Query psy3430
Match_columns 121
No_of_seqs 235 out of 1047
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 16:31:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3430.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3430hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0604 Qor NADPH:quinone redu 100.0 5.4E-28 1.2E-32 177.5 11.1 116 4-119 37-170 (326)
2 COG1064 AdhP Zn-dependent alco 99.9 6.8E-27 1.5E-31 170.9 8.6 102 18-121 56-195 (339)
3 KOG1197|consensus 99.9 8.3E-25 1.8E-29 153.6 10.0 114 1-121 53-176 (336)
4 KOG0025|consensus 99.9 6.7E-23 1.4E-27 146.0 11.1 110 4-119 68-188 (354)
5 TIGR02818 adh_III_F_hyde S-(hy 99.9 1.7E-21 3.7E-26 144.8 12.3 102 18-120 54-214 (368)
6 PLN02586 probable cinnamyl alc 99.9 2.1E-21 4.6E-26 144.1 11.1 102 18-120 65-211 (360)
7 TIGR02822 adh_fam_2 zinc-bindi 99.9 3.9E-21 8.5E-26 141.1 12.3 100 19-120 56-193 (329)
8 cd08281 liver_ADH_like1 Zinc-d 99.9 4.2E-21 9E-26 142.7 12.6 102 18-120 60-220 (371)
9 KOG0023|consensus 99.9 5.8E-22 1.3E-26 142.9 6.9 103 17-121 63-210 (360)
10 TIGR02825 B4_12hDH leukotriene 99.9 7.2E-21 1.6E-25 138.8 12.6 99 19-120 57-167 (325)
11 cd08239 THR_DH_like L-threonin 99.9 7E-21 1.5E-25 139.5 11.2 100 19-120 54-192 (339)
12 PLN02740 Alcohol dehydrogenase 99.9 6.3E-21 1.4E-25 142.3 11.0 102 18-120 64-227 (381)
13 cd08301 alcohol_DH_plants Plan 99.9 1.4E-20 3.1E-25 139.6 12.3 102 18-120 55-216 (369)
14 cd08293 PTGR2 Prostaglandin re 99.8 9.3E-21 2E-25 138.9 11.0 102 18-121 67-185 (345)
15 PRK09880 L-idonate 5-dehydroge 99.8 9.4E-21 2E-25 139.5 11.0 100 18-120 58-198 (343)
16 cd08237 ribitol-5-phosphate_DH 99.8 9.1E-21 2E-25 139.7 10.7 101 18-120 57-193 (341)
17 KOG0024|consensus 99.8 4E-21 8.6E-26 138.8 7.7 100 18-120 60-198 (354)
18 cd08292 ETR_like_2 2-enoyl thi 99.8 2.9E-20 6.4E-25 134.8 11.8 101 19-120 58-168 (324)
19 cd08294 leukotriene_B4_DH_like 99.8 5.1E-20 1.1E-24 133.9 13.0 100 18-120 58-172 (329)
20 cd08300 alcohol_DH_class_III c 99.8 2.6E-20 5.6E-25 138.3 11.7 102 18-120 55-215 (368)
21 PLN03154 putative allyl alcoho 99.8 4.7E-20 1E-24 136.3 13.0 99 19-120 72-187 (348)
22 cd08295 double_bond_reductase_ 99.8 1.6E-20 3.4E-25 137.8 10.1 99 19-120 67-180 (338)
23 KOG1198|consensus 99.8 1.6E-20 3.5E-25 138.9 10.1 103 18-120 64-187 (347)
24 TIGR02817 adh_fam_1 zinc-bindi 99.8 3.1E-20 6.7E-25 135.5 11.4 103 19-121 58-179 (336)
25 cd08277 liver_alcohol_DH_like 99.8 4.9E-20 1.1E-24 136.7 12.3 102 18-120 54-213 (365)
26 PLN02827 Alcohol dehydrogenase 99.8 3.5E-20 7.6E-25 138.4 11.3 102 18-120 62-222 (378)
27 PLN02178 cinnamyl-alcohol dehy 99.8 3.7E-20 7.9E-25 138.3 10.8 102 18-120 59-206 (375)
28 TIGR03451 mycoS_dep_FDH mycoth 99.8 5.2E-20 1.1E-24 136.2 10.6 102 18-120 53-205 (358)
29 TIGR03366 HpnZ_proposed putati 99.8 1.1E-19 2.3E-24 130.6 11.8 76 43-120 72-149 (280)
30 PLN02514 cinnamyl-alcohol dehy 99.8 1.3E-19 2.8E-24 134.3 11.9 101 19-120 63-208 (357)
31 cd08274 MDR9 Medium chain dehy 99.8 2.2E-19 4.8E-24 131.7 12.5 103 17-120 75-206 (350)
32 cd08290 ETR 2-enoyl thioester 99.8 1.1E-19 2.3E-24 133.0 10.5 102 19-120 63-175 (341)
33 cd08243 quinone_oxidoreductase 99.8 2E-19 4.3E-24 129.7 11.8 102 19-120 56-171 (320)
34 PTZ00354 alcohol dehydrogenase 99.8 4.1E-19 8.8E-24 129.0 12.2 101 20-120 59-169 (334)
35 cd08270 MDR4 Medium chain dehy 99.8 3E-19 6.4E-24 128.6 11.0 101 19-120 51-161 (305)
36 KOG1202|consensus 99.8 1.5E-20 3.1E-25 152.2 4.5 121 1-121 1462-1582(2376)
37 cd08289 MDR_yhfp_like Yhfp put 99.8 6.2E-19 1.3E-23 128.1 11.9 102 19-120 57-175 (326)
38 TIGR01202 bchC 2-desacetyl-2-h 99.8 3.4E-19 7.4E-24 129.7 10.3 98 18-120 57-172 (308)
39 cd08299 alcohol_DH_class_I_II_ 99.8 6.9E-19 1.5E-23 131.1 11.6 102 18-120 59-219 (373)
40 TIGR03201 dearomat_had 6-hydro 99.8 6.2E-19 1.4E-23 130.1 11.1 101 18-120 52-194 (349)
41 cd08246 crotonyl_coA_red croto 99.8 9.8E-19 2.1E-23 130.7 12.0 100 21-120 83-222 (393)
42 COG1062 AdhC Zn-dependent alco 99.8 1.6E-19 3.5E-24 131.3 7.4 116 4-120 37-214 (366)
43 cd05188 MDR Medium chain reduc 99.8 1.6E-18 3.6E-23 122.0 12.4 102 18-120 28-162 (271)
44 cd05280 MDR_yhdh_yhfp Yhdh and 99.8 2.2E-18 4.7E-23 124.9 13.0 102 19-120 57-175 (325)
45 cd08296 CAD_like Cinnamyl alco 99.8 1.4E-18 3.1E-23 127.2 12.0 101 18-120 53-191 (333)
46 cd08244 MDR_enoyl_red Possible 99.8 2.3E-18 5E-23 124.7 12.6 102 18-120 58-171 (324)
47 cd08291 ETR_like_1 2-enoyl thi 99.8 1.3E-18 2.8E-23 127.0 11.2 101 18-120 59-172 (324)
48 cd05282 ETR_like 2-enoyl thioe 99.8 1.9E-18 4.1E-23 125.2 11.8 102 19-120 56-167 (323)
49 cd08231 MDR_TM0436_like Hypoth 99.8 2.7E-18 5.9E-23 126.8 12.7 102 18-120 53-206 (361)
50 cd05284 arabinose_DH_like D-ar 99.8 1.7E-18 3.7E-23 126.6 11.4 102 18-120 56-196 (340)
51 cd08248 RTN4I1 Human Reticulon 99.8 2.3E-18 5E-23 126.3 12.0 103 18-120 72-191 (350)
52 cd08273 MDR8 Medium chain dehy 99.8 3.1E-18 6.7E-23 124.5 12.5 102 19-120 57-168 (331)
53 TIGR02823 oxido_YhdH putative 99.8 3.6E-18 7.8E-23 124.0 12.5 103 18-120 55-174 (323)
54 TIGR02819 fdhA_non_GSH formald 99.8 2E-18 4.3E-23 129.7 11.4 101 18-120 60-213 (393)
55 KOG0022|consensus 99.8 1E-18 2.2E-23 126.1 9.1 102 18-120 60-221 (375)
56 cd08264 Zn_ADH_like2 Alcohol d 99.8 2.4E-18 5.3E-23 125.1 11.3 101 19-120 54-191 (325)
57 cd05279 Zn_ADH1 Liver alcohol 99.8 3.8E-18 8.1E-23 126.7 12.2 100 18-118 52-209 (365)
58 cd08251 polyketide_synthase po 99.8 4.5E-18 9.7E-23 121.5 12.1 102 18-120 36-149 (303)
59 cd08259 Zn_ADH5 Alcohol dehydr 99.8 4.9E-18 1.1E-22 123.3 12.4 101 19-120 54-191 (332)
60 cd08233 butanediol_DH_like (2R 99.8 3.8E-18 8.3E-23 125.7 12.0 99 19-120 64-201 (351)
61 PRK10309 galactitol-1-phosphat 99.8 3.3E-18 7.1E-23 125.9 11.3 98 18-118 52-186 (347)
62 cd05195 enoyl_red enoyl reduct 99.8 6E-18 1.3E-22 119.6 12.2 101 19-120 27-137 (293)
63 smart00829 PKS_ER Enoylreducta 99.8 6.5E-18 1.4E-22 119.5 12.3 100 20-120 24-133 (288)
64 cd05276 p53_inducible_oxidored 99.8 4.3E-18 9.4E-23 122.1 11.4 102 19-120 57-168 (323)
65 PRK10754 quinone oxidoreductas 99.8 5E-18 1.1E-22 123.6 11.6 102 19-120 57-169 (327)
66 cd08278 benzyl_alcohol_DH Benz 99.8 6.6E-18 1.4E-22 125.3 12.4 102 18-120 54-215 (365)
67 cd08249 enoyl_reductase_like e 99.8 4.1E-18 8.9E-23 125.1 11.1 102 19-120 54-183 (339)
68 cd08255 2-desacetyl-2-hydroxye 99.8 1E-17 2.2E-22 119.5 12.0 97 18-120 19-126 (277)
69 cd08260 Zn_ADH6 Alcohol dehydr 99.8 9.5E-18 2.1E-22 123.1 12.2 101 19-120 54-193 (345)
70 PRK13771 putative alcohol dehy 99.8 9.5E-18 2.1E-22 122.4 11.8 102 18-120 53-191 (334)
71 cd08230 glucose_DH Glucose deh 99.8 5.4E-18 1.2E-22 125.3 10.6 99 19-120 57-200 (355)
72 cd08253 zeta_crystallin Zeta-c 99.8 1.4E-17 2.9E-22 119.8 12.4 103 18-120 56-173 (325)
73 cd08250 Mgc45594_like Mgc45594 99.8 9.4E-18 2E-22 122.1 11.6 100 18-120 59-168 (329)
74 TIGR01751 crot-CoA-red crotony 99.8 9.8E-18 2.1E-22 125.8 11.9 99 22-120 80-218 (398)
75 cd08252 AL_MDR Arginate lyase 99.8 1.3E-17 2.8E-22 121.6 12.3 102 19-120 59-179 (336)
76 PRK09422 ethanol-active dehydr 99.8 6.5E-18 1.4E-22 123.5 10.6 100 19-120 53-191 (338)
77 cd08288 MDR_yhdh Yhdh putative 99.8 1.5E-17 3.2E-22 120.7 12.4 102 19-120 57-175 (324)
78 TIGR02824 quinone_pig3 putativ 99.8 1.3E-17 2.7E-22 120.1 11.9 102 19-120 57-168 (325)
79 cd08285 NADP_ADH NADP(H)-depen 99.8 1.4E-17 3.1E-22 122.6 12.0 101 18-120 52-195 (351)
80 PRK10083 putative oxidoreducta 99.8 1.5E-17 3.2E-22 121.8 11.9 97 19-118 53-187 (339)
81 cd08267 MDR1 Medium chain dehy 99.8 2.8E-17 6E-22 118.5 13.1 102 19-120 58-172 (319)
82 cd08261 Zn_ADH7 Alcohol dehydr 99.8 2.4E-17 5.2E-22 120.7 12.6 98 19-120 53-187 (337)
83 cd05278 FDH_like Formaldehyde 99.8 1.3E-17 2.8E-22 122.2 11.1 101 18-120 53-196 (347)
84 cd08254 hydroxyacyl_CoA_DH 6-h 99.8 1.9E-17 4.1E-22 120.6 11.9 101 19-120 56-193 (338)
85 cd08283 FDH_like_1 Glutathione 99.8 1.9E-17 4.2E-22 123.8 12.0 100 19-120 54-213 (386)
86 cd08297 CAD3 Cinnamyl alcohol 99.7 2.7E-17 5.7E-22 120.5 12.4 101 19-120 56-194 (341)
87 cd08262 Zn_ADH8 Alcohol dehydr 99.7 1.9E-17 4E-22 121.3 11.6 98 19-119 63-188 (341)
88 cd08298 CAD2 Cinnamyl alcohol 99.7 2.8E-17 6.1E-22 119.7 12.5 100 19-120 58-195 (329)
89 cd05286 QOR2 Quinone oxidoredu 99.7 2.9E-17 6.3E-22 117.7 12.2 102 19-120 54-165 (320)
90 cd08236 sugar_DH NAD(P)-depend 99.7 1.9E-17 4.2E-22 121.3 11.2 99 19-120 52-188 (343)
91 cd08247 AST1_like AST1 is a cy 99.7 4.7E-17 1E-21 119.8 13.2 97 20-116 59-176 (352)
92 cd08284 FDH_like_2 Glutathione 99.7 3.8E-17 8.2E-22 119.7 12.6 100 19-120 53-196 (344)
93 cd08238 sorbose_phosphate_red 99.7 1.5E-17 3.3E-22 125.3 10.7 103 18-120 61-207 (410)
94 cd08279 Zn_ADH_class_III Class 99.7 2.6E-17 5.6E-22 122.0 11.8 102 18-120 52-211 (363)
95 cd08235 iditol_2_DH_like L-idi 99.7 4.6E-17 1E-21 119.2 12.9 99 19-120 53-194 (343)
96 cd08258 Zn_ADH4 Alcohol dehydr 99.7 3.9E-17 8.5E-22 118.6 12.2 100 19-120 55-192 (306)
97 cd08263 Zn_ADH10 Alcohol dehyd 99.7 3.6E-17 7.8E-22 121.3 11.7 77 43-120 139-216 (367)
98 cd08286 FDH_like_ADH2 formalde 99.7 6.1E-17 1.3E-21 118.8 12.3 101 19-120 54-195 (345)
99 cd08272 MDR6 Medium chain dehy 99.7 6E-17 1.3E-21 116.8 12.0 102 19-120 57-173 (326)
100 cd08240 6_hydroxyhexanoate_dh_ 99.7 3.3E-17 7.1E-22 120.6 10.8 102 18-120 65-204 (350)
101 cd05283 CAD1 Cinnamyl alcohol 99.7 7.9E-17 1.7E-21 118.2 12.5 101 18-120 52-197 (337)
102 cd08268 MDR2 Medium chain dehy 99.7 1.1E-16 2.3E-21 115.4 12.8 102 19-120 57-173 (328)
103 cd08265 Zn_ADH3 Alcohol dehydr 99.7 6.8E-17 1.5E-21 120.7 12.1 101 18-120 86-232 (384)
104 cd08245 CAD Cinnamyl alcohol d 99.7 5E-17 1.1E-21 118.4 10.8 100 19-120 53-190 (330)
105 cd08266 Zn_ADH_like1 Alcohol d 99.7 1.1E-16 2.4E-21 116.1 12.3 102 19-120 57-195 (342)
106 cd05285 sorbitol_DH Sorbitol d 99.7 7.4E-17 1.6E-21 118.5 11.5 99 19-120 54-191 (343)
107 cd08282 PFDH_like Pseudomonas 99.7 9.1E-17 2E-21 119.7 12.1 100 19-120 53-205 (375)
108 cd05288 PGDH Prostaglandin deh 99.7 1.2E-16 2.5E-21 116.2 12.3 98 20-120 65-174 (329)
109 cd08271 MDR5 Medium chain dehy 99.7 1.3E-16 2.7E-21 115.3 12.2 101 20-120 57-170 (325)
110 cd08232 idonate-5-DH L-idonate 99.7 1.3E-16 2.7E-21 116.8 11.9 99 19-120 53-194 (339)
111 cd08275 MDR3 Medium chain dehy 99.7 3.2E-16 6.8E-21 113.7 12.7 100 19-118 56-166 (337)
112 cd08276 MDR7 Medium chain dehy 99.7 2.5E-16 5.5E-21 114.3 12.1 101 19-120 57-188 (336)
113 cd05289 MDR_like_2 alcohol deh 99.7 2.6E-16 5.6E-21 112.6 11.5 102 19-120 59-173 (309)
114 cd08242 MDR_like Medium chain 99.7 2.6E-16 5.6E-21 114.3 11.6 99 19-120 50-183 (319)
115 cd08234 threonine_DH_like L-th 99.7 2.6E-16 5.5E-21 114.8 11.5 99 19-120 52-188 (334)
116 cd08256 Zn_ADH2 Alcohol dehydr 99.7 5.1E-16 1.1E-20 114.3 12.7 99 18-119 61-201 (350)
117 cd08241 QOR1 Quinone oxidoredu 99.7 5.2E-16 1.1E-20 111.5 12.1 102 19-120 57-168 (323)
118 COG1063 Tdh Threonine dehydrog 99.7 5.3E-16 1.1E-20 115.1 11.6 97 22-120 58-197 (350)
119 cd08269 Zn_ADH9 Alcohol dehydr 99.7 7.7E-16 1.7E-20 111.0 11.7 97 19-120 51-158 (312)
120 COG2130 Putative NADP-dependen 99.7 5.8E-16 1.3E-20 111.4 9.3 100 18-120 66-179 (340)
121 TIGR00692 tdh L-threonine 3-de 99.7 1.3E-15 2.8E-20 111.8 11.3 98 19-120 55-190 (340)
122 PLN02702 L-idonate 5-dehydroge 99.7 1.7E-15 3.7E-20 112.2 11.3 97 19-118 73-207 (364)
123 cd08287 FDH_like_ADH3 formalde 99.6 4.6E-15 9.9E-20 108.8 11.8 98 19-118 53-194 (345)
124 cd05281 TDH Threonine dehydrog 99.6 8.6E-15 1.9E-19 107.5 11.8 98 19-120 57-192 (341)
125 PRK05396 tdh L-threonine 3-deh 99.6 1.2E-14 2.5E-19 106.7 11.6 99 18-120 56-192 (341)
126 KOG1196|consensus 99.5 1.7E-13 3.6E-18 98.6 11.9 92 26-120 78-182 (343)
127 PF08240 ADH_N: Alcohol dehydr 98.6 5.3E-08 1.2E-12 60.8 4.6 44 17-60 29-109 (109)
128 PRK09424 pntA NAD(P) transhydr 96.9 0.0019 4.1E-08 50.7 4.7 32 89-121 162-193 (509)
129 cd00401 AdoHcyase S-adenosyl-L 96.7 0.0042 9.1E-08 47.6 5.8 44 77-121 186-230 (413)
130 PRK05476 S-adenosyl-L-homocyst 96.7 0.007 1.5E-07 46.5 6.7 45 76-121 195-240 (425)
131 PRK08324 short chain dehydroge 96.5 0.0038 8.2E-08 50.5 4.1 64 44-120 385-450 (681)
132 TIGR00936 ahcY adenosylhomocys 96.1 0.016 3.5E-07 44.3 5.8 44 77-121 179-223 (406)
133 PRK08261 fabG 3-ketoacyl-(acyl 96.0 0.0067 1.4E-07 46.5 3.3 37 85-121 27-67 (450)
134 PRK12771 putative glutamate sy 95.8 0.019 4.2E-07 45.4 4.9 33 88-121 133-165 (564)
135 PRK08306 dipicolinate synthase 95.5 0.094 2E-06 38.4 7.3 30 91-121 151-180 (296)
136 PRK07831 short chain dehydroge 95.5 0.027 5.9E-07 39.7 4.4 32 89-120 14-46 (262)
137 PLN02494 adenosylhomocysteinas 95.5 0.043 9.2E-07 42.8 5.6 42 79-121 240-282 (477)
138 PRK12367 short chain dehydroge 95.4 0.029 6.4E-07 39.7 4.4 30 91-120 13-42 (245)
139 PLN03209 translocon at the inn 95.3 0.03 6.4E-07 44.7 4.5 39 82-120 70-108 (576)
140 PRK06935 2-deoxy-D-gluconate 3 95.3 0.034 7.4E-07 39.1 4.4 30 91-120 14-43 (258)
141 PRK05866 short chain dehydroge 95.2 0.038 8.2E-07 40.1 4.4 30 91-120 39-68 (293)
142 PTZ00075 Adenosylhomocysteinas 95.2 0.17 3.6E-06 39.6 8.0 63 57-121 218-282 (476)
143 cd01078 NAD_bind_H4MPT_DH NADP 95.2 0.046 9.9E-07 37.3 4.6 30 91-120 27-56 (194)
144 PRK06841 short chain dehydroge 95.1 0.04 8.8E-07 38.5 4.4 30 91-120 14-43 (255)
145 PF02826 2-Hacid_dh_C: D-isome 94.9 0.051 1.1E-06 36.7 4.3 31 90-121 34-64 (178)
146 PRK06128 oxidoreductase; Provi 94.9 0.044 9.6E-07 39.7 4.2 30 91-120 54-83 (300)
147 PRK08213 gluconate 5-dehydroge 94.9 0.051 1.1E-06 38.2 4.4 30 91-120 11-40 (259)
148 PLN02780 ketoreductase/ oxidor 94.9 0.042 9.1E-07 40.5 4.0 30 91-120 52-81 (320)
149 TIGR00561 pntA NAD(P) transhyd 94.9 0.046 1E-06 43.0 4.3 31 90-121 162-192 (511)
150 PRK15181 Vi polysaccharide bio 94.8 0.057 1.2E-06 40.0 4.7 42 78-120 2-43 (348)
151 PRK05854 short chain dehydroge 94.8 0.053 1.1E-06 39.7 4.4 30 91-120 13-42 (313)
152 PRK06197 short chain dehydroge 94.8 0.048 1E-06 39.6 4.1 30 91-120 15-44 (306)
153 PLN02253 xanthoxin dehydrogena 94.8 0.055 1.2E-06 38.5 4.4 30 91-120 17-46 (280)
154 PRK06196 oxidoreductase; Provi 94.8 0.054 1.2E-06 39.5 4.4 30 91-120 25-54 (315)
155 PRK08945 putative oxoacyl-(acy 94.8 0.057 1.2E-06 37.7 4.3 33 88-120 8-40 (247)
156 PRK07985 oxidoreductase; Provi 94.7 0.057 1.2E-06 39.1 4.2 30 91-120 48-77 (294)
157 cd05213 NAD_bind_Glutamyl_tRNA 94.6 0.01 2.2E-07 43.7 0.2 64 55-120 139-206 (311)
158 PRK07424 bifunctional sterol d 94.4 0.073 1.6E-06 40.8 4.4 30 91-120 177-206 (406)
159 TIGR02632 RhaD_aldol-ADH rhamn 94.4 0.099 2.1E-06 42.5 5.4 64 46-120 379-442 (676)
160 PRK08261 fabG 3-ketoacyl-(acyl 94.3 0.085 1.8E-06 40.4 4.7 30 91-120 209-238 (450)
161 PRK00517 prmA ribosomal protei 94.0 0.15 3.2E-06 36.3 5.1 78 32-120 68-146 (250)
162 KOG1201|consensus 94.0 0.093 2E-06 38.5 4.1 30 91-120 37-66 (300)
163 PLN00141 Tic62-NAD(P)-related 94.0 0.1 2.2E-06 36.7 4.3 30 91-120 16-45 (251)
164 PRK07792 fabG 3-ketoacyl-(acyl 94.0 0.11 2.3E-06 37.9 4.4 30 91-120 11-40 (306)
165 PLN02572 UDP-sulfoquinovose sy 94.0 0.093 2E-06 40.5 4.3 31 90-120 45-75 (442)
166 PRK06701 short chain dehydroge 93.8 0.12 2.6E-06 37.3 4.4 30 91-120 45-74 (290)
167 PLN02686 cinnamoyl-CoA reducta 93.8 0.12 2.5E-06 38.8 4.4 32 89-120 50-81 (367)
168 PLN02206 UDP-glucuronate decar 93.7 0.12 2.5E-06 40.0 4.3 30 91-120 118-147 (442)
169 PF01262 AlaDh_PNT_C: Alanine 93.6 0.12 2.7E-06 34.5 3.9 27 93-120 21-47 (168)
170 PF00670 AdoHcyase_NAD: S-aden 93.6 0.32 6.9E-06 32.7 5.7 43 78-121 8-51 (162)
171 PF10686 DUF2493: Protein of u 93.6 0.21 4.5E-06 28.9 4.3 30 91-120 31-61 (71)
172 PRK06720 hypothetical protein; 93.4 0.17 3.7E-06 34.0 4.4 30 91-120 15-44 (169)
173 KOG1205|consensus 93.4 0.15 3.2E-06 37.3 4.2 29 91-119 11-39 (282)
174 COG0334 GdhA Glutamate dehydro 93.1 0.31 6.8E-06 37.3 5.7 54 65-121 181-235 (411)
175 PLN02657 3,8-divinyl protochlo 93.1 0.2 4.4E-06 37.9 4.8 34 87-120 55-88 (390)
176 PRK06484 short chain dehydroge 93.1 0.18 3.8E-06 39.3 4.6 30 91-120 268-297 (520)
177 PLN02166 dTDP-glucose 4,6-dehy 92.7 0.22 4.7E-06 38.4 4.5 31 90-120 118-148 (436)
178 cd01080 NAD_bind_m-THF_DH_Cycl 92.6 0.7 1.5E-05 31.2 6.3 49 71-120 23-72 (168)
179 TIGR00518 alaDH alanine dehydr 92.6 0.21 4.5E-06 37.8 4.2 28 92-120 167-194 (370)
180 TIGR02853 spore_dpaA dipicolin 92.4 0.46 9.9E-06 34.7 5.7 29 91-120 150-178 (287)
181 PF12242 Eno-Rase_NADH_b: NAD( 92.4 0.56 1.2E-05 27.6 4.9 33 87-119 34-67 (78)
182 PLN02695 GDP-D-mannose-3',5'-e 92.2 0.29 6.2E-06 36.8 4.5 31 90-120 19-49 (370)
183 PRK14175 bifunctional 5,10-met 92.1 0.72 1.6E-05 33.8 6.3 48 72-120 138-186 (286)
184 PTZ00079 NADP-specific glutama 92.0 0.68 1.5E-05 36.1 6.4 30 90-120 235-264 (454)
185 cd05313 NAD_bind_2_Glu_DH NAD( 91.9 0.83 1.8E-05 32.9 6.3 30 90-120 36-65 (254)
186 PRK00045 hemA glutamyl-tRNA re 91.8 0.24 5.3E-06 38.0 3.8 45 75-120 162-210 (423)
187 PRK14031 glutamate dehydrogena 91.7 0.77 1.7E-05 35.7 6.3 31 90-121 226-256 (444)
188 PRK14030 glutamate dehydrogena 91.6 0.78 1.7E-05 35.7 6.3 31 90-121 226-256 (445)
189 PRK07201 short chain dehydroge 91.5 0.33 7.1E-06 38.9 4.4 29 92-120 371-399 (657)
190 cd01075 NAD_bind_Leu_Phe_Val_D 91.2 1.2 2.6E-05 30.7 6.5 31 90-121 26-56 (200)
191 PRK08410 2-hydroxyacid dehydro 91.1 0.4 8.7E-06 35.4 4.2 30 91-121 144-173 (311)
192 PRK05855 short chain dehydroge 91.0 0.41 8.8E-06 37.4 4.4 30 91-120 314-343 (582)
193 cd05211 NAD_bind_Glu_Leu_Phe_V 90.9 1.2 2.6E-05 31.2 6.3 30 90-120 21-50 (217)
194 PRK06932 glycerate dehydrogena 90.9 0.39 8.4E-06 35.5 4.0 29 91-120 146-174 (314)
195 PLN02928 oxidoreductase family 90.8 0.43 9.4E-06 35.8 4.2 30 91-121 158-187 (347)
196 PF02353 CMAS: Mycolic acid cy 90.6 0.38 8.1E-06 34.9 3.6 39 80-120 51-89 (273)
197 PRK06487 glycerate dehydrogena 90.4 0.48 1E-05 35.1 4.1 29 91-120 147-175 (317)
198 cd05212 NAD_bind_m-THF_DH_Cycl 90.4 2.1 4.5E-05 28.0 6.6 48 72-120 8-56 (140)
199 PRK13656 trans-2-enoyl-CoA red 90.3 0.68 1.5E-05 35.5 4.9 33 87-120 35-70 (398)
200 PRK14192 bifunctional 5,10-met 90.2 1.4 3E-05 32.3 6.3 31 90-120 157-187 (283)
201 PRK05579 bifunctional phosphop 90.2 0.52 1.1E-05 36.1 4.3 30 91-120 187-232 (399)
202 PF02882 THF_DHG_CYH_C: Tetrah 90.2 1.6 3.5E-05 29.2 6.1 50 71-120 15-64 (160)
203 PLN02477 glutamate dehydrogena 90.0 1.3 2.9E-05 34.1 6.3 30 90-120 204-233 (410)
204 KOG1200|consensus 89.9 0.58 1.3E-05 32.9 3.8 29 93-121 15-43 (256)
205 PRK11705 cyclopropane fatty ac 89.9 0.66 1.4E-05 35.3 4.5 47 72-120 148-194 (383)
206 PRK12548 shikimate 5-dehydroge 89.8 0.98 2.1E-05 32.9 5.3 29 91-120 125-154 (289)
207 PLN02427 UDP-apiose/xylose syn 89.8 0.59 1.3E-05 35.1 4.2 32 89-120 11-43 (386)
208 KOG1208|consensus 89.7 0.69 1.5E-05 34.3 4.4 30 91-120 34-63 (314)
209 TIGR02964 xanthine_xdhC xanthi 89.6 0.72 1.6E-05 33.0 4.3 33 88-121 96-128 (246)
210 PF13580 SIS_2: SIS domain; PD 89.5 1.1 2.4E-05 28.9 4.8 37 85-121 97-135 (138)
211 PRK11873 arsM arsenite S-adeno 89.5 0.55 1.2E-05 33.6 3.7 33 86-120 72-106 (272)
212 PF13241 NAD_binding_7: Putati 89.2 0.39 8.5E-06 29.4 2.5 29 91-120 6-34 (103)
213 TIGR01035 hemA glutamyl-tRNA r 89.1 1.6 3.5E-05 33.5 6.2 32 88-120 176-208 (417)
214 PRK09414 glutamate dehydrogena 89.1 1.7 3.8E-05 33.8 6.3 31 90-121 230-260 (445)
215 PRK08125 bifunctional UDP-gluc 88.9 0.67 1.5E-05 37.6 4.2 31 90-120 313-344 (660)
216 PRK00258 aroE shikimate 5-dehy 88.9 2 4.3E-05 31.1 6.2 30 90-120 121-151 (278)
217 TIGR00507 aroE shikimate 5-deh 88.8 2 4.3E-05 30.9 6.2 32 88-120 113-144 (270)
218 PRK12549 shikimate 5-dehydroge 88.7 1.5 3.3E-05 31.9 5.6 29 91-120 126-155 (284)
219 PRK14191 bifunctional 5,10-met 88.7 2.2 4.7E-05 31.4 6.3 48 72-120 137-185 (285)
220 COG2230 Cfa Cyclopropane fatty 88.3 2.5 5.4E-05 31.0 6.4 40 79-120 60-99 (283)
221 PRK06436 glycerate dehydrogena 88.2 0.96 2.1E-05 33.3 4.3 29 91-120 121-149 (303)
222 COG0111 SerA Phosphoglycerate 87.9 0.96 2.1E-05 33.7 4.2 29 92-121 142-170 (324)
223 PRK14189 bifunctional 5,10-met 87.9 2.1 4.5E-05 31.5 5.7 48 72-120 138-186 (285)
224 PRK12769 putative oxidoreducta 87.7 0.97 2.1E-05 36.6 4.4 30 90-120 325-354 (654)
225 KOG1252|consensus 87.5 1.9 4.1E-05 32.5 5.4 37 85-121 96-132 (362)
226 cd01076 NAD_bind_1_Glu_DH NAD( 87.5 3.4 7.3E-05 29.2 6.5 29 91-120 30-58 (227)
227 TIGR01318 gltD_gamma_fam gluta 87.5 1.1 2.3E-05 34.9 4.4 29 91-120 140-168 (467)
228 PRK13243 glyoxylate reductase; 87.3 1.1 2.5E-05 33.3 4.3 29 91-120 149-177 (333)
229 PRK12550 shikimate 5-dehydroge 86.9 2.2 4.7E-05 31.0 5.5 32 88-120 118-150 (272)
230 PF00208 ELFV_dehydrog: Glutam 86.8 1.1 2.4E-05 32.0 3.8 30 90-120 30-59 (244)
231 COG0169 AroE Shikimate 5-dehyd 86.7 2.4 5.1E-05 31.1 5.5 31 89-120 123-154 (283)
232 PRK11790 D-3-phosphoglycerate 86.5 1.3 2.9E-05 34.0 4.3 29 91-120 150-178 (409)
233 PRK15438 erythronate-4-phospha 86.2 1.4 3.1E-05 33.6 4.3 30 90-120 114-143 (378)
234 KOG1210|consensus 85.6 3.2 6.8E-05 31.0 5.7 34 87-120 28-61 (331)
235 PRK14027 quinate/shikimate deh 85.5 2.9 6.2E-05 30.5 5.5 29 90-119 125-154 (283)
236 KOG2862|consensus 85.5 1.3 2.8E-05 33.2 3.6 30 89-119 89-118 (385)
237 PRK15469 ghrA bifunctional gly 85.5 1.7 3.6E-05 32.2 4.3 29 91-120 135-163 (312)
238 PRK10792 bifunctional 5,10-met 85.3 3.4 7.4E-05 30.3 5.7 48 72-120 139-187 (285)
239 PRK12809 putative oxidoreducta 85.2 1.5 3.2E-05 35.5 4.2 29 91-120 309-337 (639)
240 PRK14188 bifunctional 5,10-met 85.0 4.2 9.1E-05 30.0 6.1 48 72-120 138-186 (296)
241 PRK14176 bifunctional 5,10-met 84.9 3.9 8.5E-05 30.1 5.9 48 72-120 144-192 (287)
242 PF00070 Pyr_redox: Pyridine n 84.7 2.5 5.3E-05 24.3 4.0 26 94-120 1-26 (80)
243 cd01079 NAD_bind_m-THF_DH NAD 84.6 3.9 8.5E-05 28.4 5.5 49 71-120 32-90 (197)
244 TIGR00521 coaBC_dfp phosphopan 84.6 1.7 3.6E-05 33.3 4.1 31 90-120 183-229 (390)
245 PRK00257 erythronate-4-phospha 84.5 3.9 8.4E-05 31.2 6.0 31 90-121 114-144 (381)
246 PRK15409 bifunctional glyoxyla 84.4 1.7 3.7E-05 32.3 3.9 29 91-120 144-173 (323)
247 PRK14180 bifunctional 5,10-met 84.3 4.3 9.2E-05 29.8 5.9 49 72-120 138-186 (282)
248 cd05311 NAD_bind_2_malic_enz N 84.2 4.3 9.4E-05 28.5 5.8 28 90-118 23-50 (226)
249 TIGR01809 Shik-DH-AROM shikima 84.1 2 4.2E-05 31.3 4.1 29 91-120 124-153 (282)
250 PRK14172 bifunctional 5,10-met 84.0 4.5 9.7E-05 29.6 5.9 48 72-120 138-186 (278)
251 PRK01438 murD UDP-N-acetylmura 83.9 2.3 5E-05 33.0 4.7 29 91-120 15-43 (480)
252 PRK14190 bifunctional 5,10-met 83.8 4.5 9.7E-05 29.7 5.8 48 72-120 138-186 (284)
253 PLN02306 hydroxypyruvate reduc 83.5 2 4.3E-05 32.8 4.0 29 91-120 164-193 (386)
254 KOG1610|consensus 83.4 5.1 0.00011 29.9 6.0 31 91-121 28-58 (322)
255 cd05191 NAD_bind_amino_acid_DH 83.3 5.6 0.00012 23.3 5.2 29 90-119 21-50 (86)
256 PRK12749 quinate/shikimate deh 83.2 4.5 9.7E-05 29.6 5.7 28 91-119 123-151 (288)
257 PRK06719 precorrin-2 dehydroge 83.1 2.9 6.2E-05 27.7 4.3 29 91-120 12-40 (157)
258 PRK14177 bifunctional 5,10-met 83.1 5.2 0.00011 29.4 5.9 48 72-120 139-187 (284)
259 PRK07574 formate dehydrogenase 83.0 2.3 5E-05 32.5 4.2 29 91-120 191-219 (385)
260 COG1052 LdhA Lactate dehydroge 82.8 2.5 5.4E-05 31.6 4.2 29 91-120 145-173 (324)
261 PRK00141 murD UDP-N-acetylmura 82.5 2.2 4.8E-05 33.2 4.1 29 91-120 14-42 (473)
262 PRK14179 bifunctional 5,10-met 82.4 4.6 9.9E-05 29.7 5.4 49 72-121 138-187 (284)
263 PRK12480 D-lactate dehydrogena 82.3 2.7 5.9E-05 31.3 4.3 29 91-120 145-173 (330)
264 COG0503 Apt Adenine/guanine ph 82.2 3.7 8.1E-05 27.9 4.7 33 88-120 112-147 (179)
265 PRK14169 bifunctional 5,10-met 82.2 5.8 0.00013 29.1 5.9 48 72-120 136-184 (282)
266 PLN02520 bifunctional 3-dehydr 82.1 2.5 5.3E-05 33.6 4.2 29 91-120 378-406 (529)
267 KOG1203|consensus 82.1 2.8 6.2E-05 32.3 4.4 32 89-120 76-107 (411)
268 PRK14194 bifunctional 5,10-met 82.1 6.1 0.00013 29.3 6.0 48 72-120 139-187 (301)
269 PRK14173 bifunctional 5,10-met 81.8 6 0.00013 29.1 5.8 48 72-120 135-183 (287)
270 PRK14166 bifunctional 5,10-met 81.7 6.4 0.00014 28.9 5.9 48 72-120 137-185 (282)
271 PRK12831 putative oxidoreducta 81.5 3.1 6.7E-05 32.4 4.6 30 90-120 138-167 (464)
272 PRK14187 bifunctional 5,10-met 80.9 6.6 0.00014 29.0 5.8 48 72-120 140-188 (294)
273 PRK14183 bifunctional 5,10-met 80.7 7.4 0.00016 28.5 6.0 48 72-120 137-185 (281)
274 PLN02516 methylenetetrahydrofo 80.5 7 0.00015 28.9 5.8 48 72-120 147-195 (299)
275 PRK12810 gltD glutamate syntha 80.4 3.3 7.2E-05 32.2 4.4 30 90-120 141-170 (471)
276 PRK14170 bifunctional 5,10-met 80.4 7 0.00015 28.7 5.8 48 72-120 137-185 (284)
277 PRK13984 putative oxidoreducta 80.4 3.3 7.2E-05 33.2 4.5 31 89-120 280-310 (604)
278 PRK14186 bifunctional 5,10-met 80.1 7.7 0.00017 28.7 5.9 48 72-120 138-186 (297)
279 cd01065 NAD_bind_Shikimate_DH 80.1 8.5 0.00018 24.7 5.7 30 90-120 17-47 (155)
280 PRK14171 bifunctional 5,10-met 80.0 7.8 0.00017 28.5 5.9 48 72-120 139-187 (288)
281 COG0031 CysK Cysteine synthase 79.9 5.3 0.00012 29.6 5.0 35 85-120 55-89 (300)
282 COG1086 Predicted nucleoside-d 79.8 2.8 6.2E-05 33.6 3.8 27 91-117 249-275 (588)
283 PRK01710 murD UDP-N-acetylmura 79.6 3.2 6.9E-05 32.2 4.0 29 91-120 13-41 (458)
284 PRK12814 putative NADPH-depend 79.5 3.6 7.7E-05 33.5 4.4 30 90-120 191-220 (652)
285 PRK14982 acyl-ACP reductase; P 79.4 3.7 7.9E-05 30.9 4.1 30 90-119 153-184 (340)
286 PLN00016 RNA-binding protein; 79.4 2.2 4.9E-05 31.9 3.1 29 92-120 52-84 (378)
287 PLN03139 formate dehydrogenase 79.3 3.4 7.4E-05 31.6 4.0 29 91-120 198-226 (386)
288 PRK09310 aroDE bifunctional 3- 79.2 8.4 0.00018 30.3 6.2 29 91-120 331-359 (477)
289 KOG1429|consensus 78.8 5.2 0.00011 29.7 4.6 34 88-121 23-56 (350)
290 PLN02260 probable rhamnose bio 78.4 4 8.6E-05 33.1 4.4 29 91-119 379-407 (668)
291 PRK14182 bifunctional 5,10-met 78.3 9.4 0.0002 28.0 5.9 48 72-120 137-185 (282)
292 TIGR01317 GOGAT_sm_gam glutama 78.1 4.2 9.2E-05 31.8 4.3 30 90-120 141-170 (485)
293 PLN02565 cysteine synthase 78.0 10 0.00022 28.2 6.1 36 85-120 59-94 (322)
294 KOG1712|consensus 78.0 4.9 0.00011 27.2 4.0 36 85-120 115-153 (183)
295 PRK12779 putative bifunctional 77.7 3.9 8.5E-05 34.9 4.3 30 90-120 304-333 (944)
296 TIGR02356 adenyl_thiF thiazole 77.5 4.7 0.0001 27.8 4.0 26 91-117 20-45 (202)
297 PRK13940 glutamyl-tRNA reducta 77.5 10 0.00022 29.3 6.1 26 91-117 180-205 (414)
298 PRK08328 hypothetical protein; 76.9 4.5 9.8E-05 28.5 3.9 26 91-117 26-51 (231)
299 COG0075 Serine-pyruvate aminot 76.6 6.2 0.00013 30.2 4.7 31 89-120 77-107 (383)
300 COG4821 Uncharacterized protei 76.5 5.8 0.00012 27.9 4.1 38 84-121 97-136 (243)
301 PRK13403 ketol-acid reductoiso 76.2 4.7 0.0001 30.3 3.9 30 91-121 15-44 (335)
302 PRK13581 D-3-phosphoglycerate 76.1 4.9 0.00011 31.9 4.2 29 91-120 139-167 (526)
303 TIGR01327 PGDH D-3-phosphoglyc 76.0 5 0.00011 31.8 4.3 29 91-120 137-165 (525)
304 TIGR02355 moeB molybdopterin s 75.9 5 0.00011 28.5 3.9 25 92-117 24-48 (240)
305 TIGR02813 omega_3_PfaA polyket 75.9 5.4 0.00012 37.7 4.9 32 89-120 1994-2026(2582)
306 PRK14193 bifunctional 5,10-met 75.9 11 0.00024 27.7 5.7 48 72-120 138-188 (284)
307 COG0499 SAM1 S-adenosylhomocys 74.9 3.3 7.2E-05 31.6 2.8 32 89-121 206-237 (420)
308 COG2518 Pcm Protein-L-isoaspar 74.9 7 0.00015 27.4 4.3 33 85-120 66-98 (209)
309 PF05706 CDKN3: Cyclin-depende 74.4 8 0.00017 26.2 4.3 29 88-116 129-159 (168)
310 cd01134 V_A-ATPase_A V/A-type 74.3 9.4 0.0002 29.1 5.1 49 71-120 136-186 (369)
311 PRK06567 putative bifunctional 74.3 6.3 0.00014 34.0 4.5 30 90-120 381-410 (1028)
312 TIGR01316 gltA glutamate synth 74.2 5.8 0.00013 30.7 4.1 30 90-120 131-160 (449)
313 PRK12778 putative bifunctional 74.2 6.5 0.00014 32.5 4.6 30 90-120 429-458 (752)
314 PRK14181 bifunctional 5,10-met 74.0 14 0.0003 27.2 5.8 48 72-120 133-185 (287)
315 PRK14178 bifunctional 5,10-met 73.4 12 0.00027 27.4 5.4 48 72-120 132-180 (279)
316 PRK14168 bifunctional 5,10-met 73.1 13 0.00028 27.5 5.5 48 72-120 141-193 (297)
317 PLN02897 tetrahydrofolate dehy 73.0 13 0.00028 28.2 5.5 48 72-120 194-242 (345)
318 PLN02616 tetrahydrofolate dehy 72.9 13 0.00028 28.3 5.6 48 72-120 211-259 (364)
319 PRK08605 D-lactate dehydrogena 72.7 6.5 0.00014 29.3 4.0 29 91-120 145-174 (332)
320 PRK14167 bifunctional 5,10-met 72.7 15 0.00033 27.2 5.8 48 72-120 137-189 (297)
321 PRK12770 putative glutamate sy 72.6 8.2 0.00018 28.6 4.5 32 88-120 14-45 (352)
322 TIGR00406 prmA ribosomal prote 72.6 25 0.00055 25.5 7.0 29 89-120 157-186 (288)
323 PRK12831 putative oxidoreducta 72.4 7.5 0.00016 30.3 4.4 31 89-120 278-308 (464)
324 PRK04148 hypothetical protein; 72.3 7.1 0.00015 25.4 3.6 31 89-121 14-44 (134)
325 TIGR01042 V-ATPase_V1_A V-type 72.2 17 0.00036 29.6 6.3 52 68-120 202-255 (591)
326 PRK11199 tyrA bifunctional cho 72.0 25 0.00055 26.6 7.0 29 92-120 98-126 (374)
327 PRK14185 bifunctional 5,10-met 71.9 16 0.00034 27.1 5.7 48 72-120 137-189 (293)
328 PRK00377 cbiT cobalt-precorrin 71.8 13 0.00029 25.2 5.1 34 85-120 34-69 (198)
329 PRK09853 putative selenate red 71.2 6.8 0.00015 33.8 4.1 30 90-120 537-566 (1019)
330 TIGR01744 XPRTase xanthine pho 70.9 12 0.00026 25.7 4.7 32 89-120 114-148 (191)
331 PRK14184 bifunctional 5,10-met 70.5 16 0.00035 26.9 5.5 48 72-120 137-189 (286)
332 PRK04176 ribulose-1,5-biphosph 70.4 7.1 0.00015 27.9 3.6 26 94-120 27-52 (257)
333 PLN03013 cysteine synthase 70.3 17 0.00036 28.4 5.8 36 85-120 167-202 (429)
334 TIGR01316 gltA glutamate synth 70.3 9.1 0.0002 29.6 4.4 31 89-120 269-299 (449)
335 COG0281 SfcA Malic enzyme [Ene 70.2 16 0.00035 28.4 5.6 59 58-118 166-224 (432)
336 PRK09219 xanthine phosphoribos 70.1 12 0.00026 25.7 4.6 33 88-120 113-148 (189)
337 PRK06481 fumarate reductase fl 70.1 5.8 0.00013 31.2 3.4 27 94-121 63-89 (506)
338 KOG0029|consensus 70.0 7.2 0.00016 30.9 3.8 30 91-121 14-43 (501)
339 PRK07364 2-octaprenyl-6-methox 70.0 6.5 0.00014 29.6 3.5 27 93-120 19-45 (415)
340 PLN02927 antheraxanthin epoxid 69.8 7.3 0.00016 32.0 3.9 31 89-120 78-108 (668)
341 PRK05690 molybdopterin biosynt 69.5 9.9 0.00021 27.1 4.2 26 91-117 31-56 (245)
342 PRK11749 dihydropyrimidine deh 69.4 8.7 0.00019 29.7 4.1 30 90-120 138-167 (457)
343 KOG1014|consensus 69.3 9.1 0.0002 28.5 4.0 30 90-120 47-77 (312)
344 PRK07121 hypothetical protein; 68.7 7.4 0.00016 30.3 3.7 27 94-121 22-48 (492)
345 PRK15116 sulfur acceptor prote 68.3 9.6 0.00021 27.7 3.9 26 91-117 29-54 (268)
346 cd00757 ThiF_MoeB_HesA_family 67.9 10 0.00022 26.5 4.0 25 92-117 21-45 (228)
347 PRK08223 hypothetical protein; 67.8 8.9 0.00019 28.2 3.7 26 91-117 26-51 (287)
348 COG0190 FolD 5,10-methylene-te 67.7 19 0.0004 26.5 5.3 49 71-120 135-184 (283)
349 TIGR01138 cysM cysteine syntha 67.6 29 0.00062 25.3 6.3 35 85-120 52-86 (290)
350 PRK05600 thiamine biosynthesis 67.6 9.6 0.00021 28.9 4.0 26 91-117 40-65 (370)
351 PF13450 NAD_binding_8: NAD(P) 67.2 10 0.00022 21.3 3.2 23 97-120 1-23 (68)
352 TIGR00292 thiazole biosynthesi 67.1 8.7 0.00019 27.5 3.5 26 94-120 23-48 (254)
353 PTZ00188 adrenodoxin reductase 67.0 11 0.00025 29.9 4.4 30 90-120 37-67 (506)
354 PRK08644 thiamine biosynthesis 66.8 11 0.00024 26.3 3.9 26 91-117 27-52 (212)
355 PF01135 PCMT: Protein-L-isoas 66.7 8.5 0.00018 26.8 3.3 30 85-116 66-95 (209)
356 PRK12775 putative trifunctiona 66.6 9.8 0.00021 32.8 4.2 29 91-120 429-457 (1006)
357 TIGR02354 thiF_fam2 thiamine b 66.5 12 0.00025 25.9 3.9 25 92-117 21-45 (200)
358 KOG0069|consensus 66.5 37 0.00081 25.6 6.8 28 90-118 160-187 (336)
359 TIGR03315 Se_ygfK putative sel 66.5 9.9 0.00021 32.8 4.2 29 91-120 536-564 (1012)
360 PRK15317 alkyl hydroperoxide r 66.1 8.2 0.00018 30.4 3.5 27 93-120 212-238 (517)
361 PRK05562 precorrin-2 dehydroge 66.0 14 0.00031 26.1 4.3 29 91-120 24-52 (223)
362 PRK08762 molybdopterin biosynt 65.4 9.9 0.00021 28.8 3.7 26 91-117 134-159 (376)
363 PRK05597 molybdopterin biosynt 65.3 12 0.00026 28.2 4.0 26 91-117 27-52 (355)
364 PRK12475 thiamine/molybdopteri 65.2 12 0.00026 28.1 4.0 26 91-117 23-48 (338)
365 KOG2018|consensus 65.1 10 0.00022 28.7 3.5 26 91-117 73-98 (430)
366 PRK11761 cysM cysteine synthas 65.0 31 0.00068 25.2 6.1 35 85-120 56-90 (296)
367 PRK07688 thiamine/molybdopteri 64.6 12 0.00027 28.0 4.0 26 91-117 23-48 (339)
368 PRK06153 hypothetical protein; 64.4 9.9 0.00021 29.3 3.5 26 91-117 175-200 (393)
369 PF06325 PrmA: Ribosomal prote 63.9 13 0.00028 27.4 3.9 78 32-120 109-188 (295)
370 PRK09754 phenylpropionate diox 63.8 12 0.00027 28.2 4.0 31 89-120 141-171 (396)
371 PLN02556 cysteine synthase/L-3 63.8 28 0.00062 26.4 5.8 36 85-120 103-138 (368)
372 PRK08132 FAD-dependent oxidore 63.5 9.6 0.00021 30.1 3.4 27 93-120 24-50 (547)
373 PLN02852 ferredoxin-NADP+ redu 63.4 13 0.00028 29.4 4.1 30 90-120 24-55 (491)
374 PLN00093 geranylgeranyl diphos 63.0 11 0.00023 29.4 3.5 26 94-120 41-66 (450)
375 PRK07573 sdhA succinate dehydr 62.4 10 0.00022 30.9 3.4 26 94-120 37-62 (640)
376 PLN00106 malate dehydrogenase 62.2 15 0.00033 27.4 4.1 25 92-116 18-42 (323)
377 PRK07804 L-aspartate oxidase; 62.1 11 0.00024 29.9 3.6 26 95-121 19-44 (541)
378 TIGR02114 coaB_strep phosphopa 61.7 11 0.00024 26.5 3.2 23 98-120 21-43 (227)
379 PRK10717 cysteine synthase A; 61.4 39 0.00086 24.9 6.2 35 85-120 57-91 (330)
380 PRK00676 hemA glutamyl-tRNA re 61.2 37 0.00081 25.6 6.0 29 91-120 173-202 (338)
381 PTZ00139 Succinate dehydrogena 60.9 11 0.00024 30.5 3.4 26 95-121 32-57 (617)
382 PF08541 ACP_syn_III_C: 3-Oxoa 60.8 13 0.00029 21.7 3.0 24 77-100 54-77 (90)
383 PRK14174 bifunctional 5,10-met 60.6 36 0.00079 25.2 5.8 48 72-120 139-191 (295)
384 PLN02948 phosphoribosylaminoim 60.2 17 0.00038 29.3 4.4 30 91-121 21-50 (577)
385 COG1179 Dinucleotide-utilizing 59.6 15 0.00032 26.7 3.4 26 91-117 29-54 (263)
386 PRK07411 hypothetical protein; 59.3 15 0.00033 28.0 3.7 25 92-117 38-62 (390)
387 PLN02735 carbamoyl-phosphate s 59.1 8.6 0.00019 33.5 2.6 44 76-120 7-61 (1102)
388 PRK05479 ketol-acid reductoiso 58.8 18 0.00039 27.2 3.9 29 91-120 16-44 (330)
389 TIGR01139 cysK cysteine syntha 58.4 52 0.0011 23.9 6.3 35 85-120 50-84 (298)
390 PRK07878 molybdopterin biosynt 58.4 16 0.00035 27.9 3.7 26 91-117 41-66 (392)
391 PLN00203 glutamyl-tRNA reducta 58.1 17 0.00038 29.0 4.0 28 92-120 266-294 (519)
392 KOG1370|consensus 57.9 12 0.00026 28.3 2.8 30 91-121 213-242 (434)
393 TIGR01381 E1_like_apg7 E1-like 57.8 15 0.00032 30.3 3.5 27 91-118 337-363 (664)
394 PLN00128 Succinate dehydrogena 57.3 14 0.0003 30.2 3.4 26 95-121 53-78 (635)
395 PRK12779 putative bifunctional 57.3 21 0.00046 30.6 4.6 29 91-120 446-474 (944)
396 PRK13942 protein-L-isoaspartat 56.9 30 0.00066 23.8 4.7 34 85-120 70-105 (212)
397 PLN00011 cysteine synthase 56.5 52 0.0011 24.3 6.1 35 85-120 61-96 (323)
398 cd01485 E1-1_like Ubiquitin ac 56.5 20 0.00043 24.6 3.6 26 92-118 19-44 (198)
399 PF03853 YjeF_N: YjeF-related 56.4 46 0.00099 22.1 5.3 40 81-120 14-56 (169)
400 PRK13810 orotate phosphoribosy 56.0 39 0.00086 23.1 5.0 34 87-120 117-153 (187)
401 TIGR03140 AhpF alkyl hydropero 55.9 18 0.00039 28.5 3.7 28 92-120 212-239 (515)
402 PRK14967 putative methyltransf 55.8 36 0.00078 23.5 4.9 32 86-120 31-63 (223)
403 PLN02463 lycopene beta cyclase 55.6 18 0.00039 28.2 3.6 26 94-120 30-55 (447)
404 TIGR01137 cysta_beta cystathio 54.9 58 0.0012 25.1 6.3 35 85-120 55-89 (454)
405 PRK08317 hypothetical protein; 54.9 27 0.00058 23.7 4.2 34 85-120 13-48 (241)
406 TIGR01136 cysKM cysteine synth 54.7 62 0.0013 23.5 6.2 35 85-120 51-85 (299)
407 TIGR01043 ATP_syn_A_arch ATP s 54.6 70 0.0015 26.1 6.8 48 71-119 201-250 (578)
408 PRK13943 protein-L-isoaspartat 54.3 33 0.00071 25.6 4.7 30 85-116 74-103 (322)
409 TIGR02469 CbiT precorrin-6Y C5 54.1 34 0.00074 20.6 4.2 34 85-120 13-47 (124)
410 PLN02968 Probable N-acetyl-gam 53.8 26 0.00056 26.8 4.2 27 93-119 39-66 (381)
411 PLN02503 fatty acyl-CoA reduct 53.6 17 0.00036 29.6 3.3 27 88-114 115-141 (605)
412 PRK12778 putative bifunctional 53.1 22 0.00049 29.4 4.0 31 89-120 567-598 (752)
413 PRK11749 dihydropyrimidine deh 53.0 30 0.00065 26.7 4.5 32 88-120 269-301 (457)
414 COG1249 Lpd Pyruvate/2-oxoglut 52.3 24 0.00051 27.7 3.8 30 90-120 171-200 (454)
415 KOG2250|consensus 52.2 24 0.00052 28.0 3.8 31 90-121 249-279 (514)
416 PRK08294 phenol 2-monooxygenas 52.2 17 0.00037 29.6 3.1 27 93-120 33-60 (634)
417 PF10844 DUF2577: Protein of u 51.8 19 0.00041 22.0 2.7 21 32-53 78-98 (100)
418 cd01562 Thr-dehyd Threonine de 51.6 32 0.0007 24.8 4.3 28 92-120 65-92 (304)
419 PRK06732 phosphopantothenate-- 51.5 20 0.00044 25.2 3.1 22 99-120 23-44 (229)
420 PLN02256 arogenate dehydrogena 51.2 40 0.00087 24.8 4.7 35 85-120 29-63 (304)
421 PLN02696 1-deoxy-D-xylulose-5- 50.7 21 0.00045 28.1 3.3 23 93-115 58-80 (454)
422 PTZ00306 NADH-dependent fumara 50.7 20 0.00044 31.4 3.5 26 95-121 412-437 (1167)
423 PF01946 Thi4: Thi4 family; PD 50.1 21 0.00045 25.5 2.9 25 95-120 20-44 (230)
424 cd01492 Aos1_SUMO Ubiquitin ac 49.8 27 0.00058 24.0 3.5 27 91-118 20-46 (197)
425 cd06919 Asp_decarbox Aspartate 49.8 12 0.00026 23.6 1.5 23 19-41 56-88 (111)
426 PF13738 Pyr_redox_3: Pyridine 49.8 33 0.00072 22.8 3.9 29 90-119 165-193 (203)
427 PRK10886 DnaA initiator-associ 49.4 85 0.0018 21.6 6.2 36 86-121 104-141 (196)
428 PRK12810 gltD glutamate syntha 48.8 40 0.00086 26.2 4.6 30 89-119 278-308 (471)
429 cd00762 NAD_bind_malic_enz NAD 48.7 44 0.00095 24.2 4.4 36 80-116 13-48 (254)
430 cd01561 CBS_like CBS_like: Thi 48.3 96 0.0021 22.3 6.3 34 86-120 47-80 (291)
431 PRK07251 pyridine nucleotide-d 48.1 35 0.00075 26.1 4.2 29 91-120 156-184 (438)
432 PRK12770 putative glutamate sy 48.0 33 0.00071 25.4 3.9 29 91-120 171-200 (352)
433 PLN02409 serine--glyoxylate am 47.9 59 0.0013 24.6 5.3 32 88-120 80-111 (401)
434 PRK08558 adenine phosphoribosy 47.5 53 0.0011 23.4 4.7 32 89-120 173-207 (238)
435 PF04127 DFP: DNA / pantothena 46.9 45 0.00098 22.8 4.2 27 94-120 21-47 (185)
436 PRK09213 pur operon repressor; 46.9 52 0.0011 24.0 4.7 33 88-120 192-227 (271)
437 KOG2017|consensus 46.9 14 0.00031 28.2 1.8 26 91-117 65-90 (427)
438 COG0446 HcaD Uncharacterized N 46.9 35 0.00075 25.2 3.9 28 92-120 136-163 (415)
439 PRK05472 redox-sensing transcr 46.4 54 0.0012 22.6 4.6 36 84-120 76-113 (213)
440 TIGR00223 panD L-aspartate-alp 46.4 14 0.00031 23.7 1.5 25 18-42 56-90 (126)
441 PRK13748 putative mercuric red 46.1 30 0.00066 27.3 3.7 26 94-120 100-125 (561)
442 cd05312 NAD_bind_1_malic_enz N 46.1 75 0.0016 23.4 5.4 35 80-115 13-47 (279)
443 PRK08198 threonine dehydratase 46.0 53 0.0011 25.0 4.8 29 91-120 69-97 (404)
444 PTZ00058 glutathione reductase 45.6 42 0.00091 27.0 4.4 29 91-120 236-264 (561)
445 PF00291 PALP: Pyridoxal-phosp 45.5 33 0.00072 24.6 3.6 29 91-120 55-83 (306)
446 COG0794 GutQ Predicted sugar p 45.4 50 0.0011 23.1 4.2 37 85-121 80-118 (202)
447 PRK13800 putative oxidoreducta 45.3 30 0.00064 29.5 3.6 25 95-120 16-40 (897)
448 PTZ00367 squalene epoxidase; P 45.2 56 0.0012 26.4 5.0 27 93-120 34-60 (567)
449 PRK06115 dihydrolipoamide dehy 45.2 44 0.00094 26.0 4.3 30 90-120 172-201 (466)
450 PRK05449 aspartate alpha-decar 45.0 16 0.00034 23.6 1.5 23 19-41 57-89 (126)
451 PF03949 Malic_M: Malic enzyme 44.8 62 0.0013 23.5 4.7 37 78-115 11-47 (255)
452 PLN02697 lycopene epsilon cycl 44.6 31 0.00067 27.6 3.5 26 94-120 110-135 (529)
453 PRK12775 putative trifunctiona 44.5 40 0.00088 29.2 4.3 29 89-118 568-596 (1006)
454 PRK07048 serine/threonine dehy 44.4 50 0.0011 24.3 4.4 27 93-120 73-99 (321)
455 PLN02507 glutathione reductase 44.3 34 0.00074 26.9 3.6 25 95-120 28-52 (499)
456 COG0493 GltD NADPH-dependent g 44.2 42 0.0009 26.4 4.1 30 90-120 121-150 (457)
457 COG3007 Uncharacterized paraqu 44.2 15 0.00033 27.5 1.5 30 86-116 34-64 (398)
458 cd06447 D-Ser-dehyd D-Serine d 44.1 1.1E+02 0.0023 23.8 6.2 26 95-120 136-161 (404)
459 PRK07846 mycothione reductase; 43.9 43 0.00093 25.9 4.1 28 92-120 166-193 (451)
460 PF10727 Rossmann-like: Rossma 43.9 64 0.0014 20.6 4.3 40 79-120 84-123 (127)
461 TIGR01743 purR_Bsub pur operon 43.7 64 0.0014 23.5 4.7 33 88-120 190-225 (268)
462 COG0853 PanD Aspartate 1-decar 43.5 18 0.00039 23.2 1.6 24 19-42 56-89 (126)
463 PRK12814 putative NADPH-depend 43.5 83 0.0018 25.8 5.8 32 88-120 319-351 (652)
464 PRK12845 3-ketosteroid-delta-1 43.5 31 0.00067 27.7 3.4 24 95-120 19-42 (564)
465 PRK06110 hypothetical protein; 43.4 62 0.0013 23.9 4.7 26 95-120 72-97 (322)
466 PRK09496 trkA potassium transp 43.2 48 0.001 25.3 4.3 30 90-120 229-258 (453)
467 PRK04965 NADH:flavorubredoxin 43.2 43 0.00094 25.0 3.9 31 89-120 138-168 (377)
468 PLN02985 squalene monooxygenas 43.1 37 0.0008 26.9 3.7 26 94-120 45-70 (514)
469 cd05014 SIS_Kpsf KpsF-like pro 43.1 58 0.0013 20.0 4.0 35 87-121 43-79 (128)
470 PRK05976 dihydrolipoamide dehy 43.1 44 0.00095 25.9 4.1 28 92-120 180-207 (472)
471 PLN02356 phosphateglycerate ki 42.9 1E+02 0.0022 24.1 6.0 35 85-120 97-131 (423)
472 PRK14851 hypothetical protein; 42.9 39 0.00085 28.0 3.9 26 91-117 42-67 (679)
473 cd00640 Trp-synth-beta_II Tryp 42.7 77 0.0017 22.1 5.0 29 91-120 49-77 (244)
474 PF01455 HupF_HypC: HupF/HypC 42.7 19 0.0004 20.5 1.5 14 87-100 36-49 (68)
475 cd01523 RHOD_Lact_B Member of 42.6 70 0.0015 18.7 4.3 31 89-119 58-88 (100)
476 cd01491 Ube1_repeat1 Ubiquitin 42.6 44 0.00095 24.6 3.8 26 91-117 18-43 (286)
477 TIGR01372 soxA sarcosine oxida 42.5 32 0.00069 29.6 3.4 27 93-120 164-190 (985)
478 PRK14727 putative mercuric red 42.4 51 0.0011 25.7 4.3 28 92-120 188-215 (479)
479 PLN02970 serine racemase 42.3 64 0.0014 23.9 4.7 27 93-120 76-102 (328)
480 PLN02328 lysine-specific histo 42.1 39 0.00085 28.6 3.8 28 92-120 238-265 (808)
481 PLN02293 adenine phosphoribosy 42.1 83 0.0018 21.5 4.9 34 87-120 120-156 (187)
482 TIGR01372 soxA sarcosine oxida 41.5 72 0.0016 27.5 5.4 33 85-118 310-342 (985)
483 TIGR03385 CoA_CoA_reduc CoA-di 41.3 48 0.001 25.2 4.0 29 91-120 136-164 (427)
484 PRK13512 coenzyme A disulfide 41.3 83 0.0018 24.2 5.3 29 91-120 147-175 (438)
485 PRK06467 dihydrolipoamide dehy 41.2 48 0.001 25.8 4.0 29 91-120 173-201 (471)
486 TIGR02717 AcCoA-syn-alpha acet 41.1 88 0.0019 24.4 5.4 32 88-119 291-322 (447)
487 COG0686 Ald Alanine dehydrogen 41.0 26 0.00057 26.5 2.4 29 90-120 167-195 (371)
488 PRK05249 soluble pyridine nucl 41.0 50 0.0011 25.4 4.1 29 91-120 174-202 (461)
489 TIGR00080 pimt protein-L-isoas 41.0 68 0.0015 22.0 4.4 30 85-116 71-100 (215)
490 PRK07818 dihydrolipoamide dehy 40.9 49 0.0011 25.6 4.0 29 91-120 171-199 (466)
491 PRK06327 dihydrolipoamide dehy 40.9 50 0.0011 25.7 4.1 28 92-120 183-210 (475)
492 COG0332 FabH 3-oxoacyl-[acyl-c 40.8 29 0.00062 26.1 2.6 24 81-104 290-313 (323)
493 PRK12560 adenine phosphoribosy 40.7 91 0.002 21.2 4.9 33 88-120 110-145 (187)
494 PTZ00058 glutathione reductase 40.6 42 0.00091 27.0 3.7 25 95-120 51-75 (561)
495 PRK08246 threonine dehydratase 40.5 89 0.0019 22.9 5.2 29 91-120 67-95 (310)
496 PLN02546 glutathione reductase 40.4 43 0.00093 27.0 3.7 25 95-120 82-106 (558)
497 cd05006 SIS_GmhA Phosphoheptos 40.3 55 0.0012 21.7 3.8 35 87-121 97-133 (177)
498 PRK14694 putative mercuric red 40.3 53 0.0011 25.5 4.1 28 92-120 178-205 (468)
499 PRK13938 phosphoheptose isomer 40.1 97 0.0021 21.3 5.0 37 85-121 107-145 (196)
500 PLN02918 pyridoxine (pyridoxam 39.7 1.2E+02 0.0027 24.5 6.1 29 92-120 135-166 (544)
No 1
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=99.95 E-value=5.4e-28 Score=177.55 Aligned_cols=116 Identities=34% Similarity=0.502 Sum_probs=103.6
Q ss_pred CCCCCCCCCCCCC-----CCCCCccCcceEEEE----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCC
Q psy3430 4 SGKLPPDALPGDL-----AGQDCVLGLEFSGRD----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWT 65 (121)
Q Consensus 4 ~g~~~~~~~~~~~-----~~~~~~~G~e~~G~V----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~ 65 (121)
.|.+|.|.+.... .++|.++|.|++|+| ++||+|+... .+|+|+||.++|++.++++|+++|
T Consensus 37 ~gvN~~D~~~r~G~~~~~~~~P~i~G~d~aG~V~avG~~V~~~~~GdrV~~~~~~~~~G~~AEy~~v~a~~~~~~P~~ls 116 (326)
T COG0604 37 AGVNPIDVLVRQGLAPPVRPLPFIPGSEAAGVVVAVGSGVTGFKVGDRVAALGGVGRDGGYAEYVVVPADWLVPLPDGLS 116 (326)
T ss_pred eecChHHHHhccCCCCCCCCCCCcccceeEEEEEEeCCCCCCcCCCCEEEEccCCCCCCcceeEEEecHHHceeCCCCCC
Confidence 3555655554432 237999999999999 6999999986 679999999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430 66 LEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119 (121)
Q Consensus 66 ~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~v 119 (121)
+++||+++++++|||+++.+..++++|++|||+||+|++|++++|+||++|+++
T Consensus 117 ~~eAAal~~~~~TA~~~l~~~~~l~~g~~VLV~gaaGgVG~~aiQlAk~~G~~~ 170 (326)
T COG0604 117 FEEAAALPLAGLTAWLALFDRAGLKPGETVLVHGAAGGVGSAAIQLAKALGATV 170 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCEEEEecCCchHHHHHHHHHHHcCCcE
Confidence 999999999999999999999999999999999999999999999999999644
No 2
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=99.94 E-value=6.8e-27 Score=170.94 Aligned_cols=102 Identities=27% Similarity=0.397 Sum_probs=93.8
Q ss_pred CCCCccCcceEEEE----------ccCCEEEE----------------------------EccCCceeEEEEeCCCCeEE
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMG----------------------------LVAARSLATTVLADPSFLWE 59 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~----------------------------~~~~g~~~~~~~v~~~~~~~ 59 (121)
.+|.++|||.+|+| ++||||.. +..+|+|+||+++|++++++
T Consensus 56 ~~P~ipGHEivG~V~~vG~~V~~~k~GDrVgV~~~~~~Cg~C~~C~~G~E~~C~~~~~~gy~~~GGyaeyv~v~~~~~~~ 135 (339)
T COG1064 56 KLPLIPGHEIVGTVVEVGEGVTGLKVGDRVGVGWLVISCGECEYCRSGNENLCPNQKITGYTTDGGYAEYVVVPARYVVK 135 (339)
T ss_pred CCCccCCcceEEEEEEecCCCccCCCCCEEEecCccCCCCCCccccCcccccCCCccccceeecCcceeEEEEchHHeEE
Confidence 47999999999998 78999942 23469999999999999999
Q ss_pred cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
+|+++|+++||.+.|++.|.|++| +..+++||++|+|.| .|++|++++|+|+++|++|++
T Consensus 136 iP~~~d~~~aApllCaGiT~y~al-k~~~~~pG~~V~I~G-~GGlGh~avQ~Aka~ga~Via 195 (339)
T COG1064 136 IPEGLDLAEAAPLLCAGITTYRAL-KKANVKPGKWVAVVG-AGGLGHMAVQYAKAMGAEVIA 195 (339)
T ss_pred CCCCCChhhhhhhhcCeeeEeeeh-hhcCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEEE
Confidence 999999999999999999999999 569999999999999 679999999999999999974
No 3
>KOG1197|consensus
Probab=99.92 E-value=8.3e-25 Score=153.64 Aligned_cols=114 Identities=29% Similarity=0.382 Sum_probs=105.1
Q ss_pred CccCCCCCCCCCCCCCCCCCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHh
Q psy3430 1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAS 70 (121)
Q Consensus 1 ~~~~g~~~~~~~~~~~~~~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa 70 (121)
|++.|.|.. .+.|+++|.|.+|+| ++||||.-+.+.|.|+|+..+|...+.++|+.++++++|
T Consensus 53 y~RkGlY~~-------~plPytpGmEaaGvVvAvG~gvtdrkvGDrVayl~~~g~yaee~~vP~~kv~~vpe~i~~k~aa 125 (336)
T KOG1197|consen 53 YFRKGLYDP-------APLPYTPGMEAAGVVVAVGEGVTDRKVGDRVAYLNPFGAYAEEVTVPSVKVFKVPEAITLKEAA 125 (336)
T ss_pred HHhccccCC-------CCCCcCCCcccceEEEEecCCccccccccEEEEeccchhhheeccccceeeccCCcccCHHHHH
Confidence 356677732 247899999999998 899999999888999999999999999999999999999
Q ss_pred hcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 71 ~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
++.+.++|||..+++..++++|++||+|.|+|++|++++|++|+.|+++|+
T Consensus 126 a~llq~lTAy~ll~e~y~vkpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~ 176 (336)
T KOG1197|consen 126 ALLLQGLTAYMLLFEAYNVKPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIA 176 (336)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccHHHHHHHHHHhcCcEEEE
Confidence 999999999999999999999999999999999999999999999998773
No 4
>KOG0025|consensus
Probab=99.89 E-value=6.7e-23 Score=146.03 Aligned_cols=110 Identities=28% Similarity=0.303 Sum_probs=101.0
Q ss_pred CCCCCCCCCCCCCCCCCCccCcceEEEE----------ccCCEEEEEccC-CceeEEEEeCCCCeEEcCCCCCHHHHhhc
Q psy3430 4 SGKLPPDALPGDLAGQDCVLGLEFSGRD----------TKGRRVMGLVAA-RSLATTVLADPSFLWEVPAKWTLEEASTI 72 (121)
Q Consensus 4 ~g~~~~~~~~~~~~~~~~~~G~e~~G~V----------~~Gd~V~~~~~~-g~~~~~~~v~~~~~~~~p~~~~~~~aa~l 72 (121)
+|.||.+ +++|.+-|+|++|+| ++||+|+....+ |+|+||.+.+++.++++++.++.+.||++
T Consensus 68 QGvYpvr------P~~PAVgGnEGv~eVv~vGs~vkgfk~Gd~VIp~~a~lGtW~t~~v~~e~~Li~vd~~~pl~~AAT~ 141 (354)
T KOG0025|consen 68 QGVYPVR------PELPAVGGNEGVGEVVAVGSNVKGFKPGDWVIPLSANLGTWRTEAVFSESDLIKVDKDIPLASAATL 141 (354)
T ss_pred ccccCCC------CCCCcccCCcceEEEEEecCCcCccCCCCeEeecCCCCccceeeEeecccceEEcCCcCChhhhhee
Confidence 4555554 467899999999998 899999987654 99999999999999999999999999999
Q ss_pred chHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430 73 PVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119 (121)
Q Consensus 73 ~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~v 119 (121)
..+.+|||++|.+.-++++||+|..+||.+++|++.+|+||++|.+-
T Consensus 142 ~VNP~TAyrmL~dfv~L~~GD~vIQNganS~VG~~ViQlaka~Gikt 188 (354)
T KOG0025|consen 142 SVNPCTAYRMLKDFVQLNKGDSVIQNGANSGVGQAVIQLAKALGIKT 188 (354)
T ss_pred ccCchHHHHHHHHHHhcCCCCeeeecCcccHHHHHHHHHHHHhCcce
Confidence 99999999999999999999999999999999999999999999864
No 5
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=99.87 E-value=1.7e-21 Score=144.82 Aligned_cols=102 Identities=20% Similarity=0.225 Sum_probs=92.3
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEcc---------------------------------------------
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLVA--------------------------------------------- 42 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~--------------------------------------------- 42 (121)
.+|.++|||++|+| ++||+|+....
