Query psy3431
Match_columns 549
No_of_seqs 349 out of 2337
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 16:33:18 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3431.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3431hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0100|consensus 100.0 8E-125 2E-129 892.9 50.9 527 2-532 37-647 (663)
2 PTZ00009 heat shock 70 kDa pro 100.0 5E-101 1E-105 835.1 62.0 548 1-549 4-653 (653)
3 KOG0101|consensus 100.0 5.1E-96 1E-100 752.0 42.2 528 1-529 7-615 (620)
4 PRK13411 molecular chaperone D 100.0 3.3E-93 7.1E-98 773.0 59.9 517 2-532 3-605 (653)
5 PTZ00186 heat shock 70 kDa pre 100.0 8.3E-93 1.8E-97 763.6 60.2 515 2-530 28-627 (657)
6 PRK13410 molecular chaperone D 100.0 4.6E-93 9.9E-98 769.3 58.5 514 2-528 3-607 (668)
7 PLN03184 chloroplast Hsp70; Pr 100.0 1.8E-92 3.9E-97 767.5 61.3 518 2-535 40-643 (673)
8 PTZ00400 DnaK-type molecular c 100.0 1.9E-92 4.2E-97 767.1 58.0 513 2-530 42-640 (663)
9 PRK00290 dnaK molecular chaper 100.0 4.8E-91 1E-95 757.4 61.7 511 1-529 1-598 (627)
10 CHL00094 dnaK heat shock prote 100.0 1.4E-89 3E-94 743.4 59.3 511 2-528 3-599 (621)
11 TIGR02350 prok_dnaK chaperone 100.0 1.7E-89 3.7E-94 743.2 59.7 509 2-527 1-594 (595)
12 PRK05183 hscA chaperone protei 100.0 9.5E-89 2.1E-93 733.5 58.8 511 2-528 20-601 (616)
13 TIGR01991 HscA Fe-S protein as 100.0 1.9E-88 4.1E-93 729.8 58.9 509 3-528 1-585 (599)
14 PRK01433 hscA chaperone protei 100.0 3.3E-86 7.1E-91 707.1 58.0 491 2-521 20-572 (595)
15 KOG0102|consensus 100.0 3.5E-88 7.6E-93 665.6 39.3 518 2-532 28-631 (640)
16 PF00012 HSP70: Hsp70 protein; 100.0 1E-84 2.2E-89 713.1 51.4 517 3-528 1-602 (602)
17 COG0443 DnaK Molecular chapero 100.0 3.6E-81 7.9E-86 664.3 50.3 491 2-528 6-578 (579)
18 KOG0103|consensus 100.0 1.1E-81 2.4E-86 638.0 42.2 519 1-529 1-647 (727)
19 KOG0104|consensus 100.0 3E-69 6.5E-74 548.1 42.0 517 2-529 23-738 (902)
20 PRK11678 putative chaperone; P 100.0 7.7E-44 1.7E-48 368.4 24.2 210 2-243 1-268 (450)
21 PRK13928 rod shape-determining 100.0 6E-30 1.3E-34 259.0 21.0 240 4-298 6-324 (336)
22 PRK13929 rod-share determining 100.0 1.2E-29 2.7E-34 255.9 21.5 187 3-243 6-197 (335)
23 TIGR00904 mreB cell shape dete 100.0 1.3E-27 2.8E-32 241.8 23.1 239 4-297 5-327 (333)
24 PRK13927 rod shape-determining 100.0 1.3E-26 2.8E-31 235.0 23.1 240 3-298 7-325 (334)
25 PRK13930 rod shape-determining 99.9 8.2E-26 1.8E-30 229.4 23.4 188 3-244 10-200 (335)
26 PF06723 MreB_Mbl: MreB/Mbl pr 99.9 5.1E-25 1.1E-29 217.0 17.7 238 3-295 3-319 (326)
27 COG1077 MreB Actin-like ATPase 99.9 3.5E-22 7.6E-27 189.0 18.6 199 3-255 8-213 (342)
28 TIGR02529 EutJ ethanolamine ut 99.9 2.9E-22 6.3E-27 191.7 10.8 165 110-293 35-238 (239)
29 PRK15080 ethanolamine utilizat 99.8 6.8E-20 1.5E-24 178.5 17.5 163 114-295 66-267 (267)
30 PRK09472 ftsA cell division pr 99.5 4.9E-12 1.1E-16 131.7 21.3 90 150-248 167-262 (420)
31 TIGR01174 ftsA cell division p 99.3 1.6E-10 3.5E-15 118.9 17.1 83 149-239 157-239 (371)
32 COG4820 EutJ Ethanolamine util 99.2 3.4E-12 7.4E-17 112.5 3.2 108 118-238 75-182 (277)
33 smart00268 ACTIN Actin. ACTIN 99.1 1.1E-09 2.4E-14 112.9 16.7 177 2-241 2-190 (373)
34 cd00012 ACTIN Actin; An ubiqui 99.1 8.6E-10 1.9E-14 113.7 15.6 117 115-243 75-192 (371)
35 PRK13917 plasmid segregation p 99.1 2.4E-09 5.2E-14 108.3 16.1 156 139-300 115-339 (344)
36 COG0849 ftsA Cell division ATP 99.1 3.1E-09 6.7E-14 108.1 15.6 212 3-243 8-250 (418)
37 TIGR03739 PRTRC_D PRTRC system 98.9 9.9E-09 2.2E-13 103.2 12.1 108 135-246 101-219 (320)
38 PTZ00280 Actin-related protein 98.8 3.9E-07 8.5E-12 95.1 19.3 123 115-242 82-208 (414)
39 PF06406 StbA: StbA protein; 98.6 4.7E-08 1E-12 98.1 6.5 73 164-241 140-212 (318)
40 PF00022 Actin: Actin; InterP 98.6 8.9E-07 1.9E-11 92.1 14.7 180 2-242 5-190 (393)
41 PTZ00004 actin-2; Provisional 98.5 3E-06 6.5E-11 87.4 17.0 114 115-242 81-197 (378)
42 PTZ00281 actin; Provisional 98.5 3.6E-06 7.8E-11 86.7 15.7 114 116-241 82-196 (376)
43 PTZ00452 actin; Provisional 98.5 5.5E-06 1.2E-10 85.1 17.0 114 116-241 81-195 (375)
44 PTZ00466 actin-like protein; P 98.4 1.2E-05 2.6E-10 82.8 16.9 114 115-241 87-201 (380)
45 KOG0679|consensus 98.3 2.7E-05 5.8E-10 76.2 15.8 116 115-242 86-202 (426)
46 PRK10719 eutA reactivating fac 98.2 6.6E-06 1.4E-10 84.0 10.4 87 136-232 88-182 (475)
47 TIGR01175 pilM type IV pilus a 98.2 2.5E-05 5.4E-10 79.9 13.5 85 148-239 141-231 (348)
48 PF11104 PilM_2: Type IV pilus 97.7 0.00021 4.5E-09 72.7 10.3 85 149-239 135-223 (340)
49 COG5277 Actin and related prot 97.4 0.0026 5.7E-08 66.2 14.0 100 135-243 105-205 (444)
50 TIGR00241 CoA_E_activ CoA-subs 97.3 0.0018 3.9E-08 62.7 10.6 66 168-240 73-138 (248)
51 PF06277 EutA: Ethanolamine ut 97.1 0.0042 9.1E-08 63.9 11.4 88 138-231 87-178 (473)
52 KOG0797|consensus 97.1 0.0075 1.6E-07 61.5 12.1 148 109-273 195-349 (618)
53 TIGR03192 benz_CoA_bzdQ benzoy 96.8 0.11 2.4E-06 50.7 17.2 33 264-297 255-288 (293)
54 PF07520 SrfB: Virulence facto 96.7 0.017 3.6E-07 64.6 12.7 197 47-244 331-628 (1002)
55 TIGR03286 methan_mark_15 putat 96.7 0.082 1.8E-06 53.8 16.1 32 264-296 371-402 (404)
56 COG1924 Activator of 2-hydroxy 96.5 0.26 5.7E-06 49.2 17.6 33 264-297 358-390 (396)
57 COG0248 GppA Exopolyphosphatas 96.4 0.17 3.8E-06 53.4 17.4 57 153-209 92-148 (492)
58 PRK10854 exopolyphosphatase; P 96.0 0.11 2.4E-06 55.8 13.9 55 154-209 101-156 (513)
59 KOG0676|consensus 95.9 0.058 1.3E-06 54.4 10.3 110 118-241 82-192 (372)
60 PRK11031 guanosine pentaphosph 95.7 0.26 5.6E-06 52.7 14.7 56 152-208 94-150 (496)
61 PF08841 DDR: Diol dehydratase 95.5 0.05 1.1E-06 51.8 7.5 50 160-211 106-155 (332)
62 TIGR03706 exo_poly_only exopol 94.9 0.66 1.4E-05 46.2 13.9 76 152-235 87-164 (300)
63 COG4972 PilM Tfp pilus assembl 94.1 1.6 3.4E-05 43.0 13.8 83 151-239 150-236 (354)
64 TIGR02261 benz_CoA_red_D benzo 93.8 3.2 7E-05 40.1 15.3 32 264-295 227-262 (262)
65 COG4819 EutA Ethanolamine util 93.4 0.2 4.4E-06 48.8 6.5 37 189-231 144-180 (473)
66 smart00842 FtsA Cell division 93.4 0.75 1.6E-05 42.3 10.2 30 150-179 157-186 (187)
67 COG4457 SrfB Uncharacterized p 92.2 1.2 2.6E-05 47.5 10.5 53 110-162 423-489 (1014)
68 COG1548 Predicted transcriptio 92.2 1.1 2.4E-05 42.3 9.2 69 122-208 77-148 (330)
69 PF02541 Ppx-GppA: Ppx/GppA ph 91.9 0.47 1E-05 46.8 7.2 109 117-235 40-151 (285)
70 KOG0681|consensus 89.9 3.4 7.3E-05 43.3 10.9 99 137-242 117-216 (645)
71 PF03652 UPF0081: Uncharacteri 87.4 0.57 1.2E-05 40.5 3.2 22 1-22 1-22 (135)
72 PRK09557 fructokinase; Reviewe 87.1 5 0.00011 39.8 10.3 38 162-200 96-133 (301)
