RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3430
(121 letters)
>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme,
megasynthase, fatty acid synthesis; 3.2A {Sus scrofa}
PDB: 2vz9_A*
Length = 2512
Score = 168 bits (428), Expect = 6e-50
Identities = 77/121 (63%), Positives = 100/121 (82%)
Query: 1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
MLA+GKL PD++PG +DC+LG+EFSGRD GRRVMG+V A LAT+VL WEV
Sbjct: 1577 MLATGKLSPDSIPGKWLTRDCMLGMEFSGRDASGRRVMGMVPAEGLATSVLLLQHATWEV 1636
Query: 61 PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
P+ WTLEEA+++P+VY TAYYSL+VRG+M+PGES+L+H+G+GG+GQAAI+IAL GC V+
Sbjct: 1637 PSTWTLEEAASVPIVYTTAYYSLVVRGRMQPGESVLIHSGSGGVGQAAIAIALSRGCRVF 1696
Query: 121 T 121
T
Sbjct: 1697 T 1697
>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH,
oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora
spinosa}
Length = 795
Score = 133 bits (336), Expect = 1e-37
Identities = 48/122 (39%), Positives = 71/122 (58%), Gaps = 3/122 (2%)
Query: 1 MLASGKLPPDALPG-DLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWE 59
++A G P A G + AG G +G G RVMG+ ++ +AD +
Sbjct: 256 LIALGMYPGVASLGSEGAGVVVETGPGVTGLA-PGDRVMGM-IPKAFGPLAVADHRMVTR 313
Query: 60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
+PA W+ A+++P+V+ TAYY+L+ +RPGESLLVH+ AGG+G AAI +A H+G V
Sbjct: 314 IPAGWSFARAASVPIVFLTAYYALVDLAGLRPGESLLVHSAAGGVGMAAIQLARHLGAEV 373
Query: 120 YT 121
Y
Sbjct: 374 YA 375
>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics,
PSI, protein STRU initiative; 2.66A {Mycobacterium
tuberculosis} SCOP: c.2.1.1
Length = 198
Score = 111 bits (279), Expect = 4e-32
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 55 SFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALH 114
+ +P EA+T V Y TA++SL G++ PGE +L+H+ GG+G AA+SIA
Sbjct: 2 DLVVPIPDTLADNEAATFGVAYLTAWHSLCEVGRLSPGERVLIHSATGGVGMAAVSIAKM 61
Query: 115 MGCTVYT 121
+G +YT
Sbjct: 62 IGARIYT 68
>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein
structure initiati structural genomics research
consortium, nysgrc; 2.45A {Rhizobium etli}
Length = 353
Score = 98.0 bits (245), Expect = 7e-26
Identities = 31/110 (28%), Positives = 47/110 (42%), Gaps = 10/110 (9%)
Query: 22 VLGLEFSG----------RDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAST 71
+LGLE SG G +V GL + A L + P + +A+
Sbjct: 88 ILGLELSGEIVGVGPGVSGYAVGDKVCGLANGGAYAEYCLLPAGQILPFPKGYDAVKAAA 147
Query: 72 IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
+P + T + +L + GES+L+H G G+G AI +A G VY
Sbjct: 148 LPETFFTVWANLFQMAGLTEGESVLIHGGTSGIGTTAIQLARAFGAEVYA 197
>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase;
2.10A {Homo sapiens}
Length = 349
Score = 97.3 bits (243), Expect = 1e-25
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 10/111 (9%)
Query: 21 CVLGLEFSG----------RDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAS 70
V G E SG G RVM V + A V F++++P + EA+
Sbjct: 62 LVPGFECSGIVEALGDSVKGYEIGDRVMAFVNYNAWAEVVCTPVEFVYKIPDDMSFSEAA 121
Query: 71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
P+ + TAY L +R G S+LVH+ GG+GQA + +
Sbjct: 122 AFPMNFVTAYVMLFEVANLREGMSVLVHSAGGGVGQAVAQLCSTVPNVTVF 172
>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases,
QUIN oxidoreductase, oxidative stress response; HET:
NAP; 2.50A {Homo sapiens} PDB: 2oby_A*
Length = 354
Score = 96.9 bits (242), Expect = 2e-25
Identities = 33/111 (29%), Positives = 48/111 (43%), Gaps = 11/111 (9%)
Query: 22 VLGLEFSG-----------RDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAS 70
+LGLE SG G M L+ A V L +P TL +A+
Sbjct: 82 ILGLEASGHVAELGPGCQGHWKIGDTAMALLPGGGQAQYVTVPEGLLMPIPEGLTLTQAA 141
Query: 71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
IP + TA+ L + G ++ G+ +L+HAG G+G AAI + G
Sbjct: 142 AIPEAWLTAFQLLHLVGNVQAGDYVLIHAGLSGVGTAAIQLTRMAGAIPLV 192
>4eye_A Probable oxidoreductase; structural genomics, niaid, national
institute of allergy AN infectious diseases; 2.10A
{Mycobacterium abscessus}
Length = 342
Score = 96.9 bits (242), Expect = 2e-25
Identities = 37/109 (33%), Positives = 49/109 (44%), Gaps = 9/109 (8%)
Query: 22 VLGLEFSGRDTK---------GRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTI 72
V G+E +G G RVM A V PS + P + EA +
Sbjct: 81 VPGIETAGVVRSAPEGSGIKPGDRVMAFNFIGGYAERVAVAPSNILPTPPQLDDAEAVAL 140
Query: 73 PVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
Y T Y++ RG++R GE++LV AGG+G AAI IA MG V
Sbjct: 141 IANYHTMYFAYARRGQLRAGETVLVLGAAGGIGTAAIQIAKGMGAKVIA 189
>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural
genomics/proteomics initiative, RSGI, structural
genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 1iyz_A 2cf2_D
Length = 302
Score = 94.5 bits (236), Expect = 7e-25
Identities = 40/100 (40%), Positives = 52/100 (52%), Gaps = 2/100 (2%)
Query: 22 VLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYY 81
+ G+E G +GRR LV LA V L +P + EEA+ PV + TAY
