RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3429
(192 letters)
>d1pufa_ a.4.1.1 (A:) Homeobox protein hox-a9 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 77
Score = 94.1 bits (234), Expect = 2e-26
Identities = 32/68 (47%), Positives = 41/68 (60%)
Query: 34 NLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
N + RK R P+T Q L LEK+F YL+ R E + L+LTE QVKIWFQNRR
Sbjct: 6 NWLHARSTRKKRCPYTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRR 65
Query: 94 AKAKRLQE 101
K K++ +
Sbjct: 66 MKMKKINK 73
>d2cuea1 a.4.1.1 (A:7-74) Paired box protein pax6 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 68
Score = 90.6 bits (225), Expect = 4e-25
Identities = 21/65 (32%), Positives = 40/65 (61%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
++ RT FT +Q+ +LEK+F Y + R ++ + L E ++++WF NRRAK +R ++
Sbjct: 2 QRNRTSFTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREEK 61
Query: 102 AEIEK 106
++
Sbjct: 62 LRNQR 66
>d2craa1 a.4.1.1 (A:7-64) Homeobox protein hox-b13 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 58
Score = 89.2 bits (221), Expect = 1e-24
Identities = 22/57 (38%), Positives = 38/57 (66%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
RK R P++ QL LE+++ ++++ +R + S++ L+E Q+ IWFQNRR K K+
Sbjct: 2 RKKRIPYSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 58
>d2e1oa1 a.4.1.1 (A:8-64) Homeobox protein prh {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 88.3 bits (219), Expect = 3e-24
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
+ + F+ Q + LEKKF ++YLS ER + L L+E QVK WFQNRRAK +R
Sbjct: 1 KGGQVRFSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRR 57
>d9anta_ a.4.1.1 (A:) Antennapedia Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 56
Score = 87.1 bits (216), Expect = 6e-24
Identities = 27/54 (50%), Positives = 35/54 (64%)
Query: 45 RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
R +T Q L LEK+F +YL+ R E + +L LTE Q+KIWFQNRR K K+
Sbjct: 1 RQTYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 54
>d1ig7a_ a.4.1.1 (A:) Msx-1 homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 58
Score = 85.4 bits (211), Expect = 4e-23
Identities = 53/58 (91%), Positives = 56/58 (96%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
RKPRTPFTT QLL+LE+KFR+KQYLSIAERAEFSSSL LTETQVKIWFQNRRAKAKRL
Sbjct: 1 RKPRTPFTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKRL 58
>d1p7ia_ a.4.1.1 (A:) Engrailed Homeodomain {Drosophila
melanogaster [TaxId: 7227]}
Length = 53
Score = 82.2 bits (203), Expect = 5e-22
Identities = 27/53 (50%), Positives = 38/53 (71%)
Query: 43 KPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
+PRT F+++QL L+++F E +YL+ R + SS L L E Q+KIWFQN RAK
Sbjct: 1 RPRTAFSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFQNARAK 53
>d1bw5a_ a.4.1.1 (A:) Insulin gene enhancer protein isl-1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 66
Score = 82.6 bits (204), Expect = 6e-22
Identities = 13/57 (22%), Positives = 25/57 (43%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
+ RT +QL +L + + + L+ +++WFQN+R K K+
Sbjct: 4 TRVRTVLNEKQLHTLRTCYAANPRPDALMKEQLVEMTGLSPRVIRVWFQNKRCKDKK 60
>d1au7a1 a.4.1.1 (A:103-160) Pit-1 POU homeodomain {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 58
Score = 82.3 bits (203), Expect = 6e-22
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 43 KPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
K RT + +LE+ F E S E + L+L + V++WF NRR + KR++
Sbjct: 1 KRRTTISIAAKDALERHFGEHSKPSSQEIMRMAEELNLEKEVVRVWFCNRRQREKRVK 58
>d1ftta_ a.4.1.1 (A:) Thyroid transcription factor 1 homeodomain
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 68
Score = 81.5 bits (201), Expect = 1e-21
Identities = 30/62 (48%), Positives = 42/62 (67%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
RK R F+ Q+ LE++F++++YLS ER +S +HLT TQVKIWFQN R K KR +
Sbjct: 3 RKRRVLFSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62
Query: 102 AE 103
+
Sbjct: 63 DK 64
>d1fjla_ a.4.1.1 (A:) Paired protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 65