73 PF01968 Hydantoinase_A: Hydan 86.6 0.43 9.3E-06 47.2 2.3 42 165-208 54-95 (290)
74 smart00732 YqgFc Likely ribonu 86.5 0.63 1.4E-05 37.6 2.9 19 1-19 1-19 (99)
75 COG0145 HyuA N-methylhydantoin 83.6 1.4 3.1E-05 48.6 4.7 42 166-208 255-296 (674)
76 PF14450 FtsA: Cell division p 81.1 2.3 5.1E-05 35.8 4.2 52 192-243 1-56 (120)
77 COG5026 Hexokinase [Carbohydra 80.2 13 0.00029 38.1 9.7 18 2-19 76-93 (466)
78 PRK00109 Holliday junction res 78.8 2 4.3E-05 37.3 3.1 21 1-21 4-24 (138)
79 PRK05082 N-acetylmannosamine k 78.7 22 0.00048 35.0 11.0 38 162-201 96-133 (291)
80 KOG1385|consensus 78.2 7.5 0.00016 39.6 7.2 77 109-208 152-231 (453)
81 COG1940 NagC Transcriptional r 77.5 27 0.00058 34.8 11.3 39 162-201 106-144 (314)
82 PF08735 DUF1786: Putative pyr 77.5 30 0.00065 33.2 10.7 73 133-208 111-185 (254)
83 cd06007 R3H_DEXH_helicase R3H 77.4 8.2 0.00018 27.9 5.4 29 138-166 16-44 (59)
84 PRK13310 N-acetyl-D-glucosamin 77.0 29 0.00063 34.4 11.4 40 161-201 95-134 (303)
85 TIGR02259 benz_CoA_red_A benzo 76.9 27 0.00059 35.8 10.7 32 264-295 397-432 (432)
86 PF00349 Hexokinase_1: Hexokin 76.9 6.7 0.00015 36.6 6.2 54 188-243 61-117 (206)
87 COG0816 Predicted endonuclease 76.8 2.4 5.2E-05 36.7 2.9 22 1-22 2-23 (141)
88 PRK09343 prefoldin subunit bet 75.3 34 0.00074 28.8 9.5 50 478-531 64-113 (121)
89 PF00370 FGGY_N: FGGY family o 71.8 3.7 8E-05 39.4 3.3 18 3-20 2-19 (245)
90 cd02640 R3H_NRF R3H domain of 71.6 16 0.00034 26.6 5.6 40 126-166 6-45 (60)
91 PF14450 FtsA: Cell division p 71.6 7.2 0.00016 32.8 4.6 21 3-23 1-21 (120)
92 PRK14101 bifunctional glucokin 71.4 9.5 0.00021 42.4 6.8 20 160-179 103-122 (638)
93 KOG1369|consensus 69.5 14 0.00031 38.7 7.1 64 144-211 186-252 (474)
94 PRK09698 D-allose kinase; Prov 69.1 57 0.0012 32.2 11.3 43 162-207 104-146 (302)
95 PLN02362 hexokinase 68.8 8 0.00017 41.3 5.2 52 152-207 208-261 (509)
96 PRK00039 ruvC Holliday junctio 68.1 3.9 8.5E-05 36.6 2.4 19 1-19 2-20 (164)
97 PLN02596 hexokinase-like 67.9 56 0.0012 34.8 11.2 54 153-210 209-264 (490)
98 PRK13311 N-acetyl-D-glucosamin 67.4 53 0.0012 31.6 10.4 38 162-200 96-133 (256)
99 KOG0680|consensus 66.1 1.3E+02 0.0028 30.0 12.1 100 136-241 93-199 (400)
100 TIGR03123 one_C_unchar_1 proba 66.0 4.2 9.2E-05 40.5 2.3 19 190-208 128-146 (318)
101 COG4012 Uncharacterized protei 65.4 27 0.00058 33.4 7.2 89 143-243 186-277 (342)
102 KOG0677|consensus 64.2 1.4E+02 0.003 28.7 12.2 98 134-242 99-197 (389)
103 cd00529 RuvC_resolvase Hollida 64.0 10 0.00023 33.5 4.3 18 2-19 1-18 (154)
104 PLN02666 5-oxoprolinase 63.8 7.1 0.00015 46.5 3.9 41 168-208 291-332 (1275)
105 cd02641 R3H_Smubp-2_like R3H d 60.3 30 0.00064 25.1 5.3 29 138-166 17-45 (60)
106 PTZ00288 glucokinase 1; Provis 60.2 39 0.00084 35.1 8.2 18 3-20 28-45 (405)
107 cd02646 R3H_G-patch R3H domain 58.5 27 0.00058 25.1 4.8 41 123-166 3-43 (58)
108 PTZ00294 glycerol kinase-like 58.0 9.1 0.0002 41.2 3.3 20 1-20 1-21 (504)
109 TIGR01234 L-ribulokinase L-rib 56.7 10 0.00022 41.2 3.5 17 3-19 3-19 (536)
110 PTZ00107 hexokinase; Provision 56.6 57 0.0012 34.6 8.8 59 149-207 194-254 (464)
111 COG1070 XylB Sugar (pentulose 56.6 11 0.00023 40.7 3.5 20 2-21 5-24 (502)
112 PRK10331 L-fuculokinase; Provi 56.3 8.9 0.00019 40.8 2.9 20 3-22 4-24 (470)
113 PRK13318 pantothenate kinase; 55.5 14 0.0003 35.9 3.8 20 3-22 2-21 (258)
114 TIGR02628 fuculo_kin_coli L-fu 54.8 9.8 0.00021 40.5 2.9 18 3-20 3-20 (465)
115 cd02639 R3H_RRM R3H domain of 54.7 27 0.00059 25.3 4.2 30 138-167 17-46 (60)
116 PRK13321 pantothenate kinase; 54.7 14 0.00031 35.7 3.8 21 2-22 1-21 (256)
117 PRK04123 ribulokinase; Provisi 54.4 12 0.00027 40.7 3.7 17 3-19 5-21 (548)
118 COG2410 Predicted nuclease (RN 53.4 25 0.00055 31.1 4.6 32 1-32 1-33 (178)
119 PF00480 ROK: ROK family; Int 53.0 98 0.0021 27.6 8.9 92 111-207 30-134 (179)
120 PLN02914 hexokinase 52.7 2.7E+02 0.0058 29.8 13.0 65 141-209 197-263 (490)
121 PRK15027 xylulokinase; Provisi 52.6 11 0.00023 40.4 2.7 18 3-20 2-19 (484)
122 PRK10939 autoinducer-2 (AI-2) 52.5 11 0.00024 40.8 2.9 18 3-20 5-22 (520)
123 PLN02405 hexokinase 51.8 60 0.0013 34.7 8.1 55 151-209 207-263 (497)
124 TIGR01314 gntK_FGGY gluconate 51.2 12 0.00025 40.4 2.8 18 3-20 2-19 (505)
125 TIGR00744 ROK_glcA_fam ROK fam 51.0 45 0.00097 33.2 6.9 94 112-207 32-140 (318)
126 PF13941 MutL: MutL protein 50.8 13 0.00027 39.1 2.8 25 3-27 2-28 (457)
127 KOG4001|consensus 50.6 1.1E+02 0.0023 28.0 8.1 49 450-499 194-242 (259)
128 COG1382 GimC Prefoldin, chaper 50.3 1.5E+02 0.0033 24.8 10.5 49 480-532 65-113 (119)
129 PLN02295 glycerol kinase 49.6 13 0.00028 40.2 2.8 18 3-20 2-19 (512)
130 PF15290 Syntaphilin: Golgi-lo 49.5 80 0.0017 30.5 7.5 25 447-471 81-105 (305)
131 TIGR01315 5C_CHO_kinase FGGY-f 49.5 14 0.00031 40.1 3.2 17 3-19 2-18 (541)
132 PF13941 MutL: MutL protein 49.0 8.2 0.00018 40.5 1.2 41 167-208 226-266 (457)
133 TIGR02259 benz_CoA_red_A benzo 48.6 15 0.00034 37.5 2.9 20 3-22 4-23 (432)
134 PF08006 DUF1700: Protein of u 48.2 55 0.0012 29.7 6.4 57 461-524 4-62 (181)
135 TIGR01311 glycerol_kin glycero 47.5 16 0.00034 39.2 3.1 18 3-20 3-20 (493)
136 COG4296 Uncharacterized protei 47.3 48 0.001 28.1 5.1 22 492-513 90-112 (156)
137 PRK13317 pantothenate kinase; 47.3 18 0.00038 35.5 3.1 20 2-21 3-22 (277)
138 PRK00047 glpK glycerol kinase; 46.9 16 0.00035 39.2 3.1 18 3-20 7-24 (498)
139 PLN02939 transferase, transfer 46.3 1.2E+02 0.0026 35.1 9.7 71 428-498 237-310 (977)
140 TIGR00250 RNAse_H_YqgF RNAse H 45.0 14 0.0003 31.7 1.8 17 4-20 1-17 (130)
141 PRK13331 pantothenate kinase; 44.2 28 0.00061 33.5 3.9 22 1-22 7-28 (251)
142 PF02075 RuvC: Crossover junct 44.1 41 0.00088 29.5 4.6 17 3-19 1-17 (149)
143 PF04848 Pox_A22: Poxvirus A22 43.0 39 0.00085 29.4 4.2 20 1-20 1-20 (143)
144 PRK13320 pantothenate kinase; 41.0 32 0.00069 33.1 3.7 22 1-22 2-23 (244)
145 KOG0103|consensus 39.0 86 0.0019 34.4 6.8 63 455-525 652-725 (727)
146 COG5026 Hexokinase [Carbohydra 38.4 33 0.00071 35.4 3.4 31 188-218 73-103 (466)
147 PRK00292 glk glucokinase; Prov 37.5 32 0.00068 34.4 3.3 42 160-201 88-139 (316)
148 PF00349 Hexokinase_1: Hexokin 36.7 34 0.00075 31.9 3.2 33 150-182 169-204 (206)
149 cd00529 RuvC_resolvase Hollida 36.3 2.4E+02 0.0053 24.7 8.4 30 191-221 1-30 (154)
150 PRK13326 pantothenate kinase; 35.8 41 0.00089 32.7 3.7 21 2-22 7-27 (262)
151 PF05957 DUF883: Bacterial pro 34.4 2.3E+02 0.0051 22.4 8.1 67 431-501 5-73 (94)
152 PF14574 DUF4445: Domain of un 34.2 47 0.001 34.5 4.0 44 3-56 3-46 (412)
153 PLN02362 hexokinase 34.0 60 0.0013 34.8 4.8 25 188-212 93-117 (509)
154 PRK00039 ruvC Holliday junctio 34.0 3.4E+02 0.0074 24.2 9.8 31 190-221 2-32 (164)