T Consensus 54 ~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~g~~~~~~~~~~~~g~~~~~ 133 (368)
T TIGR02818 54 VFPVILGHEGAGIVEAVGEGVTSVKVGDHVIPLYTAECGECKFCLSGKTNLCVAVRETQGKGLMPDGTSRFSKDGQPIYH 133 (368)
T ss_pred CCCeeeccccEEEEEEECCCCccCCCCCEEEEcCCCCCCCChhhhCCCcccccCcccccccccccCCccccccCCCcccc
Confidence 35789999999998 68999976421
Q ss_pred ---CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-E
Q psy3430 43 ---ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-T 118 (121)
Q Consensus 43 ---~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~ 118 (121)
+|+|+||+++|++.++++|+++++++++.+++++.|+|+++.+..++++|++|||+| +|++|++++|+||++|+ +
T Consensus 134 ~~~~G~~aey~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~iG~~a~q~Ak~~G~~~ 212 (368)
T TIGR02818 134 YMGCSTFSEYTVVPEISLAKINPAAPLEEVCLLGCGVTTGIGAVLNTAKVEEGDTVAVFG-LGGIGLSVIQGARMAKASR 212 (368)
T ss_pred cccCccceeeEEechhheEECCCCCCHHHhhhhcchhHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCe
Confidence 268999999999999999999999999999999999999997888999999999998 69999999999999999 6
Q ss_pred Ee
Q psy3430 119 VY 120 (121)
Q Consensus 119 vi 120 (121)
|+
T Consensus 213 Vi 214 (368)
T TIGR02818 213 II 214 (368)
T ss_pred EE
Confidence 76
No 6
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=99.86 E-value=2.1e-21 Score=144.06 Aligned_cols=102 Identities=25% Similarity=0.360 Sum_probs=91.3
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEE-c----------------------------------cCCceeEEEEe
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGL-V----------------------------------AARSLATTVLA 52 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~-~----------------------------------~~g~~~~~~~v 52 (121)
.+|.++|||++|+| ++||+|+.. . .+|+|+||+++
T Consensus 65 ~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v 144 (360)
T PLN02586 65 RYPIVPGHEIVGIVTKLGKNVKKFKEGDRVGVGVIVGSCKSCESCDQDLENYCPKMIFTYNSIGHDGTKNYGGYSDMIVV 144 (360)
T ss_pred CCCccCCcceeEEEEEECCCCCccCCCCEEEEccccCcCCCCccccCCCcccCCCccccccccccCCCcCCCccceEEEE
Confidence 35889999999998 689999731 1 15899999999
Q ss_pred CCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 53 DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 53 ~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++.++++|+++++++++.+.+.+.|+|+++.+...+++|++|+|.| +|++|++++|+||.+|++|+
T Consensus 145 ~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~vi 211 (360)
T PLN02586 145 DQHFVLRFPDNLPLDAGAPLLCAGITVYSPMKYYGMTEPGKHLGVAG-LGGLGHVAVKIGKAFGLKVT 211 (360)
T ss_pred chHHeeeCCCCCCHHHhhhhhcchHHHHHHHHHhcccCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 99999999999999999999999999999997777788999999988 69999999999999999875
No 7
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=99.86 E-value=3.9e-21 Score=141.08 Aligned_cols=100 Identities=23% Similarity=0.282 Sum_probs=90.3
Q ss_pred CCCccCcceEEEE----------ccCCEEEEE----------------------------ccCCceeEEEEeCCCCeEEc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGL----------------------------VAARSLATTVLADPSFLWEV 60 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~----------------------------~~~g~~~~~~~v~~~~~~~~ 60 (121)
+|.++|||++|+| ++||+|+.. ..+|+|+||++++++.++++
T Consensus 56 ~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~l 135 (329)
T TIGR02822 56 PRVTPGHEVVGEVAGRGADAGGFAVGDRVGIAWLRRTCGVCRYCRRGAENLCPASRYTGWDTDGGYAEYTTVPAAFAYRL 135 (329)
T ss_pred CCccCCcceEEEEEEECCCCcccCCCCEEEEcCccCcCCCChHHhCcCcccCCCcccCCcccCCcceeEEEeccccEEEC
Confidence 4689999999998 689999642 12589999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
|+++++++++.+++++.|||+++ +..++++|++|||+|+ |++|++++|+|+.+|++|+
T Consensus 136 P~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~VlV~G~-g~iG~~a~~~a~~~G~~vi 193 (329)
T TIGR02822 136 PTGYDDVELAPLLCAGIIGYRAL-LRASLPPGGRLGLYGF-GGSAHLTAQVALAQGATVH 193 (329)
T ss_pred CCCCCHHHhHHHhccchHHHHHH-HhcCCCCCCEEEEEcC-CHHHHHHHHHHHHCCCeEE
Confidence 99999999999999999999999 5689999999999995 9999999999999999876
No 8
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=99.86 E-value=4.2e-21 Score=142.73 Aligned_cols=102 Identities=23% Similarity=0.266 Sum_probs=91.5
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEcc---------------------------------------------
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLVA--------------------------------------------- 42 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~--------------------------------------------- 42 (121)
.+|.++|||++|+| ++||+|+....
T Consensus 60 ~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~~~~~~~ 139 (371)
T cd08281 60 PLPMALGHEAAGVVVEVGEGVTDLEVGDHVVLVFVPSCGHCRPCAEGRPALCEPGAAANGAGTLLSGGRRLRLRGGEINH 139 (371)
T ss_pred CCCccCCccceeEEEEeCCCCCcCCCCCEEEEccCCCCCCCccccCCCcccccCccccccccccccCcccccccCccccc
Confidence 35789999999998 68999986310
Q ss_pred ---CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-E
Q psy3430 43 ---ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-T 118 (121)
Q Consensus 43 ---~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~ 118 (121)
.|+|+||++++++.++++|+++++++++.+.++..|||+++.+..++++|++|+|.| +|++|++++|+||.+|+ +
T Consensus 140 ~~g~G~~aey~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~i~~g~~VlV~G-~G~vG~~a~~lak~~G~~~ 218 (371)
T cd08281 140 HLGVSAFAEYAVVSRRSVVKIDKDVPLEIAALFGCAVLTGVGAVVNTAGVRPGQSVAVVG-LGGVGLSALLGAVAAGASQ 218 (371)
T ss_pred ccCcccceeeEEecccceEECCCCCChHHhhhhcchHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCc
Confidence 268999999999999999999999999999999999999987888999999999998 69999999999999999 5
Q ss_pred Ee
Q psy3430 119 VY 120 (121)
Q Consensus 119 vi 120 (121)
|+
T Consensus 219 Vi 220 (371)
T cd08281 219 VV 220 (371)
T ss_pred EE
Confidence 65
No 9
>KOG0023|consensus
Probab=99.86 E-value=5.8e-22 Score=142.89 Aligned_cols=103 Identities=27% Similarity=0.375 Sum_probs=91.3
Q ss_pred CCCCCccCcceEEEE----------ccCCEEE------------------------------EEccC-----CceeEEEE
Q psy3430 17 AGQDCVLGLEFSGRD----------TKGRRVM------------------------------GLVAA-----RSLATTVL 51 (121)
Q Consensus 17 ~~~~~~~G~e~~G~V----------~~Gd~V~------------------------------~~~~~-----g~~~~~~~ 51 (121)
.+.|.++|||.+|+| ++||+|= ++..+ |+|++|++
T Consensus 63 s~~PlV~GHEiaG~VvkvGs~V~~~kiGD~vGVg~~~~sC~~CE~C~~~~E~yCpk~~~t~~g~~~DGt~~~ggf~~~~~ 142 (360)
T KOG0023|consen 63 SKYPLVPGHEIAGVVVKVGSNVTGFKIGDRVGVGWLNGSCLSCEYCKSGNENYCPKMHFTYNGVYHDGTITQGGFQEYAV 142 (360)
T ss_pred ccCCccCCceeeEEEEEECCCcccccccCeeeeeEEeccccCccccccCCcccCCceeEeccccccCCCCccCccceeEE
Confidence 468999999999998 7899981 11123 55999999
Q ss_pred eCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 52 ADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 52 v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
+++..++++|++++.++||.+.|++.|.|..| ...++.||+++-|.| .|++|.+++|+||++|.+|++
T Consensus 143 v~~~~a~kIP~~~pl~~aAPlLCaGITvYspL-k~~g~~pG~~vgI~G-lGGLGh~aVq~AKAMG~rV~v 210 (360)
T KOG0023|consen 143 VDEVFAIKIPENLPLASAAPLLCAGITVYSPL-KRSGLGPGKWVGIVG-LGGLGHMAVQYAKAMGMRVTV 210 (360)
T ss_pred EeeeeEEECCCCCChhhccchhhcceEEeehh-HHcCCCCCcEEEEec-CcccchHHHHHHHHhCcEEEE
Confidence 99999999999999999999999999999999 778899999999999 555999999999999999874
No 10
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=99.86 E-value=7.2e-21 Score=138.83 Aligned_cols=99 Identities=27% Similarity=0.390 Sum_probs=91.0
Q ss_pred CCCccCcceEEEE-------ccCCEEEEEccCCceeEEEEeCCCCeEEc----CCCCCHHHH-hhcchHHHHHHHHHHhh
Q psy3430 19 QDCVLGLEFSGRD-------TKGRRVMGLVAARSLATTVLADPSFLWEV----PAKWTLEEA-STIPVVYATAYYSLIVR 86 (121)
Q Consensus 19 ~~~~~G~e~~G~V-------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~----p~~~~~~~a-a~l~~~~~ta~~~l~~~ 86 (121)
.|.++|.|++|+| ++||+|+++ ++|+||++++.+.+.++ |++++++++ +++++++.|||+++.+.
T Consensus 57 ~~~i~G~~~~g~v~~~~~~~~~GdrV~~~---~~~~~~~~~~~~~~~~l~~~~p~~~~~~~aaa~l~~~~~TA~~~l~~~ 133 (325)
T TIGR02825 57 GDTMMGQQVARVVESKNVALPKGTIVLAS---PGWTSHSISDGKDLEKLLTEWPDTLPLSLALGTVGMPGLTAYFGLLEI 133 (325)
T ss_pred CCcEecceEEEEEEeCCCCCCCCCEEEEe---cCceeeEEechhheEEccccccCCCCHHHHHHhcccHHHHHHHHHHHH
Confidence 4679999999999 789999986 46999999999888777 899999987 68999999999999888
Q ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.++++|++|||+|++|++|++++|+||.+|++|+
T Consensus 134 ~~~~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi 167 (325)
T TIGR02825 134 CGVKGGETVMVNAAAGAVGSVVGQIAKLKGCKVV 167 (325)
T ss_pred hCCCCCCEEEEeCCccHHHHHHHHHHHHcCCEEE
Confidence 9999999999999999999999999999999876
No 11
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=99.85 E-value=7e-21 Score=139.51 Aligned_cols=100 Identities=26% Similarity=0.314 Sum_probs=90.9
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEEc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWEV 60 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~~ 60 (121)
+|.++|||++|+| ++||+|+... .+|+|+||++++++.++++
T Consensus 54 ~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~~g~~~~G~~ae~~~v~~~~~~~~ 133 (339)
T cd08239 54 QGVIPGHEPAGVVVAVGPGVTHFRVGDRVMVYHYVGCGACRNCRRGWMQLCTSKRAAYGWNRDGGHAEYMLVPEKTLIPL 133 (339)
T ss_pred CCceeccCceEEEEEECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCcCcccccccCCCCcceeEEEechHHeEEC
Confidence 4789999999998 6899997642 2589999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
|+++++++++.+++++.|+|+++ +..++++|++|+|+| +|++|++++|+||.+|++ |+
T Consensus 134 P~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~vlV~G-~G~vG~~~~~~ak~~G~~~vi 192 (339)
T cd08239 134 PDDLSFADGALLLCGIGTAYHAL-RRVGVSGRDTVLVVG-AGPVGLGALMLARALGAEDVI 192 (339)
T ss_pred CCCCCHHHhhhhcchHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999999 567899999999998 699999999999999997 76
No 12
>PLN02740 Alcohol dehydrogenase-like
Probab=99.85 E-value=6.3e-21 Score=142.34 Aligned_cols=102 Identities=17% Similarity=0.228 Sum_probs=92.2
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------------------------- 41 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------------------------- 41 (121)
.+|.++|||++|+| ++||+|+...
T Consensus 64 ~~p~i~GhE~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~C~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 143 (381)
T PLN02740 64 AYPRILGHEAAGIVESVGEGVEDLKAGDHVIPIFNGECGDCRYCKRDKTNLCETYRVDPFKSVMVNDGKTRFSTKGDGQP 143 (381)
T ss_pred CCCccccccceEEEEEeCCCCCcCCCCCEEEecCCCCCCCChhhcCCCcccccCccccccccccccCCCcccccccCCCc
Confidence 45889999999998 6899998642
Q ss_pred -----cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCC
Q psy3430 42 -----AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMG 116 (121)
Q Consensus 42 -----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G 116 (121)
.+|+|+||++++++.++++|+++++++++.+.+++.|+|+++.+..++++|++|+|+| +|++|++++|+||.+|
T Consensus 144 ~~~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~G~vG~~a~q~ak~~G 222 (381)
T PLN02740 144 IYHFLNTSTFTEYTVLDSACVVKIDPNAPLKKMSLLSCGVSTGVGAAWNTANVQAGSSVAIFG-LGAVGLAVAEGARARG 222 (381)
T ss_pred ccccccCccceeEEEEehHHeEECCCCCCHHHhhhhcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHCC
Confidence 1489999999999999999999999999999999999999987888999999999998 6999999999999999
Q ss_pred C-EEe
Q psy3430 117 C-TVY 120 (121)
Q Consensus 117 ~-~vi 120 (121)
+ +|+
T Consensus 223 ~~~Vi 227 (381)
T PLN02740 223 ASKII 227 (381)
T ss_pred CCcEE
Confidence 9 575
No 13
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=99.85 E-value=1.4e-20 Score=139.65 Aligned_cols=102 Identities=15% Similarity=0.188 Sum_probs=92.1
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------------------------- 41 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------------------------- 41 (121)
.+|.++|||++|+| ++||+|+.+.
T Consensus 55 ~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~~g~~~~~~~~~~~~~g~~~~ 134 (369)
T cd08301 55 LFPRILGHEAAGIVESVGEGVTDLKPGDHVLPVFTGECKECRHCKSEKSNMCDLLRINTDRGVMINDGKSRFSINGKPIY 134 (369)
T ss_pred CCCcccccccceEEEEeCCCCCccccCCEEEEccCCCCCCCchhcCCCcccCcCcccccccccccCCCccccccCCccee
Confidence 45889999999998 6899998641
Q ss_pred ---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-
Q psy3430 42 ---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC- 117 (121)
Q Consensus 42 ---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~- 117 (121)
..|+|+||+++++..++++|+++++++++.++++..|+|+++.+..++++|++|+|+| +|++|++++|+|+.+|+
T Consensus 135 ~~~~~G~~aey~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~q~ak~~G~~ 213 (369)
T cd08301 135 HFVGTSTFSEYTVVHVGCVAKINPEAPLDKVCLLSCGVSTGLGAAWNVAKVKKGSTVAIFG-LGAVGLAVAEGARIRGAS 213 (369)
T ss_pred eeeccccceeEEEEecccEEECCCCCCHHHhhhhcchhhHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 1278999999999999999999999999999999999999987888999999999998 69999999999999998
Q ss_pred EEe
Q psy3430 118 TVY 120 (121)
Q Consensus 118 ~vi 120 (121)
+|+
T Consensus 214 ~vi 216 (369)
T cd08301 214 RII 216 (369)
T ss_pred eEE
Confidence 675
No 14
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=99.85 E-value=9.3e-21 Score=138.93 Aligned_cols=102 Identities=23% Similarity=0.249 Sum_probs=88.7
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHH----HhhcchHHHHHHHHH
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEE----ASTIPVVYATAYYSL 83 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~----aa~l~~~~~ta~~~l 83 (121)
++|.++|+|++|+| ++||+|+++. ++|+||++++++.++++|+++++.+ +++++.++.|||+++
T Consensus 67 ~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~--~~~ae~~~v~~~~~~~iP~~~~~~~~~~~~a~~~~~~~ta~~al 144 (345)
T cd08293 67 PWQLSQVLDGGGVGVVEESKHQKFAVGDIVTSFN--WPWQTYAVLDGSSLEKVDPQLVDGHLSYFLGAVGLPGLTALIGI 144 (345)
T ss_pred CccCCCceEeeEEEEEeccCCCCCCCCCEEEecC--CCceeEEEecHHHeEEcCccccccchhHHhhhcCcHHHHHHHHH
Confidence 45789999999998 6899998764 6799999999999999999854322 457788999999999
Q ss_pred HhhcCCCCC--CEEEEecCCchHHHHHHHHHHHCCC-EEeC
Q psy3430 84 IVRGKMRPG--ESLLVHAGAGGLGQAAISIALHMGC-TVYT 121 (121)
Q Consensus 84 ~~~~~~~~g--~~vli~ga~g~vG~~aiqla~~~G~-~vi~ 121 (121)
.+.+++++| ++|||+||+|++|++++|+||++|+ +|++
T Consensus 145 ~~~~~~~~g~~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~ 185 (345)
T cd08293 145 QEKGHITPGANQTMVVSGAAGACGSLAGQIGRLLGCSRVVG 185 (345)
T ss_pred HHhccCCCCCCCEEEEECCCcHHHHHHHHHHHHcCCCEEEE
Confidence 888889887 9999999999999999999999999 7763
No 15
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=99.85 E-value=9.4e-21 Score=139.47 Aligned_cols=100 Identities=17% Similarity=0.175 Sum_probs=85.9
Q ss_pred CCCCccCcceEEEE--------ccCCEEEEE--------------------------------ccCCceeEEEEeCCCCe
Q psy3430 18 GQDCVLGLEFSGRD--------TKGRRVMGL--------------------------------VAARSLATTVLADPSFL 57 (121)
Q Consensus 18 ~~~~~~G~e~~G~V--------~~Gd~V~~~--------------------------------~~~g~~~~~~~v~~~~~ 57 (121)
.+|.++|||++|+| ++||+|+.. ..+|+|+||++++++.+
T Consensus 58 ~~p~v~GhE~~G~V~~v~v~~~~vGdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~~~~~~G~~aey~~v~~~~~ 137 (343)
T PRK09880 58 KAPMVLGHEVIGKIVHSDSSGLKEGQTVAINPSKPCGHCKYCLSHNENQCTTMRFFGSAMYFPHVDGGFTRYKVVDTAQC 137 (343)
T ss_pred cCCcccCcccEEEEEEecCccCCCCCEEEECCCCCCcCChhhcCCChhhCCCcceeecccccCCCCCceeeeEEechHHe
Confidence 46899999999998 789999742 12599999999999999
Q ss_pred EEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 58 WEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 58 ~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
+++|++++++++ ++..++.|+|+++ +.....+|++|+|+| +|++|++++|+|+++|+ +|+
T Consensus 138 ~~~P~~l~~~~a-a~~~~~~~a~~al-~~~~~~~g~~VlV~G-~G~vG~~aiqlak~~G~~~Vi 198 (343)
T PRK09880 138 IPYPEKADEKVM-AFAEPLAVAIHAA-HQAGDLQGKRVFVSG-VGPIGCLIVAAVKTLGAAEIV 198 (343)
T ss_pred EECCCCCCHHHH-HhhcHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence 999999999765 4667888999999 445667899999998 59999999999999999 565
No 16
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=99.85 E-value=9.1e-21 Score=139.69 Aligned_cols=101 Identities=15% Similarity=0.068 Sum_probs=85.3
Q ss_pred CCCCccCcceEEEE--------ccCCEEEEEc------------------------cCCceeEEEEeCCCCeEEcCCCCC
Q psy3430 18 GQDCVLGLEFSGRD--------TKGRRVMGLV------------------------AARSLATTVLADPSFLWEVPAKWT 65 (121)
Q Consensus 18 ~~~~~~G~e~~G~V--------~~Gd~V~~~~------------------------~~g~~~~~~~v~~~~~~~~p~~~~ 65 (121)
.+|.++|||++|+| ++||+|+... .+|+|+||+++|++.++++|++++
T Consensus 57 ~~P~i~GhE~~G~V~~~g~~~~~vGdrV~~~~~~~~~~~~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~vP~~l~ 136 (341)
T cd08237 57 KLPMALIHEGIGVVVSDPTGTYKVGTKVVMVPNTPVEKDEIIPENYLPSSRFRSSGYDGFMQDYVFLPPDRLVKLPDNVD 136 (341)
T ss_pred CCCeeccceeEEEEEeeCCCccCCCCEEEECCCCCchhcccchhccCCCcceeEecCCCceEEEEEEchHHeEECCCCCC
Confidence 46899999999998 7999997531 258899999999999999999999
Q ss_pred HHHHhhcchHHHHHHHHHHhh--cCCCCCCEEEEecCCchHHHHHHHHHHH-CC-CEEe
Q psy3430 66 LEEASTIPVVYATAYYSLIVR--GKMRPGESLLVHAGAGGLGQAAISIALH-MG-CTVY 120 (121)
Q Consensus 66 ~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~vli~ga~g~vG~~aiqla~~-~G-~~vi 120 (121)
+++++ +..+..++++++... ..+++||+|+|.| +|++|++++|+++. .| ++|+
T Consensus 137 ~~~aa-~~~~~~~a~~a~~~~~~~~~~~g~~VlV~G-~G~vGl~~~~~a~~~~g~~~vi 193 (341)
T cd08237 137 PEVAA-FTELVSVGVHAISRFEQIAHKDRNVIGVWG-DGNLGYITALLLKQIYPESKLV 193 (341)
T ss_pred hHHhh-hhchHHHHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhcCCCcEE
Confidence 98875 556889999998543 4568999999999 69999999999986 55 4665
No 17
>KOG0024|consensus
Probab=99.84 E-value=4e-21 Score=138.77 Aligned_cols=100 Identities=26% Similarity=0.308 Sum_probs=89.1
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEE
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWE 59 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~ 59 (121)
+.|.++|||.+|+| ++||||.-=. .+|+++||++.++..++|
T Consensus 60 k~PmvlGHEssGiV~evG~~Vk~LkVGDrVaiEpg~~c~~cd~CK~GrYNlCp~m~f~atpp~~G~la~y~~~~~dfc~K 139 (354)
T KOG0024|consen 60 KKPMVLGHESSGIVEEVGDEVKHLKVGDRVAIEPGLPCRDCDFCKEGRYNLCPHMVFCATPPVDGTLAEYYVHPADFCYK 139 (354)
T ss_pred ccccccccccccchhhhcccccccccCCeEEecCCCccccchhhhCcccccCCccccccCCCcCCceEEEEEechHheee
Confidence 47999999999999 8999994210 259999999999999999
Q ss_pred cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
+||++|++++ +|..++.+++|+. +++++++|++|||+| +|++|+.+...||++|| +|+
T Consensus 140 LPd~vs~eeG-Al~ePLsV~~HAc-r~~~vk~Gs~vLV~G-AGPIGl~t~l~Aka~GA~~VV 198 (354)
T KOG0024|consen 140 LPDNVSFEEG-ALIEPLSVGVHAC-RRAGVKKGSKVLVLG-AGPIGLLTGLVAKAMGASDVV 198 (354)
T ss_pred CCCCCchhhc-ccccchhhhhhhh-hhcCcccCCeEEEEC-CcHHHHHHHHHHHHcCCCcEE
Confidence 9999999988 4556899999999 899999999999999 89999999999999999 554
No 18
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=99.84 E-value=2.9e-20 Score=134.78 Aligned_cols=101 Identities=23% Similarity=0.205 Sum_probs=93.4
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK 88 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~ 88 (121)
.|.++|||++|+| ++||+|+++..+|+|++|+.+++..++++|+++++++++.++..+.|+|+++ +..+
T Consensus 58 ~p~~~G~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~~-~~~~ 136 (324)
T cd08292 58 LPAIGGSEAVGVVDAVGEGVKGLQVGQRVAVAPVHGTWAEYFVAPADGLVPLPDGISDEVAAQLIAMPLSALMLL-DFLG 136 (324)
T ss_pred CCCCCCcceEEEEEEeCCCCCCCCCCCEEEeccCCCcceeEEEEchHHeEECCCCCCHHHhhhccccHHHHHHHH-HhhC
Confidence 4678999999998 5799999986568999999999999999999999999999999999999998 5689
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++|++|+|+|++|.+|++++|+|+++|++++
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~ 168 (324)
T cd08292 137 VKPGQWLIQNAAGGAVGKLVAMLAAARGINVI 168 (324)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCCCeEE
Confidence 99999999999999999999999999999876
No 19
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=99.84 E-value=5.1e-20 Score=133.92 Aligned_cols=100 Identities=25% Similarity=0.343 Sum_probs=89.8
Q ss_pred CCCCccCcceEEEE-------ccCCEEEEEccCCceeEEEEeCCC---CeEEcCCCCC-----HHHHhhcchHHHHHHHH
Q psy3430 18 GQDCVLGLEFSGRD-------TKGRRVMGLVAARSLATTVLADPS---FLWEVPAKWT-----LEEASTIPVVYATAYYS 82 (121)
Q Consensus 18 ~~~~~~G~e~~G~V-------~~Gd~V~~~~~~g~~~~~~~v~~~---~~~~~p~~~~-----~~~aa~l~~~~~ta~~~ 82 (121)
..|.++|+|++|+| ++||+|++. ++|++|++++++ .++++|++++ ....+++++++.|||++
T Consensus 58 ~~p~v~G~e~~G~V~~~~~~~~~Gd~V~~~---~~~~~~~~~~~~~~~~~~~iP~~~~~~~~~~~~~a~~~~~~~ta~~a 134 (329)
T cd08294 58 EGDTMIGTQVAKVIESKNSKFPVGTIVVAS---FGWRTHTVSDGKDQPDLYKLPADLPDDLPPSLALGVLGMPGLTAYFG 134 (329)
T ss_pred CCCcEecceEEEEEecCCCCCCCCCEEEee---CCeeeEEEECCccccceEECCccccccCChHHHHHhcccHHHHHHHH
Confidence 35789999999998 689999986 579999999999 9999999988 23335788999999999
Q ss_pred HHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 83 LIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 83 l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.+..++++|++|||+||+|++|++++|+|+.+|++|+
T Consensus 135 l~~~~~~~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi 172 (329)
T cd08294 135 LLEICKPKAGETVVVNGAAGAVGSLVGQIAKIKGCKVI 172 (329)
T ss_pred HHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence 98889999999999999999999999999999999876
No 20
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=99.84 E-value=2.6e-20 Score=138.35 Aligned_cols=102 Identities=20% Similarity=0.268 Sum_probs=91.7
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------------------------- 41 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------------------------- 41 (121)
.+|.++|||++|+| ++||+|+...
T Consensus 55 ~~p~v~G~E~~G~V~~vG~~v~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~~g~~~~g~~~~~~~g~~~~~ 134 (368)
T cd08300 55 LFPVILGHEGAGIVESVGEGVTSVKPGDHVIPLYTPECGECKFCKSGKTNLCQKIRATQGKGLMPDGTSRFSCKGKPIYH 134 (368)
T ss_pred CCCceeccceeEEEEEeCCCCccCCCCCEEEEcCCCCCCCChhhcCCCcCcCCCccccccccccCCCccccccCCccccc
Confidence 46789999999998 6899998641
Q ss_pred --cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-E
Q psy3430 42 --AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-T 118 (121)
Q Consensus 42 --~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~ 118 (121)
..|+|+||++++++.++++|+++++++++.+.+++.|+|+++.+..++++|++|||+| +|++|++++|+||.+|+ +
T Consensus 135 ~~~~G~~aey~~v~~~~~~~iP~~l~~~~aa~l~~~~~ta~~a~~~~~~~~~g~~VlV~G-~G~vG~~a~~~ak~~G~~~ 213 (368)
T cd08300 135 FMGTSTFSEYTVVAEISVAKINPEAPLDKVCLLGCGVTTGYGAVLNTAKVEPGSTVAVFG-LGAVGLAVIQGAKAAGASR 213 (368)
T ss_pred ccccccceeEEEEchhceEeCCCCCChhhhhhhccchhhhHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCe
Confidence 1258999999999999999999999999999999999999987888999999999998 69999999999999999 5
Q ss_pred Ee
Q psy3430 119 VY 120 (121)
Q Consensus 119 vi 120 (121)
|+
T Consensus 214 vi 215 (368)
T cd08300 214 II 215 (368)
T ss_pred EE
Confidence 75
No 21
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=99.84 E-value=4.7e-20 Score=136.32 Aligned_cols=99 Identities=24% Similarity=0.271 Sum_probs=87.6
Q ss_pred CCCccCc--ceEEEE----------ccCCEEEEEccCCceeEEEEeCCCC--eEE--cCCCCCHH-HHhhcchHHHHHHH
Q psy3430 19 QDCVLGL--EFSGRD----------TKGRRVMGLVAARSLATTVLADPSF--LWE--VPAKWTLE-EASTIPVVYATAYY 81 (121)
Q Consensus 19 ~~~~~G~--e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~--~~~--~p~~~~~~-~aa~l~~~~~ta~~ 81 (121)
+|.++|+ |++|+| ++||+|+++ ++|+||.++++.. +.+ +|++++++ +++++++++.|||+
T Consensus 72 ~p~~~G~~~~~~G~v~~vg~~v~~~~~Gd~V~~~---~~~aey~~v~~~~~~~~~~~~P~~~~~~~~aa~l~~~~~TA~~ 148 (348)
T PLN03154 72 PPFVPGQRIEGFGVSKVVDSDDPNFKPGDLISGI---TGWEEYSLIRSSDNQLRKIQLQDDIPLSYHLGLLGMAGFTAYA 148 (348)
T ss_pred CCcCCCCeeEeeEEEEEEecCCCCCCCCCEEEec---CCcEEEEEEeccccceEEccCcCCCCHHHHHHHcccHHHHHHH
Confidence 5788998 788887 689999876 6899999998753 544 48999986 68899999999999
Q ss_pred HHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 82 SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 82 ~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++.+..++++|++|||+|++|++|++++|+||++|++|+
T Consensus 149 al~~~~~~~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi 187 (348)
T PLN03154 149 GFYEVCSPKKGDSVFVSAASGAVGQLVGQLAKLHGCYVV 187 (348)
T ss_pred HHHHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence 998889999999999999999999999999999999876
No 22
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=99.84 E-value=1.6e-20 Score=137.79 Aligned_cols=99 Identities=22% Similarity=0.212 Sum_probs=86.2
Q ss_pred CCCccCcce-----EEEE-------ccCCEEEEEccCCceeEEEEeCC-CCeEEcC-CCCCHH-HHhhcchHHHHHHHHH
Q psy3430 19 QDCVLGLEF-----SGRD-------TKGRRVMGLVAARSLATTVLADP-SFLWEVP-AKWTLE-EASTIPVVYATAYYSL 83 (121)
Q Consensus 19 ~~~~~G~e~-----~G~V-------~~Gd~V~~~~~~g~~~~~~~v~~-~~~~~~p-~~~~~~-~aa~l~~~~~ta~~~l 83 (121)
+|.++|++. +++| ++||+|+++ |+|+||+++++ ..++++| ++++++ +++++++++.|||+++
T Consensus 67 ~p~~~g~~~~g~~~~~~v~~~v~~~~vGd~V~~~---g~~aey~~v~~~~~~~~lp~~~~~~~~~aa~l~~~~~tA~~~l 143 (338)
T cd08295 67 PPFKPGEVITGYGVAKVVDSGNPDFKVGDLVWGF---TGWEEYSLIPRGQDLRKIDHTDVPLSYYLGLLGMPGLTAYAGF 143 (338)
T ss_pred CCcCCCCeEeccEEEEEEecCCCCCCCCCEEEec---CCceeEEEecchhceeecCCCCCCHHHHHHhcccHHHHHHHHH
Confidence 456777543 3334 689999976 68999999999 7999995 678887 7899999999999999
Q ss_pred HhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 84 IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 84 ~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+..++++|++|+|+||+|++|++++|+||.+|++|+
T Consensus 144 ~~~~~~~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi 180 (338)
T cd08295 144 YEVCKPKKGETVFVSAASGAVGQLVGQLAKLKGCYVV 180 (338)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence 8889999999999999999999999999999999876
No 23
>KOG1198|consensus
Probab=99.84 E-value=1.6e-20 Score=138.93 Aligned_cols=103 Identities=32% Similarity=0.497 Sum_probs=89.7
Q ss_pred CCCCccCcceEEEE--------------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430 18 GQDCVLGLEFSGRD--------------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL 83 (121)
Q Consensus 18 ~~~~~~G~e~~G~V--------------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l 83 (121)
.+|.+.+.++.|++ ..||.+.....+|+|+||.++|+..++++|++++++++++++.++.|||.++
T Consensus 64 ~~p~ii~~~g~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~g~~aey~v~p~~~~~~~P~~l~~~~aa~~p~~~~tA~~al 143 (347)
T KOG1198|consen 64 EFPGIIGRDGSGVVGAVESVGDDVVGGWVHGDAVVAFLSSGGLAEYVVVPEKLLVKIPESLSFEEAAALPLAALTALSAL 143 (347)
T ss_pred CCCCccccccCCceeEEeccccccccceEeeeEEeeccCCCceeeEEEcchhhccCCCCccChhhhhcCchHHHHHHHHH
Confidence 46666666666663 3455555566679999999999999999999999999999999999999999
Q ss_pred Hhhc------CCCCCCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430 84 IVRG------KMRPGESLLVHAGAGGLGQAAISIALHMG-CTVY 120 (121)
Q Consensus 84 ~~~~------~~~~g~~vli~ga~g~vG~~aiqla~~~G-~~vi 120 (121)
.... +.++|++|||+||+|++|++++|+|+.++ ++|+
T Consensus 144 ~~~~~~~~~~~~~~g~~vLv~ggsggVG~~aiQlAk~~~~~~v~ 187 (347)
T KOG1198|consen 144 FQLAPGKRSKKLSKGKSVLVLGGSGGVGTAAIQLAKHAGAIKVV 187 (347)
T ss_pred HhccccccccccCCCCeEEEEeCCcHHHHHHHHHHHhcCCcEEE
Confidence 9999 99999999999999999999999999999 5654
No 24
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=99.84 E-value=3.1e-20 Score=135.51 Aligned_cols=103 Identities=29% Similarity=0.366 Sum_probs=94.3
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV 85 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~ 85 (121)
+|.++|+|++|+| ++||+|+++. ..|+|+||++++++.++++|+++++++++.++++..|||+++.+
T Consensus 58 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~~ 137 (336)
T TIGR02817 58 QPKILGWDAAGVVVAVGDEVTLFKPGDEVWYAGDIDRPGSNAEFHLVDERIVGHKPKSLSFAEAAALPLTSITAWELLFD 137 (336)
T ss_pred CCcccceeeEEEEEEeCCCCCCCCCCCEEEEcCCCCCCCcccceEEEcHHHcccCCCCCCHHHHhhhhHHHHHHHHHHHH
Confidence 4678999999998 5899999874 25899999999999999999999999999999999999999988
Q ss_pred hcCCCC-----CCEEEEecCCchHHHHHHHHHHHC-CCEEeC
Q psy3430 86 RGKMRP-----GESLLVHAGAGGLGQAAISIALHM-GCTVYT 121 (121)
Q Consensus 86 ~~~~~~-----g~~vli~ga~g~vG~~aiqla~~~-G~~vi~ 121 (121)
..++++ |++|+|+|++|++|++++|+||.+ |++|++
T Consensus 138 ~~~~~~~~~~~g~~vlV~ga~g~vg~~~~~~ak~~~G~~vi~ 179 (336)
T TIGR02817 138 RLGINDPVAGDKRALLIIGGAGGVGSILIQLARQLTGLTVIA 179 (336)
T ss_pred hcCCCCCCCCCCCEEEEEcCCcHHHHHHHHHHHHhCCCEEEE
Confidence 888887 999999999999999999999998 998763
No 25
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=99.84 E-value=4.9e-20 Score=136.73 Aligned_cols=102 Identities=22% Similarity=0.316 Sum_probs=92.0
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------------------------- 41 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------------------------- 41 (121)
.+|.++|||++|+| ++||+|+...
T Consensus 54 ~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~c~~c~~c~~g~~~~c~~~~~~~~g~~~~~~~~~~~~~~~~~~~ 133 (365)
T cd08277 54 LFPVILGHEGAGIVESVGEGVTNLKPGDKVIPLFIGQCGECSNCRSGKTNLCQKYRANESGLMPDGTSRFTCKGKKIYHF 133 (365)
T ss_pred CCCeecccceeEEEEeeCCCCccCCCCCEEEECCCCCCCCCchhcCcCcccCcCccccccccccCCccccccCCcccccc
Confidence 45789999999998 6899998742
Q ss_pred -cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EE
Q psy3430 42 -AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TV 119 (121)
Q Consensus 42 -~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~v 119 (121)
..|+|+||++++++.++++|+++++++++.+.+++.|+|+++.+..++++|++|+|+| +|++|++++|+|+.+|+ +|
T Consensus 134 ~~~g~~ae~~~v~~~~~~~lP~~l~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~~V 212 (365)
T cd08277 134 LGTSTFSQYTVVDENYVAKIDPAAPLEHVCLLGCGFSTGYGAAWNTAKVEPGSTVAVFG-LGAVGLSAIMGAKIAGASRI 212 (365)
T ss_pred cccccceeeEEEchhheEECCCCCCHHHhhHhcchhHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeE
Confidence 1378999999999999999999999999999999999999987888999999999997 69999999999999999 66
Q ss_pred e
Q psy3430 120 Y 120 (121)
Q Consensus 120 i 120 (121)
+
T Consensus 213 i 213 (365)
T cd08277 213 I 213 (365)
T ss_pred E
Confidence 5
No 26
>PLN02827 Alcohol dehydrogenase-like
Probab=99.84 E-value=3.5e-20 Score=138.38 Aligned_cols=102 Identities=17% Similarity=0.169 Sum_probs=90.9
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEcc---------------------------------------------
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLVA--------------------------------------------- 42 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~--------------------------------------------- 42 (121)
.+|.++|||++|+| ++||+|+....
T Consensus 62 ~~p~i~GhE~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 141 (378)
T PLN02827 62 LFPRIFGHEASGIVESIGEGVTEFEKGDHVLTVFTGECGSCRHCISGKSNMCQVLGLERKGVMHSDQKTRFSIKGKPVYH 141 (378)
T ss_pred CCCeeecccceEEEEEcCCCCcccCCCCEEEEecCCCCCCChhhhCcCcccccCccccccccccCCCcccccccCccccc
Confidence 35789999999998 68999987531
Q ss_pred ---CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-
Q psy3430 43 ---ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT- 118 (121)
Q Consensus 43 ---~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~- 118 (121)
+|+|+||++++++.++++|+++++++++.+.+++.|+|+++.+..++++|++|||+| +|++|++++|+||++|++
T Consensus 142 ~~~~G~~aeyv~v~~~~~~~iP~~l~~~~aa~l~~~~~~a~~~~~~~~~~~~g~~VlV~G-~G~vG~~~iqlak~~G~~~ 220 (378)
T PLN02827 142 YCAVSSFSEYTVVHSGCAVKVDPLAPLHKICLLSCGVAAGLGAAWNVADVSKGSSVVIFG-LGTVGLSVAQGAKLRGASQ 220 (378)
T ss_pred ccccccceeeEEechhheEECCCCCCHHHhhhhcchhHhhHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCe
Confidence 279999999999999999999999999999989999999886778899999999998 699999999999999984
Q ss_pred Ee
Q psy3430 119 VY 120 (121)
Q Consensus 119 vi 120 (121)
|+
T Consensus 221 vi 222 (378)
T PLN02827 221 II 222 (378)
T ss_pred EE
Confidence 54
No 27
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=99.83 E-value=3.7e-20 Score=138.28 Aligned_cols=102 Identities=24% Similarity=0.334 Sum_probs=89.1
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc-----------------------------------cCCceeEEEEe
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV-----------------------------------AARSLATTVLA 52 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~-----------------------------------~~g~~~~~~~v 52 (121)
.+|.++|||++|+| ++||+|.... .+|+|+||+++
T Consensus 59 ~~p~i~GhE~aG~Vv~vG~~v~~~~vGdrV~~~~~~~~cg~C~~C~~g~~~~C~~~~~~~~~~~~~g~~~~G~~aey~~v 138 (375)
T PLN02178 59 RYPIIPGHEIVGIATKVGKNVTKFKEGDRVGVGVIIGSCQSCESCNQDLENYCPKVVFTYNSRSSDGTRNQGGYSDVIVV 138 (375)
T ss_pred CCCcccCceeeEEEEEECCCCCccCCCCEEEEcCccCCCCCChhHhCcchhcCCCccccccccccCCCcCCCccccEEEE
Confidence 35789999999998 6899997311 15899999999
Q ss_pred CCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC-CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 53 DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK-MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 53 ~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~-~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++.++++|+++++++++++.+...|+|+++.+... .++|++|+|.| +|++|++++|+||.+|++|+
T Consensus 139 ~~~~~~~lP~~ls~~~aa~l~~~~~ta~~al~~~~~~~~~g~~VlV~G-~G~vG~~avq~Ak~~Ga~Vi 206 (375)
T PLN02178 139 DHRFVLSIPDGLPSDSGAPLLCAGITVYSPMKYYGMTKESGKRLGVNG-LGGLGHIAVKIGKAFGLRVT 206 (375)
T ss_pred chHHeEECCCCCCHHHcchhhccchHHHHHHHHhCCCCCCCCEEEEEc-ccHHHHHHHHHHHHcCCeEE
Confidence 999999999999999999999999999999855543 36899999998 69999999999999999876
No 28
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=99.83 E-value=5.2e-20 Score=136.23 Aligned_cols=102 Identities=22% Similarity=0.214 Sum_probs=91.4
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------cCCcee
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------AARSLA 47 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------~~g~~~ 47 (121)
.+|.++|||++|+| ++||+|+... .+|+|+
T Consensus 53 ~~p~i~G~e~~G~V~~vG~~v~~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~~~~~~~~~g~~~~~~~~~G~~a 132 (358)
T TIGR03451 53 EFPFLLGHEAAGVVEAVGEGVTDVAPGDYVVLNWRAVCGQCRACKRGRPWYCFDTHNATQKMTLTDGTELSPALGIGAFA 132 (358)
T ss_pred cCCcccccceEEEEEEeCCCCcccCCCCEEEEccCCCCCCChHHhCcCcccCcCccccccccccccCccccccccccccc
Confidence 35789999999998 6899997521 248999
Q ss_pred EEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 48 TTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 48 ~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
||+.++++.++++|+++++++++.+.++..|+|+++.+..++++|++|||+| +|++|++++|+||.+|++ |+
T Consensus 133 ey~~v~~~~~~~ip~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~a~~~ak~~G~~~Vi 205 (358)
T TIGR03451 133 EKTLVHAGQCTKVDPAADPAAAGLLGCGVMAGLGAAVNTGGVKRGDSVAVIG-CGGVGDAAIAGAALAGASKII 205 (358)
T ss_pred ceEEEehhheEECCCCCChhHhhhhcccchhhHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence 9999999999999999999999999999999999887888999999999998 699999999999999995 65
No 29
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=99.83 E-value=1.1e-19 Score=130.65 Aligned_cols=76 Identities=24% Similarity=0.181 Sum_probs=68.7
Q ss_pred CCceeEEEEeCCC-CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 43 ARSLATTVLADPS-FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 43 ~g~~~~~~~v~~~-~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
+|+|+||++++++ .++++|+++++++++.+.+...|+|+++ +....++|++|+|+| +|++|++++|+||++|++ |+
T Consensus 72 ~G~~aey~~v~~~~~~~~lP~~~~~~~aa~l~~~~~ta~~al-~~~~~~~g~~VlV~G-~G~vG~~~~~~ak~~G~~~Vi 149 (280)
T TIGR03366 72 SGGYAEHCHLPAGTAIVPVPDDLPDAVAAPAGCATATVMAAL-EAAGDLKGRRVLVVG-AGMLGLTAAAAAAAAGAARVV 149 (280)
T ss_pred cccceeeEEecCCCcEEECCCCCCHHHhhHhhhHHHHHHHHH-HhccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence 4899999999997 6999999999999999999999999998 445667999999998 599999999999999996 65
No 30
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=99.82 E-value=1.3e-19 Score=134.31 Aligned_cols=101 Identities=26% Similarity=0.282 Sum_probs=90.5
Q ss_pred CCCccCcceEEEE----------ccCCEEEEE-----------------------------------ccCCceeEEEEeC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGL-----------------------------------VAARSLATTVLAD 53 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~-----------------------------------~~~g~~~~~~~v~ 53 (121)
+|.++|||++|+| ++||+|+.. ..+|+|+||++++
T Consensus 63 ~p~i~G~E~~G~Vv~vG~~v~~~~~Gd~V~~~~~~~~c~~C~~c~~g~~~~c~~~~~~~~~~~~~g~~~~G~~aey~~v~ 142 (357)
T PLN02514 63 YPMVPGHEVVGEVVEVGSDVSKFTVGDIVGVGVIVGCCGECSPCKSDLEQYCNKRIWSYNDVYTDGKPTQGGFASAMVVD 142 (357)
T ss_pred CCccCCceeeEEEEEECCCcccccCCCEEEEcCccccCCCChhHhCCCcccCCCccccccccccCCccCCCccccEEEEc
Confidence 5789999999998 689999731 1248999999999
Q ss_pred CCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 54 PSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 54 ~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++.++++|+++++++++.+++++.|||+++.+....++|++++|+| +|++|++++|+||.+|++++
T Consensus 143 ~~~~~~iP~~~~~~~aa~l~~~~~ta~~al~~~~~~~~g~~vlV~G-~G~vG~~av~~Ak~~G~~vi 208 (357)
T PLN02514 143 QKFVVKIPEGMAPEQAAPLLCAGVTVYSPLSHFGLKQSGLRGGILG-LGGVGHMGVKIAKAMGHHVT 208 (357)
T ss_pred hHHeEECCCCCCHHHhhhhhhhHHHHHHHHHHcccCCCCCeEEEEc-ccHHHHHHHHHHHHCCCeEE
Confidence 9999999999999999999999999999997767778999999997 79999999999999999875
No 31
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.82 E-value=2.2e-19 Score=131.67 Aligned_cols=103 Identities=26% Similarity=0.348 Sum_probs=93.6
Q ss_pred CCCCCccCcceEEEE----------ccCCEEEEEc-------------------cCCceeEEEEeCCCCeEEcCCCCCHH
Q psy3430 17 AGQDCVLGLEFSGRD----------TKGRRVMGLV-------------------AARSLATTVLADPSFLWEVPAKWTLE 67 (121)
Q Consensus 17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~-------------------~~g~~~~~~~v~~~~~~~~p~~~~~~ 67 (121)
...|.++|||++|+| ++||+|+... .+|+|++|+.++++.++++|++++++
T Consensus 75 ~~~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~ 154 (350)
T cd08274 75 LSFPRIQGADIVGRVVAVGEGVDTARIGERVLVDPSIRDPPEDDPADIDYIGSERDGGFAEYTVVPAENAYPVNSPLSDV 154 (350)
T ss_pred CCCCcccCCcceEEEEEeCCCCCCCCCCCEEEEecCcCCCCccccccccccCCCCCccceEEEEecHHHceeCCCCCCHH
Confidence 346789999999998 5799998731 24899999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 68 EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 68 ~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++.+++++.|+|+++ +..++++|++|+|+|++|++|++++|+|+.+|++++
T Consensus 155 ~~a~l~~~~~ta~~~~-~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~vi 206 (350)
T cd08274 155 ELATFPCSYSTAENML-ERAGVGAGETVLVTGASGGVGSALVQLAKRRGAIVI 206 (350)
T ss_pred HHHhcccHHHHHHHHH-hhcCCCCCCEEEEEcCCcHHHHHHHHHHHhcCCEEE
Confidence 9999999999999998 778999999999999889999999999999999875
No 32
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=99.82 E-value=1.1e-19 Score=133.03 Aligned_cols=102 Identities=27% Similarity=0.295 Sum_probs=94.3
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc-cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV-AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRG 87 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~ 87 (121)
.|.++|||++|+| ++||+|++.. ..|+|+||+.++++.++++|+++++++++.++++..|+|+++.+..
T Consensus 63 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~~~~ 142 (341)
T cd08290 63 PPAVGGNEGVGEVVKVGSGVKSLKPGDWVIPLRPGLGTWRTHAVVPADDLIKVPNDVDPEQAATLSVNPCTAYRLLEDFV 142 (341)
T ss_pred CCCCCCcceEEEEEEeCCCCCCCCCCCEEEecCCCCccchheEeccHHHeEeCCCCCCHHHHHHhhccHHHHHHHHHhhc
Confidence 5678999999998 5899999875 3589999999999999999999999999999999999999998778
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++++++|||+|++|++|++++|+|+++|++++
T Consensus 143 ~~~~g~~vlI~g~~g~vg~~~~~~a~~~g~~v~ 175 (341)
T cd08290 143 KLQPGDWVIQNGANSAVGQAVIQLAKLLGIKTI 175 (341)
T ss_pred ccCCCCEEEEccchhHHHHHHHHHHHHcCCeEE
Confidence 899999999999999999999999999999875
No 33
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.82 E-value=2e-19 Score=129.71 Aligned_cols=102 Identities=30% Similarity=0.461 Sum_probs=94.5
Q ss_pred CCCccCcceEEEE--------ccCCEEEEEcc------CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHH
Q psy3430 19 QDCVLGLEFSGRD--------TKGRRVMGLVA------ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLI 84 (121)
Q Consensus 19 ~~~~~G~e~~G~V--------~~Gd~V~~~~~------~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~ 84 (121)
.|.++|+|++|+| ++||+|+++.. +|+|++|+.+++..++++|+++++++++.++.++.|||+++.
T Consensus 56 ~~~~~g~e~~G~v~~vG~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~ta~~~l~ 135 (320)
T cd08243 56 FPRVLGIEAVGEVEEAPGGTFTPGQRVATAMGGMGRTFDGSYAEYTLVPNEQVYAIDSDLSWAELAALPETYYTAWGSLF 135 (320)
T ss_pred CCccccceeEEEEEEecCCCCCCCCEEEEecCCCCCCCCcccceEEEcCHHHcEeCCCCCCHHHHHhcchHHHHHHHHHH
Confidence 3578999999998 68999998753 489999999999999999999999999999999999999998
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+..++++|++|+|+|++|++|++++|+|+.+|++|+
T Consensus 136 ~~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~ 171 (320)
T cd08243 136 RSLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVT 171 (320)
T ss_pred HhcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEE
Confidence 888899999999999999999999999999999876
No 34
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=99.81 E-value=4.1e-19 Score=129.03 Aligned_cols=101 Identities=36% Similarity=0.596 Sum_probs=94.1
Q ss_pred CCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCC
Q psy3430 20 DCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKM 89 (121)
Q Consensus 20 ~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~ 89 (121)
+.++|+|++|+| ++||+|+++..+|+|+||++++.+.++++|+++++++++.++.++.|+|+++.+..++
T Consensus 59 ~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~l~~~~~~ 138 (334)
T PTZ00354 59 SEILGLEVAGYVEDVGSDVKRFKEGDRVMALLPGGGYAEYAVAHKGHVMHIPQGYTFEEAAAIPEAFLTAWQLLKKHGDV 138 (334)
T ss_pred CcccceeeEEEEEEeCCCCCCCCCCCEEEEecCCCceeeEEEecHHHcEeCCCCCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 458999999998 5799999986678999999999999999999999999999999999999999888899
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++++|+|+|++|++|++++|+|+.+|++++
T Consensus 139 ~~~~~vlI~ga~g~~g~~~~~~a~~~g~~v~ 169 (334)
T PTZ00354 139 KKGQSVLIHAGASGVGTAAAQLAEKYGAATI 169 (334)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHcCCEEE
Confidence 9999999999999999999999999999764
No 35
>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.81 E-value=3e-19 Score=128.56 Aligned_cols=101 Identities=31% Similarity=0.432 Sum_probs=92.3
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK 88 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~ 88 (121)
.+.++|+|++|+| ++||+|+++..+|+|++|+.++.+.++++|+++++++++++++.+.|||+++.+...
