 (36%), Gaps = 3/63 (4%)
Query: 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
K R P +QL +LE F + E S +T ++ WF RR K
Sbjct: 8 PTKYKERAP---EQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNA 64
Query: 99 LQE 101
+
Sbjct: 65 EET 67
>2ecb_A Zinc fingers and homeoboxes protein 1; homeobox domain,
transcription factor, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: a.4.1.1
Length = 89
Score = 53.8 bits (129), Expect = 3e-10
Identities = 13/62 (20%), Positives = 23/62 (37%), Gaps = 3/62 (4%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
K +T +QL L+ F L+ E + LT ++ WF ++ +E
Sbjct: 15 FKEKTA---EQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 71
Query: 102 AE 103
Sbjct: 72 KM 73
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation,
DNA-binding, POU domain, diabetes, disease mutation,
MODY3, transcription/DNA comple; 2.60A {Homo sapiens}
SCOP: a.4.1.1 a.35.1.1
Length = 194
Score = 50.6 bits (120), Expect = 2e-08
Identities = 18/112 (16%), Positives = 35/112 (31%), Gaps = 21/112 (18%)
Query: 8 FLNEILILSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLS 67
++ + ++ G + + K R+ R + L + + ++ S
Sbjct: 82 YVRKQREVAQQFTHAGQGGLIEEPTGDELPTKKGRRNRFKWGPASQQILFQAYERQKNPS 141
Query: 68 IAER---------------------AEFSSSLHLTETQVKIWFQNRRAKAKR 98
ER A+ S +TE +V WF NRR +
Sbjct: 142 KEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEVRVYNWFANRRKEEAF 193
>3nar_A ZHX1, zinc fingers and homeoboxes protein 1; corepressor,
homeodomain, structural genomics, oxford production
facility, OPPF, transcription; 2.60A {Homo sapiens}
Length = 96
Score = 46.7 bits (110), Expect = 2e-07
Identities = 14/69 (20%), Positives = 22/69 (31%)
Query: 38 HKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97
+ T +QL L+ F Q+ S E + + L T + WF + R K
Sbjct: 22 KSGSTGKICKKTPEQLHMLKSAFVRTQWPSPEEYDKLAKESGLARTDIVSWFGDTRYAWK 81
Query: 98 RLQEAEIEK 106
Sbjct: 82 NGNLKWYYY 90
>1lfb_A Liver transcription factor (LFB1); transcription regulation; 2.80A
{Rattus norvegicus} SCOP: a.4.1.1 PDB: 2lfb_A
Length = 99
Score = 46.4 bits (109), Expect = 2e-07
Identities = 17/92 (18%), Positives = 30/92 (32%), Gaps = 21/92 (22%)
Query: 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAE---------------------FSSS 77
K R+ R + L + + ++ S ER S
Sbjct: 7 KKGRRNRFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGS 66
Query: 78 LHLTETQVKIWFQNRRAKAKRLQEAEIEKIKM 109
+TE +V WF NRR + + ++ K+
Sbjct: 67 NLVTEVRVYNWFANRRKEEAFRHKLAMDTYKL 98
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo,
protein-DNA, human disease; 3.20A {Homo sapiens}
Length = 221
Score = 47.7 bits (112), Expect = 4e-07
Identities = 16/83 (19%), Positives = 26/83 (31%), Gaps = 21/83 (25%)
Query: 37 KHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAE---------------------FS 75
+K R+ R + L + + ++ S ER
Sbjct: 138 TNKKMRRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGL 197
Query: 76 SSLHLTETQVKIWFQNRRAKAKR 98
S +TE +V WF NRR +
Sbjct: 198 GSNLVTEVRVYNWFANRRKEEAF 220
>2cqx_A LAG1 longevity assurance homolog 5; homeodomain, DNA binding
domain, transcription, structural genomics, NPPSFA; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 72
Score = 44.4 bits (105), Expect = 5e-07
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 43 KPRTPFTTQQLLSLEKKFR-EKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97