Sbjct: 58 IPGMEVVGV-VEGRRYAALVPQGGLAERVAVPKGALLPLPEGLSPEEAAAFPVSFLTAYL 116
Query: 82 SLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
+L R + RPGE +LV A AG LG AA+ +A MG V
Sbjct: 117 AL-KRAQARPGEKVLVQAAAGALGTAAVQVARAMGLRVLA 155
>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain
dehydrogenase/reductase, oxidoreductase, 2-ENOY
thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A
Length = 357
Score = 87.3 bits (217), Expect = 7e-22
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 22 VLGLEFSG----------RDTKGRRVMGLVAAR-SLATTVLADPSFLWEVPAKWTLEEAS 70
V G E G V+ A + T + L +VP+ L+ A+
Sbjct: 87 VGGNEGVAQVVAVGSNVTGLKPGDWVIPANAGLGTWRTEAVFSEEALIQVPSDIPLQSAA 146
Query: 71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
T+ V TAY L+ +++PG+S++ +A G+GQA I IA +G
Sbjct: 147 TLGVNPCTAYRMLMDFEQLQPGDSVIQNASNSGVGQAVIQIAAALGLRT 195
>3gms_A Putative NADPH:quinone reductase; structural genomics, putative
quinone oxidoreductase, unknown function, PSI-2; 1.76A
{Bacillus thuringiensis}
Length = 340
Score = 85.7 bits (213), Expect = 2e-21
Identities = 19/110 (17%), Positives = 40/110 (36%), Gaps = 10/110 (9%)
Query: 22 VLGLEFSG----------RDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAST 71
+ G E G R+ G+RV+ L + V F+ +P A+
Sbjct: 65 IPGYEGVGIVENVGAFVSRELIGKRVLPLRGEGTWQEYVKTSADFVVPIPDSIDDFTAAQ 124
Query: 72 IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
+ + TA+ + ++ + LLV+A +G ++ + +
Sbjct: 125 MYINPLTAWVTCTETLNLQRNDVLLVNACGSAIGHLFAQLSQILNFRLIA 174
>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase,
quinon reduction, structural genomics, structural
genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP:
b.35.1.2 c.2.1.1
Length = 351
Score = 85.3 bits (212), Expect = 3e-21
Identities = 32/111 (28%), Positives = 50/111 (45%), Gaps = 11/111 (9%)
Query: 22 VLGLEFSG----------RDTKGRRVM-GLVAARSLATTVLADPSFLWEVPAKWTLEEAS 70
G + +G KG RV + A LA ++++P K ++ +
Sbjct: 90 TPGSDVAGVIEAVGDNASAFKKGDRVFTSSTISGGYAEYALAADHTVYKLPEKLDFKQGA 149
Query: 71 TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
I + Y TAY +LI ++ GES+LVH +GG+G AA IA G +
Sbjct: 150 AIGIPYFTAYRALIHSACVKAGESVLVHGASGGVGLAACQIARAYGLKILG 200
>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural
genomics, NPPSFA, natio project on protein structural
and functional analyses; 2.30A {Thermus thermophilus}
Length = 343
Score = 84.9 bits (211), Expect = 4e-21
Identities = 29/106 (27%), Positives = 48/106 (45%)
Query: 16 LAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVV 75
L+ C L +++G + A V+ + L P + EEA+ IP+
Sbjct: 91 LSCGRCERCLAGEDNLCPRYQILGEHRHGTYAEYVVLPEANLAPKPKNLSFEEAAAIPLT 150
Query: 76 YATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
+ TA+ ++ + +RPG+ +LV A G+ AAI IA G V
Sbjct: 151 FLTAWQMVVDKLGVRPGDDVLVMAAGSGVSVAAIQIAKLFGARVIA 196
>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II,
alcohol dehydrogenase superf structural genomics; 1.96A
{Novosphingobium aromaticivorans}
Length = 343
Score = 85.0 bits (211), Expect = 5e-21
Identities = 36/132 (27%), Positives = 57/132 (43%), Gaps = 22/132 (16%)
Query: 5 GKLPPDALPGDLAGQDCVLGLEFSG----------RDTKGRRVMGLVAAR-----SLATT 49
LP +LG++ +G G V GL + A
Sbjct: 56 APHAQQPLPA-------ILGMDLAGTVVAVGPEVDSFRVGDAVFGLTGGVGGLQGTHAQF 108
Query: 50 VLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAI 109
D L PA T+ +AS +P+V+ TA+ L+ R +++ G+++L+ G GG+G AI
Sbjct: 109 AAVDARLLASKPAALTMRQASVLPLVFITAWEGLVDRAQVQDGQTVLIQGGGGGVGHVAI 168
Query: 110 SIALHMGCTVYT 121
IAL G V+
Sbjct: 169 QIALARGARVFA 180
>3uog_A Alcohol dehydrogenase; structural genomics, protein structure
initiative, PSI-biolo YORK structural genomics research
consortium; 2.20A {Sinorhizobium meliloti 1021}
Length = 363
Score = 82.7 bits (205), Expect = 4e-20
Identities = 29/113 (25%), Positives = 46/113 (40%), Gaps = 5/113 (4%)
Query: 13 PGD----LAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEE 68
PGD + GL T +G L+ V+ + P E
Sbjct: 107 PGDRVISTFAPGWLDGLRPGTGRTPAYETLGGAHPGVLSEYVVLPEGWFVAAPKSLDAAE 166
Query: 69 ASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
AST+P TA+++L+ +G +R G+ ++V G GG+ + IA G V
Sbjct: 167 ASTLPCAGLTAWFALVEKGHLRAGDRVVVQ-GTGGVALFGLQIAKATGAEVIV 218
>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold,
structural GE joint center for structural genomics,
JCSG; HET: MSE; 1.71A {Mesorhizobium loti}
Length = 349
Score = 80.0 bits (198), Expect = 3e-19
Identities = 25/120 (20%), Positives = 42/120 (35%), Gaps = 7/120 (5%)
Query: 8 PPDA--LPG-DLAGQDCVLGLEFSGRDTKGRRV---MGLVAARSLATTVLADPSFLWEVP 61
P G + G G E + G+RV GL S A +A+ + +
Sbjct: 76 PRVKGRPAGFEGVGTIVAGGDEPYAKSLVGKRVAFATGLSNWGSWAEYAVAEAAACIPLL 135
Query: 62 AKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
E+ + + V TA + K ++ ++ AGA L + I +A G
Sbjct: 136 DTVRDEDGAAMIVNPLTAIA-MFDIVKQEGEKAFVMTAGASQLCKLIIGLAKEEGFRPIV 194
>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2;