T Consensus 51 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~a~~~~~~~~ta~~~~~~~~~ 130 (305)
T cd08270 51 DGAVPGWDAAGVVERAAADGSGPAVGARVVGLGAMGAWAELVAVPTGWLAVLPDGVSFAQAATLPVAGVTALRALRRGGP 130 (305)
T ss_pred CCCcccceeEEEEEEeCCCCCCCCCCCEEEEecCCcceeeEEEEchHHeEECCCCCCHHHHHHhHhHHHHHHHHHHHhCC
Confidence 3568999999998 579999998767999999999999999999999999999999999999999966665
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
. +|++++|+|+.|++|++++|+++.+|++|+
T Consensus 131 ~-~~~~vli~g~~~~~g~~~~~~a~~~g~~v~ 161 (305)
T cd08270 131 L-LGRRVLVTGASGGVGRFAVQLAALAGAHVV 161 (305)
T ss_pred C-CCCEEEEECCCcHHHHHHHHHHHHcCCEEE
Confidence 5 599999999889999999999999999875
No 36
>KOG1202|consensus
Probab=99.81 E-value=1.5e-20 Score=152.18 Aligned_cols=121 Identities=75% Similarity=1.283 Sum_probs=116.6
Q ss_pred CccCCCCCCCCCCCCCCCCCCccCcceEEEEccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHH
Q psy3430 1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAY 80 (121)
Q Consensus 1 ~~~~g~~~~~~~~~~~~~~~~~~G~e~~G~V~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~ 80 (121)
|+..|+++.+.+|++...-++.+|.|++|+-+-|.||.++.+.-++++-+.++.+.++.+|++.+.+||++.|+.+.|+|
T Consensus 1462 MLasGkL~~DAiPG~~a~qdclLGmEFsGRd~~GrRvM~mvpAksLATt~l~~rd~lWevP~~WTleeAstVP~VYsTaY 1541 (2376)
T KOG1202|consen 1462 MLASGKLSPDAIPGDLASQDCLLGMEFSGRDASGRRVMGMVPAKSLATTVLASRDFLWEVPSKWTLEEASTVPVVYSTAY 1541 (2376)
T ss_pred HHhcCCCCcccCCCccchhhheeceeeccccCCCcEEEEeeehhhhhhhhhcchhhhhhCCcccchhhcccCceEeeeeh
Confidence 67889999999999999999999999999999999999998888899999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 81 YSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 81 ~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
++|..++..++||+||||+++|++|++||.+|.+.|++|+.
T Consensus 1542 YALVvRG~mkkGekiLIHaGsGGVGQAAIaiALa~G~~VFT 1582 (2376)
T KOG1202|consen 1542 YALVVRGQMKKGEKILIHAGSGGVGQAAIAIALAHGCTVFT 1582 (2376)
T ss_pred hhhhhhccccCCcEEEEecCCCchhHHHHHHHHHcCCEEEE
Confidence 99999999999999999999999999999999999999873
No 37
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=99.80 E-value=6.2e-19 Score=128.08 Aligned_cols=102 Identities=22% Similarity=0.269 Sum_probs=90.1
Q ss_pred CCCccCcceEEEE--------ccCCEEEEEc------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHH
Q psy3430 19 QDCVLGLEFSGRD--------TKGRRVMGLV------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLI 84 (121)
Q Consensus 19 ~~~~~G~e~~G~V--------~~Gd~V~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~ 84 (121)
+|.++|||++|+| ++||+|+... .+|+|+||+.++++.++++|+++++++++.+++++.|++.++.
T Consensus 57 ~~~~~g~e~~G~V~~~~~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~ 136 (326)
T cd08289 57 YPFIPGIDLAGTVVESNDPRFKPGDEVIVTSYDLGVSHHGGYSEYARVPAEWVVPLPKGLTLKEAMILGTAGFTAALSIH 136 (326)
T ss_pred CCcCcccceeEEEEEcCCCCCCCCCEEEEcccccCCCCCCcceeEEEEcHHHeEECCCCCCHHHHhhhhhHHHHHHHHHH
Confidence 4789999999998 5799999874 3689999999999999999999999999999999999999885
Q ss_pred hhc--C-CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRG--K-MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~--~-~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
... . ...+++|+|+|++|++|++++|+|+.+|++|+
T Consensus 137 ~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~ 175 (326)
T cd08289 137 RLEENGLTPEQGPVLVTGATGGVGSLAVSILAKLGYEVV 175 (326)
T ss_pred HHHhcCCCCCCCEEEEEcCCchHHHHHHHHHHHCCCeEE
Confidence 433 2 34578999999999999999999999999876
No 38
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=99.80 E-value=3.4e-19 Score=129.73 Aligned_cols=98 Identities=18% Similarity=0.114 Sum_probs=81.9
Q ss_pred CCCCccCcceEEEE---------ccCCEEEEEc---------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHH
Q psy3430 18 GQDCVLGLEFSGRD---------TKGRRVMGLV---------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATA 79 (121)
Q Consensus 18 ~~~~~~G~e~~G~V---------~~Gd~V~~~~---------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta 79 (121)
.+|.++|||++|+| ++||||+... ..|+|+||++++++.++++|++++++. +.+ ....||
T Consensus 57 ~~P~i~GhE~~G~V~~vG~~v~~~vGdrV~~~~~~c~~~~~~~~G~~aey~~v~~~~~~~ip~~~~~~~-a~~-~~~~~a 134 (308)
T TIGR01202 57 GYPLVPGYESVGRVVEAGPDTGFRPGDRVFVPGSNCYEDVRGLFGGASKRLVTPASRVCRLDPALGPQG-ALL-ALAATA 134 (308)
T ss_pred CCCccCcceeEEEEEEecCCCCCCCCCEEEEeCccccccccccCCcccceEEcCHHHceeCCCCCCHHH-Hhh-hHHHHH
Confidence 46899999999998 6899998632 148999999999999999999999864 444 457899
Q ss_pred HHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 80 YYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 80 ~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
|+++.+ . ..++++++|+| +|++|++++|+||++|++++
T Consensus 135 ~~~~~~-~-~~~~~~vlV~G-~G~vG~~a~q~ak~~G~~~v 172 (308)
T TIGR01202 135 RHAVAG-A-EVKVLPDLIVG-HGTLGRLLARLTKAAGGSPP 172 (308)
T ss_pred HHHHHh-c-ccCCCcEEEEC-CCHHHHHHHHHHHHcCCceE
Confidence 999954 3 34689999998 79999999999999999743
No 39
>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically
Probab=99.80 E-value=6.9e-19 Score=131.12 Aligned_cols=102 Identities=24% Similarity=0.336 Sum_probs=92.2
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------------------------- 41 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------------------------- 41 (121)
.+|.++|||++|+| ++||+|+...
T Consensus 59 ~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~c~~c~~c~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (373)
T cd08299 59 PFPVILGHEAAGIVESVGEGVTTVKPGDKVIPLFVPQCGKCRACLNPESNLCLKNDLGKPQGLMQDGTSRFTCKGKPIHH 138 (373)
T ss_pred CCCccccccceEEEEEeCCCCccCCCCCEEEECCCCCCCCChhhhCCCcccCcCcccccccccccCCccccccCCccccc
Confidence 35779999999998 5899998651
Q ss_pred --cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-E
Q psy3430 42 --AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-T 118 (121)
Q Consensus 42 --~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~ 118 (121)
..|+|+||++++++.++++|+++++++++.+.+++.|+|+++.+..++++|++|+|+| +|++|++++|+|+.+|+ +
T Consensus 139 ~~~~G~~~e~~~v~~~~~~~lP~~l~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~VlV~G-~g~vG~~~~~~a~~~G~~~ 217 (373)
T cd08299 139 FLGTSTFSEYTVVDEIAVAKIDAAAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSAIMGCKAAGASR 217 (373)
T ss_pred ccCCCcccceEEecccceeeCCCCCChHHhheeccchHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCe
Confidence 2478999999999999999999999999999999999999987889999999999996 79999999999999999 6
Q ss_pred Ee
Q psy3430 119 VY 120 (121)
Q Consensus 119 vi 120 (121)
|+
T Consensus 218 Vi 219 (373)
T cd08299 218 II 219 (373)
T ss_pred EE
Confidence 76
No 40
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=99.80 E-value=6.2e-19 Score=130.08 Aligned_cols=101 Identities=25% Similarity=0.342 Sum_probs=90.2
Q ss_pred CCCCccCcceEEEE---------ccCCEEEEE---------------------------ccCCceeEEEEeCCCCeEEcC
Q psy3430 18 GQDCVLGLEFSGRD---------TKGRRVMGL---------------------------VAARSLATTVLADPSFLWEVP 61 (121)
Q Consensus 18 ~~~~~~G~e~~G~V---------~~Gd~V~~~---------------------------~~~g~~~~~~~v~~~~~~~~p 61 (121)
.+|.++|||++|+| .+||+|+.. ..+|+|+||++++++.++++|
T Consensus 52 ~~p~i~GhE~~G~V~~vG~~v~~~~GdrV~~~~~~~cg~c~~c~~g~~~~c~~~~~~g~~~~G~~ae~~~v~~~~~~~ip 131 (349)
T TIGR03201 52 ALPLALGHEISGRVIQAGAGAASWIGKAVIVPAVIPCGECELCKTGRGTICRAQKMPGNDMQGGFASHIVVPAKGLCVVD 131 (349)
T ss_pred CCCeeccccceEEEEEeCCCcCCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCccCcCCCCcccceEEechHHeEECC
Confidence 45789999999998 279999752 135899999999999999999
Q ss_pred C------CCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 62 A------KWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 62 ~------~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+ ++++++++.+.+++.|+|+++. ..++++|++|+|+|+ |++|++++|+|+++|++|+
T Consensus 132 ~~~~~~~~~~~~~~a~~~~~~~ta~~a~~-~~~~~~g~~VlV~G~-G~vG~~a~~~a~~~G~~vi 194 (349)
T TIGR03201 132 EARLAAAGLPLEHVSVVADAVTTPYQAAV-QAGLKKGDLVIVIGA-GGVGGYMVQTAKAMGAAVV 194 (349)
T ss_pred cccccccCCCHHHhhhhcchHHHHHHHHH-hcCCCCCCEEEEECC-CHHHHHHHHHHHHcCCeEE
Confidence 9 8999999999999999999994 578999999999997 9999999999999999876
No 41
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=99.80 E-value=9.8e-19 Score=130.74 Aligned_cols=100 Identities=30% Similarity=0.384 Sum_probs=91.1
Q ss_pred CccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEEcCC
Q psy3430 21 CVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWEVPA 62 (121)
Q Consensus 21 ~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~~p~ 62 (121)
.++|||++|+| ++||+|+.+. .+|+|+||+++++..++++|+
T Consensus 83 ~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~~g~~a~y~~v~~~~l~~iP~ 162 (393)
T cd08246 83 HIGGSDASGIVWAVGEGVKNWKVGDEVVVHCSVWDGNDPERAGGDPMFDPSQRIWGYETNYGSFAQFALVQATQLMPKPK 162 (393)
T ss_pred cccccceEEEEEEeCCCCCcCCCCCEEEEeccccccCcccccccccccccccccccccCCCCcceeEEEechHHeEECCC
Confidence 58999999998 5799998764 248999999999999999999
Q ss_pred CCCHHHHhhcchHHHHHHHHHHhh--cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 63 KWTLEEASTIPVVYATAYYSLIVR--GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 63 ~~~~~~aa~l~~~~~ta~~~l~~~--~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++++++++.+++++.|||+++... ++++++++|+|+|++|++|++++|+|+.+|++++
T Consensus 163 ~l~~~~aa~l~~~~~tA~~al~~~~~~~~~~g~~vlV~ga~g~iG~a~~~lak~~G~~vv 222 (393)
T cd08246 163 HLSWEEAAAYMLVGATAYRMLFGWNPNTVKPGDNVLIWGASGGLGSMAIQLARAAGANPV 222 (393)
T ss_pred CCCHHHHhhhcccHHHHHHHHhhcccccCCCCCEEEEECCCcHHHHHHHHHHHHcCCeEE
Confidence 999999999999999999998655 7899999999999889999999999999999865
No 42
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=99.80 E-value=1.6e-19 Score=131.34 Aligned_cols=116 Identities=26% Similarity=0.304 Sum_probs=99.1
Q ss_pred CCCCCCCCCCCC---CCCCCCccCcceEEEE----------ccCCEEEEEc-----------------------------
Q psy3430 4 SGKLPPDALPGD---LAGQDCVLGLEFSGRD----------TKGRRVMGLV----------------------------- 41 (121)
Q Consensus 4 ~g~~~~~~~~~~---~~~~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------- 41 (121)
.|.++.|....+ ...+|.++|||++|+| ++||+|+...
T Consensus 37 tGVCHTD~~~~~G~~p~~~P~vLGHEgAGiVe~VG~gVt~vkpGDhVI~~f~p~CG~C~~C~sGk~nlC~~~~~~~~kG~ 116 (366)
T COG1062 37 TGVCHTDAHTLSGDDPEGFPAVLGHEGAGIVEAVGEGVTSVKPGDHVILLFTPECGQCKFCLSGKPNLCEAIRATQGKGT 116 (366)
T ss_pred eeccccchhhhcCCCCCCCceecccccccEEEEecCCccccCCCCEEEEcccCCCCCCchhhCCCcccccchhhhccccc
Confidence 455555554432 1348999999999998 8999994321
Q ss_pred -------------------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCc
Q psy3430 42 -------------------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAG 102 (121)
Q Consensus 42 -------------------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g 102 (121)
..++|+||.++++.+++|++++.+++.++.+.|..+|.+.+..+.+++++|++|.|.| .|
T Consensus 117 m~dGttrls~~~~~~~h~lG~stFa~y~vv~~~s~vki~~~~p~~~a~llGCgV~TG~Gav~nta~v~~G~tvaV~G-lG 195 (366)
T COG1062 117 MPDGTTRLSGNGVPVYHYLGCSTFAEYTVVHEISLVKIDPDAPLEKACLLGCGVTTGIGAVVNTAKVEPGDTVAVFG-LG 195 (366)
T ss_pred ccCCceeeecCCcceeeeeccccchhheeecccceEECCCCCCccceEEEeeeeccChHHhhhcccCCCCCeEEEEe-cc
Confidence 0149999999999999999999999999999999999999999999999999999999 99
Q ss_pred hHHHHHHHHHHHCCC-EEe
Q psy3430 103 GLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 103 ~vG~~aiqla~~~G~-~vi 120 (121)
++|++++|-|+..|+ ++|
T Consensus 196 gVGlaaI~gA~~agA~~Ii 214 (366)
T COG1062 196 GVGLAAIQGAKAAGAGRII 214 (366)
T ss_pred HhHHHHHHHHHHcCCceEE
Confidence 999999999999999 554
No 43
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=99.80 E-value=1.6e-18 Score=122.03 Aligned_cols=102 Identities=32% Similarity=0.425 Sum_probs=92.9
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc-----------------------cCCceeEEEEeCCCCeEEcCCCC
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV-----------------------AARSLATTVLADPSFLWEVPAKW 64 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~-----------------------~~g~~~~~~~v~~~~~~~~p~~~ 64 (121)
.+|.++|+|++|+| ++||+|++.. .+|+|++|+.++.+.++++|+++
T Consensus 28 ~~~~~~G~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~ 107 (271)
T cd05188 28 KLPLILGHEGAGVVVEVGPGVTGVKVGDRVVVLPNLGCGTCELCRELCPGGGILGEGLDGGFAEYVVVPADNLVPLPDGL 107 (271)
T ss_pred CCCcccccccEEEEEEECCCCCcCCCCCEEEEcCCCCCCCCHHHHhhCCCCCEeccccCCcceEEEEechHHeEECCCCC
Confidence 35779999999998 6899999875 25899999999999999999999
Q ss_pred CHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 65 TLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 65 ~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++++++.++.++.|||+++.+...++++++|+|+|+++ +|++++|+++..|.+|+
T Consensus 108 ~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vli~g~~~-~G~~~~~~a~~~g~~v~ 162 (271)
T cd05188 108 SLEEAALLPEPLATAYHALRRAGVLKPGDTVLVLGAGG-VGLLAAQLAKAAGARVI 162 (271)
T ss_pred CHHHhhHhcCHHHHHHHHHHhccCCCCCCEEEEECCCH-HHHHHHHHHHHcCCeEE
Confidence 99999999999999999998888789999999999776 99999999999999876
No 44
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=99.79 E-value=2.2e-18 Score=124.90 Aligned_cols=102 Identities=23% Similarity=0.275 Sum_probs=90.1
Q ss_pred CCCccCcceEEEE--------ccCCEEEEEc------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHH
Q psy3430 19 QDCVLGLEFSGRD--------TKGRRVMGLV------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLI 84 (121)
Q Consensus 19 ~~~~~G~e~~G~V--------~~Gd~V~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~ 84 (121)
+|.++|||++|+| ++||+|++.. .+|+|+||++++++.++++|+++++++++.+++.+.|+|+++.
T Consensus 57 ~~~~~g~e~~G~v~~~~~~~~~~Gd~V~~~~~~~g~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~ 136 (325)
T cd05280 57 YPHTPGIDAAGTVVSSDDPRFREGDEVLVTGYDLGMNTDGGFAEYVRVPADWVVPLPEGLSLREAMILGTAGFTAALSVH 136 (325)
T ss_pred CCCccCcccEEEEEEeCCCCCCCCCEEEEcccccCCCCCceeEEEEEEchhhEEECCCCCCHHHHHhhHHHHHHHHHHHH
Confidence 4678999999997 5899999753 3689999999999999999999999999999999999999986
Q ss_pred hhcCC--C-CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKM--R-PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~--~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
...+. + .+++|+|+|++|++|++++|+|+.+|++|+
T Consensus 137 ~~~~~~~~~~~~~vlI~g~~g~vg~~~~~~a~~~g~~v~ 175 (325)
T cd05280 137 RLEDNGQTPEDGPVLVTGATGGVGSIAVAILAKLGYTVV 175 (325)
T ss_pred HHhhccCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEE
Confidence 55433 5 457999999999999999999999999876
No 45
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=99.79 E-value=1.4e-18 Score=127.23 Aligned_cols=101 Identities=28% Similarity=0.349 Sum_probs=90.6
Q ss_pred CCCCccCcceEEEE----------ccCCEEEE----------------------------EccCCceeEEEEeCCCCeEE
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMG----------------------------LVAARSLATTVLADPSFLWE 59 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~----------------------------~~~~g~~~~~~~v~~~~~~~ 59 (121)
.+|.++|||++|+| ++||+|+. +..+|+++||+.++++.+++
T Consensus 53 ~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~g~~~~c~~~~~~~~~~~g~~a~~~~v~~~~~~~ 132 (333)
T cd08296 53 SYPRVPGHEVVGRIDAVGEGVSRWKVGDRVGVGWHGGHCGTCDACRRGDFVHCENGKVTGVTRDGGYAEYMLAPAEALAR 132 (333)
T ss_pred CCCcccCcceeEEEEEECCCCccCCCCCEEEeccccCCCCCChhhhCcCcccCCCCCccCcccCCcceeEEEEchhheEe
Confidence 34679999999998 57999976 22358999999999999999
Q ss_pred cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|+++++++++.+++++.|+|+++.. .+++++++|+|+| +|++|++++|+|+++|++|+
T Consensus 133 lp~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~~~~vlV~g-~g~iG~~~~~~a~~~G~~vi 191 (333)
T cd08296 133 IPDDLDAAEAAPLLCAGVTTFNALRN-SGAKPGDLVAVQG-IGGLGHLAVQYAAKMGFRTV 191 (333)
T ss_pred CCCCCCHHHhhhhhhhhHHHHHHHHh-cCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEE
Confidence 99999999999999999999999954 4899999999999 89999999999999999876
No 46
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=99.79 E-value=2.3e-18 Score=124.71 Aligned_cols=102 Identities=33% Similarity=0.388 Sum_probs=92.2
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEcc--CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLVA--ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV 85 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~--~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~ 85 (121)
..|.++|+|++|+| ++||+|+++.. +|+|++|+.++.+.++++|+++++++++.+++.+.|+| ++.+
T Consensus 58 ~~p~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~a~~~~~~~~ta~-~~~~ 136 (324)
T cd08244 58 ELPYVPGGEVAGVVDAVGPGVDPAWLGRRVVAHTGRAGGGYAELAVADVDSLHPVPDGLDLEAAVAVVHDGRTAL-GLLD 136 (324)
T ss_pred CCCcCCccceEEEEEEeCCCCCCCCCCCEEEEccCCCCceeeEEEEEchHHeEeCCCCCCHHHHhhhcchHHHHH-HHHH
Confidence 34678999999998 57999998752 58999999999999999999999999999999999995 4557
Q ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 86 RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 86 ~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+++++++|+|+|++|++|++++|+|+.+|++|+
T Consensus 137 ~~~~~~~~~vlI~g~~~~~g~~~~~la~~~g~~v~ 171 (324)
T cd08244 137 LATLTPGDVVLVTAAAGGLGSLLVQLAKAAGATVV 171 (324)
T ss_pred hcCCCCCCEEEEEcCCchHHHHHHHHHHHCCCEEE
Confidence 88999999999999999999999999999999876
No 47
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=99.79 E-value=1.3e-18 Score=126.95 Aligned_cols=101 Identities=26% Similarity=0.249 Sum_probs=86.2
Q ss_pred CCCCccCcceEEEE-----------ccCCEEEEEcc-CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430 18 GQDCVLGLEFSGRD-----------TKGRRVMGLVA-ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV 85 (121)
Q Consensus 18 ~~~~~~G~e~~G~V-----------~~Gd~V~~~~~-~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~ 85 (121)
.+|.++|||++|+| ++||+|+++.. +|+|+||++++++.++++|+++++++++++++.+.|+|..+ +
T Consensus 59 ~~p~v~G~e~~G~V~~vG~~v~~~~~vGd~V~~~~~~~g~~a~~~~v~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~-~ 137 (324)
T cd08291 59 ALPVPPGFEGSGTVVAAGGGPLAQSLIGKRVAFLAGSYGTYAEYAVADAQQCLPLPDGVSFEQGASSFVNPLTALGML-E 137 (324)
T ss_pred CCCcCCCcceEEEEEEECCCccccCCCCCEEEecCCCCCcchheeeecHHHeEECCCCCCHHHHhhhcccHHHHHHHH-H
Confidence 35789999999997 37999998754 38999999999999999999999999998888999998655 5
Q ss_pred hcCCCCCCEEEEe-cCCchHHHHHHHHHHHCCCEEe
Q psy3430 86 RGKMRPGESLLVH-AGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 86 ~~~~~~g~~vli~-ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+. ++++++|+ +++|++|++++|+||.+|++|+
T Consensus 138 ~~~~-~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi 172 (324)
T cd08291 138 TARE-EGAKAVVHTAAASALGRMLVRLCKADGIKVI 172 (324)
T ss_pred hhcc-CCCcEEEEccCccHHHHHHHHHHHHcCCEEE
Confidence 5555 55566665 7899999999999999999876
No 48
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=99.79 E-value=1.9e-18 Score=125.15 Aligned_cols=102 Identities=25% Similarity=0.269 Sum_probs=94.4
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK 88 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~ 88 (121)
.|.++|+|++|+| ++||+|+++..+|+|++|+.++.+.++++|+++++++++.+++...|+|+++.+..+
T Consensus 56 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~~~a~~~~~~~ta~~~~~~~~~ 135 (323)
T cd05282 56 LPAVPGNEGVGVVVEVGSGVSGLLVGQRVLPLGGEGTWQEYVVAPADDLIPVPDSISDEQAAMLYINPLTAWLMLTEYLK 135 (323)
T ss_pred CCCcCCcceEEEEEEeCCCCCCCCCCCEEEEeCCCCcceeEEecCHHHeEECCCCCCHHHHHHHhccHHHHHHHHHHhcc
Confidence 4679999999998 579999998645899999999999999999999999999999999999999988888
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++++++|+|+|++|.+|++++|+|+++|++++
T Consensus 136 ~~~~~~vlI~g~~~~vg~~~~~~a~~~g~~v~ 167 (323)
T cd05282 136 LPPGDWVIQNAANSAVGRMLIQLAKLLGFKTI 167 (323)
T ss_pred CCCCCEEEEcccccHHHHHHHHHHHHCCCeEE
Confidence 99999999999999999999999999999876
No 49
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=99.79 E-value=2.7e-18 Score=126.85 Aligned_cols=102 Identities=28% Similarity=0.311 Sum_probs=90.3
Q ss_pred CCCCccCcceEEEE----------------ccCCEEEEEc----------------------------------cCCcee
Q psy3430 18 GQDCVLGLEFSGRD----------------TKGRRVMGLV----------------------------------AARSLA 47 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------------~~Gd~V~~~~----------------------------------~~g~~~ 47 (121)
.+|.++|||++|+| ++||+|+.+. ..|+|+
T Consensus 53 ~~p~~~G~e~~G~V~~vG~~v~~~~~~~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~c~~~~~~~~~~~~~~~~~~g~~a 132 (361)
T cd08231 53 PLPIILGHEGVGRVVALGGGVTTDVAGEPLKVGDRVTWSVGAPCGRCYRCLVGDPTKCENRKKYGHEASCDDPHLSGGYA 132 (361)
T ss_pred CCCcccccCCceEEEEeCCCccccccCCccCCCCEEEEcccCCCCCChhHhCcCccccccchhccccccccCCCCCcccc
Confidence 46789999999997 2599998762 248999
Q ss_pred EEEEeCCC-CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 48 TTVLADPS-FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 48 ~~~~v~~~-~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
||++++++ .++++|+++++++++.+++++.|||+++.+....++|++|||+| +|++|++++|+|+.+|+ +|+
T Consensus 133 ~~~~v~~~~~~~~lP~~~~~~~aa~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~~~~lak~~G~~~v~ 206 (361)
T cd08231 133 EHIYLPPGTAIVRVPDNVPDEVAAPANCALATVLAALDRAGPVGAGDTVVVQG-AGPLGLYAVAAAKLAGARRVI 206 (361)
T ss_pred eEEEecCCCceEECCCCCCHHHHHHhcCHHHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence 99999996 79999999999999998899999999997777777999999997 79999999999999999 775
No 50
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=99.79 E-value=1.7e-18 Score=126.62 Aligned_cols=102 Identities=25% Similarity=0.299 Sum_probs=91.0
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEc
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEV 60 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~ 60 (121)
.+|.++|+|++|+| ++||+|+++. .+|+|+||+.++++.++++
T Consensus 56 ~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~ 135 (340)
T cd05284 56 KLPFTLGHENAGWVEEVGSGVDGLKEGDPVVVHPPWGCGTCRYCRRGEENYCENARFPGIGTDGGFAEYLLVPSRRLVKL 135 (340)
T ss_pred CCCeecccceeEEEEEeCCCCCcCcCCCEEEEcCCCCCCCChHHhCcCcccCCCCcccCccCCCcceeeEEecHHHeEEC
Confidence 34689999999998 5799998763 2589999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhh-cCCCCCCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVR-GKMRPGESLLVHAGAGGLGQAAISIALHMG-CTVY 120 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~vli~ga~g~vG~~aiqla~~~G-~~vi 120 (121)
|+++++++++.++..+.|||+++.+. .+++++++|||+| ++++|++++|+|+.+| .+|+
T Consensus 136 P~~ls~~~aa~l~~~~~ta~~~l~~~~~~~~~~~~vlI~g-~~~vg~~~~~~a~~~g~~~v~ 196 (340)
T cd05284 136 PRGLDPVEAAPLADAGLTAYHAVKKALPYLDPGSTVVVIG-VGGLGHIAVQILRALTPATVI 196 (340)
T ss_pred CCCCCHHHhhhhcchHHHHHHHHHHhcccCCCCCEEEEEc-CcHHHHHHHHHHHHhCCCcEE
Confidence 99999999999999999999999766 5788999999999 6679999999999999 6775
No 51
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.79 E-value=2.3e-18 Score=126.27 Aligned_cols=103 Identities=29% Similarity=0.417 Sum_probs=93.5
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHH
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLI 84 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~ 84 (121)
..|.++|||++|+| ++||+|+++. ..|+|++|+.++++.++++|+++++++++.+++++.|+|+++.
T Consensus 72 ~~p~~~G~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~l~ 151 (350)
T cd08248 72 EFPLTLGRDCSGVVVDIGSGVKSFEIGDEVWGAVPPWSQGTHAEYVVVPENEVSKKPKNLSHEEAASLPYAGLTAWSALV 151 (350)
T ss_pred CCCeeecceeEEEEEecCCCcccCCCCCEEEEecCCCCCccceeEEEecHHHeecCCCCCCHHHHhhchhHHHHHHHHHH
Confidence 45779999999998 5799999875 2589999999999999999999999999999999999999997
Q ss_pred hhcCCCC----CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRP----GESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~----g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+..++++ |++|+|+|++|++|++++++|+.+|++|+
T Consensus 152 ~~~~~~~~~~~g~~vlI~g~~g~ig~~~~~~a~~~G~~v~ 191 (350)
T cd08248 152 NVGGLNPKNAAGKRVLILGGSGGVGTFAIQLLKAWGAHVT 191 (350)
T ss_pred HhccCCCccCCCCEEEEECCCChHHHHHHHHHHHCCCeEE
Confidence 7777764 99999999999999999999999999876
No 52
>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.79 E-value=3.1e-18 Score=124.52 Aligned_cols=102 Identities=32% Similarity=0.476 Sum_probs=95.1
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK 88 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~ 88 (121)
+|.++|+|++|+| ++||+|+++..+|+|++|+.++.+.++++|+++++++++.++.++.|+|+++.+..+
T Consensus 57 ~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~a~~~~~~~~ta~~~l~~~~~ 136 (331)
T cd08273 57 LPFTPGYDLVGRVDALGSGVTGFEVGDRVAALTRVGGNAEYINLDAKYLVPVPEGVDAAEAVCLVLNYVTAYQMLHRAAK 136 (331)
T ss_pred CCcccccceEEEEEEeCCCCccCCCCCEEEEeCCCcceeeEEEechHHeEECCCCCCHHHHHhhhhHHHHHHHHHHHhcC
Confidence 5778999999998 579999998766899999999999999999999999999999999999999988889
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++|++++|+|++|++|++++|+|+.+|++|+
T Consensus 137 ~~~g~~vlI~g~~g~ig~~~~~~a~~~g~~v~ 168 (331)
T cd08273 137 VLTGQRVLIHGASGGVGQALLELALLAGAEVY 168 (331)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHcCCEEE
Confidence 99999999999999999999999999999876
No 53
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=99.78 E-value=3.6e-18 Score=124.03 Aligned_cols=103 Identities=21% Similarity=0.328 Sum_probs=91.5
Q ss_pred CCCCccCcceEEEE--------ccCCEEEEEc------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430 18 GQDCVLGLEFSGRD--------TKGRRVMGLV------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL 83 (121)
Q Consensus 18 ~~~~~~G~e~~G~V--------~~Gd~V~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l 83 (121)
..|.++|||++|+| ++||+|+... .+|+|++|+.++++.++++|+++++++++.++..+.|++.++
T Consensus 55 ~~~~~~g~e~~G~V~~~~~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~~~~~~~~~iP~~~~~~~aa~~~~~~~ta~~~~ 134 (323)
T TIGR02823 55 SYPMIPGIDAAGTVVSSEDPRFREGDEVIVTGYGLGVSHDGGYSQYARVPADWLVPLPEGLSLREAMALGTAGFTAALSV 134 (323)
T ss_pred CCCccceeeeEEEEEecCCCCCCCCCEEEEccCCCCCCCCccceEEEEEchhheEECCCCCCHHHhhhhhhhHHHHHHHH
Confidence 34778999999998 5899999864 358999999999999999999999999999999999999887
Q ss_pred Hhh--cCCCCCC-EEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 84 IVR--GKMRPGE-SLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 84 ~~~--~~~~~g~-~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
... ..+++++ +|+|+|++|.+|++++|+|+++|++++
T Consensus 135 ~~~~~~~~~~~~~~vlI~g~~g~vg~~~~~la~~~G~~vi 174 (323)
T TIGR02823 135 MALERNGLTPEDGPVLVTGATGGVGSLAVAILSKLGYEVV 174 (323)
T ss_pred HHhhhcCCCCCCceEEEEcCCcHHHHHHHHHHHHcCCeEE
Confidence 544 3488998 999999889999999999999999875
No 54
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=99.78 E-value=2e-18 Score=129.70 Aligned_cols=101 Identities=23% Similarity=0.306 Sum_probs=85.1
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc-------------------------------------cCCceeEEE
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV-------------------------------------AARSLATTV 50 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~-------------------------------------~~g~~~~~~ 50 (121)
.+|.++|||++|+| ++||||.... .+|+|+||+
T Consensus 60 ~~p~i~GhE~~G~V~~vG~~V~~~~vGdrV~~~~~~~Cg~C~~C~~g~~~~C~~~~~~~~~~~~g~~~~~~~~G~~aey~ 139 (393)
T TIGR02819 60 PTGLVLGHEITGEVIEKGRDVEFIKIGDIVSVPFNIACGRCRNCKEGHTGVCLNVNPARAGAAYGYVDMGGWVGGQSEYV 139 (393)
T ss_pred CCCccccceeEEEEEEEcCccccccCCCEEEEecccCCCCChHHHCcCcccCcCCCCCCccceecccccCCCCCceEEEE
Confidence 35889999999998 7899996520 248999999
Q ss_pred EeCCC--CeEEcCCCCCH----HHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 51 LADPS--FLWEVPAKWTL----EEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 51 ~v~~~--~~~~~p~~~~~----~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++++. .++++|++++. .+++++..++.|+|+++ +..++++|++|+|.| +|++|++++|+|+.+|++++
T Consensus 140 ~v~~~~~~l~~vP~~~~~~~~~~~~a~l~~~~~ta~~a~-~~~~~~~g~~VlV~G-~G~iG~~aiqlAk~~Ga~~v 213 (393)
T TIGR02819 140 MVPYADFNLLKFPDRDQALEKIRDLTMLSDIFPTGYHGA-VTAGVGPGSTVYIAG-AGPVGLAAAASAQLLGAAVV 213 (393)
T ss_pred EechhhCceEECCCcccccccccceeeeccHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCceE
Confidence 99964 69999998753 34678888999999998 568899999999976 79999999999999999754
No 55
>KOG0022|consensus
Probab=99.78 E-value=1e-18 Score=126.05 Aligned_cols=102 Identities=22% Similarity=0.273 Sum_probs=93.2
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------------------------- 41 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------------------------- 41 (121)
.+|+++|||.+|+| ++||+|+.+.
T Consensus 60 ~fP~IlGHEaaGIVESvGegV~~vk~GD~Viplf~p~CgeCk~C~s~ktNlC~~~~~~~~~~~~~~DgtSRF~~~gk~iy 139 (375)
T KOG0022|consen 60 LFPVILGHEAAGIVESVGEGVTTVKPGDHVIPLFTPQCGECKFCKSPKTNLCEKFRADNGKGGMPYDGTSRFTCKGKPIY 139 (375)
T ss_pred cCceEecccceeEEEEecCCccccCCCCEEeeccccCCCCcccccCCCCChhhhhcccccccccccCCceeeeeCCCceE
Confidence 57999999999999 8999995432
Q ss_pred ---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-
Q psy3430 42 ---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC- 117 (121)
Q Consensus 42 ---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~- 117 (121)
.-.+|+||.++++..+.++++..+++.++.+.+...|+|.+..+.+++++|+++.|+| .|++|++++|-||+.||
T Consensus 140 Hfmg~StFsEYTVv~~~~v~kId~~aPl~kvcLLgCGvsTG~GAa~~~Akv~~GstvAVfG-LG~VGLav~~Gaka~GAs 218 (375)
T KOG0022|consen 140 HFMGTSTFSEYTVVDDISVAKIDPSAPLEKVCLLGCGVSTGYGAAWNTAKVEPGSTVAVFG-LGGVGLAVAMGAKAAGAS 218 (375)
T ss_pred EecccccceeEEEeecceeEecCCCCChhheeEeeccccccchhhhhhcccCCCCEEEEEe-cchHHHHHHHhHHhcCcc
Confidence 0148999999999999999999999999999999999999998999999999999999 99999999999999999
Q ss_pred EEe
Q psy3430 118 TVY 120 (121)
Q Consensus 118 ~vi 120 (121)
++|
T Consensus 219 rII 221 (375)
T KOG0022|consen 219 RII 221 (375)
T ss_pred cEE
Confidence 665
No 56
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=99.78 E-value=2.4e-18 Score=125.12 Aligned_cols=101 Identities=30% Similarity=0.448 Sum_probs=91.7
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEVP 61 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~p 61 (121)
+|.++|||++|+| ++||+|+.+. ..|+|++|++++++.++++|
T Consensus 54 ~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~p 133 (325)
T cd08264 54 MPHIPGAEFAGVVEEVGDHVKGVKKGDRVVVYNRVFDGTCDMCLSGNEMLCRNGGIIGVVSNGGYAEYIVVPEKNLFKIP 133 (325)
T ss_pred CCeecccceeEEEEEECCCCCCCCCCCEEEECCCcCCCCChhhcCCCccccCccceeeccCCCceeeEEEcCHHHceeCC
Confidence 4668999999998 5899998652 35899999999999999999
Q ss_pred CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++++++++.+++++.|+|+++. ..++++|++|+|+|++|++|++++++|+++|++|+
T Consensus 134 ~~~~~~~~~~~~~~~~~a~~~l~-~~~~~~g~~vlI~g~~g~vg~~~~~~a~~~G~~v~ 191 (325)
T cd08264 134 DSISDELAASLPVAALTAYHALK-TAGLGPGETVVVFGASGNTGIFAVQLAKMMGAEVI 191 (325)
T ss_pred CCCCHHHhhhhhhhhHHHHHHHH-hcCCCCCCEEEEECCCchHHHHHHHHHHHcCCeEE
Confidence 99999999999999999999995 48999999999999889999999999999999876
No 57
>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall
Probab=99.78 E-value=3.8e-18 Score=126.67 Aligned_cols=100 Identities=23% Similarity=0.318 Sum_probs=90.3
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc----------------------------------------------
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------------------------- 41 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------------------------- 41 (121)
.+|.++|||++|+| ++||+|+...
T Consensus 52 ~~~~i~g~e~~G~V~~vG~~v~~~~~Gd~Vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 131 (365)
T cd05279 52 PLPVILGHEGAGIVESIGPGVTTLKPGDKVIPLFGPQCGKCKQCLNPRPNLCSKSRGTNGRGLMSDGTSRFTCKGKPIHH 131 (365)
T ss_pred CCCcccccceeEEEEEeCCCcccCCCCCEEEEcCCCCCCCChhhcCCCcccCCCcccccccccccCCcceeeccCCcccc
Confidence 35679999999998 5799998752
Q ss_pred --cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430 42 --AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT 118 (121)
Q Consensus 42 --~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~ 118 (121)
..|+|+||+.+++..++++|+++++++++.+.+++.|+|+++.+..++++|++|+|+| +|++|++++|+|+.+|++
T Consensus 132 ~~~~g~~a~~~~v~~~~~~~lP~~~~~~~a~~~~~~~~ta~~al~~~~~~~~g~~vlI~g-~g~vG~~a~~~a~~~G~~ 209 (365)
T cd05279 132 FLGTSTFAEYTVVSEISLAKIDPDAPLEKVCLIGCGFSTGYGAAVNTAKVTPGSTCAVFG-LGGVGLSVIMGCKAAGAS 209 (365)
T ss_pred ccccccccceEEecCCceEECCCCCCHHHhhHhccchhHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 1268999999999999999999999999999999999999988889999999999996 799999999999999985
No 58
>cd08251 polyketide_synthase polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a
Probab=99.78 E-value=4.5e-18 Score=121.53 Aligned_cols=102 Identities=28% Similarity=0.417 Sum_probs=93.7
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc--cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV--AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV 85 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~--~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~ 85 (121)
.+|.++|+|++|+| ++||+|+++. .+|+|++|++++++.++++|+++++++++.++.++.|+|+++ +
T Consensus 36 ~~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~aa~~~~~~~ta~~~l-~ 114 (303)
T cd08251 36 PYPFTPGFEASGVVRAVGPHVTRLAVGDEVIAGTGESMGGHATLVTVPEDQVVRKPASLSFEEACALPVVFLTVIDAF-A 114 (303)
T ss_pred CCCCCcCceeeEEEEEECCCCCCCCCCCEEEEecCCCCcceeeEEEccHHHeEECCCCCCHHHHHHhHHHHHHHHHHH-H
Confidence 35779999999998 5799999874 358999999999999999999999999999999999999998 6
Q ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 86 RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 86 ~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..++++|++++|+++++++|++++|+++++|++++
T Consensus 115 ~~~~~~g~~vli~~~~~~~g~~~~~~a~~~g~~v~ 149 (303)
T cd08251 115 RAGLAKGEHILIQTATGGTGLMAVQLARLKGAEIY 149 (303)
T ss_pred hcCCCCCCEEEEecCCcHHHHHHHHHHHHcCCEEE
Confidence 88999999999999999999999999999999876
No 59
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=99.78 E-value=4.9e-18 Score=123.27 Aligned_cols=101 Identities=28% Similarity=0.356 Sum_probs=92.6
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEVP 61 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~p 61 (121)
.|.++|+|++|+| ++||+|+++. ..|+|++|++++...++++|
T Consensus 54 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip 133 (332)
T cd08259 54 YPLILGHEIVGTVEEVGEGVERFKPGDRVILYYYIPCGKCEYCLSGEENLCRNRAEYGEEVDGGFAEYVKVPERSLVKLP 133 (332)
T ss_pred CCeeccccceEEEEEECCCCccCCCCCEEEECCCCCCcCChhhhCCCcccCCCccccccccCCeeeeEEEechhheEECC
Confidence 4578999999998 5799999874 15899999999999999999
Q ss_pred CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++++++++.+++++.|||+++.. .+++++++++|+|++|++|++++++++..|++|+
T Consensus 134 ~~~~~~~~~~~~~~~~ta~~~l~~-~~~~~~~~vlI~ga~g~vG~~~~~~a~~~g~~v~ 191 (332)
T cd08259 134 DNVSDESAALAACVVGTAVHALKR-AGVKKGDTVLVTGAGGGVGIHAIQLAKALGARVI 191 (332)
T ss_pred CCCCHHHHhhhccHHHHHHHHHHH-hCCCCCCEEEEECCCCHHHHHHHHHHHHcCCeEE
Confidence 999999999999999999999966 8999999999999999999999999999999875
No 60
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=99.78 E-value=3.8e-18 Score=125.65 Aligned_cols=99 Identities=28% Similarity=0.393 Sum_probs=88.1
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEEc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWEV 60 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~~ 60 (121)
+|.++|+|++|+| ++||+|+... .+|+|+||+.+++..++++
T Consensus 64 ~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~~~~~~~~~~~~l 143 (351)
T cd08233 64 APVTLGHEFSGVVVEVGSGVTGFKVGDRVVVEPTIKCGTCGACKRGLYNLCDSLGFIGLGGGGGGFAEYVVVPAYHVHKL 143 (351)
T ss_pred CCceecccceEEEEEeCCCCCCCCCCCEEEECCCCCCCCChHHhCcCcccCCCCceeccCCCCCceeeEEEechHHeEEC
Confidence 5789999999998 6899998621 1589999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
|+++++++++.+ .+..|||+++ +..++++|++|+|+| +|++|++++|+|+.+|+ +|+
T Consensus 144 P~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~g~~vlI~g-~g~vG~~a~q~a~~~G~~~v~ 201 (351)
T cd08233 144 PDNVPLEEAALV-EPLAVAWHAV-RRSGFKPGDTALVLG-AGPIGLLTILALKAAGASKII 201 (351)
T ss_pred cCCCCHHHhhhc-cHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence 999999988765 6888999999 788999999999998 69999999999999999 665
No 61
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=99.78 E-value=3.3e-18 Score=125.92 Aligned_cols=98 Identities=21% Similarity=0.298 Sum_probs=85.4
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEc
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEV 60 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~ 60 (121)
..|.++|||++|+| ++||+|+.+. .+|+|+||++++++.++++
T Consensus 52 ~~p~i~G~e~~G~V~~vG~~v~~~~vGd~V~~~~~~~c~~c~~c~~g~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~l 131 (347)
T PRK10309 52 YYPITLGHEFSGYVEAVGSGVDDLHPGDAVACVPLLPCFTCPECLRGFYSLCAKYDFIGSRRDGGNAEYIVVKRKNLFAL 131 (347)
T ss_pred CCCcccccceEEEEEEeCCCCCCCCCCCEEEECCCcCCCCCcchhCcCcccCCCcceeccCCCCccceeEEeehHHeEEC
Confidence 35789999999998 6899998752 2589999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT 118 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~ 118 (121)
|+++++++++.+. +..++++++ +..++++|++|+|+| +|++|++++|+|+.+|++
T Consensus 132 P~~~s~~~aa~~~-~~~~~~~~~-~~~~~~~g~~vlV~G-~g~vG~~~~~~a~~~G~~ 186 (347)
T PRK10309 132 PTDMPIEDGAFIE-PITVGLHAF-HLAQGCEGKNVIIIG-AGTIGLLAIQCAVALGAK 186 (347)
T ss_pred cCCCCHHHhhhhh-HHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 9999999987663 556688886 677899999999997 699999999999999996
No 62
>cd05195 enoyl_red enoyl reductase of polyketide synthase. Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase
Probab=99.77 E-value=6e-18 Score=119.60 Aligned_cols=101 Identities=47% Similarity=0.781 Sum_probs=93.9
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK 88 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~ 88 (121)
+|.++|+|++|+| ++||+|+++. +|+|+||+.++.+.++++|+++++.+++.++++..|++.++.+..+
T Consensus 27 ~~~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~ 105 (293)
T cd05195 27 DETPLGLECSGIVTRVGSGVTGLKVGDRVMGLA-PGAFATHVRVDARLVVKIPDSLSFEEAATLPVAYLTAYYALVDLAR 105 (293)
T ss_pred CCCccceeeeEEEEeecCCccCCCCCCEEEEEe-cCcccceEEechhheEeCCCCCCHHHHhhchHHHHHHHHHHHHHhc
Confidence 5779999999997 5799999875 4889999999999999999999999999999999999999988889
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++|++|+|+|+.|++|++++|+++.+|++++
T Consensus 106 ~~~g~~vlv~g~~g~~g~~~~~~a~~~g~~v~ 137 (293)
T cd05195 106 LQKGESVLIHAAAGGVGQAAIQLAQHLGAEVF 137 (293)
T ss_pred cCCCCEEEEecCCCHHHHHHHHHHHHcCCEEE
Confidence 99999999999999999999999999999876
No 63
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=99.77 E-value=6.5e-18 Score=119.48 Aligned_cols=100 Identities=49% Similarity=0.809 Sum_probs=93.2
Q ss_pred CCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCC
Q psy3430 20 DCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKM 89 (121)
Q Consensus 20 ~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~ 89 (121)
|.++|+|++|+| ++||+|+++.. |+|+||+.++.+.++++|+++++++++.+.++..|++.++.+..++
T Consensus 24 ~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~-g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 102 (288)
T smart00829 24 EAVLGGECAGVVTRVGPGVTGLAVGDRVMGLAP-GSFATYVRTDARLVVPIPDGLSFEEAATVPVVFLTAYYALVDLARL 102 (288)
T ss_pred CCCCCceeEEEEEeeCCCCcCCCCCCEEEEEcC-CceeeEEEccHHHeEECCCCCCHHHHHhchHHHHHHHHHHHHHhCC
Confidence 578999999998 58999998754 8899999999999999999999999999999999999998788899
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++|++|+|+|+.|++|++++|+++.+|++|+
T Consensus 103 ~~g~~vlv~g~~~~~g~~~~~~a~~~g~~v~ 133 (288)
T smart00829 103 RPGESVLIHAAAGGVGQAAIQLAQHLGAEVF 133 (288)
T ss_pred CCCCEEEEecCCcHHHHHHHHHHHHcCCEEE
Confidence 9999999999999999999999999999876
No 64
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=99.77 E-value=4.3e-18 Score=122.12 Aligned_cols=102 Identities=37% Similarity=0.585 Sum_probs=95.0
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK 88 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~ 88 (121)
.|.++|+|++|+| ++||+|+++..+|+|++|+.++++.++++|+++++.+++.++.++.++|+++.+..+
T Consensus 57 ~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~l~~~~~~a~~~~~~~~~ 136 (323)
T cd05276 57 ASDILGLEVAGVVVAVGPGVTGWKVGDRVCALLAGGGYAEYVVVPAGQLLPVPEGLSLVEAAALPEVFFTAWQNLFQLGG 136 (323)
T ss_pred CCCcccceeEEEEEeeCCCCCCCCCCCEEEEecCCCceeEEEEcCHHHhccCCCCCCHHHHhhchhHHHHHHHHHHHhcC
Confidence 4678999999997 579999998777899999999999999999999999999999999999999988889
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++++++++|+|+++++|++++++++..|++++
T Consensus 137 ~~~~~~vlv~g~~~~ig~~~~~~~~~~g~~v~ 168 (323)
T cd05276 137 LKAGETVLIHGGASGVGTAAIQLAKALGARVI 168 (323)
T ss_pred CCCCCEEEEEcCcChHHHHHHHHHHHcCCEEE
Confidence 99999999999999999999999999999875
No 65
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=99.77 E-value=5e-18 Score=123.56 Aligned_cols=102 Identities=26% Similarity=0.294 Sum_probs=93.0
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc-cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV-AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRG 87 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~-~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~ 87 (121)
.|.++|+|++|+| ++||+|+... ..|+|++|+.++.+.++++|+++++++++.++..+.|+|.++.+..
T Consensus 57 ~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~g~~~~~v~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~l~~~~ 136 (327)
T PRK10754 57 LPSGLGTEAAGVVSKVGSGVKHIKVGDRVVYAQSALGAYSSVHNVPADKAAILPDAISFEQAAASFLKGLTVYYLLRKTY 136 (327)
T ss_pred CCCccCcceEEEEEEeCCCCCCCCCCCEEEECCCCCcceeeEEEcCHHHceeCCCCCCHHHHHHHHHHHHHHHHHHHhhc
Confidence 4668999999998 5799998653 3589999999999999999999999999999999999999998888
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++++|++++|+|+.|.+|++++|+||.+|++++
T Consensus 137 ~~~~g~~vlI~g~~g~ig~~~~~lak~~G~~v~ 169 (327)
T PRK10754 137 EIKPDEQFLFHAAAGGVGLIACQWAKALGAKLI 169 (327)
T ss_pred CCCCCCEEEEEeCCcHHHHHHHHHHHHcCCEEE
Confidence 999999999999999999999999999999875
No 66
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=99.77 E-value=6.6e-18 Score=125.35 Aligned_cols=102 Identities=28% Similarity=0.286 Sum_probs=91.1
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEE-----------------------------------------------
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGL----------------------------------------------- 40 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~----------------------------------------------- 40 (121)
.+|.++|+|++|+| ++||+|+..
T Consensus 54 ~~p~v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (365)
T cd08278 54 PLPAVLGHEGAGVVEAVGSAVTGLKPGDHVVLSFASCGECANCLSGHPAYCENFFPLNFSGRRPDGSTPLSLDDGTPVHG 133 (365)
T ss_pred CCCcccccceeEEEEEeCCCcccCCCCCEEEEcccCCCCChHHhCCCcccccCcccccccccccCCcccccccCCccccc
Confidence 35779999999998 689999841
Q ss_pred --ccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430 41 --VAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT 118 (121)
Q Consensus 41 --~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~ 118 (121)
...|+|+||+.++++.++++|+++++++++.+++++.||+.++.+..+++++++|+|+| +|++|++++|+|+++|++
T Consensus 134 ~~~~~g~~~~y~~v~~~~~~~iP~~~s~~~a~~l~~~~~ta~~~~~~~~~~~~g~~vlI~g-~g~vG~~~~~la~~~G~~ 212 (365)
T cd08278 134 HFFGQSSFATYAVVHERNVVKVDKDVPLELLAPLGCGIQTGAGAVLNVLKPRPGSSIAVFG-AGAVGLAAVMAAKIAGCT 212 (365)
T ss_pred ccccccceeeEEEecchhEEECCCCCCHHHhhhhcchhhhhhHHHhhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 12378999999999999999999999999999999999999988888999999999997 699999999999999994
Q ss_pred -Ee
Q psy3430 119 -VY 120 (121)
Q Consensus 119 -vi 120 (121)
++
T Consensus 213 ~v~ 215 (365)
T cd08278 213 TII 215 (365)
T ss_pred eEE
Confidence 54
No 67
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=99.77 E-value=4.1e-18 Score=125.15 Aligned_cols=102 Identities=30% Similarity=0.493 Sum_probs=92.7
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEcc--------CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHH
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVA--------ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAY 80 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~--------~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~ 80 (121)
.+.++|+|++|+| ++||+|+++.. +|+|++|++++.+.++++|+++++++++.+++.+.|+|
T Consensus 54 ~~~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~ 133 (339)
T cd08249 54 YPAILGCDFAGTVVEVGSGVTRFKVGDRVAGFVHGGNPNDPRNGAFQEYVVADADLTAKIPDNISFEEAATLPVGLVTAA 133 (339)
T ss_pred CCceeeeeeeEEEEEeCCCcCcCCCCCEEEEEeccccCCCCCCCcccceEEechhheEECCCCCCHHHceecchHHHHHH
Confidence 4678999999998 57999998854 48999999999999999999999999999999999999
Q ss_pred HHHHhhcCC----------CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 81 YSLIVRGKM----------RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 81 ~~l~~~~~~----------~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++.+..++ +++++++|+|++|++|++++|+|+.+|++|+
T Consensus 134 ~~l~~~~~~~~~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~a~~~G~~v~ 183 (339)
T cd08249 134 LALFQKLGLPLPPPKPSPASKGKPVLIWGGSSSVGTLAIQLAKLAGYKVI 183 (339)
T ss_pred HHHhccccCCCCCCCCCCCCCCCEEEEEcChhHHHHHHHHHHHHcCCeEE
Confidence 998766655 7999999999999999999999999999876
No 68
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=99.76 E-value=1e-17 Score=119.49 Aligned_cols=97 Identities=26% Similarity=0.260 Sum_probs=88.1
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhc
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRG 87 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~ 87 (121)
++|.++|+|++|+| ++||+|+.+ ++|++|++++.+.++++|+++++++++.+ .++.|+|+++ +..
T Consensus 19 ~~p~v~g~e~~G~V~~vG~~v~~~~~Gd~V~~~---~~~~~~~~v~~~~~~~ip~~l~~~~aa~~-~~~~ta~~~~-~~~ 93 (277)
T cd08255 19 PLPLPPGYSSVGRVVEVGSGVTGFKPGDRVFCF---GPHAERVVVPANLLVPLPDGLPPERAALT-ALAATALNGV-RDA 93 (277)
T ss_pred cCCcccCcceeEEEEEeCCCCCCCCCCCEEEec---CCcceEEEcCHHHeeECcCCCCHHHhHHH-HHHHHHHHHH-Hhc
Confidence 36789999999998 579999987 46999999999999999999999998888 8899999998 578
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
+++++++++|+| +|++|++++|+|+.+|++ |+
T Consensus 94 ~~~~g~~vlI~g-~g~vg~~~i~~a~~~g~~~vi 126 (277)
T cd08255 94 EPRLGERVAVVG-LGLVGLLAAQLAKAAGAREVV 126 (277)
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcEE
Confidence 999999999997 799999999999999997 65
No 69
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=99.76 E-value=9.5e-18 Score=123.10 Aligned_cols=101 Identities=31% Similarity=0.450 Sum_probs=91.5
Q ss_pred CCCccCcceEEEE----------ccCCEEEE---------------------------EccCCceeEEEEeCCC--CeEE
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMG---------------------------LVAARSLATTVLADPS--FLWE 59 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~---------------------------~~~~g~~~~~~~v~~~--~~~~ 59 (121)
+|.++|+|++|+| ++||+|++ +..+|+|++|+.+++. .+++
T Consensus 54 ~~~~~g~e~~G~V~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~ 133 (345)
T cd08260 54 LPHVPGHEFAGVVVEVGEDVSRWRVGDRVTVPFVLGCGTCPYCRAGDSNVCEHQVQPGFTHPGSFAEYVAVPRADVNLVR 133 (345)
T ss_pred CCeeeccceeEEEEEECCCCccCCCCCEEEECCCCCCCCCccccCcCcccCCCCcccccCCCCcceeEEEcccccCceEE
Confidence 4678999999998 58999986 3336899999999974 8999
Q ss_pred cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|+++++++++.++.++.|||+++.+..+++++++|+|+| +|++|++++|+|+.+|++|+
T Consensus 134 iP~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~~~~vlV~g-~g~vg~~~~~~a~~~G~~vi 193 (345)
T cd08260 134 LPDDVDFVTAAGLGCRFATAFRALVHQARVKPGEWVAVHG-CGGVGLSAVMIASALGARVI 193 (345)
T ss_pred CCCCCCHHHhhhhccchHHHHHHHHHccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 9999999999999999999999998888999999999999 79999999999999999876
No 70
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=99.76 E-value=9.5e-18 Score=122.41 Aligned_cols=102 Identities=29% Similarity=0.402 Sum_probs=92.4
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEc
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEV 60 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~ 60 (121)
++|.++|+|++|+| ++||+|++.. .+|+|++|+.++.+.++++
T Consensus 53 ~~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 132 (334)
T PRK13771 53 KYPVILGHEVVGTVEEVGENVKGFKPGDRVASLLYAPDGTCEYCRSGEEAYCKNRLGYGEELDGFFAEYAKVKVTSLVKV 132 (334)
T ss_pred CCCeeccccceEEEEEeCCCCccCCCCCEEEECCCCCCcCChhhcCCCcccCccccccccccCceeeeeeecchhceEEC
Confidence 34678999999998 5799998864 1589999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
|+++++.+++.+.+.+.|+|+++.+. +++++++|+|+|++|.+|++++|+|+.+|++++
T Consensus 133 p~~~~~~~~a~l~~~~~~a~~~~~~~-~~~~~~~vlI~g~~g~~g~~~~~la~~~g~~vi 191 (334)
T PRK13771 133 PPNVSDEGAVIVPCVTGMVYRGLRRA-GVKKGETVLVTGAGGGVGIHAIQVAKALGAKVI 191 (334)
T ss_pred CCCCCHHHhhcccchHHHHHHHHHhc-CCCCCCEEEEECCCccHHHHHHHHHHHcCCEEE
Confidence 99999999999999999999999665 899999999999889999999999999999876
No 71
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=99.76 E-value=5.4e-18 Score=125.29 Aligned_cols=99 Identities=23% Similarity=0.231 Sum_probs=80.0
Q ss_pred CCCccCcceEEEE---------ccCCEEEEEc------------------------------cCCceeEEEEeCCCCeEE
Q psy3430 19 QDCVLGLEFSGRD---------TKGRRVMGLV------------------------------AARSLATTVLADPSFLWE 59 (121)
Q Consensus 19 ~~~~~G~e~~G~V---------~~Gd~V~~~~------------------------------~~g~~~~~~~v~~~~~~~ 59 (121)
+|.++|||++|+| ++||+|+... .+|+|+||++++++.+++
T Consensus 57 ~p~i~G~e~~G~V~~vG~~~~~~vGdrV~~~~~~~cg~C~~c~~g~~~~c~~~~~~~~g~~~~~G~~aey~~~~~~~~~~ 136 (355)
T cd08230 57 DFLVLGHEALGVVEEVGDGSGLSPGDLVVPTVRRPPGKCLNCRIGRPDFCETGEYTERGIKGLHGFMREYFVDDPEYLVK 136 (355)
T ss_pred CCeeeccccceEEEEecCCCCCCCCCEEEeccccCCCcChhhhCcCcccCCCcceeccCcCCCCccceeEEEeccccEEE
Confidence 4689999999999 5899997642 248899999999999999
Q ss_pred cCCCCCHHHHhhcchHHHHHHHHHHh------hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 60 VPAKWTLEEASTIPVVYATAYYSLIV------RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 60 ~p~~~~~~~aa~l~~~~~ta~~~l~~------~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++++ +++++..++.+++.++.. ..++++|++|+|+| +|++|++++|+||++|++|+
T Consensus 137 ~P~~~~--~~a~~~~p~~~~~~a~~~~~~~~~~~~~~~g~~vlI~G-~G~vG~~a~q~ak~~G~~vi 200 (355)
T cd08230 137 VPPSLA--DVGVLLEPLSVVEKAIEQAEAVQKRLPTWNPRRALVLG-AGPIGLLAALLLRLRGFEVY 200 (355)
T ss_pred CCCCCC--cceeecchHHHHHHHHHHHhhhhhhcccCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 999999 444555666665554422 23367899999998 69999999999999999876
No 72
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=99.76 E-value=1.4e-17 Score=119.79 Aligned_cols=103 Identities=28% Similarity=0.376 Sum_probs=94.9
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc-----cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHH
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV-----AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYS 82 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~-----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~ 82 (121)
..|.++|||++|+| ++||+|+.+. ..|++++|+.++++.++++|+++++++++.+++++.|+|+.
T Consensus 56 ~~~~~~g~e~~G~v~~~g~~~~~~~~Gd~v~~~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~aa~~~~~~~~a~~~ 135 (325)
T cd08253 56 PLPYVPGSDGAGVVEAVGEGVDGLKVGDRVWLTNLGWGRRQGTAAEYVVVPADQLVPLPDGVSFEQGAALGIPALTAYRA 135 (325)
T ss_pred CCCeecccceEEEEEeeCCCCCCCCCCCEEEEeccccCCCCcceeeEEEecHHHcEeCCCCCCHHHHhhhhhHHHHHHHH
Confidence 45778999999998 5799999875 35899999999999999999999999999999999999999
Q ss_pred HHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 83 LIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 83 l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.+..++++|++++|+|+++++|++++++++.+|++|+
T Consensus 136 l~~~~~~~~g~~vlI~g~~~~~g~~~~~~a~~~g~~v~ 173 (325)
T cd08253 136 LFHRAGAKAGETVLVHGGSGAVGHAAVQLARWAGARVI 173 (325)
T ss_pred HHHHhCCCCCCEEEEEcCCchHHHHHHHHHHHcCCEEE
Confidence 98889999999999999999999999999999999876
No 73
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=99.76 E-value=9.4e-18 Score=122.12 Aligned_cols=100 Identities=30% Similarity=0.332 Sum_probs=90.1
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhc
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRG 87 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~ 87 (121)
.+|.++|+|++|+| ++||+|+++. .|+|++|+.++.+.++++|++ +.+++.++.++.|+|+++.+..