155 PLN02669 xylulokinase 33.7 33 0.00072 37.4 2.9 17 3-19 10-26 (556)
156 PLN00130 succinate dehydrogena 33.1 5.6 0.00012 35.3 -2.5 19 3-21 59-77 (213)
157 PF02075 RuvC: Crossover junct 32.9 2.6E+02 0.0057 24.4 8.0 44 192-236 1-44 (149)
158 KOG0104|consensus 32.5 3.9E+02 0.0084 30.0 10.3 53 477-529 774-838 (902)
159 PF01150 GDA1_CD39: GDA1/CD39 31.9 49 0.0011 34.8 3.8 60 149-208 103-182 (434)
160 PF03646 FlaG: FlaG protein; 31.9 1E+02 0.0022 25.1 4.9 45 392-444 55-100 (107)
161 PF01920 Prefoldin_2: Prefoldi 31.7 2.7E+02 0.0058 22.2 9.6 50 478-531 55-104 (106)
162 TIGR02338 gimC_beta prefoldin, 31.7 2.9E+02 0.0063 22.6 9.7 47 480-530 62-108 (110)
163 PRK10972 Z-ring-associated pro 31.2 3E+02 0.0066 22.7 9.5 68 453-525 27-96 (109)
164 PHA02557 22 prohead core prote 30.9 4.5E+02 0.0097 25.4 9.4 85 428-521 135-221 (271)
165 PF15188 CCDC-167: Coiled-coil 30.9 2.4E+02 0.0052 22.1 6.3 34 476-517 31-64 (85)
166 COG4012 Uncharacterized protei 30.9 96 0.0021 29.8 5.0 50 191-241 2-73 (342)
167 PTZ00107 hexokinase; Provision 30.5 1.6E+02 0.0034 31.3 7.2 28 188-215 72-99 (464)
168 KOG2196|consensus 30.2 4.5E+02 0.0098 25.0 9.1 38 480-521 214-251 (254)
169 KOG0678|consensus 29.5 3.9E+02 0.0084 26.8 8.9 99 137-240 107-208 (415)
170 PF10168 Nup88: Nuclear pore c 29.5 7E+02 0.015 28.2 12.3 10 486-495 612-621 (717)
171 COG1521 Pantothenate kinase ty 29.2 57 0.0012 31.4 3.3 22 2-23 1-22 (251)
172 PF00815 Histidinol_dh: Histid 29.2 94 0.002 32.2 5.1 74 135-208 136-227 (412)
173 PLN00078 photosystem I reactio 28.9 2.6E+02 0.0056 22.6 6.3 14 487-500 108-121 (122)
174 PRK13324 pantothenate kinase; 28.6 67 0.0015 31.1 3.8 20 3-22 2-21 (258)
175 TIGR03545 conserved hypothetic 28.3 3.6E+02 0.0079 29.4 9.6 101 429-531 162-272 (555)
176 PLN02914 hexokinase 28.2 1.5E+02 0.0032 31.7 6.5 25 188-212 93-117 (490)
177 smart00787 Spc7 Spc7 kinetocho 28.1 6.2E+02 0.013 25.3 10.9 83 428-518 201-286 (312)
178 PF11593 Med3: Mediator comple 27.8 60 0.0013 32.6 3.3 38 490-528 10-47 (379)
179 KOG2517|consensus 27.8 51 0.0011 35.1 2.9 17 3-19 8-24 (516)
180 KOG1029|consensus 27.8 3.3E+02 0.0071 30.5 8.8 44 480-523 562-605 (1118)
181 PF02782 FGGY_C: FGGY family o 27.8 38 0.00083 30.9 1.9 32 264-297 165-196 (198)
182 TIGR00555 panK_eukar pantothen 27.6 78 0.0017 31.0 4.0 26 2-27 1-27 (279)
183 PLN02596 hexokinase-like 27.2 1.8E+02 0.0038 31.2 6.8 25 188-212 94-118 (490)
184 COG2069 CdhD CO dehydrogenase/ 27.1 1.3E+02 0.0028 29.4 5.2 47 160-206 273-329 (403)
185 PRK13329 pantothenate kinase; 26.2 4.2E+02 0.0092 25.4 8.8 119 94-228 7-144 (249)
186 TIGR01319 glmL_fam conserved h 26.1 47 0.001 34.8 2.3 19 190-208 249-267 (463)
187 TIGR02627 rhamnulo_kin rhamnul 25.9 34 0.00075 36.2 1.4 16 4-19 1-16 (454)
188 KOG0994|consensus 25.5 5.6E+02 0.012 30.4 10.3 18 456-473 1469-1486(1758)
189 COG5185 HEC1 Protein involved 25.3 7.5E+02 0.016 26.1 10.4 45 431-475 281-329 (622)
190 KOG1029|consensus 25.0 4.2E+02 0.0092 29.7 9.0 13 331-343 260-272 (1118)
191 PF01548 DEDD_Tnp_IS110: Trans 25.0 1.1E+02 0.0024 26.2 4.3 20 3-22 1-20 (144)
192 PF14085 DUF4265: Domain of un 24.9 3.3E+02 0.0071 22.7 6.9 69 91-164 46-114 (117)
193 PF03484 B5: tRNA synthetase B 24.4 2.2E+02 0.0048 21.1 5.2 58 64-122 8-66 (70)
194 TIGR00228 ruvC crossover junct 24.2 4.6E+02 0.01 23.2 7.8 45 192-238 1-45 (156)
195 PRK00976 hypothetical protein; 23.6 93 0.002 31.2 3.8 22 1-22 1-22 (326)
196 PF00005 ABC_tran: ABC transpo 23.3 88 0.0019 26.4 3.3 31 145-175 107-137 (137)
197 TIGR00671 baf pantothenate kin 23.3 87 0.0019 30.0 3.5 19 4-22 2-20 (243)
198 PF07865 DUF1652: Protein of u 23.2 2.9E+02 0.0062 20.7 5.4 50 392-442 15-66 (69)
199 COG4020 Uncharacterized protei 23.1 65 0.0014 30.7 2.4 22 1-22 3-24 (332)
200 COG1940 NagC Transcriptional r 23.1 3.1E+02 0.0066 27.1 7.6 106 188-296 4-128 (314)
201 PF11314 DUF3117: Protein of u 22.9 34 0.00073 23.3 0.4 23 273-295 27-49 (51)
202 PF14628 DUF4454: Domain of un 22.9 1.1E+02 0.0024 27.8 3.7 59 138-200 53-111 (216)
203 KOG3133|consensus 22.9 3.4E+02 0.0073 26.2 7.0 43 484-526 163-205 (267)
204 PF09059 TyeA: TyeA; InterPro 22.7 1.1E+02 0.0024 24.1 3.3 37 116-162 40-76 (87)
205 PRK10404 hypothetical protein; 21.9 4.4E+02 0.0095 21.4 8.4 67 431-501 12-80 (101)
206 TIGR01312 XylB D-xylulose kina 21.7 50 0.0011 35.1 1.7 17 4-20 1-17 (481)
207 PF10168 Nup88: Nuclear pore c 21.5 6.6E+02 0.014 28.4 10.3 69 426-495 628-699 (717)
208 PRK00877 hisD bifunctional his 21.5 91 0.002 32.4 3.3 74 135-209 150-241 (425)
209 KOG4403|consensus 21.5 7.3E+02 0.016 25.8 9.4 19 482-500 310-328 (575)
210 COG3894 Uncharacterized metal- 21.1 1.8E+02 0.0039 30.8 5.2 48 190-237 164-211 (614)
211 PRK12408 glucokinase; Provisio 20.8 65 0.0014 32.6 2.2 18 3-20 18-35 (336)
212 PF03309 Pan_kinase: Type III 20.8 1.1E+02 0.0025 28.2 3.7 21 3-23 1-21 (206)
213 COG4598 HisP ABC-type histidin 20.7 99 0.0021 28.2 2.9 34 142-177 148-183 (256)
214 PLN02405 hexokinase 20.5 3E+02 0.0066 29.5 7.1 24 188-211 93-116 (497)
215 COG1334 FlaG Uncharacterized f 20.4 2.9E+02 0.0062 23.2 5.4 42 393-442 68-110 (120)
216 smart00732 YqgFc Likely ribonu 20.2 2.4E+02 0.0053 22.0 5.1 20 191-210 2-21 (99)
217 PF09457 RBD-FIP: FIP domain ; 20.1 3.1E+02 0.0067 18.9 5.2 23 450-472 16-38 (48)
218 PRK09604 UGMP family protein; 20.0 8.9E+02 0.019 24.3 13.1 21 1-21 1-21 (332)
219 KOG2517|consensus 20.0 1.1E+02 0.0023 32.8 3.5 35 264-300 430-464 (516)
No 1
>KOG0100|consensus
Probab=100.00 E-value=8.1e-125 Score=892.89 Aligned_cols=527 Identities=63% Similarity=1.018 Sum_probs=510.5
Q ss_pred CEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCCceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHHH
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKIQ 81 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 81 (549)
+|||||||||+|||+++++|+++||.|++|+|.+||+|+|.+++|++|++|++++..||+|++++.|||+|+.++++.+|
T Consensus 37 tvigIdLGTTYsCVgV~kNgrvEIiANdQGNRItPSyVaFt~derLiGdAAKNQ~~~NPenTiFD~KRLIGr~~~d~~vq 116 (663)
T KOG0100|consen 37 TVIGIDLGTTYSCVGVYKNGRVEIIANDQGNRITPSYVAFTDDERLIGDAAKNQLTSNPENTIFDAKRLIGRKFNDKSVQ 116 (663)
T ss_pred eEEEEecCCceeeEEEEeCCeEEEEecCCCCccccceeeeccchhhhhhHhhcccccCcccceechHHHhCcccCChhhh
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCeEEeecCCCceEEEEEc-CceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHH
Q psy3431 82 QDMKHWPFTVVNDRSKPKIQVEFK-GERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA 160 (549)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~ 160 (549)
.+++.|||++++.++.|.+.|... |+.+.++|+++++|+|.++++.|+.|+|.++.++|+||||||++.||+++++|..