Score = 80.0 bits (197), Expect = 4e-21
Identities = 24/61 (39%), Positives = 37/61 (60%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
R+ RT F+ QL LE+ F QY I R E + +LTE ++++WFQNRRA+ ++
Sbjct: 3 RRSRTTFSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQHT 62
Query: 102 A 102
+
Sbjct: 63 S 63
>d1zq3p1 a.4.1.1 (P:2-68) Homeotic bicoid protein {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 67
Score = 80.4 bits (198), Expect = 5e-21
Identities = 25/65 (38%), Positives = 39/65 (60%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
R+ RT FT+ Q+ LE+ F + +YL+ A+ S+ L L QVKIWF+NRR + K +
Sbjct: 2 RRTRTTFTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 61
Query: 102 AEIEK 106
++
Sbjct: 62 QHKDQ 66
>d1jgga_ a.4.1.1 (A:) Even-skipped homeodomain {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 57
Score = 79.6 bits (196), Expect = 6e-21
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 43 KPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
+ RT FT QL LEK+F ++ Y+S R E ++ L+L E+ +K+WFQNRR K KR
Sbjct: 1 RYRTAFTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 56
>d1yz8p1 a.4.1.1 (P:1-60) Pituitary homeobox 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 60
Score = 79.2 bits (195), Expect = 8e-21
Identities = 25/59 (42%), Positives = 40/59 (67%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
R+ RT FT+QQL LE F+ +Y ++ R E + +LTE +V++WF+NRRAK ++ +
Sbjct: 2 RRQRTHFTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKRE 60
>d1s7ea1 a.4.1.1 (A:103-152) Hepatocyte nuclear factor 6 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 50
Score = 78.4 bits (193), Expect = 1e-20
Identities = 16/50 (32%), Positives = 22/50 (44%)
Query: 44 PRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRR 93
PR FT Q +L F+E + S + S L L + V +F N R
Sbjct: 1 PRLVFTDVQRRTLHAIFKENKRPSKELQITISQQLGLELSTVSNFFMNAR 50
>d1b72a_ a.4.1.1 (A:) Homeobox protein hox-b1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 88
Score = 78.5 bits (193), Expect = 3e-20
Identities = 35/73 (47%), Positives = 44/73 (60%)
Query: 28 PPKLNVNLRKHKPNRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKI 87
P V+ RT FTT+QL LEK+F +YLS A R E +++L L ETQVKI
Sbjct: 14 PKTAKVSEPGLGSPSGLRTNFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKI 73
Query: 88 WFQNRRAKAKRLQ 100
WFQNRR K K+ +
Sbjct: 74 WFQNRRMKQKKRE 86
>d1le8a_ a.4.1.1 (A:) Mating type protein A1 Homeodomain {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 53
Score = 76.5 bits (188), Expect = 8e-20
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 45 RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97
++ + Q LE+ FR KQ L+ E+ E + +T QV++WF N+R ++K
Sbjct: 1 KSSISPQARAFLEQVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMRSK 53
>d2cufa1 a.4.1.1 (A:8-89) Homeobox-containing protein 1, HMBOX1
(Flj21616) {Human (Homo sapiens) [TaxId: 9606]}
Length = 82
Score = 76.2 bits (187), Expect = 2e-19
Identities = 21/72 (29%), Positives = 28/72 (38%), Gaps = 15/72 (20%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAE---------------FSSSLHLTETQVK 86
R R + + L +E F E QY A+R E S +T +V
Sbjct: 1 RGSRFTWRKECLAVMESYFNENQYPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVY 60
Query: 87 IWFQNRRAKAKR 98
WF NRR + KR
Sbjct: 61 NWFANRRKEIKR 72
>d1ocpa_ a.4.1.1 (A:) Oct-3 POU Homeodomain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 67
Score = 75.0 bits (184), Expect = 5e-19
Identities = 18/57 (31%), Positives = 29/57 (50%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
++ RT + SLE F + S+ + ++ L L + V++WF NRR K KR
Sbjct: 9 KRKRTSIENRVRWSLETMFLKCPKPSLQQITHIANQLGLEKDVVRVWFCNRRQKGKR 65
>d1vnda_ a.4.1.1 (A:) VND/NK-2 protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 77
Score = 72.8 bits (178), Expect = 4e-18
Identities = 32/62 (51%), Positives = 40/62 (64%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
RK R FT Q LE++FR+++YLS ER +S + LT TQVKIWFQN R K KR Q
Sbjct: 10 RKRRVLFTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQN 69
Query: 102 AE 103
+
Sbjct: 70 EK 71