K + +LEK F +Y S L + +++ WF++RR + K
Sbjct: 10 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 65
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain,
transcription factor, leucine zipper- containing factor,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
a.4.1.1
Length = 76
Score = 42.3 bits (99), Expect = 4e-06
Identities = 12/58 (20%), Positives = 21/58 (36%)
Query: 43 KPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
T +QL L+ F + Q+ + + L ++ WF + R K Q
Sbjct: 5 SSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three
helices with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 80
Score = 39.9 bits (92), Expect = 4e-05
Identities = 13/70 (18%), Positives = 29/70 (41%), Gaps = 6/70 (8%)
Query: 34 NLRKHKPNRKPRTPFTTQQLLSLEKKFRE----KQYLSIAERAEFSSSLHLTETQVKIWF 89
+ + RT F+ + L +L+K + + + ++ L++ V+ W
Sbjct: 3 SGSSGA--LQDRTQFSDRDLATLKKYWDNGMTSLGSVCREKIEAVATELNVDCEIVRTWI 60
Query: 90 QNRRAKAKRL 99
NRR K + +
Sbjct: 61 GNRRRKYRLM 70
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 38.9 bits (90), Expect = 7e-04
Identities = 25/102 (24%), Positives = 37/102 (36%), Gaps = 31/102 (30%)
Query: 28 PPK----LNVNLRKHKPNRKP---RTPFTTQQLLSLEKKFR-EKQYLSIAERAEFSSSLH 79
PP+ LN+ LRK K R PF+ E+K + ++L +A + F S L
Sbjct: 382 PPQSLYGLNLTLRKAKAPSGLDQSRIPFS-------ERKLKFSNRFLPVA--SPFHSHL- 431
Query: 80 LTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLY 121
L I K L + + I P+Y
Sbjct: 432 LVPASDLI--------NKDLVKNNVS-FNAKDIQI----PVY 460
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 37.1 bits (85), Expect = 0.001
Identities = 13/67 (19%), Positives = 22/67 (32%), Gaps = 17/67 (25%)
Query: 58 KKFREKQYLSIAERAEFSSSL-----------------HLTETQVKIWFQNRRAKAKRLQ 100
+K+RE+Q + E S + +E K NR A Q
Sbjct: 88 RKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAFYQ 147
Query: 101 EAEIEKI 107
+ + + I
Sbjct: 148 QPDADII 154
Score = 26.7 bits (58), Expect = 3.9
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 17/57 (29%)
Query: 68 IAE----RAEFSSSLHLTETQVKIWFQNRRAKAKRLQE--AEIEKIKMSAIAAARPH 118
IA+ E E+ K W + +R KRLQE A + ++ A+
Sbjct: 74 IAQADRLTQE-------PESIRK-WREEQR---KRLQELDAASKVMEQEWREKAKKD 119
>1x2m_A LAG1 longevity assurance homolog 6; homeobox domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Mus musculus}
SCOP: a.4.1.1
Length = 64
Score = 34.4 bits (79), Expect = 0.002
Identities = 11/43 (25%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
Query: 56 LEKKFREK-QYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97
LEK F ++ S L ++ WF+ RR + K
Sbjct: 15 LEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEK 57
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription
regulation, transcriptional repression, DNA- binding
protein; HET: DNA; 2.25A {Saccharomyces cerevisiae}
SCOP: a.4.1.1
Length = 87
Score = 35.2 bits (81), Expect = 0.002
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 16 SSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS 75
S N +N + + ++ +R + + L S K E YL
Sbjct: 7 KSADGLVFNVVTQDMINKSTKPYRGHRFTKE--NVRILESWFAKNIENPYLDTKGLENLM 64
Query: 76 SSLHLTETQVKIWFQNRRAKAK 97
+ L+ Q+K W NRR K K
Sbjct: 65 KNTSLSRIQIKNWVSNRRRKEK 86
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 34.8 bits (79), Expect = 0.013
Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 16/105 (15%)
Query: 12 ILILSSPLLSDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAER 71
IL+ + D L+ H T ++ SL K+ + + +
Sbjct: 268 ILLTTR----FKQVTD--FLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPRE 321
Query: 72 AEFSSSLHLTETQVKIW--FQNRRAKAKRLQEAEIEK----IKMS 110
++ L+ I ++ A + +K I+ S
Sbjct: 322 VLTTNPRRLS----IIAESIRDGLATWDNWKHVNCDKLTTIIESS 362
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain,
hoogsteen base PAIR, transcription/DNA complex; HET:
5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Length = 60
Score = 31.9 bits (73), Expect = 0.016
Identities = 11/35 (31%), Positives = 15/35 (42%)
Query: 65 YLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
YL + L+ Q+K W NRR K K +
Sbjct: 25 YLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKTI 59
>2e19_A Transcription factor 8; homeobox domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 64
Score = 31.9 bits (72), Expect = 0.017
Identities = 13/59 (22%), Positives = 24/59 (40%)
Query: 44 PRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEA 102
P L L+ + S E ++ + S++L VK WF+ +A +Q +
Sbjct: 6 SGQPPLKNLLSLLKAYYALNAQPSAEELSKIADSVNLPLDVVKKWFEKMQAGQISVQSS 64
>2nzz_A Penetratin conjugated GAS (374-394) peptide; conformational
analysis, G protein, GAS subunit, A2A adenosine
receptor, cell-penetrating peptides; NMR {Synthetic}
PDB: 2o00_A
Length = 37
Score = 30.8 bits (69), Expect = 0.025
Identities = 11/15 (73%), Positives = 13/15 (86%)
Query: 84 QVKIWFQNRRAKAKR 98
Q+KIWFQNRR K K+
Sbjct: 2 QIKIWFQNRRMKWKK 16
>1le8_B Mating-type protein alpha-2; matalpha2, isothermal titration
calorimetry, protein-DNA complex, transcription/DNA
complex; 2.30A {Saccharomyces cerevisiae} SCOP: a.4.1.1
PDB: 1akh_B* 1apl_C* 1yrn_B*
Length = 83
Score = 30.9 bits (70), Expect = 0.059
Identities = 14/53 (26%), Positives = 20/53 (37%)
Query: 65 YLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARP 117
YL + L+ Q+K W RRAK K + A +S A+
Sbjct: 29 YLDTKGLENLMKNTSLSRIQIKNWVAARRAKEKTITIAPELADLLSGEPLAKK 81
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding
cooperativity, maltose binding protein, MBP, sugar
binding, DNA binding protein; 2.10A {Escherichia coli}
SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A
Length = 421
Score = 31.3 bits (71), Expect = 0.16
Identities = 16/41 (39%), Positives = 26/41 (63%)
Query: 57 EKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97
E+ FR KQ L+ E+ E + +T QV++WF N+R ++K
Sbjct: 381 EQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 421
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 30.7 bits (68), Expect = 0.17
Identities = 6/30 (20%), Positives = 13/30 (43%), Gaps = 7/30 (23%)
Query: 100 QEAEIEKIKMSAIAAARPHPLYGPGPSPHL 129
++ ++K++ S LY +P L
Sbjct: 18 EKQALKKLQASL-------KLYADDSAPAL 40
Score = 26.1 bits (56), Expect = 6.9
Identities = 4/15 (26%), Positives = 8/15 (53%)
Query: 30 KLNVNLRKHKPNRKP 44
KL +L+ + + P
Sbjct: 24 KLQASLKLYADDSAP 38
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices
with the DNA binding helix- turn-helix motif, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 102
Score = 29.1 bits (64), Expect = 0.35
Identities = 15/90 (16%), Positives = 28/90 (31%), Gaps = 21/90 (23%)