oxidoreductase, quinone oxidoreductase, medium-chain
dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens}
PDB: 2x1h_A* 2x7h_A* 2wek_A*
Length = 362
Score = 78.9 bits (195), Expect = 9e-19
Identities = 38/112 (33%), Positives = 52/112 (46%), Gaps = 3/112 (2%)
Query: 8 PPDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLE 67
PP + + G+ LGL S R T G+ V + A S A + S VP+
Sbjct: 83 PPFDIGFEGIGEVVALGLSASARYTVGQAVAYM-APGSFAEYTVVPASIATPVPS--VKP 139
Query: 68 EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
E T+ V TAY SL G + G+ +LV A AGG GQ A+ ++ C V
Sbjct: 140 EYLTLLVSGTTAYISLKELGGLSEGKKVLVTAAAGGTGQFAMQLSKKAKCHV 191
>3krt_A Crotonyl COA reductase; structural genomics, protein structure
initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces
coelicolor} PDB: 3hzz_A
Length = 456
Score = 77.1 bits (190), Expect = 6e-18
Identities = 27/118 (22%), Positives = 41/118 (34%), Gaps = 9/118 (7%)
Query: 13 PGD----LAGQDCVLGLEFSGRDTKGRRVMGLVAAR---SLATTVLADPSFLWEVPAKWT 65
GD + + LA L + L P +
Sbjct: 141 AGDEVVAHCLSVELESSDGHNDTMLDPEQRIWGFETNFGGLAEIALVKSNQLMPKPDHLS 200
Query: 66 LEEASTIPVVYATAYYSLIVR--GKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
EEA+ +V +TAY L+ R M+ G+++L+ +GGLG A AL G
Sbjct: 201 WEEAAAPGLVNSTAYRQLVSRNGAGMKQGDNVLIWGASGGLGSYATQFALAGGANPIC 258
>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}
Length = 321
Score = 75.3 bits (186), Expect = 1e-17
Identities = 35/114 (30%), Positives = 56/114 (49%), Gaps = 15/114 (13%)
Query: 22 VLGLEFSGRDTK----------GRRVMGLVAAR----SLATTVLADPSFLWEVPAKWTLE 67
LG +FSG + G +VMG+ A V A P + + K +
Sbjct: 70 GLGYDFSGEVIELGSDVNNVNIGDKVMGIAGFPDHPCCYAEYVCASPDTIIQKLEKLSFL 129
Query: 68 EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
+A+++P TA +L + +++ G+ +L+HAGAGG+G AI +A G TV T
Sbjct: 130 QAASLPTAGLTALQAL-NQAEVKQGDVVLIHAGAGGVGHLAIQLAKQKGTTVIT 182
>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific]
1,mitochondrial; oxidoreductase, thioester reduction,
fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2
c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A
Length = 364
Score = 75.5 bits (186), Expect = 1e-17
Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 23/135 (17%)
Query: 8 PPDALPGDLAGQDCVLGLEFSG----------RDTKGRRVMGLVAAR-SLATTVLADPSF 56
P G E G V+ + T L +
Sbjct: 61 PAKTTGFGTTEPAAPCGNEGLFEVIKVGSNVSSLEAGDWVIPSHVNFGTWRTHALGNDDD 120
Query: 57 LWEV-----------PAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLV-HAGAGGL 104
++ P T+ + +TI V TAY L K+ PG+ + + G +
Sbjct: 121 FIKLPNPAQSKANGKPNGLTINQGATISVNPLTAYLMLTHYVKLTPGKDWFIQNGGTSAV 180
Query: 105 GQAAISIALHMGCTV 119
G+ A I +
Sbjct: 181 GKYASQIGKLLNFNS 195
>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase,
cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A
{Streptomyces SP} PDB: 4a10_A
Length = 447
Score = 73.3 bits (180), Expect = 1e-16
Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 45 SLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVR--GKMRPGESLLVHAGAG 102
LA + S L PA T EEA+ P+ TAY L+ +M+ G+ +L+ +G
Sbjct: 172 GLAEYGVVRASQLLPKPAHLTWEEAAVSPLCAGTAYRMLVSDRGAQMKQGDIVLIWGASG 231
Query: 103 GLGQAAISIALHMGCTVYT 121
GLG AI + G
Sbjct: 232 GLGSYAIQFVKNGGGIPVA 250
>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide,
receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}
Length = 375
Score = 72.1 bits (177), Expect = 3e-16
Identities = 25/117 (21%), Positives = 45/117 (38%), Gaps = 17/117 (14%)
Query: 22 VLGLEFSG----------RDTKGRRVMGLVAAR---SLATTVLADPSFLWEVPAKWTLEE 68
LG + SG G V V +L+ V+ + + P T +
Sbjct: 97 TLGRDVSGVVMECGLDVKYFKPGDEVWAAVPPWKQGTLSEFVVVSGNEVSHKPKSLTHTQ 156
Query: 69 ASTIPVVYATAYYSLIVRGKMR----PGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
A+++P V TA+ ++ G + G+ +L+ +GG+G AI + V
Sbjct: 157 AASLPYVALTAWSAINKVGGLNDKNCTGKRVLILGASGGVGTFAIQVMKAWDAHVTA 213
>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann
fold, NAD binding, oxidoreductase; HET: NAP; 1.74A
{Aspergillus terreus} PDB: 3b6z_A* 3b70_A*
Length = 371
Score = 68.6 bits (168), Expect = 5e-15
Identities = 24/145 (16%), Positives = 44/145 (30%), Gaps = 31/145 (21%)
Query: 8 PPDA-LPGDLAGQDCVLGLEFSG----------RDTKGRRVMGLVAARSLATT------- 49
P D + G A LG +++G G RV G T
Sbjct: 50 PSDTSMRGQFATPWAFLGTDYAGTVVAVGSDVTHIQVGDRVYGAQNEMCPRTPDQGAFSQ 109
Query: 50 -VLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRP------------GESLL 96
+ ++P + E+A+ +P +TA ++ + G P +L
Sbjct: 110 YTVTRGRVWAKIPKGLSFEQAAALPAGISTAGLAMKLLGLPLPSPSADQPPTHSKPVYVL 169
Query: 97 VHAGAGGLGQAAISIALHMGCTVYT 121
V+ G+ + + G
Sbjct: 170 VYGGSTATATVTMQMLRLSGYIPIA 194
>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur
genomics, joint center for structural genomics, JCSG,
prote structure initiative; HET: MSE NDP; 1.70A
{Ralstonia eutropha}
Length = 379
Score = 64.6 bits (157), Expect = 1e-13
Identities = 17/114 (14%), Positives = 34/114 (29%), Gaps = 11/114 (9%)