T Consensus 59 ~~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~-~g~~~s~~~v~~~~~~~ip~~--~~~~a~l~~~~~ta~~~l~~~~ 135 (329)
T cd08250 59 KPPFDCGFEGVGEVVAVGEGVTDFKVGDAVATMS-FGAFAEYQVVPARHAVPVPEL--KPEVLPLLVSGLTASIALEEVG 135 (329)
T ss_pred CCCcccCceeEEEEEEECCCCCCCCCCCEEEEec-CcceeEEEEechHHeEECCCC--cchhhhcccHHHHHHHHHHHhc
Confidence 45779999999998 4799999875 388999999999999999997 3467789999999999998888
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++++++++|+|++|.+|++++|+|+.+|++|+
T Consensus 136 ~~~~~~~vlI~ga~g~ig~~~~~~a~~~g~~v~ 168 (329)
T cd08250 136 EMKSGETVLVTAAAGGTGQFAVQLAKLAGCHVI 168 (329)
T ss_pred CCCCCCEEEEEeCccHHHHHHHHHHHHcCCeEE
Confidence 999999999999999999999999999999875
No 74
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=99.76 E-value=9.8e-18 Score=125.75 Aligned_cols=99 Identities=30% Similarity=0.379 Sum_probs=90.2
Q ss_pred ccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEEcCCC
Q psy3430 22 VLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWEVPAK 63 (121)
Q Consensus 22 ~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~~p~~ 63 (121)
++|||++|+| ++||+|+... .+|+|+||++++++.++++|++
T Consensus 80 v~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~g~~ae~~~v~~~~~~~vP~~ 159 (398)
T TIGR01751 80 IIGSDASGVVWRVGPGVTRWKVGDEVVASCLQVDLTAPDGRVGDPMLSSEQRIWGYETNFGSFAEFALVKDYQLMPKPKH 159 (398)
T ss_pred ecccceEEEEEEeCCCCCCCCCCCEEEEccccccCCchhhccCccccccccccccccCCCccceEEEEechHHeEECCCC
Confidence 7999999998 5799998753 2589999999999999999999
Q ss_pred CCHHHHhhcchHHHHHHHHHHh--hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 64 WTLEEASTIPVVYATAYYSLIV--RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 64 ~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++++++.+..+..|+|+++.. ..++++|++++|+|++|++|++++|+|+++|++++
T Consensus 160 l~~~~aa~~~~~~~ta~~al~~~~~~~~~~g~~vlV~Ga~g~vG~~ai~~ak~~G~~vi 218 (398)
T TIGR01751 160 LTWEEAACPGLTGATAYRQLVGWNPATVKPGDNVLIWGAAGGLGSYATQLARAGGGNPV 218 (398)
T ss_pred CCHHHHhhccchHHHHHHHHhhhhccCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCeEE
Confidence 9999999999999999999855 57889999999999889999999999999999865
No 75
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=99.76 E-value=1.3e-17 Score=121.55 Aligned_cols=102 Identities=31% Similarity=0.397 Sum_probs=93.2
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV 85 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~ 85 (121)
.|.++|+|++|+| ++||+|+... .+|+|++|+.++.+.++++|+++++++++.+++...|+|+++.+
T Consensus 59 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~v~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~l~~ 138 (336)
T cd08252 59 QPKILGWDASGVVEAVGSEVTLFKVGDEVYYAGDITRPGSNAEYQLVDERIVGHKPKSLSFAEAAALPLTSLTAWEALFD 138 (336)
T ss_pred CCcccccceEEEEEEcCCCCCCCCCCCEEEEcCCCCCCccceEEEEEchHHeeeCCCCCCHHHhhhhhhHHHHHHHHHHH
Confidence 4568999999998 5799999864 35899999999999999999999999999999999999999888
Q ss_pred hcCCCC-----CCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430 86 RGKMRP-----GESLLVHAGAGGLGQAAISIALHMG-CTVY 120 (121)
Q Consensus 86 ~~~~~~-----g~~vli~ga~g~vG~~aiqla~~~G-~~vi 120 (121)
..++++ |++|+|+|++|++|++++|+|+.+| ++|+
T Consensus 139 ~~~~~~~~~~~g~~vlV~g~~g~vg~~~~~~a~~~G~~~v~ 179 (336)
T cd08252 139 RLGISEDAENEGKTLLIIGGAGGVGSIAIQLAKQLTGLTVI 179 (336)
T ss_pred hcCCCCCcCCCCCEEEEEcCCchHHHHHHHHHHHcCCcEEE
Confidence 888887 9999999999999999999999999 8876
No 76
>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional
Probab=99.76 E-value=6.5e-18 Score=123.49 Aligned_cols=100 Identities=25% Similarity=0.352 Sum_probs=90.0
Q ss_pred CCCccCcceEEEE----------ccCCEEEEE----------------------------ccCCceeEEEEeCCCCeEEc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGL----------------------------VAARSLATTVLADPSFLWEV 60 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~----------------------------~~~g~~~~~~~v~~~~~~~~ 60 (121)
.|.++|||++|+| ++||+|+.. ..+|+|+||+.++.+.++++
T Consensus 53 ~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~ 132 (338)
T PRK09422 53 TGRILGHEGIGIVKEVGPGVTSLKVGDRVSIAWFFEGCGHCEYCTTGRETLCRSVKNAGYTVDGGMAEQCIVTADYAVKV 132 (338)
T ss_pred CCccCCcccceEEEEECCCCccCCCCCEEEEccCCCCCCCChhhcCCCcccCCCccccCccccCcceeEEEEchHHeEeC
Confidence 3678999999998 579999861 12589999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHH-CCCEEe
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALH-MGCTVY 120 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~-~G~~vi 120 (121)
|+++++++++.++..+.|+|+++ +..++++|++|+|+| +|++|++++|+|+. +|++|+
T Consensus 133 p~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~g~~vlV~g-~g~vG~~~~~la~~~~g~~v~ 191 (338)
T PRK09422 133 PEGLDPAQASSITCAGVTTYKAI-KVSGIKPGQWIAIYG-AGGLGNLALQYAKNVFNAKVI 191 (338)
T ss_pred CCCCCHHHeehhhcchhHHHHHH-HhcCCCCCCEEEEEC-CcHHHHHHHHHHHHhCCCeEE
Confidence 99999999999999999999998 788999999999999 79999999999998 499876
No 77
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=99.76 E-value=1.5e-17 Score=120.73 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=88.6
Q ss_pred CCCccCcceEEEE--------ccCCEEEEEc------cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHH
Q psy3430 19 QDCVLGLEFSGRD--------TKGRRVMGLV------AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLI 84 (121)
Q Consensus 19 ~~~~~G~e~~G~V--------~~Gd~V~~~~------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~ 84 (121)
+|.++|+|++|+| ++||+|+++. .+|+|++|++++.+.++++|+++++++++.++..++|++.++.
T Consensus 57 ~~~~~g~e~~G~V~~~~~~~~~~Gd~V~~~~~~~~~~~~g~~~~~~~v~~~~~~~lp~~~~~~~~~~~~~~~~ta~~~~~ 136 (324)
T cd08288 57 FPLVPGIDLAGTVVESSSPRFKPGDRVVLTGWGVGERHWGGYAQRARVKADWLVPLPEGLSARQAMAIGTAGFTAMLCVM 136 (324)
T ss_pred CCCccccceEEEEEeCCCCCCCCCCEEEECCccCCCCCCCcceeEEEEchHHeeeCCCCCCHHHHhhhhhHHHHHHHHHH
Confidence 4678899999997 5799999863 2589999999999999999999999999999999999987764
Q ss_pred --hhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 --VRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 --~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+..+.+ ++++|+|+|++|++|++++|+|+++|++|+
T Consensus 137 ~~~~~~~~~~~~~vlI~ga~g~vg~~~~~~A~~~G~~vi 175 (324)
T cd08288 137 ALEDHGVTPGDGPVLVTGAAGGVGSVAVALLARLGYEVV 175 (324)
T ss_pred HHhhcCcCCCCCEEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence 123445 678999999999999999999999999876
No 78
>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family. Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.
Probab=99.76 E-value=1.3e-17 Score=120.09 Aligned_cols=102 Identities=35% Similarity=0.597 Sum_probs=94.8
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK 88 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~ 88 (121)
+|.++|||++|+| ++||+|+++..+|+|++|+.++.+.++++|+++++.+++.++.++.|+|+++.+..+
T Consensus 57 ~~~~~g~e~~G~v~~vg~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~ta~~~~~~~~~ 136 (325)
T TIGR02824 57 ASDILGLEVAGEVVAVGEGVSRWKVGDRVCALVAGGGYAEYVAVPAGQVLPVPEGLSLVEAAALPETFFTVWSNLFQRGG 136 (325)
T ss_pred CCCCccceeEEEEEEeCCCCCCCCCCCEEEEccCCCcceeEEEecHHHcEeCCCCCCHHHHHhhhHHHHHHHHHHHHhcC
Confidence 3578999999998 579999998766899999999999999999999999999999999999999888899
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++++++++|+|+++++|++++++++.+|++|+
T Consensus 137 ~~~~~~vlv~g~~~~~g~~~~~~a~~~g~~v~ 168 (325)
T TIGR02824 137 LKAGETVLIHGGASGIGTTAIQLAKAFGARVF 168 (325)
T ss_pred CCCCCEEEEEcCcchHHHHHHHHHHHcCCEEE
Confidence 99999999999999999999999999999875
No 79
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.76 E-value=1.4e-17 Score=122.60 Aligned_cols=101 Identities=22% Similarity=0.270 Sum_probs=89.5
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc------------------------------cCCceeEEEEeCCC--
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV------------------------------AARSLATTVLADPS-- 55 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~------------------------------~~g~~~~~~~v~~~-- 55 (121)
.+|.++|||++|+| ++||+|+... .+|+|+||++++.+
T Consensus 52 ~~~~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~~~~~~~~~~~~~~~~g~~~~y~~v~~~~~ 131 (351)
T cd08285 52 RHGMILGHEAVGVVEEVGSEVKDFKPGDRVIVPAITPDWRSVAAQRGYPSQSGGMLGGWKFSNFKDGVFAEYFHVNDADA 131 (351)
T ss_pred CCCcccCcceEEEEEEecCCcCccCCCCEEEEcCcCCCCCCHHHHCcCcccCcCCCCCccccCCCCcceeEEEEcchhhC
Confidence 35789999999998 5799998742 25899999999974
Q ss_pred CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 56 FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 56 ~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
.++++|+++++++++.++..+.|+++++ +..++++|++|||+| +|++|++++|+|+.+|++ ++
T Consensus 132 ~~~~lP~~~~~~~aa~~~~~~~ta~~~~-~~~~~~~g~~vlI~g-~g~iG~~~~~lak~~G~~~v~ 195 (351)
T cd08285 132 NLAPLPDGLTDEQAVMLPDMMSTGFHGA-ELANIKLGDTVAVFG-IGPVGLMAVAGARLRGAGRII 195 (351)
T ss_pred ceEECCCCCCHHHhhhhccchhhHHHHH-HccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence 8999999999999999999999999997 778999999999997 799999999999999994 54
No 80
>PRK10083 putative oxidoreductase; Provisional
Probab=99.76 E-value=1.5e-17 Score=121.77 Aligned_cols=97 Identities=18% Similarity=0.177 Sum_probs=84.8
Q ss_pred CCCccCcceEEEE----------ccCCEEE---------------------------EEccCCceeEEEEeCCCCeEEcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVM---------------------------GLVAARSLATTVLADPSFLWEVP 61 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~---------------------------~~~~~g~~~~~~~v~~~~~~~~p 61 (121)
+|.++|||++|+| ++||+|+ ++..+|+|+||+.++.+.++++|
T Consensus 53 ~p~i~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ip 132 (339)
T PRK10083 53 YPRVIGHEFFGVIDAVGEGVDAARIGERVAVDPVISCGHCYPCSIGKPNVCTSLVVLGVHRDGGFSEYAVVPAKNAHRIP 132 (339)
T ss_pred CCcccccceEEEEEEECCCCccCCCCCEEEEccccCCCCCccccCcCcccCCCCceEEEccCCcceeeEEechHHeEECc
Confidence 5789999999998 6799998 44446899999999999999999
Q ss_pred CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHH-CCCE
Q psy3430 62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALH-MGCT 118 (121)
Q Consensus 62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~-~G~~ 118 (121)
+++++++++ +..++.+++++. +..++++|++|+|+| +|++|++++|+|+. +|++
T Consensus 133 ~~~~~~~a~-~~~~~~~a~~~~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~~G~~ 187 (339)
T PRK10083 133 DAIADQYAV-MVEPFTIAANVT-GRTGPTEQDVALIYG-AGPVGLTIVQVLKGVYNVK 187 (339)
T ss_pred CCCCHHHHh-hhchHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHhCCCC
Confidence 999998875 667788888654 788999999999999 79999999999996 6985
No 81
>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.75 E-value=2.8e-17 Score=118.47 Aligned_cols=102 Identities=33% Similarity=0.507 Sum_probs=93.9
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEcc---CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVA---ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV 85 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~---~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~ 85 (121)
.+..+|+|++|+| ++||+|+.... +|+|++|..++.+.++++|+++++++++.+++++.++|+++.+
T Consensus 58 ~~~~~g~e~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~g~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~ 137 (319)
T cd08267 58 FPPIPGMDFAGEVVAVGSGVTRFKVGDEVFGRLPPKGGGALAEYVVAPESGLAKKPEGVSFEEAAALPVAGLTALQALRD 137 (319)
T ss_pred CCCcccceeeEEEEEeCCCCCCCCCCCEEEEeccCCCCceeeEEEEechhheEECCCCCCHHHHHhhhhHHHHHHHHHHH
Confidence 4668999999998 57999998753 5899999999999999999999999999999999999999988
Q ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 86 RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 86 ~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+++++++|+|+|++|++|++++++|+.+|++|+
T Consensus 138 ~~~~~~g~~vli~g~~g~~g~~~~~la~~~g~~v~ 172 (319)
T cd08267 138 AGKVKPGQRVLINGASGGVGTFAVQIAKALGAHVT 172 (319)
T ss_pred hcCCCCCCEEEEEcCCcHHHHHHHHHHHHcCCEEE
Confidence 88899999999999889999999999999999876
No 82
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=99.75 E-value=2.4e-17 Score=120.65 Aligned_cols=98 Identities=26% Similarity=0.361 Sum_probs=87.0
Q ss_pred CCCccCcceEEEE----------ccCCEEEE---------------------------EccCCceeEEEEeCCCCeEEcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMG---------------------------LVAARSLATTVLADPSFLWEVP 61 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~---------------------------~~~~g~~~~~~~v~~~~~~~~p 61 (121)
+|.++|+|++|+| ++||+|++ +...|+|++|+.++++ ++++|
T Consensus 53 ~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~-~~~~p 131 (337)
T cd08261 53 YPRILGHELSGEVVEVGEGVAGLKVGDRVVVDPYISCGECYACRKGRPNCCENLQVLGVHRDGGFAEYIVVPAD-ALLVP 131 (337)
T ss_pred CCcccccccEEEEEEeCCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCeeeecCCCcceeEEEechh-eEECC
Confidence 3678999999998 57999987 3235899999999999 99999
Q ss_pred CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++++++++.+ ....++++++ +..++++|++|||+| +|.+|++++|+|+.+|++|+
T Consensus 132 ~~~~~~~aa~~-~~~~~a~~~~-~~~~l~~g~~vLI~g-~g~vG~~a~~lA~~~g~~v~ 187 (337)
T cd08261 132 EGLSLDQAALV-EPLAIGAHAV-RRAGVTAGDTVLVVG-AGPIGLGVIQVAKARGARVI 187 (337)
T ss_pred CCCCHHHhhhh-chHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 99999999776 5778888888 788999999999996 78999999999999999876
No 83
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=99.75 E-value=1.3e-17 Score=122.17 Aligned_cols=101 Identities=24% Similarity=0.296 Sum_probs=89.8
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEE------------------------------ccCCceeEEEEeCCC--
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGL------------------------------VAARSLATTVLADPS-- 55 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~------------------------------~~~g~~~~~~~v~~~-- 55 (121)
.+|.++|+|++|+| ++||+|+.. ..+|+|+||++++++
T Consensus 53 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~ 132 (347)
T cd05278 53 KHGMILGHEFVGEVVEVGSDVKRLKPGDRVSVPCITFCGRCRFCRRGYHAHCENGLWGWKLGNRIDGGQAEYVRVPYADM 132 (347)
T ss_pred CCCceeccceEEEEEEECCCccccCCCCEEEecCCCCCCCChhHhCcCcccCcCCCcccccccCCCCeeeEEEEecchhC
Confidence 45689999999998 679999872 225899999999987
Q ss_pred CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 56 FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 56 ~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
.++++|+++++++++.++.++.|||+++ +..+++++++|+|.| +|++|++++|+|+.+|+ +++
T Consensus 133 ~~~~lP~~~~~~~aa~l~~~~~ta~~~~-~~~~~~~~~~VlI~g-~g~vg~~~iqlak~~g~~~v~ 196 (347)
T cd05278 133 NLAKIPDGLPDEDALMLSDILPTGFHGA-ELAGIKPGSTVAVIG-AGPVGLCAVAGARLLGAARII 196 (347)
T ss_pred eEEECCCCCCHHHHhhhcchhhheeehh-hhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence 8999999999999999999999999998 778999999999976 69999999999999996 664
No 84
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=99.75 E-value=1.9e-17 Score=120.58 Aligned_cols=101 Identities=31% Similarity=0.434 Sum_probs=91.2
Q ss_pred CCCccCcceEEEE----------ccCCEEEE------------------E---------ccCCceeEEEEeCCCCeEEcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMG------------------L---------VAARSLATTVLADPSFLWEVP 61 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~------------------~---------~~~g~~~~~~~v~~~~~~~~p 61 (121)
.|.++|+|++|+| ++||+|+. + ..+|+|++|+.++.+.++++|
T Consensus 56 ~~~~~g~~~~G~v~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp 135 (338)
T cd08254 56 LPLTLGHEIAGTVVEVGAGVTNFKVGDRVAVPAVIPCGACALCRRGRGNLCLNQGMPGLGIDGGFAEYIVVPARALVPVP 135 (338)
T ss_pred CCEeccccccEEEEEECCCCccCCCCCEEEECCCCCCCCChhhhCcCcccCCCCCccccccCCcceeeEEechHHeEECC
Confidence 4678999999998 57999986 1 125899999999999999999
Q ss_pred CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++++++++.++.++.|||+++.+..+++++++|||.| +|++|++++|+|+.+|++|+
T Consensus 136 ~~~~~~~a~~~~~~~~ta~~~l~~~~~~~~~~~vli~g-~g~vG~~~~~la~~~G~~V~ 193 (338)
T cd08254 136 DGVPFAQAAVATDAVLTPYHAVVRAGEVKPGETVLVIG-LGGLGLNAVQIAKAMGAAVI 193 (338)
T ss_pred CCCCHHHhhhhcchHHHHHHHHHhccCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEE
Confidence 99999999999999999999998888899999999986 79999999999999999875
No 85
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=99.75 E-value=1.9e-17 Score=123.82 Aligned_cols=100 Identities=25% Similarity=0.304 Sum_probs=90.2
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc-----------------------------------------------
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV----------------------------------------------- 41 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------------------------- 41 (121)
+|.++|||++|+| ++||+|+...
T Consensus 54 ~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (386)
T cd08283 54 KGDILGHEFMGVVEEVGPEVRNLKVGDRVVVPFTIACGECFYCKRGLYSQCDNTNPSAEMAKLYGHAGAGIFGYSHLTGG 133 (386)
T ss_pred CCccccccceEEEEEeCCCCCCCCCCCEEEEcCcCCCCCChhhcCCCcccCCCcccccccccccccccccccccccccCC
Confidence 4789999999998 6899998742
Q ss_pred cCCceeEEEEeCCC--CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-E
Q psy3430 42 AARSLATTVLADPS--FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-T 118 (121)
Q Consensus 42 ~~g~~~~~~~v~~~--~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~ 118 (121)
.+|+|+||++++++ .++++|+++++++++.++....|||+++ +..++++|++|+|+| +|++|++++|+|+.+|+ +
T Consensus 134 ~~g~~~~~~~v~~~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~l-~~~~~~~g~~VlV~g-~G~vG~~~~~la~~~g~~~ 211 (386)
T cd08283 134 YAGGQAEYVRVPFADVGPFKIPDDLSDEKALFLSDILPTGYHAA-ELAEVKPGDTVAVWG-CGPVGLFAARSAKLLGAER 211 (386)
T ss_pred CCCeeEEEEEcccccCeEEECCCCCCHHHHhhhccchhhhHHHH-hhccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCE
Confidence 14899999999987 8999999999999999999999999999 889999999999996 79999999999999998 4
Q ss_pred Ee
Q psy3430 119 VY 120 (121)
Q Consensus 119 vi 120 (121)
++
T Consensus 212 vi 213 (386)
T cd08283 212 VI 213 (386)
T ss_pred EE
Confidence 65
No 86
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.75 E-value=2.7e-17 Score=120.48 Aligned_cols=101 Identities=25% Similarity=0.364 Sum_probs=90.8
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEEc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWEV 60 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~~ 60 (121)
.+.++|+|++|+| ++||+|+... ..|+|++|+.++++.++++
T Consensus 56 ~~~~~g~e~~G~V~~vG~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~s~~~~~~~~~~~l 135 (341)
T cd08297 56 LPLIGGHEGAGVVVAVGPGVSGLKVGDRVGVKWLYDACGKCEYCRTGDETLCPNQKNSGYTVDGTFAEYAIADARYVTPI 135 (341)
T ss_pred CCccCCcccceEEEEeCCCCCCCCCCCEEEEecCCCCCCCCccccCCCcccCCCccccccccCCcceeEEEeccccEEEC
Confidence 3568899999998 5799998642 2588999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
|+++++++++.++..+.|||+++.. .+++++++|||+|+++++|++++|+|+++|++|+
T Consensus 136 p~~~~~~~~a~l~~~~~ta~~~~~~-~~~~~~~~vlV~g~~~~vg~~~~~~a~~~g~~v~ 194 (341)
T cd08297 136 PDGLSFEQAAPLLCAGVTVYKALKK-AGLKPGDWVVISGAGGGLGHLGVQYAKAMGLRVI 194 (341)
T ss_pred CCCCCHHHHHHHHcchHHHHHHHHh-cCCCCCCEEEEECCCchHHHHHHHHHHHCCCeEE
Confidence 9999999999999999999999855 5899999999999888899999999999999876
No 87
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.75 E-value=1.9e-17 Score=121.30 Aligned_cols=98 Identities=32% Similarity=0.452 Sum_probs=87.2
Q ss_pred CCCccCcceEEEE-----------ccCCEEEEEc-----------------cCCceeEEEEeCCCCeEEcCCCCCHHHHh
Q psy3430 19 QDCVLGLEFSGRD-----------TKGRRVMGLV-----------------AARSLATTVLADPSFLWEVPAKWTLEEAS 70 (121)
Q Consensus 19 ~~~~~G~e~~G~V-----------~~Gd~V~~~~-----------------~~g~~~~~~~v~~~~~~~~p~~~~~~~aa 70 (121)
+|.++|+|++|+| ++||+|+++. ..|+|+||++++++.++++|+++++++++
T Consensus 63 ~~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~~s~~~a~ 142 (341)
T cd08262 63 ADIVLGHEFCGEVVDYGPGTERKLKVGTRVTSLPLLLCGQGASCGIGLSPEAPGGYAEYMLLSEALLLRVPDGLSMEDAA 142 (341)
T ss_pred CCcccccceeEEEEEeCCCCcCCCCCCCEEEecCCcCCCCChhhhCCCCcCCCCceeeeEEechHHeEECCCCCCHHHhh
Confidence 4778999999987 3799999872 35899999999999999999999999876
Q ss_pred hcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430 71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119 (121)
Q Consensus 71 ~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~v 119 (121)
++.++.|+|+++ ...++++|++|+|+| +|++|.+++|+|+.+|+++
T Consensus 143 -~~~~~~~a~~~~-~~~~~~~g~~VlI~g-~g~vg~~~~~la~~~G~~~ 188 (341)
T cd08262 143 -LTEPLAVGLHAV-RRARLTPGEVALVIG-CGPIGLAVIAALKARGVGP 188 (341)
T ss_pred -hhhhHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcE
Confidence 677889999996 889999999999997 6999999999999999863
No 88
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=99.75 E-value=2.8e-17 Score=119.71 Aligned_cols=100 Identities=26% Similarity=0.353 Sum_probs=91.0
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCCCeEEc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPSFLWEV 60 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~~~~~~ 60 (121)
.|.++|||++|+| ++||+|+... .+|+|+||+.++.+.++++
T Consensus 58 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~l 137 (329)
T cd08298 58 LPLIPGHEIVGRVEAVGPGVTRFSVGDRVGVPWLGSTCGECRYCRSGRENLCDNARFTGYTVDGGYAEYMVADERFAYPI 137 (329)
T ss_pred CCccccccccEEEEEECCCCCCCcCCCEEEEeccCCCCCCChhHhCcChhhCCCccccccccCCceEEEEEecchhEEEC
Confidence 4679999999998 5799997521 2589999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
|+++++.+++.+++++.|||+++ +..+++++++++|+| +|++|++++|+++++|++|+
T Consensus 138 p~~~~~~~~~~~~~~~~ta~~~~-~~~~~~~~~~vlV~g-~g~vg~~~~~la~~~g~~v~ 195 (329)
T cd08298 138 PEDYDDEEAAPLLCAGIIGYRAL-KLAGLKPGQRLGLYG-FGASAHLALQIARYQGAEVF 195 (329)
T ss_pred CCCCCHHHhhHhhhhhHHHHHHH-HhhCCCCCCEEEEEC-CcHHHHHHHHHHHHCCCeEE
Confidence 99999999999999999999999 889999999999997 89999999999999999876
No 89
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=99.75 E-value=2.9e-17 Score=117.71 Aligned_cols=102 Identities=31% Similarity=0.338 Sum_probs=93.9
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK 88 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~ 88 (121)
+|.++|+|++|+| ++||+|+++...|+|++|+.++.+.++++|+++++++++.++....++++++.+..+
T Consensus 54 ~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l~~~~~ 133 (320)
T cd05286 54 LPFVLGVEGAGVVEAVGPGVTGFKVGDRVAYAGPPGAYAEYRVVPASRLVKLPDGISDETAAALLLQGLTAHYLLRETYP 133 (320)
T ss_pred CCccCCcceeEEEEEECCCCCCCCCCCEEEEecCCCceeEEEEecHHHceeCCCCCCHHHHhhccchHHHHHHHHHHhcC
Confidence 4568999999998 579999987534889999999999999999999999999999999999999988899
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++|++|+|+|++|++|++++++++.+|++|+
T Consensus 134 ~~~g~~vlI~g~~g~~g~~~~~~a~~~g~~v~ 165 (320)
T cd05286 134 VKPGDTVLVHAAAGGVGLLLTQWAKALGATVI 165 (320)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHcCCEEE
Confidence 99999999999999999999999999999875
No 90
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=99.75 E-value=1.9e-17 Score=121.31 Aligned_cols=99 Identities=29% Similarity=0.315 Sum_probs=88.3
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEVP 61 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~p 61 (121)
+|.++|+|++|+| ++||+|+++. ..|+|++|+.++++.++++|
T Consensus 52 ~~~~~g~~~~G~V~~~g~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lP 131 (343)
T cd08236 52 PPLVLGHEFSGTVEEVGSGVDDLAVGDRVAVNPLLPCGKCEYCKKGEYSLCSNYDYIGSRRDGAFAEYVSVPARNLIKIP 131 (343)
T ss_pred CCcccCcceEEEEEEECCCCCcCCCCCEEEEcCCCCCCCChhHHCcChhhCCCcceEecccCCcccceEEechHHeEECc
Confidence 4678999999998 5799999862 35899999999999999999
Q ss_pred CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
+++++++++.+ ....|+|+++ ...+++++++|+|+| +|.+|++++|+|+.+|++ ++
T Consensus 132 ~~~~~~~aa~~-~~~~ta~~~l-~~~~~~~~~~vlI~g-~g~~g~~~~~lA~~~G~~~v~ 188 (343)
T cd08236 132 DHVDYEEAAMI-EPAAVALHAV-RLAGITLGDTVVVIG-AGTIGLLAIQWLKILGAKRVI 188 (343)
T ss_pred CCCCHHHHHhc-chHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence 99999998877 5788999999 478899999999997 799999999999999996 65
No 91
>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast. This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi
Probab=99.75 E-value=4.7e-17 Score=119.80 Aligned_cols=97 Identities=33% Similarity=0.472 Sum_probs=88.3
Q ss_pred CCccCcceEEEE-----------ccCCEEEEEc-----cCCceeEEEEeCCC----CeEEcCCCCCHHHHhhcchHHHHH
Q psy3430 20 DCVLGLEFSGRD-----------TKGRRVMGLV-----AARSLATTVLADPS----FLWEVPAKWTLEEASTIPVVYATA 79 (121)
Q Consensus 20 ~~~~G~e~~G~V-----------~~Gd~V~~~~-----~~g~~~~~~~v~~~----~~~~~p~~~~~~~aa~l~~~~~ta 79 (121)
|.++|+|++|+| ++||+|+++. ..|+|+||+++++. .++++|+++++++++.++.+..|+
T Consensus 59 ~~~~g~e~~G~V~~vG~~v~~~~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~lP~~l~~~~aa~~~~~~~ta 138 (352)
T cd08247 59 EKGLGRDYSGVIVKVGSNVASEWKVGDEVCGIYPHPYGGQGTLSQYLLVDPKKDKKSITRKPENISLEEAAAWPLVLGTA 138 (352)
T ss_pred CCccCceeEEEEEEeCcccccCCCCCCEEEEeecCCCCCCceeeEEEEEccccccceeEECCCCCCHHHHHHhHHHHHHH
Confidence 678999999998 3799999875 25899999999987 789999999999999999999999
Q ss_pred HHHHHhhc-CCCCCCEEEEecCCchHHHHHHHHHHHCC
Q psy3430 80 YYSLIVRG-KMRPGESLLVHAGAGGLGQAAISIALHMG 116 (121)
Q Consensus 80 ~~~l~~~~-~~~~g~~vli~ga~g~vG~~aiqla~~~G 116 (121)
|+++.+.. ++++|++++|+|+++++|++++|+|+.+|
T Consensus 139 ~~~l~~~~~~~~~g~~vlI~ga~~~vg~~~~~~a~~~~ 176 (352)
T cd08247 139 YQILEDLGQKLGPDSKVLVLGGSTSVGRFAIQLAKNHY 176 (352)
T ss_pred HHHHHHhhhccCCCCeEEEECCCchHHHHHHHHHHhcC
Confidence 99997777 89999999999999999999999999874
No 92
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=99.74 E-value=3.8e-17 Score=119.70 Aligned_cols=100 Identities=28% Similarity=0.409 Sum_probs=89.0
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc-------------------------------cCCceeEEEEeCCC--
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV-------------------------------AARSLATTVLADPS-- 55 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~-------------------------------~~g~~~~~~~v~~~-- 55 (121)
+|.++|+|++|+| ++||+|++.. .+|+|++|+.+++.
T Consensus 53 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~ 132 (344)
T cd08284 53 PGFVLGHEFVGEVVEVGPEVRTLKVGDRVVSPFTIACGECFYCRRGQSGRCAKGGLFGYAGSPNLDGAQAEYVRVPFADG 132 (344)
T ss_pred CCcccccceEEEEEeeCCCccccCCCCEEEEcccCCCCCChHHhCcCcccCCCCccccccccCCCCCceeEEEEcccccC
Confidence 3678999999998 5799998753 14889999999964
Q ss_pred CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 56 FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 56 ~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
.++++|+++++++++.++.++.|||+++. ..+++++++|+|+| +|++|++++|+|+.+|+ +++
T Consensus 133 ~~~~~p~~l~~~~a~~l~~~~~ta~~~~~-~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~g~~~v~ 196 (344)
T cd08284 133 TLLKLPDGLSDEAALLLGDILPTGYFGAK-RAQVRPGDTVAVIG-CGPVGLCAVLSAQVLGAARVF 196 (344)
T ss_pred ceEECCCCCCHHHhhhhcCchHHHHhhhH-hcCCccCCEEEEEC-CcHHHHHHHHHHHHcCCceEE
Confidence 99999999999999999999999999994 58899999999996 79999999999999997 665
No 93
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=99.74 E-value=1.5e-17 Score=125.34 Aligned_cols=103 Identities=26% Similarity=0.281 Sum_probs=81.0
Q ss_pred CCCCccCcceEEEE-----------ccCCEEEEEc----------------cCCceeEEEEeCCC----CeEEcCCCCCH
Q psy3430 18 GQDCVLGLEFSGRD-----------TKGRRVMGLV----------------AARSLATTVLADPS----FLWEVPAKWTL 66 (121)
Q Consensus 18 ~~~~~~G~e~~G~V-----------~~Gd~V~~~~----------------~~g~~~~~~~v~~~----~~~~~p~~~~~ 66 (121)
.+|.++|||++|+| ++||||+... .+|+|+||++++++ .++++|+++++
T Consensus 61 ~~p~i~GhE~~G~V~~vG~~v~~~~~vGdrV~~~~~~~c~~~~~c~~~g~~~~G~~aey~~v~~~~~~~~~~~lP~~l~~ 140 (410)
T cd08238 61 KEPVILGHEFAGTILKVGKKWQGKYKPGQRFVIQPALILPDGPSCPGYSYTYPGGLATYHIIPNEVMEQDCLLIYEGDGY 140 (410)
T ss_pred CCCceeccccEEEEEEeCCCccCCCCCCCEEEEcCCcCCCCCCCCCCccccCCCcceEEEEecHHhccCCeEECCCCCCH
Confidence 35789999999998 5799998642 25899999999986 68999999999
Q ss_pred HHHhhc-chH-HHHHHHHH--------HhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC---EEe
Q psy3430 67 EEASTI-PVV-YATAYYSL--------IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC---TVY 120 (121)
Q Consensus 67 ~~aa~l-~~~-~~ta~~~l--------~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~---~vi 120 (121)
++++.+ +.. ..+++.++ .+..++++|++|+|+|++|++|++++|+||.+|+ +|+
T Consensus 141 ~~aal~epl~~~~~~~~a~~~~~~~~~~~~~~~~~g~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi 207 (410)
T cd08238 141 AEASLVEPLSCVIGAYTANYHLQPGEYRHRMGIKPGGNTAILGGAGPMGLMAIDYAIHGPIGPSLLV 207 (410)
T ss_pred HHHhhcchHHHHHHHhhhcccccccchhhhcCCCCCCEEEEEeCCCHHHHHHHHHHHhcccCCceEE
Confidence 988744 211 12234332 2457899999999999899999999999999864 565
No 94
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=99.74 E-value=2.6e-17 Score=121.98 Aligned_cols=102 Identities=22% Similarity=0.284 Sum_probs=91.7
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEE-----------------------------------------------
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGL----------------------------------------------- 40 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~----------------------------------------------- 40 (121)
.+|.++|+|++|+| ++||+|++.
T Consensus 52 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (363)
T cd08279 52 PLPAVLGHEGAGVVEEVGPGVTGVKPGDHVVLSWIPACGTCRYCSRGQPNLCDLGAGILGGQLPDGTRRFTADGEPVGAM 131 (363)
T ss_pred CCCccccccceEEEEEeCCCccccCCCCEEEECCCCCCCCChhhcCCCcccCcccccccccccCCCcccccccCcccccc
Confidence 35678999999998 579999873
Q ss_pred ccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-E
Q psy3430 41 VAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-V 119 (121)
Q Consensus 41 ~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-v 119 (121)
...|+|+||+.++++.++++|+++++++++.++++..|+|.++.+..+++++++|+|+| +|++|++++|+|+.+|++ |
T Consensus 132 ~~~g~~~~~~~~~~~~~~~lp~~~~~~~aa~~~~~~~ta~~~~~~~~~~~~g~~vLI~g-~g~vG~a~i~lak~~G~~~V 210 (363)
T cd08279 132 CGLGTFAEYTVVPEASVVKIDDDIPLDRAALLGCGVTTGVGAVVNTARVRPGDTVAVIG-CGGVGLNAIQGARIAGASRI 210 (363)
T ss_pred ccCccceeeEEeccccEEECCCCCChHHeehhcchhHHHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCcE
Confidence 13489999999999999999999999999999999999999988889999999999996 699999999999999996 6
Q ss_pred e
Q psy3430 120 Y 120 (121)
Q Consensus 120 i 120 (121)
+
T Consensus 211 i 211 (363)
T cd08279 211 I 211 (363)
T ss_pred E
Confidence 4
No 95
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=99.74 E-value=4.6e-17 Score=119.18 Aligned_cols=99 Identities=24% Similarity=0.319 Sum_probs=87.6
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCC-----
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSF----- 56 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~----- 56 (121)
+|.++|+|++|+| ++||+|+++. ..|+|++|++++++.
T Consensus 53 ~~~~~g~~~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~~~ 132 (343)
T cd08235 53 PPRILGHEIAGEIVEVGDGVTGFKVGDRVFVAPHVPCGECHYCLRGNENMCPNYKKFGNLYDGGFAEYVRVPAWAVKRGG 132 (343)
T ss_pred CCcccccceEEEEEeeCCCCCCCCCCCEEEEccCCCCCCChHHHCcCcccCCCcceeccCCCCcceeeEEeccccccccc
Confidence 4678999999998 5799999862 358999999999988
Q ss_pred eEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 57 LWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 57 ~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
++++|+++++++++.+ .++.|||+++. ..++++|++|+|+| +|++|++++|+|+.+|++ ++
T Consensus 133 ~~~lP~~~~~~~aa~~-~~~~~a~~~l~-~~~~~~g~~VlV~g-~g~vg~~~~~la~~~g~~~v~ 194 (343)
T cd08235 133 VLKLPDNVSFEEAALV-EPLACCINAQR-KAGIKPGDTVLVIG-AGPIGLLHAMLAKASGARKVI 194 (343)
T ss_pred EEECCCCCCHHHHHhh-hHHHHHHHHHH-hcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence 9999999999998765 78899999995 45899999999996 799999999999999998 65
No 96
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=99.74 E-value=3.9e-17 Score=118.61 Aligned_cols=100 Identities=33% Similarity=0.459 Sum_probs=89.8
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEcc----------------------------CCceeEEEEeCCCCeEEc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVA----------------------------ARSLATTVLADPSFLWEV 60 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~----------------------------~g~~~~~~~v~~~~~~~~ 60 (121)
.|.++|+|++|+| ++||+|+.... +|+|+||+++++..++++
T Consensus 55 ~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l 134 (306)
T cd08258 55 TPVVLGHEFSGTIVEVGPDVEGWKVGDRVVSETTFSTCGRCPYCRRGDYNLCPHRKGIGTQADGGFAEYVLVPEESLHEL 134 (306)
T ss_pred CCeeeccceEEEEEEECCCcCcCCCCCEEEEccCcCCCCCCcchhCcCcccCCCCceeeecCCCceEEEEEcchHHeEEC
Confidence 4678999999998 57999988641 489999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
|+++++++++ ++....|+|+++....+++++++|+|.| +|++|++++|+|+.+|++|+
T Consensus 135 p~~~~~~~aa-~~~~~~~a~~~l~~~~~~~~g~~vlI~g-~g~~g~~~~~la~~~G~~v~ 192 (306)
T cd08258 135 PENLSLEAAA-LTEPLAVAVHAVAERSGIRPGDTVVVFG-PGPIGLLAAQVAKLQGATVV 192 (306)
T ss_pred cCCCCHHHHH-hhchHHHHHHHHHHhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence 9999999886 7778899999998889999999999976 79999999999999999875
No 97
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=99.74 E-value=3.6e-17 Score=121.29 Aligned_cols=77 Identities=27% Similarity=0.416 Sum_probs=72.4
Q ss_pred CCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 43 ARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 43 ~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
+|+|++|+.++++.++++|+++++.+++.++.++.|||+++.+...++++++|+|+| +|++|++++|+|+.+|++ ++
T Consensus 139 ~g~~~~~~~~~~~~~~~~P~~is~~~aa~l~~~~~tA~~~l~~~~~~~~g~~VlI~g-~g~vG~~~~~lak~~G~~~vi 216 (367)
T cd08263 139 MGGLAEYAVVPATALAPLPESLDYTESAVLGCAGFTAYGALKHAADVRPGETVAVIG-VGGVGSSAIQLAKAFGASPII 216 (367)
T ss_pred CCcceeEEEechhhEEECCCCCCHHHHhHhcchHHHHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEE
Confidence 589999999999999999999999999999999999999998888889999999996 899999999999999987 54
No 98
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=99.73 E-value=6.1e-17 Score=118.82 Aligned_cols=101 Identities=25% Similarity=0.323 Sum_probs=89.8
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc----------------------------cCCceeEEEEeCCC--CeE
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV----------------------------AARSLATTVLADPS--FLW 58 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~----------------------------~~g~~~~~~~v~~~--~~~ 58 (121)
+|.++|||++|+| ++||+|+... .+|+|+||+.+++. .++
T Consensus 54 ~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~ 133 (345)
T cd08286 54 PGRILGHEGVGVVEEVGSAVTNFKVGDRVLISCISSCGTCGYCRKGLYSHCESGGWILGNLIDGTQAEYVRIPHADNSLY 133 (345)
T ss_pred CCceecccceEEEEEeccCccccCCCCEEEECCcCCCCCChHHHCcCcccCCCcccccccccCCeeeeEEEcccccCceE
Confidence 3678999999998 5799998742 13889999999987 899
Q ss_pred EcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430 59 EVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMG-CTVY 120 (121)
Q Consensus 59 ~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G-~~vi 120 (121)
++|+++++++++.++..++|||+++.+..+++++++++|.| +|++|++++|+|+.+| .+++
T Consensus 134 ~lp~~~~~~~aa~l~~~~~ta~~~~~~~~~~~~g~~vlI~g-~g~~g~~~~~~a~~~G~~~v~ 195 (345)
T cd08286 134 KLPEGVDEEAAVMLSDILPTGYECGVLNGKVKPGDTVAIVG-AGPVGLAALLTAQLYSPSKII 195 (345)
T ss_pred ECCCCCCHHHhhhccchhHHHHHHHHhhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence 99999999999999999999999877788999999999987 6999999999999999 6765
No 99
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.73 E-value=6e-17 Score=116.76 Aligned_cols=102 Identities=33% Similarity=0.566 Sum_probs=94.1
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc-----cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV-----AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL 83 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~-----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l 83 (121)
.|.++|+|++|+| ++||+|+++. ..|+|++|+.++++.++++|+++++.+++.++....++|+++
T Consensus 57 ~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~l 136 (326)
T cd08272 57 LPAILGCDVAGVVEAVGEGVTRFRVGDEVYGCAGGLGGLQGSLAEYAVVDARLLALKPANLSMREAAALPLVGITAWEGL 136 (326)
T ss_pred CCcccccceeEEEEEeCCCCCCCCCCCEEEEccCCcCCCCCceeEEEEecHHHcccCCCCCCHHHHHHhHHHHHHHHHHH
Confidence 3678999999998 5799999875 258899999999999999999999999999999999999998
Q ss_pred HhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 84 IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 84 ~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+..+++++++++|+|+++++|++++++++.+|++|+
T Consensus 137 ~~~~~~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~ 173 (326)
T cd08272 137 VDRAAVQAGQTVLIHGGAGGVGHVAVQLAKAAGARVY 173 (326)
T ss_pred HHhcCCCCCCEEEEEcCCCcHHHHHHHHHHHcCCEEE
Confidence 8889999999999999999999999999999999876
No 100
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=99.73 E-value=3.3e-17 Score=120.55 Aligned_cols=102 Identities=24% Similarity=0.252 Sum_probs=90.9
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEc
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEV 60 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~ 60 (121)
..|.++|+|++|+| ++||+|+++. ..|+|++|+.++.+.++++
T Consensus 65 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 144 (350)
T cd08240 65 KLPLVLGHEIVGEVVAVGPDAADVKVGDKVLVYPWIGCGECPVCLAGDENLCAKGRALGIFQDGGYAEYVIVPHSRYLVD 144 (350)
T ss_pred CCCcccccceeEEEEeeCCCCCCCCCCCEEEECCcCCCCCChHHHCcCcccCCCCCceeeeccCcceeeEEecHHHeeeC
Confidence 34678999999998 5899998762 3589999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
|+++++.+++.+.+.+.|||+++.+...++++++|+|+| +|++|++++|+|+.+|+ +|+
T Consensus 145 p~~~s~~~aa~l~~~~~tA~~~~~~~~~~~~~~~vlI~g-~g~vg~~~~~~a~~~G~~~v~ 204 (350)
T cd08240 145 PGGLDPALAATLACSGLTAYSAVKKLMPLVADEPVVIIG-AGGLGLMALALLKALGPANII 204 (350)
T ss_pred CCCCCHHHeehhhchhhhHHHHHHhcccCCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeEE
Confidence 999999999999999999999997777777999999996 79999999999999999 554
No 101
>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic
Probab=99.73 E-value=7.9e-17 Score=118.18 Aligned_cols=101 Identities=26% Similarity=0.347 Sum_probs=89.2
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEE-----------------------------------ccCCceeEEEEe
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGL-----------------------------------VAARSLATTVLA 52 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~-----------------------------------~~~g~~~~~~~v 52 (121)
++|.++|||++|+| ++||+|+.. ..+|+|+||+.+
T Consensus 52 ~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 131 (337)
T cd05283 52 KYPLVPGHEIVGIVVAVGSKVTKFKVGDRVGVGCQVDSCGTCEQCKSGEEQYCPKGVVTYNGKYPDGTITQGGYADHIVV 131 (337)
T ss_pred CCCcccCcceeeEEEEECCCCcccCCCCEEEEecCCCCCCCCccccCCchhcCcchhhcccccccCCCcCCCcceeEEEe
Confidence 34789999999998 589999731 235899999999
Q ss_pred CCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 53 DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 53 ~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++.++++|+++++++++.+.+...|||+++.+ .++++|++++|.| .|++|++++|+++.+|++++
T Consensus 132 ~~~~~~~lp~~~~~~~aa~l~~~~~ta~~~~~~-~~~~~g~~vlV~g-~g~vG~~~~~~a~~~G~~v~ 197 (337)
T cd05283 132 DERFVFKIPEGLDSAAAAPLLCAGITVYSPLKR-NGVGPGKRVGVVG-IGGLGHLAVKFAKALGAEVT 197 (337)
T ss_pred chhheEECCCCCCHHHhhhhhhHHHHHHHHHHh-cCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCeEE
Confidence 999999999999999999999999999999844 4689999999977 79999999999999999875
No 102
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.73 E-value=1.1e-16 Score=115.39 Aligned_cols=102 Identities=31% Similarity=0.411 Sum_probs=93.7
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc-----cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHH
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV-----AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL 83 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~-----~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l 83 (121)
++.++|||++|+| ++||+|+++. .+|++++|+.++++.++++|+++++++++.++.++.|+|.++
T Consensus 57 ~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~ 136 (328)
T cd08268 57 LPARLGYEAAGVVEAVGAGVTGFAVGDRVSVIPAADLGQYGTYAEYALVPAAAVVKLPDGLSFVEAAALWMQYLTAYGAL 136 (328)
T ss_pred CCCCCCcceEEEEEeeCCCCCcCCCCCEEEeccccccCCCccceEEEEechHhcEeCCCCCCHHHHHHhhhHHHHHHHHH
Confidence 4678999999998 5799999874 248899999999999999999999999999999999999999
Q ss_pred HhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 84 IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 84 ~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+..+++++++++|+|+++++|++++++++..|++++
T Consensus 137 ~~~~~~~~~~~vli~g~~~~~g~~~~~~~~~~g~~v~ 173 (328)
T cd08268 137 VELAGLRPGDSVLITAASSSVGLAAIQIANAAGATVI 173 (328)
T ss_pred HHhcCCCCCCEEEEecCccHHHHHHHHHHHHcCCEEE
Confidence 8888999999999999999999999999999999875
No 103
>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi
Probab=99.73 E-value=6.8e-17 Score=120.71 Aligned_cols=101 Identities=33% Similarity=0.514 Sum_probs=86.6
Q ss_pred CCCCccCcceEEEE----------ccCCEEEE---------------------------EccCCceeEEEEeCCCCeEEc
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMG---------------------------LVAARSLATTVLADPSFLWEV 60 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~---------------------------~~~~g~~~~~~~v~~~~~~~~ 60 (121)
.+|.++|||++|+| ++||+|+. +..+|+|++|+.++++.++++
T Consensus 86 ~~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~c~~~~~~~~~~~~~~g~~~~g~~~~~v~v~~~~~~~l 165 (384)
T cd08265 86 EFPVVIGHEFSGVVEKTGKNVKNFEKGDPVTAEEMMWCGMCRACRSGSPNHCKNLKELGFSADGAFAEYIAVNARYAWEI 165 (384)
T ss_pred CCCcccccceEEEEEEECCCCCCCCCCCEEEECCCCCCCCChhhhCcCcccCCCcceeeecCCCcceeeEEechHHeEEC
Confidence 35789999999998 57999985 334689999999999999999
Q ss_pred CCC-------CCHHHHhhcchHHHHHHHHHHhh-cCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 61 PAK-------WTLEEASTIPVVYATAYYSLIVR-GKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 61 p~~-------~~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
|++ ++++ +++++.++.|+|+++... .++++|++|+|+| +|++|++++|+|+.+|+ +|+
T Consensus 166 P~~~~~~~~~~~~~-~a~~~~~~~ta~~al~~~~~~~~~g~~VlV~g-~g~vG~~ai~lA~~~G~~~vi 232 (384)
T cd08265 166 NELREIYSEDKAFE-AGALVEPTSVAYNGLFIRGGGFRPGAYVVVYG-AGPIGLAAIALAKAAGASKVI 232 (384)
T ss_pred CccccccccCCCHH-HhhhhhHHHHHHHHHHhhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence 986 3455 567778999999999666 7899999999996 79999999999999999 665
No 104
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=99.72 E-value=5e-17 Score=118.43 Aligned_cols=100 Identities=29% Similarity=0.349 Sum_probs=88.9
Q ss_pred CCCccCcceEEEE----------ccCCEEEE----------------------------EccCCceeEEEEeCCCCeEEc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMG----------------------------LVAARSLATTVLADPSFLWEV 60 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~----------------------------~~~~g~~~~~~~v~~~~~~~~ 60 (121)
+|.++|+|++|+| ++||+|+. +...|+|++|+.++++.++++
T Consensus 53 ~p~~~g~e~~G~v~~~g~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~ 132 (330)
T cd08245 53 YPLVPGHEIVGEVVEVGAGVEGRKVGDRVGVGWLVGSCGRCEYCRRGLENLCQKAVNTGYTTQGGYAEYMVADAEYTVLL 132 (330)
T ss_pred CCcccCccceEEEEEECCCCcccccCCEEEEccccCCCCCChhhhCcCcccCcCccccCcccCCccccEEEEcHHHeEEC
Confidence 4678999999998 57999973 223589999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
|+++++++++.+...+.|||+++.+ .+++++++|+|+| +|++|++++++|+.+|++|+
T Consensus 133 p~~~~~~~~~~l~~~~~ta~~~l~~-~~~~~~~~vlI~g-~g~iG~~~~~~a~~~G~~v~ 190 (330)
T cd08245 133 PDGLPLAQAAPLLCAGITVYSALRD-AGPRPGERVAVLG-IGGLGHLAVQYARAMGFETV 190 (330)
T ss_pred CCCCCHHHhhhhhhhHHHHHHHHHh-hCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 9999999999999999999999954 7899999999997 67799999999999999876
No 105
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=99.72 E-value=1.1e-16 Score=116.09 Aligned_cols=102 Identities=34% Similarity=0.533 Sum_probs=93.0
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEVP 61 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~p 61 (121)
.|.++|||++|+| ++||+|+... ..|+|++|++++++.++++|
T Consensus 57 ~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~p 136 (342)
T cd08266 57 LPHILGSDGAGVVEAVGPGVTNVKPGQRVVIYPGISCGRCEYCLAGRENLCAQYGILGEHVDGGYAEYVAVPARNLLPIP 136 (342)
T ss_pred CCeecccceEEEEEEeCCCCCCCCCCCEEEEccccccccchhhccccccccccccccccccCcceeEEEEechHHceeCC
Confidence 4678999999998 5799998762 24789999999999999999
Q ss_pred CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++++++++.++++..++++++.+..+++++++++|+|+++++|++++++++..|++++
T Consensus 137 ~~~~~~~a~~~~~~~~~a~~~l~~~~~~~~~~~vlI~g~~~~iG~~~~~~~~~~g~~v~ 195 (342)
T cd08266 137 DNLSFEEAAAAPLTFLTAWHMLVTRARLRPGETVLVHGAGSGVGSAAIQIAKLFGATVI 195 (342)
T ss_pred CCCCHHHHHhhhhHHHHHHHHHHHhcCCCCCCEEEEECCCchHHHHHHHHHHHcCCEEE
Confidence 99999999999999999999988889999999999999999999999999999999875
No 106
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.72 E-value=7.4e-17 Score=118.49 Aligned_cols=99 Identities=28% Similarity=0.401 Sum_probs=86.9
Q ss_pred CCCccCcceEEEE----------ccCCEEEE------------------------E----ccCCceeEEEEeCCCCeEEc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMG------------------------L----VAARSLATTVLADPSFLWEV 60 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~------------------------~----~~~g~~~~~~~v~~~~~~~~ 60 (121)
.|.++|+|++|+| ++||+|++ + ...|+|+||++++++.++++
T Consensus 54 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~l 133 (343)
T cd05285 54 EPMVLGHESAGTVVAVGSGVTHLKVGDRVAIEPGVPCRTCEFCKSGRYNLCPDMRFAATPPVDGTLCRYVNHPADFCHKL 133 (343)
T ss_pred CCcccCcceeEEEEeeCCCCCCCCCCCEEEEccccCCCCChhHhCcCcccCcCccccccccCCCceeeeEEecHHHcEEC
Confidence 4668999999998 57999986 2 12589999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
|+++++++++.+ .++.++++++ +..++++|++|+|+| +|++|++++|+||.+|++ |+
T Consensus 134 P~~~~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g-~g~vG~~a~~lak~~G~~~v~ 191 (343)
T cd05285 134 PDNVSLEEGALV-EPLSVGVHAC-RRAGVRPGDTVLVFG-AGPIGLLTAAVAKAFGATKVV 191 (343)
T ss_pred cCCCCHHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence 999999998766 5788999997 889999999999987 689999999999999987 54
No 107
>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH). Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo
Probab=99.72 E-value=9.1e-17 Score=119.65 Aligned_cols=100 Identities=24% Similarity=0.308 Sum_probs=87.5
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc-------------------------------------cCCceeEEEE
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV-------------------------------------AARSLATTVL 51 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~-------------------------------------~~g~~~~~~~ 51 (121)
+|.++|||++|+| ++||+|+... .+|+|+||++
T Consensus 53 ~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~g~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~a~y~~ 132 (375)
T cd08282 53 PGLVLGHEAMGEVEEVGSAVESLKVGDRVVVPFNVACGRCRNCKRGLTGVCLTVNPGRAGGAYGYVDMGPYGGGQAEYLR 132 (375)
T ss_pred CCceeccccEEEEEEeCCCCCcCCCCCEEEEeCCCCCCCCHHHHCcCcccCCCCCcccccccccccccCCCCCeeeeEEE
Confidence 4789999999998 5899998621 1388999999
Q ss_pred eCCC--CeEEcCCCCCHH---HHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 52 ADPS--FLWEVPAKWTLE---EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 52 v~~~--~~~~~p~~~~~~---~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
++.+ .++++|++++++ +++.+..++.|+|+++ +..++++|++|+|.| .|++|++++|+|+++|+ +++
T Consensus 133 v~~~~~~~~~lP~~~~~~~~~~~a~~~~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vg~~~~~~a~~~G~~~vi 205 (375)
T cd08282 133 VPYADFNLLKLPDRDGAKEKDDYLMLSDIFPTGWHGL-ELAGVQPGDTVAVFG-AGPVGLMAAYSAILRGASRVY 205 (375)
T ss_pred eecccCcEEECCCCCChhhhhheeeecchHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence 9975 899999999998 5678888999999999 888999999999976 79999999999999997 665
No 108
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=99.72 E-value=1.2e-16 Score=116.25 Aligned_cols=98 Identities=27% Similarity=0.290 Sum_probs=87.5
Q ss_pred CCccCcceEEEE--------ccCCEEEEEccCCceeEEEEeCC-CCeEEcCCCCC--HHHHhh-cchHHHHHHHHHHhhc
Q psy3430 20 DCVLGLEFSGRD--------TKGRRVMGLVAARSLATTVLADP-SFLWEVPAKWT--LEEAST-IPVVYATAYYSLIVRG 87 (121)
Q Consensus 20 ~~~~G~e~~G~V--------~~Gd~V~~~~~~g~~~~~~~v~~-~~~~~~p~~~~--~~~aa~-l~~~~~ta~~~l~~~~ 87 (121)
+.++|+|++|+| ++||+|+++ ++|++|+.+++ +.++++|++++ +.++++ +++++.|+|+++.+..
T Consensus 65 ~~~~g~e~~G~V~~~G~~~~~~Gd~V~~~---~~~~~~~~v~~~~~~~~lP~~~~~~~~~~~~~l~~~~~ta~~~l~~~~ 141 (329)
T cd05288 65 GEPMRGGGVGEVVESRSPDFKVGDLVSGF---LGWQEYAVVDGASGLRKLDPSLGLPLSAYLGVLGMTGLTAYFGLTEIG 141 (329)
T ss_pred CCcccCceEEEEEecCCCCCCCCCEEecc---cceEEEEEecchhhcEECCcccCCCHHHHHHhcccHHHHHHHHHHhcc
Confidence 457899999998 579999886 47999999999 99999999985 545545 8999999999998888
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++.++++|+|+|++|++|++++|+|+.+|++|+
T Consensus 142 ~~~~~~~vlI~g~~g~ig~~~~~~a~~~G~~vi 174 (329)
T cd05288 142 KPKPGETVVVSAAAGAVGSVVGQIAKLLGARVV 174 (329)
T ss_pred CCCCCCEEEEecCcchHHHHHHHHHHHcCCEEE
Confidence 899999999999999999999999999999876
No 109
>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.72 E-value=1.3e-16 Score=115.31 Aligned_cols=101 Identities=29% Similarity=0.444 Sum_probs=93.5
Q ss_pred CCccCcceEEEE----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhh
Q psy3430 20 DCVLGLEFSGRD----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR 86 (121)
Q Consensus 20 ~~~~G~e~~G~V----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~ 86 (121)
+.++|||++|+| ++||+|++.. .+|+|++|+.++++.++++|+++++.+++.+.+++.|+++++.+.
T Consensus 57 ~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~s~~~~~~~~~~~ip~~~~~~~~a~~~~~~~~a~~~~~~~ 136 (325)
T cd08271 57 PHVPGVDGAGVVVAVGAKVTGWKVGDRVAYHASLARGGSFAEYTVVDARAVLPLPDSLSFEEAAALPCAGLTAYQALFKK 136 (325)
T ss_pred CcccccceEEEEEEeCCCCCcCCCCCEEEeccCCCCCccceeEEEeCHHHeEECCCCCCHHHHHhhhhhHHHHHHHHHHh
Confidence 668999999998 5899999875 358999999999999999999999999999999999999999888
Q ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.++++|++++|+|+++++|++++++++..|++++
T Consensus 137 ~~~~~g~~vlI~g~~~~ig~~~~~~a~~~g~~v~ 170 (325)
T cd08271 137 LRIEAGRTILITGGAGGVGSFAVQLAKRAGLRVI 170 (325)
T ss_pred cCCCCCCEEEEECCccHHHHHHHHHHHHcCCEEE
Confidence 9999999999999889999999999999999875
No 110
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=99.72 E-value=1.3e-16 Score=116.81 Aligned_cols=99 Identities=25% Similarity=0.324 Sum_probs=85.5
Q ss_pred CCCccCcceEEEE----------ccCCEEEEE-------------------------c-------cCCceeEEEEeCCCC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGL-------------------------V-------AARSLATTVLADPSF 56 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~-------------------------~-------~~g~~~~~~~v~~~~ 56 (121)
+|.++|+|++|+| ++||+|+.. . .+|+|+||++++++.
T Consensus 53 ~p~~~g~e~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~ 132 (339)
T cd08232 53 EPMVLGHEVSGVVEAVGPGVTGLAPGQRVAVNPSRPCGTCDYCRAGRPNLCLNMRFLGSAMRFPHVQGGFREYLVVDASQ 132 (339)
T ss_pred CCeecCccceEEEEeeCCCCCcCCCCCEEEEccCCcCCCChHHhCcCcccCccccceeeccccCCCCCceeeEEEechHH
Confidence 4678999999998 579999862 1 258999999999999
Q ss_pred eEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 57 LWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 57 ~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
++++|+++++++++. ..++.|+|+++.+...+ ++++|||.| +|++|++++|+|+.+|+ +++
T Consensus 133 ~~~iP~~~~~~~aa~-~~~~~~a~~~l~~~~~~-~~~~VLI~g-~g~vG~~~~~lak~~G~~~v~ 194 (339)
T cd08232 133 CVPLPDGLSLRRAAL-AEPLAVALHAVNRAGDL-AGKRVLVTG-AGPIGALVVAAARRAGAAEIV 194 (339)
T ss_pred eEECcCCCCHHHhhh-cchHHHHHHHHHhcCCC-CCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence 999999999998865 67888999998666666 999999987 78999999999999998 664
No 111
>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.71 E-value=3.2e-16 Score=113.74 Aligned_cols=100 Identities=39% Similarity=0.612 Sum_probs=91.7
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK 88 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~ 88 (121)
.|.++|+|++|+| ++||+|+++..+|+|++|+.++.+.++++|+++++++++.+..+..++|+++.+..+
T Consensus 56 ~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~ 135 (337)
T cd08275 56 PPFVPGFECAGTVEAVGEGVKDFKVGDRVMGLTRFGGYAEVVNVPADQVFPLPDGMSFEEAAAFPVNYLTAYYALFELGN 135 (337)
T ss_pred CCCCCcceeEEEEEEECCCCcCCCCCCEEEEecCCCeeeeEEEecHHHeEECCCCCCHHHHhhhhHHHHHHHHHHHHhhC
Confidence 4678999999998 579999998767899999999999999999999999999999999999999988899
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHC-CCE
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHM-GCT 118 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~-G~~ 118 (121)
++++++|+|+|++|++|++++|+|+.+ +..
T Consensus 136 ~~~~~~vli~g~~g~~g~~~~~~a~~~~~~~ 166 (337)
T cd08275 136 LRPGQSVLVHSAAGGVGLAAGQLCKTVPNVT 166 (337)
T ss_pred CCCCCEEEEEcCcchHHHHHHHHHHHccCcE
Confidence 999999999998899999999999998 443
No 112
>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=99.70 E-value=2.5e-16 Score=114.32 Aligned_cols=101 Identities=28% Similarity=0.371 Sum_probs=91.9
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEcc---------------------CCceeEEEEeCCCCeEEcCCCCCHH
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVA---------------------ARSLATTVLADPSFLWEVPAKWTLE 67 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~---------------------~g~~~~~~~v~~~~~~~~p~~~~~~ 67 (121)
.|.++|||++|+| ++||+|+.... +|+|++|+.++.+.++++|+++++.