T Consensus 117 ~Dik~~Pfkvv~k~~kp~i~v~v~~g~~K~FtPeEiSaMiL~KMKe~AEayLGkkv~~AVvTvPAYFNDAQrQATKDAGt 196 (663)
T KOG0100|consen 117 KDIKFLPFKVVNKDGKPYIQVKVGGGETKVFTPEEISAMILTKMKETAEAYLGKKVTHAVVTVPAYFNDAQRQATKDAGT 196 (663)
T ss_pred hhhhcCceEEEcCCCCccEEEEccCCcccccCHHHHHHHHHHHHHHHHHHHhCCcccceEEecchhcchHHHhhhcccce
Confidence 999999999999999999999987 6689999999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHH
Q psy3431 161 IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 240 (549)
Q Consensus 161 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~ 240 (549)
+|||+++++|+||+|||++||+++. ..+.++||||+||||||||++.+++| .|+|+++.||.+|||.+||+++++|+.
T Consensus 197 IAgLnV~RIiNePTaAAIAYGLDKk-~gEknilVfDLGGGTFDVSlLtIdnG-VFeVlaTnGDThLGGEDFD~rvm~~fi 274 (663)
T KOG0100|consen 197 IAGLNVVRIINEPTAAAIAYGLDKK-DGEKNILVFDLGGGTFDVSLLTIDNG-VFEVLATNGDTHLGGEDFDQRVMEYFI 274 (663)
T ss_pred eccceEEEeecCccHHHHHhccccc-CCcceEEEEEcCCceEEEEEEEEcCc-eEEEEecCCCcccCccchHHHHHHHHH
Confidence 9999999999999999999999976 46789999999999999999999999 999999999999999999999999999
Q ss_pred HHHHhccc--------------cccccCC---------------------------------------------------
Q psy3431 241 EEFKRKCR--------------SASDVGD--------------------------------------------------- 255 (549)
Q Consensus 241 ~~~~~~~~--------------~~~e~~K--------------------------------------------------- 255 (549)
+.|+++++ ++||++|
T Consensus 275 klykkK~gkDv~kdnkA~~KLrRe~EkAKRaLSsqhq~riEIeS~fdG~DfSEtLtRAkFEElNmDLFr~TlkPv~kvl~ 354 (663)
T KOG0100|consen 275 KLYKKKHGKDVRKDNKAVQKLRREVEKAKRALSSQHQVRIEIESLFDGVDFSETLTRAKFEELNMDLFRKTLKPVQKVLE 354 (663)
T ss_pred HHHhhhcCCccchhhHHHHHHHHHHHHHHhhhccccceEEeeeeccccccccchhhhhHHHHhhhHHHHHhhHHHHHHHh
Confidence 99999887 6788877
Q ss_pred ----CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEeccccce
Q psy3431 256 ----HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLG 320 (549)
Q Consensus 256 ----~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~~~~ig 320 (549)
.+++|++| ||++|+++|+|+++.+.+|||||||+|||.+|..||+ .....++++.|++|+++|
T Consensus 355 Ds~lkKsdideiVLVGGsTrIPKvQqllk~fF~GKepskGinPdEAVAYGAAVQaGvlsG--ee~t~divLLDv~pLtlG 432 (663)
T KOG0100|consen 355 DSDLKKSDIDEIVLVGGSTRIPKVQQLLKDFFNGKEPSKGINPDEAVAYGAAVQAGVLSG--EEDTGDIVLLDVNPLTLG 432 (663)
T ss_pred hcCcccccCceEEEecCcccChhHHHHHHHHhCCCCccCCCChHHHHHhhhhhhhccccc--ccCcCcEEEEeeccccce
Confidence 45667766 9999999999999999999999999999999999999 567889999999999999
Q ss_pred EEeeCCeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEEEEeCC
Q psy3431 321 IETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDA 400 (549)
Q Consensus 321 i~~~~~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~~~~d~ 400 (549)
|++.+|.|..|||||+.||.+++..|++..|+|+.+.|.+|+|++++.++|+.||+|.+.||||+|+|.|+|+|+|++|.
T Consensus 433 IETvGGVMTklI~RNTviPTkKSQvFsTa~DnQ~tV~I~vyEGER~mtkdn~lLGkFdltGipPAPRGvpqIEVtFevDa 512 (663)
T KOG0100|consen 433 IETVGGVMTKLIPRNTVIPTKKSQVFSTAQDNQPTVTIQVYEGERPMTKDNHLLGKFDLTGIPPAPRGVPQIEVTFEVDA 512 (663)
T ss_pred eeeecceeeccccCCcccCccccceeeecccCCceEEEEEeeccccccccccccccccccCCCCCCCCCccEEEEEEEcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhcc---Cc
Q psy3431 401 NGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAG---NK 477 (549)
Q Consensus 401 ~g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~---~~ 477 (549)
||+|+|++.++.||++.+++|+|+..+|++|+|++|+.+.++|.++|+..+++.++||.||+|.|.+++.+.+.+ ..