Query: 39 KPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFS---------------------SS 77
+ + R + L + + ++ S ER S
Sbjct: 4 GSSGRNRFKWGPASQQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGS 63
Query: 78 LHLTETQVKIWFQNRRAKAKRLQEAEIEKI 107
+TE +V WF NRR + Q+ ++
Sbjct: 64 NLVTEVRVYNWFANRRKEEAFRQKLAMDAY 93
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast
structural genomics CON PSI-biology, transcription; NMR
{Homo sapiens}
Length = 89
Score = 28.6 bits (64), Expect = 0.43
Identities = 20/88 (22%), Positives = 31/88 (35%), Gaps = 3/88 (3%)
Query: 35 LRKHKPNRKPRTPF-TTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQN-- 91
+ H + P + Q L + R Y S E+A S HL+ QV WF N
Sbjct: 1 MGHHHHHHSHMLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINAR 60
Query: 92 RRAKAKRLQEAEIEKIKMSAIAAARPHP 119
RR L++ + + +
Sbjct: 61 RRLLPDMLRKDGKDPNQFTISRRGAKIS 88
>2ys9_A Homeobox and leucine zipper protein homez; homeodomain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 70
Score = 27.9 bits (61), Expect = 0.60
Identities = 12/55 (21%), Positives = 22/55 (40%)
Query: 46 TPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
P + LE+ + Q L + + S + L+ QV WF +R + +
Sbjct: 11 IPPPPPDIQPLERYWAAHQQLRETDIPQLSQASRLSTQQVLDWFDSRLPQPAEVS 65
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein,
protein/DNA complex; HET: DNA; 2.35A {Homo sapiens}
SCOP: a.4.1.1 PDB: 1lfu_P
Length = 87
Score = 27.5 bits (61), Expect = 0.93
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 65 YLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAA 115
Y S + E + +T +QV WF N+R + K+ E+ + A A
Sbjct: 28 YPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQEEANIYAAKTA 78
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding,
transcription, nucleus, phosphoprotein, DNA bindi
protein; 1.95A {Homo sapiens}
Length = 67
Score = 26.5 bits (59), Expect = 1.7
Identities = 11/40 (27%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 65 YLSIAERAEFSSSLHLTETQVKIWFQN-RRAKAKRLQEAE 103
Y S ++ + + LT QV WF N RR + + +
Sbjct: 25 YPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMIDQS 64
>3pgw_B SM B; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici
SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens}
PDB: 3cw1_A
Length = 231
Score = 27.7 bits (61), Expect = 2.2
Identities = 19/88 (21%), Positives = 23/88 (26%), Gaps = 5/88 (5%)
Query: 109 MSAIAAARPHPLYGP-----GPSPHLHQYFQHASPEALLHHPHPFSALLGRHPAMAHFMP 163
P L GP GPS + + A A P
Sbjct: 116 AGVPMPQAPAGLAGPVRGVGGPSQQVMTPQGRGTVAAAAAAATASIAGAPTQYPPGRGGP 175
Query: 164 AAPMPQNSPPGGSDMKASPPRPSPSPTM 191
PM + +PP G RP P M
Sbjct: 176 PPPMGRGAPPPGMMGPPPGMRPPMGPPM 203
>3s3u_A Cysteine transferase; autoproteolytic, carbapenem, biosynthesis,
DOM-fold, amidohy transferase; 1.60A {Streptomyces
cattleya}
Length = 419
Score = 27.9 bits (61), Expect = 2.3
Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 1/47 (2%)
Query: 143 HHPHPFSALLGRHPAMAHFMPAAPMPQNSPPGGSDMKASPPRPSPSP 189
HH H S L+ R M + S + P P
Sbjct: 6 HHHHHSSGLVPRGSHMDPEAGSRARGLKGVHRVSAN-SGGIGGVPGP 51
>1wh7_A ZF-HD homeobox family protein; homeobox domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; NMR {Arabidopsis thaliana} SCOP:
a.4.1.1
Length = 80
Score = 26.1 bits (57), Expect = 2.6
Identities = 17/83 (20%), Positives = 28/83 (33%), Gaps = 11/83 (13%)