T Consensus 57 ~~~~~g~e~~G~v~~~G~~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp~~~~~~ 136 (336)
T cd08276 57 DPLIPLSDGAGEVVAVGEGVTRFKVGDRVVPTFFPNWLDGPPTAEDEASALGGPIDGVLAEYVVLPEEGLVRAPDHLSFE 136 (336)
T ss_pred CCcccccceeEEEEEeCCCCcCCCCCCEEEEecccccccccccccccccccccccCceeeeEEEecHHHeEECCCCCCHH
Confidence 4678999999998 47999998651 5789999999999999999999999
Q ss_pred HHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 68 EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 68 ~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++.+...+.+||+++.+..++++|++|+|+| +|++|+++++++++.|++|+
T Consensus 137 ~a~~~~~~~~~a~~~l~~~~~~~~g~~vli~g-~g~~g~~~~~~a~~~G~~v~ 188 (336)
T cd08276 137 EAATLPCAGLTAWNALFGLGPLKPGDTVLVQG-TGGVSLFALQFAKAAGARVI 188 (336)
T ss_pred HhhhhhHHHHHHHHHHHhhcCCCCCCEEEEEC-CcHHHHHHHHHHHHcCCEEE
Confidence 99999999999999998888999999999996 89999999999999999876
No 113
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=99.70 E-value=2.6e-16 Score=112.56 Aligned_cols=102 Identities=28% Similarity=0.461 Sum_probs=93.3
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc---cCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV---AARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV 85 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~ 85 (121)
.|.++|||++|+| ++||+|+++. .+|+|++|+.++.+.++++|+++++.+++.++....++++++.+
T Consensus 59 ~~~~~g~e~~G~v~~~G~~~~~~~~G~~V~~~~~~~~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~a~~~~~~ 138 (309)
T cd05289 59 LPLIPGHDVAGVVVAVGPGVTGFKVGDEVFGMTPFTRGGAYAEYVVVPADELALKPANLSFEEAAALPLAGLTAWQALFE 138 (309)
T ss_pred CCCccccceeEEEEeeCCCCCCCCCCCEEEEccCCCCCCcceeEEEecHHHhccCCCCCCHHHHHhhhHHHHHHHHHHHh
Confidence 4778999999998 5799999875 24899999999999999999999999999999999999999977
Q ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 86 RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 86 ~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+++++++++|+|++|.+|++++++++..|++|+
T Consensus 139 ~~~~~~~~~vlv~g~~g~~g~~~~~~a~~~g~~v~ 173 (309)
T cd05289 139 LGGLKAGQTVLIHGAAGGVGSFAVQLAKARGARVI 173 (309)
T ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHcCCEEE
Confidence 78899999999999889999999999999999876
No 114
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=99.70 E-value=2.6e-16 Score=114.31 Aligned_cols=99 Identities=26% Similarity=0.239 Sum_probs=83.5
Q ss_pred CCCccCcceEEEE-------ccCCEEEE---------------------------E-ccCCceeEEEEeCCCCeEEcCCC
Q psy3430 19 QDCVLGLEFSGRD-------TKGRRVMG---------------------------L-VAARSLATTVLADPSFLWEVPAK 63 (121)
Q Consensus 19 ~~~~~G~e~~G~V-------~~Gd~V~~---------------------------~-~~~g~~~~~~~v~~~~~~~~p~~ 63 (121)
.|.++|+|++|+| ++||+|.. + ..+|+|+||++++++.++++|++
T Consensus 50 ~~~~~G~e~~G~Vv~~G~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP~~ 129 (319)
T cd08242 50 FPGVPGHEFVGIVEEGPEAELVGKRVVGEINIACGRCEYCRRGLYTHCPNRTVLGIVDRDGAFAEYLTLPLENLHVVPDL 129 (319)
T ss_pred CCCccCceEEEEEEEeCCCCCCCCeEEECCCcCCCCChhhhCcCcccCCCCcccCccCCCCceEEEEEechHHeEECcCC
Confidence 4678999999998 46888863 1 12589999999999999999999
Q ss_pred CCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 64 WTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 64 ~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++++++.+ ....+++..+ +..+++++++|+|+| +|++|++++|+|+.+|++|+
T Consensus 130 ~~~~~aa~~-~~~~~~~~~~-~~~~~~~g~~vlV~g-~g~vg~~~~q~a~~~G~~vi 183 (319)
T cd08242 130 VPDEQAVFA-EPLAAALEIL-EQVPITPGDKVAVLG-DGKLGLLIAQVLALTGPDVV 183 (319)
T ss_pred CCHHHhhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 999888754 4555677665 788999999999997 79999999999999999875
No 115
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.70 E-value=2.6e-16 Score=114.79 Aligned_cols=99 Identities=26% Similarity=0.344 Sum_probs=87.3
Q ss_pred CCCccCcceEEEE----------ccCCEEEE-------------------------E--ccCCceeEEEEeCCCCeEEcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMG-------------------------L--VAARSLATTVLADPSFLWEVP 61 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~-------------------------~--~~~g~~~~~~~v~~~~~~~~p 61 (121)
+|.++|+|++|+| ++||+|+. + ..+|+|+||++++++.++++|
T Consensus 52 ~p~~~g~~~~G~v~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~lP 131 (334)
T cd08234 52 PPLVPGHEFAGVVVAVGSKVTGFKVGDRVAVDPNIYCGECFYCRRGRPNLCENLTAVGVTRNGGFAEYVVVPAKQVYKIP 131 (334)
T ss_pred CCcccccceEEEEEEeCCCCCCCCCCCEEEEcCCcCCCCCccccCcChhhCCCcceeccCCCCcceeEEEecHHHcEECc
Confidence 5678999999998 57999986 1 135899999999999999999
Q ss_pred CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
+++++.+++.+ ..+.++++++ +..+++++++|+|+| +|.+|++++|+|+.+|++ ++
T Consensus 132 ~~~~~~~aa~~-~~~~~a~~~l-~~~~~~~g~~vlI~g-~g~vg~~~~~la~~~G~~~v~ 188 (334)
T cd08234 132 DNLSFEEAALA-EPLSCAVHGL-DLLGIKPGDSVLVFG-AGPIGLLLAQLLKLNGASRVT 188 (334)
T ss_pred CCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence 99999988765 7888999998 888999999999997 699999999999999987 54
No 116
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=99.69 E-value=5.1e-16 Score=114.34 Aligned_cols=99 Identities=23% Similarity=0.271 Sum_probs=86.0
Q ss_pred CCCCccCcceEEEE-------c-----cCCEEEE---------------------------Ec--cCCceeEEEEeCCC-
Q psy3430 18 GQDCVLGLEFSGRD-------T-----KGRRVMG---------------------------LV--AARSLATTVLADPS- 55 (121)
Q Consensus 18 ~~~~~~G~e~~G~V-------~-----~Gd~V~~---------------------------~~--~~g~~~~~~~v~~~- 55 (121)
++|.++|+|++|+| + +||+|+. +. ..|+|+||+.++++
T Consensus 61 ~~p~~~g~e~~G~v~~vG~~v~~~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~ 140 (350)
T cd08256 61 KPPMIPGHEFVGRVVELGEGAEERGVKVGDRVISEQIVPCWNCRFCNRGQYWMCQKHDLYGFQNNVNGGMAEYMRFPKEA 140 (350)
T ss_pred CCCcccCcceeEEEEEeCCCcccCCCCCCCEEEECCcCCCCCChHHhCcCcccCcCccceeeccCCCCcceeeEEccccc
Confidence 35678999999998 2 5999986 31 35899999999987
Q ss_pred CeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430 56 FLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119 (121)
Q Consensus 56 ~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~v 119 (121)
.++++|+++++++++.+ .++.|+|+++ +..+++++++|+|.| +|++|++++|+|+++|+++
T Consensus 141 ~~~~lP~~~~~~~aa~~-~~~~ta~~a~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~~ 201 (350)
T cd08256 141 IVHKVPDDIPPEDAILI-EPLACALHAV-DRANIKFDDVVVLAG-AGPLGLGMIGAARLKNPKK 201 (350)
T ss_pred ceEECCCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcE
Confidence 57899999999999888 8999999998 888999999999955 7999999999999999853
No 117
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=99.69 E-value=5.2e-16 Score=111.48 Aligned_cols=102 Identities=35% Similarity=0.609 Sum_probs=93.1
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK 88 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~ 88 (121)
.|.++|+|++|+| ++||+|+++...|++++|+.++.+.++++|+++++.+++.+..+..++++++.+..+
T Consensus 57 ~~~~~g~e~~G~v~~~g~~~~~~~~G~~V~~~~~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~~a~~~~~~~~~ 136 (323)
T cd08241 57 LPFVPGSEVAGVVEAVGEGVTGFKVGDRVVALTGQGGFAEEVVVPAAAVFPLPDGLSFEEAAALPVTYGTAYHALVRRAR 136 (323)
T ss_pred CCCcccceeEEEEEEeCCCCCCCCCCCEEEEecCCceeEEEEEcCHHHceeCCCCCCHHHHhhhhhHHHHHHHHHHHhcC
Confidence 3568999999998 479999998645899999999999999999999999998999999999999977889
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++++++++|+|++|++|++++++++..|++|+
T Consensus 137 ~~~~~~vli~g~~~~~g~~~~~~a~~~g~~v~ 168 (323)
T cd08241 137 LQPGETVLVLGAAGGVGLAAVQLAKALGARVI 168 (323)
T ss_pred CCCCCEEEEEcCCchHHHHHHHHHHHhCCEEE
Confidence 99999999999889999999999999999875
No 118
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=99.68 E-value=5.3e-16 Score=115.13 Aligned_cols=97 Identities=34% Similarity=0.451 Sum_probs=78.4
Q ss_pred ccCcceEEEE---------ccCCEEEEEc--------------------------------cCCceeEEEEeCCCC-eEE
Q psy3430 22 VLGLEFSGRD---------TKGRRVMGLV--------------------------------AARSLATTVLADPSF-LWE 59 (121)
Q Consensus 22 ~~G~e~~G~V---------~~Gd~V~~~~--------------------------------~~g~~~~~~~v~~~~-~~~ 59 (121)
++|||++|+| ++||||..-. .+|+|+||+.+|.+. +.+
T Consensus 58 i~GHE~~G~V~evG~~~~~~~GdrVvv~~~~~Cg~C~~C~~G~~~~C~~~~~~g~~~~~~~~~G~~aEyv~vp~~~~~~~ 137 (350)
T COG1063 58 ILGHEFVGEVVEVGVVRGFKVGDRVVVEPNIPCGHCRYCRAGEYNLCENPGFYGYAGLGGGIDGGFAEYVRVPADFNLAK 137 (350)
T ss_pred ccCccceEEEEEeccccCCCCCCEEEECCCcCCCCChhHhCcCcccCCCccccccccccCCCCCceEEEEEeccccCeec
Confidence 9999999987 6789994211 248999999999755 455
Q ss_pred cCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 60 ~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
+||++ ..+.+++..++.|++++.......+++++|+|.| +|++|++++|+++.+|+ +|+
T Consensus 138 ~pd~~-~~~~aal~epla~~~~~~a~~~~~~~~~~V~V~G-aGpIGLla~~~a~~~Ga~~Vi 197 (350)
T COG1063 138 LPDGI-DEEAAALTEPLATAYHGHAERAAVRPGGTVVVVG-AGPIGLLAIALAKLLGASVVI 197 (350)
T ss_pred CCCCC-ChhhhhhcChhhhhhhhhhhccCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCceEE
Confidence 58887 5566789999999988855666667777999999 89999999999999998 554
No 119
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=99.68 E-value=7.7e-16 Score=110.99 Aligned_cols=97 Identities=27% Similarity=0.282 Sum_probs=83.2
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK 88 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~ 88 (121)
+|.++|+|++|+| ++||+|+.+.. |+|++|+.++++.++++|+++ ..++....++.|+++++. ..+
T Consensus 51 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~-g~~~~~~~v~~~~~~~lP~~~--~~~~~~~~~~~~a~~~~~-~~~ 126 (312)
T cd08269 51 EPGGPGHEGWGRVVALGPGVRGLAVGDRVAGLSG-GAFAEYDLADADHAVPLPSLL--DGQAFPGEPLGCALNVFR-RGW 126 (312)
T ss_pred CCcccceeeEEEEEEECCCCcCCCCCCEEEEecC-CcceeeEEEchhheEECCCch--hhhHHhhhhHHHHHHHHH-hcC
Confidence 3678999999998 47999998754 789999999999999999998 233222378889999984 889
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
++++++++|+| +|++|++++|+|+.+|++ |+
T Consensus 127 ~~~~~~vlI~g-~g~vg~~~~~la~~~g~~~v~ 158 (312)
T cd08269 127 IRAGKTVAVIG-AGFIGLLFLQLAAAAGARRVI 158 (312)
T ss_pred CCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence 99999999996 799999999999999998 65
No 120
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=99.66 E-value=5.8e-16 Score=111.37 Aligned_cols=100 Identities=25% Similarity=0.328 Sum_probs=84.8
Q ss_pred CCCCccCcceEEE----E--------ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCC--HHHHhhcchHHHHHHHHH
Q psy3430 18 GQDCVLGLEFSGR----D--------TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWT--LEEASTIPVVYATAYYSL 83 (121)
Q Consensus 18 ~~~~~~G~e~~G~----V--------~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~--~~~aa~l~~~~~ta~~~l 83 (121)
.+|.-+|-...|- | ++||.|.+.. +|+||.+++.+.+.|++++.- ......+..+..|||.+|
T Consensus 66 ~~P~~lG~~~~gg~V~~Vv~S~~~~f~~GD~V~~~~---GWq~y~i~~~~~l~Kvd~~~~pl~~~LgvLGmpG~TAY~gL 142 (340)
T COG2130 66 APPVELGEVMVGGTVAKVVASNHPGFQPGDIVVGVS---GWQEYAISDGEGLRKLDPSPAPLSAYLGVLGMPGLTAYFGL 142 (340)
T ss_pred CCCcCCCceeECCeeEEEEecCCCCCCCCCEEEecc---cceEEEeechhhceecCCCCCCcchHHhhcCCchHHHHHHH
Confidence 3566667665543 3 8999999874 799999999999999985432 123468889999999999
Q ss_pred HhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 84 IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 84 ~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+.+++||+|+|.+|+|++|..+.|+||..|++|+
T Consensus 143 l~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVV 179 (340)
T COG2130 143 LDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVV 179 (340)
T ss_pred HHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEE
Confidence 9999999999999999999999999999999999987
No 121
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=99.66 E-value=1.3e-15 Score=111.77 Aligned_cols=98 Identities=27% Similarity=0.302 Sum_probs=83.8
Q ss_pred CCCccCcceEEEE----------ccCCEEEE---------------------------EccCCceeEEEEeCCCCeEEcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMG---------------------------LVAARSLATTVLADPSFLWEVP 61 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~---------------------------~~~~g~~~~~~~v~~~~~~~~p 61 (121)
+|.++|+|++|+| ++||+|++ +...|+|++|++++++.++++|
T Consensus 55 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~lp 134 (340)
T TIGR00692 55 PPQVVGHEVAGEVVGIGPGVEGIKVGDYVSVETHIVCGKCYACRRGQYHVCQNTKIFGVDTDGCFAEYAVVPAQNIWKNP 134 (340)
T ss_pred CCcccccceEEEEEEECCCCCcCCCCCEEEECCcCCCCCChhhhCcChhhCcCcceEeecCCCcceeEEEeehHHcEECc
Confidence 4668999999998 57999987 2245899999999999999999
Q ss_pred CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
++++++++ +++.++.++++++ ..++++|++++|.| +|++|.+++|+|+.+|++ |+
T Consensus 135 ~~~~~~~a-~~~~~~~~a~~~~--~~~~~~g~~vlI~~-~g~vg~~a~~la~~~G~~~v~ 190 (340)
T TIGR00692 135 KSIPPEYA-TIQEPLGNAVHTV--LAGPISGKSVLVTG-AGPIGLMAIAVAKASGAYPVI 190 (340)
T ss_pred CCCChHhh-hhcchHHHHHHHH--HccCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence 99998654 6778889999886 34578999999976 799999999999999996 64
No 122
>PLN02702 L-idonate 5-dehydrogenase
Probab=99.65 E-value=1.7e-15 Score=112.21 Aligned_cols=97 Identities=25% Similarity=0.335 Sum_probs=83.0
Q ss_pred CCCccCcceEEEE----------ccCCEEEEE-------------------------c---cCCceeEEEEeCCCCeEEc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGL-------------------------V---AARSLATTVLADPSFLWEV 60 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~-------------------------~---~~g~~~~~~~v~~~~~~~~ 60 (121)
+|.++|||++|+| ++||+|+.. . .+|+|+||++++++.++++
T Consensus 73 ~p~~~G~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~g~~~~c~~~~~~~~~~~~g~~~~y~~v~~~~~~~~ 152 (364)
T PLN02702 73 EPMVIGHECAGIIEEVGSEVKHLVVGDRVALEPGISCWRCNLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKL 152 (364)
T ss_pred CCcccccceeEEEEEECCCCCCCCCCCEEEEcCCCCCCCCcchhCcCcccCCCccccCCCCCCCcccceEEcchHHeEEC
Confidence 4678999999998 589999862 1 1489999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT 118 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~ 118 (121)
|+++++++++.. .++.++++++ ...+++++++|+|+| +|++|++++|+|+.+|++
T Consensus 153 P~~l~~~~aa~~-~~~~~a~~~~-~~~~~~~g~~vlI~g-~g~vG~~~~~~a~~~G~~ 207 (364)
T PLN02702 153 PENVSLEEGAMC-EPLSVGVHAC-RRANIGPETNVLVMG-AGPIGLVTMLAARAFGAP 207 (364)
T ss_pred CCCCCHHHHhhh-hHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 999999988642 3455688887 788999999999997 799999999999999986
No 123
>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like. This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=99.64 E-value=4.6e-15 Score=108.82 Aligned_cols=98 Identities=23% Similarity=0.316 Sum_probs=81.3
Q ss_pred CCCccCcceEEEE----------ccCCEEEE-Ec--------------------------cCCceeEEEEeCCC--CeEE
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMG-LV--------------------------AARSLATTVLADPS--FLWE 59 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~-~~--------------------------~~g~~~~~~~v~~~--~~~~ 59 (121)
.|.++|||++|+| ++||+|+. +. .+|+|+||++++.+ .+++
T Consensus 53 ~~~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~ 132 (345)
T cd08287 53 APAPIGHEFVGVVEEVGSEVTSVKPGDFVIAPFAISDGTCPFCRAGFTTSCVHGGFWGAFVDGGQGEYVRVPLADGTLVK 132 (345)
T ss_pred CCcccccceEEEEEEeCCCCCccCCCCEEEeccccCCCCChhhhCcCcccCCCCCcccCCCCCceEEEEEcchhhCceEE
Confidence 3679999999998 57999986 22 13889999999974 8999
Q ss_pred cCCCCCHHHH-----hhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430 60 VPAKWTLEEA-----STIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT 118 (121)
Q Consensus 60 ~p~~~~~~~a-----a~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~ 118 (121)
+|++++++++ +++...+.||++++ +..++++|++|+|.| +|++|++++|+|+++|++
T Consensus 133 lP~~l~~~~~~~~~~~~l~~~~~~a~~~~-~~~~~~~g~~vlI~g-~g~vg~~~~~lak~~G~~ 194 (345)
T cd08287 133 VPGSPSDDEDLLPSLLALSDVMGTGHHAA-VSAGVRPGSTVVVVG-DGAVGLCAVLAAKRLGAE 194 (345)
T ss_pred CCCCCChhhhhhhhhHhhhcHHHHHHHHH-HhcCCCCCCEEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 9999988222 12336788999998 578999999999976 899999999999999985
No 124
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=99.62 E-value=8.6e-15 Score=107.47 Aligned_cols=98 Identities=23% Similarity=0.333 Sum_probs=83.1
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEcC
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEVP 61 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~p 61 (121)
+|.++|+|++|+| ++||+|+++. ..|+|++|++++++.++++|
T Consensus 57 ~~~~~g~e~~G~V~~~G~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~v~v~~~~~~~lP 136 (341)
T cd05281 57 PPLIFGHEFAGEVVEVGEGVTRVKVGDYVSAETHIVCGKCYQCRTGNYHVCQNTKILGVDTDGCFAEYVVVPEENLWKND 136 (341)
T ss_pred CCcccccceEEEEEEECCCCCCCCCCCEEEECCccCCCCChHHHCcCcccCcccceEeccCCCcceEEEEechHHcEECc
Confidence 4668999999998 5799998751 24889999999999999999
Q ss_pred CCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 62 ~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
++++++ ++++..++.++++++. ...++|++|+|+| +|++|++++|+|+.+|+ +|+
T Consensus 137 ~~~~~~-~a~~~~~~~~a~~~~~--~~~~~g~~vlV~g-~g~vg~~~~~la~~~G~~~v~ 192 (341)
T cd05281 137 KDIPPE-IASIQEPLGNAVHTVL--AGDVSGKSVLITG-CGPIGLMAIAVAKAAGASLVI 192 (341)
T ss_pred CCCCHH-HhhhhhHHHHHHHHHH--hcCCCCCEEEEEC-CCHHHHHHHHHHHHcCCcEEE
Confidence 999985 4467778888988874 4568999999987 69999999999999998 565
No 125
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=99.61 E-value=1.2e-14 Score=106.69 Aligned_cols=99 Identities=25% Similarity=0.354 Sum_probs=81.3
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEEc
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWEV 60 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~~ 60 (121)
.+|.++|||++|+| ++||+|++.. .+|+|+||+.++++.++++
T Consensus 56 ~~p~~~g~e~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~i 135 (341)
T PRK05396 56 PVPMVVGHEFVGEVVEVGSEVTGFKVGDRVSGEGHIVCGHCRNCRAGRRHLCRNTKGVGVNRPGAFAEYLVIPAFNVWKI 135 (341)
T ss_pred CCCcccceeeEEEEEEeCCCCCcCCCCCEEEECCCCCCCCChhhhCcChhhCCCcceeeecCCCcceeeEEechHHeEEC
Confidence 35678999999998 6899998751 3589999999999999999
Q ss_pred CCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 61 p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
|+++++++++.+ ..+.++++++.. ..++|++|+|+| +|++|++++|+|+++|+ +++
T Consensus 136 P~~l~~~~~~~~-~~~~~~~~~~~~--~~~~g~~vlV~~-~g~vg~~~~~la~~~G~~~v~ 192 (341)
T PRK05396 136 PDDIPDDLAAIF-DPFGNAVHTALS--FDLVGEDVLITG-AGPIGIMAAAVAKHVGARHVV 192 (341)
T ss_pred cCCCCHHHhHhh-hHHHHHHHHHHc--CCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCEEE
Confidence 999999888644 566666665532 346899999987 79999999999999998 454
No 126
>KOG1196|consensus
Probab=99.54 E-value=1.7e-13 Score=98.60 Aligned_cols=92 Identities=24% Similarity=0.277 Sum_probs=77.5
Q ss_pred ceEEEE--------ccCCEEEEEccCCceeEEEEeCCCC--eEEcCC--CCCHHH-HhhcchHHHHHHHHHHhhcCCCCC
Q psy3430 26 EFSGRD--------TKGRRVMGLVAARSLATTVLADPSF--LWEVPA--KWTLEE-ASTIPVVYATAYYSLIVRGKMRPG 92 (121)
Q Consensus 26 e~~G~V--------~~Gd~V~~~~~~g~~~~~~~v~~~~--~~~~p~--~~~~~~-aa~l~~~~~ta~~~l~~~~~~~~g 92 (121)
.++|+| ++||.|+++. +|.||.+++.+. .++++. +.++.. ..++..+.+|||..+++...+++|
T Consensus 78 ~GV~kVi~S~~~~~~~GD~v~g~~---gWeeysii~~~~~~~~ki~~~~~~pLs~ylg~lGm~glTAy~Gf~ei~~pk~g 154 (343)
T KOG1196|consen 78 FGVAKVIDSGHPNYKKGDLVWGIV---GWEEYSVITPNDLEHFKIQHPTDVPLSYYLGLLGMPGLTAYAGFYEICSPKKG 154 (343)
T ss_pred CceEEEEecCCCCCCcCceEEEec---cceEEEEecCcchhcccCCCCCccCHhhhhhccCCchhHHHHHHHHhcCCCCC
Confidence 456666 8999999986 699999998753 444443 444433 357889999999999999999999
Q ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 93 ESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 93 ~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++|+|.+|+|++|+.+.|+||.+||+|+
T Consensus 155 eTv~VSaAsGAvGql~GQ~Ak~~Gc~VV 182 (343)
T KOG1196|consen 155 ETVFVSAASGAVGQLVGQFAKLMGCYVV 182 (343)
T ss_pred CEEEEeeccchhHHHHHHHHHhcCCEEE
Confidence 9999999999999999999999999987
No 127
>PF08240 ADH_N: Alcohol dehydrogenase GroES-like domain; InterPro: IPR013154 This is the catalytic domain of alcohol dehydrogenases (1.1.1.1 from EC). Many of them contain an inserted zinc binding domain. This domain has a GroES-like structure; a name derived from the superfamily of proteins with a GroES fold. Proteins with a GroES fold structure have a highly conserved hydrophobic core and a glycyl-aspartate dipeptide which is thought to maintain the fold [, ].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1YKF_D 2NVB_A 3FSR_D 1BXZ_B 3FTN_A 3MEQ_D 3UOG_B 3HZZ_B 4DVJ_A 1P0F_A ....
Probab=98.64 E-value=5.3e-08 Score=60.85 Aligned_cols=44 Identities=25% Similarity=0.144 Sum_probs=35.6
Q ss_pred CCCCCccCcceEEEE----------ccCCEEEEEc---------------------------cCCceeEEEEeCCCCeEE
Q psy3430 17 AGQDCVLGLEFSGRD----------TKGRRVMGLV---------------------------AARSLATTVLADPSFLWE 59 (121)
Q Consensus 17 ~~~~~~~G~e~~G~V----------~~Gd~V~~~~---------------------------~~g~~~~~~~v~~~~~~~ 59 (121)
..+|.++|||++|+| ++||+|+... .+|+|+||+++++++++|
T Consensus 29 ~~~p~i~GhE~~G~V~~vG~~v~~~~~Gd~V~~~~~~~~~~c~~c~~~~~~~c~~~~~~g~~~~G~~aey~~v~~~~~~~ 108 (109)
T PF08240_consen 29 PKFPLILGHEGVGVVVAVGPGVTDFKVGDRVVVSPNIGCGECEYCLSGRPNLCPNPEVLGLGLDGGFAEYVVVPARNLVP 108 (109)
T ss_dssp SSSSEES-SEEEEEEEEESTTTTSSGTT-EEEEESEEETSSSHHHHTTTGGGTTTBEETTTSSTCSSBSEEEEEGGGEEE
T ss_pred CCCCcccccceeeeeeeeccccccccccceeeeecccCccCchhhcCCccccCCCCCEeEcCCCCcccCeEEEehHHEEE
Confidence 467899999999999 8999997632 149999999999999987
Q ss_pred c
Q psy3430 60 V 60 (121)
Q Consensus 60 ~ 60 (121)
+
T Consensus 109 v 109 (109)
T PF08240_consen 109 V 109 (109)
T ss_dssp E
T ss_pred C
Confidence 5
No 128
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.86 E-value=0.0019 Score=50.67 Aligned_cols=32 Identities=38% Similarity=0.391 Sum_probs=29.0
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
..++++|+|.| +|.+|+++++.|+.+|++|++
T Consensus 162 ~~pg~kVlViG-aG~iGL~Ai~~Ak~lGA~V~a 193 (509)
T PRK09424 162 KVPPAKVLVIG-AGVAGLAAIGAAGSLGAIVRA 193 (509)
T ss_pred CcCCCEEEEEC-CcHHHHHHHHHHHHCCCEEEE
Confidence 46899999999 899999999999999998763
No 129
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.75 E-value=0.0042 Score=47.57 Aligned_cols=44 Identities=14% Similarity=0.165 Sum_probs=35.6
Q ss_pred HHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 77 ATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 77 ~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
.+.+.++.+..++ .+|++|+|.| .|.+|+.+++.++.+|++|++
T Consensus 186 ~s~~~~i~r~t~~~l~GktVvViG-~G~IG~~va~~ak~~Ga~ViV 230 (413)
T cd00401 186 ESLIDGIKRATDVMIAGKVAVVAG-YGDVGKGCAQSLRGQGARVIV 230 (413)
T ss_pred hhhHHHHHHhcCCCCCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence 3445566555444 6899999999 899999999999999998874
No 130
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.71 E-value=0.007 Score=46.51 Aligned_cols=45 Identities=13% Similarity=0.186 Sum_probs=36.6
Q ss_pred HHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 76 YATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 76 ~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
....|.++.+..++. .|++|+|.| .|.+|+.+++.++.+|++|++
T Consensus 195 ~~s~~~ai~rat~~~l~Gk~VlViG-~G~IG~~vA~~lr~~Ga~ViV 240 (425)
T PRK05476 195 GESLLDGIKRATNVLIAGKVVVVAG-YGDVGKGCAQRLRGLGARVIV 240 (425)
T ss_pred HhhhHHHHHHhccCCCCCCEEEEEC-CCHHHHHHHHHHHhCCCEEEE
Confidence 345667775554554 899999999 899999999999999998864
No 131
>PRK08324 short chain dehydrogenase; Validated
Probab=96.46 E-value=0.0038 Score=50.50 Aligned_cols=64 Identities=25% Similarity=0.366 Sum_probs=47.8
Q ss_pred CceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHh--hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 44 RSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIV--RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 44 g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~--~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-++++|..+++..++.+ +..+.+++. +.+ ..+..+|+++||+|++|++|+.+++.+...|++|+
T Consensus 385 ~~~~~~~~l~~~~~f~i-~~~~~e~a~------------l~~~~~~~~l~gk~vLVTGasggIG~~la~~L~~~Ga~Vv 450 (681)
T PRK08324 385 EAVGRYEPLSEQEAFDI-EYWSLEQAK------------LQRMPKPKPLAGKVALVTGAAGGIGKATAKRLAAEGACVV 450 (681)
T ss_pred hhcCCccCCChhhhcce-eeehhhhhh------------hhcCCCCcCCCCCEEEEecCCCHHHHHHHHHHHHCcCEEE
Confidence 35678888888777777 556666663 111 12234689999999999999999999999999876
No 132
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=96.14 E-value=0.016 Score=44.30 Aligned_cols=44 Identities=18% Similarity=0.252 Sum_probs=35.2
Q ss_pred HHHHHHHHhhcC-CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 77 ATAYYSLIVRGK-MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 77 ~ta~~~l~~~~~-~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
.+.+.++.+..+ ..+|++|+|.| .|.+|+.+++.++.+|++|++
T Consensus 179 ~s~~~~i~r~t~~~l~Gk~VvViG-~G~IG~~vA~~ak~~Ga~ViV 223 (406)
T TIGR00936 179 QSTIDGILRATNLLIAGKTVVVAG-YGWCGKGIAMRARGMGARVIV 223 (406)
T ss_pred hhHHHHHHHhcCCCCCcCEEEEEC-CCHHHHHHHHHHhhCcCEEEE
Confidence 344555545444 46899999999 899999999999999999874
No 133
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.03 E-value=0.0067 Score=46.47 Aligned_cols=37 Identities=32% Similarity=0.540 Sum_probs=33.2
Q ss_pred hhcCCCCCCEEE----EecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 85 VRGKMRPGESLL----VHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 85 ~~~~~~~g~~vl----i~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
++.++++|+++| |++|+|++|.+++|+++..|++|++
T Consensus 27 ~l~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~g~~v~~ 67 (450)
T PRK08261 27 PLRRYRPGQPLLDGPVLVGGAGRLAEALAALLAGLGYDVVA 67 (450)
T ss_pred cccCCCCCCCCCCCceEEccCchhHHHHHHHHhhCCCeeee
Confidence 457788999998 9999999999999999999999863
No 134
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=95.77 E-value=0.019 Score=45.41 Aligned_cols=33 Identities=24% Similarity=0.235 Sum_probs=29.4
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
..++|++|+|.| +|+.|+.+++.++.+|++|++
T Consensus 133 ~~~~g~~V~VIG-aGpaGL~aA~~l~~~G~~V~v 165 (564)
T PRK12771 133 APDTGKRVAVIG-GGPAGLSAAYHLRRMGHAVTI 165 (564)
T ss_pred CCCCCCEEEEEC-CCHHHHHHHHHHHHCCCeEEE
Confidence 467899999999 899999999999999998763
No 135
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=95.49 E-value=0.094 Score=38.43 Aligned_cols=30 Identities=23% Similarity=0.308 Sum_probs=27.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
.+++++|.| .|.+|+.+++.++.+|++|++
T Consensus 151 ~g~kvlViG-~G~iG~~~a~~L~~~Ga~V~v 180 (296)
T PRK08306 151 HGSNVLVLG-FGRTGMTLARTLKALGANVTV 180 (296)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCCEEEE
Confidence 689999999 799999999999999998763
No 136
>PRK07831 short chain dehydrogenase; Provisional
Probab=95.48 E-value=0.027 Score=39.73 Aligned_cols=32 Identities=41% Similarity=0.608 Sum_probs=28.0
Q ss_pred CCCCCEEEEecCCc-hHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAG-GLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g-~vG~~aiqla~~~G~~vi 120 (121)
+.++++++|+|++| ++|..+++.+...|++|+
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~ 46 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVV 46 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEE
Confidence 44678999999986 899999999999999876
No 137
>PLN02494 adenosylhomocysteinase
Probab=95.46 E-value=0.043 Score=42.81 Aligned_cols=42 Identities=14% Similarity=0.208 Sum_probs=34.1
Q ss_pred HHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 79 AYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 79 a~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
.+.++.+..++ -.|++++|.| .|.+|+.+++.++.+|++|++
T Consensus 240 ~~d~i~r~t~i~LaGKtVvViG-yG~IGr~vA~~aka~Ga~VIV 282 (477)
T PLN02494 240 LPDGLMRATDVMIAGKVAVICG-YGDVGKGCAAAMKAAGARVIV 282 (477)
T ss_pred HHHHHHHhcCCccCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence 35555455444 6799999999 899999999999999999874
No 138
>PRK12367 short chain dehydrogenase; Provisional
Probab=95.41 E-value=0.029 Score=39.72 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=27.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+++++|+||+|++|...++.....|++|+
T Consensus 13 ~~k~~lITGas~gIG~ala~~l~~~G~~Vi 42 (245)
T PRK12367 13 QGKRIGITGASGALGKALTKAFRAKGAKVI 42 (245)
T ss_pred CCCEEEEEcCCcHHHHHHHHHHHHCCCEEE
Confidence 467999999999999999998888999876
No 139
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=95.32 E-value=0.03 Score=44.68 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=32.7
Q ss_pred HHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 82 SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 82 ~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.-+..+.+.|++++|+||+|++|..+++.+...|++|+
T Consensus 70 ~~~~~~~~~~gKvVLVTGATGgIG~aLAr~LLk~G~~Vv 108 (576)
T PLN03209 70 AIPKELDTKDEDLAFVAGATGKVGSRTVRELLKLGFRVR 108 (576)
T ss_pred ccccccccCCCCEEEEECCCCHHHHHHHHHHHHCCCeEE
Confidence 333456677899999999999999999999888899875
No 140
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.29 E-value=0.034 Score=39.14 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=27.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.++||+||++++|...++.....|++|+
T Consensus 14 ~~k~vlItGas~gIG~~ia~~l~~~G~~v~ 43 (258)
T PRK06935 14 DGKVAIVTGGNTGLGQGYAVALAKAGADII 43 (258)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 578999999999999999999988999875
No 141
>PRK05866 short chain dehydrogenase; Provisional
Probab=95.18 E-value=0.038 Score=40.07 Aligned_cols=30 Identities=30% Similarity=0.510 Sum_probs=26.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+++|+||+|++|...++.+...|++|+
T Consensus 39 ~~k~vlItGasggIG~~la~~La~~G~~Vi 68 (293)
T PRK05866 39 TGKRILLTGASSGIGEAAAEQFARRGATVV 68 (293)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence 457899999999999999998888899876
No 142
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.17 E-value=0.17 Score=39.63 Aligned_cols=63 Identities=14% Similarity=0.148 Sum_probs=41.0
Q ss_pred eEEcCCCCCHHHHh-hcchHHHHHHHHHHhhcC-CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 57 LWEVPAKWTLEEAS-TIPVVYATAYYSLIVRGK-MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 57 ~~~~p~~~~~~~aa-~l~~~~~ta~~~l~~~~~-~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
+..+|+..+...+- .+.+ ..+.+..+.+..+ .-.|++++|.| .|.+|+.+++.++.+|++|++
T Consensus 218 V~nv~d~~tk~~aD~~~G~-~~s~~d~~~R~~~~~LaGKtVgVIG-~G~IGr~vA~rL~a~Ga~ViV 282 (476)
T PTZ00075 218 AINVNDSVTKSKFDNIYGC-RHSLIDGIFRATDVMIAGKTVVVCG-YGDVGKGCAQALRGFGARVVV 282 (476)
T ss_pred EEEeCCcchHHHHHHHHHH-HHHHHHHHHHhcCCCcCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence 45556654433221 2222 2233344434433 45799999999 899999999999999999863
No 143
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.16 E-value=0.046 Score=37.27 Aligned_cols=30 Identities=30% Similarity=0.477 Sum_probs=25.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++.+++|.|++|++|+.+++.+...|++|+
T Consensus 27 ~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~ 56 (194)
T cd01078 27 KGKTAVVLGGTGPVGQRAAVLLAREGARVV 56 (194)
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHCCCEEE
Confidence 568999999999999998888888888765
No 144
>PRK06841 short chain dehydrogenase; Provisional
Probab=95.14 E-value=0.04 Score=38.54 Aligned_cols=30 Identities=30% Similarity=0.492 Sum_probs=26.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++.++||+||+|++|...++.+...|++|+
T Consensus 14 ~~k~vlItGas~~IG~~la~~l~~~G~~Vi 43 (255)
T PRK06841 14 SGKVAVVTGGASGIGHAIAELFAAKGARVA 43 (255)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence 467999999999999999998888899876
No 145
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=94.95 E-value=0.051 Score=36.73 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=27.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
-.|.+|.|.| .|.+|+..++.++.+|++|++
T Consensus 34 l~g~tvgIiG-~G~IG~~vA~~l~~fG~~V~~ 64 (178)
T PF02826_consen 34 LRGKTVGIIG-YGRIGRAVARRLKAFGMRVIG 64 (178)
T ss_dssp STTSEEEEES-TSHHHHHHHHHHHHTT-EEEE
T ss_pred cCCCEEEEEE-EcCCcCeEeeeeecCCceeEE
Confidence 3689999999 999999999999999999873
No 146
>PRK06128 oxidoreductase; Provisional
Probab=94.93 E-value=0.044 Score=39.68 Aligned_cols=30 Identities=20% Similarity=0.377 Sum_probs=27.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.++||+|+++++|..+++.....|++|+
T Consensus 54 ~~k~vlITGas~gIG~~~a~~l~~~G~~V~ 83 (300)
T PRK06128 54 QGRKALITGADSGIGRATAIAFAREGADIA 83 (300)
T ss_pred CCCEEEEecCCCcHHHHHHHHHHHcCCEEE
Confidence 468999999999999999999888999875
No 147
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=94.91 E-value=0.051 Score=38.19 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=27.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++.++||+|++|++|...++.....|++|+
T Consensus 11 ~~k~ilItGa~g~IG~~la~~l~~~G~~V~ 40 (259)
T PRK08213 11 SGKTALVTGGSRGLGLQIAEALGEAGARVV 40 (259)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEE
Confidence 468999999999999999999888999876
No 148
>PLN02780 ketoreductase/ oxidoreductase
Probab=94.89 E-value=0.042 Score=40.48 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=26.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|++++|+||++++|...++.....|++|+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~~Vi 81 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGLNLV 81 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCCCEE
Confidence 589999999999999999988878899876
No 149
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=94.86 E-value=0.046 Score=43.04 Aligned_cols=31 Identities=39% Similarity=0.433 Sum_probs=27.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
.++++++|.| .|.+|++++++++.+|++|++
T Consensus 162 vp~akVlViG-aG~iGl~Aa~~ak~lGA~V~v 192 (511)
T TIGR00561 162 VPPAKVLVIG-AGVAGLAAIGAANSLGAIVRA 192 (511)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence 3579999999 899999999999999998763
No 150
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=94.85 E-value=0.057 Score=40.00 Aligned_cols=42 Identities=26% Similarity=0.286 Sum_probs=33.0
Q ss_pred HHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 78 TAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 78 ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
|||--|+....+ +..+|||+||+|-+|..+++.+...|.+|+
T Consensus 2 ~~~~~~~~~~~~-~~~~vlVtGatGfiG~~lv~~L~~~g~~V~ 43 (348)
T PRK15181 2 TAYEELRTKLVL-APKRWLITGVAGFIGSGLLEELLFLNQTVI 43 (348)
T ss_pred chhhhhhhcccc-cCCEEEEECCccHHHHHHHHHHHHCCCEEE
Confidence 566666444444 347899999999999999999998898875
No 151
>PRK05854 short chain dehydrogenase; Provisional
Probab=94.82 E-value=0.053 Score=39.67 Aligned_cols=30 Identities=23% Similarity=0.348 Sum_probs=27.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+++|+||++++|...++.+...|++|+
T Consensus 13 ~gk~~lITGas~GIG~~~a~~La~~G~~Vi 42 (313)
T PRK05854 13 SGKRAVVTGASDGLGLGLARRLAAAGAEVI 42 (313)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCCEEE
Confidence 478999999999999999998888899886
No 152
>PRK06197 short chain dehydrogenase; Provisional
Probab=94.81 E-value=0.048 Score=39.55 Aligned_cols=30 Identities=23% Similarity=0.333 Sum_probs=26.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+++|+||+|++|..+++.....|++|+
T Consensus 15 ~~k~vlItGas~gIG~~~a~~l~~~G~~vi 44 (306)
T PRK06197 15 SGRVAVVTGANTGLGYETAAALAAKGAHVV 44 (306)
T ss_pred CCCEEEEcCCCCcHHHHHHHHHHHCCCEEE
Confidence 568999999999999999998888899875
No 153
>PLN02253 xanthoxin dehydrogenase
Probab=94.81 E-value=0.055 Score=38.54 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=26.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+++|+|++|++|...++.....|++|+
T Consensus 17 ~~k~~lItGas~gIG~~la~~l~~~G~~v~ 46 (280)
T PLN02253 17 LGKVALVTGGATGIGESIVRLFHKHGAKVC 46 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHcCCEEE
Confidence 467899999999999999988888899876
No 154
>PRK06196 oxidoreductase; Provisional
Probab=94.79 E-value=0.054 Score=39.52 Aligned_cols=30 Identities=27% Similarity=0.467 Sum_probs=26.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+++|+||+|++|..+++.....|++|+
T Consensus 25 ~~k~vlITGasggIG~~~a~~L~~~G~~Vv 54 (315)
T PRK06196 25 SGKTAIVTGGYSGLGLETTRALAQAGAHVI 54 (315)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEE
Confidence 468999999999999999998888899876
No 155
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=94.75 E-value=0.057 Score=37.69 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=28.6
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
...++.+++|+|++|++|...++.+...|++|+
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi 40 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGATVI 40 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCcEE
Confidence 345788999999999999999988888898876
No 156
>PRK07985 oxidoreductase; Provisional
Probab=94.67 E-value=0.057 Score=39.10 Aligned_cols=30 Identities=30% Similarity=0.396 Sum_probs=27.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++.+++|+||++++|...++.+...|++|+
T Consensus 48 ~~k~vlITGas~gIG~aia~~L~~~G~~Vi 77 (294)
T PRK07985 48 KDRKALVTGGDSGIGRAAAIAYAREGADVA 77 (294)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEE
Confidence 567999999999999999999888999876
No 157
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=94.63 E-value=0.01 Score=43.68 Aligned_cols=64 Identities=17% Similarity=0.154 Sum_probs=44.1
Q ss_pred CCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCC---CCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 55 SFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKM---RPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 55 ~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~---~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
+..+++|+.++.+.+... .+...+++++...... .++++|+|.| +|.+|..+++.++..|+ +|+
T Consensus 139 ~~a~~~~k~vr~et~i~~-~~~sv~~~Av~~a~~~~~~l~~~~V~ViG-aG~iG~~~a~~L~~~g~~~V~ 206 (311)
T cd05213 139 QKAIKVGKRVRTETGISR-GAVSISSAAVELAEKIFGNLKGKKVLVIG-AGEMGELAAKHLAAKGVAEIT 206 (311)
T ss_pred HHHHHHHHHHhhhcCCCC-CCcCHHHHHHHHHHHHhCCccCCEEEEEC-cHHHHHHHHHHHHHcCCCEEE
Confidence 345677888777766443 3455666665322221 4789999999 79999999999988876 443
No 158
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=94.42 E-value=0.073 Score=40.77 Aligned_cols=30 Identities=30% Similarity=0.460 Sum_probs=26.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++++++|+||+|++|...++.....|++|+
T Consensus 177 ~gK~VLITGASgGIG~aLA~~La~~G~~Vi 206 (406)
T PRK07424 177 KGKTVAVTGASGTLGQALLKELHQQGAKVV 206 (406)
T ss_pred CCCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence 478999999999999999998888899876
No 159
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=94.40 E-value=0.099 Score=42.50 Aligned_cols=64 Identities=23% Similarity=0.340 Sum_probs=42.5
Q ss_pred eeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 46 LATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 46 ~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+|.-+++...+.+ +..+.+++=.-.. ...+.-.++++||+|++|++|..+++.....|++|+
T Consensus 379 ~~~~~~~~~~~~f~~-eyw~~e~~kl~~~----------~~~~~l~gkvvLVTGasggIG~aiA~~La~~Ga~Vv 442 (676)
T TIGR02632 379 VSEYVSLPEQEAFDI-EYWPLEEAKLRRM----------PKEKTLARRVAFVTGGAGGIGRETARRLAAEGAHVV 442 (676)
T ss_pred ccceecCchhhccch-hhhhhhHHhhccC----------CCCcCCCCCEEEEeCCCcHHHHHHHHHHHhCCCEEE
Confidence 456666777666666 4444455511000 001112478999999999999999998888899876
No 160
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.33 E-value=0.085 Score=40.43 Aligned_cols=30 Identities=30% Similarity=0.441 Sum_probs=27.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++++++|+|++|++|...++.+...|++|+
T Consensus 209 ~g~~vlItGasggIG~~la~~l~~~Ga~vi 238 (450)
T PRK08261 209 AGKVALVTGAARGIGAAIAEVLARDGAHVV 238 (450)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCCCEEE
Confidence 578999999999999999999999999876
No 161
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=94.04 E-value=0.15 Score=36.29 Aligned_cols=78 Identities=21% Similarity=0.217 Sum_probs=49.1
Q ss_pred ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHH
Q psy3430 32 TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISI 111 (121)
Q Consensus 32 ~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiql 111 (121)
++||+++... +|.+|.. +...+.++++++++..+. .+.+.. ....+.+ .+.++++||-.| +|. |..++.+
T Consensus 68 ~~g~~~~i~p---~~~~~~~-~~~~~i~i~p~~afgtg~-h~tt~~-~l~~l~~--~~~~~~~VLDiG-cGs-G~l~i~~ 137 (250)
T PRK00517 68 RIGDRLWIVP---SWEDPPD-PDEINIELDPGMAFGTGT-HPTTRL-CLEALEK--LVLPGKTVLDVG-CGS-GILAIAA 137 (250)
T ss_pred EEcCCEEEEC---CCcCCCC-CCeEEEEECCCCccCCCC-CHHHHH-HHHHHHh--hcCCCCEEEEeC-CcH-HHHHHHH
Confidence 6788876553 5777755 677889999988876542 222211 1222211 256889999998 665 8777765
Q ss_pred HHHCCC-EEe
Q psy3430 112 ALHMGC-TVY 120 (121)
Q Consensus 112 a~~~G~-~vi 120 (121)
++ .|+ +|+
T Consensus 138 ~~-~g~~~v~ 146 (250)
T PRK00517 138 AK-LGAKKVL 146 (250)
T ss_pred HH-cCCCeEE
Confidence 54 565 354
No 162
>KOG1201|consensus
Probab=94.04 E-value=0.093 Score=38.54 Aligned_cols=30 Identities=27% Similarity=0.443 Sum_probs=25.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|+.|||+|+++|+|+..++=...+|++++
T Consensus 37 ~g~~vLITGgg~GlGr~ialefa~rg~~~v 66 (300)
T KOG1201|consen 37 SGEIVLITGGGSGLGRLIALEFAKRGAKLV 66 (300)
T ss_pred cCCEEEEeCCCchHHHHHHHHHHHhCCeEE
Confidence 689999999999999988877777787653
No 163
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=94.01 E-value=0.1 Score=36.75 Aligned_cols=30 Identities=20% Similarity=0.331 Sum_probs=26.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+|+|+||+|.+|..+++.+...|.+|+
T Consensus 16 ~~~~ilItGasG~iG~~l~~~L~~~g~~V~ 45 (251)
T PLN00141 16 KTKTVFVAGATGRTGKRIVEQLLAKGFAVK 45 (251)
T ss_pred cCCeEEEECCCcHHHHHHHHHHHhCCCEEE
Confidence 357899999999999999988888888875
No 164
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.99 E-value=0.11 Score=37.90 Aligned_cols=30 Identities=33% Similarity=0.461 Sum_probs=26.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+++|+|+++++|...++.....|++|+
T Consensus 11 ~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv 40 (306)
T PRK07792 11 SGKVAVVTGAAAGLGRAEALGLARLGATVV 40 (306)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEE
Confidence 567899999999999999988888899876
No 165
>PLN02572 UDP-sulfoquinovose synthase
Probab=93.97 E-value=0.093 Score=40.48 Aligned_cols=31 Identities=23% Similarity=0.192 Sum_probs=27.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.++.+|||+||+|.+|..+++.+...|.+|+
T Consensus 45 ~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~ 75 (442)
T PLN02572 45 SKKKKVMVIGGDGYCGWATALHLSKRGYEVA 75 (442)
T ss_pred ccCCEEEEECCCcHHHHHHHHHHHHCCCeEE
Confidence 3568899999999999999999988898776
No 166
>PRK06701 short chain dehydrogenase; Provisional
Probab=93.79 E-value=0.12 Score=37.31 Aligned_cols=30 Identities=23% Similarity=0.480 Sum_probs=26.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++.++||+||+|++|...++.....|++|+
T Consensus 45 ~~k~iLItGasggIG~~la~~l~~~G~~V~ 74 (290)
T PRK06701 45 KGKVALITGGDSGIGRAVAVLFAKEGADIA 74 (290)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEE
Confidence 578999999999999999988888899875
No 167
>PLN02686 cinnamoyl-CoA reductase
Probab=93.78 E-value=0.12 Score=38.80 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=28.3
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
...+++|||+||+|.+|..+++.+...|.+|+
T Consensus 50 ~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~ 81 (367)
T PLN02686 50 DAEARLVCVTGGVSFLGLAIVDRLLRHGYSVR 81 (367)
T ss_pred CCCCCEEEEECCchHHHHHHHHHHHHCCCEEE
Confidence 35678999999999999999999988899875
No 168
>PLN02206 UDP-glucuronate decarboxylase
Probab=93.71 E-value=0.12 Score=40.02 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=27.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++.+|||+||+|-+|..+++.+...|.+|+
T Consensus 118 ~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~ 147 (442)
T PLN02206 118 KGLRVVVTGGAGFVGSHLVDRLMARGDSVI 147 (442)
T ss_pred CCCEEEEECcccHHHHHHHHHHHHCcCEEE
Confidence 568999999999999999999998898876
No 169
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.62 E-value=0.12 Score=34.48 Aligned_cols=27 Identities=37% Similarity=0.540 Sum_probs=23.3
Q ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 93 ESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 93 ~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-+|+|.| +|.+|+.|+++++.+|++|+
T Consensus 21 ~~vvv~G-~G~vg~gA~~~~~~lGa~v~ 47 (168)
T PF01262_consen 21 AKVVVTG-AGRVGQGAAEIAKGLGAEVV 47 (168)
T ss_dssp -EEEEES-TSHHHHHHHHHHHHTT-EEE
T ss_pred eEEEEEC-CCHHHHHHHHHHhHCCCEEE
Confidence 6789998 89999999999999999875
No 170
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=93.60 E-value=0.32 Score=32.73 Aligned_cols=43 Identities=16% Similarity=0.250 Sum_probs=30.0
Q ss_pred HHHHHHHhhcC-CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 78 TAYYSLIVRGK-MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 78 ta~~~l~~~~~-~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
+.+.++.+..+ .-.|++++|.| -|-+|.-.++.++.+|++|++
T Consensus 8 S~~d~i~r~t~~~l~Gk~vvV~G-YG~vG~g~A~~lr~~Ga~V~V 51 (162)
T PF00670_consen 8 SLVDGIMRATNLMLAGKRVVVIG-YGKVGKGIARALRGLGARVTV 51 (162)
T ss_dssp HHHHHHHHHH-S--TTSEEEEE---SHHHHHHHHHHHHTT-EEEE
T ss_pred hHHHHHHhcCceeeCCCEEEEeC-CCcccHHHHHHHhhCCCEEEE
Confidence 34445544444 45899999999 999999999999999999874
No 171
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=93.59 E-value=0.21 Score=28.91 Aligned_cols=30 Identities=33% Similarity=0.405 Sum_probs=26.4
Q ss_pred CCCEEEEecCC-chHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGA-GGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~-g~vG~~aiqla~~~G~~vi 120 (121)
..+.+||+|++ .+...++.+.|+..|..++
T Consensus 31 ~~~~~lvhGga~~GaD~iA~~wA~~~gv~~~ 61 (71)
T PF10686_consen 31 HPDMVLVHGGAPKGADRIAARWARERGVPVI 61 (71)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHCCCeeE
Confidence 36788999998 8999999999999998654
No 172
>PRK06720 hypothetical protein; Provisional
Probab=93.45 E-value=0.17 Score=33.97 Aligned_cols=30 Identities=23% Similarity=0.442 Sum_probs=26.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++..++|+||++++|...+......|++|+
T Consensus 15 ~gk~~lVTGa~~GIG~aia~~l~~~G~~V~ 44 (169)
T PRK06720 15 AGKVAIVTGGGIGIGRNTALLLAKQGAKVI 44 (169)
T ss_pred CCCEEEEecCCChHHHHHHHHHHHCCCEEE
Confidence 578999999999999999988888898875
No 173
>KOG1205|consensus
Probab=93.40 E-value=0.15 Score=37.29 Aligned_cols=29 Identities=21% Similarity=0.429 Sum_probs=24.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTV 119 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~v 119 (121)
.++.|+|+||++|+|..++.-.-..|+++
T Consensus 11 ~~kvVvITGASsGIG~~lA~~la~~G~~l 39 (282)
T KOG1205|consen 11 AGKVVLITGASSGIGEALAYELAKRGAKL 39 (282)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHhCCCce
Confidence 57889999999999998887777778853
No 174
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=93.13 E-value=0.31 Score=37.35 Aligned_cols=54 Identities=26% Similarity=0.236 Sum_probs=40.4
Q ss_pred CHHHHhhcchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 65 TLEEASTIPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 65 ~~~~aa~l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
..++|....+...+- .++ +..+. -.|.+|.|.| .|.+|+.+++.+...|++|++
T Consensus 181 ~r~~aTg~Gv~~~~~-~a~-~~~g~~l~G~rVaVQG-~GNVg~~aa~~l~~~GAkvva 235 (411)
T COG0334 181 GRSEATGYGVFYAIR-EAL-KALGDDLEGARVAVQG-FGNVGQYAAEKLHELGAKVVA 235 (411)
T ss_pred CCCcccceehHHHHH-HHH-HHcCCCcCCCEEEEEC-ccHHHHHHHHHHHHcCCEEEE
Confidence 344566666655555 455 33333 4899999999 999999999999888999874
No 175
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=93.12 E-value=0.2 Score=37.95 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=29.0
Q ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+-..+.+|+|+||+|.+|..+++.+...|.+|+
T Consensus 55 ~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~ 88 (390)
T PLN02657 55 SKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVV 88 (390)
T ss_pred ccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence 4455678999999999999999998888888775
No 176
>PRK06484 short chain dehydrogenase; Validated
Probab=93.11 E-value=0.18 Score=39.27 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=27.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.++++||+||++++|...++.....|++|+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~ 297 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLL 297 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEE
Confidence 578899999999999999999888999886
No 177
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=92.67 E-value=0.22 Score=38.44 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=27.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++..+|||+||+|-+|..+++.+...|.+|+
T Consensus 118 ~~~mkILVTGatGFIGs~Lv~~Ll~~G~~V~ 148 (436)
T PLN02166 118 RKRLRIVVTGGAGFVGSHLVDKLIGRGDEVI 148 (436)
T ss_pred cCCCEEEEECCccHHHHHHHHHHHHCCCEEE
Confidence 3567899999999999999999988898876
No 178
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.57 E-value=0.7 Score=31.16 Aligned_cols=49 Identities=22% Similarity=0.221 Sum_probs=33.3
Q ss_pred hcchHHHHHHHHHHhhcCCCCCCEEEEecCCch-HHHHHHHHHHHCCCEEe
Q psy3430 71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGG-LGQAAISIALHMGCTVY 120 (121)
Q Consensus 71 ~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~-vG~~aiqla~~~G~~vi 120 (121)
..|+....+...+.+...--.+.+++|.|+ |. +|..+++.++..|++|.
T Consensus 23 ~~p~~~~a~v~l~~~~~~~l~gk~vlViG~-G~~~G~~~a~~L~~~g~~V~ 72 (168)
T cd01080 23 FIPCTPAGILELLKRYGIDLAGKKVVVVGR-SNIVGKPLAALLLNRNATVT 72 (168)
T ss_pred ccCChHHHHHHHHHHcCCCCCCCEEEEECC-cHHHHHHHHHHHhhCCCEEE
Confidence 344444444444433433457899999995 65 69999999999998764
No 179
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=92.56 E-value=0.21 Score=37.78 Aligned_cols=28 Identities=25% Similarity=0.335 Sum_probs=24.4
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.+|+|.| +|.+|+.+++.++.+|++|+
T Consensus 167 ~~~VlViG-aG~vG~~aa~~a~~lGa~V~ 194 (370)
T TIGR00518 167 PGDVTIIG-GGVVGTNAAKMANGLGATVT 194 (370)
T ss_pred CceEEEEc-CCHHHHHHHHHHHHCCCeEE
Confidence 34588998 79999999999999999875
No 180
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=92.42 E-value=0.46 Score=34.72 Aligned_cols=29 Identities=21% Similarity=0.369 Sum_probs=26.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|++++|.| .|.+|..+++.++.+|++|+
T Consensus 150 ~gk~v~IiG-~G~iG~avA~~L~~~G~~V~ 178 (287)
T TIGR02853 150 HGSNVMVLG-FGRTGMTIARTFSALGARVF 178 (287)
T ss_pred CCCEEEEEc-ChHHHHHHHHHHHHCCCEEE
Confidence 578999999 79999999999999999875
No 181
>PF12242 Eno-Rase_NADH_b: NAD(P)H binding domain of trans-2-enoyl-CoA reductase; PDB: 3ZU5_A 3ZU3_A 3ZU4_A 3ZU2_A 3S8M_A.
Probab=92.38 E-value=0.56 Score=27.60 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=18.2
Q ss_pred cCCCCCCEEEEecCCchHHHHHHHHH-HHCCCEE
Q psy3430 87 GKMRPGESLLVHAGAGGLGQAAISIA-LHMGCTV 119 (121)
Q Consensus 87 ~~~~~g~~vli~ga~g~vG~~aiqla-~~~G~~v 119 (121)
..++-.++|||.|++++.|++.--.+ -..|++.