T Consensus 513 ngiL~VsAeDKgtg~~~kitItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~K 592 (663)
T KOG0100|consen 513 NGILQVSAEDKGTGKKEKITITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGK 592 (663)
T ss_pred CceEEEEeeccCCCCcceEEEecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998765 78
Q ss_pred cChhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy3431 478 LTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGG 532 (549)
Q Consensus 478 ~~~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~ 532 (549)
+++++++.+...+++..+||++|++|+.++|++++++|+.+++||.++++..+|+
T Consensus 593 l~~edKe~~e~av~e~~eWL~~n~~a~~Ee~~ek~kele~vv~PiisklY~~ag~ 647 (663)
T KOG0100|consen 593 LSDEDKETIEDAVEEALEWLESNQDASKEEFKEKKKELEAVVQPIISKLYGGAGG 647 (663)
T ss_pred CChhHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHHHHHHHhhhcCC
Confidence 9999999999999999999999999999999999999999999999999987764
No 2
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=100.00 E-value=5e-101 Score=835.12 Aligned_cols=548 Identities=70% Similarity=1.082 Sum_probs=508.1
Q ss_pred CCEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCCceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHH
Q psy3431 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKI 80 (549)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (549)
+++||||||||||+||++++|.+++|+|..|+|.+||+|+|.++++++|..|+.++.++|.++++++||+||+.++++.+
T Consensus 4 ~~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 83 (653)
T PTZ00009 4 GPAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPENTVFDAKRLIGRKFDDSVV 83 (653)
T ss_pred ccEEEEEeCcccEEEEEEeCCceEEEECCCCCccCCcEEEECCCCEEEcHHHHHhhhhCcccEEhhhHHHhCCCCCchhH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH
Q psy3431 81 QQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (549)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa 159 (549)
+...+.|||.+.. .++.+.+.+.+.++...++|++|++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~Aa 163 (653)
T PTZ00009 84 QSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMVLQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAG 163 (653)
T ss_pred hhhhhcCceEEEEcCCCceEEEEEeCCceEEECHHHHHHHHHHHHHHHHHHHhCCCcceeEEEeCCCCCHHHHHHHHHHH
Confidence 9999999999875 677888888888877899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHH
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 239 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l 239 (549)
++|||++++||+||+|||++|++.+....+.++||||+||||||+||+++.++ .++++++.||.++||.+||.+|++|+
T Consensus 164 ~~AGl~v~~li~EptAAAl~y~~~~~~~~~~~vlv~D~GggT~dvsv~~~~~~-~~~v~a~~gd~~lGG~d~D~~l~~~~ 242 (653)
T PTZ00009 164 TIAGLNVLRIINEPTAAAIAYGLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGGEDFDNRLVEFC 242 (653)
T ss_pred HHcCCceeEEecchHHHHHHHhhhccCCCCCEEEEEECCCCeEEEEEEEEeCC-eEEEEEecCCCCCChHHHHHHHHHHH
Confidence 99999999999999999999998765445788999999999999999999988 99999999999999999999999999
Q ss_pred HHHHHhccc---------------cccccCC-------------------------------------------------
Q psy3431 240 AEEFKRKCR---------------SASDVGD------------------------------------------------- 255 (549)
Q Consensus 240 ~~~~~~~~~---------------~~~e~~K------------------------------------------------- 255 (549)
.++|+.++. .+||++|
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~L~~~aEkaK~~LS~~~~~~i~i~~~~~~~d~~~~itR~~fe~l~~~l~~~~~~~i~~~ 322 (653)
T PTZ00009 243 VQDFKRKNRGKDLSSNQRALRRLRTQCERAKRTLSSSTQATIEIDSLFEGIDYNVTISRARFEELCGDYFRNTLQPVEKV 322 (653)
T ss_pred HHHHHHhccCCCCccCHHHHHHHHHHHHHHHHhCCCCceEEEEEEeccCCceEEEEECHHHHHHHHHHHHHHHHHHHHHH
Confidence 999976542 5688888
Q ss_pred ------CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEecccc
Q psy3431 256 ------HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLS 318 (549)
Q Consensus 256 ------~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~~~~ 318 (549)
++.+|+.| ||++|+++|++..+..++|||+|||+|||++|+++++...++++++.+.|++|++
T Consensus 323 L~~a~~~~~~i~~ViLvGGssriP~v~~~i~~~f~~~~~~~~~npdeaVA~GAa~~aa~ls~~~~~~~~~~~~~dv~p~s 402 (653)
T PTZ00009 323 LKDAGMDKRSVHEVVLVGGSTRIPKVQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLS 402 (653)
T ss_pred HHHcCCCHHHCcEEEEECCCCCChhHHHHHHHHhCCCCCCCCCCcchHHhhhhhhhHHHhcCCccccccceEEEeecccc
Confidence 22233333 9999999998778889999999999999999999998555778899999999999
Q ss_pred ceEEeeCCeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEEEEe
Q psy3431 319 LGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDL 398 (549)
Q Consensus 319 igi~~~~~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~~~~ 398 (549)
||++..++.+.+|||+|++||++++.+|++..++|+.+.|+||||++..+.+|..||+|.|.++|+.++|.++|+|+|++
T Consensus 403 lgi~~~~~~~~~ii~~~t~iP~~~~~~f~t~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~i 482 (653)
T PTZ00009 403 LGLETAGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIPPAPRGVPQIEVTFDI 482 (653)
T ss_pred cCccccCCceEEEEeCCCcCCccceeEeEeecCCCceEEEEEEecccccCCCCceEEEEEEcCCCCCCCCCceEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998899999999
Q ss_pred CCCccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhc-c-C
Q psy3431 399 DANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDA-G-N 476 (549)
Q Consensus 399 d~~g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~-~-~ 476 (549)
|.||+|+|++.+..|++...+++.....+|++++++++++.+.++..+|+..+++.+++|+||+|||++|++|++. . .
T Consensus 483 d~~Gil~v~~~~~~t~~~~~~~i~~~~~~ls~~~i~~~~~~~~~~~~~d~~~~~~~eakN~lEs~Iy~~r~~L~~~~~~~ 562 (653)
T PTZ00009 483 DANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKYKAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKG 562 (653)
T ss_pred CCCCeEEEEEecccCCceeeEEEeeccccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhc
Confidence 9999999999999999999998887667799999999999999999999999999999999999999999999753 3 7
Q ss_pred ccChhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCC------------------
Q psy3431 477 KLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDM------------------ 538 (549)
Q Consensus 477 ~~~~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~~~~~~~------------------ 538 (549)
++++++++.+.+.++++++||+++++++.++|++|+++|++.++|+..|++.++|++|.+||
T Consensus 563 ~~t~ee~~~l~~~l~~~~~wL~~~~~~~~~~~~~kl~eL~~~~~pi~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 642 (653)
T PTZ00009 563 KLSDSDKATIEKAIDEALEWLEKNQLAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAGPAGAG 642 (653)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCCCCCCCCCCCCCCCCCCCC
Confidence 89999999999999999999998888999999999999999999999999888777664444
Q ss_pred CCCCCCCCCCC
Q psy3431 539 PRGGPTVEEVD 549 (549)
Q Consensus 539 ~~~~~~~~~~~ 549 (549)
+++||+|||||
T Consensus 643 ~~~~~~~~~~~ 653 (653)
T PTZ00009 643 ASSGPTVEEVD 653 (653)
T ss_pred CCCCCccccCC
Confidence 13599999998
No 3
>KOG0101|consensus
Probab=100.00 E-value=5.1e-96 Score=751.99 Aligned_cols=528 Identities=71% Similarity=1.098 Sum_probs=506.9
Q ss_pred CCEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCCceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHH
Q psy3431 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKI 80 (549)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (549)
|.++|||||||++|++++.+|.++++.|++|+|.+||+|+|.++++++|..|..+..++|.++++++||++|+.++++.+
T Consensus 7 ~~aiGIdlGtT~s~v~v~~~~~v~iian~~g~rttPs~vaf~~~e~~vg~~a~~qv~~np~ntv~~~krliGr~f~d~~v 86 (620)
T KOG0101|consen 7 SVAIGIDLGTTYSCVGVYQSGKVEIIANDQGNRTTPSVVAFTDTERLIGDAAKNQVARNPDNTVFDAKRLIGRFFDDPEV 86 (620)
T ss_pred cceeeEeccCccceeeeEcCCcceeeeccccCccccceeeecccccchhhhhhhhhhcCCcceeeehhhhcCccccchhh
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH
Q psy3431 81 QQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (549)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa 159 (549)
+..+++|||.+.. .++.+.+.+.+.++.+.++|+++.++.|.++++.|+.++|..+.++|+|||+||++.||+++.+|+
T Consensus 87 ~~~~k~~pf~V~~~~~~~~~i~~~~~~~~~~f~peeiss~~L~klke~Ae~~Lg~~v~~aviTVPa~F~~~Qr~at~~A~ 166 (620)
T KOG0101|consen 87 QSDMKLWPFKVISDQGGKPKIQVTYKGETKSFNPEEISSMVLTKLKETAEAYLGKTVKKAVVTVPAYFNDSQRAATKDAA 166 (620)
T ss_pred HhHhhcCCcccccccCCcceEEecccccceeeeeeeeeehhccccHHHHHHHhcCceeeEEEEecCCcCHHHHHHHHHHH
Confidence 9999999999995 566899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHH
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 239 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l 239 (549)
.+|||+++++|+||+|||++|++.+......+++|+|+||||||+|++.+.+| .+.++++.+|.++||++||+.|++|+
T Consensus 167 ~iaGl~vlrii~EPtAaalAygl~k~~~~~~~VlI~DlGggtfdvs~l~i~gG-~~~vkat~gd~~lGGedf~~~l~~h~ 245 (620)
T KOG0101|consen 167 LIAGLNVLRIINEPTAAALAYGLDKKVLGERNVLIFDLGGGTFDVSVLSLEGG-IFEVKATAGDTHLGGEDFDNKLVNHF 245 (620)
T ss_pred HhcCCceeeeecchHHHHHHhhccccccceeeEEEEEcCCCceeeeeEEeccc-hhhhhhhcccccccchhhhHHHHHHH
Confidence 99999999999999999999998887667889999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHhccc--------------cccccCC--------------------------------------------------
Q psy3431 240 AEEFKRKCR--------------SASDVGD-------------------------------------------------- 255 (549)
Q Consensus 240 ~~~~~~~~~--------------~~~e~~K-------------------------------------------------- 255 (549)
..+|+++++ .+||++|
T Consensus 246 ~~ef~~k~~~d~~~n~r~l~rLR~a~E~aKr~LS~~~~~~i~vdsL~~g~d~~~~itrarfe~l~~dlf~~~~~~v~~~L 325 (620)
T KOG0101|consen 246 AAEFKRKAGKDIGGNARALRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEELNADLFRSTLEPVEKAL 325 (620)
T ss_pred HHHHHHhhccccccchHHHHHHHHHHHHHHhhhcccccceeccchhhccccccceeehhhhhhhhhHHHHHHHHHHHHHH
Confidence 999999887 6788888
Q ss_pred -----CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEeccccc
Q psy3431 256 -----HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSL 319 (549)
Q Consensus 256 -----~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~~~~i 319 (549)
.+.+|++| +|.+++++|+++.+..++||||+||+|||++||.+++.......++.+.|+.|.++
T Consensus 326 ~da~~dk~~i~~vvlVGGstriPk~~~ll~d~f~~k~~~~sinpDeavA~GAavqaa~~~g~~~~~~~~l~lid~~pl~~ 405 (620)
T KOG0101|consen 326 KDAKLDKSDIDEVVLVGGSTRIPKVQKLLEDFFNGKELNKSINPDEAVAYGAAVQAAILSGDKSLNIQDLLLIDVAPLSL 405 (620)
T ss_pred HhhccCccCCceeEEecCcccchHHHHHHHHHhcccccccCCCHHHHHHhhHHHHhhhccCCccccccceeeeecccccc
Confidence 34445554 99999999999999999999999999999999999997777778999999999999
Q ss_pred eEEeeCCeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEEEEeC
Q psy3431 320 GIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLD 399 (549)
Q Consensus 320 gi~~~~~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~~~~d 399 (549)
||+..++.|.++|++|+.+|++++.+|+++.|||+.+.|.||+|++..+++|..+|.|.|.||||+|+|+|.|+++|.+|
T Consensus 406 gve~a~~~~~~~i~~~t~~P~~k~~~ftt~~dnQp~V~I~VyEger~~~kdn~~lg~feL~gippaprgvp~IevtfdiD 485 (620)
T KOG0101|consen 406 GVETAGGVFTVLIPRNTSIPTKKTQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDID 485 (620)
T ss_pred cccccCCcceeeeecccccceeeeeeeeeecCCCCceeEEEEeccccccccccccceeeecCCCccccCCcceeEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhccCccC
Q psy3431 400 ANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLT 479 (549)
Q Consensus 400 ~~g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~ 479 (549)
.||+|.|++.++.||+...++|++....||+++|++|....+++..+|...+++.+++|.||+|+|.++..+++....++
T Consensus 486 ~ngiL~Vta~d~stgK~~~i~i~n~~grls~~~Ierm~~ea~~~~~~d~~~~~~v~~~~~le~~~f~~~~~~~~~~~~i~ 565 (620)
T KOG0101|consen 486 ANGILNVTAVDKSTGKENKITITNDKGRLSKEEIERMVQEAEKYKAEDEKQKDKVAAKNSLESYAFNMKATVEDEKGKIN 565 (620)
T ss_pred CCcEEEEeeccccCCccceEEEecccceeehhhhhhhhhhhhhccccCHHHHHHHHHHhhHHHHHHhhhhhhhhhccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999987657899
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3431 480 ESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGG 529 (549)
Q Consensus 480 ~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~ 529 (549)
++++.++.++++++..||+.+..+.+++|++|.++|+..+.||+.+++.+
T Consensus 566 ~~~~~~~~~~~~~~i~wl~~~~~~~~~e~e~k~~el~~~~~p~~~~~~~~ 615 (620)
T KOG0101|consen 566 EEDKQKILDKCNEVINWLDKNQLAEKEEFEHKQKELELVCNPIISKLYQG 615 (620)
T ss_pred hhhhhhHHHHHHHHHHHhhhcccccccHHHHHHHHHHhhccHHHHhhhcc
Confidence 99999999999999999999988889999999999999999999998775
No 4
>PRK13411 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=3.3e-93 Score=772.95 Aligned_cols=517 Identities=50% Similarity=0.834 Sum_probs=472.3
Q ss_pred CEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCC-ceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHH
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKI 80 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (549)
.+||||||||||+||++++|.+.+|+|..|+|.+||+|+|.++ ++++|..|+.++.++|.++++++|||||+.++++.