Query: 21 SDSNKGDPPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSI-----AERAEFS 75
S + G P + K + RT FT +Q + F E+ I +F
Sbjct: 2 SSGSSGSNPSSSGGTTK-----RFRTKFTAEQKEKMLA-FAERLGWRIQKHDDVAVEQFC 55
Query: 76 SSLHLTETQVKIWFQNRRAKAKR 98
+ + +KIW N +
Sbjct: 56 AETGVRRQVLKIWMHNNKNSGPS 78
>2da7_A Zinc finger homeobox protein 1B; homeobox domain, three helices
with the DNA binding helix- turn-helix motif,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 71
Score = 25.9 bits (56), Expect = 2.6
Identities = 9/55 (16%), Positives = 20/55 (36%)
Query: 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
+ + L+ + + E + S ++ L + VK WF+ R+
Sbjct: 5 SSGSPINPYKDHMSVLKAYYAMNMEPNSDELLKISIAVGLPQEFVKEWFEQRKVY 59
>1s1e_A KV channel interacting protein 1; kchip, calcium-binding protein,
EF-finger, transport protein; 2.30A {Homo sapiens}
SCOP: a.39.1.5
Length = 224
Score = 27.3 bits (60), Expect = 2.7
Identities = 10/61 (16%), Positives = 22/61 (36%), Gaps = 4/61 (6%)
Query: 30 KLNVNLRKHKP----NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQV 85
+L + + H+P + +T FT ++L L + F+ + + F
Sbjct: 26 ELEMTMVCHRPEGLEQLEAQTNFTKRELQVLYRGFKNECPSGVVNEETFKQIYAQFFPHG 85
Query: 86 K 86
Sbjct: 86 D 86
>1du6_A PBX1, homeobox protein PBX1; homeodomain, gene regulation; NMR
{Mus musculus} SCOP: a.4.1.1
Length = 64
Score = 25.7 bits (57), Expect = 2.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Query: 65 YLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
Y S + E + +T +QV WF N+R + K+
Sbjct: 30 YPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 63
>3i2w_A Syndapin, LD46328P; EFC, FBAR, SH3 domain, endocytosis; 2.67A
{Drosophila melanogaster}
Length = 290
Score = 27.5 bits (60), Expect = 3.2
Identities = 5/76 (6%), Positives = 29/76 (38%)
Query: 34 NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
+ + N + + Q+ + + ++ + R ++ ++ ++ ++
Sbjct: 153 SATNQERNANADSSLSPDQVKKMHDRVQKTKDQVQKCREKYEQAIAEITKYNSVYIEDMT 212
Query: 94 AKAKRLQEAEIEKIKM 109
+ ++ Q E +++
Sbjct: 213 SVFEKCQTFEKTRLQF 228
>3m73_A Tellurite resistance protein TEHA homolog; anion channel, alpha
helical integral membrane protein, STRU genomics, PSI-2;
HET: BOG; 1.15A {Haemophilus influenzae} PDB: 3m75_A*
3m74_A* 3m77_A* 3m71_A* 3m7b_A* 3m7c_A* 3m7e_A* 3m7l_A*
3m78_A* 3m76_A* 3m72_A*
Length = 314
Score = 27.2 bits (60), Expect = 3.3
Identities = 5/27 (18%), Positives = 9/27 (33%), Gaps = 1/27 (3%)
Query: 141 LLHHPHPFSALLGRHPAMAHFMPAAPM 167
L ++ A P F+ P+
Sbjct: 63 LRYYFEEVRAEY-HSPVRFSFIALIPI 88
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian,
protein-DNA complex, HOX hexapeptide, TALE homeodomain,
homeodomain interaction; 1.90A {Homo sapiens} SCOP:
a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Length = 73
Score = 25.8 bits (57), Expect = 3.5
Identities = 12/41 (29%), Positives = 17/41 (41%), Gaps = 2/41 (4%)
Query: 65 YLSIAERAEFSSSLHLTETQVKIWFQN--RRAKAKRLQEAE 103
Y S + E + +T +QV WF N R K + E
Sbjct: 28 YPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQE 68
>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein,
abnormal nuclear; zinc-finger, beta barrel, VWA domain,
gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP:
a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1
Length = 926
Score = 27.1 bits (59), Expect = 4.6
Identities = 7/40 (17%), Positives = 13/40 (32%)