T Consensus 34 ~~~~GpK~VLViGaStGyGLAsRIa~aFg~gA~T 67 (78)
T PF12242_consen 34 GKINGPKKVLVIGASTGYGLASRIAAAFGAGADT 67 (78)
T ss_dssp ---TS-SEEEEES-SSHHHHHHHHHHHHCC--EE
T ss_pred CCCCCCceEEEEecCCcccHHHHHHHHhcCCCCE
Confidence 44533489999999999999754333 2445554
No 182
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.16 E-value=0.29 Score=36.75 Aligned_cols=31 Identities=6% Similarity=0.007 Sum_probs=27.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+.+|||+|++|-+|..++..+...|.+|+
T Consensus 19 ~~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~ 49 (370)
T PLN02695 19 SEKLRICITGAGGFIASHIARRLKAEGHYII 49 (370)
T ss_pred CCCCEEEEECCccHHHHHHHHHHHhCCCEEE
Confidence 3668999999999999999999998898775
No 183
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.06 E-value=0.72 Score=33.84 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=36.0
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++....+..+ +..++ -.|.+++|.|++.-+|.-+.+++...|++|+
T Consensus 138 ~PcTp~ai~~ll-~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt 186 (286)
T PRK14175 138 VPCTPLGIMEIL-KHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT 186 (286)
T ss_pred CCCcHHHHHHHH-HHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE
Confidence 455555555555 33333 4789999999777799999999999999886
No 184
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=91.99 E-value=0.68 Score=36.09 Aligned_cols=30 Identities=27% Similarity=0.510 Sum_probs=28.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-+|.+|.|.| .|.+|..+++.+..+|++|+
T Consensus 235 l~Gk~VaVqG-~GnVg~~aa~~L~e~GakVV 264 (454)
T PTZ00079 235 LEGKTVVVSG-SGNVAQYAVEKLLQLGAKVL 264 (454)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 4789999999 89999999999999999987
No 185
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=91.87 E-value=0.83 Score=32.94 Aligned_cols=30 Identities=23% Similarity=0.389 Sum_probs=27.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-+|.+|.|.| .|.+|+.+++++..+|++|+
T Consensus 36 l~g~~vaIqG-fGnVG~~~a~~L~e~Gakvv 65 (254)
T cd05313 36 LKGKRVAISG-SGNVAQYAAEKLLELGAKVV 65 (254)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 3688999999 89999999999999999987
No 186
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=91.82 E-value=0.24 Score=38.02 Aligned_cols=45 Identities=18% Similarity=0.228 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhhcC---CCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 75 VYATAYYSLIVRGK---MRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 75 ~~~ta~~~l~~~~~---~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
+...+++++..... -.++++|+|.| +|.+|..+++.++..|+ +|+
T Consensus 162 ~~Sv~~~Av~~a~~~~~~~~~~~vlViG-aG~iG~~~a~~L~~~G~~~V~ 210 (423)
T PRK00045 162 AVSVASAAVELAKQIFGDLSGKKVLVIG-AGEMGELVAKHLAEKGVRKIT 210 (423)
T ss_pred CcCHHHHHHHHHHHhhCCccCCEEEEEC-chHHHHHHHHHHHHCCCCeEE
Confidence 44455555532221 25789999999 79999999999999997 554
No 187
>PRK14031 glutamate dehydrogenase; Provisional
Probab=91.68 E-value=0.77 Score=35.74 Aligned_cols=31 Identities=29% Similarity=0.386 Sum_probs=28.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
-+|.+|+|.| .|.+|..+++.+...|++|++
T Consensus 226 l~g~rVaVQG-fGNVG~~aA~~L~e~GAkVVa 256 (444)
T PRK14031 226 LKGKVCLVSG-SGNVAQYTAEKVLELGGKVVT 256 (444)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence 3689999999 899999999999999999874
No 188
>PRK14030 glutamate dehydrogenase; Provisional
Probab=91.62 E-value=0.78 Score=35.71 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=28.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
-+|.+|.|.| .|.+|+.+++.+..+|++|++
T Consensus 226 l~g~~vaIQG-fGnVG~~aA~~L~e~GakvVa 256 (445)
T PRK14030 226 IKGKTVAISG-FGNVAWGAATKATELGAKVVT 256 (445)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence 3689999999 999999999999999999874
No 189
>PRK07201 short chain dehydrogenase; Provisional
Probab=91.50 E-value=0.33 Score=38.87 Aligned_cols=29 Identities=28% Similarity=0.580 Sum_probs=26.2
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.+++|+||+|++|...++.....|++|+
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~G~~V~ 399 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEAGATVF 399 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEE
Confidence 67899999999999999988888899876
No 190
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=91.22 E-value=1.2 Score=30.71 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=27.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
-.|.+++|.| .|.+|..+++.+...|++|++
T Consensus 26 l~gk~v~I~G-~G~vG~~~A~~L~~~G~~Vvv 56 (200)
T cd01075 26 LEGKTVAVQG-LGKVGYKLAEHLLEEGAKLIV 56 (200)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence 3678999999 789999999999999998863
No 191
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=91.08 E-value=0.4 Score=35.38 Aligned_cols=30 Identities=23% Similarity=0.344 Sum_probs=27.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
.|.++.|.| .|.+|+..+++++.+|++|++
T Consensus 144 ~gktvGIiG-~G~IG~~vA~~~~~fgm~V~~ 173 (311)
T PRK08410 144 KGKKWGIIG-LGTIGKRVAKIAQAFGAKVVY 173 (311)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhhcCCEEEE
Confidence 578999999 999999999999999999873
No 192
>PRK05855 short chain dehydrogenase; Validated
Probab=91.00 E-value=0.41 Score=37.38 Aligned_cols=30 Identities=20% Similarity=0.374 Sum_probs=26.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.++||+||+|++|...++-+...|++|+
T Consensus 314 ~~~~~lv~G~s~giG~~~a~~l~~~G~~v~ 343 (582)
T PRK05855 314 SGKLVVVTGAGSGIGRETALAFAREGAEVV 343 (582)
T ss_pred CCCEEEEECCcCHHHHHHHHHHHHCCCEEE
Confidence 457899999999999999988888899876
No 193
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=90.94 E-value=1.2 Score=31.21 Aligned_cols=30 Identities=20% Similarity=0.229 Sum_probs=27.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-.|.+|+|.| .|.+|+.+++++..+|++++
T Consensus 21 l~g~~vaIqG-fGnVG~~~a~~L~~~G~~vV 50 (217)
T cd05211 21 LEGLTVAVQG-LGNVGWGLAKKLAEEGGKVL 50 (217)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence 3688999999 99999999999999998765
No 194
>PRK06932 glycerate dehydrogenase; Provisional
Probab=90.90 E-value=0.39 Score=35.53 Aligned_cols=29 Identities=31% Similarity=0.413 Sum_probs=26.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|.++.|.| .|.+|+..+++++.+|++|+
T Consensus 146 ~gktvgIiG-~G~IG~~va~~l~~fg~~V~ 174 (314)
T PRK06932 146 RGSTLGVFG-KGCLGTEVGRLAQALGMKVL 174 (314)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhcCCCEEE
Confidence 478999999 99999999999999999986
No 195
>PLN02928 oxidoreductase family protein
Probab=90.83 E-value=0.43 Score=35.78 Aligned_cols=30 Identities=13% Similarity=0.283 Sum_probs=27.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
.|.++.|.| .|.+|+.+++.++.+|++|++
T Consensus 158 ~gktvGIiG-~G~IG~~vA~~l~afG~~V~~ 187 (347)
T PLN02928 158 FGKTVFILG-YGAIGIELAKRLRPFGVKLLA 187 (347)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhhCCCEEEE
Confidence 578999999 899999999999999998863
No 196
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=90.62 E-value=0.38 Score=34.95 Aligned_cols=39 Identities=31% Similarity=0.433 Sum_probs=27.0
Q ss_pred HHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 80 YYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 80 ~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+..+.+..++++|++||=.| +| -|..++.+++..|++|+
T Consensus 51 ~~~~~~~~~l~~G~~vLDiG-cG-wG~~~~~~a~~~g~~v~ 89 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIG-CG-WGGLAIYAAERYGCHVT 89 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES--T-TSHHHHHHHHHH--EEE
T ss_pred HHHHHHHhCCCCCCEEEEeC-CC-ccHHHHHHHHHcCcEEE
Confidence 33455888999999999998 55 78889999999999875
No 197
>PRK06487 glycerate dehydrogenase; Provisional
Probab=90.41 E-value=0.48 Score=35.07 Aligned_cols=29 Identities=31% Similarity=0.426 Sum_probs=26.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|.++.|.| .|.+|+..++.++.+|++|+
T Consensus 147 ~gktvgIiG-~G~IG~~vA~~l~~fgm~V~ 175 (317)
T PRK06487 147 EGKTLGLLG-HGELGGAVARLAEAFGMRVL 175 (317)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhhCCCEEE
Confidence 467999999 99999999999999999986
No 198
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=90.38 E-value=2.1 Score=28.03 Aligned_cols=48 Identities=23% Similarity=0.275 Sum_probs=35.7
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++........+ +..++ -.|.+|+|+|.+..+|.-+..+++..|++|+
T Consensus 8 ~p~t~~a~~~ll-~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~ 56 (140)
T cd05212 8 VSPVAKAVKELL-NKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY 56 (140)
T ss_pred cccHHHHHHHHH-HHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE
Confidence 444444444445 33344 4799999999999999999999999999875
No 199
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=90.31 E-value=0.68 Score=35.48 Aligned_cols=33 Identities=21% Similarity=0.323 Sum_probs=25.2
Q ss_pred cCC-CCCCEEEEecCCchHHHH--HHHHHHHCCCEEe
Q psy3430 87 GKM-RPGESLLVHAGAGGLGQA--AISIALHMGCTVY 120 (121)
Q Consensus 87 ~~~-~~g~~vli~ga~g~vG~~--aiqla~~~G~~vi 120 (121)
..+ ..++++||+|+++++|++ ..+.+ ..|++++
T Consensus 35 ~~~~~ggK~aLVTGaSsGIGlA~~IA~al-~~GA~Vi 70 (398)
T PRK13656 35 GPIANGPKKVLVIGASSGYGLASRIAAAF-GAGADTL 70 (398)
T ss_pred CCcCCCCCEEEEECCCchHhHHHHHHHHH-HcCCeEE
Confidence 344 446889999999999999 45555 7899754
No 200
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.25 E-value=1.4 Score=32.25 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=26.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-.|.+++|.|+++-+|.....++...|++|+
T Consensus 157 l~Gk~vvViG~gg~vGkpia~~L~~~gatVt 187 (283)
T PRK14192 157 LAGKHAVVVGRSAILGKPMAMMLLNANATVT 187 (283)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHhCCCEEE
Confidence 5789999999555599999999999999875
No 201
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=90.24 E-value=0.52 Score=36.09 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=27.0
Q ss_pred CCCEEEEecC----------------CchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAG----------------AGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga----------------~g~vG~~aiqla~~~G~~vi 120 (121)
.|.++||+|+ +|.+|.+.++.+...|++|+
T Consensus 187 ~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~ 232 (399)
T PRK05579 187 AGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVT 232 (399)
T ss_pred CCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEE
Confidence 6899999998 56699999999999999986
No 202
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=90.24 E-value=1.6 Score=29.23 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=33.2
Q ss_pred hcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 71 ~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+|++....+..|....---.|++++|.|.+.-+|.-+..+.+..|++|+
T Consensus 15 ~~PcTp~aii~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt 64 (160)
T PF02882_consen 15 FVPCTPLAIIELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT 64 (160)
T ss_dssp S--HHHHHHHHHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE
T ss_pred CcCCCHHHHHHHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE
Confidence 44555555555563332235799999999888999999999999999875
No 203
>PLN02477 glutamate dehydrogenase
Probab=90.05 E-value=1.3 Score=34.11 Aligned_cols=30 Identities=17% Similarity=0.375 Sum_probs=27.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-+|.+|.|.| .|.+|+.+++++...|++|+
T Consensus 204 l~g~~VaIqG-fGnVG~~~A~~L~e~GakVV 233 (410)
T PLN02477 204 IAGQTFVIQG-FGNVGSWAAQLIHEKGGKIV 233 (410)
T ss_pred ccCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence 3688999999 89999999999999999987
No 204
>KOG1200|consensus
Probab=89.89 E-value=0.58 Score=32.85 Aligned_cols=29 Identities=24% Similarity=0.412 Sum_probs=25.8
Q ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 93 ESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 93 ~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
...+|+|+++++|++..|.....|++|.+
T Consensus 15 k~~~vtGg~sGIGrAia~~la~~Garv~v 43 (256)
T KOG1200|consen 15 KVAAVTGGSSGIGRAIAQLLAKKGARVAV 43 (256)
T ss_pred ceeEEecCCchHHHHHHHHHHhcCcEEEE
Confidence 45689999999999999999999999864
No 205
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=89.87 E-value=0.66 Score=35.29 Aligned_cols=47 Identities=21% Similarity=0.258 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+..+..+.+..+.+..+++++++||-.| + |.|..+..+++..|++|+
T Consensus 148 L~~Aq~~k~~~l~~~l~l~~g~rVLDIG-c-G~G~~a~~la~~~g~~V~ 194 (383)
T PRK11705 148 LEEAQEAKLDLICRKLQLKPGMRVLDIG-C-GWGGLARYAAEHYGVSVV 194 (383)
T ss_pred HHHHHHHHHHHHHHHhCCCCCCEEEEeC-C-CccHHHHHHHHHCCCEEE
Confidence 3444455666666778899999999998 4 578888999998888875
No 206
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=89.84 E-value=0.98 Score=32.92 Aligned_cols=29 Identities=24% Similarity=0.281 Sum_probs=24.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
.+++++|.|| |++|++++..+...|++ |+
T Consensus 125 ~~k~vlI~GA-GGagrAia~~La~~G~~~V~ 154 (289)
T PRK12548 125 KGKKLTVIGA-GGAATAIQVQCALDGAKEIT 154 (289)
T ss_pred CCCEEEEECC-cHHHHHHHHHHHHCCCCEEE
Confidence 5788999995 89999998888888985 54
No 207
>PLN02427 UDP-apiose/xylose synthase
Probab=89.78 E-value=0.59 Score=35.06 Aligned_cols=32 Identities=9% Similarity=0.000 Sum_probs=25.8
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHC-CCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHM-GCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~-G~~vi 120 (121)
.-+..+|||+||+|-+|..+++.+... |.+|+
T Consensus 11 ~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~ 43 (386)
T PLN02427 11 PIKPLTICMIGAGGFIGSHLCEKLMTETPHKVL 43 (386)
T ss_pred cccCcEEEEECCcchHHHHHHHHHHhcCCCEEE
Confidence 334568999999999999999988777 46765
No 208
>KOG1208|consensus
Probab=89.68 E-value=0.69 Score=34.32 Aligned_cols=30 Identities=23% Similarity=0.318 Sum_probs=27.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+++|+|+++|+|...++-....|++|+
T Consensus 34 ~~~~~vVTGansGIG~eta~~La~~Ga~Vv 63 (314)
T KOG1208|consen 34 SGKVALVTGATSGIGFETARELALRGAHVV 63 (314)
T ss_pred CCcEEEEECCCCchHHHHHHHHHhCCCEEE
Confidence 567899999999999999999999999886
No 209
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=89.63 E-value=0.72 Score=32.99 Aligned_cols=33 Identities=21% Similarity=0.411 Sum_probs=29.2
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
.+.+-.+++|.| +|.+++..+++|+.+|.+|++
T Consensus 96 ~~~p~~~L~IfG-aG~va~~la~la~~lGf~V~v 128 (246)
T TIGR02964 96 EAPPAPHVVLFG-AGHVGRALVRALAPLPCRVTW 128 (246)
T ss_pred ccCCCCEEEEEC-CcHHHHHHHHHHhcCCCEEEE
Confidence 456778999999 899999999999999998863
No 210
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=89.54 E-value=1.1 Score=28.94 Aligned_cols=37 Identities=27% Similarity=0.309 Sum_probs=25.3
Q ss_pred hhcCCCCCCEEEEecCCch--HHHHHHHHHHHCCCEEeC
Q psy3430 85 VRGKMRPGESLLVHAGAGG--LGQAAISIALHMGCTVYT 121 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~--vG~~aiqla~~~G~~vi~ 121 (121)
...++++||.+++...+|. .=.-+++.||.+|++||+
T Consensus 97 ~~~~~~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIa 135 (138)
T PF13580_consen 97 ALYDIRPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIA 135 (138)
T ss_dssp HHTT--TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEE
T ss_pred HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 4456899999988876664 457788999999999874
No 211
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=89.50 E-value=0.55 Score=33.59 Aligned_cols=33 Identities=30% Similarity=0.517 Sum_probs=25.9
Q ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHCCC--EEe
Q psy3430 86 RGKMRPGESLLVHAGAGGLGQAAISIALHMGC--TVY 120 (121)
Q Consensus 86 ~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~--~vi 120 (121)
...+++|++||..| +|. |..++++++..|. +|+
T Consensus 72 ~~~~~~g~~VLDiG-~G~-G~~~~~~a~~~g~~~~v~ 106 (272)
T PRK11873 72 LAELKPGETVLDLG-SGG-GFDCFLAARRVGPTGKVI 106 (272)
T ss_pred hccCCCCCEEEEeC-CCC-CHHHHHHHHHhCCCCEEE
Confidence 45788999999998 666 8888888887764 454
No 212
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=89.25 E-value=0.39 Score=29.45 Aligned_cols=29 Identities=24% Similarity=0.395 Sum_probs=24.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|.+|||.| .|.++..-++.+...|++|+
T Consensus 6 ~~~~vlVvG-gG~va~~k~~~Ll~~gA~v~ 34 (103)
T PF13241_consen 6 KGKRVLVVG-GGPVAARKARLLLEAGAKVT 34 (103)
T ss_dssp TT-EEEEEE-ESHHHHHHHHHHCCCTBEEE
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence 578999999 79999999999999999875
No 213
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=89.14 E-value=1.6 Score=33.52 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=26.9
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
...++++++|.| +|.+|..+++.++..|+ +|+
T Consensus 176 ~~l~~~~VlViG-aG~iG~~~a~~L~~~G~~~V~ 208 (417)
T TIGR01035 176 GSLKGKKALLIG-AGEMGELVAKHLLRKGVGKIL 208 (417)
T ss_pred CCccCCEEEEEC-ChHHHHHHHHHHHHCCCCEEE
Confidence 345789999999 79999999999999994 554
No 214
>PRK09414 glutamate dehydrogenase; Provisional
Probab=89.08 E-value=1.7 Score=33.82 Aligned_cols=31 Identities=29% Similarity=0.418 Sum_probs=28.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
-+|.+|.|.| .|.+|+.+++++...|++|++
T Consensus 230 l~g~rVaIqG-fGnVG~~~A~~L~~~GakVVa 260 (445)
T PRK09414 230 FEGKRVVVSG-SGNVAIYAIEKAQQLGAKVVT 260 (445)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence 4689999999 899999999999999999874
No 215
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=88.89 E-value=0.67 Score=37.56 Aligned_cols=31 Identities=19% Similarity=0.244 Sum_probs=26.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHC-CCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHM-GCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~-G~~vi 120 (121)
+++.+|||+||+|-+|..+++.+... |.+|+
T Consensus 313 ~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~ 344 (660)
T PRK08125 313 KRRTRVLILGVNGFIGNHLTERLLRDDNYEVY 344 (660)
T ss_pred hcCCEEEEECCCchHHHHHHHHHHhCCCcEEE
Confidence 46788999999999999999888765 67775
No 216
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=88.88 E-value=2 Score=31.09 Aligned_cols=30 Identities=30% Similarity=0.509 Sum_probs=25.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMG-CTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G-~~vi 120 (121)
..+.+++|.| +|++|++++..++..| .+|+
T Consensus 121 ~~~k~vlVlG-aGg~a~ai~~aL~~~g~~~V~ 151 (278)
T PRK00258 121 LKGKRILILG-AGGAARAVILPLLDLGVAEIT 151 (278)
T ss_pred CCCCEEEEEc-CcHHHHHHHHHHHHcCCCEEE
Confidence 3567899999 6999999999999999 4665
No 217
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=88.78 E-value=2 Score=30.91 Aligned_cols=32 Identities=31% Similarity=0.568 Sum_probs=25.7
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
...++.+++|.| +|++|.+++..+...|++|+
T Consensus 113 ~~~~~k~vliiG-aGg~g~aia~~L~~~g~~v~ 144 (270)
T TIGR00507 113 PLRPNQRVLIIG-AGGAARAVALPLLKADCNVI 144 (270)
T ss_pred CCccCCEEEEEc-CcHHHHHHHHHHHHCCCEEE
Confidence 345578999999 58999999988888888764
No 218
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=88.71 E-value=1.5 Score=31.90 Aligned_cols=29 Identities=28% Similarity=0.383 Sum_probs=24.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
.+.+++|.| +|+.|.+++..+...|+ +++
T Consensus 126 ~~k~vlIlG-aGGaaraia~aL~~~G~~~I~ 155 (284)
T PRK12549 126 SLERVVQLG-AGGAGAAVAHALLTLGVERLT 155 (284)
T ss_pred cCCEEEEEC-CcHHHHHHHHHHHHcCCCEEE
Confidence 567899999 89999999999999998 553
No 219
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.71 E-value=2.2 Score=31.35 Aligned_cols=48 Identities=15% Similarity=0.265 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++....+..| +..++. .|.+|+|.|.+.-+|.-+..++...||+|+
T Consensus 137 ~PcTp~avi~lL-~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt 185 (285)
T PRK14191 137 VPATPMGVMRLL-KHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVS 185 (285)
T ss_pred CCCcHHHHHHHH-HHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEE
Confidence 455555555555 444553 699999999877999999999999999886
No 220
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=88.31 E-value=2.5 Score=31.00 Aligned_cols=40 Identities=30% Similarity=0.340 Sum_probs=33.7
Q ss_pred HHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 79 AYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 79 a~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++..+.+..++++|++||=.| +|- |.+++-+|+..|++|+
T Consensus 60 k~~~~~~kl~L~~G~~lLDiG-CGW-G~l~~~aA~~y~v~V~ 99 (283)
T COG2230 60 KLDLILEKLGLKPGMTLLDIG-CGW-GGLAIYAAEEYGVTVV 99 (283)
T ss_pred HHHHHHHhcCCCCCCEEEEeC-CCh-hHHHHHHHHHcCCEEE
Confidence 455666889999999999998 654 8889999999999886
No 221
>PRK06436 glycerate dehydrogenase; Provisional
Probab=88.18 E-value=0.96 Score=33.34 Aligned_cols=29 Identities=28% Similarity=0.478 Sum_probs=26.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|.+|.|.| .|.+|+..+++++.+|++|+
T Consensus 121 ~gktvgIiG-~G~IG~~vA~~l~afG~~V~ 149 (303)
T PRK06436 121 YNKSLGILG-YGGIGRRVALLAKAFGMNIY 149 (303)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence 578999999 99999999999999999886
No 222
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=87.94 E-value=0.96 Score=33.71 Aligned_cols=29 Identities=21% Similarity=0.320 Sum_probs=27.0
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
|.++-|.| .|.+|+.+++.++.+|.+|++
T Consensus 142 gkTvGIiG-~G~IG~~va~~l~afgm~v~~ 170 (324)
T COG0111 142 GKTVGIIG-LGRIGRAVAKRLKAFGMKVIG 170 (324)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHhCCCeEEE
Confidence 78999999 999999999999999999873
No 223
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.87 E-value=2.1 Score=31.46 Aligned_cols=48 Identities=19% Similarity=0.142 Sum_probs=35.9
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++....+..| +..++ -.|.+++|.|.+.-+|.-+..++...|++|+
T Consensus 138 ~PcTp~aii~lL-~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt 186 (285)
T PRK14189 138 RPCTPYGVMKML-ESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT 186 (285)
T ss_pred cCCCHHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence 355544444444 44444 3799999999888889999999999999886
No 224
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=87.65 E-value=0.97 Score=36.63 Aligned_cols=30 Identities=20% Similarity=0.310 Sum_probs=26.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+++|+|.| +|+.|+.++..++..|.+|+
T Consensus 325 ~~~~~VaIIG-aGpAGLsaA~~L~~~G~~V~ 354 (654)
T PRK12769 325 KSDKRVAIIG-AGPAGLACADVLARNGVAVT 354 (654)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence 3588999999 89999999999999999875
No 225
>KOG1252|consensus
Probab=87.50 E-value=1.9 Score=32.45 Aligned_cols=37 Identities=24% Similarity=0.397 Sum_probs=33.1
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
+.+.+.||.++||-.-+|.+|....-+++.+|.++|+
T Consensus 96 ~~G~i~pg~stliEpTSGNtGigLA~~~a~~Gyk~i~ 132 (362)
T KOG1252|consen 96 KKGLITPGKSTLIEPTSGNTGIGLAYMAALRGYKCII 132 (362)
T ss_pred HcCCccCCceEEEecCCCchHHHHHHHHHHcCceEEE
Confidence 4578999999999998899999999999999998763
No 226
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=87.48 E-value=3.4 Score=29.17 Aligned_cols=29 Identities=21% Similarity=0.382 Sum_probs=26.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+|.|.| .|.+|+.+++++...|++|+
T Consensus 30 ~~~~v~I~G-~G~VG~~~a~~L~~~g~~vv 58 (227)
T cd01076 30 AGARVAIQG-FGNVGSHAARFLHEAGAKVV 58 (227)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 578999999 89999999999999999886
No 227
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=87.47 E-value=1.1 Score=34.89 Aligned_cols=29 Identities=31% Similarity=0.394 Sum_probs=26.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+++|+|.| +|..|+.+++.++..|.+|+
T Consensus 140 ~~~~V~IIG-~GpaGl~aA~~l~~~G~~V~ 168 (467)
T TIGR01318 140 TGKRVAVIG-AGPAGLACADILARAGVQVV 168 (467)
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 578999999 89999999999999998775
No 228
>PRK13243 glyoxylate reductase; Reviewed
Probab=87.25 E-value=1.1 Score=33.30 Aligned_cols=29 Identities=24% Similarity=0.342 Sum_probs=26.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|.+|.|.| .|.+|+..++.++.+|++|+
T Consensus 149 ~gktvgIiG-~G~IG~~vA~~l~~~G~~V~ 177 (333)
T PRK13243 149 YGKTIGIIG-FGRIGQAVARRAKGFGMRIL 177 (333)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence 578999999 89999999999999999886
No 229
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=86.95 E-value=2.2 Score=30.99 Aligned_cols=32 Identities=16% Similarity=0.289 Sum_probs=25.6
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
+...+++++|.| +||.+++++..++..|+ +++
T Consensus 118 ~~~~~~~vlilG-aGGaarAi~~aL~~~g~~~i~ 150 (272)
T PRK12550 118 QVPPDLVVALRG-SGGMAKAVAAALRDAGFTDGT 150 (272)
T ss_pred CCCCCCeEEEEC-CcHHHHHHHHHHHHCCCCEEE
Confidence 344567899999 79999999998888887 454
No 230
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=86.78 E-value=1.1 Score=32.02 Aligned_cols=30 Identities=20% Similarity=0.396 Sum_probs=27.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-.|.++.|.| .|.+|..+++.+..+|++++
T Consensus 30 l~g~~v~IqG-fG~VG~~~a~~l~~~Ga~vv 59 (244)
T PF00208_consen 30 LEGKRVAIQG-FGNVGSHAARFLAELGAKVV 59 (244)
T ss_dssp STTCEEEEEE-SSHHHHHHHHHHHHTTEEEE
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence 3689999999 79999999999999999876
No 231
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=86.68 E-value=2.4 Score=31.09 Aligned_cols=31 Identities=23% Similarity=0.325 Sum_probs=26.1
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
..+|++++|.| +||.+++++.-++..|+ ++.
T Consensus 123 ~~~~~~vlilG-AGGAarAv~~aL~~~g~~~i~ 154 (283)
T COG0169 123 DVTGKRVLILG-AGGAARAVAFALAEAGAKRIT 154 (283)
T ss_pred ccCCCEEEEEC-CcHHHHHHHHHHHHcCCCEEE
Confidence 34689999999 89999999999999996 554
No 232
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=86.50 E-value=1.3 Score=33.96 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=26.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|.++.|.| .|.+|+..++.++.+|.+|+
T Consensus 150 ~gktvGIiG-~G~IG~~vA~~~~~fGm~V~ 178 (409)
T PRK11790 150 RGKTLGIVG-YGHIGTQLSVLAESLGMRVY 178 (409)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 578999999 99999999999999999986
No 233
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=86.23 E-value=1.4 Score=33.56 Aligned_cols=30 Identities=10% Similarity=0.150 Sum_probs=27.7
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-.|.+|-|.| .|.+|....+.++.+|.+|+
T Consensus 114 L~gktvGIIG-~G~IG~~vA~~l~a~G~~V~ 143 (378)
T PRK15438 114 LHDRTVGIVG-VGNVGRRLQARLEALGIKTL 143 (378)
T ss_pred cCCCEEEEEC-cCHHHHHHHHHHHHCCCEEE
Confidence 3689999999 89999999999999999986
No 234
>KOG1210|consensus
Probab=85.59 E-value=3.2 Score=31.02 Aligned_cols=34 Identities=29% Similarity=0.413 Sum_probs=29.1
Q ss_pred cCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 87 ~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-+.++...++|.|++.++|++...-++..|++|.
T Consensus 28 ~~~k~~~hi~itggS~glgl~la~e~~~~ga~Vt 61 (331)
T KOG1210|consen 28 VKPKPRRHILITGGSSGLGLALALECKREGADVT 61 (331)
T ss_pred cccCccceEEEecCcchhhHHHHHHHHHccCceE
Confidence 3445568999999999999999999999999764
No 235
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=85.54 E-value=2.9 Score=30.53 Aligned_cols=29 Identities=24% Similarity=0.359 Sum_probs=23.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCC-EE
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGC-TV 119 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~-~v 119 (121)
..+.+++|.| +||.+++++.-+...|+ ++
T Consensus 125 ~~~k~vlilG-aGGaarAi~~aL~~~g~~~i 154 (283)
T PRK14027 125 AKLDSVVQVG-AGGVGNAVAYALVTHGVQKL 154 (283)
T ss_pred cCCCeEEEEC-CcHHHHHHHHHHHHCCCCEE
Confidence 3478899999 79999999988878887 44
No 236
>KOG2862|consensus
Probab=85.52 E-value=1.3 Score=33.18 Aligned_cols=30 Identities=37% Similarity=0.616 Sum_probs=27.4
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTV 119 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~v 119 (121)
+.|||++|+.- .|--|+-++.+++.+|++|
T Consensus 89 lePgd~vLv~~-~G~wg~ra~D~~~r~ga~V 118 (385)
T KOG2862|consen 89 LEPGDNVLVVS-TGTWGQRAADCARRYGAEV 118 (385)
T ss_pred cCCCCeEEEEE-echHHHHHHHHHHhhCcee
Confidence 56999999976 8999999999999999976
No 237
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=85.50 E-value=1.7 Score=32.21 Aligned_cols=29 Identities=17% Similarity=0.150 Sum_probs=26.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|.+|.|.| .|.+|+..++.++.+|++|+
T Consensus 135 ~g~tvgIvG-~G~IG~~vA~~l~afG~~V~ 163 (312)
T PRK15469 135 EDFTIGILG-AGVLGSKVAQSLQTWGFPLR 163 (312)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 578999999 99999999999999999875
No 238
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.27 E-value=3.4 Score=30.33 Aligned_cols=48 Identities=23% Similarity=0.183 Sum_probs=36.7
Q ss_pred cchHHHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|++....+..| +..++. .|.+++|.|.+.-+|.-+..+++..||+|+
T Consensus 139 ~PcTp~av~~ll-~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt 187 (285)
T PRK10792 139 RPCTPRGIMTLL-ERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVT 187 (285)
T ss_pred CCCCHHHHHHHH-HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEE
Confidence 455555555555 444443 699999999777799999999999999886
No 239
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=85.18 E-value=1.5 Score=35.52 Aligned_cols=29 Identities=28% Similarity=0.302 Sum_probs=26.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+++|+|.| +|..|+.+++.++..|.+|+
T Consensus 309 ~~kkVaIIG-~GpaGl~aA~~L~~~G~~Vt 337 (639)
T PRK12809 309 RSEKVAVIG-AGPAGLGCADILARAGVQVD 337 (639)
T ss_pred CCCEEEEEC-cCHHHHHHHHHHHHcCCcEE
Confidence 489999999 89999999999999998775
No 240
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=85.02 E-value=4.2 Score=30.02 Aligned_cols=48 Identities=19% Similarity=0.162 Sum_probs=36.4
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++....+..| +..++ -.|.+|+|.|.++-+|.-.+.++...|++|+
T Consensus 138 ~PcTp~ai~~ll-~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt 186 (296)
T PRK14188 138 VPCTPLGCMMLL-RRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT 186 (296)
T ss_pred cCCCHHHHHHHH-HHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE
Confidence 455555555555 43344 4799999999999999999999998999875
No 241
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.95 E-value=3.9 Score=30.07 Aligned_cols=48 Identities=15% Similarity=0.209 Sum_probs=36.8
Q ss_pred cchHHHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|++....+..| +..++. .|.+++|.|.+.-+|.-+..++...||+|+
T Consensus 144 ~PcTp~av~~ll-~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt 192 (287)
T PRK14176 144 VPCTPHGVIRAL-EEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS 192 (287)
T ss_pred CCCcHHHHHHHH-HHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEE
Confidence 455555555555 444554 799999999877899999999999999876
No 242
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=84.68 E-value=2.5 Score=24.33 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=21.9
Q ss_pred EEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 94 SLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 94 ~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++|.| +|.+|.-.++.++.+|.+|.
T Consensus 1 ~vvViG-gG~ig~E~A~~l~~~g~~vt 26 (80)
T PF00070_consen 1 RVVVIG-GGFIGIELAEALAELGKEVT 26 (80)
T ss_dssp EEEEES-SSHHHHHHHHHHHHTTSEEE
T ss_pred CEEEEC-cCHHHHHHHHHHHHhCcEEE
Confidence 578888 89999999988888888764
No 243
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=84.65 E-value=3.9 Score=28.41 Aligned_cols=49 Identities=14% Similarity=0.167 Sum_probs=37.4
Q ss_pred hcchHHHHHHHHHHhhcCC----------CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 71 TIPVVYATAYYSLIVRGKM----------RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 71 ~l~~~~~ta~~~l~~~~~~----------~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+||.....+..| +..++ -.|++++|.|.+.-+|.=+..++...||+|+
T Consensus 32 ~~PCTp~avi~lL-~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt 90 (197)
T cd01079 32 ILPCTPLAIVKIL-EFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY 90 (197)
T ss_pred ccCCCHHHHHHHH-HHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence 3566655555555 33333 4799999999999999999999999999885
No 244
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=84.60 E-value=1.7 Score=33.29 Aligned_cols=31 Identities=32% Similarity=0.518 Sum_probs=26.6
Q ss_pred CCCCEEEEecC---------------Cch-HHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAG---------------AGG-LGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga---------------~g~-vG~~aiqla~~~G~~vi 120 (121)
-+|.++||+|+ ++| +|.+.++-+..+|++|+
T Consensus 183 ~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~ 229 (390)
T TIGR00521 183 LEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVT 229 (390)
T ss_pred cCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEE
Confidence 47899999998 344 99999999999999876
No 245
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=84.49 E-value=3.9 Score=31.23 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=27.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
-.|.+|.|.| .|.+|...++.++.+|.+|++
T Consensus 114 l~gktvGIIG-~G~IG~~va~~l~a~G~~V~~ 144 (381)
T PRK00257 114 LAERTYGVVG-AGHVGGRLVRVLRGLGWKVLV 144 (381)
T ss_pred cCcCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence 3688999999 899999999999999998863
No 246
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=84.44 E-value=1.7 Score=32.33 Aligned_cols=29 Identities=17% Similarity=0.189 Sum_probs=26.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHH-HCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIAL-HMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~-~~G~~vi 120 (121)
.|.++.|.| .|.+|+..++.++ .+|++|+
T Consensus 144 ~gktvGIiG-~G~IG~~va~~l~~~fgm~V~ 173 (323)
T PRK15409 144 HHKTLGIVG-MGRIGMALAQRAHFGFNMPIL 173 (323)
T ss_pred CCCEEEEEc-ccHHHHHHHHHHHhcCCCEEE
Confidence 578999999 8999999999998 8999876
No 247
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=84.30 E-value=4.3 Score=29.80 Aligned_cols=49 Identities=16% Similarity=0.092 Sum_probs=36.8
Q ss_pred cchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++....+..|....---.|.+++|.|.+.-+|.=+..++...||+|+
T Consensus 138 ~PcTp~aii~lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt 186 (282)
T PRK14180 138 ESCTPKGIMTMLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT 186 (282)
T ss_pred CCCCHHHHHHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 4555555555553332234699999999999999999999999999886
No 248
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=84.18 E-value=4.3 Score=28.55 Aligned_cols=28 Identities=21% Similarity=0.344 Sum_probs=23.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCT 118 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~ 118 (121)
-.+.+++|.| +|+.|..++..+...|++
T Consensus 23 l~~~rvlvlG-AGgAg~aiA~~L~~~G~~ 50 (226)
T cd05311 23 IEEVKIVING-AGAAGIAIARLLLAAGAK 50 (226)
T ss_pred ccCCEEEEEC-chHHHHHHHHHHHHcCcC
Confidence 4568999999 799999999888888875
No 249
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=84.08 E-value=2 Score=31.27 Aligned_cols=29 Identities=31% Similarity=0.386 Sum_probs=24.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
++.+++|.| +|+.+++++.-+..+|+ +++
T Consensus 124 ~~k~vlvlG-aGGaarai~~aL~~~G~~~i~ 153 (282)
T TIGR01809 124 AGFRGLVIG-AGGTSRAAVYALASLGVTDIT 153 (282)
T ss_pred CCceEEEEc-CcHHHHHHHHHHHHcCCCeEE
Confidence 578999999 79999999998888997 454
No 250
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.98 E-value=4.5 Score=29.61 Aligned_cols=48 Identities=15% Similarity=0.207 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++...||+|+
T Consensus 138 ~PcTp~av~~lL-~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt 186 (278)
T PRK14172 138 LPCTPNSVITLI-KSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVT 186 (278)
T ss_pred cCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence 355555555555 33444 4799999999999999999999999999886
No 251
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=83.88 E-value=2.3 Score=32.97 Aligned_cols=29 Identities=31% Similarity=0.371 Sum_probs=25.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+++|+|.| .|.+|+.++.+++..|.+|+
T Consensus 15 ~~~~v~viG-~G~~G~~~A~~L~~~G~~V~ 43 (480)
T PRK01438 15 QGLRVVVAG-LGVSGFAAADALLELGARVT 43 (480)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEE
Confidence 467899999 79999999999999999875
No 252
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.81 E-value=4.5 Score=29.70 Aligned_cols=48 Identities=17% Similarity=0.173 Sum_probs=36.7
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++.......| +..++ -.|.+++|.|.+.-+|.=+..++...+|+|+
T Consensus 138 ~PcTp~av~~lL-~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt 186 (284)
T PRK14190 138 LPCTPHGILELL-KEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT 186 (284)
T ss_pred CCCCHHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence 455555555555 44444 4799999999999999999999999999886
No 253
>PLN02306 hydroxypyruvate reductase
Probab=83.50 E-value=2 Score=32.84 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=25.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHH-HCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIAL-HMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~-~~G~~vi 120 (121)
.|.+|.|.| .|.+|+..++.++ .+|++|+
T Consensus 164 ~gktvGIiG-~G~IG~~vA~~l~~~fGm~V~ 193 (386)
T PLN02306 164 KGQTVGVIG-AGRIGSAYARMMVEGFKMNLI 193 (386)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCEEE
Confidence 478899999 9999999999984 8999886
No 254
>KOG1610|consensus
Probab=83.44 E-value=5.1 Score=29.88 Aligned_cols=31 Identities=16% Similarity=0.326 Sum_probs=27.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
.+..|+|+|..+|.|..++.-+...|.+|++
T Consensus 28 ~~k~VlITGCDSGfG~~LA~~L~~~Gf~V~A 58 (322)
T KOG1610|consen 28 SDKAVLITGCDSGFGRLLAKKLDKKGFRVFA 58 (322)
T ss_pred CCcEEEEecCCcHHHHHHHHHHHhcCCEEEE
Confidence 4567999999999999999988899998874
No 255
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=83.26 E-value=5.6 Score=23.30 Aligned_cols=29 Identities=24% Similarity=0.407 Sum_probs=23.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCC-CEE
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMG-CTV 119 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G-~~v 119 (121)
-.+.+++|.| +|.+|..+.+.+...+ .++
T Consensus 21 ~~~~~v~i~G-~G~~g~~~a~~l~~~~~~~v 50 (86)
T cd05191 21 LKGKTVVVLG-AGEVGKGIAKLLADEGGKKV 50 (86)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHcCCCEE
Confidence 4678999999 6999999999998874 444
No 256
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=83.22 E-value=4.5 Score=29.61 Aligned_cols=28 Identities=21% Similarity=0.335 Sum_probs=21.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-EE
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC-TV 119 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~-~v 119 (121)
.+.+++|.| +|+.+++++..+...|+ ++
T Consensus 123 ~~k~vlvlG-aGGaarAi~~~l~~~g~~~i 151 (288)
T PRK12749 123 KGKTMVLLG-AGGASTAIGAQGAIEGLKEI 151 (288)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCCCEE
Confidence 567999999 68888887776667787 44
No 257
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=83.10 E-value=2.9 Score=27.74 Aligned_cols=29 Identities=14% Similarity=0.127 Sum_probs=24.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|.+|+|.| .|.+|.--++.....|++|.
T Consensus 12 ~~~~vlVvG-GG~va~rka~~Ll~~ga~V~ 40 (157)
T PRK06719 12 HNKVVVIIG-GGKIAYRKASGLKDTGAFVT 40 (157)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence 578899999 79999988888888898764
No 258
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=83.08 E-value=5.2 Score=29.38 Aligned_cols=48 Identities=19% Similarity=0.161 Sum_probs=36.6
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++...||+|+
T Consensus 139 ~PcTp~avi~ll-~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt 187 (284)
T PRK14177 139 LPCTPYGMVLLL-KEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVT 187 (284)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 455555455445 33343 4799999999999999999999999999886
No 259
>PRK07574 formate dehydrogenase; Provisional
Probab=83.05 E-value=2.3 Score=32.50 Aligned_cols=29 Identities=17% Similarity=0.233 Sum_probs=26.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|.+|.|.| .|.+|+..++.++.+|.+|+
T Consensus 191 ~gktVGIvG-~G~IG~~vA~~l~~fG~~V~ 219 (385)
T PRK07574 191 EGMTVGIVG-AGRIGLAVLRRLKPFDVKLH 219 (385)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence 567899999 89999999999999999886
No 260
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=82.77 E-value=2.5 Score=31.56 Aligned_cols=29 Identities=28% Similarity=0.359 Sum_probs=26.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|.++-|.| .|.+|++..+.++.+|++|+
T Consensus 145 ~gktvGIiG-~GrIG~avA~r~~~Fgm~v~ 173 (324)
T COG1052 145 RGKTLGIIG-LGRIGQAVARRLKGFGMKVL 173 (324)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHhcCCCEEE
Confidence 488999999 99999999999999999875
No 261
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=82.53 E-value=2.2 Score=33.22 Aligned_cols=29 Identities=28% Similarity=0.466 Sum_probs=25.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+|+|.| .|+.|.+++++++..|++|+
T Consensus 14 ~~~~v~v~G-~G~sG~a~a~~L~~~G~~V~ 42 (473)
T PRK00141 14 LSGRVLVAG-AGVSGRGIAAMLSELGCDVV 42 (473)
T ss_pred cCCeEEEEc-cCHHHHHHHHHHHHCCCEEE
Confidence 466899999 89999999999999999775
No 262
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.43 E-value=4.6 Score=29.66 Aligned_cols=49 Identities=18% Similarity=0.164 Sum_probs=36.5
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
+|++.......| +..++ -.|.++.|.|.++-+|.-...++...|++|++
T Consensus 138 ~PcTp~avi~lL-~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVtv 187 (284)
T PRK14179 138 IPCTPAGIMEMF-REYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVTL 187 (284)
T ss_pred cCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEEE
Confidence 355555555455 33344 47999999998899999999999999998763
No 263
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=82.27 E-value=2.7 Score=31.32 Aligned_cols=29 Identities=21% Similarity=0.353 Sum_probs=26.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|.+|.|.| .|.+|...++.++.+|.+|+
T Consensus 145 ~g~~VgIIG-~G~IG~~vA~~L~~~G~~V~ 173 (330)
T PRK12480 145 KNMTVAIIG-TGRIGAATAKIYAGFGATIT 173 (330)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence 567899999 89999999999999999886
No 264
>COG0503 Apt Adenine/guanine phosphoribosyltransferases and related PRPP-binding proteins [Nucleotide transport and metabolism]
Probab=82.24 E-value=3.7 Score=27.87 Aligned_cols=33 Identities=27% Similarity=0.540 Sum_probs=28.5
Q ss_pred CCCCCCEEEEe---cCCchHHHHHHHHHHHCCCEEe
Q psy3430 88 KMRPGESLLVH---AGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 88 ~~~~g~~vli~---ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+++||+|+|. -++|+.-.+++++.+..|++|.
T Consensus 112 ~l~~G~rVlIVDDllaTGgT~~a~~~Ll~~~ga~vv 147 (179)
T COG0503 112 ALKPGDRVLIVDDLLATGGTALALIELLEQAGAEVV 147 (179)
T ss_pred hCCCCCEEEEEecchhcChHHHHHHHHHHHCCCEEE
Confidence 45699999987 4589999999999999999875
No 265
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.21 E-value=5.8 Score=29.09 Aligned_cols=48 Identities=10% Similarity=0.101 Sum_probs=36.4
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++...|++|+
T Consensus 136 ~PcTp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt 184 (282)
T PRK14169 136 VASTPYGIMALL-DAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT 184 (282)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence 455555555555 33344 4799999999999999999999999999885
No 266
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=82.14 E-value=2.5 Score=33.63 Aligned_cols=29 Identities=34% Similarity=0.421 Sum_probs=24.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+++|.| +|++|.+++..+...|++|+
T Consensus 378 ~~k~vlIlG-aGGagrAia~~L~~~G~~V~ 406 (529)
T PLN02520 378 AGKLFVVIG-AGGAGKALAYGAKEKGARVV 406 (529)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHCCCEEE
Confidence 467899999 58999999999999998765
No 267
>KOG1203|consensus
Probab=82.13 E-value=2.8 Score=32.33 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=27.5
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-..-+.|+|.||+|.+|+..++.++..|..|.
T Consensus 76 ~~~~~~VlVvGatG~vG~~iv~~llkrgf~vr 107 (411)
T KOG1203|consen 76 SKKPTTVLVVGATGKVGRRIVKILLKRGFSVR 107 (411)
T ss_pred CCCCCeEEEecCCCchhHHHHHHHHHCCCeee
Confidence 34567899999999999999999999997654
No 268
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=82.09 E-value=6.1 Score=29.26 Aligned_cols=48 Identities=17% Similarity=0.194 Sum_probs=36.0
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++.......| +..++ -.|.+|.+.|.++-+|.-...++...|++|+
T Consensus 139 ~PcTp~aii~lL-~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt 187 (301)
T PRK14194 139 TPCTPSGCLRLL-EDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT 187 (301)
T ss_pred CCCcHHHHHHHH-HHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence 455555555555 44444 4699999999777999999999999999876
No 269
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.81 E-value=6 Score=29.11 Aligned_cols=48 Identities=19% Similarity=0.179 Sum_probs=36.8
Q ss_pred cchHHHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|++....+..| +..++. .|.+++|.|.+.-+|.=+..++...+++|+
T Consensus 135 ~PcTp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt 183 (287)
T PRK14173 135 EPCTPAGVVRLL-KHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT 183 (287)
T ss_pred CCCCHHHHHHHH-HHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE
Confidence 455555455455 444554 699999999999999999999999999886
No 270
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=81.68 E-value=6.4 Score=28.89 Aligned_cols=48 Identities=17% Similarity=0.240 Sum_probs=36.8
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++...+|+|+
T Consensus 137 ~PcTp~avi~lL-~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt 185 (282)
T PRK14166 137 LPCTPLGVMKLL-KAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS 185 (282)
T ss_pred cCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 455555555555 43443 4799999999999999999999999999886
No 271
>PRK12831 putative oxidoreductase; Provisional
Probab=81.55 E-value=3.1 Score=32.36 Aligned_cols=30 Identities=23% Similarity=0.326 Sum_probs=26.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.+..|+|.| +|+.|+.++..++.+|.+|+
T Consensus 138 ~~~~~V~IIG-~GpAGl~aA~~l~~~G~~V~ 167 (464)
T PRK12831 138 KKGKKVAVIG-SGPAGLTCAGDLAKMGYDVT 167 (464)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHhCCCeEE
Confidence 4688999999 79999999988888998775
No 272
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.95 E-value=6.6 Score=28.99 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=36.3
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++...+|+|+
T Consensus 140 ~PcTp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt 188 (294)
T PRK14187 140 IPCTPKGCLYLI-KTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT 188 (294)
T ss_pred cCcCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE
Confidence 455545445455 33343 4699999999999999999999999999886
No 273
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.71 E-value=7.4 Score=28.55 Aligned_cols=48 Identities=17% Similarity=0.196 Sum_probs=35.9
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|++....+..| +..++ -.|.+++|.|.+.-+|.=...+....||+|+
T Consensus 137 ~PcTp~avi~lL-~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt 185 (281)
T PRK14183 137 VPCTPLGVMELL-EEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD 185 (281)
T ss_pred CCCcHHHHHHHH-HHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 455544444444 44444 3799999999888999999999999999875
No 274
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=80.51 E-value=7 Score=28.94 Aligned_cols=48 Identities=19% Similarity=0.195 Sum_probs=36.7
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++...||+|+
T Consensus 147 ~PcTp~avi~lL-~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt 195 (299)
T PLN02516 147 LPCTPKGCLELL-SRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVT 195 (299)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence 455555555555 33343 3699999999999999999999999999886
No 275
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=80.43 E-value=3.3 Score=32.18 Aligned_cols=30 Identities=30% Similarity=0.358 Sum_probs=26.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.+.+|+|.| +|..|+.++..++..|.+|+
T Consensus 141 ~~~~~VvIIG-aGpAGl~aA~~l~~~G~~V~ 170 (471)
T PRK12810 141 RTGKKVAVVG-SGPAGLAAADQLARAGHKVT 170 (471)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHhCCCcEE
Confidence 4578999999 79999999999999998765
No 276
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.40 E-value=7 Score=28.71 Aligned_cols=48 Identities=17% Similarity=0.189 Sum_probs=36.6
Q ss_pred cchHHHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++.......| +..++. .|.+++|.|.+.-+|.=+..+....+++|+
T Consensus 137 ~PcTp~avi~lL-~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt 185 (284)
T PRK14170 137 VPCTPAGIIELI-KSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT 185 (284)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 455555455455 444443 699999999999999999999999999886
No 277
>PRK13984 putative oxidoreductase; Provisional
Probab=80.39 E-value=3.3 Score=33.18 Aligned_cols=31 Identities=19% Similarity=0.268 Sum_probs=27.1
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+++++|+|.| +|..|+.++..++..|.+|+
T Consensus 280 ~~~~~~v~IIG-aG~aGl~aA~~L~~~G~~v~ 310 (604)
T PRK13984 280 EKKNKKVAIVG-SGPAGLSAAYFLATMGYEVT 310 (604)
T ss_pred ccCCCeEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence 35688999999 89999999999999998765
No 278
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=80.12 E-value=7.7 Score=28.68 Aligned_cols=48 Identities=17% Similarity=0.081 Sum_probs=36.1
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|++....+..| +..++ -.|.+++|.|.+.-+|.=+..+....||+|+
T Consensus 138 ~PcTp~aii~lL-~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt 186 (297)
T PRK14186 138 RSCTPAGVMRLL-RSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVT 186 (297)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE
Confidence 355544444444 44444 3799999999999999999999999999886
No 279
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=80.07 E-value=8.5 Score=24.70 Aligned_cols=30 Identities=23% Similarity=0.423 Sum_probs=23.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMG-CTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G-~~vi 120 (121)
..+.+++|.| .|.+|...++..+..| .+|+
T Consensus 17 ~~~~~i~iiG-~G~~g~~~a~~l~~~g~~~v~ 47 (155)
T cd01065 17 LKGKKVLILG-AGGAARAVAYALAELGAAKIV 47 (155)
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHHCCCCEEE
Confidence 4578899999 5999999998888775 4553
No 280
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=79.96 E-value=7.8 Score=28.53 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=36.2
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++...+|+|+
T Consensus 139 ~PcTp~av~~lL-~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVt 187 (288)
T PRK14171 139 IPCTALGCLAVI-KKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVT 187 (288)
T ss_pred cCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 455544444445 44444 4699999999999999999999999999886
No 281
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=79.86 E-value=5.3 Score=29.58 Aligned_cols=35 Identities=31% Similarity=0.528 Sum_probs=29.2
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.+.+++|++| |-+-+|.+|.....+|+++|.+++
T Consensus 55 ~~G~l~pG~tI-VE~TSGNTGI~LA~vaa~~Gy~~i 89 (300)
T COG0031 55 KRGLLKPGGTI-VEATSGNTGIALAMVAAAKGYRLI 89 (300)
T ss_pred HcCCCCCCCEE-EEcCCChHHHHHHHHHHHcCCcEE
Confidence 56779999955 566689999999999999999765
No 282
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=79.78 E-value=2.8 Score=33.65 Aligned_cols=27 Identities=26% Similarity=0.505 Sum_probs=21.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
.|++|||+||+|++|.-.+.-....+.
T Consensus 249 ~gK~vLVTGagGSiGsel~~qil~~~p 275 (588)
T COG1086 249 TGKTVLVTGGGGSIGSELCRQILKFNP 275 (588)
T ss_pred CCCEEEEeCCCCcHHHHHHHHHHhcCC
Confidence 689999999999999877744444465
No 283
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=79.59 E-value=3.2 Score=32.16 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=26.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+|+|.| .|..|.+++++++..|++|+
T Consensus 13 ~~~~i~v~G-~G~sG~a~a~~L~~~G~~V~ 41 (458)
T PRK01710 13 KNKKVAVVG-IGVSNIPLIKFLVKLGAKVT 41 (458)
T ss_pred cCCeEEEEc-ccHHHHHHHHHHHHCCCEEE
Confidence 367899999 89999999999999999876
No 284
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=79.47 E-value=3.6 Score=33.51 Aligned_cols=30 Identities=27% Similarity=0.364 Sum_probs=26.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.+++|+|.| +|+.|+.++..++..|.+|+
T Consensus 191 ~~~k~VaIIG-aGpAGl~aA~~La~~G~~Vt 220 (652)
T PRK12814 191 KSGKKVAIIG-AGPAGLTAAYYLLRKGHDVT 220 (652)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHHCCCcEE
Confidence 3578999999 89999999999999998765
No 285
>PRK14982 acyl-ACP reductase; Provisional
Probab=79.38 E-value=3.7 Score=30.93 Aligned_cols=30 Identities=17% Similarity=0.220 Sum_probs=23.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHH-CCC-EE
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALH-MGC-TV 119 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~-~G~-~v 119 (121)
-.+.+|+|.||+|.+|..+++.... .|. ++
T Consensus 153 l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~l 184 (340)
T PRK14982 153 LSKATVAVVGATGDIGSAVCRWLDAKTGVAEL 184 (340)
T ss_pred cCCCEEEEEccChHHHHHHHHHHHhhCCCCEE
Confidence 3678999999999999999888754 454 44
No 286
>PLN00016 RNA-binding protein; Provisional
Probab=79.36 E-value=2.2 Score=31.94 Aligned_cols=29 Identities=17% Similarity=0.185 Sum_probs=25.3
Q ss_pred CCEEEEe----cCCchHHHHHHHHHHHCCCEEe
Q psy3430 92 GESLLVH----AGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 92 g~~vli~----ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+|||+ ||+|-+|..+++.+...|.+|+
T Consensus 52 ~~~VLVt~~~~GatG~iG~~lv~~L~~~G~~V~ 84 (378)
T PLN00016 52 KKKVLIVNTNSGGHAFIGFYLAKELVKAGHEVT 84 (378)
T ss_pred cceEEEEeccCCCceeEhHHHHHHHHHCCCEEE
Confidence 3679999 9999999999998888888775
No 287
>PLN03139 formate dehydrogenase; Provisional
Probab=79.29 E-value=3.4 Score=31.59 Aligned_cols=29 Identities=17% Similarity=0.383 Sum_probs=26.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|.+|.|.| .|.+|+..++.++.+|++|+
T Consensus 198 ~gktVGIVG-~G~IG~~vA~~L~afG~~V~ 226 (386)
T PLN03139 198 EGKTVGTVG-AGRIGRLLLQRLKPFNCNLL 226 (386)
T ss_pred CCCEEEEEe-ecHHHHHHHHHHHHCCCEEE
Confidence 578999999 89999999999999999886
No 288
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=79.23 E-value=8.4 Score=30.26 Aligned_cols=29 Identities=17% Similarity=0.319 Sum_probs=25.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+++|.| +|++|.+++......|++++
T Consensus 331 ~~k~vlIiG-aGgiG~aia~~L~~~G~~V~ 359 (477)
T PRK09310 331 NNQHVAIVG-AGGAAKAIATTLARAGAELL 359 (477)
T ss_pred CCCEEEEEc-CcHHHHHHHHHHHHCCCEEE
Confidence 567899999 69999999999988998764
No 289
>KOG1429|consensus
Probab=78.78 E-value=5.2 Score=29.74 Aligned_cols=34 Identities=24% Similarity=0.346 Sum_probs=28.8
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
....+-+|+|+||+|-+|+-++.-+...|=+||+
T Consensus 23 ~p~~~lrI~itGgaGFIgSHLvdkLm~egh~VIa 56 (350)
T KOG1429|consen 23 KPSQNLRILITGGAGFIGSHLVDKLMTEGHEVIA 56 (350)
T ss_pred cCCCCcEEEEecCcchHHHHHHHHHHhcCCeEEE
Confidence 3445689999999999999999999888877774
No 290
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=78.44 E-value=4 Score=33.11 Aligned_cols=29 Identities=17% Similarity=0.250 Sum_probs=25.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTV 119 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~v 119 (121)
+..+|||+||+|-+|..+++.++..|.+|
T Consensus 379 ~~mkiLVtGa~G~iG~~l~~~L~~~g~~v 407 (668)
T PLN02260 379 PSLKFLIYGRTGWIGGLLGKLCEKQGIAY 407 (668)
T ss_pred CCceEEEECCCchHHHHHHHHHHhCCCeE
Confidence 45679999999999999999988888776
No 291
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=78.34 E-value=9.4 Score=28.03 Aligned_cols=48 Identities=21% Similarity=0.194 Sum_probs=36.4
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++....+..| +..++ -.|.+++|.|.+.-+|.=+..+....+|+|+
T Consensus 137 ~PcTp~avi~ll-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVt 185 (282)
T PRK14182 137 RPCTPAGVMRML-DEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVT 185 (282)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE
Confidence 455555455455 43344 3799999999999999999999999999876
No 292
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=78.09 E-value=4.2 Score=31.81 Aligned_cols=30 Identities=33% Similarity=0.365 Sum_probs=26.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.+++|+|.| +|..|+.++..++..|.+|+
T Consensus 141 ~~~~~V~IIG-aG~aGl~aA~~L~~~g~~V~ 170 (485)
T TIGR01317 141 RTGKKVAVVG-SGPAGLAAADQLNRAGHTVT 170 (485)
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHHcCCeEE
Confidence 3568999999 79999999999998898765
No 293
>PLN02565 cysteine synthase
Probab=78.02 E-value=10 Score=28.17 Aligned_cols=36 Identities=28% Similarity=0.510 Sum_probs=29.1
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+...+++|++.+|...+|..|+++...|+.+|.+++
T Consensus 59 ~~g~~~~g~~~vv~aSsGN~g~alA~~a~~~G~~~~ 94 (322)
T PLN02565 59 EKGLIKPGESVLIEPTSGNTGIGLAFMAAAKGYKLI 94 (322)
T ss_pred HcCCCCCCCcEEEEECCChHHHHHHHHHHHcCCeEE
Confidence 455667887766777689999999999999998754
No 294
>KOG1712|consensus
Probab=78.00 E-value=4.9 Score=27.21 Aligned_cols=36 Identities=28% Similarity=0.512 Sum_probs=30.6
Q ss_pred hhcCCCCCCEEEEe---cCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVH---AGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~---ga~g~vG~~aiqla~~~G~~vi 120 (121)
+...+++|++|+|. =|+|+.-.+|..+....|++|+
T Consensus 115 q~~Ai~~g~rvvvVDDllATGGTl~AA~~Ll~r~ga~vv 153 (183)
T KOG1712|consen 115 QKGAIKPGQRVVVVDDLLATGGTLAAATELLERVGAEVV 153 (183)
T ss_pred eccccCCCCeEEEEechhhcCccHHHHHHHHHHhccEEE
Confidence 55678999999886 3589999999999999999875
No 295
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=77.72 E-value=3.9 Score=34.86 Aligned_cols=30 Identities=17% Similarity=0.101 Sum_probs=26.6
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..|.+|+|.| +|+.|+.++..+...|.+|+
T Consensus 304 ~~gkkVaVIG-sGPAGLsaA~~Lar~G~~Vt 333 (944)
T PRK12779 304 AVKPPIAVVG-SGPSGLINAYLLAVEGFPVT 333 (944)
T ss_pred CCCCeEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence 3589999999 89999999999999998775
No 296
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=77.52 E-value=4.7 Score=27.75 Aligned_cols=26 Identities=31% Similarity=0.423 Sum_probs=22.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
...+|+|.| .|++|..+++.+...|.
T Consensus 20 ~~~~VlviG-~GglGs~ia~~La~~Gv 45 (202)
T TIGR02356 20 LNSHVLIIG-AGGLGSPAALYLAGAGV 45 (202)
T ss_pred cCCCEEEEC-CCHHHHHHHHHHHHcCC
Confidence 457899999 89999999999988887
No 297
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=77.50 E-value=10 Score=29.34 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=23.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
.+.+++|.| +|++|.+++..+...|+
T Consensus 180 ~~kkvlviG-aG~~a~~va~~L~~~g~ 205 (414)
T PRK13940 180 SSKNVLIIG-AGQTGELLFRHVTALAP 205 (414)
T ss_pred cCCEEEEEc-CcHHHHHHHHHHHHcCC
Confidence 578899999 79999999999988886
No 298
>PRK08328 hypothetical protein; Provisional
Probab=76.86 E-value=4.5 Score=28.50 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
.+.+|+|.| +|++|..+++.+...|.
T Consensus 26 ~~~~VlIiG-~GGlGs~ia~~La~~Gv 51 (231)
T PRK08328 26 KKAKVAVVG-VGGLGSPVAYYLAAAGV 51 (231)
T ss_pred hCCcEEEEC-CCHHHHHHHHHHHHcCC
Confidence 346899999 89999999999988887
No 299
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=76.62 E-value=6.2 Score=30.24 Aligned_cols=31 Identities=32% Similarity=0.556 Sum_probs=28.0
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++||+||+.- .|..|.-..++++.+|++|.
T Consensus 77 ~~pgdkVLv~~-nG~FG~R~~~ia~~~g~~v~ 107 (383)
T COG0075 77 VEPGDKVLVVV-NGKFGERFAEIAERYGAEVV 107 (383)
T ss_pred cCCCCeEEEEe-CChHHHHHHHHHHHhCCceE
Confidence 57999999997 89999999999999998764
No 300
>COG4821 Uncharacterized protein containing SIS (Sugar ISomerase) phosphosugar binding domain [General function prediction only]
Probab=76.49 E-value=5.8 Score=27.93 Aligned_cols=38 Identities=24% Similarity=0.369 Sum_probs=31.1
Q ss_pred HhhcCCCCCCEEEEecCCc--hHHHHHHHHHHHCCCEEeC
Q psy3430 84 IVRGKMRPGESLLVHAGAG--GLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 84 ~~~~~~~~g~~vli~ga~g--~vG~~aiqla~~~G~~vi~ 121 (121)
.+...++++|.++|..-+| ++..-+..++|..||+||+
T Consensus 97 l~~~~i~~~DVliviSnSGrNpvpie~A~~~rekGa~vI~ 136 (243)
T COG4821 97 LHRLQIRPNDVLIVISNSGRNPVPIEVAEYAREKGAKVIA 136 (243)
T ss_pred HHHhcCCCCCEEEEEeCCCCCCcchHHHHHHHhcCCeEEE
Confidence 3567899999987776455 6888899999999999984
No 301
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=76.17 E-value=4.7 Score=30.29 Aligned_cols=30 Identities=23% Similarity=0.286 Sum_probs=27.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
.|.+|.|.| .|.+|...++.++..|.+|++
T Consensus 15 kgKtVGIIG-~GsIG~amA~nL~d~G~~ViV 44 (335)
T PRK13403 15 QGKTVAVIG-YGSQGHAQAQNLRDSGVEVVV 44 (335)
T ss_pred CcCEEEEEe-EcHHHHHHHHHHHHCcCEEEE
Confidence 688999999 999999999999999998863
No 302
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=76.13 E-value=4.9 Score=31.92 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=26.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|.+|.|.| .|.+|+..++.++.+|++|+
T Consensus 139 ~gktvgIiG-~G~IG~~vA~~l~~fG~~V~ 167 (526)
T PRK13581 139 YGKTLGIIG-LGRIGSEVAKRAKAFGMKVI 167 (526)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence 478999999 89999999999999999886
No 303
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=76.00 E-value=5 Score=31.84 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=26.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|.+|.|.| .|.+|...++.++.+|++|+
T Consensus 137 ~gktvgIiG-~G~IG~~vA~~l~~fG~~V~ 165 (525)
T TIGR01327 137 YGKTLGVIG-LGRIGSIVAKRAKAFGMKVL 165 (525)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence 568999999 99999999999999999886
No 304
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=75.93 E-value=5 Score=28.50 Aligned_cols=25 Identities=32% Similarity=0.445 Sum_probs=22.3
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
..+|+|.| .|++|..+++.+...|.
T Consensus 24 ~~~VlvvG-~GglGs~va~~La~~Gv 48 (240)
T TIGR02355 24 ASRVLIVG-LGGLGCAASQYLAAAGV 48 (240)
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHcCC
Confidence 47899999 89999999999988887
No 305
>TIGR02813 omega_3_PfaA polyketide-type polyunsaturated fatty acid synthase PfaA. Members of the seed for this alignment are involved in omega-3 polyunsaturated fatty acid biosynthesis, such as the protein PfaA from the eicosapentaenoic acid biosynthesis operon in Photobacterium profundum strain SS9. PfaA is encoded together with PfaB, PfaC, and PfaD, and the functions of the individual polypeptides have not yet been described. More distant homologs of PfaA, also included with the reach of this model, appear to be involved in polyketide-like biosynthetic mechanisms of polyunsaturated fatty acid biosynthesis, an alternative to the more familiar iterated mechanism of chain extension and desaturation, and in most cases are encoded near genes for homologs of PfaB, PfaC, and/or PfaD.
Probab=75.92 E-value=5.4 Score=37.65 Aligned_cols=32 Identities=19% Similarity=0.284 Sum_probs=25.0
Q ss_pred CCCCCEEEEecCCchHHHHHHH-HHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAIS-IALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiq-la~~~G~~vi 120 (121)
+.+++.+||+|+++|+|...++ +++..|++++
T Consensus 1994 l~~g~vvLVTGGarGIG~aiA~~LA~~~ga~vi 2026 (2582)
T TIGR02813 1994 LNSDDVFLVTGGAKGVTFECALELAKQCQAHFI 2026 (2582)
T ss_pred cCCCCEEEEeCCCCHHHHHHHHHHHHhcCCEEE
Confidence 4578899999999999986654 5555578875
No 306
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=75.87 E-value=11 Score=27.66 Aligned_cols=48 Identities=17% Similarity=0.129 Sum_probs=35.9
Q ss_pred cchHHHHHHHHHHhhcCCC-CCCEEEEecCCchHHHHHHHHHHH--CCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKMR-PGESLLVHAGAGGLGQAAISIALH--MGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~~-~g~~vli~ga~g~vG~~aiqla~~--~G~~vi 120 (121)
+|++....+..| +..++. .|.+++|.|.+.-+|.=+..+... .+++|+
T Consensus 138 ~PcTp~av~~ll-~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atVt 188 (284)
T PRK14193 138 LPCTPRGIVHLL-RRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATVT 188 (284)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEEE
Confidence 455555555555 444544 699999999999999999998877 688875
No 307
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=74.92 E-value=3.3 Score=31.63 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=29.1
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
+-+|+.++|.| -|-+|.-..+.++.+||+|++
T Consensus 206 liaGK~vVV~G-YG~vGrG~A~~~rg~GA~ViV 237 (420)
T COG0499 206 LLAGKNVVVAG-YGWVGRGIAMRLRGMGARVIV 237 (420)
T ss_pred eecCceEEEec-ccccchHHHHHhhcCCCeEEE
Confidence 35899999998 999999999999999999875
No 308
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=74.91 E-value=7 Score=27.43 Aligned_cols=33 Identities=27% Similarity=0.381 Sum_probs=27.0
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+...+++|++||=.| +|.|..++-+|+..+ +|+
T Consensus 66 ~~L~~~~g~~VLEIG--tGsGY~aAvla~l~~-~V~ 98 (209)
T COG2518 66 QLLELKPGDRVLEIG--TGSGYQAAVLARLVG-RVV 98 (209)
T ss_pred HHhCCCCCCeEEEEC--CCchHHHHHHHHHhC-eEE
Confidence 678899999999998 456888888888877 543
No 309
>PF05706 CDKN3: Cyclin-dependent kinase inhibitor 3 (CDKN3); InterPro: IPR022778 This entry represents a domain found in cyclin-dependent kinase inhibitor 3 or kinase associated phosphatase proteins from several mammalian species. The cyclin-dependent kinase (Cdk)-associated protein phosphatase (KAP) is a human dual specificity protein phosphatase that dephosphorylates Cdk2 on threonine 160 in a cyclin-dependent manner [], []. This domain is also found in MAP kinase phosphatase and esterases. This entry contains both eukaryotic and bacterial proteins.; GO: 0004721 phosphoprotein phosphatase activity, 0004725 protein tyrosine phosphatase activity; PDB: 1FQ1_A 1FPZ_F.