Query: 18 GQDCVLGLEFSGR----------DTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLE 67
+G E +G + + + + +P T
Sbjct: 89 DASMPVGNEGAGVVVEAGSSPAAQALMGKTVAAIGGAMYSQYRCIPADQCLVLPEGATPA 148
Query: 68 EASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVYT 121
+ ++ V TA ++ ++ +L+ A A LGQ I L G +
Sbjct: 149 DGASSFVNPLTALG-MVETMRLEGHSALVHTAAASNLGQMLNQICLKDGIKLVN 201
>3fbg_A Putative arginate lyase; structural genomics, unknown function,
PSI-2, protein structure initiative; 1.60A
{Staphylococcus haemolyticus}
Length = 346
Score = 64.2 bits (157), Expect = 2e-13
Identities = 25/83 (30%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Query: 45 SLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGK------MRPGESLLVH 98
S A L + + + P + E+A ++P+ TAY +L G++LL+
Sbjct: 98 SNAEYQLINERLVAKAPKNISAEQAVSLPLTGITAYETLFDVFGISRNRNENEGKTLLII 157
Query: 99 AGAGGLGQAAISIALHMGCTVYT 121
GAGG+G A IA G V T
Sbjct: 158 NGAGGVGSIATQIAKAYGLRVIT 180
>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol
dehydrogenase superfamily protein, ALCO dehydrogenase
groes-like domain; 1.55A {Shewanella oneidensis}
Length = 315
Score = 61.9 bits (151), Expect = 1e-12
Identities = 20/134 (14%), Positives = 42/134 (31%), Gaps = 22/134 (16%)
Query: 1 MLASGKLPPDALPGDLAGQDCVLGLEFSG----------RDTKGRRVMGLVAAR---SLA 47
+ V G++ +G GRRV + + S A
Sbjct: 47 KFIKANPINWSNGH-------VPGVDGAGVIVKVGAKVDSKMLGRRVAYHTSLKRHGSFA 99
Query: 48 TTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQA 107
+ + + +P + E A+ +P TA+ + + + +L+ G G +
Sbjct: 100 EFTVLNTDRVMTLPDNLSFERAAALPCPLLTAWQAF-EKIPLTKQREVLIV-GFGAVNNL 157
Query: 108 AISIALHMGCTVYT 121
+ + G V
Sbjct: 158 LTQMLNNAGYVVDL 171
>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural
genomics, PSI-biology, NEW YORK structural genomi
research consortium, nysgrc; 1.99A {Rhizobium etli}
Length = 363
Score = 59.7 bits (145), Expect = 6e-12
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 6/83 (7%)
Query: 45 SLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRP-----GESLLVHA 99
+ A L D + P EA+ +P+ TA+ + R + ++L+
Sbjct: 120 TNAEFHLVDERIVGRKPKTLDWAEAAALPLTSITAWEAFFDRLDVNKPVPGAAPAILIVG 179
Query: 100 GAGGLGQAAISIALHM-GCTVYT 121
GAGG+G A+ IA TV
Sbjct: 180 GAGGVGSIAVQIARQRTDLTVIA 202
>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP:
b.35.1.2 c.2.1.1
Length = 327
Score = 59.2 bits (144), Expect = 8e-12
Identities = 35/127 (27%), Positives = 54/127 (42%), Gaps = 18/127 (14%)
Query: 4 SGKLPPDALPGDLAGQDCVLGLEFSGRDTK----------GRRVMGLVAAR-SLATTVLA 52
SG PP +LP LG E +G +K G RV+ +A + ++
Sbjct: 49 SGLYPPPSLP-------SGLGTEAAGIVSKVGSGVKHIKAGDRVVYAQSALGAYSSVHNI 101
Query: 53 DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIA 112
+PA + E+A+ + T YY L +++P E L HA AGG+G A A
Sbjct: 102 IADKAAILPAAISFEQAAASFLKGLTVYYLLRKTYEIKPDEQFLFHAAAGGVGLIACQWA 161
Query: 113 LHMGCTV 119
+G +
Sbjct: 162 KALGAKL 168
>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET:
NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*
Length = 325
Score = 59.1 bits (144), Expect = 9e-12
Identities = 31/127 (24%), Positives = 50/127 (39%), Gaps = 18/127 (14%)
Query: 4 SGKLPPDALPGDLAGQDCVLGLEFSGRDTK----------GRRVMGLVAAR-SLATTVLA 52
SG P LP LG E +G G RV + + +
Sbjct: 49 SGLYPAPFLPS-------GLGAEGAGVVEAVGDEVTRFKVGDRVAYGTGPLGAYSEVHVL 101
Query: 53 DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIA 112
+ L ++ + E+A+ + + T Y L +++PGE +L HA AGG+G A A
Sbjct: 102 PEANLVKLADSVSFEQAAALMLKGLTVQYLLRQTYQVKPGEIILFHAAAGGVGSLACQWA 161
Query: 113 LHMGCTV 119
+G +
Sbjct: 162 KALGAKL 168
>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase,
oxidoreductase; 1.30A {Burkholderia SP}
Length = 333
Score = 58.4 bits (142), Expect = 2e-11
Identities = 32/126 (25%), Positives = 51/126 (40%), Gaps = 20/126 (15%)
Query: 7 LPPDALPGDLAGQDCVLGLEFSGRDTK----------GRRVMGLVAAR-SLATTVLADPS 55
L P V+G E + + G RV + + + L
Sbjct: 55 LVVGEPP-------IVVGFEAAAVVEEVGPGVTDFTVGERVCTCLPPLGAYSQERLYPAE 107
Query: 56 FLWEVPAKWTLEEAS--TIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIAL 113
L +VP L++ + + TA Y L K++PG+ +L+HA AGG+G + A
Sbjct: 108 KLIKVPKDLDLDDVHLAGLMLKGMTAQYLLHQTHKVKPGDYVLIHAAAGGMGHIMVPWAR 167
Query: 114 HMGCTV 119
H+G TV
Sbjct: 168 HLGATV 173
>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone
oxidoreductases, NADPH, cytoplasm and oxidoreductase;
HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*
Length = 334
Score = 54.9 bits (133), Expect = 3e-10
Identities = 21/111 (18%), Positives = 39/111 (35%), Gaps = 13/111 (11%)
Query: 22 VLGLEFSGRDTK----------GRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEAST 71
VLG E SG G +V + + + ++ + ++P + EE
Sbjct: 66 VLGREASGTVVAKGKGVTNFEVGDQVAYISNSTFAQYSKISSQGPVMKLPKGTSDEELKL 125
Query: 72 ---IPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
+ TA ++ G+ +L+ A AGG+G + G
Sbjct: 126 YAAGLLQVLTALSFTNEAYHVKKGDYVLLFAAAGGVGLILNQLLKMKGAHT 176