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~- 81 (653)
T PRK13411 3 KVIGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAENTVYSIKRFIGRRWDDTE- 81 (653)
T ss_pred cEEEEEeCcccEEEEEEECCEEEEEECCCCCccCceEEEEeCCCCEEEcHHHHHhhhhCcccchHHHHHHhCCCccchh-
Confidence 3899999999999999999999999999999999999999764 89999999999999999999999999999998864
Q ss_pred HhhcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH
Q psy3431 81 QQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (549)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa 159 (549)
...+++||.++. .++...+. +.+ ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 82 -~~~~~~~~~~v~~~~~~~~~~--i~~--~~~~peei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 156 (653)
T PRK13411 82 -EERSRVPYTCVKGRDDTVNVQ--IRG--RNYTPQEISAMILQKLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAG 156 (653)
T ss_pred -HHhhcCCceEEecCCCceEEE--ECC--EEECHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCcHHHHHHHHHH
Confidence 345788999875 44444443 455 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHH
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 239 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l 239 (549)
++|||++++||+||+|||++|++.+. ..+.++||||+||||||+||+++.++ .++|+++.||.++||.+||.+|++|+
T Consensus 157 ~~AGl~v~~li~EPtAAAl~y~~~~~-~~~~~vlV~DlGgGT~dvsi~~~~~~-~~~V~at~gd~~LGG~dfD~~l~~~l 234 (653)
T PRK13411 157 TIAGLEVLRIINEPTAAALAYGLDKQ-DQEQLILVFDLGGGTFDVSILQLGDG-VFEVKATAGNNHLGGDDFDNCIVDWL 234 (653)
T ss_pred HHcCCCeEEEecchHHHHHHhccccc-CCCCEEEEEEcCCCeEEEEEEEEeCC-EEEEEEEecCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999998754 34688999999999999999999988 99999999999999999999999999
Q ss_pred HHHHHhccc--------------cccccCC--------------------------------------------------
Q psy3431 240 AEEFKRKCR--------------SASDVGD-------------------------------------------------- 255 (549)
Q Consensus 240 ~~~~~~~~~--------------~~~e~~K-------------------------------------------------- 255 (549)
.++|+.+++ .+||++|
T Consensus 235 ~~~f~~~~~~d~~~~~~~~~rL~~~aE~aK~~LS~~~~~~i~i~~~~~d~~~~~~~~~~itR~~fe~l~~~l~~~~~~~i 314 (653)
T PRK13411 235 VENFQQQEGIDLSQDKMALQRLREAAEKAKIELSSMLTTSINLPFITADETGPKHLEMELTRAKFEELTKDLVEATIEPM 314 (653)
T ss_pred HHHHHHhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 999976543 5677777
Q ss_pred ---------CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEec
Q psy3431 256 ---------HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVT 315 (549)
Q Consensus 256 ---------~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~ 315 (549)
++++|+.| ||+.|+++|++..+..++|||+|||+|||++|+++++ .++++.+.|++
T Consensus 315 ~~~L~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f~~~~~~~~~npdeaVA~GAAi~aa~l~~----~~~~~~~~dv~ 390 (653)
T PRK13411 315 QQALKDAGLKPEDIDRVILVGGSTRIPAVQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGG----EVKDLLLLDVT 390 (653)
T ss_pred HHHHHHcCCCHHHCcEEEEECCCCCcchHHHHHHHHcCCcCcCCCCCchHHHHHHHHHHHHhhcC----Cccceeeeecc
Confidence 11112222 9999999998788889999999999999999999987 36789999999
Q ss_pred cccceEEeeCCeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEE
Q psy3431 316 PLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVT 395 (549)
Q Consensus 316 ~~~igi~~~~~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~ 395 (549)
|++||++..++.+.+|||+|++||++++.+|++..|+|+.+.|.+|||++..+.+|..||+|.|.++|+++.|.++|+|+
T Consensus 391 p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~v~~ge~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~ 470 (653)
T PRK13411 391 PLSLGIETLGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIPPAPRGVPQIEVS 470 (653)
T ss_pred cceeeEEecCCceEEEEECCCcccceeeEEEEeccCCCeEEEEEEEEecCcccccCceeeEEEEcCCCCCCCCCccEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Q psy3431 396 FDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAG 475 (549)
Q Consensus 396 ~~~d~~g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~ 475 (549)
|.+|.||+|+|++.+..+|+...+.+.+. .+|++++++++++++.++..+|+.++++.++||+||+|+|.+|+.|.+..
T Consensus 471 f~id~~Gil~v~a~d~~t~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~~~~ 549 (653)
T PRK13411 471 FEIDVNGILKVSAQDQGTGREQSIRITNT-GGLSSNEIERMRQEAEKYAEEDRRRKQLIELKNQADSLLYSYESTLKENG 549 (653)
T ss_pred EEECCCCeEEEEEeeccCCceEeeEEecc-ccchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999988888765 67999999999999999999999999999999999999999999997644
Q ss_pred CccChhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy3431 476 NKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGG 532 (549)
Q Consensus 476 ~~~~~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~ 532 (549)
.++++++|+.+.+.++++++||+++ +++.++|++++++|++.+.++..+++++.|+
T Consensus 550 ~~~~~~er~~i~~~l~~~~~wL~~~-~~~~~~~~~~~~el~~~~~~i~~~~y~~~~~ 605 (653)
T PRK13411 550 ELISEELKQRAEQKVEQLEAALTDP-NISLEELKQQLEEFQQALLAIGAEVYQQGGS 605 (653)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 7899999999999999999999984 4689999999999999999999998875543
No 5
>PTZ00186 heat shock 70 kDa precursor protein; Provisional
Probab=100.00 E-value=8.3e-93 Score=763.58 Aligned_cols=515 Identities=50% Similarity=0.792 Sum_probs=473.1
Q ss_pred CEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCCceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHHH
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKIQ 81 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 81 (549)
.+||||||||||+||++++|.+++++|..|.+.+||+|+|.++++++|..|+.++.++|.++++++||+||+.++++.++
T Consensus 28 ~viGIDLGTTnS~vA~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~lvG~~Ak~~~~~~p~~ti~~~KRliG~~~~d~~v~ 107 (657)
T PTZ00186 28 DVIGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQSTFYAVKRLIGRRFEDEHIQ 107 (657)
T ss_pred eEEEEEeCcCeEEEEEEeCCceEEeecCCCCcccceEEEECCCCEEEcHHHHHhhhhCchhHHHHHHHHhccccccHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHH
Q psy3431 82 QDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA 160 (549)
Q Consensus 82 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~ 160 (549)
...+.+||.++. .++...+. ..+ ...++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||+
T Consensus 108 ~~~~~~p~~vv~~~~~~~~i~--~~~-~~~~speeisa~iL~~Lk~~Ae~~lg~~v~~aVITVPayF~~~qR~at~~Aa~ 184 (657)
T PTZ00186 108 KDIKNVPYKIVRAGNGDAWVQ--DGN-GKQYSPSQIGAFVLEKMKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGT 184 (657)
T ss_pred HhhccCcEEEEEcCCCceEEE--eCC-CeEEcHHHHHHHHHHHHHHHHHHHhCCccceEEEEECCCCChHHHHHHHHHHH
Confidence 999999999986 34443332 222 37899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHH
Q psy3431 161 IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 240 (549)
Q Consensus 161 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~ 240 (549)
+|||++++||+||+|||++|++... .+.++||||+||||||+||+++.++ .++++++.||.++||.+||.+|++|+.