>d1pufb_ a.4.1.1 (B:) pbx1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 72.3 bits (177), Expect = 7e-18
Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%)
Query: 42 RKPRTPFTTQQLLSLEKKFRE---KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
R+ R F Q L + F Y S + E + +T +QV WF N+R + K+
Sbjct: 2 RRKRRNFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKK 61
Query: 99 LQEAEIE 105
E
Sbjct: 62 NIGKFQE 68
>d1e3oc1 a.4.1.1 (C:104-160) Oct-1 POU Homeodomain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 57
Score = 71.1 bits (174), Expect = 1e-17
Identities = 18/55 (32%), Positives = 30/55 (54%)
Query: 45 RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRL 99
RT T ++LEK F E Q + + + L++ + +++WF NRR K KR+
Sbjct: 2 RTSIETNIRVALEKSFMENQKPTSEDITLIAEQLNMEKEVIRVWFSNRRQKEKRI 56
>d1x2na1 a.4.1.1 (A:6-67) Homeobox protein pknox1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 62
Score = 68.2 bits (167), Expect = 1e-16
Identities = 11/58 (18%), Positives = 21/58 (36%), Gaps = 3/58 (5%)
Query: 41 NRKPRTPFTTQQLLSLEKKFREKQ---YLSIAERAEFSSSLHLTETQVKIWFQNRRAK 95
+ R + + Y + E+ + ++ +LT QV WF N R +
Sbjct: 2 GKNKRGVLPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRR 59
>d1uhsa_ a.4.1.1 (A:) Homeodomain-only protein, Hop {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 72
Score = 68.5 bits (167), Expect = 2e-16
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Query: 42 RKPRTPFTTQQLLSLEKKF-REKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
+ T Q+ LE F + ++ ++ LTE Q + WF+ R A+ +R +
Sbjct: 2 SEGAATMTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSE 61
>d1k61a_ a.4.1.1 (A:) mat alpha2 Homeodomain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 60
Score = 67.9 bits (166), Expect = 2e-16
Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 5/61 (8%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQ---YLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
R R FT + + LE F + YL + L+ Q+K W NRR K K
Sbjct: 1 RGHR--FTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58
Query: 99 L 99
+
Sbjct: 59 I 59
>d1x2ma1 a.4.1.1 (A:8-59) Lag1 longevity assurance homolog 6,
LASS6 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 52
Score = 66.3 bits (162), Expect = 7e-16
Identities = 13/51 (25%), Positives = 19/51 (37%), Gaps = 1/51 (1%)
Query: 49 TTQQLLSLEKKFRE-KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKR 98
T Q LEK F ++ S L ++ WF+ RR + K
Sbjct: 1 TAQPNAILEKVFTAITKHPDEKRLEGLSKQLDWDVRSIQRWFRQRRNQEKP 51
>d1wi3a_ a.4.1.1 (A:) DNA-binding protein SATB2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 71
Score = 65.9 bits (160), Expect = 2e-15
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 1/61 (1%)
Query: 39 KPNRKPRTPFTTQQLLSLEKKFRE-KQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97
+ RT + + L L+ + Y S+ L L + + +FQN+R K
Sbjct: 5 SSGPRSRTKISLEALGILQSFIHDVGLYPDQEAIHTLSAQLDLPKHTIIKFFQNQRYHVK 64
Query: 98 R 98
Sbjct: 65 H 65
>d2cqxa1 a.4.1.1 (A:8-66) LAG1 longevity assurance homolog 5,
LASS5 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 59
Score = 63.2 bits (154), Expect = 1e-14
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
Query: 43 KPRTPFTTQQLLSLEKKF-REKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAK 97
K + +LEK F +Y S L + +++ WF++RR + K
Sbjct: 3 KDSPVNKVEPNDTLEKVFVSVTKYPDEKRLKGLSKQLDWSVRKIQCWFRHRRNQDK 58
>d1lfba_ a.4.1.1 (A:) Hepatocyte nuclear factor 1a (LFB1/HNF1) {Rat
(Rattus rattus) [TaxId: 10117]}
Length = 78
Score = 64.0 bits (155), Expect = 1e-14
Identities = 13/78 (16%), Positives = 23/78 (29%), Gaps = 21/78 (26%)
Query: 45 RTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLH---------------------LTET 83
R + L + + ++ S ER + +TE
Sbjct: 1 RFKWGPASQQILFQAYERQKNPSKEERETLVEECNRAECIQRGVSPSQAQGLGSNLVTEV 60
Query: 84 QVKIWFQNRRAKAKRLQE 101
+V WF NRR + +
Sbjct: 61 RVYNWFANRRKEEAFRHK 78
>d2ecba1 a.4.1.1 (A:8-83) Zinc fingers and homeoboxes protein 1,
ZHX1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 59.7 bits (144), Expect = 4e-13
Identities = 12/62 (19%), Positives = 22/62 (35%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQE 101