>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc,
oxidoreductase; HET: MSE; 1.85A {Sulfolobus
solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A
1nvg_A 3i4c_A 2eer_A*
Length = 347
Score = 46.8 bits (112), Expect = 2e-07
Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Query: 45 SLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGL 104
+ A V+ + EA+ + T Y ++ + + P ++LLV GGL
Sbjct: 125 AYAEYVIVPHYKYMYKLRRLNAVEAAPLTCSGITTYRAV-RKASLDPTKTLLVVGAGGGL 183
Query: 105 GQAAISIALHMG 116
G A+ IA +
Sbjct: 184 GTMAVQIAKAVS 195
>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase
(AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB:
2j3i_A* 2j3j_A* 2j3k_A*
Length = 345
Score = 43.7 bits (104), Expect = 3e-06
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 78 TAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
TAY + GE++ V A +G +GQ +A MGC V
Sbjct: 142 TAYAGFYEVCSPKEGETVYVSAASGAVGQLVGQLAKMMGCYV 183
>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto
reductase; rossmann fold, riken structural
genomics/proteomics initiative, RSGI; 2.00A {Cavia
porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A*
2dm6_A* 1zsv_A 2y05_A*
Length = 333
Score = 43.3 bits (103), Expect = 4e-06
Identities = 17/42 (40%), Positives = 24/42 (57%)
Query: 78 TAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTV 119
TAY+ L+ ++ GE++LV A AG +G IA GC V
Sbjct: 132 TAYFGLLEVCGVKGGETVLVSAAAGAVGSVVGQIAKLKGCKV 173
>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold,
oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB:
2xaa_A*
Length = 345
Score = 41.4 bits (98), Expect = 2e-05
Identities = 20/94 (21%), Positives = 33/94 (35%), Gaps = 7/94 (7%)
Query: 26 EFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL-I 84
G G G S+A ++ D + A+ + T Y+++
Sbjct: 110 ADLGITPPGLGSPG-----SMAEYMIVDSARHLVPIGDLDPVAAAPLTDAGLTPYHAISR 164
Query: 85 VRGKMRPGESLLVHAGAGGLGQAAISIALHMGCT 118
V + PG + +V G GGLG I I +
Sbjct: 165 VLPLLGPGSTAVVI-GVGGLGHVGIQILRAVSAA 197
>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG,
PSI, protein structure initiative, joint center for S
genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2
c.2.1.1
Length = 380
Score = 39.5 bits (93), Expect = 8e-05
Identities = 18/68 (26%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Query: 49 TVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAA 108
VL + + +V K L+ + ATAY++ + G+++++ GAG LG
Sbjct: 153 IVLDPETDVLKVSEKDDLDVLAMAMCSGATAYHAFDEYPESFAGKTVVI-QGAGPLGLFG 211
Query: 109 ISIALHMG 116
+ IA +G
Sbjct: 212 VVIARSLG 219
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 38.3 bits (88), Expect = 2e-04
Identities = 18/151 (11%), Positives = 43/151 (28%), Gaps = 43/151 (28%)
Query: 9 PDALPGDLAGQDCVLGLEFSGRDTKGRRVMGL-------VAARSLATTVLADPSFLWEVP 61
D L+ ++ + + R+ + + + + + FL
Sbjct: 39 QDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS-- 96
Query: 62 AKWTLE--EASTIPVVYATAYYSL-----------IVRGK-----------MRPGESLLV 97
E + S + +Y L + R + +RP +++L+
Sbjct: 97 -PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 98 HAGAGGLGQ---AA-----ISIALHMGCTVY 120
G G G+ A + M ++
Sbjct: 156 D-GVLGSGKTWVALDVCLSYKVQCKMDFKIF 185
>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain
alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus
solfataricus}
Length = 344
Score = 36.4 bits (85), Expect = 0.001
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 4/76 (5%)
Query: 45 SLATTVLADPSFLWEVPAKWTLEEASTIPVVYATAYYSL---IVRGKMRPGESLLVHAGA 101
+ +L S + EA+ + T+ ++ + ++V+ G
Sbjct: 121 GFSEYMLVKSSRWLVKLNSLSPVEAAPLADAGTTSMGAIRQALPFISKFAEPVVIVN-GI 179
Query: 102 GGLGQAAISIALHMGC 117
GGL I I +
Sbjct: 180 GGLAVYTIQILKALMK 195
>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle,
zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP:
b.35.1.2 c.2.1.1
Length = 359
Score = 36.1 bits (84), Expect = 0.001
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 78 TAYYSL-IVRGKMRPGESLLVHAGAGGLGQAAISIALHMGC 117
TAY ++ + PG + + G GGLG A+ + M
Sbjct: 172 TAYRAVKKAARTLYPGAYVAIV-GVGGLGHIAVQLLKVMTP 211
>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX,
oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha}
PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*
Length = 340
Score = 35.6 bits (83), Expect = 0.002
Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 6/76 (7%)
Query: 47 ATTVLADPSFLWEVPAKWTLEEASTIPVVYA--TAYYSLIVRGKMRPGESLLVHAGAGGL 104
V+ADP+++ +P K E + P++ A T Y L RPG+ +++ G GGL
Sbjct: 123 GEYVVADPNYVGLLPDKVGFVEIA--PILCAGVTVYKGL-KVTDTRPGQWVVIS-GIGGL 178
Query: 105 GQAAISIALHMGCTVY 120
G A+ A MG V
Sbjct: 179 GHVAVQYARAMGLRVA 194
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 35.2 bits (82), Expect = 0.002
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 5/75 (6%)
Query: 45 SLATTVLADPSFLWEVPAKWTLEEASTI-PVVYATAYYSLIVRGKMRPGESLLVHAGAGG 103