T Consensus 185 ~AGl~v~rlInEPtAAAlayg~~~~--~~~~vlV~DlGGGT~DvSil~~~~g-~~~V~at~Gd~~LGG~DfD~~l~~~~~ 261 (657)
T PTZ00186 185 IAGLNVIRVVNEPTAAALAYGMDKT--KDSLIAVYDLGGGTFDISVLEIAGG-VFEVKATNGDTHLGGEDFDLALSDYIL 261 (657)
T ss_pred HcCCCeEEEEcChHHHHHHHhccCC--CCCEEEEEECCCCeEEEEEEEEeCC-EEEEEEecCCCCCCchhHHHHHHHHHH
Confidence 9999999999999999999998754 5689999999999999999999988 999999999999999999999999999
Q ss_pred HHHHhccc--------------cccccCC---------------------------------------------------
Q psy3431 241 EEFKRKCR--------------SASDVGD--------------------------------------------------- 255 (549)
Q Consensus 241 ~~~~~~~~--------------~~~e~~K--------------------------------------------------- 255 (549)
++|+.+++ .+||++|
T Consensus 262 ~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~i~~~~~g~~~~~~~ItR~efe~l~~~l~~r~~~~v~ 341 (657)
T PTZ00186 262 EEFRKTSGIDLSKERMALQRVREAAEKAKCELSSAMETEVNLPFITANADGAQHIQMHISRSKFEGITQRLIERSIAPCK 341 (657)
T ss_pred HHHhhhcCCCcccCHHHHHHHHHHHHHHHHHhCCCCceEEEEeeeccCCCCCcceEEEecHHHHHHHHHHHHHHHHHHHH
Confidence 99987654 5688877
Q ss_pred --------CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEecc
Q psy3431 256 --------HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTP 316 (549)
Q Consensus 256 --------~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~~ 316 (549)
++.+|+.| |+++|+++|+ ..+..++|||||||+|||++|+++++ .++++.+.|++|
T Consensus 342 ~~L~~a~~~~~dId~VvLVGGssriP~V~~~l~~~fg-~~~~~~~nPdeaVA~GAAi~a~~l~~----~~~~~~l~Dv~p 416 (657)
T PTZ00186 342 QCMKDAGVELKEINDVVLVGGMTRMPKVVEEVKKFFQ-KDPFRGVNPDEAVALGAATLGGVLRG----DVKGLVLLDVTP 416 (657)
T ss_pred HHHHHcCCChhhCCEEEEECCcccChHHHHHHHHHhC-CCccccCCCchHHHHhHHHHHHHhcc----ccCceEEEeecc
Confidence 12233333 9999999995 56678999999999999999999987 457889999999
Q ss_pred ccceEEeeCCeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEEE
Q psy3431 317 LSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTF 396 (549)
Q Consensus 317 ~~igi~~~~~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~~ 396 (549)
++||+++.+|.+.+|||||++||++++..|++..|||+.+.|+||||++..+.+|..||+|.|.++|+.|+|.++|+|+|
T Consensus 417 ~slgie~~~g~~~~iI~rnt~iP~~~~~~f~t~~dnQ~~v~i~i~qGe~~~~~~n~~lg~~~l~~ip~~~~G~~~I~Vtf 496 (657)
T PTZ00186 417 LSLGIETLGGVFTRMIPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQIEVTF 496 (657)
T ss_pred ccccceecCCEEEEEEeCCCEeeEEEeeccccccCCCceEEEEEEEecccccccccccceEEEcCCCCCCCCCCcEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhccC
Q psy3431 397 DLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGN 476 (549)
Q Consensus 397 ~~d~~g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~ 476 (549)
++|.||+|+|++.+..||++..++|... ..|+++++++++++.+++..+|+..+++.+++|++|++++.++..+.+. .
T Consensus 497 ~iD~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 574 (657)
T PTZ00186 497 DIDANGICHVTAKDKATGKTQNITITAN-GGLSKEQIEQMIRDSEQHAEADRVKRELVEVRNNAETQLTTAERQLGEW-K 574 (657)
T ss_pred EEcCCCEEEEEEEEccCCcEEEEEeccC-ccCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhhh-c
Confidence 9999999999999999999999999865 5699999999999999999999999999999999999999999999643 4
Q ss_pred ccChhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3431 477 KLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGA 530 (549)
Q Consensus 477 ~~~~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~ 530 (549)
.+++++++.+.+.+++.++||.. .+.+.+++++++++|++.+.++..+++...
T Consensus 575 ~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 627 (657)
T PTZ00186 575 YVSDAEKENVKTLVAELRKAMEN-PNVAKDDLAAATDKLQKAVMECGRTEYQQA 627 (657)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc-CCcCHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 68899999999999999999984 345779999999999999999998876544
No 6
>PRK13410 molecular chaperone DnaK; Provisional
Probab=100.00 E-value=4.6e-93 Score=769.27 Aligned_cols=514 Identities=47% Similarity=0.771 Sum_probs=469.4
Q ss_pred CEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeC-CceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHH
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKI 80 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (549)
.|||||||||||+||++++|.+.+|+|..|+|.+||+|+|.+ +++++|..|+.++.++|.++++++||+||+++.+ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KRliG~~~~~--~ 80 (668)
T PRK13410 3 RIVGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQNTFYNLKRFIGRRYDE--L 80 (668)
T ss_pred cEEEEEeCCCcEEEEEEECCeEEEEECCCCCccCceEEEEeCCCCEEECHHHHHhhHhCccceehHHhhhhCCCchh--h
Confidence 389999999999999999999999999999999999999975 5899999999999999999999999999999865 4
Q ss_pred HhhcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH
Q psy3431 81 QQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (549)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa 159 (549)
+.....+||.+.. .++...+.+...+ +.++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 81 ~~~~~~~~~~v~~~~~g~~~i~~~~~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 158 (668)
T PRK13410 81 DPESKRVPYTIRRNEQGNVRIKCPRLE--REFAPEELSAMILRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAG 158 (668)
T ss_pred HHhhccCCeEEEECCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHH
Confidence 5566789999875 4555555544333 789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHH
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 239 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l 239 (549)
++|||++++||+||+|||++|++.+. .+.++||||+||||||+||+++.++ .++|+++.||.++||.+||.+|++||
T Consensus 159 ~~AGl~v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~Dvsv~~~~~g-~~~V~at~gd~~lGG~dfD~~l~~~l 235 (668)
T PRK13410 159 RIAGLEVERILNEPTAAALAYGLDRS--SSQTVLVFDLGGGTFDVSLLEVGNG-VFEVKATSGDTQLGGNDFDKRIVDWL 235 (668)
T ss_pred HHcCCCeEEEecchHHHHHHhccccC--CCCEEEEEECCCCeEEEEEEEEcCC-eEEEEEeecCCCCChhHHHHHHHHHH
Confidence 99999999999999999999998754 5789999999999999999999988 99999999999999999999999999
Q ss_pred HHHHHhccc--------------cccccCC--------------------------------------------------
Q psy3431 240 AEEFKRKCR--------------SASDVGD-------------------------------------------------- 255 (549)
Q Consensus 240 ~~~~~~~~~--------------~~~e~~K-------------------------------------------------- 255 (549)
.++|..+++ .+||++|
T Consensus 236 ~~~f~~~~~~d~~~~~~a~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~FE~l~~~l~~r~~~~i 315 (668)
T PRK13410 236 AEQFLEKEGIDLRRDRQALQRLTEAAEKAKIELSGVSVTDISLPFITATEDGPKHIETRLDRKQFESLCGDLLDRLLRPV 315 (668)
T ss_pred HHHHHhhhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecCCCCCeeEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 999876543 4677777
Q ss_pred ---------CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEec
Q psy3431 256 ---------HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVT 315 (549)
Q Consensus 256 ---------~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~ 315 (549)
++++|+.| |+++|+++| +..+..++|||||||+|||++|+++++ .++++.+.|++
T Consensus 316 ~~~L~~ag~~~~dId~VvLVGGssRiP~V~~~l~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~l~Dv~ 390 (668)
T PRK13410 316 KRALKDAGLSPEDIDEVVLVGGSTRMPMVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAG----ELKDLLLLDVT 390 (668)
T ss_pred HHHHHHcCCChhhCcEEEEECCccccHHHHHHHHHHc-CCCcccCCCCchHHHHhHHHHHHhhcc----cccceeEEeec
Confidence 12233333 999999999 567888999999999999999999987 46789999999
Q ss_pred cccceEEeeCCeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEE
Q psy3431 316 PLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVT 395 (549)
Q Consensus 316 ~~~igi~~~~~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~ 395 (549)
|++||+++.+|.+.+|||+|++||++++.+|++..++|+.+.|++|||++..+.+|..||+|.|.++|+.++|.++|+|+
T Consensus 391 p~slgie~~~g~~~~li~rnt~iP~~~~~~f~t~~dnq~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~I~v~ 470 (668)
T PRK13410 391 PLSLGLETIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGIPPAPRGVPQVQVA 470 (668)
T ss_pred cccccceecCCeeEEEEeCCCcccccccccceeccCCCcEEEEEEEeeccccccCCceEEEEEEeCCCCCCCCCCeEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhc-
Q psy3431 396 FDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDA- 474 (549)
Q Consensus 396 ~~~d~~g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~- 474 (549)
|++|.||+|+|++.+..||++..++|... .+|++++++++++++.++..+|+..+++.++||+||+|+|.+|++|.+.