+ T +QL L+ F L+ E + LT ++ WF ++ +E
Sbjct: 5 PQKFKEKTAEQLRVLQASFLNSSVLTDEELNRLRAQTKLTRREIDAWFTEKKKSKALKEE 64
Query: 102 AE 103
Sbjct: 65 KM 66
>d2ecca1 a.4.1.1 (A:1-76) Homeobox-leucine zipper protein Homez
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 57.4 bits (138), Expect = 3e-12
Identities = 12/60 (20%), Positives = 22/60 (36%)
Query: 41 NRKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQ 100
+ T +QL L+ F + Q+ + + L ++ WF + R K Q
Sbjct: 3 SGSSGKRKTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHGQ 62
>d1wh7a_ a.4.1.1 (A:) ZF-HD homeobox protein At4g24660 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 80
Score = 56.6 bits (136), Expect = 6e-12
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 37 KHKPNRKPRTPFTTQQLLSLEKKFREK----QYLSIAERAEFSSSLHLTETQVKIWFQNR 92
++ RT FT +Q + Q +F + + +KIW N
Sbjct: 13 SGGTTKRFRTKFTAEQKEKMLAFAERLGWRIQKHDDVAVEQFCAETGVRRQVLKIWMHNN 72
Query: 93 RAKAKR 98
+
Sbjct: 73 KNSGPS 78
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase {White-rot
fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 28.8 bits (63), Expect = 0.36
Identities = 9/94 (9%), Positives = 19/94 (20%), Gaps = 7/94 (7%)
Query: 80 LTETQV-KIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSPH-LHQYFQHAS 137
++ ++ + L ++ I A G + L
Sbjct: 236 FPAVACERVVRNALNSEIESLHIHDLISGDRFEIKADVYVLTAGAVHNTQLLVNSGFGQL 295
Query: 138 PEALLHHPHPFSALLGRHPAMAHFMPAAPMPQNS 171
+P +H M N
Sbjct: 296 GRPNPTNPPELL-----PSLGSHRMGFDEKEDNC 324
>d1kxla_ b.40.4.3 (A:) CDC13 ssDNA-binding domain {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 187
Score = 27.9 bits (62), Expect = 0.54
Identities = 11/45 (24%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Query: 30 KLNVNLRKHKP--NRKPRTPFTTQQLLSLEKKFREKQYLSIAERA 72
KLN +R+ +P + + + + Q L F ++ + I E A
Sbjct: 130 KLNAIVRECEPVPHSQISSIASPSQCEHLR-LFYQRAFKRIGESA 173
>d1xrsa_ c.1.19.4 (A:) D-lysine 5,6-aminomutase alpha subunit, KamD
{Clostridium sticklandii [TaxId: 1511]}
Length = 516
Score = 26.7 bits (59), Expect = 2.2
Identities = 16/63 (25%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 68 IAERAEFSSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKIKMSAIAAARPHPLYGPGPSP 127
IA+ + L LT+ +K + KA + + +EKIK + YG P
Sbjct: 94 IAQAIS-AGELDLTKLPMKD-LFEVKTKALSMAKETVEKIKNNRSIRESRFEEYGDKSGP 151
Query: 128 HLH 130
L+
Sbjct: 152 LLY 154
>d2bdea1 c.108.1.23 (A:2-459) Cytosolic IMP-GMP specific
5'-nucleotidase {Legionella pneumophila [TaxId: 446]}
Length = 458
Score = 26.4 bits (58), Expect = 2.3
Identities = 9/55 (16%), Positives = 16/55 (29%)
Query: 98 RLQEAEIEKIKMSAIAAARPHPLYGPGPSPHLHQYFQHASPEALLHHPHPFSALL 152
R E M+ + +Y G + + E L H + +L
Sbjct: 255 RFLSVNPENGTMTNVHGPIVPGVYQGGNAKKFTEDLGVGGDEILYIGDHIYGDIL 309
>d1w0ta_ a.4.1.4 (A:) DNA-binding domain of human telomeric
protein, hTRF1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 52
Score = 23.7 bits (51), Expect = 3.8
Identities = 7/35 (20%), Positives = 15/35 (42%)
Query: 42 RKPRTPFTTQQLLSLEKKFREKQYLSIAERAEFSS 76
R+ + L S +K+ E + I +F++
Sbjct: 2 RQAWLWEEDKNLRSGVRKYGEGNWSKILLHYKFNN 36
>d1tx9a1 a.84.1.1 (A:7-144) Scaffolding protein gpD of bacteriophage
procapsid {Bacteriophage phi-X174 [TaxId: 10847]}
Length = 138
Score = 24.2 bits (52), Expect = 8.6
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 6/34 (17%)
Query: 75 SSSLHLTE------TQVKIWFQNRRAKAKRLQEA 102
S+ L LTE T K+W R++A+R EA
Sbjct: 18 SAVLDLTEDDFDFLTSNKVWIATDRSRARRCVEA 51
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.131 0.393
Gapped
Lambda K H
0.267 0.0654 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 716,683
Number of extensions: 32606
Number of successful extensions: 148
Number of sequences better than 10.0: 1
Number of HSP's gapped: 139
Number of HSP's successfully gapped: 48
Length of query: 192
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 112
Effective length of database: 1,309,196
Effective search space: 146629952
Effective search space used: 146629952
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.2 bits)