A V+ W P E A+ + P + A ++ + G G+S+L+ GAG
Sbjct: 120 GFAEYVVVPAENAWVNPKDLPFEVAAILEP--FGNAVHT-VYAGSGVSGKSVLI-TGAGP 175
Query: 104 LGQAAISIALHMGCT 118
+G A + G
Sbjct: 176 IGLMAAMVVRASGAG 190
>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing,
cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A
{Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A*
2w4q_A* 1vj1_A 2zb3_A*
Length = 357
Score = 35.3 bits (82), Expect = 0.003
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 78 TAYYSLIVRGKMRPG--ESLLVHAGAGGLGQAAISIALHMGCT 118
T+ + +G + G ++++V AG G A I +GC+
Sbjct: 145 TSLIGIQEKGHITAGSNKTMVVSGAAGACGSVAGQIGHFLGCS 187
>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose
reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2
c.2.1.1
Length = 352
Score = 34.9 bits (81), Expect = 0.003
Identities = 19/77 (24%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
Query: 45 SLATTVLADPSFLWEVPAKWTLEEASTI-PVVYATAYYSLIVRGKMRPGESLLVHAGAGG 103
+LA + F ++P +LEE + + P+ + ++ R ++ G ++LV GAG
Sbjct: 124 NLARYYVHAADFCHKLPDNVSLEEGALLEPL--SVGVHA-CRRAGVQLGTTVLV-IGAGP 179
Query: 104 LGQAAISIALHMGCTVY 120
+G ++ A G V
Sbjct: 180 IGLVSVLAAKAYGAFVV 196
>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer;
2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2
c.2.1.1 PDB: 3pii_A
Length = 339
Score = 34.5 bits (80), Expect = 0.004
Identities = 24/75 (32%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 47 ATTVLADPSFLWEVPAKWTLEEASTIPVVYA--TAYYSLIVRGKMRPGESLLVHAGAGGL 104
A A ++ ++P + EEA+ P+ A T Y +L +PGE + ++ G GGL
Sbjct: 121 AEYCRAAADYVVKIPDNLSFEEAA--PIFCAGVTTYKAL-KVTGAKPGEWVAIY-GIGGL 176
Query: 105 GQAAISIALHMGCTV 119
G A+ A MG V
Sbjct: 177 GHVAVQYAKAMGLNV 191
>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics,
metal-binding, oxidoreductase, PSI-2, protein structure
initiative; 2.09A {Thermotoga maritima}
Length = 404
Score = 34.3 bits (79), Expect = 0.006
Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 47 ATTVLADPSFLWEVPAKWTLEEASTI-PVVYATAYYSLIV-RGKMRPGESLLVHAGAGGL 104
A + S + P + AY ++IV G +RPG+++++ G G +
Sbjct: 169 AKYAWSLRELEGVYEGDRLFLAGSLVEP--TSVAYNAVIVRGGGIRPGDNVVI-LGGGPI 225
Query: 105 GQAAISIALHMGCT 118
G AA++I H G +
Sbjct: 226 GLAAVAILKHAGAS 239
>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii
OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus
horikoshii} PDB: 2dfv_A* 3gfb_A*
Length = 348
Score = 34.1 bits (79), Expect = 0.006
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 6/75 (8%)
Query: 45 SLATTVLADPSFLWEVPAKWTLEEASTI-PVVYATAYYSLIVRGKMRPGESLLVHAGAGG 103
A + +W+ P E A+ P A + V G+S+L+ GAG
Sbjct: 124 VFAEYAVVPAQNIWKNPKSIPPEYATLQEP--LGNAVDT--VLAGPISGKSVLI-TGAGP 178
Query: 104 LGQAAISIALHMGCT 118
LG I++A G
Sbjct: 179 LGLLGIAVAKASGAY 193
>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A
{Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A
1pl6_A* 3qe3_A
Length = 356
Score = 33.3 bits (77), Expect = 0.009
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 46 LATTVLADPSFLWEVPAKWTLEEASTI-PVVYATAYYSLIVRGKMRPGESLLVHAGAGGL 104
L + +F +++P T EE + I P+ + ++ RG + G +LV GAG +
Sbjct: 128 LCRFYKHNAAFCYKLPDNVTFEEGALIEPL--SVGIHA-CRRGGVTLGHKVLV-CGAGPI 183
Query: 105 GQAAISIALHMGCT 118
G + +A MG
Sbjct: 184 GMVTLLVAKAMGAA 197
>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in
PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent,
oxidoreductase; HET: NAP; 3.00A {Saccharomyces
cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A
Length = 360
Score = 32.9 bits (76), Expect = 0.015
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 81 YSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
YS +VR PG+ + + G GG+G I+ MG Y
Sbjct: 169 YSPLVRNGCGPGKKVGI-VGLGGIGSMGTLISKAMGAETY 207
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 33.1 bits (75), Expect = 0.015
Identities = 17/63 (26%), Positives = 22/63 (34%), Gaps = 8/63 (12%)
Query: 53 DPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQ---AAI 109
D +L +P L I V+ Y PGE GA G Q A+
Sbjct: 227 DKDYLLSIPISCPL-----IGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAV 281
Query: 110 SIA 112
+IA
Sbjct: 282 AIA 284
Score = 25.0 bits (54), Expect = 8.9
Identities = 21/133 (15%), Positives = 38/133 (28%), Gaps = 52/133 (39%)
Query: 13 PGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLAD--PSFL-----------W- 58
PG+L + G +G GLV A ++A D SF +
Sbjct: 260 PGELR--SYLKGA--TGH------SQGLVTAVAIAE---TDSWESFFVSVRKAITVLFFI 306
Query: 59 -----------EVPA---KWTLEEASTIPVVYATAYYS--LIVRGKMRPG-ESLLVHAGA 101
+P + +LE +P S L + + + + +
Sbjct: 307 GVRCYEAYPNTSLPPSILEDSLENNEGVP--------SPMLSISNLTQEQVQDYVNKTNS 358
Query: 102 GGLGQAAISIALH 114
+ I+L
Sbjct: 359 HLPAGKQVEISLV 371
>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A
{Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1
Length = 398
Score = 32.6 bits (75), Expect = 0.017