Probab=74.45 E-value=8 Score=26.21 Aligned_cols=29 Identities=34% Similarity=0.686 Sum_probs=20.4
Q ss_pred CCCCCCEEEEe--cCCchHHHHHHHHHHHCC
Q psy3430 88 KMRPGESLLVH--AGAGGLGQAAISIALHMG 116 (121)
Q Consensus 88 ~~~~g~~vli~--ga~g~vG~~aiqla~~~G 116 (121)
.++.|++|+|| |+.|-.|+.|+.+...++
T Consensus 129 ~L~~g~~V~vHC~GGlGRtGlvAAcLLl~L~ 159 (168)
T PF05706_consen 129 RLENGRKVLVHCRGGLGRTGLVAACLLLELG 159 (168)
T ss_dssp HHHTT--EEEE-SSSSSHHHHHHHHHHHHH-
T ss_pred HHHcCCEEEEECCCCCCHHHHHHHHHHHHHc
Confidence 35679999999 667888888888876655
No 310
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=74.28 E-value=9.4 Score=29.12 Aligned_cols=49 Identities=12% Similarity=-0.038 Sum_probs=35.2
Q ss_pred hcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHH--HHHHHHHHHCCCEEe
Q psy3430 71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLG--QAAISIALHMGCTVY 120 (121)
Q Consensus 71 ~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG--~~aiqla~~~G~~vi 120 (121)
....++.|...++.-...+-+|+++.|.| ..++| ..+.|+++...+.++
T Consensus 136 ~~~~pL~TGirvID~l~Pi~kGqr~~I~G-~~G~GKT~L~~~Iak~~~~dvv 186 (369)
T cd01134 136 PPNEPLLTGQRVLDTLFPVVKGGTAAIPG-PFGCGKTVIQQSLSKYSNSDIV 186 (369)
T ss_pred CCCCchhccchhhhccccccCCCEEEEEC-CCCCChHHHHHHHHhCCCCCEE
Confidence 34456788888997788899999999999 44555 334577777665443
No 311
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=74.26 E-value=6.3 Score=33.96 Aligned_cols=30 Identities=23% Similarity=0.220 Sum_probs=26.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..|.+|+|.| +|+.|+.++..+...|.+|+
T Consensus 381 ~tgKKVaVVG-aGPAGLsAA~~La~~Gh~Vt 410 (1028)
T PRK06567 381 PTNYNILVTG-LGPAGFSLSYYLLRSGHNVT 410 (1028)
T ss_pred CCCCeEEEEC-cCHHHHHHHHHHHhCCCeEE
Confidence 4688999999 89999999999988998875
No 312
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=74.19 E-value=5.8 Score=30.67 Aligned_cols=30 Identities=27% Similarity=0.232 Sum_probs=25.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+.+|+|.| +|..|+.++..++..|.+|+
T Consensus 131 ~~~~~V~IIG-~G~aGl~aA~~l~~~G~~V~ 160 (449)
T TIGR01316 131 STHKKVAVIG-AGPAGLACASELAKAGHSVT 160 (449)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHCCCcEE
Confidence 3567899999 89999999998888898765
No 313
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=74.16 E-value=6.5 Score=32.53 Aligned_cols=30 Identities=20% Similarity=0.231 Sum_probs=26.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+.+|+|.| +|+.|+.++..++..|.+|+
T Consensus 429 ~~~~~V~IIG-aGpAGl~aA~~l~~~G~~V~ 458 (752)
T PRK12778 429 KNGKKVAVIG-SGPAGLSFAGDLAKRGYDVT 458 (752)
T ss_pred CCCCEEEEEC-cCHHHHHHHHHHHHCCCeEE
Confidence 4578999999 79999999999999998875
No 314
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=74.05 E-value=14 Score=27.24 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=35.5
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHC----CCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHM----GCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~----G~~vi 120 (121)
+|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++... +++|+
T Consensus 133 ~PcTp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVt 185 (287)
T PRK14181 133 IPCTPAGIIELL-KYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVT 185 (287)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEE
Confidence 455555555555 33343 36999999999999999999999888 78775
No 315
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.43 E-value=12 Score=27.35 Aligned_cols=48 Identities=19% Similarity=0.180 Sum_probs=36.0
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|++....+..| +..++ -.|.+++|.|.+.-+|.-...+.+..|++|.
T Consensus 132 ~PcTp~av~~ll-~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt 180 (279)
T PRK14178 132 APCTPNGIMTLL-HEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT 180 (279)
T ss_pred CCCCHHHHHHHH-HHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE
Confidence 455555455455 44444 3799999999888999999999999999875
No 316
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=73.07 E-value=13 Score=27.52 Aligned_cols=48 Identities=21% Similarity=0.267 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHC----CCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHM----GCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~----G~~vi 120 (121)
+|++.......| +..++ -.|.+++|.|.+.-+|.=...++... +++|.
T Consensus 141 ~PcTp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVt 193 (297)
T PRK14168 141 LPCTPAGIQEML-VRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVT 193 (297)
T ss_pred cCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEE
Confidence 455555555555 33343 47999999999999999999999887 68775
No 317
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=73.03 E-value=13 Score=28.18 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=35.3
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|++.......| +..++ -.|.+++|.|.+.-+|.=+..++...+|+|+
T Consensus 194 ~PCTp~avi~LL-~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVT 242 (345)
T PLN02897 194 VSCTPKGCVELL-IRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVS 242 (345)
T ss_pred cCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEE
Confidence 344444444444 33343 4799999999999999999999999999875
No 318
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=72.95 E-value=13 Score=28.33 Aligned_cols=48 Identities=19% Similarity=0.137 Sum_probs=35.6
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+|++.......| +..++ -.|++++|.|.+.-+|.=+..++...+|+|+
T Consensus 211 ~PCTp~avielL-~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVT 259 (364)
T PLN02616 211 VPCTPKGCIELL-HRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVS 259 (364)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEE
Confidence 344444444444 33343 3799999999999999999999999999886
No 319
>PRK08605 D-lactate dehydrogenase; Validated
Probab=72.75 E-value=6.5 Score=29.30 Aligned_cols=29 Identities=24% Similarity=0.253 Sum_probs=24.8
Q ss_pred CCCEEEEecCCchHHHHHHHHH-HHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIA-LHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla-~~~G~~vi 120 (121)
.|.+|.|.| .|.+|...++.+ +.+|.+|+
T Consensus 145 ~g~~VgIIG-~G~IG~~vA~~L~~~~g~~V~ 174 (332)
T PRK08605 145 KDLKVAVIG-TGRIGLAVAKIFAKGYGSDVV 174 (332)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhcCCCEEE
Confidence 478899999 899999998887 67788875
No 320
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=72.66 E-value=15 Score=27.18 Aligned_cols=48 Identities=15% Similarity=0.173 Sum_probs=35.0
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHC----CCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHM----GCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~----G~~vi 120 (121)
.|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++... +++|.
T Consensus 137 ~PcTp~avi~lL-~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt 189 (297)
T PRK14167 137 KPCTPHGIQKLL-AAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT 189 (297)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE
Confidence 355544444445 44444 47999999999999999999998877 78775
No 321
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=72.65 E-value=8.2 Score=28.64 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=26.2
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+.+++|+|.| +|..|+.++..++..|.+|+
T Consensus 14 ~~~~~~~VvIIG-~G~aGl~aA~~l~~~g~~v~ 45 (352)
T PRK12770 14 PPPTGKKVAIIG-AGPAGLAAAGYLACLGYEVH 45 (352)
T ss_pred CCCCCCEEEEEC-cCHHHHHHHHHHHHCCCcEE
Confidence 345678999999 78999999988888887664
No 322
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=72.56 E-value=25 Score=25.49 Aligned_cols=29 Identities=17% Similarity=0.255 Sum_probs=20.6
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
.+++++||-.| +|. |..++.+++ .|+ +|+
T Consensus 157 ~~~g~~VLDvG-cGs-G~lai~aa~-~g~~~V~ 186 (288)
T TIGR00406 157 DLKDKNVIDVG-CGS-GILSIAALK-LGAAKVV 186 (288)
T ss_pred cCCCCEEEEeC-CCh-hHHHHHHHH-cCCCeEE
Confidence 45789999998 555 877777665 455 554
No 323
>PRK12831 putative oxidoreductase; Provisional
Probab=72.38 E-value=7.5 Score=30.25 Aligned_cols=31 Identities=26% Similarity=0.443 Sum_probs=26.8
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
...+++|+|.| +|.+|.-+++.+..+|++|.
T Consensus 278 ~~~gk~VvVIG-gG~va~d~A~~l~r~Ga~Vt 308 (464)
T PRK12831 278 IKVGKKVAVVG-GGNVAMDAARTALRLGAEVH 308 (464)
T ss_pred ccCCCeEEEEC-CcHHHHHHHHHHHHcCCEEE
Confidence 46789999999 78999999999999999764
No 324
>PRK04148 hypothetical protein; Provisional
Probab=72.26 E-value=7.1 Score=25.42 Aligned_cols=31 Identities=10% Similarity=0.027 Sum_probs=22.1
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
-.++.++++.| .| .|...++.++..|.+|++
T Consensus 14 ~~~~~kileIG-~G-fG~~vA~~L~~~G~~Via 44 (134)
T PRK04148 14 KGKNKKIVELG-IG-FYFKVAKKLKESGFDVIV 44 (134)
T ss_pred cccCCEEEEEE-ec-CCHHHHHHHHHCCCEEEE
Confidence 34568899999 77 887555555577888864
No 325
>TIGR01042 V-ATPase_V1_A V-type (H+)-ATPase V1, A subunit. This models eukaryotic vacuolar (H+)-ATPase that is responsible for acidifying cellular compartments. This enzyme shares extensive sequence similarity with archaeal ATP synthase.
Probab=72.23 E-value=17 Score=29.55 Aligned_cols=52 Identities=17% Similarity=0.047 Sum_probs=38.3
Q ss_pred HHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHH--HHHHHCCCEEe
Q psy3430 68 EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAI--SIALHMGCTVY 120 (121)
Q Consensus 68 ~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~ai--qla~~~G~~vi 120 (121)
+=.....++.|...++.-...+-+|.++.|.| ..++|...+ |++|...+.|+
T Consensus 202 ~R~~~~~PL~TG~RvID~lfPi~kGqr~~I~g-g~G~GKT~l~~~lak~s~aDvi 255 (591)
T TIGR01042 202 EKLPANTPLLTGQRVLDALFPCVQGGTTAIPG-AFGCGKTVISQSLSKYSNSDAI 255 (591)
T ss_pred hccCCCCccccchhhhhhccchhcCCeEEEEc-CCCcCHHHHHHHHHhccCcCEE
Confidence 33455567889999998888999999999999 556675444 56666666554
No 326
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=72.00 E-value=25 Score=26.62 Aligned_cols=29 Identities=21% Similarity=0.297 Sum_probs=24.9
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+|.|.|+.|.+|....+.++..|.+|.
T Consensus 98 ~~~I~IiGG~GlmG~slA~~l~~~G~~V~ 126 (374)
T PRK11199 98 LRPVVIVGGKGQLGRLFAKMLTLSGYQVR 126 (374)
T ss_pred cceEEEEcCCChhhHHHHHHHHHCCCeEE
Confidence 46899999899999999999998887664
No 327
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=71.93 E-value=16 Score=27.07 Aligned_cols=48 Identities=17% Similarity=0.246 Sum_probs=35.3
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHC----CCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHM----GCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~----G~~vi 120 (121)
.|++....+..| +..++ -.|.+++|.|.+.-+|.=+..++... +|+|+
T Consensus 137 ~PcTp~av~~lL-~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt 189 (293)
T PRK14185 137 VSATPNGILELL-KRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT 189 (293)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE
Confidence 455555555555 33444 47999999999999999999999887 67775
No 328
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=71.80 E-value=13 Score=25.17 Aligned_cols=34 Identities=26% Similarity=0.527 Sum_probs=26.5
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCC--CEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMG--CTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G--~~vi 120 (121)
....++++++|+-.| +|. |.+++++++..+ .+|+
T Consensus 34 ~~l~~~~~~~vlDlG-~Gt-G~~s~~~a~~~~~~~~v~ 69 (198)
T PRK00377 34 SKLRLRKGDMILDIG-CGT-GSVTVEASLLVGETGKVY 69 (198)
T ss_pred HHcCCCCcCEEEEeC-CcC-CHHHHHHHHHhCCCCEEE
Confidence 456788999999998 565 899999988764 4554
No 329
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=71.24 E-value=6.8 Score=33.78 Aligned_cols=30 Identities=27% Similarity=0.232 Sum_probs=26.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+++|+|.| +|+.|+.++..++..|.+|+
T Consensus 537 ~tgKkVaIIG-gGPAGLsAA~~Lar~G~~Vt 566 (1019)
T PRK09853 537 GSRKKVAVIG-AGPAGLAAAYFLARAGHPVT 566 (1019)
T ss_pred CCCCcEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 4578999999 89999999999999998775
No 330
>TIGR01744 XPRTase xanthine phosphoribosyltransferase. This model represent a xanthine-specific phosphoribosyltransferase of Bacillus subtilis and closely related proteins from other species, mostly from other Gram-positive bacteria. The adjacent gene is a xanthine transporter; B. subtilis can import xanthine for the purine salvage pathway or for catabolism to obtain nitrogen.
Probab=70.86 E-value=12 Score=25.69 Aligned_cols=32 Identities=16% Similarity=0.324 Sum_probs=27.2
Q ss_pred CCCCCEEEEe---cCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVH---AGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~---ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++|++|+|. =++|+.=.+++++++..|++|.
T Consensus 114 l~~G~rVLIVDDvvtTGgT~~a~~~ll~~aGa~Vv 148 (191)
T TIGR01744 114 LSDQDRVLIIDDFLANGQAAHGLVDIAKQAGAKIA 148 (191)
T ss_pred CCCcCEEEEEEehhccChHHHHHHHHHHHCCCEEE
Confidence 5799999887 3488889999999999999864
No 331
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=70.51 E-value=16 Score=26.89 Aligned_cols=48 Identities=19% Similarity=0.113 Sum_probs=35.5
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHH----CCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALH----MGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~----~G~~vi 120 (121)
+|++....+..| +..++ -.|.+++|.|.+.-+|.=+..+... .+|+|+
T Consensus 137 ~PcTp~av~~lL-~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt 189 (286)
T PRK14184 137 RPCTPAGVMTLL-ERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT 189 (286)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE
Confidence 455555555555 44444 3699999999999999999999987 788875
No 332
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=70.41 E-value=7.1 Score=27.94 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=21.5
Q ss_pred EEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 94 SLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 94 ~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|+|.| +|+.|+++...+...|.+|+
T Consensus 27 DVvIVG-gGpAGl~AA~~la~~G~~V~ 52 (257)
T PRK04176 27 DVAIVG-AGPSGLTAAYYLAKAGLKVA 52 (257)
T ss_pred CEEEEC-ccHHHHHHHHHHHhCCCeEE
Confidence 478888 89999988888877888875
No 333
>PLN03013 cysteine synthase
Probab=70.35 E-value=17 Score=28.37 Aligned_cols=36 Identities=31% Similarity=0.470 Sum_probs=29.5
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+...+++|+..+|...+|..|++....++.+|.+++
T Consensus 167 ~~G~l~pG~~~VVeaSSGN~G~ALA~~a~~~G~~~~ 202 (429)
T PLN03013 167 QKGFISPGKSVLVEPTSGNTGIGLAFIAASRGYRLI 202 (429)
T ss_pred HcCCcCCCCcEEEEECCcHHHHHHHHHHHHcCCCEE
Confidence 556678886666777799999999999999998654
No 334
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=70.25 E-value=9.1 Score=29.59 Aligned_cols=31 Identities=26% Similarity=0.408 Sum_probs=26.5
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
...|++|+|.| .|.+|.-++..+..+|++|.
T Consensus 269 ~~~gk~VvVIG-gG~~a~d~A~~l~~~G~~Vt 299 (449)
T TIGR01316 269 VYAGKSVVVIG-GGNTAVDSARTALRLGAEVH 299 (449)
T ss_pred ccCCCeEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence 34689999999 78999999999999998764
No 335
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=70.22 E-value=16 Score=28.44 Aligned_cols=59 Identities=19% Similarity=0.300 Sum_probs=39.1
Q ss_pred EEcCCCCCHHHHhhcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430 58 WEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT 118 (121)
Q Consensus 58 ~~~p~~~~~~~aa~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~ 118 (121)
..+|-.-|+.+.. -...+..-+.++.-..+--...+|+++| +|.-|.+++.+.+..|.+
T Consensus 166 ~~IPvFhDDqqGT-aiv~lA~llnalk~~gk~l~d~kiv~~G-AGAAgiaia~~l~~~g~~ 224 (432)
T COG0281 166 MNIPVFHDDQQGT-AIVTLAALLNALKLTGKKLKDQKIVING-AGAAGIAIADLLVAAGVK 224 (432)
T ss_pred CCCCcccccccHH-HHHHHHHHHHHHHHhCCCccceEEEEeC-CcHHHHHHHHHHHHhCCC
Confidence 3445444444443 2334555666774445545667888888 899999999999999874
No 336
>PRK09219 xanthine phosphoribosyltransferase; Validated
Probab=70.14 E-value=12 Score=25.65 Aligned_cols=33 Identities=21% Similarity=0.314 Sum_probs=27.3
Q ss_pred CCCCCCEEEEec---CCchHHHHHHHHHHHCCCEEe
Q psy3430 88 KMRPGESLLVHA---GAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 88 ~~~~g~~vli~g---a~g~vG~~aiqla~~~G~~vi 120 (121)
.+++|++|+|.- ++|+.=.+++++++..|++|+
T Consensus 113 ~i~~G~rVlIVDDviaTGgT~~a~~~lv~~aGa~vv 148 (189)
T PRK09219 113 FLSEGDRVLIIDDFLANGQAALGLIDIIEQAGAKVA 148 (189)
T ss_pred hCCCCCEEEEEeehhhcChHHHHHHHHHHHCCCEEE
Confidence 467999998873 478888999999999999875
No 337
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=70.11 E-value=5.8 Score=31.17 Aligned_cols=27 Identities=26% Similarity=0.342 Sum_probs=22.3
Q ss_pred EEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 94 SLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 94 ~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
-|+|.| +|..|+++.--|+..|++|++
T Consensus 63 DVvVVG-~G~AGl~AAi~Aa~~Ga~Viv 89 (506)
T PRK06481 63 DIVIVG-AGGAGMSAAIEAKDAGMNPVI 89 (506)
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCCEEE
Confidence 388888 899999888888888998763
No 338
>KOG0029|consensus
Probab=69.98 E-value=7.2 Score=30.92 Aligned_cols=30 Identities=23% Similarity=0.261 Sum_probs=25.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
+..+|.|.| +|-.|++|+.-++..|.+|++
T Consensus 14 ~~~~VIVIG-AGiaGLsAArqL~~~G~~V~V 43 (501)
T KOG0029|consen 14 KKKKVIVIG-AGLAGLSAARQLQDFGFDVLV 43 (501)
T ss_pred CCCcEEEEC-CcHHHHHHHHHHHHcCCceEE
Confidence 345788998 899999999999999998764
No 339
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=69.98 E-value=6.5 Score=29.59 Aligned_cols=27 Identities=11% Similarity=0.123 Sum_probs=22.1
Q ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 93 ESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 93 ~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-.|+|.| +|..|++++..+...|.+|.
T Consensus 19 ~dV~IvG-aG~aGl~~A~~L~~~G~~v~ 45 (415)
T PRK07364 19 YDVAIVG-GGIVGLTLAAALKDSGLRIA 45 (415)
T ss_pred cCEEEEC-cCHHHHHHHHHHhcCCCEEE
Confidence 3588998 79999988888888888765
No 340
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=69.84 E-value=7.3 Score=32.04 Aligned_cols=31 Identities=23% Similarity=0.158 Sum_probs=26.5
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.++..+|+|.| +|..|++++..++..|.+|.
T Consensus 78 ~~~~~~VlIVG-gGIaGLalAlaL~r~Gi~V~ 108 (668)
T PLN02927 78 KKKKSRVLVAG-GGIGGLVFALAAKKKGFDVL 108 (668)
T ss_pred ccCCCCEEEEC-CCHHHHHHHHHHHhcCCeEE
Confidence 35667899999 79999999999999998765
No 341
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=69.49 E-value=9.9 Score=27.06 Aligned_cols=26 Identities=35% Similarity=0.422 Sum_probs=22.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
...+|+|.| .|++|..+++.+...|.
T Consensus 31 ~~~~VliiG-~GglGs~va~~La~~Gv 56 (245)
T PRK05690 31 KAARVLVVG-LGGLGCAASQYLAAAGV 56 (245)
T ss_pred cCCeEEEEC-CCHHHHHHHHHHHHcCC
Confidence 347899999 79999999999988886
No 342
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=69.40 E-value=8.7 Score=29.68 Aligned_cols=30 Identities=27% Similarity=0.315 Sum_probs=25.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+.+|+|.| +|..|+.++..+...|.+|+
T Consensus 138 ~~~~~VvIIG-gGpaGl~aA~~l~~~g~~V~ 167 (457)
T PRK11749 138 KTGKKVAVIG-AGPAGLTAAHRLARKGYDVT 167 (457)
T ss_pred cCCCcEEEEC-CCHHHHHHHHHHHhCCCeEE
Confidence 4567899999 79999999988888888765
No 343
>KOG1014|consensus
Probab=69.32 E-value=9.1 Score=28.51 Aligned_cols=30 Identities=27% Similarity=0.406 Sum_probs=24.0
Q ss_pred CCCCEEEEecCCchHHHHHH-HHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAI-SIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~ai-qla~~~G~~vi 120 (121)
+.|++.+|+||+.++|..-+ ++|| .|.+|+
T Consensus 47 ~~g~WAVVTGaTDGIGKayA~eLAk-rG~nvv 77 (312)
T KOG1014|consen 47 KLGSWAVVTGATDGIGKAYARELAK-RGFNVV 77 (312)
T ss_pred hcCCEEEEECCCCcchHHHHHHHHH-cCCEEE
Confidence 45799999999999997655 6666 888764
No 344
>PRK07121 hypothetical protein; Validated
Probab=68.69 E-value=7.4 Score=30.34 Aligned_cols=27 Identities=26% Similarity=0.293 Sum_probs=21.4
Q ss_pred EEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 94 SLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 94 ~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
-|+|.| +|..|+.+.--|...|++|++
T Consensus 22 DVvVVG-aG~AGl~AA~~aae~G~~Vil 48 (492)
T PRK07121 22 DVVVVG-FGAAGACAAIEAAAAGARVLV 48 (492)
T ss_pred CEEEEC-cCHHHHHHHHHHHHCCCeEEE
Confidence 388888 899998887777778988863
No 345
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=68.35 E-value=9.6 Score=27.71 Aligned_cols=26 Identities=23% Similarity=0.321 Sum_probs=22.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
.+.+|+|.| .|++|..++..+...|.
T Consensus 29 ~~s~VlVvG-~GGVGs~vae~Lar~GV 54 (268)
T PRK15116 29 ADAHICVVG-IGGVGSWAAEALARTGI 54 (268)
T ss_pred cCCCEEEEC-cCHHHHHHHHHHHHcCC
Confidence 457899999 89999999999988885
No 346
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=67.92 E-value=10 Score=26.49 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=22.3
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
..+|+|.| +|++|..+++.+...|.
T Consensus 21 ~~~VlivG-~GglGs~va~~La~~Gv 45 (228)
T cd00757 21 NARVLVVG-AGGLGSPAAEYLAAAGV 45 (228)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCC
Confidence 47899999 89999999999988887
No 347
>PRK08223 hypothetical protein; Validated
Probab=67.75 E-value=8.9 Score=28.22 Aligned_cols=26 Identities=15% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
...+|+|.| +|++|..+++.+...|.
T Consensus 26 ~~s~VlIvG-~GGLGs~va~~LA~aGV 51 (287)
T PRK08223 26 RNSRVAIAG-LGGVGGIHLLTLARLGI 51 (287)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHhCC
Confidence 457899999 89999999999988887
No 348
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=67.70 E-value=19 Score=26.54 Aligned_cols=49 Identities=18% Similarity=0.175 Sum_probs=37.2
Q ss_pred hcchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 71 TIPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 71 ~l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+||+.......| +..++ -.|.+++|.|.+--+|.=..+++...+++|.
T Consensus 135 ~~PCTp~gi~~ll-~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt 184 (283)
T COG0190 135 FLPCTPAGIMTLL-EEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVT 184 (283)
T ss_pred CCCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE
Confidence 3455555555555 44444 4799999999888999999999999999875
No 349
>TIGR01138 cysM cysteine synthase B. Alternate name: O-acetylserine (thiol)-lyase
Probab=67.60 E-value=29 Score=25.28 Aligned_cols=35 Identities=31% Similarity=0.503 Sum_probs=27.5
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+...+.+++.|+-. .+|..|.++...|+.+|.+++
T Consensus 52 ~~g~~~~g~~vv~a-SsGN~g~alA~~a~~~G~~~~ 86 (290)
T TIGR01138 52 KRGEIKPGDVLIEA-TSGNTGIALAMIAALKGYRMK 86 (290)
T ss_pred HcCCCCCCCEEEEE-CCChHHHHHHHHHHHcCCeEE
Confidence 45566778876554 589999999999999998754
No 350
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=67.58 E-value=9.6 Score=28.94 Aligned_cols=26 Identities=35% Similarity=0.479 Sum_probs=22.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
...+|+|.| +|++|..+++.+...|.
T Consensus 40 ~~~~VliiG-~GglG~~v~~~La~~Gv 65 (370)
T PRK05600 40 HNARVLVIG-AGGLGCPAMQSLASAGV 65 (370)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCC
Confidence 456899999 89999999999998887
No 351
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=67.23 E-value=10 Score=21.26 Aligned_cols=23 Identities=30% Similarity=0.221 Sum_probs=14.4
Q ss_pred EecCCchHHHHHHHHHHHCCCEEe
Q psy3430 97 VHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 97 i~ga~g~vG~~aiqla~~~G~~vi 120 (121)
|.| +|..|+.+...++..|.+|.
T Consensus 1 IiG-aG~sGl~aA~~L~~~g~~v~ 23 (68)
T PF13450_consen 1 IIG-AGISGLAAAYYLAKAGYRVT 23 (68)
T ss_dssp EES--SHHHHHHHHHHHHTTSEEE
T ss_pred CEe-eCHHHHHHHHHHHHCCCcEE
Confidence 445 67777777777766676654
No 352
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=67.10 E-value=8.7 Score=27.50 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=21.7
Q ss_pred EEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 94 SLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 94 ~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|+|.| +|+.|+++...+...|.+|+
T Consensus 23 DVvIVG-gGpAGL~aA~~la~~G~~V~ 48 (254)
T TIGR00292 23 DVIIVG-AGPSGLTAAYYLAKNGLKVC 48 (254)
T ss_pred CEEEEC-CCHHHHHHHHHHHHCCCcEE
Confidence 388888 89999999988888888765
No 353
>PTZ00188 adrenodoxin reductase; Provisional
Probab=67.04 E-value=11 Score=29.90 Aligned_cols=30 Identities=13% Similarity=-0.032 Sum_probs=23.8
Q ss_pred CCCCEEEEecCCchHHHHHHH-HHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAIS-IALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiq-la~~~G~~vi 120 (121)
....+|.|.| +|+.|+.+++ +++..|.+|.
T Consensus 37 ~~~krVAIVG-aGPAGlyaA~~Ll~~~g~~Vt 67 (506)
T PTZ00188 37 AKPFKVGIIG-AGPSALYCCKHLLKHERVKVD 67 (506)
T ss_pred CCCCEEEEEC-CcHHHHHHHHHHHHhcCCeEE
Confidence 3467899999 8999999876 6767787664
No 354
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=66.76 E-value=11 Score=26.25 Aligned_cols=26 Identities=23% Similarity=0.318 Sum_probs=22.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
...+|+|.| +|++|..+++.+...|.
T Consensus 27 ~~~~V~ViG-~GglGs~ia~~La~~Gv 52 (212)
T PRK08644 27 KKAKVGIAG-AGGLGSNIAVALARSGV 52 (212)
T ss_pred hCCCEEEEC-cCHHHHHHHHHHHHcCC
Confidence 346799999 89999999998888887
No 355
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=66.66 E-value=8.5 Score=26.83 Aligned_cols=30 Identities=27% Similarity=0.392 Sum_probs=20.2
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCC
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMG 116 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G 116 (121)
+...+++|++||-.|. |.|..+.-+++..|
T Consensus 66 ~~L~l~pg~~VLeIGt--GsGY~aAlla~lvg 95 (209)
T PF01135_consen 66 EALDLKPGDRVLEIGT--GSGYQAALLAHLVG 95 (209)
T ss_dssp HHTTC-TT-EEEEES---TTSHHHHHHHHHHS
T ss_pred HHHhcCCCCEEEEecC--CCcHHHHHHHHhcC
Confidence 6677999999999983 44666666666655
No 356
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=66.57 E-value=9.8 Score=32.77 Aligned_cols=29 Identities=21% Similarity=0.203 Sum_probs=25.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+|+|.| +|+.|+.++..+...|.+|+
T Consensus 429 ~~~kVaIIG-~GPAGLsaA~~La~~G~~Vt 457 (1006)
T PRK12775 429 KLGKVAICG-SGPAGLAAAADLVKYGVDVT 457 (1006)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCcEE
Confidence 467899999 89999999988888898775
No 357
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=66.54 E-value=12 Score=25.89 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=21.8
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
..+|+|.| +|++|..+++.+...|.
T Consensus 21 ~~~V~IvG-~GglGs~ia~~La~~Gv 45 (200)
T TIGR02354 21 QATVAICG-LGGLGSNVAINLARAGI 45 (200)
T ss_pred CCcEEEEC-cCHHHHHHHHHHHHcCC
Confidence 46799999 89999999998888887
No 358
>KOG0069|consensus
Probab=66.53 E-value=37 Score=25.63 Aligned_cols=28 Identities=21% Similarity=0.415 Sum_probs=24.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCT 118 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~ 118 (121)
..|++|.|.| .|.+|+...|-++.+|+.
T Consensus 160 ~~gK~vgilG-~G~IG~~ia~rL~~Fg~~ 187 (336)
T KOG0069|consen 160 LEGKTVGILG-LGRIGKAIAKRLKPFGCV 187 (336)
T ss_pred ccCCEEEEec-CcHHHHHHHHhhhhccce
Confidence 3578999999 899999999999998843
No 359
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=66.52 E-value=9.9 Score=32.83 Aligned_cols=29 Identities=24% Similarity=0.202 Sum_probs=25.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+|+|.| +|+-|+.++..++..|.+|+
T Consensus 536 ~~kkVaIIG-GGPAGLSAA~~LAr~G~~VT 564 (1012)
T TIGR03315 536 SAHKVAVIG-AGPAGLSAGYFLARAGHPVT 564 (1012)
T ss_pred CCCcEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence 357899999 89999999999998998775
No 360
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=66.15 E-value=8.2 Score=30.41 Aligned_cols=27 Identities=30% Similarity=0.241 Sum_probs=23.4
Q ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 93 ESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 93 ~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-.|+|.| +|+.|+.++..++..|.+++
T Consensus 212 ~dvvIIG-gGpaGl~aA~~la~~G~~v~ 238 (517)
T PRK15317 212 YDVLVVG-GGPAGAAAAIYAARKGIRTG 238 (517)
T ss_pred CCEEEEC-CCHHHHHHHHHHHHCCCcEE
Confidence 3588998 89999999999999998765
No 361
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=65.98 E-value=14 Score=26.13 Aligned_cols=29 Identities=24% Similarity=0.316 Sum_probs=24.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++.+|||.| .|.++.-=++.+...|++|+
T Consensus 24 ~~~~VLVVG-GG~VA~RK~~~Ll~~gA~Vt 52 (223)
T PRK05562 24 NKIKVLIIG-GGKAAFIKGKTFLKKGCYVY 52 (223)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCEEE
Confidence 577899999 78898887888888898765
No 362
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=65.43 E-value=9.9 Score=28.76 Aligned_cols=26 Identities=31% Similarity=0.396 Sum_probs=22.8
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
.+.+|+|.| +|++|..+++.+...|.
T Consensus 134 ~~~~VlvvG-~GG~Gs~ia~~La~~Gv 159 (376)
T PRK08762 134 LEARVLLIG-AGGLGSPAALYLAAAGV 159 (376)
T ss_pred hcCcEEEEC-CCHHHHHHHHHHHHcCC
Confidence 456899998 89999999999988887
No 363
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=65.28 E-value=12 Score=28.22 Aligned_cols=26 Identities=31% Similarity=0.385 Sum_probs=22.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
...+|+|.| +|++|..+++.+...|.
T Consensus 27 ~~~~VlivG-~GGlGs~~a~~La~~Gv 52 (355)
T PRK05597 27 FDAKVAVIG-AGGLGSPALLYLAGAGV 52 (355)
T ss_pred hCCeEEEEC-CCHHHHHHHHHHHHcCC
Confidence 347899999 89999999999888887
No 364
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=65.22 E-value=12 Score=28.06 Aligned_cols=26 Identities=27% Similarity=0.428 Sum_probs=22.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
...+|+|.| +|++|..+++.+...|.
T Consensus 23 ~~~~VlIiG-~GglGs~va~~La~aGv 48 (338)
T PRK12475 23 REKHVLIVG-AGALGAANAEALVRAGI 48 (338)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCC
Confidence 346799999 89999999999988887
No 365
>KOG2018|consensus
Probab=65.10 E-value=10 Score=28.69 Aligned_cols=26 Identities=27% Similarity=0.465 Sum_probs=23.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
.++.|+|.| +|++|..++.+....|+
T Consensus 73 ~~syVVVVG-~GgVGSwv~nmL~RSG~ 98 (430)
T KOG2018|consen 73 TNSYVVVVG-AGGVGSWVANMLLRSGV 98 (430)
T ss_pred cCcEEEEEe-cCchhHHHHHHHHHhcC
Confidence 578899998 89999999999999898
No 366
>PRK11761 cysM cysteine synthase B; Provisional
Probab=65.01 E-value=31 Score=25.19 Aligned_cols=35 Identities=31% Similarity=0.524 Sum_probs=27.4
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+...+.+|++|+.. .+|..|+++...|+.+|.+++
T Consensus 56 ~~g~~~~g~~vv~a-SsGN~g~alA~~a~~~G~~~~ 90 (296)
T PRK11761 56 KRGEIKPGDTLIEA-TSGNTGIALAMIAAIKGYRMK 90 (296)
T ss_pred HcCCCCCCCEEEEe-CCChHHHHHHHHHHHcCCCEE
Confidence 44556778877665 489999999999999998654
No 367
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=64.59 E-value=12 Score=28.01 Aligned_cols=26 Identities=27% Similarity=0.484 Sum_probs=22.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
...+|+|.| +|++|..+++.+...|.
T Consensus 23 ~~~~VlVvG-~GglGs~va~~La~aGv 48 (339)
T PRK07688 23 REKHVLIIG-AGALGTANAEMLVRAGV 48 (339)
T ss_pred cCCcEEEEC-CCHHHHHHHHHHHHcCC
Confidence 346799999 79999999998888887
No 368
>PRK06153 hypothetical protein; Provisional
Probab=64.38 E-value=9.9 Score=29.26 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=22.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
.+.+|+|.| +||+|..+++.+...|.
T Consensus 175 ~~~~VaIVG-~GG~GS~Va~~LAR~GV 200 (393)
T PRK06153 175 EGQRIAIIG-LGGTGSYILDLVAKTPV 200 (393)
T ss_pred hhCcEEEEc-CCccHHHHHHHHHHcCC
Confidence 457899999 89999999988888886
No 369
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=63.85 E-value=13 Score=27.44 Aligned_cols=78 Identities=21% Similarity=0.210 Sum_probs=38.0
Q ss_pred ccCCEEEEEccCCceeEEEEeCCCCeEEcCCCCCHHHHhhcchHHHHHHHHHHhh-cCCCCCCEEEEecCCchHHHHHHH
Q psy3430 32 TKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR-GKMRPGESLLVHAGAGGLGQAAIS 110 (121)
Q Consensus 32 ~~Gd~V~~~~~~g~~~~~~~v~~~~~~~~p~~~~~~~aa~l~~~~~ta~~~l~~~-~~~~~g~~vli~ga~g~vG~~aiq 110 (121)
++|++.+... +|.+|-.-+...+..+.+.+.|-. +...+|... |... .-.++|++||=.| + |.|.+++-
T Consensus 109 ~vg~~~~I~P---~w~~~~~~~~~~~I~idPg~AFGT----G~H~TT~lc-l~~l~~~~~~g~~vLDvG-~-GSGILaia 178 (295)
T PF06325_consen 109 RVGDRLVIVP---SWEEYPEPPDEIVIEIDPGMAFGT----GHHPTTRLC-LELLEKYVKPGKRVLDVG-C-GSGILAIA 178 (295)
T ss_dssp EECTTEEEEE---TT----SSTTSEEEEESTTSSS-S----SHCHHHHHH-HHHHHHHSSTTSEEEEES---TTSHHHHH
T ss_pred EECCcEEEEC---CCcccCCCCCcEEEEECCCCcccC----CCCHHHHHH-HHHHHHhccCCCEEEEeC-C-cHHHHHHH
Confidence 5677555443 466663324455677776665432 223333332 2122 1267889998777 3 33555554
Q ss_pred HHHHCCC-EEe
Q psy3430 111 IALHMGC-TVY 120 (121)
Q Consensus 111 la~~~G~-~vi 120 (121)
.+| +|+ +|+
T Consensus 179 A~k-lGA~~v~ 188 (295)
T PF06325_consen 179 AAK-LGAKKVV 188 (295)
T ss_dssp HHH-TTBSEEE
T ss_pred HHH-cCCCeEE
Confidence 444 477 454
No 370
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=63.83 E-value=12 Score=28.16 Aligned_cols=31 Identities=26% Similarity=0.481 Sum_probs=25.7
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++++++++|.| +|.+|.-++..++.+|.+|.
T Consensus 141 ~~~~~~vvViG-gG~ig~E~A~~l~~~g~~Vt 171 (396)
T PRK09754 141 LQPERSVVIVG-AGTIGLELAASATQRRCKVT 171 (396)
T ss_pred hhcCCeEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 45688999999 78999888888888888764
No 371
>PLN02556 cysteine synthase/L-3-cyanoalanine synthase
Probab=63.75 E-value=28 Score=26.39 Aligned_cols=36 Identities=19% Similarity=0.408 Sum_probs=29.1
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+...+++|...+|...+|..|+++.-.|+.+|.+++
T Consensus 103 ~~G~i~pG~~~vV~aSsGN~G~alA~~a~~~G~~~~ 138 (368)
T PLN02556 103 KKNLITPGKTTLIEPTSGNMGISLAFMAAMKGYKMI 138 (368)
T ss_pred HcCCcCCCCCEEEEeCCchHHHHHHHHHHHcCCCEE
Confidence 456678887667777789999999999999998654
No 372
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=63.47 E-value=9.6 Score=30.13 Aligned_cols=27 Identities=26% Similarity=0.274 Sum_probs=22.3
Q ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 93 ESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 93 ~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-.|+|.| +|..|+++.-.+...|.+|+
T Consensus 24 ~dVlIVG-aGpaGl~lA~~L~~~G~~v~ 50 (547)
T PRK08132 24 HPVVVVG-AGPVGLALAIDLAQQGVPVV 50 (547)
T ss_pred CCEEEEC-CCHHHHHHHHHHHhCCCcEE
Confidence 3599999 89999998888888888764
No 373
>PLN02852 ferredoxin-NADP+ reductase
Probab=63.38 E-value=13 Score=29.44 Aligned_cols=30 Identities=20% Similarity=0.110 Sum_probs=23.9
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHH--CCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALH--MGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~--~G~~vi 120 (121)
..+.+|+|.| +|+-|+.++..+.. .|.+|.
T Consensus 24 ~~~~~VaIVG-aGPAGl~AA~~L~~~~~g~~Vt 55 (491)
T PLN02852 24 SEPLHVCVVG-SGPAGFYTADKLLKAHDGARVD 55 (491)
T ss_pred CCCCcEEEEC-ccHHHHHHHHHHHhhCCCCeEE
Confidence 3467899999 89999999987764 687765
No 374
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=62.99 E-value=11 Score=29.36 Aligned_cols=26 Identities=19% Similarity=0.254 Sum_probs=22.2
Q ss_pred EEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 94 SLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 94 ~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|+|.| +|+.|.++...+...|.+|.
T Consensus 41 DViIVG-aGPAG~~aA~~LA~~G~~Vl 66 (450)
T PLN00093 41 RVAVIG-GGPAGACAAETLAKGGIETF 66 (450)
T ss_pred eEEEEC-CCHHHHHHHHHHHhCCCcEE
Confidence 588998 89999999988888898775
No 375
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=62.38 E-value=10 Score=30.90 Aligned_cols=26 Identities=23% Similarity=0.305 Sum_probs=20.5
Q ss_pred EEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 94 SLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 94 ~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-|+|.| +|.-|++|.--|+..|++|+
T Consensus 37 DVlVVG-~G~AGl~AAi~Aae~G~~Vi 62 (640)
T PRK07573 37 DVIVVG-TGLAGASAAATLGELGYNVK 62 (640)
T ss_pred CEEEEC-ccHHHHHHHHHHHHcCCcEE
Confidence 388888 88899877777777788776
No 376
>PLN00106 malate dehydrogenase
Probab=62.18 E-value=15 Score=27.36 Aligned_cols=25 Identities=28% Similarity=0.318 Sum_probs=21.0
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCC
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMG 116 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G 116 (121)
..+|.|.|++|.+|..+...+...+
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~ 42 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNP 42 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCC
Confidence 3689999988999999998887654
No 377
>PRK07804 L-aspartate oxidase; Provisional
Probab=62.09 E-value=11 Score=29.92 Aligned_cols=26 Identities=27% Similarity=0.267 Sum_probs=20.1
Q ss_pred EEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 95 LLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 95 vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
|+|.| +|.-|++++--|+..|++|++
T Consensus 19 VlVIG-~G~AGl~AAi~aae~G~~Vil 44 (541)
T PRK07804 19 VVVVG-SGVAGLTAALAARRAGRRVLV 44 (541)
T ss_pred EEEEC-ccHHHHHHHHHHHHcCCeEEE
Confidence 77888 788898887666667888763
No 378
>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal. In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.
Probab=61.73 E-value=11 Score=26.48 Aligned_cols=23 Identities=26% Similarity=0.343 Sum_probs=18.7
Q ss_pred ecCCchHHHHHHHHHHHCCCEEe
Q psy3430 98 HAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 98 ~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.++|++|.+.++.+...|++|+
T Consensus 21 N~SSGgIG~AIA~~la~~Ga~Vv 43 (227)
T TIGR02114 21 NHSTGHLGKIITETFLSAGHEVT 43 (227)
T ss_pred CCcccHHHHHHHHHHHHCCCEEE
Confidence 34477899999998888999876
No 379
>PRK10717 cysteine synthase A; Provisional
Probab=61.36 E-value=39 Score=24.94 Aligned_cols=35 Identities=26% Similarity=0.422 Sum_probs=26.9
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+...+++|++|+-. .+|..|+++...|+.+|.+.+
T Consensus 57 ~~g~~~~g~~vv~a-SsGN~g~alA~~a~~~G~~~~ 91 (330)
T PRK10717 57 KRGLLKPGGTIVEG-TAGNTGIGLALVAAARGYKTV 91 (330)
T ss_pred HcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCcEE
Confidence 44556778776554 489999999999999997543
No 380
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=61.24 E-value=37 Score=25.62 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=25.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
.+.++||.| +|-+|..+++.++..|+ +++
T Consensus 173 ~~k~vLvIG-aGem~~l~a~~L~~~g~~~i~ 202 (338)
T PRK00676 173 KKASLLFIG-YSEINRKVAYYLQRQGYSRIT 202 (338)
T ss_pred cCCEEEEEc-ccHHHHHHHHHHHHcCCCEEE
Confidence 578999999 79999999999999986 454
No 381
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=60.94 E-value=11 Score=30.55 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=20.6
Q ss_pred EEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 95 LLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 95 vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
|||.| +|.-|++|+--|...|++|++
T Consensus 32 VlVIG-~G~AGl~AAi~Aa~~G~~V~l 57 (617)
T PTZ00139 32 AVVVG-AGGAGLRAALGLVELGYKTAC 57 (617)
T ss_pred EEEEC-ccHHHHHHHHHHHHcCCcEEE
Confidence 88888 899999777767677888763
No 382
>PF08541 ACP_syn_III_C: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ; InterPro: IPR013747 This domain is found on 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III 2.3.1.41 from EC, the enzyme responsible for initiating the chain of reactions of the fatty acid synthase in plants and bacteria. ; GO: 0016747 transferase activity, transferring acyl groups other than amino-acyl groups, 0008610 lipid biosynthetic process; PDB: 3IL3_A 1ZOW_C 3GWE_B 3GWA_B 1UB7_B 3LED_B 2EBD_A 1HNJ_A 2EFT_B 1HN9_B ....
Probab=60.81 E-value=13 Score=21.67 Aligned_cols=24 Identities=17% Similarity=0.416 Sum_probs=17.4
Q ss_pred HHHHHHHHhhcCCCCCCEEEEecC
Q psy3430 77 ATAYYSLIVRGKMRPGESLLVHAG 100 (121)
Q Consensus 77 ~ta~~~l~~~~~~~~g~~vli~ga 100 (121)
..++.-..+..++++||++++.+.
T Consensus 54 ~~~L~~~~~~g~~~~Gd~vl~~~~ 77 (90)
T PF08541_consen 54 PINLADALEEGRIKPGDRVLLVGF 77 (90)
T ss_dssp HHHHHHHHHTTSSCTTEEEEEEEE
T ss_pred HHHHHHHHHcCCCCCCCEEEEEEE
Confidence 334444447778999999999874
No 383
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=60.61 E-value=36 Score=25.15 Aligned_cols=48 Identities=19% Similarity=0.228 Sum_probs=32.8
Q ss_pred cchHHHHHHHHHHhhcCC-CCCCEEEEecCCchHHHHHHHHHHH----CCCEEe
Q psy3430 72 IPVVYATAYYSLIVRGKM-RPGESLLVHAGAGGLGQAAISIALH----MGCTVY 120 (121)
Q Consensus 72 l~~~~~ta~~~l~~~~~~-~~g~~vli~ga~g~vG~~aiqla~~----~G~~vi 120 (121)
+|++....+..| +..++ -.|.+++|.|.+.-+|.=...+... .+++|.
T Consensus 139 ~PcTp~ail~ll-~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt 191 (295)
T PRK14174 139 VSCTPYGILELL-GRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT 191 (295)
T ss_pred CCCCHHHHHHHH-HHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE
Confidence 455544444444 33344 3799999999999999877777655 577764
No 384
>PLN02948 phosphoribosylaminoimidazole carboxylase
Probab=60.25 E-value=17 Score=29.28 Aligned_cols=30 Identities=27% Similarity=0.282 Sum_probs=26.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
...+|.|.| +|..|.+.++-|+.+|.+|++
T Consensus 21 ~~k~IgIIG-gGqlg~mla~aA~~lG~~Vi~ 50 (577)
T PLN02948 21 SETVVGVLG-GGQLGRMLCQAASQMGIKVKV 50 (577)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHCCCEEEE
Confidence 457899999 789999999999999998763
No 385
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=59.63 E-value=15 Score=26.66 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
+..+|+|.| .||||.+++..+...|.
T Consensus 29 ~~~~V~VvG-iGGVGSw~veALaRsGi 54 (263)
T COG1179 29 KQAHVCVVG-IGGVGSWAVEALARSGI 54 (263)
T ss_pred hhCcEEEEe-cCchhHHHHHHHHHcCC
Confidence 457899999 89999999998888776
No 386
>PRK07411 hypothetical protein; Validated
Probab=59.29 E-value=15 Score=28.04 Aligned_cols=25 Identities=28% Similarity=0.429 Sum_probs=22.4
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
..+|+|.| +|++|..+++.+...|.
T Consensus 38 ~~~VlivG-~GGlG~~va~~La~~Gv 62 (390)
T PRK07411 38 AASVLCIG-TGGLGSPLLLYLAAAGI 62 (390)
T ss_pred cCcEEEEC-CCHHHHHHHHHHHHcCC
Confidence 46899999 89999999999998887
No 387
>PLN02735 carbamoyl-phosphate synthase
Probab=59.14 E-value=8.6 Score=33.47 Aligned_cols=44 Identities=20% Similarity=0.251 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhcCCCCCCEEEEecCCchH-----------HHHHHHHHHHCCCEEe
Q psy3430 76 YATAYYSLIVRGKMRPGESLLVHAGAGGL-----------GQAAISIALHMGCTVY 120 (121)
Q Consensus 76 ~~ta~~~l~~~~~~~~g~~vli~ga~g~v-----------G~~aiqla~~~G~~vi 120 (121)
...||.+..+..+-+.=.+|||.| +|++ |..+++.++..|.+|+
T Consensus 7 ~~~~~~~~~~~~~~~~~kkVLiiG-sG~~~igqa~e~d~SG~q~~kaLke~G~~Vi 61 (1102)
T PLN02735 7 VTRAWSAATKAGKRTDLKKIMILG-AGPIVIGQACEFDYSGTQACKALKEEGYEVV 61 (1102)
T ss_pred ceecccccccCCcccCCCEEEEEC-CCccccccceeecchHHHHHHHHHHcCCEEE
Confidence 344565553332222336899999 6763 5568888899999886
No 388
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=58.82 E-value=18 Score=27.19 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=25.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++.+|.|.| .|.+|.+.++-++..|.+|+
T Consensus 16 ~gktIgIIG-~GsmG~AlA~~L~~sG~~Vv 44 (330)
T PRK05479 16 KGKKVAIIG-YGSQGHAHALNLRDSGVDVV 44 (330)
T ss_pred CCCEEEEEe-eHHHHHHHHHHHHHCCCEEE
Confidence 568899998 89999999999998888765
No 389
>TIGR01139 cysK cysteine synthase A. This model distinguishes cysteine synthase A (CysK) from cysteine synthase B (CysM). CysM differs in having a broader specificity that also allows the use of thiosulfate to produce cysteine thiosulfonate.
Probab=58.44 E-value=52 Score=23.88 Aligned_cols=35 Identities=29% Similarity=0.527 Sum_probs=27.1
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+...+.+|++| |...+|..|+++...|+.+|.+.+
T Consensus 50 ~~g~~~~g~~v-v~aSsGN~g~alA~~a~~~Gl~~~ 84 (298)
T TIGR01139 50 KRGLLKPGKTI-VEPTSGNTGIALAMVAAARGYKLI 84 (298)
T ss_pred HcCCCCCCCEE-EEeCCChhHHHHHHHHHHcCCeEE
Confidence 44556777776 555589999999999999998654
No 390
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=58.38 E-value=16 Score=27.90 Aligned_cols=26 Identities=31% Similarity=0.477 Sum_probs=22.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
...+|+|.| .|++|..+++.+...|.
T Consensus 41 ~~~~VlviG-~GGlGs~va~~La~~Gv 66 (392)
T PRK07878 41 KNARVLVIG-AGGLGSPTLLYLAAAGV 66 (392)
T ss_pred hcCCEEEEC-CCHHHHHHHHHHHHcCC
Confidence 356899999 89999999998888887
No 391
>PLN00203 glutamyl-tRNA reductase
Probab=58.11 E-value=17 Score=28.96 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=24.0
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
+.+|+|.| +|.+|.++++.+...|+ +|+
T Consensus 266 ~kkVlVIG-AG~mG~~~a~~L~~~G~~~V~ 294 (519)
T PLN00203 266 SARVLVIG-AGKMGKLLVKHLVSKGCTKMV 294 (519)
T ss_pred CCEEEEEe-CHHHHHHHHHHHHhCCCCeEE
Confidence 67899999 69999999999998887 454
No 392
>KOG1370|consensus
Probab=57.90 E-value=12 Score=28.25 Aligned_cols=30 Identities=20% Similarity=0.344 Sum_probs=26.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
.|+.++|.| -|.+|.-..|..|..|++||+
T Consensus 213 aGKv~Vv~G-YGdVGKgCaqaLkg~g~~Viv 242 (434)
T KOG1370|consen 213 AGKVAVVCG-YGDVGKGCAQALKGFGARVIV 242 (434)
T ss_pred cccEEEEec-cCccchhHHHHHhhcCcEEEE
Confidence 466677777 999999999999999999874
No 393
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=57.77 E-value=15 Score=30.27 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=24.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCT 118 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~ 118 (121)
+..+|||.| +|++|..+++.+...|.+
T Consensus 337 ~~~kVLIvG-aGGLGs~VA~~La~~GVg 363 (664)
T TIGR01381 337 SQLKVLLLG-AGTLGCNVARCLIGWGVR 363 (664)
T ss_pred hcCeEEEEC-CcHHHHHHHHHHHHcCCC
Confidence 467899999 899999999999999983
No 394
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=57.31 E-value=14 Score=30.19 Aligned_cols=26 Identities=27% Similarity=0.207 Sum_probs=20.2
Q ss_pred EEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 95 LLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 95 vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
|||.| +|.-|+.|+--|...|++|++
T Consensus 53 VlVIG-~G~AGl~AAl~Aae~G~~Vil 78 (635)
T PLN00128 53 AVVVG-AGGAGLRAAIGLSEHGFNTAC 78 (635)
T ss_pred EEEEC-ccHHHHHHHHHHHhcCCcEEE
Confidence 88998 899998776666667887763
No 395
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=57.28 E-value=21 Score=30.61 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=26.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|++|+|.| .|.+|.-++..++.+|++|+
T Consensus 446 ~Gk~VvVIG-GG~tA~D~A~ta~R~Ga~Vt 474 (944)
T PRK12779 446 KGKEVFVIG-GGNTAMDAARTAKRLGGNVT 474 (944)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence 689999999 78999999999999999865
No 396
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=56.90 E-value=30 Score=23.84 Aligned_cols=34 Identities=24% Similarity=0.209 Sum_probs=24.8
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCC--CEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMG--CTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G--~~vi 120 (121)
+...++++++||-.| .|.|..+..+++..+ .+|+
T Consensus 70 ~~l~~~~g~~VLdIG--~GsG~~t~~la~~~~~~~~V~ 105 (212)
T PRK13942 70 ELLDLKEGMKVLEIG--TGSGYHAAVVAEIVGKSGKVV 105 (212)
T ss_pred HHcCCCCcCEEEEEC--CcccHHHHHHHHhcCCCCEEE
Confidence 566789999999998 355777777777664 3554
No 397
>PLN00011 cysteine synthase
Probab=56.52 E-value=52 Score=24.34 Aligned_cols=35 Identities=31% Similarity=0.500 Sum_probs=27.5
Q ss_pred hhcCCCCC-CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPG-ESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g-~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+...+.+| ++| |...+|..|+++...|+.+|.+++
T Consensus 61 ~~g~~~~g~~~v-v~aSsGN~g~alA~~a~~~G~~~~ 96 (323)
T PLN00011 61 DKGLITPGKSTL-IEATAGNTGIGLACIGAARGYKVI 96 (323)
T ss_pred HcCCCCCCCcEE-EEeCCChHHHHHHHHHHHcCCeEE
Confidence 55667888 555 456689999999999999998654
No 398
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=56.48 E-value=20 Score=24.63 Aligned_cols=26 Identities=23% Similarity=0.345 Sum_probs=22.0
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGCT 118 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~~ 118 (121)
..+|+|.| .|++|.-.++..-..|.+
T Consensus 19 ~s~VlviG-~gglGsevak~L~~~GVg 44 (198)
T cd01485 19 SAKVLIIG-AGALGAEIAKNLVLAGID 44 (198)
T ss_pred hCcEEEEC-CCHHHHHHHHHHHHcCCC
Confidence 47899999 888999999988888873
No 399
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=56.36 E-value=46 Score=22.15 Aligned_cols=40 Identities=23% Similarity=0.181 Sum_probs=25.3
Q ss_pred HHHHhhcCCCCCCEEEEecCCc---hHHHHHHHHHHHCCCEEe
Q psy3430 81 YSLIVRGKMRPGESLLVHAGAG---GLGQAAISIALHMGCTVY 120 (121)
Q Consensus 81 ~~l~~~~~~~~g~~vli~ga~g---~vG~~aiqla~~~G~~vi 120 (121)
..+.+.....+..+|+|.-+.| +-|..+.+.++..|.+|.
T Consensus 14 ~~i~~~~~~~~~~~v~il~G~GnNGgDgl~~AR~L~~~G~~V~ 56 (169)
T PF03853_consen 14 ELIRKLFGSPKGPRVLILCGPGNNGGDGLVAARHLANRGYNVT 56 (169)
T ss_dssp HHHHHHSTCCTT-EEEEEE-SSHHHHHHHHHHHHHHHTTCEEE
T ss_pred HHHHHHhcccCCCeEEEEECCCCChHHHHHHHHHHHHCCCeEE
Confidence 3443444345667776664444 667888888888898775
No 400
>PRK13810 orotate phosphoribosyltransferase; Provisional
Probab=55.96 E-value=39 Score=23.10 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=27.3
Q ss_pred cCCCCCCEEEEe---cCCchHHHHHHHHHHHCCCEEe
Q psy3430 87 GKMRPGESLLVH---AGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 87 ~~~~~g~~vli~---ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+.+|++|+|. =.+|+.=..++++++..|++|.
T Consensus 117 g~~~~g~rVlIVDDVitTGgS~~~~i~~l~~~Ga~V~ 153 (187)
T PRK13810 117 GDLKPEDRIVMLEDVTTSGGSVREAIEVVREAGAYIK 153 (187)
T ss_pred ccCCCcCEEEEEEeccCCChHHHHHHHHHHHCCCEEE
Confidence 345789999876 2478888999999999999864
No 401
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=55.93 E-value=18 Score=28.52 Aligned_cols=28 Identities=29% Similarity=0.230 Sum_probs=23.8
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.-.|+|.| +|+-|+.++..++..|.+|+
T Consensus 212 ~~dVvIIG-gGpAGl~AA~~la~~G~~v~ 239 (515)
T TIGR03140 212 PYDVLVVG-GGPAGAAAAIYAARKGLRTA 239 (515)
T ss_pred CCCEEEEC-CCHHHHHHHHHHHHCCCcEE
Confidence 35688998 89999999999999998775
No 402
>PRK14967 putative methyltransferase; Provisional
Probab=55.77 E-value=36 Score=23.51 Aligned_cols=32 Identities=28% Similarity=0.462 Sum_probs=23.4
Q ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 86 RGKMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 86 ~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
...++++++||-.| +|. |..++.+++. ++ +++
T Consensus 31 ~~~~~~~~~vLDlG-cG~-G~~~~~la~~-~~~~v~ 63 (223)
T PRK14967 31 AEGLGPGRRVLDLC-TGS-GALAVAAAAA-GAGSVT 63 (223)
T ss_pred hcccCCCCeEEEec-CCH-HHHHHHHHHc-CCCeEE
Confidence 34578899999998 555 8888888875 44 554
No 403
>PLN02463 lycopene beta cyclase
Probab=55.57 E-value=18 Score=28.17 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=20.5
Q ss_pred EEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 94 SLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 94 ~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|+|.| +|..|++++..+...|.+|.
T Consensus 30 DVvIVG-aGpAGLalA~~La~~Gl~V~ 55 (447)
T PLN02463 30 DLVVVG-GGPAGLAVAQQVSEAGLSVC 55 (447)
T ss_pred eEEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence 478888 89999888766666788764
No 404
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=54.95 E-value=58 Score=25.08 Aligned_cols=35 Identities=20% Similarity=0.465 Sum_probs=27.7
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+...+.+|++|+-. .+|..|.++.-.|+.+|.+++
T Consensus 55 ~~g~~~~g~~vv~~-ssGN~g~alA~~a~~~G~~~~ 89 (454)
T TIGR01137 55 ASGRLKPGDTIIEP-TSGNTGIGLALVAAIKGYKCI 89 (454)
T ss_pred HcCCCCCCCEEEEe-CCcHHHHHHHHHHHHcCCeEE
Confidence 44566788776655 489999999999999998754
No 405
>PRK08317 hypothetical protein; Provisional
Probab=54.85 E-value=27 Score=23.73 Aligned_cols=34 Identities=26% Similarity=0.363 Sum_probs=25.5
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCC--CEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMG--CTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G--~~vi 120 (121)
+...++++++||-.| +|. |..+..+++..+ .+++
T Consensus 13 ~~~~~~~~~~vLdiG-~G~-G~~~~~~a~~~~~~~~v~ 48 (241)
T PRK08317 13 ELLAVQPGDRVLDVG-CGP-GNDARELARRVGPEGRVV 48 (241)
T ss_pred HHcCCCCCCEEEEeC-CCC-CHHHHHHHHhcCCCcEEE
Confidence 566788999999998 444 888888888763 3543
No 406
>TIGR01136 cysKM cysteine synthases. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff.
Probab=54.72 E-value=62 Score=23.51 Aligned_cols=35 Identities=29% Similarity=0.559 Sum_probs=26.7
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+...+.+|++|+ ...+|..|+++...|+.+|.+.+
T Consensus 51 ~~g~~~~g~~vv-~aSsGN~g~alA~~a~~~G~~~~ 85 (299)
T TIGR01136 51 KRGLLKPGDTII-EATSGNTGIALAMVAAAKGYKLI 85 (299)
T ss_pred HcCCCCCCCEEE-EeCCChHHHHHHHHHHHcCCcEE
Confidence 445567788764 55589999999999999997543
No 407
>TIGR01043 ATP_syn_A_arch ATP synthase archaeal, A subunit. Archaeal ATP synthase shares extensive sequence similarity with eukaryotic and prokaryotic V-type (H+)-ATPases.
Probab=54.62 E-value=70 Score=26.08 Aligned_cols=48 Identities=15% Similarity=0.058 Sum_probs=35.1
Q ss_pred hcchHHHHHHHHHHhhcCCCCCCEEEEecCCchHHHHHH--HHHHHCCCEE
Q psy3430 71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAI--SIALHMGCTV 119 (121)
Q Consensus 71 ~l~~~~~ta~~~l~~~~~~~~g~~vli~ga~g~vG~~ai--qla~~~G~~v 119 (121)
....++.|...++.-...+-+|+++.|.| ..++|...+ |++|...+.+
T Consensus 201 ~~~~pL~TGiRvID~l~Pi~kGqr~~I~g-g~G~GKT~l~~~lak~~~adi 250 (578)
T TIGR01043 201 PPEVPLITGQRILDTFFPIAKGGTAAIPG-PFGSGKTVTQHQLAKWSDADI 250 (578)
T ss_pred CCCcchhccchhhhccccccCCCEEEEec-CCCCCHHHHHHHHHhcCCCCE
Confidence 44557789999998888999999999998 556675555 5555545544
No 408
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=54.34 E-value=33 Score=25.61 Aligned_cols=30 Identities=20% Similarity=0.215 Sum_probs=24.6
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCC
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMG 116 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G 116 (121)
+...++++++||-.| +| .|..++.+++..+
T Consensus 74 ~~L~i~~g~~VLDIG-~G-tG~~a~~LA~~~~ 103 (322)
T PRK13943 74 EWVGLDKGMRVLEIG-GG-TGYNAAVMSRVVG 103 (322)
T ss_pred HhcCCCCCCEEEEEe-CC-ccHHHHHHHHhcC
Confidence 456788999999998 54 6999999998775
No 409
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=54.13 E-value=34 Score=20.56 Aligned_cols=34 Identities=32% Similarity=0.479 Sum_probs=24.9
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCC-CEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMG-CTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G-~~vi 120 (121)
....++++++++-.| +|. |..+..+++..+ .+|+
T Consensus 13 ~~~~~~~~~~vldlG-~G~-G~~~~~l~~~~~~~~v~ 47 (124)
T TIGR02469 13 SKLRLRPGDVLWDIG-AGS-GSITIEAARLVPNGRVY 47 (124)
T ss_pred HHcCCCCCCEEEEeC-CCC-CHHHHHHHHHCCCceEE
Confidence 445677788998888 544 899999998764 4554
No 410
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=53.80 E-value=26 Score=26.78 Aligned_cols=27 Identities=11% Similarity=0.214 Sum_probs=22.8
Q ss_pred CEEEEecCCchHHHHHHHHHHHC-CCEE
Q psy3430 93 ESLLVHAGAGGLGQAAISIALHM-GCTV 119 (121)
Q Consensus 93 ~~vli~ga~g~vG~~aiqla~~~-G~~v 119 (121)
.+|.|.||+|-+|...++++... ..++
T Consensus 39 ~kVaIvGATG~vG~eLlrlL~~hP~~el 66 (381)
T PLN02968 39 KRIFVLGASGYTGAEVRRLLANHPDFEI 66 (381)
T ss_pred cEEEEECCCChHHHHHHHHHHhCCCCeE
Confidence 48999999999999999998776 4444
No 411
>PLN02503 fatty acyl-CoA reductase 2
Probab=53.61 E-value=17 Score=29.62 Aligned_cols=27 Identities=22% Similarity=0.384 Sum_probs=21.6
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHH
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALH 114 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~ 114 (121)
..-++.+|+|+||+|-+|..+++-...
T Consensus 115 ~f~~~k~VlVTGaTGFLGk~LlekLLr 141 (605)
T PLN02503 115 EFLRGKNFLITGATGFLAKVLIEKILR 141 (605)
T ss_pred hhhcCCEEEEcCCchHHHHHHHHHHHH
Confidence 344799999999999999988865443
No 412
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=53.14 E-value=22 Score=29.43 Aligned_cols=31 Identities=19% Similarity=0.312 Sum_probs=26.4
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
...|++|+|.| .|.+|.-++..++.+|++ |.
T Consensus 567 ~~~gk~VvVIG-gG~~a~d~A~~~~r~Ga~~Vt 598 (752)
T PRK12778 567 IKFGKKVAVVG-GGNTAMDSARTAKRLGAERVT 598 (752)
T ss_pred ccCCCcEEEEC-CcHHHHHHHHHHHHcCCCeEE
Confidence 45789999999 789999999999999986 64
No 413
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=53.04 E-value=30 Score=26.73 Aligned_cols=32 Identities=22% Similarity=0.350 Sum_probs=25.4
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
.+..+++|+|.| .|.+|.-++..+...|+ +|.