Query: 153 GRHPAMAHFMPAAPMPQNSPPGGSDMKASPPRPSPSPTMT 192
H + QN+ P + PP+ + M+
Sbjct: 2 SHHKKRVYPQAQLQYGQNATPLQQPAQFMPPQDPAAAGMS 41
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 27.1 bits (61), Expect = 4.9
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 66 LSIAERAEFSSSLHLTETQVKI 87
+S+ E F L LTE + +I
Sbjct: 150 MSVTEALAFFDGLELTEKEAQI 171
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein,
X-linked TGF(beta) induced transcription factor 2-like
protein, TGIF-like on the X; NMR {Homo sapiens}
Length = 83
Score = 25.5 bits (56), Expect = 5.0
Identities = 14/49 (28%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Query: 65 YLSIAERAEFSSSLHLTETQVKIWFQN--RRAKAKRLQEAEIEKIKMSA 111
Y S E+ S +L+ Q+ WF N RR LQ+ + S+
Sbjct: 34 YPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQRRNDPSGPSS 82
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 27.0 bits (61), Expect = 5.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Query: 66 LSIAERAEFSSSLHLTETQVKI 87
LSI+E EF +L+LTE + +I
Sbjct: 412 LSISEELEFLKNLNLTEREREI 433
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, at cassette, DNA damage, DNA
excision; HET: ADP; 3.20A {Geobacillus
stearothermophilus} PDB: 3uwx_A
Length = 972
Score = 26.7 bits (60), Expect = 5.4
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 66 LSIAERAEFSSSLHLTETQVKI 87
+S+ E F L LTE + +I
Sbjct: 452 MSVTEALAFFDGLELTEKEAQI 473
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair;
3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Length = 993
Score = 26.7 bits (60), Expect = 6.1
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 66 LSIAERAEFSSSLHLTETQVKI 87
LSIA+ A+F ++L L + I
Sbjct: 469 LSIADCADFLNALTLGPREQAI 490
>4etn_A LMPTP, low molecular weight protein-tyrosine-phosphatase;
dephosphorylation, hydrolase; 1.10A {Bacillus subtilis}
PDB: 4eti_A 1zgg_A
Length = 184
Score = 26.1 bits (58), Expect = 6.9
Identities = 10/30 (33%), Positives = 12/30 (40%)
Query: 143 HHPHPFSALLGRHPAMAHFMPAAPMPQNSP 172
HH H S L+ R MA M + S
Sbjct: 6 HHHHHSSGLVPRGSHMASMTGGQQMGRGSM 35
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer,
alternative splicing, apoptosis, cytoplasm, endoplasmic
reticulum, golgi apparatus; NMR {Mus musculus}
Length = 256
Score = 26.2 bits (57), Expect = 7.0
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 8/70 (11%)
Query: 19 LLSDSNKGDPPKLNVNLRKHKPNRKPR--------TPFTTQQLLSLEKKFREKQYLSIAE 70
+LS + + L +P T FT ++L SL + F+ + + +
Sbjct: 51 ILSSAAPQGSDSSDSELELSTVRHQPEGLDQLQAQTKFTKKELQSLYRGFKNECPTGLVD 110
Query: 71 RAEFSSSLHL 80
F
Sbjct: 111 EDTFKLIYSQ 120
>4dgw_C PRE-mRNA-splicing factor PRP11; zinc finger; 3.11A {Saccharomyces
cerevisiae}
Length = 231
Score = 25.9 bits (56), Expect = 7.7
Identities = 11/47 (23%), Positives = 15/47 (31%), Gaps = 9/47 (19%)
Query: 30 KLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFRE---KQYLSIAERAE 73
K N K P + LE + K++L IA E
Sbjct: 129 KENSVDSDDKAKVPPLIRIVS----GLELSDTKQKGKKFLVIA--YE 169
>3m3w_A Pacsin3, protein kinase C and casein kinase II substrate P; mouse,
BAR domain, endocytosis; 2.60A {Mus musculus} PDB:
3qe6_A
Length = 320
Score = 25.9 bits (56), Expect = 8.4
Identities = 8/76 (10%), Positives = 29/76 (38%)
Query: 34 NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