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 75 VYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMG 116
+ T Y+ V + PG ++ V AGAG +G AA + A +G
Sbjct: 170 ILPTGYHG-AVTAGVGPGSTVYV-AGAGPVGLAAAASARLLG 209
>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase;
HET: NAD; 2.27A {Pseudomonas putida}
Length = 398
Score = 32.6 bits (75), Expect = 0.021
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 75 VYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMG 116
+ T ++ V ++PG + + AGAG +G+ A + A +G
Sbjct: 170 ILPTGFHG-CVSAGVKPGSHVYI-AGAGPVGRCAAAGARLLG 209
>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H)
oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}
Length = 348
Score = 32.2 bits (74), Expect = 0.024
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Query: 81 YSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
YS + K+ G + V AG GGLG A+ A+ MG V
Sbjct: 166 YSPLKFSKVTKGTKVGV-AGFGGLGSMAVKYAVAMGAEVS 204
>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal
binding-site; 1.87A {Escherichia coli}
Length = 346
Score = 32.2 bits (74), Expect = 0.025
Identities = 13/75 (17%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 45 SLATTVLADPSFLWEVPAKWTLEEASTI-PVVYATAYYSLIVRGKMRPGESLLVHAGAGG 103
A ++ ++ +P +E+ + I P ++ + +++++ GAG
Sbjct: 116 GFAEYIVVKRKNVFALPTDMPIEDGAFIEP--ITVGLHA-FHLAQGCENKNVII-IGAGT 171
Query: 104 LGQAAISIALHMGCT 118
+G AI A+ +G
Sbjct: 172 IGLLAIQCAVALGAK 186
>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc,
PSI-biology, NEW YORK structura genomics research
consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*
Length = 370
Score = 32.2 bits (74), Expect = 0.026
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 5/75 (6%)
Query: 45 SLATTVLADPSFLWEVPAKWTLEEASTI-PVVYATAYYSLIVRGKMRPGESLLVHAGAGG 103
A VL +E+P + P+ A + + ++ G ++ + G G
Sbjct: 138 GFAEYVLVPRKQAFEIPLTLDPVHGAFCEPL--ACCLHG-VDLSGIKAGSTVAI-LGGGV 193
Query: 104 LGQAAISIALHMGCT 118
+G + +A G T
Sbjct: 194 IGLLTVQLARLAGAT 208
>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK;
oxidoreductase, zinc binding, oxydoreductase,
metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2
c.2.1.1
Length = 369
Score = 31.8 bits (73), Expect = 0.039
Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 81 YSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
YS + + PG+ + V G GGLG I +A MG V
Sbjct: 184 YSPLRHWQAGPGKKVGV-VGIGGLGHMGIKLAHAMGAHVV 222
>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial
alcohol dehydrogenase, domain exchange, chimera,
metal-binding; 1.40A {Thermoanaerobacter brockii} PDB:
2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A*
3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A
Length = 352
Score = 31.8 bits (73), Expect = 0.040
Identities = 15/57 (26%), Positives = 30/57 (52%), Gaps = 2/57 (3%)
Query: 60 VPAKWTLEEASTIPVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHMG 116
+P + LE A IP + T ++ ++ G+++ V G G +G +++ A H+G
Sbjct: 136 LPKEIPLEAAVMIPDMMTTGFHG-AELANIKLGDTVCV-IGIGPVGLMSVAGANHLG 190
>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc
coordination, intramolec disulfide bonds,
oxidoreductase; HET: 8ID; 2.44A {Saccharomyces
cerevisiae}
Length = 347
Score = 31.8 bits (73), Expect = 0.041
Identities = 19/75 (25%), Positives = 29/75 (38%), Gaps = 5/75 (6%)
Query: 47 ATTVLADPSFLWEVPAKWTLEEASTIPVVYA--TAYYSLIVRGKMRPGESLLVHAGAGGL 104
AD +P L + + P++ A T Y + + G + + AGGL
Sbjct: 126 QQYATADAVQAAHIPQGTDLAQVA--PILCAGITVY-KALKSANLMAGHWVAISGAAGGL 182
Query: 105 GQAAISIALHMGCTV 119
G A+ A MG V
Sbjct: 183 GSLAVQYAKAMGYRV 197
>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase,
oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}
Length = 363
Score = 29.1 bits (66), Expect = 0.31
Identities = 16/67 (23%), Positives = 28/67 (41%), Gaps = 12/67 (17%)
Query: 60 VPAKW-------TLEEASTI-PVVYATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISI 111
PA W + E + + P+ + A + R +R G+ +L+ GAG +G +
Sbjct: 143 HPAVWCHKIGNMSYENGAMLEPL--SVALAG-LQRAGVRLGDPVLI-CGAGPIGLITMLC 198
Query: 112 ALHMGCT 118
A G
Sbjct: 199 AKAAGAC 205
>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase,
oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A
{Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*
Length = 366
Score = 27.8 bits (62), Expect = 0.84
Identities = 7/35 (20%), Positives = 11/35 (31%), Gaps = 1/35 (2%)
Query: 86 RGKMRPGESLLVHAGAGGLGQAAISIALHMGCTVY 120
+LV G G +G + G V+
Sbjct: 175 DDGTLNCRKVLV-VGTGPIGVLFTLLFRTYGLEVW 208
>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis,
metal-binding, NADP, oxidoreductase, zinc; 2.0A
{Arabidopsis thaliana} PDB: 2cf6_A*
Length = 357
Score = 27.6 bits (62), Expect = 0.93
Identities = 30/130 (23%), Positives = 47/130 (36%), Gaps = 30/130 (23%)
Query: 13 PGDLAG-----------QDCVLGLE---------FSGRDTKGRRVMGLVAARSLATTVLA 52
GD+ G C LE ++ G+ G A +