T Consensus 269 ~~~~g~~VvViG-gG~~g~e~A~~l~~~G~~~Vt 301 (457)
T PRK11749 269 DLPVGKRVVVIG-GGNTAMDAARTAKRLGAESVT 301 (457)
T ss_pred cCCCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence 345789999999 78888888888888887 554
No 414
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=52.32 E-value=24 Score=27.71 Aligned_cols=30 Identities=23% Similarity=0.304 Sum_probs=26.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+--++++|.| +|.+|.=..++.+.+|.+|.
T Consensus 171 ~lP~~lvIiG-gG~IGlE~a~~~~~LG~~VT 200 (454)
T COG1249 171 ELPKSLVIVG-GGYIGLEFASVFAALGSKVT 200 (454)
T ss_pred cCCCEEEEEC-CCHHHHHHHHHHHHcCCcEE
Confidence 3448899999 89999999999999999875
No 415
>KOG2250|consensus
Probab=52.21 E-value=24 Score=28.04 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=26.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
-+|.++.|.| .|.+|+.+.......|++|++
T Consensus 249 ~kgkr~~i~G-~Gnv~~~aa~~l~~~G~kvva 279 (514)
T KOG2250|consen 249 IKGKRVVIQG-FGNVGGHAAKKLSEKGAKVVA 279 (514)
T ss_pred cCceEEEEeC-CCchHHHHHHHHHhcCCEEEE
Confidence 3578888887 999999999999999998873
No 416
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=52.19 E-value=17 Score=29.59 Aligned_cols=27 Identities=15% Similarity=0.129 Sum_probs=20.2
Q ss_pred CEEEEecCCchHHHHHHHHHHHC-CCEEe
Q psy3430 93 ESLLVHAGAGGLGQAAISIALHM-GCTVY 120 (121)
Q Consensus 93 ~~vli~ga~g~vG~~aiqla~~~-G~~vi 120 (121)
-.|+|.| +|+.|+++.-.+... |.+|.
T Consensus 33 ~dVlIVG-AGPaGL~lA~~Lar~~Gi~v~ 60 (634)
T PRK08294 33 VDVLIVG-CGPAGLTLAAQLSAFPDITTR 60 (634)
T ss_pred CCEEEEC-CCHHHHHHHHHHhcCCCCcEE
Confidence 3589999 899998877666663 77553
No 417
>PF10844 DUF2577: Protein of unknown function (DUF2577); InterPro: IPR022555 This family of proteins has no known function
Probab=51.83 E-value=19 Score=22.00 Aligned_cols=21 Identities=19% Similarity=0.270 Sum_probs=16.3
Q ss_pred ccCCEEEEEccCCceeEEEEeC
Q psy3430 32 TKGRRVMGLVAARSLATTVLAD 53 (121)
Q Consensus 32 ~~Gd~V~~~~~~g~~~~~~~v~ 53 (121)
++||+|..+...|+ +.|++++
T Consensus 78 k~GD~V~ll~~~~g-Q~yiVlD 98 (100)
T PF10844_consen 78 KVGDKVLLLRVQGG-QKYIVLD 98 (100)
T ss_pred cCCCEEEEEEecCC-CEEEEEE
Confidence 89999998876554 6687765
No 418
>cd01562 Thr-dehyd Threonine dehydratase: The first step in amino acid degradation is the removal of nitrogen. Although the nitrogen atoms of most amino acids are transferred to alpha-ketoglutarate before removal, the alpha-amino group of threonine can be directly converted into NH4+. The direct deamination is catalyzed by threonine dehydratase, in which pyridoxal phosphate (PLP) is the prosthetic group. Threonine dehydratase is widely distributed in all three major phylogenetic divisions.
Probab=51.64 E-value=32 Score=24.83 Aligned_cols=28 Identities=18% Similarity=0.227 Sum_probs=21.8
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+.|+..+ +|..|.++.-.++.+|.+++
T Consensus 65 ~~~iv~~s-sGN~g~alA~~a~~~G~~~~ 92 (304)
T cd01562 65 AKGVVAAS-AGNHAQGVAYAAKLLGIPAT 92 (304)
T ss_pred CCcEEEEC-CCHHHHHHHHHHHHcCCCEE
Confidence 45555554 89999999999999998654
No 419
>PRK06732 phosphopantothenate--cysteine ligase; Validated
Probab=51.53 E-value=20 Score=25.21 Aligned_cols=22 Identities=27% Similarity=0.335 Sum_probs=16.9
Q ss_pred cCCchHHHHHHHHHHHCCCEEe
Q psy3430 99 AGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 99 ga~g~vG~~aiqla~~~G~~vi 120 (121)
.++|.+|..+++.+...|++|+
T Consensus 23 ~SSG~iG~aLA~~L~~~G~~V~ 44 (229)
T PRK06732 23 HSTGQLGKIIAETFLAAGHEVT 44 (229)
T ss_pred ccchHHHHHHHHHHHhCCCEEE
Confidence 4455689888888888888775
No 420
>PLN02256 arogenate dehydrogenase
Probab=51.22 E-value=40 Score=24.84 Aligned_cols=35 Identities=17% Similarity=0.102 Sum_probs=26.1
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+..+-..+.+|.|.| .|.+|...++..+..|.+|+
T Consensus 29 ~~~~~~~~~kI~IIG-~G~mG~slA~~L~~~G~~V~ 63 (304)
T PLN02256 29 EELEKSRKLKIGIVG-FGNFGQFLAKTFVKQGHTVL 63 (304)
T ss_pred HhhccCCCCEEEEEe-eCHHHHHHHHHHHhCCCEEE
Confidence 333344567899999 89999988888887776654
No 421
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=50.67 E-value=21 Score=28.07 Aligned_cols=23 Identities=13% Similarity=0.362 Sum_probs=20.8
Q ss_pred CEEEEecCCchHHHHHHHHHHHC
Q psy3430 93 ESLLVHAGAGGLGQAAISIALHM 115 (121)
Q Consensus 93 ~~vli~ga~g~vG~~aiqla~~~ 115 (121)
.+|.|.|++|.+|..++++.+..
T Consensus 58 KkI~ILGSTGSIGtqtLdVI~~~ 80 (454)
T PLN02696 58 KPISLLGSTGSIGTQTLDIVAEN 80 (454)
T ss_pred cEEEEecCCcHhhHHHHHHHHhC
Confidence 58999999999999999998865
No 422
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=50.65 E-value=20 Score=31.38 Aligned_cols=26 Identities=27% Similarity=0.245 Sum_probs=22.2
Q ss_pred EEEecCCchHHHHHHHHHHHCCCEEeC
Q psy3430 95 LLVHAGAGGLGQAAISIALHMGCTVYT 121 (121)
Q Consensus 95 vli~ga~g~vG~~aiqla~~~G~~vi~ 121 (121)
|+|.| +|.-|++|.--|...|++|++
T Consensus 412 VvVVG-~G~AGl~AAi~Aae~Ga~Viv 437 (1167)
T PTZ00306 412 VIVVG-GGLAGCSAAIEAASCGAQVIL 437 (1167)
T ss_pred EEEEC-CCHHHHHHHHHHHHCCCcEEE
Confidence 88998 899999888888888998874
No 423
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=50.05 E-value=21 Score=25.47 Aligned_cols=25 Identities=24% Similarity=0.227 Sum_probs=17.4
Q ss_pred EEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 95 LLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 95 vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
|.|.| +|+.|+.+...+...|.||.
T Consensus 20 V~IVG-aGpaGl~aA~~La~~g~kV~ 44 (230)
T PF01946_consen 20 VAIVG-AGPAGLTAAYYLAKAGLKVA 44 (230)
T ss_dssp EEEE---SHHHHHHHHHHHHHTS-EE
T ss_pred EEEEC-CChhHHHHHHHHHHCCCeEE
Confidence 66777 89999988877766688775
No 424
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=49.82 E-value=27 Score=23.95 Aligned_cols=27 Identities=19% Similarity=0.228 Sum_probs=22.7
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCT 118 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~ 118 (121)
...+|+|.| +|++|.-.++..-..|..
T Consensus 20 ~~s~VlIiG-~gglG~evak~La~~GVg 46 (197)
T cd01492 20 RSARILLIG-LKGLGAEIAKNLVLSGIG 46 (197)
T ss_pred HhCcEEEEc-CCHHHHHHHHHHHHcCCC
Confidence 346799998 888999999999888873
No 425
>cd06919 Asp_decarbox Aspartate alpha-decarboxylase or L-aspartate 1-decarboxylase, a pyruvoyl group-dependent decarboxylase in beta-alanine production. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme L-aspartate decarboxylase (ADC), EC:4.1.1.11 which requires a pyruvoyl group for its activity. The pyruvoyl cofactor is covalently bound to the enzyme. The protein is synthesized as a proenzyme and cleaved via self-processing at Gly23-Ser24 to yield an alpha chain (C-terminal fragment) and beta chain (N-terminal fragment), and the pyruvoyl group. Beta-alanine is required for the biosynthesis of pantothenate, in which the enzyme plays a critical regulatory role. The active site of the tetrameric enzyme is located at the interface of two subunits, with a Lysine and a Histidine from the beta chain of one subunit forming the active site with residues from the alpha chain of the adjacent subunit. This alignment
Probab=49.78 E-value=12 Score=23.57 Aligned_cols=23 Identities=26% Similarity=0.215 Sum_probs=19.0
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV 41 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~ 41 (121)
.-.++|-.++|+| ++||+|+-++
T Consensus 56 TYvI~g~~gSg~I~lNGAAAr~~~~GD~vII~s 88 (111)
T cd06919 56 TYVIPGERGSGVICLNGAAARLGQPGDRVIIMA 88 (111)
T ss_pred EEEEEcCCCCCEEEeCCHHHhcCCCCCEEEEEE
Confidence 4568899999998 8999998765
No 426
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=49.76 E-value=33 Score=22.77 Aligned_cols=29 Identities=17% Similarity=0.178 Sum_probs=16.0
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTV 119 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~v 119 (121)
-++++|+|.| +|..+.-++..+...|.+|
T Consensus 165 ~~~k~V~VVG-~G~SA~d~a~~l~~~g~~V 193 (203)
T PF13738_consen 165 FKGKRVVVVG-GGNSAVDIAYALAKAGKSV 193 (203)
T ss_dssp CTTSEEEEE---SHHHHHHHHHHTTTCSEE
T ss_pred cCCCcEEEEc-ChHHHHHHHHHHHhhCCEE
Confidence 3679999999 5555544444433345554
No 427
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=49.39 E-value=85 Score=21.63 Aligned_cols=36 Identities=22% Similarity=0.224 Sum_probs=27.0
Q ss_pred hcCCCCCCEEEEecCCchH--HHHHHHHHHHCCCEEeC
Q psy3430 86 RGKMRPGESLLVHAGAGGL--GQAAISIALHMGCTVYT 121 (121)
Q Consensus 86 ~~~~~~g~~vli~ga~g~v--G~~aiqla~~~G~~vi~ 121 (121)
....++||-+++...+|.. =.-+++.||..|+++|+
T Consensus 104 ~~~~~~gDvli~iS~SG~s~~v~~a~~~Ak~~G~~vI~ 141 (196)
T PRK10886 104 RALGHAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVA 141 (196)
T ss_pred HHcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 4667899998777655543 36678999999998874
No 428
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=48.80 E-value=40 Score=26.24 Aligned_cols=30 Identities=23% Similarity=0.464 Sum_probs=24.2
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCC-EE
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGC-TV 119 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~-~v 119 (121)
...+++|+|.| .|.+|.-++..+...|+ +|
T Consensus 278 ~~~gk~VvVIG-gG~~g~e~A~~~~~~ga~~V 308 (471)
T PRK12810 278 SAKGKHVVVIG-GGDTGMDCVGTAIRQGAKSV 308 (471)
T ss_pred cCCCCEEEEEC-CcHHHHHHHHHHHHcCCCeE
Confidence 34689999999 78899888887778887 44
No 429
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=48.65 E-value=44 Score=24.22 Aligned_cols=36 Identities=17% Similarity=0.206 Sum_probs=22.9
Q ss_pred HHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCC
Q psy3430 80 YYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMG 116 (121)
Q Consensus 80 ~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G 116 (121)
..+++...+--...+|++.| +|..|....++....+
T Consensus 13 lnAlk~~g~~l~d~riv~~G-AGsAg~gia~ll~~~~ 48 (254)
T cd00762 13 LAALKVTKKKISEHKVLFNG-AGAAALGIANLIVXLX 48 (254)
T ss_pred HHHHHHhCCChhhcEEEEEC-cCHHHHHHHHHHHHHH
Confidence 34453333334578999999 7877877776665543
No 430
>cd01561 CBS_like CBS_like: This subgroup includes Cystathionine beta-synthase (CBS) and Cysteine synthase. CBS is a unique heme-containing enzyme that catalyzes a pyridoxal 5'-phosphate (PLP)-dependent condensation of serine and homocysteine to give cystathionine. Deficiency of CBS leads to homocystinuria, an inherited disease of sulfur metabolism characterized by increased levels of the toxic metabolite homocysteine. Cysteine synthase on the other hand catalyzes the last step of cysteine biosynthesis. This subgroup also includes an O-Phosphoserine sulfhydrylase found in hyperthermophilic archaea which produces L-cysteine from sulfide and the more thermostable O-phospho-L-serine.
Probab=48.29 E-value=96 Score=22.35 Aligned_cols=34 Identities=24% Similarity=0.483 Sum_probs=25.1
Q ss_pred hcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 86 RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 86 ~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
....++++.|+. ..+|..|+++.-.|+.+|.+.+
T Consensus 47 ~g~~~~~~~vv~-~SsGN~g~alA~~a~~~G~~~~ 80 (291)
T cd01561 47 RGLLKPGTTIIE-PTSGNTGIGLAMVAAAKGYRFI 80 (291)
T ss_pred cCCCCCCCEEEE-eCCChHHHHHHHHHHHcCCeEE
Confidence 334445666554 5589999999999999998654
No 431
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=48.06 E-value=35 Score=26.12 Aligned_cols=29 Identities=21% Similarity=0.259 Sum_probs=24.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+++|+|.| +|.+|.-+++..+.+|.+|.
T Consensus 156 ~~~~vvIIG-gG~~g~e~A~~l~~~g~~Vt 184 (438)
T PRK07251 156 LPERLGIIG-GGNIGLEFAGLYNKLGSKVT 184 (438)
T ss_pred cCCeEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 457899999 79999888888888888764
No 432
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=48.01 E-value=33 Score=25.44 Aligned_cols=29 Identities=31% Similarity=0.404 Sum_probs=22.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCE-Ee
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCT-VY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~-vi 120 (121)
.+++++|.| +|.+|.-++..+...|++ |.
T Consensus 171 ~g~~vvViG-~G~~g~e~A~~l~~~g~~~Vt 200 (352)
T PRK12770 171 EGKKVVVVG-AGLTAVDAALEAVLLGAEKVY 200 (352)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence 378999999 788898887776677875 54
No 433
>PLN02409 serine--glyoxylate aminotransaminase
Probab=47.87 E-value=59 Score=24.63 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=24.6
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-+++||+|++.- .+..+....++++..|+++.
T Consensus 80 ~~~~Gd~Vlv~~-~~~~~~~~~~~~~~~g~~v~ 111 (401)
T PLN02409 80 TLSPGDKVVSFR-IGQFSLLWIDQMQRLNFDVD 111 (401)
T ss_pred cCCCCCEEEEeC-CCchhHHHHHHHHHcCCceE
Confidence 367999999886 66677666788888888654
No 434
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=47.53 E-value=53 Score=23.39 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=26.4
Q ss_pred CCCCCEEEEec---CCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHA---GAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~g---a~g~vG~~aiqla~~~G~~vi 120 (121)
+.+|++|||.- .+|+.=..++++++..|++|+
T Consensus 173 l~~G~rVLIVDDvi~TG~Tl~~~~~ll~~~ga~vv 207 (238)
T PRK08558 173 LKKGDRVLIVDDIIRSGETQRALLDLARQAGADVV 207 (238)
T ss_pred cCCcCEEEEEecccccCHHHHHHHHHHHHcCCEEE
Confidence 57899998863 378888999999999999864
No 435
>PF04127 DFP: DNA / pantothenate metabolism flavoprotein; InterPro: IPR007085 This entry represents the C-terminal domain found in DNA/pantothenate metabolism flavoproteins, which affects synthesis of DNA and pantothenate metabolism. These proteins contain ATP, phosphopantothenate, and cysteine binding sites. The structure of this domain has been determined in human phosphopantothenoylcysteine (PPC) synthetase [] and as the PPC synthase domain (CoaB) from the Escherichia coli coenzyme A bifunctional protein CoaBC []. This domain adopts a 3-layer alpha/beta/alpha fold with mixed beta-sheets, which topologically resembles a combination of Rossmann-like and ribokinase-like folds. The structure of these proteins predicts a ping pong mechanism with initial formation of an acyladenylate intermediate, followed by release of pyrophosphate and attack by cysteine to form the final products PPC and AMP. ; PDB: 1U7W_A 1U7U_A 1U80_C 1U7Z_A 1P9O_B 2GK4_A.
Probab=46.91 E-value=45 Score=22.77 Aligned_cols=27 Identities=22% Similarity=0.346 Sum_probs=17.5
Q ss_pred EEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 94 SLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 94 ~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.+=+..+|-+|.+.++-+..+|++|+
T Consensus 21 R~ItN~SSG~~G~~lA~~~~~~Ga~V~ 47 (185)
T PF04127_consen 21 RFITNRSSGKMGAALAEEAARRGAEVT 47 (185)
T ss_dssp EEEEES--SHHHHHHHHHHHHTT-EEE
T ss_pred eEecCCCcCHHHHHHHHHHHHCCCEEE
Confidence 344455577788888888888888775
No 436
>PRK09213 pur operon repressor; Provisional
Probab=46.90 E-value=52 Score=24.04 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=27.5
Q ss_pred CCCCCCEEEEec---CCchHHHHHHHHHHHCCCEEe
Q psy3430 88 KMRPGESLLVHA---GAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 88 ~~~~g~~vli~g---a~g~vG~~aiqla~~~G~~vi 120 (121)
.+++|++|||.- .+|+.=..++++++..|++|.
T Consensus 192 ~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~Vv 227 (271)
T PRK09213 192 SLKEGSRVLIVDDFMKAGGTINGMISLLKEFDAEVV 227 (271)
T ss_pred hcCCcCEEEEEeeecccCHhHHHHHHHHHHCCCEEE
Confidence 467899998873 478888999999999999875
No 437
>KOG2017|consensus
Probab=46.88 E-value=14 Score=28.23 Aligned_cols=26 Identities=38% Similarity=0.486 Sum_probs=23.1
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
+..+|||.| +||+|.=++|+..+.|+
T Consensus 65 k~s~VLVVG-aGGLGcPa~~YLaaaGv 90 (427)
T KOG2017|consen 65 KNSSVLVVG-AGGLGCPAAQYLAAAGV 90 (427)
T ss_pred CCccEEEEc-cCCCCCHHHHHHHHcCC
Confidence 457899999 89999999999999887
No 438
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=46.86 E-value=35 Score=25.22 Aligned_cols=28 Identities=29% Similarity=0.327 Sum_probs=24.4
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-..++|.| +|.+|+.+...++..|.+|.
T Consensus 136 ~~~v~vvG-~G~~gle~A~~~~~~G~~v~ 163 (415)
T COG0446 136 PKDVVVVG-AGPIGLEAAEAAAKRGKKVT 163 (415)
T ss_pred cCeEEEEC-CcHHHHHHHHHHHHcCCeEE
Confidence 46788887 89999999999999998765
No 439
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=46.45 E-value=54 Score=22.60 Aligned_cols=36 Identities=17% Similarity=0.142 Sum_probs=24.7
Q ss_pred HhhcCCCCCCEEEEecCCchHHHHHHHHH--HHCCCEEe
Q psy3430 84 IVRGKMRPGESLLVHAGAGGLGQAAISIA--LHMGCTVY 120 (121)
Q Consensus 84 ~~~~~~~~g~~vli~ga~g~vG~~aiqla--~~~G~~vi 120 (121)
.+..+.....+++|.| +|.+|...++.. ...|.+++
T Consensus 76 ~~~l~~~~~~rV~IIG-aG~iG~~l~~~~~~~~~g~~iv 113 (213)
T PRK05472 76 EKILGLDRTWNVALVG-AGNLGRALLNYNGFEKRGFKIV 113 (213)
T ss_pred HHHhCCCCCcEEEEEC-CCHHHHHHHHhhhcccCCcEEE
Confidence 3445556677899999 899998877753 23455554
No 440
>TIGR00223 panD L-aspartate-alpha-decarboxylase. Members of this family are aspartate 1-decarboxylase, the enzyme that makes beta-alanine and C02 from aspartate. Beta-alanine is then used to make the vitamin pantothenate, from which coenzyme A is made. Aspartate 1-decarboxylase is synthesized as a proenzyme, then cleaved to an alpha (C-terminal) and beta (N-terminal) subunit with a pyruvoyl group.
Probab=46.40 E-value=14 Score=23.75 Aligned_cols=25 Identities=16% Similarity=-0.059 Sum_probs=19.9
Q ss_pred CCCCccCcceEEEE----------ccCCEEEEEcc
Q psy3430 18 GQDCVLGLEFSGRD----------TKGRRVMGLVA 42 (121)
Q Consensus 18 ~~~~~~G~e~~G~V----------~~Gd~V~~~~~ 42 (121)
..-.++|-.++|+| ++||+|+-++.
T Consensus 56 ~TYvI~G~~GSg~I~lNGAAArl~~~GD~VII~sy 90 (126)
T TIGR00223 56 STYAIAGKRGSRIICVNGAAARCVSVGDIVIIASY 90 (126)
T ss_pred EEEEEEcCCCCCEEEeCCHHHhcCCCCCEEEEEEC
Confidence 34568899999998 89999987653
No 441
>PRK13748 putative mercuric reductase; Provisional
Probab=46.12 E-value=30 Score=27.34 Aligned_cols=26 Identities=31% Similarity=0.341 Sum_probs=21.9
Q ss_pred EEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 94 SLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 94 ~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-|+|.| +|+-|..+...+...|.+|.
T Consensus 100 DvvVIG-~GpaG~~aA~~~~~~G~~v~ 125 (561)
T PRK13748 100 HVAVIG-SGGAAMAAALKAVEQGARVT 125 (561)
T ss_pred CEEEEC-cCHHHHHHHHHHHhCCCeEE
Confidence 378888 79999999988888998874
No 442
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=46.10 E-value=75 Score=23.36 Aligned_cols=35 Identities=20% Similarity=0.300 Sum_probs=21.9
Q ss_pred HHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHC
Q psy3430 80 YYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHM 115 (121)
Q Consensus 80 ~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~ 115 (121)
..+++...+--...+|++.| +|..|....++....
T Consensus 13 lnAlk~~g~~l~d~~iv~~G-AGsAg~gia~ll~~~ 47 (279)
T cd05312 13 LAALRITGKPLSDQRILFLG-AGSAGIGIADLIVSA 47 (279)
T ss_pred HHHHHHhCCChhhcEEEEEC-cCHHHHHHHHHHHHH
Confidence 34553333333567889998 787777777666544
No 443
>PRK08198 threonine dehydratase; Provisional
Probab=46.04 E-value=53 Score=25.03 Aligned_cols=29 Identities=17% Similarity=0.200 Sum_probs=21.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.++.|+..+ +|..|+++...|+.+|.+.+
T Consensus 69 ~~~~vv~aS-sGN~g~alA~~a~~~G~~~~ 97 (404)
T PRK08198 69 RARGVVAAS-AGNHAQGVAYAASLLGIKAT 97 (404)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHHcCCCEE
Confidence 355665554 89999999999999998543
No 444
>PTZ00058 glutathione reductase; Provisional
Probab=45.64 E-value=42 Score=27.04 Aligned_cols=29 Identities=14% Similarity=0.332 Sum_probs=24.9
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+++++|.| +|.+|.-.++..+.+|.+|.
T Consensus 236 ~pk~VvIIG-gG~iGlE~A~~l~~~G~~Vt 264 (561)
T PTZ00058 236 EAKRIGIAG-SGYIAVELINVVNRLGAESY 264 (561)
T ss_pred CCCEEEEEC-CcHHHHHHHHHHHHcCCcEE
Confidence 378999998 78999988888888998765
No 445
>PF00291 PALP: Pyridoxal-phosphate dependent enzyme; InterPro: IPR001926 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. Pyridoxal-5'-phosphate-dependent enzymes (B6 enzymes) catalyze manifold reactions in the metabolism of amino acids. Most of these enzymes can be assigned to one of three different families of homologous proteins, the alpha, beta and gamma families. The alpha and gamma family might be distantly related with one another, but are clearly not homologous with the beta family. The beta family includes L- and D-serine dehydratase, threonine dehydratase, the beta subunit of tryptophan synthase, threonine synthase and cysteine synthase. These enzymes catalyze beta-replacement or beta-elimination reactions []. Comparison of sequences from eukaryotic, archebacterial, and eubacterial species indicates that the functional specialization of most B6 enzymes has occurred already in the universal ancestor cell. The cofactor pyridoxal-5-phosphate must have emerged very early in biological evolution; conceivably, organic cofactors and metal ions were the first biological catalysts []. The 3D structure of the beta-subunit of tryptophan synthase has been solved. The subunit has two domains that are approximately the same size and similar to each other in folding pattern. Each has a core containing a four-stranded parallel beta-sheet with three helices on its inner side and one on the outer side. The cofactor is bound at the interface between the domains [].; GO: 0003824 catalytic activity, 0030170 pyridoxal phosphate binding, 0008152 metabolic process; PDB: 1P5J_A 2D1F_B 3AEY_B 3AEX_B 3IAU_A 2Q3B_A 2Q3D_A 2Q3C_A 1TZJ_A 1RQX_D ....
Probab=45.49 E-value=33 Score=24.59 Aligned_cols=29 Identities=28% Similarity=0.385 Sum_probs=23.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+.| +.+.+|..|.+++..|+.+|.+++
T Consensus 55 ~~~~v-v~assGN~g~a~A~~a~~~g~~~~ 83 (306)
T PF00291_consen 55 GGRTV-VGASSGNHGRALAYAAARLGLKCT 83 (306)
T ss_dssp TTSEE-EEESSSHHHHHHHHHHHHHTCEEE
T ss_pred cccee-eeeccCCceehhhhhhhhccccce
Confidence 34556 666699999999999999998765
No 446
>COG0794 GutQ Predicted sugar phosphate isomerase involved in capsule formation [Cell envelope biogenesis, outer membrane]
Probab=45.40 E-value=50 Score=23.08 Aligned_cols=37 Identities=19% Similarity=0.362 Sum_probs=27.0
Q ss_pred hhcCCCCCCEEEEecCCchHH--HHHHHHHHHCCCEEeC
Q psy3430 85 VRGKMRPGESLLVHAGAGGLG--QAAISIALHMGCTVYT 121 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG--~~aiqla~~~G~~vi~ 121 (121)
+..-++++|-++....+|-.. ..++..+|..|+++++
T Consensus 80 dlg~i~~~DvviaiS~SGeT~el~~~~~~aK~~g~~lia 118 (202)
T COG0794 80 DLGMITPGDVVIAISGSGETKELLNLAPKAKRLGAKLIA 118 (202)
T ss_pred CccCCCCCCEEEEEeCCCcHHHHHHHHHHHHHcCCcEEE
Confidence 345678999886665577665 5677888899988763
No 447
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=45.32 E-value=30 Score=29.46 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=18.7
Q ss_pred EEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 95 LLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 95 vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
|+|.| +|.-|+.+.--|...|++|+
T Consensus 16 VlVVG-~G~AGl~AAl~Aa~~G~~V~ 40 (897)
T PRK13800 16 VLVIG-GGTAGTMAALTAAEHGANVL 40 (897)
T ss_pred EEEEC-cCHHHHHHHHHHHHCCCeEE
Confidence 77787 78888877766666787765
No 448
>PTZ00367 squalene epoxidase; Provisional
Probab=45.22 E-value=56 Score=26.41 Aligned_cols=27 Identities=11% Similarity=0.091 Sum_probs=22.3
Q ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 93 ESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 93 ~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-.|+|.| +|..|.+++..+...|.+|.
T Consensus 34 ~dViIVG-aGiaGlalA~aLar~G~~V~ 60 (567)
T PTZ00367 34 YDVIIVG-GSIAGPVLAKALSKQGRKVL 60 (567)
T ss_pred ccEEEEC-CCHHHHHHHHHHHhcCCEEE
Confidence 3588998 89999999888888888765
No 449
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=45.16 E-value=44 Score=25.96 Aligned_cols=30 Identities=27% Similarity=0.277 Sum_probs=24.8
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.+++++|.| +|.+|.-..+....+|.+|.
T Consensus 172 ~~~~~vvIIG-gG~ig~E~A~~l~~~G~~Vt 201 (466)
T PRK06115 172 EVPKHLVVIG-AGVIGLELGSVWRRLGAQVT 201 (466)
T ss_pred cCCCeEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 3468999999 78999888888888888764
No 450
>PRK05449 aspartate alpha-decarboxylase; Provisional
Probab=45.00 E-value=16 Score=23.60 Aligned_cols=23 Identities=22% Similarity=0.057 Sum_probs=19.0
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLV 41 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~ 41 (121)
.-.++|-.++|+| ++||+|+-++
T Consensus 57 TYvI~g~~GSg~I~lNGAAAr~~~~GD~vII~a 89 (126)
T PRK05449 57 TYVIAGERGSGVICLNGAAARLVQVGDLVIIAA 89 (126)
T ss_pred EEEEEcCCCCCEEEeCCHHHhcCCCCCEEEEEE
Confidence 4568899999998 8999998765
No 451
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=44.77 E-value=62 Score=23.47 Aligned_cols=37 Identities=19% Similarity=0.263 Sum_probs=22.8
Q ss_pred HHHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHC
Q psy3430 78 TAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHM 115 (121)
Q Consensus 78 ta~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~ 115 (121)
.-+.+++...+--...+|++.| +|..|....++....
T Consensus 11 gll~Al~~~g~~l~d~riv~~G-AGsAg~gia~ll~~~ 47 (255)
T PF03949_consen 11 GLLNALRVTGKKLSDQRIVFFG-AGSAGIGIARLLVAA 47 (255)
T ss_dssp HHHHHHHHHTS-GGG-EEEEEB--SHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHcEEEEeC-CChhHHHHHHHHHHH
Confidence 3445554445555778999999 787787777666554
No 452
>PLN02697 lycopene epsilon cyclase
Probab=44.59 E-value=31 Score=27.59 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=20.6
Q ss_pred EEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 94 SLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 94 ~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-|+|.| +|..|+++...+...|.+|.
T Consensus 110 DVvIVG-aGPAGLalA~~Lak~Gl~V~ 135 (529)
T PLN02697 110 DLVVIG-CGPAGLALAAESAKLGLNVG 135 (529)
T ss_pred cEEEEC-cCHHHHHHHHHHHhCCCcEE
Confidence 478888 89999888877766788764
No 453
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=44.50 E-value=40 Score=29.18 Aligned_cols=29 Identities=24% Similarity=0.457 Sum_probs=25.4
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCT 118 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~ 118 (121)
+..|++|+|.| +|.+|.-++..++.+|++
T Consensus 568 ~~~Gk~VvVIG-gG~tA~D~A~~a~rlGa~ 596 (1006)
T PRK12775 568 ISLGKSVVVIG-AGNTAMDCLRVAKRLGAP 596 (1006)
T ss_pred ccCCCEEEEEC-CcHHHHHHHHHHHHcCCC
Confidence 45789999999 799999999999999984
No 454
>PRK07048 serine/threonine dehydratase; Validated
Probab=44.43 E-value=50 Score=24.27 Aligned_cols=27 Identities=22% Similarity=0.182 Sum_probs=20.5
Q ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 93 ESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 93 ~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.| |...+|..|.++...++.+|.+++
T Consensus 73 ~~v-v~aSsGN~g~alA~~a~~~G~~~~ 99 (321)
T PRK07048 73 AGV-VTFSSGNHAQAIALSARLLGIPAT 99 (321)
T ss_pred CcE-EEeCCCHHHHHHHHHHHHcCCCEE
Confidence 344 444489999999999999998654
No 455
>PLN02507 glutathione reductase
Probab=44.27 E-value=34 Score=26.94 Aligned_cols=25 Identities=32% Similarity=0.387 Sum_probs=22.1
Q ss_pred EEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 95 LLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 95 vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++|.| +|+-|..+...|..+|.+|.
T Consensus 28 vvVIG-~GpaG~~aA~~a~~~G~~V~ 52 (499)
T PLN02507 28 LFVIG-AGSGGVRAARFSANFGAKVG 52 (499)
T ss_pred EEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence 78888 79999999999999998874
No 456
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=44.18 E-value=42 Score=26.40 Aligned_cols=30 Identities=33% Similarity=0.338 Sum_probs=25.4
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+++|.|.| +|+-|+.+.+-+...|..|+
T Consensus 121 ~tg~~VaviG-aGPAGl~~a~~L~~~G~~Vt 150 (457)
T COG0493 121 RTGKKVAVIG-AGPAGLAAADDLSRAGHDVT 150 (457)
T ss_pred CCCCEEEEEC-CCchHhhhHHHHHhCCCeEE
Confidence 4579999999 89999998888888887765
No 457
>COG3007 Uncharacterized paraquat-inducible protein B [Function unknown]
Probab=44.16 E-value=15 Score=27.51 Aligned_cols=30 Identities=33% Similarity=0.607 Sum_probs=21.4
Q ss_pred hcCCCCC-CEEEEecCCchHHHHHHHHHHHCC
Q psy3430 86 RGKMRPG-ESLLVHAGAGGLGQAAISIALHMG 116 (121)
Q Consensus 86 ~~~~~~g-~~vli~ga~g~vG~~aiqla~~~G 116 (121)
...++.| ++|||.||+++.|+++ +++.++|
T Consensus 34 ~gp~~ngPKkVLviGaSsGyGLa~-RIsaaFG 64 (398)
T COG3007 34 AGPIKNGPKKVLVIGASSGYGLAA-RISAAFG 64 (398)
T ss_pred cCCccCCCceEEEEecCCcccHHH-HHHHHhC
Confidence 3455544 7899999999999865 4555554
No 458
>cd06447 D-Ser-dehyd D-Serine dehydratase is a pyridoxal phosphate (PLP)-dependent enzyme which catalyzes the conversion of L- or D-serine to pyruvate and ammonia. D-serine dehydratase serves as a detoxifying enzyme in most E. coli strains where D-serine is a competitive antagonist of beta-alanine in the biosynthetic pathway to pentothenate and coenzyme A. D-serine dehydratase is different from other pyridoxal-5'-phosphate-dependent enzymes in that it catalyzes alpha, beta-elimination reactions on amino acids.
Probab=44.08 E-value=1.1e+02 Score=23.77 Aligned_cols=26 Identities=23% Similarity=0.302 Sum_probs=21.8
Q ss_pred EEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 95 LLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 95 vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
-+|...+|..|+.+...|+.+|.+++
T Consensus 136 ~VV~aSsGN~G~alA~~a~~~G~~~~ 161 (404)
T cd06447 136 SIAVGSTGNLGLSIGIMAAALGFKVT 161 (404)
T ss_pred EEEEECccHHHHHHHHHHHHcCCCEE
Confidence 46676689999999999999998654
No 459
>PRK07846 mycothione reductase; Reviewed
Probab=43.90 E-value=43 Score=25.93 Aligned_cols=28 Identities=21% Similarity=0.262 Sum_probs=24.0
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.++++|.| +|.+|.-.++.++.+|.+|.
T Consensus 166 ~~~vvIIG-gG~iG~E~A~~l~~~G~~Vt 193 (451)
T PRK07846 166 PESLVIVG-GGFIAAEFAHVFSALGVRVT 193 (451)
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 47899999 78999998888888898765
No 460
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=43.88 E-value=64 Score=20.64 Aligned_cols=40 Identities=33% Similarity=0.508 Sum_probs=23.1
Q ss_pred HHHHHHhhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 79 AYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 79 a~~~l~~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
....|.....+++| ++++|- +|..+....+-++..|+.+.
T Consensus 84 va~~La~~~~~~~g-~iVvHt-SGa~~~~vL~p~~~~Ga~~~ 123 (127)
T PF10727_consen 84 VAEQLAQYGAWRPG-QIVVHT-SGALGSDVLAPARERGAIVA 123 (127)
T ss_dssp HHHHHHCC--S-TT--EEEES--SS--GGGGHHHHHTT-EEE
T ss_pred HHHHHHHhccCCCC-cEEEEC-CCCChHHhhhhHHHCCCeEE
Confidence 33445444445666 577786 89999999999999998653
No 461
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=43.73 E-value=64 Score=23.55 Aligned_cols=33 Identities=21% Similarity=0.349 Sum_probs=27.4
Q ss_pred CCCCCCEEEEec---CCchHHHHHHHHHHHCCCEEe
Q psy3430 88 KMRPGESLLVHA---GAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 88 ~~~~g~~vli~g---a~g~vG~~aiqla~~~G~~vi 120 (121)
.+++|++|+|.- .+|+.=..++++++..|++|+
T Consensus 190 ~l~~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~Vv 225 (268)
T TIGR01743 190 SLKTGSKVLIIDDFMKAGGTINGMINLLDEFDAEVA 225 (268)
T ss_pred hCCCcCEEEEEeeecccCHHHHHHHHHHHHCCCEEE
Confidence 467899998873 378888999999999999875
No 462
>COG0853 PanD Aspartate 1-decarboxylase [Coenzyme metabolism]
Probab=43.53 E-value=18 Score=23.25 Aligned_cols=24 Identities=21% Similarity=0.065 Sum_probs=19.2
Q ss_pred CCCccCcceEEEE----------ccCCEEEEEcc
Q psy3430 19 QDCVLGLEFSGRD----------TKGRRVMGLVA 42 (121)
Q Consensus 19 ~~~~~G~e~~G~V----------~~Gd~V~~~~~ 42 (121)
.-.++|-.++|++ ++||+|+-++.
T Consensus 56 TYvI~g~rGSg~I~lNGAAArl~~~GD~VII~sy 89 (126)
T COG0853 56 TYVIAGERGSGVICLNGAAARLVQVGDLVIIMSY 89 (126)
T ss_pred EEEEEccCCCcEEEechHHHhhCCCCCEEEEEEc
Confidence 3457888889988 89999987753
No 463
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=43.53 E-value=83 Score=25.77 Aligned_cols=32 Identities=28% Similarity=0.511 Sum_probs=25.8
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCC-EEe
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGC-TVY 120 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~-~vi 120 (121)
....|++|+|.| +|.+|.-++..++.+|+ +|.
T Consensus 319 ~~~~gk~VvVIG-gG~~a~e~A~~l~~~Ga~~Vt 351 (652)
T PRK12814 319 ALHPGKKVVVIG-GGNTAIDAARTALRLGAESVT 351 (652)
T ss_pred cccCCCeEEEEC-CCHHHHHHHHHHHHcCCCeEE
Confidence 467899999999 78899888888888887 343
No 464
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=43.49 E-value=31 Score=27.71 Aligned_cols=24 Identities=42% Similarity=0.510 Sum_probs=18.5
Q ss_pred EEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 95 LLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 95 vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
|+|.| +| .|+.+.--|...|++|+
T Consensus 19 vvvvG-~G-~G~~aA~~a~~~G~~v~ 42 (564)
T PRK12845 19 LLVVG-SG-TGMAAALAAHELGLSVL 42 (564)
T ss_pred EEEEC-Cc-HHHHHHHHHHHCCCcEE
Confidence 67777 56 58888777777898876
No 465
>PRK06110 hypothetical protein; Provisional
Probab=43.40 E-value=62 Score=23.86 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=20.8
Q ss_pred EEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 95 LLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 95 vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+|...+|..|+++.-.|+.+|.+++
T Consensus 72 ~vv~aSsGN~g~alA~~a~~~G~~~~ 97 (322)
T PRK06110 72 GVISATRGNHGQSVAFAARRHGLAAT 97 (322)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCCEE
Confidence 36666688899999999999997543
No 466
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=43.25 E-value=48 Score=25.34 Aligned_cols=30 Identities=17% Similarity=0.352 Sum_probs=25.2
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
....+++|.| .|.+|..+++.+...|.+|+
T Consensus 229 ~~~~~iiIiG-~G~~g~~l~~~L~~~~~~v~ 258 (453)
T PRK09496 229 KPVKRVMIVG-GGNIGYYLAKLLEKEGYSVK 258 (453)
T ss_pred CCCCEEEEEC-CCHHHHHHHHHHHhCCCeEE
Confidence 3468899999 79999999999888887764
No 467
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=43.20 E-value=43 Score=25.01 Aligned_cols=31 Identities=23% Similarity=0.265 Sum_probs=24.2
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
++.+++++|.| +|.+|.-++..+...|.+|.
T Consensus 138 ~~~~~~vvViG-gG~~g~e~A~~L~~~g~~Vt 168 (377)
T PRK04965 138 LRDAQRVLVVG-GGLIGTELAMDLCRAGKAVT 168 (377)
T ss_pred hhcCCeEEEEC-CCHHHHHHHHHHHhcCCeEE
Confidence 45678999999 78888877777777787664
No 468
>PLN02985 squalene monooxygenase
Probab=43.15 E-value=37 Score=26.93 Aligned_cols=26 Identities=23% Similarity=0.170 Sum_probs=20.7
Q ss_pred EEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 94 SLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 94 ~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.|+|.| +|..|+++...+...|.+|.
T Consensus 45 DViIVG-AG~aGlalA~aLa~~G~~V~ 70 (514)
T PLN02985 45 DVIIVG-AGVGGSALAYALAKDGRRVH 70 (514)
T ss_pred eEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 588998 79999888776666788765
No 469
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=43.12 E-value=58 Score=20.00 Aligned_cols=35 Identities=14% Similarity=0.301 Sum_probs=24.6
Q ss_pred cCCCCCCEEEEecCCchH--HHHHHHHHHHCCCEEeC
Q psy3430 87 GKMRPGESLLVHAGAGGL--GQAAISIALHMGCTVYT 121 (121)
Q Consensus 87 ~~~~~g~~vli~ga~g~v--G~~aiqla~~~G~~vi~ 121 (121)
..+.++|.+++..-+|.. =.-+++.||..|++|++
T Consensus 43 ~~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 43 GMVTPGDVVIAISNSGETDELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred CcCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEE
Confidence 456788888777655543 36677888888988763
No 470
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=43.08 E-value=44 Score=25.90 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=23.9
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.++++|.| +|.+|.-+++.++.+|.+|+
T Consensus 180 ~~~vvIIG-gG~~G~E~A~~l~~~g~~Vt 207 (472)
T PRK05976 180 PKSLVIVG-GGVIGLEWASMLADFGVEVT 207 (472)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 47999999 79999988888888888764
No 471
>PLN02356 phosphateglycerate kinase
Probab=42.89 E-value=1e+02 Score=24.06 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=25.4
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+...++++..|. ...+|..|+++.-+|+.+|.+++
T Consensus 97 ~~g~~~~~g~Vv-eaSSGN~g~alA~~aa~~G~~~~ 131 (423)
T PLN02356 97 ESGQLFPGGVVT-EGSAGSTAISLATVAPAYGCKCH 131 (423)
T ss_pred hCCccCCCCEEE-EeCCHHHHHHHHHHHHHcCCcEE
Confidence 334555666554 44489999999999999998654
No 472
>PRK14851 hypothetical protein; Provisional
Probab=42.87 E-value=39 Score=27.99 Aligned_cols=26 Identities=15% Similarity=0.372 Sum_probs=22.5
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
.+.+|+|.| .||+|..++......|.
T Consensus 42 ~~~~VlIvG-~GGlGs~va~~Lar~GV 67 (679)
T PRK14851 42 AEAKVAIPG-MGGVGGVHLITMVRTGI 67 (679)
T ss_pred hcCeEEEEC-cCHHHHHHHHHHHHhCC
Confidence 468899999 89999999888888876
No 473
>cd00640 Trp-synth-beta_II Tryptophan synthase beta superfamily (fold type II); this family of pyridoxal phosphate (PLP)-dependent enzymes catalyzes beta-replacement and beta-elimination reactions. This CD corresponds to aminocyclopropane-1-carboxylate deaminase (ACCD), tryptophan synthase beta chain (Trp-synth_B), cystathionine beta-synthase (CBS), O-acetylserine sulfhydrylase (CS), serine dehydratase (Ser-dehyd), threonine dehydratase (Thr-dehyd), diaminopropionate ammonia lyase (DAL), and threonine synthase (Thr-synth). ACCD catalyzes the conversion of 1-aminocyclopropane-1-carboxylate to alpha-ketobutyrate and ammonia. Tryptophan synthase folds into a tetramer, where the beta chain is the catalytic PLP-binding subunit and catalyzes the formation of L-tryptophan from indole and L-serine. CBS is a tetrameric hemeprotein that catalyzes condensation of serine and homocysteine to cystathionine. CS is a homodimer that catalyzes the formation of L-cysteine from O-acetyl-L-serine. Ser-dehy
Probab=42.75 E-value=77 Score=22.07 Aligned_cols=29 Identities=21% Similarity=0.352 Sum_probs=22.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++. +|...+|..|.++...|+.+|.+++
T Consensus 49 ~~~~-vv~~ssGN~g~alA~~a~~~g~~~~ 77 (244)
T cd00640 49 PKGV-IIESTGGNTGIALAAAAARLGLKCT 77 (244)
T ss_pred CCCE-EEEeCCcHHHHHHHHHHHHcCCCEE
Confidence 3454 4555578999999999999998654
No 474
>PF01455 HupF_HypC: HupF/HypC family; InterPro: IPR001109 The large subunit of [NiFe]-hydrogenase, as well as other nickel metalloenzymes, is synthesised as a precursor devoid of the metalloenzyme active site. This precursor then undergoes a complex post-translational maturation process that requires a number of accessory proteins. The hydrogenase expression/formation proteins (HupF/HypC) form a family of small proteins that are hydrogenase precursor-specific chaperones required for this maturation process []. They are believed to keep the hydrogenase precursor in a conformation accessible for metal incorporation [, ].; PDB: 3D3R_A 2Z1C_C 2OT2_A.
Probab=42.67 E-value=19 Score=20.52 Aligned_cols=14 Identities=43% Similarity=0.786 Sum_probs=9.5
Q ss_pred cCCCCCCEEEEecC
Q psy3430 87 GKMRPGESLLVHAG 100 (121)
Q Consensus 87 ~~~~~g~~vli~ga 100 (121)
..+++||+||||.+
T Consensus 36 ~~v~~Gd~VLVHaG 49 (68)
T PF01455_consen 36 PDVKVGDYVLVHAG 49 (68)
T ss_dssp TSB-TT-EEEEETT
T ss_pred CCCCCCCEEEEecC
Confidence 34789999999973
No 475
>cd01523 RHOD_Lact_B Member of the Rhodanese Homology Domain superfamily. This CD includes predicted proteins with rhodanese-like domains found N-terminal of the metallo-beta-lactamase domain.
Probab=42.65 E-value=70 Score=18.73 Aligned_cols=31 Identities=16% Similarity=0.197 Sum_probs=23.9
Q ss_pred CCCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430 89 MRPGESLLVHAGAGGLGQAAISIALHMGCTV 119 (121)
Q Consensus 89 ~~~g~~vli~ga~g~vG~~aiqla~~~G~~v 119 (121)
+.+++.|+++-.+|.-...+.+.++..|.++
T Consensus 58 ~~~~~~ivv~C~~G~rs~~aa~~L~~~G~~~ 88 (100)
T cd01523 58 LPDDQEVTVICAKEGSSQFVAELLAERGYDV 88 (100)
T ss_pred CCCCCeEEEEcCCCCcHHHHHHHHHHcCcee
Confidence 4567778777778878888888888888763
No 476
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=42.56 E-value=44 Score=24.57 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.3
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCC
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGC 117 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~ 117 (121)
...+|||.| .|++|.-+++-.-..|.
T Consensus 18 ~~s~VLIvG-~gGLG~EiaKnLalaGV 43 (286)
T cd01491 18 QKSNVLISG-LGGLGVEIAKNLILAGV 43 (286)
T ss_pred hcCcEEEEc-CCHHHHHHHHHHHHcCC
Confidence 347899999 89999999988888887
No 477
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=42.50 E-value=32 Score=29.61 Aligned_cols=27 Identities=37% Similarity=0.349 Sum_probs=23.4
Q ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 93 ESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 93 ~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..|+|.| +|+-|+.|+..+...|.+|+
T Consensus 164 ~dVvIIG-aGPAGLaAA~~aar~G~~V~ 190 (985)
T TIGR01372 164 CDVLVVG-AGPAGLAAALAAARAGARVI 190 (985)
T ss_pred CCEEEEC-CCHHHHHHHHHHHhCCCcEE
Confidence 3599999 89999999999988998775
No 478
>PRK14727 putative mercuric reductase; Provisional
Probab=42.38 E-value=51 Score=25.70 Aligned_cols=28 Identities=18% Similarity=0.134 Sum_probs=23.9
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.++++|.| +|.+|.-.++.++.+|.+|.
T Consensus 188 ~k~vvVIG-gG~iG~E~A~~l~~~G~~Vt 215 (479)
T PRK14727 188 PASLTVIG-SSVVAAEIAQAYARLGSRVT 215 (479)
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcCCEEE
Confidence 48899999 78999988888888898765
No 479
>PLN02970 serine racemase
Probab=42.31 E-value=64 Score=23.91 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=21.0
Q ss_pred CEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 93 ESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 93 ~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+.|+ ...+|..|.++.-.++.+|.+++
T Consensus 76 ~~vv-~aSsGN~g~alA~~a~~~G~~~~ 102 (328)
T PLN02970 76 KGVV-THSSGNHAAALALAAKLRGIPAY 102 (328)
T ss_pred CeEE-EECCcHHHHHHHHHHHHcCCCEE
Confidence 3454 45589999999999999998654
No 480
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=42.15 E-value=39 Score=28.60 Aligned_cols=28 Identities=32% Similarity=0.334 Sum_probs=23.6
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..+|+|.| +|..|+.+...+...|.+|+
T Consensus 238 ~~~v~IiG-aG~aGl~aA~~L~~~g~~v~ 265 (808)
T PLN02328 238 PANVVVVG-AGLAGLVAARQLLSMGFKVV 265 (808)
T ss_pred CCCEEEEC-cCHHHHHHHHHHHHCCCcEE
Confidence 45699998 89999999998888898765
No 481
>PLN02293 adenine phosphoribosyltransferase
Probab=42.13 E-value=83 Score=21.49 Aligned_cols=34 Identities=38% Similarity=0.524 Sum_probs=26.9
Q ss_pred cCCCCCCEEEEec---CCchHHHHHHHHHHHCCCEEe
Q psy3430 87 GKMRPGESLLVHA---GAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 87 ~~~~~g~~vli~g---a~g~vG~~aiqla~~~G~~vi 120 (121)
..+.+|++|+|.- ++|+.=..++++++..|++++
T Consensus 120 ~~i~~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga~~v 156 (187)
T PLN02293 120 GAVEPGERALVIDDLIATGGTLCAAINLLERAGAEVV 156 (187)
T ss_pred CccCCCCEEEEEeccccchHHHHHHHHHHHHCCCEEE
Confidence 4567899998873 377788888999999999754
No 482
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=41.53 E-value=72 Score=27.55 Aligned_cols=33 Identities=21% Similarity=0.244 Sum_probs=25.8
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCCCE
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT 118 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G~~ 118 (121)
+...+.++++|+|.| +|.+|.-.+..+...|.+
T Consensus 310 ~~~~~~~gk~VvViG-~G~~g~e~A~~L~~~G~~ 342 (985)
T TIGR01372 310 NRYGVAPGKRIVVAT-NNDSAYRAAADLLAAGIA 342 (985)
T ss_pred HhhCcCCCCeEEEEC-CCHHHHHHHHHHHHcCCc
Confidence 334566899999998 799998887777778864
No 483
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=41.31 E-value=48 Score=25.19 Aligned_cols=29 Identities=17% Similarity=0.177 Sum_probs=23.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+++|+|.| +|.+|.-++..++..|.+|.
T Consensus 136 ~~~~vvViG-gG~~g~e~A~~l~~~g~~Vt 164 (427)
T TIGR03385 136 KVENVVIIG-GGYIGIEMAEALRERGKNVT 164 (427)
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHhCCCcEE
Confidence 467899998 78899888888887887654
No 484
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=41.27 E-value=83 Score=24.18 Aligned_cols=29 Identities=17% Similarity=0.111 Sum_probs=23.6
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+++++|.| +|.+|.-..+.++.+|.+|.
T Consensus 147 ~~~~vvViG-gG~ig~E~A~~l~~~g~~Vt 175 (438)
T PRK13512 147 QVDKALVVG-AGYISLEVLENLYERGLHPT 175 (438)
T ss_pred CCCEEEEEC-CCHHHHHHHHHHHhCCCcEE
Confidence 457899999 78999888888888888764
No 485
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=41.25 E-value=48 Score=25.81 Aligned_cols=29 Identities=24% Similarity=0.283 Sum_probs=24.2
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..++++|.| +|.+|.-..+....+|.+|.
T Consensus 173 ~~~~vvIiG-gG~iG~E~A~~l~~~G~~Vt 201 (471)
T PRK06467 173 VPKRLLVMG-GGIIGLEMGTVYHRLGSEVD 201 (471)
T ss_pred CCCeEEEEC-CCHHHHHHHHHHHHcCCCEE
Confidence 357999999 79999988888888888764
No 486
>TIGR02717 AcCoA-syn-alpha acetyl coenzyme A synthetase (ADP forming), alpha domain. Although technically reversible, it is believed that this group of ADP-dependent acetyl-CoA synthetases (ACS) act in the direction of acetate and ATP production in the organisms in which it has been characterized. In most species this protein exists as a fused alpha-beta domain polypeptide. In Pyrococcus and related species, however the domains exist as separate polypeptides. This model represents the alpha (N-terminal) domain. In Pyrococcus and related species there appears to have been the development of a paralogous family such that four other proteins are close relatives. In reference, one of these (along with its beta-domain partner) was characterized as ACS-II showing specificity for phenylacetyl-CoA. This model has been constructed to exclude these non-ACS-I paralogs. This may result in new, authentic ACS-I sequences falling below the trusted cutoff.
Probab=41.15 E-value=88 Score=24.38 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=26.9
Q ss_pred CCCCCCEEEEecCCchHHHHHHHHHHHCCCEE
Q psy3430 88 KMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119 (121)
Q Consensus 88 ~~~~g~~vli~ga~g~vG~~aiqla~~~G~~v 119 (121)
+..+|++|.|...+|+.|.++...+...|.++
T Consensus 291 ~~~~g~rvaivs~sGG~g~l~aD~~~~~Gl~l 322 (447)
T TIGR02717 291 PLPKGNRVAIITNAGGPGVIATDACEENGLEL 322 (447)
T ss_pred CCCCCCeEEEEECCchHHHHHHHHHHHcCCCc
Confidence 34578999888889999999999999888653
No 487
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=41.03 E-value=26 Score=26.50 Aligned_cols=29 Identities=31% Similarity=0.511 Sum_probs=23.3
Q ss_pred CCCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 90 RPGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 90 ~~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++ +|.|.| .|-+|.-+.++|..+|++|.
T Consensus 167 ~~~-kv~iiG-GGvvgtnaAkiA~glgA~Vt 195 (371)
T COG0686 167 LPA-KVVVLG-GGVVGTNAAKIAIGLGADVT 195 (371)
T ss_pred CCc-cEEEEC-CccccchHHHHHhccCCeeE
Confidence 344 455666 68999999999999999886
No 488
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=41.00 E-value=50 Score=25.41 Aligned_cols=29 Identities=31% Similarity=0.340 Sum_probs=24.4
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
.+++++|.| +|.+|.-.++..+.+|.+|.
T Consensus 174 ~~~~v~IiG-gG~~g~E~A~~l~~~g~~Vt 202 (461)
T PRK05249 174 LPRSLIIYG-AGVIGCEYASIFAALGVKVT 202 (461)
T ss_pred cCCeEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 468999999 79999888888888888764
No 489
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=40.97 E-value=68 Score=21.98 Aligned_cols=30 Identities=27% Similarity=0.333 Sum_probs=22.5
Q ss_pred hhcCCCCCCEEEEecCCchHHHHHHHHHHHCC
Q psy3430 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMG 116 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~vG~~aiqla~~~G 116 (121)
+...++++++||=.| .|.|..++.+++..+
T Consensus 71 ~~l~~~~~~~VLDiG--~GsG~~a~~la~~~~ 100 (215)
T TIGR00080 71 ELLELKPGMKVLEIG--TGSGYQAAVLAEIVG 100 (215)
T ss_pred HHhCCCCcCEEEEEC--CCccHHHHHHHHHhC
Confidence 556789999999887 345777777777654
No 490
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=40.91 E-value=49 Score=25.59 Aligned_cols=29 Identities=21% Similarity=0.331 Sum_probs=24.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
..++++|.| +|.+|.-+++.++.+|.+|.
T Consensus 171 ~~~~vvVIG-gG~ig~E~A~~l~~~G~~Vt 199 (466)
T PRK07818 171 LPKSIVIAG-AGAIGMEFAYVLKNYGVDVT 199 (466)
T ss_pred CCCeEEEEC-CcHHHHHHHHHHHHcCCeEE
Confidence 357899999 78999988888888888764
No 491
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=40.91 E-value=50 Score=25.67 Aligned_cols=28 Identities=29% Similarity=0.280 Sum_probs=23.8
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++|+|.| +|.+|.-..+..+.+|.+|+
T Consensus 183 ~~~vvVvG-gG~~g~E~A~~l~~~g~~Vt 210 (475)
T PRK06327 183 PKKLAVIG-AGVIGLELGSVWRRLGAEVT 210 (475)
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 57999998 78999888888888888765
No 492
>COG0332 FabH 3-oxoacyl-[acyl-carrier-protein]
Probab=40.83 E-value=29 Score=26.05 Aligned_cols=24 Identities=33% Similarity=0.689 Sum_probs=18.0
Q ss_pred HHHHhhcCCCCCCEEEEecCCchH
Q psy3430 81 YSLIVRGKMRPGESLLVHAGAGGL 104 (121)
Q Consensus 81 ~~l~~~~~~~~g~~vli~ga~g~v 104 (121)
.-..+..++++||.+|+.+..++.
T Consensus 290 ~~~~~~g~ik~Gd~ill~~fG~Gl 313 (323)
T COG0332 290 DEALREGRIKPGDLVLLEAFGGGL 313 (323)
T ss_pred HHHhhhCCCCCCCEEEEEeecCcc
Confidence 333467899999999999865553
No 493
>PRK12560 adenine phosphoribosyltransferase; Provisional
Probab=40.70 E-value=91 Score=21.23 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=25.7
Q ss_pred CCCCCCEEEEec---CCchHHHHHHHHHHHCCCEEe
Q psy3430 88 KMRPGESLLVHA---GAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 88 ~~~~g~~vli~g---a~g~vG~~aiqla~~~G~~vi 120 (121)
.+.+|++|+|.- ++|+.=..++++++..|++++
T Consensus 110 ~~~~G~rVlIVDDvitTG~T~~~ai~ll~~aGa~vv 145 (187)
T PRK12560 110 GIEKGDRVAIIDDTLSTGGTVIALIKAIENSGGIVS 145 (187)
T ss_pred CCCCcCEEEEEEeccccCHHHHHHHHHHHHCCCEEE
Confidence 356899998762 367777889999999999764
No 494
>PTZ00058 glutathione reductase; Provisional
Probab=40.56 E-value=42 Score=27.04 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=21.4
Q ss_pred EEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 95 LLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 95 vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
|+|.| +|+-|..++.-|...|.+|.
T Consensus 51 vvVIG-~G~aG~~aA~~aa~~G~~Va 75 (561)
T PTZ00058 51 LIVIG-GGSGGMAAARRAARNKAKVA 75 (561)
T ss_pred EEEEC-cCHHHHHHHHHHHHcCCeEE
Confidence 78888 79999999988888999874
No 495
>PRK08246 threonine dehydratase; Provisional
Probab=40.47 E-value=89 Score=22.94 Aligned_cols=29 Identities=21% Similarity=0.349 Sum_probs=22.0
Q ss_pred CCCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 91 PGESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 91 ~g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++.|+.. .+|..|+++...|+.+|.+++
T Consensus 67 ~~~~vv~a-SsGN~g~a~A~~a~~~G~~~~ 95 (310)
T PRK08246 67 PAAGVVAA-SGGNAGLAVAYAAAALGVPAT 95 (310)
T ss_pred cCCeEEEe-CCCHHHHHHHHHHHHcCCCEE
Confidence 45665554 488999999999999987543
No 496
>PLN02546 glutathione reductase
Probab=40.41 E-value=43 Score=26.95 Aligned_cols=25 Identities=28% Similarity=0.332 Sum_probs=21.8
Q ss_pred EEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 95 LLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 95 vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
|+|.| +|+-|..+...|..+|.+|.
T Consensus 82 vvVIG-~GpaG~~aA~~aa~~G~~V~ 106 (558)
T PLN02546 82 LFTIG-AGSGGVRASRFASNFGASAA 106 (558)
T ss_pred EEEEC-CCHHHHHHHHHHHHCCCeEE
Confidence 78888 78899999988888999885
No 497
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=40.32 E-value=55 Score=21.69 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=26.5
Q ss_pred cCCCCCCEEEEecCCch--HHHHHHHHHHHCCCEEeC
Q psy3430 87 GKMRPGESLLVHAGAGG--LGQAAISIALHMGCTVYT 121 (121)
Q Consensus 87 ~~~~~g~~vli~ga~g~--vG~~aiqla~~~G~~vi~ 121 (121)
..+.++|.+++..-+|. -=.-+++.||..|+++++
T Consensus 97 ~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~ 133 (177)
T cd05006 97 ALGQPGDVLIGISTSGNSPNVLKALEAAKERGMKTIA 133 (177)
T ss_pred HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 35789999877765554 457788999999998863
No 498
>PRK14694 putative mercuric reductase; Provisional
Probab=40.28 E-value=53 Score=25.47 Aligned_cols=28 Identities=25% Similarity=0.204 Sum_probs=23.5
Q ss_pred CCEEEEecCCchHHHHHHHHHHHCCCEEe
Q psy3430 92 GESLLVHAGAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 92 g~~vli~ga~g~vG~~aiqla~~~G~~vi 120 (121)
+++++|.| +|.+|.-.+..++.+|.+|+
T Consensus 178 ~~~vvViG-~G~~G~E~A~~l~~~g~~Vt 205 (468)
T PRK14694 178 PERLLVIG-ASVVALELAQAFARLGSRVT 205 (468)
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcCCeEE
Confidence 57999999 78999888888888888764
No 499
>PRK13938 phosphoheptose isomerase; Provisional
Probab=40.09 E-value=97 Score=21.32 Aligned_cols=37 Identities=30% Similarity=0.471 Sum_probs=27.8
Q ss_pred hhcCCCCCCEEEEecCCch--HHHHHHHHHHHCCCEEeC
Q psy3430 85 VRGKMRPGESLLVHAGAGG--LGQAAISIALHMGCTVYT 121 (121)
Q Consensus 85 ~~~~~~~g~~vli~ga~g~--vG~~aiqla~~~G~~vi~ 121 (121)
.....+++|-+++...+|. -=.-+++.||..|+++++
T Consensus 107 ~~~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~ 145 (196)
T PRK13938 107 LEGSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVA 145 (196)
T ss_pred HHhcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEE
Confidence 3467889999888765553 346788899999998863
No 500
>PLN02918 pyridoxine (pyridoxamine) 5'-phosphate oxidase
Probab=39.73 E-value=1.2e+02 Score=24.51 Aligned_cols=29 Identities=24% Similarity=0.321 Sum_probs=21.8
Q ss_pred CCEEEEec---CCchHHHHHHHHHHHCCCEEe
Q psy3430 92 GESLLVHA---GAGGLGQAAISIALHMGCTVY 120 (121)
Q Consensus 92 g~~vli~g---a~g~vG~~aiqla~~~G~~vi 120 (121)
+.+|+|.- ..||=|+.+...++..|.+|.
T Consensus 135 ~~~VlVlcGpGNNGGDGLVaAR~L~~~G~~V~ 166 (544)
T PLN02918 135 YSRVLAICGPGNNGGDGLVAARHLHHFGYKPF 166 (544)
T ss_pred CCEEEEEECCCcCHHHHHHHHHHHHHCCCceE
Confidence 45777763 355778999999999998764
Done!