+ + + K + + +QL L+++ + + ++ +L + ++
Sbjct: 166 TAQTRESHAKADSSMSQEQLRKLQERVGRCTKEAEKMKTQYEQTLAELNRYTPRYMEDME 225
Query: 94 AKAKRLQEAEIEKIKM 109
+ Q AE +++
Sbjct: 226 QAFESCQAAERQRLLF 241
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann
fold, ADP-binding, transferase; HET: ADP; 2.30A
{Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Length = 485
Score = 26.0 bits (58), Expect = 9.4
Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 14/52 (26%)
Query: 127 PHLHQYFQHASPEALLHHPHPFSALLGRHPAMAHFMPAAPMPQNSPPGGSDM 178
L A+ H +G + ++H M A G D
Sbjct: 331 VALEGALLAAA----SRHHGRVGVAIGYNEPLSHLMQA----------GCDA 368
>3abh_A Pacsin2, protein kinase C and casein kinase substrate in neurons
protein 2; helix bundle, coiled-coil, endocytosis; 2.00A
{Homo sapiens} PDB: 3q0k_A 3lll_A 3hah_A 3qni_A 3hai_A
3q84_A
Length = 312
Score = 25.9 bits (56), Expect = 9.4
Identities = 11/75 (14%), Positives = 30/75 (40%)
Query: 35 LRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRA 94
+ N K +QL L+ K + + + + ++ SL + + +N
Sbjct: 176 AISREANSKADPSLNPEQLKKLQDKIEKCKQDVLKTKEKYEKSLKELDQGTPQYMENMEQ 235
Query: 95 KAKRLQEAEIEKIKM 109
++ Q+ E ++++
Sbjct: 236 VFEQCQQFEEKRLRF 250
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein,
hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Length = 138
Score = 25.4 bits (55), Expect = 9.6
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 163 PAAPMPQNSPPGGSDMKASPPRPSPSPT 190
+ P P +SPP P P PSP+
Sbjct: 113 VSMPPPSSSPPSSVM--PPPVMPPPSPS 138
>1xrs_A D-lysine 5,6-aminomutase alpha subunit; TIM barrel, rossmann
domain, PLP, cobalamin, 5'-deoxyad radical,
adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium
sticklandii} SCOP: c.1.19.4
Length = 516
Score = 25.9 bits (57), Expect = 9.6
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 1/65 (1%)
Query: 66 LSIAERAEFSSSLHLTETQVKIW-FQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPG 124
+ E A+ S+ L T++ + + KA + + +EKIK + YG
Sbjct: 89 KTPQEIAQAISAGELDLTKLPMKDLFEVKTKALSMAKETVEKIKNNRSIRESRFEEYGDK 148
Query: 125 PSPHL 129
P L
Sbjct: 149 SGPLL 153
>3dzy_A Retinoic acid receptor RXR-alpha; DNA-binding, HOST-virus
interaction, metal-binding, nucleus, receptor,
transcription, transcription regulation, zinc-FIN
activator; HET: DNA REA BRL; 3.10A {Homo sapiens} PDB:
3dzu_A* 3e00_A*
Length = 467
Score = 25.8 bits (56), Expect = 9.8
Identities = 24/84 (28%), Positives = 28/84 (33%), Gaps = 5/84 (5%)
Query: 109 MSAIAAARPHPLYGPGPS--PHLHQYFQHASPEALLHHPHPFSALLGRHPAMAHFMPAAP 166
++AA HP GPG LH S P PFS + P H M
Sbjct: 30 RGSMAAPSLHPSLGPGIGSPGQLHSPISTLSSPINGMGP-PFS--VISSPMGPHSMSVPT 86
Query: 167 MPQNSPPGGSDMKASPPRPSPSPT 190
P GS +SP P S
Sbjct: 87 TPTLGFSTGSPQLSSPMNPVSSSE 110
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.131 0.393
Gapped
Lambda K H
0.267 0.0753 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,988,696
Number of extensions: 174304
Number of successful extensions: 638
Number of sequences better than 10.0: 1
Number of HSP's gapped: 600
Number of HSP's successfully gapped: 133
Length of query: 192
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 104
Effective length of database: 4,244,745
Effective search space: 441453480
Effective search space used: 441453480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (24.5 bits)