Sbjct: 87 VGDIVGVGCLVGCCGGCSPCERDLEQYCPKKIWSYNDVYINGQPTQG-----GFAKATVV 141
Query: 53 DPSFLWEVPAKWTLEEASTIPVVYA--TAYYSLIVRGKMRPGESLLVHAGAGGLGQAAIS 110
F+ ++P +E+A+ P++ A T Y L G +PG + G GG+G +
Sbjct: 142 HQKFVVKIPEGMAVEQAA--PLLCAGVTVYSPLSHFGLKQPGLRGGI-LGLGGVGHMGVK 198
Query: 111 IALHMGCTVY 120
IA MG V
Sbjct: 199 IAKAMGHHVT 208
>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase,
zinc-dependent, plant DE biosynthesis, substrate
inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB:
1yqx_A*
Length = 366
Score = 27.5 bits (62), Expect = 1.1
Identities = 28/130 (21%), Positives = 45/130 (34%), Gaps = 30/130 (23%)
Query: 13 PGDLAG-----------QDCVLGLE---------FSGRDTKGRRVMGLVAARSLATTVLA 52
GD G + C LE ++ G G + ++A
Sbjct: 94 VGDKVGVGCLVGACHSCESCANDLENYCPKMILTYASIYHDGTITYG-----GYSNHMVA 148
Query: 53 DPSFLWEVPAKWTLEEASTIPVVYA--TAYYSLIVRGKMRPGESLLVHAGAGGLGQAAIS 110
+ ++ P L+ + P++ A T Y L G PG+ + + G GGLG A+
Sbjct: 149 NERYIIRFPDNMPLDGGA--PLLCAGITVYSPLKYFGLDEPGKHIGI-VGLGGLGHVAVK 205
Query: 111 IALHMGCTVY 120
A G V
Sbjct: 206 FAKAFGSKVT 215
>1hf2_A MINC, septum site-determining protein MINC; cell division protein,
FTSZ, bacterial cell division, beta helix; 2.2A
{Thermotoga maritima} SCOP: b.80.3.1 c.102.1.1
Length = 210
Score = 26.8 bits (59), Expect = 1.5
Identities = 12/39 (30%), Positives = 18/39 (46%), Gaps = 5/39 (12%)
Query: 77 ATAYYSLIVRGKMRPGESLLVHAGAGGLGQAAISIALHM 115
A S++V GK + + AG GQA + AL +
Sbjct: 132 ILAGGSVVVFGKAQG----NIRAGLNEGGQAVV-AALDL 165
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 26.5 bits (57), Expect = 1.9
Identities = 8/16 (50%), Positives = 9/16 (56%), Gaps = 2/16 (12%)
Query: 3 ASGKL-PPDALPGDLA 17
AS KL D+ P LA
Sbjct: 27 ASLKLYADDSAPA-LA 41
>3n0r_A Response regulator; sigma factor, receiver, two-component SI
transduction, signaling protein; HET: MSE GOL; 1.25A
{Caulobacter vibrioides} PDB: 3t0y_A
Length = 286
Score = 25.9 bits (57), Expect = 3.3
Identities = 5/23 (21%), Positives = 13/23 (56%)
Query: 66 LEEASTIPVVYATAYYSLIVRGK 88
+ +PV++ TA+ ++ G+
Sbjct: 228 ILGRMDVPVIFITAFPERLLTGE 250
>3fh1_A Uncharacterized NTF2-like protein; structural genomics, joint
center for structural genomics, J protein structure
initiative, PSI-2; HET: MSE; 1.60A {Mesorhizobium loti}
Length = 129
Score = 25.4 bits (55), Expect = 3.8
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 3/52 (5%)
Query: 9 PDALPGDLAGQDCVLGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEV 60
P ALP +A ++CV+ E + G R G A L + + P +++
Sbjct: 35 PAALPELIA-EECVI--ENTVPAPDGARHAGRQACVQLWSAIATQPGTRFDL 83
>2r0c_A REBC; flavin adenine dinucleotide, monooxygenase, oxidoreductase;
HET: FAD; 1.80A {Lechevalieria aerocolonigenes} PDB:
2r0g_A* 2r0p_A* 3ept_A*
Length = 549
Score = 25.8 bits (57), Expect = 4.7
Identities = 6/39 (15%), Positives = 13/39 (33%)
Query: 23 LGLEFSGRDTKGRRVMGLVAARSLATTVLADPSFLWEVP 61
LG++ R L A L + + + + +
Sbjct: 202 LGIDAPPRHRTQVFRNILFRAPELRSLLGERAALFFFLM 240
>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET:
NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2
c.2.1.1
Length = 371
Score = 25.2 bits (56), Expect = 6.0
Identities = 10/32 (31%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Query: 87 GKMRPGESLLVHAGAGGLGQAAISIALHMGCT 118
K+ P S + GAG +G +A+ A G +
Sbjct: 186 LKVTPASSFVT-WGAGAVGLSALLAAKVCGAS 216
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic;
photosynthesis, rubisco activase, AAA+ protein; 2.95A
{Nicotiana tabacum} PDB: 3zw6_A
Length = 293
Score = 25.2 bits (55), Expect = 6.9
Identities = 8/42 (19%), Positives = 20/42 (47%)
Query: 51 LADPSFLWEVPAKWTLEEASTIPVVYATAYYSLIVRGKMRPG 92
+AD ++P + +E + +P++ +S + +R G
Sbjct: 135 IADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDG 176
>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343,
PSI-2, structure initiative; HET: MSE NAP; 2.79A
{Bacillus subtilis}
Length = 300
Score = 24.7 bits (54), Expect = 8.3
Identities = 5/21 (23%), Positives = 6/21 (28%)
Query: 100 GAGGLGQAAISIALHMGCTVY 120
G G G +G V
Sbjct: 164 GLGRTGMTIARTFAALGANVK 184
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 25.0 bits (55), Expect = 8.4
Identities = 6/37 (16%), Positives = 13/37 (35%)
Query: 1 MLASGKLPPDALPGDLAGQDCVLGLEFSGRDTKGRRV 37
+ +GK P+ D + + F G + +
Sbjct: 121 KILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFT 157
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.136 0.410
Gapped
Lambda K H
0.267 0.0754 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,900,602
Number of extensions: 106178
Number of successful extensions: 374
Number of sequences better than 10.0: 1
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 96
Length of query: 121
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 39
Effective length of database: 4,412,271
Effective search space: 172078569
Effective search space used: 172078569
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.4 bits)