T Consensus 471 f~id~nGiL~V~a~d~~tg~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~e~kn~~e~~i~~~~~~l~~~~ 549 (668)
T PRK13410 471 FDIDANGILQVSATDRTTGREQSVTIQGA-STLSEQEVNRMIQEAEAKADEDRRRRERIEKRNRALTLIAQAERRLRDAA 549 (668)
T ss_pred EEECCCcEEEEEEEEcCCCceeeeeeccc-ccCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999988888765 6799999999999999999999999999999999999999999999752
Q ss_pred --c-CccChhHHHHHHHHHHHHHHHhhcCC-cCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3431 475 --G-NKLTESEKSRCREECDATLKWLDNNT-LADKEEYQDKLQQLQKSCMPLMSKMHG 528 (549)
Q Consensus 475 --~-~~~~~~e~~~i~~~l~~~~~Wl~~~~-~a~~~~~~~kl~~L~~~~~~i~~r~~e 528 (549)
. .++++++|+.+...++++++||+++. +...+.++++++.|+.+..++..|+.|
T Consensus 550 ~~~~~~~~~~~~~~~~~~l~~~~~wL~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 607 (668)
T PRK13410 550 LEFGPYFAERQRRAVESAMRDVQDSLEQDDDRELDLAVADLQEALYGLNREVRAEYKE 607 (668)
T ss_pred hhhhccCCHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2 77899999999999999999999764 466777888999999999999999988
No 7
>PLN03184 chloroplast Hsp70; Provisional
Probab=100.00 E-value=1.8e-92 Score=767.53 Aligned_cols=518 Identities=47% Similarity=0.799 Sum_probs=471.8
Q ss_pred CEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeC-CceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHH
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKI 80 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (549)
++||||||||||+||++++|.+++|+|..|+|.+||+|+|.+ +++++|..|+.++.++|.++++++|||||+++.+ +
T Consensus 40 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~ 117 (673)
T PLN03184 40 KVVGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPENTFFSVKRFIGRKMSE--V 117 (673)
T ss_pred CEEEEEeCcCcEEEEEEECCeEEEEECCCCCeecceEEEEcCCCCEEECHHHHHhhhhCchhhhHHHHHhhCCCcch--h
Confidence 489999999999999999999999999999999999999975 4899999999999999999999999999999876 4
Q ss_pred HhhcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH
Q psy3431 81 QQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (549)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa 159 (549)
+...+.+||.++. .++...+.+...+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 118 ~~~~~~~~~~v~~~~~~~v~~~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 195 (673)
T PLN03184 118 DEESKQVSYRVVRDENGNVKLDCPAIG--KQFAAEEISAQVLRKLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAG 195 (673)
T ss_pred hhhhhcCCeEEEecCCCcEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 5667789999985 4555555554445 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHH
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 239 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l 239 (549)
++|||++++||+||+|||++|++... .+.++||||+||||||+|++++.++ .++++++.||.++||.+||.+|++|+
T Consensus 196 ~~AGl~v~~li~EPtAAAlayg~~~~--~~~~vlV~DlGgGT~DvSi~~~~~~-~~eVla~~gd~~LGG~dfD~~L~~~~ 272 (673)
T PLN03184 196 RIAGLEVLRIINEPTAASLAYGFEKK--SNETILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLGGDDFDKRIVDWL 272 (673)
T ss_pred HHCCCCeEEEeCcHHHHHHHhhcccC--CCCEEEEEECCCCeEEEEEEEecCC-EEEEEEecCCCccCHHHHHHHHHHHH
Confidence 99999999999999999999998754 5678999999999999999999888 99999999999999999999999999
Q ss_pred HHHHHhccc--------------cccccCC--------------------------------------------------
Q psy3431 240 AEEFKRKCR--------------SASDVGD-------------------------------------------------- 255 (549)
Q Consensus 240 ~~~~~~~~~--------------~~~e~~K-------------------------------------------------- 255 (549)
.++|+.+++ .+||++|
T Consensus 273 ~~~f~~~~~~d~~~~~~~~~rL~~~aEkaK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~r~~~~i 352 (673)
T PLN03184 273 ASNFKKDEGIDLLKDKQALQRLTEAAEKAKIELSSLTQTSISLPFITATADGPKHIDTTLTRAKFEELCSDLLDRCKTPV 352 (673)
T ss_pred HHHHHhhcCCCcccCHHHHHHHHHHHHHHHHhcCCCCcceEEEEeeeccCCCCceEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 999987654 5678777
Q ss_pred ---------CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEec
Q psy3431 256 ---------HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVT 315 (549)
Q Consensus 256 ---------~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~ 315 (549)
++++|+.| ||++|+++| +..+..++|||+|||+|||++|+++++ +++++.+.|++
T Consensus 353 ~~~L~~a~~~~~dId~ViLvGGssriP~V~~~i~~~f-g~~~~~~~npdeaVA~GAAi~aa~ls~----~~~~~~~~dv~ 427 (673)
T PLN03184 353 ENALRDAKLSFKDIDEVILVGGSTRIPAVQELVKKLT-GKDPNVTVNPDEVVALGAAVQAGVLAG----EVSDIVLLDVT 427 (673)
T ss_pred HHHHHHcCCChhHccEEEEECCccccHHHHHHHHHHh-CCCcccccCcchHHHHHHHHHHHHhcc----CccceEEEecc
Confidence 11222222 999999999 567788999999999999999999987 56789999999
Q ss_pred cccceEEeeCCeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEE
Q psy3431 316 PLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVT 395 (549)
Q Consensus 316 ~~~igi~~~~~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~ 395 (549)
|++||+++.++.+.+|||+|++||++++.+|++..|+|+.+.|++|||++..+.+|..||+|.|.++|+.++|.++|+|+
T Consensus 428 p~slgi~~~~~~~~~ii~r~t~iP~~~~~~f~t~~d~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~ 507 (673)
T PLN03184 428 PLSLGLETLGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIPPAPRGVPQIEVK 507 (673)
T ss_pred cccceEEecCCeeEEEEeCCCccceecceEeeeecCCCcEEEEEEEeecccccccCceEEEEEEeCCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Q psy3431 396 FDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAG 475 (549)
Q Consensus 396 ~~~d~~g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~ 475 (549)
|.+|.||+|+|++.+..++++..+++... .+|++++++++++++.++..+|+..+++.++||+||+|+|.+|++|.+..
T Consensus 508 f~id~~GiL~V~a~~~~t~~~~~~~i~~~-~~ls~eei~~~~~~~~~~~~~D~~~~~~~eakN~lE~~iy~~r~~l~e~~ 586 (673)
T PLN03184 508 FDIDANGILSVSATDKGTGKKQDITITGA-STLPKDEVERMVQEAEKFAKEDKEKRDAVDTKNQADSVVYQTEKQLKELG 586 (673)
T ss_pred EEeCCCCeEEEEEEecCCCeEEEEEeccc-ccccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988754 57999999999999999999999999999999999999999999996433
Q ss_pred CccChhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q psy3431 476 NKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASA 535 (549)
Q Consensus 476 ~~~~~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~~~~ 535 (549)
.++++++++++.+.++++++||+.+ +.+++++++++|++.+.++..+++.++|+|++
T Consensus 587 ~~~~~eer~~l~~~l~~~e~wL~~~---d~~~ik~~~~~l~~~l~~l~~~~~~~~~~~~~ 643 (673)
T PLN03184 587 DKVPADVKEKVEAKLKELKDAIASG---STQKMKDAMAALNQEVMQIGQSLYNQPGAGGA 643 (673)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Confidence 7899999999999999999999975 67899999999999999999998877655443
No 8
>PTZ00400 DnaK-type molecular chaperone; Provisional
Probab=100.00 E-value=1.9e-92 Score=767.14 Aligned_cols=513 Identities=51% Similarity=0.848 Sum_probs=472.4
Q ss_pred CEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeC-CceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHH
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD-TERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKI 80 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~-~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (549)
++||||||||||+||++++|.+++++|..|+|.+||+|+|.+ +++++|..|+.++.++|.++++++|||||+.++++.+
T Consensus 42 ~viGIDlGTt~s~va~~~~~~~~ii~n~~g~r~tPS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d~~~ 121 (663)
T PTZ00400 42 DIVGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPENTVFATKRLIGRRYDEDAT 121 (663)
T ss_pred cEEEEEECcccEEEEEEeCCeeEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhHHhCCcceehhhhhhcCCCcCcHHH
Confidence 599999999999999999999999999999999999999975 4899999999999999999999999999999999999
Q ss_pred HhhcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH
Q psy3431 81 QQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (549)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa 159 (549)
+...+.+||.++. .++...+. ..+ ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||
T Consensus 122 ~~~~~~~p~~~~~~~~~~~~~~--~~~--~~~speel~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa 197 (663)
T PTZ00400 122 KKEQKILPYKIVRASNGDAWIE--AQG--KKYSPSQIGAFVLEKMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAG 197 (663)
T ss_pred HhhhccCCeEEEecCCCceEEE--ECC--EEECHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHHHH
Confidence 9999999999886 44544444 445 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHH
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 239 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l 239 (549)
++|||++++||+||+|||++|+.... .+.++||||+||||||+||+++.++ .++++++.||.++||.+||.+|++||
T Consensus 198 ~~AGl~v~~li~EptAAAlay~~~~~--~~~~vlV~DlGgGT~DvSv~~~~~g-~~~v~a~~gd~~LGG~d~D~~l~~~l 274 (663)
T PTZ00400 198 KIAGLDVLRIINEPTAAALAFGMDKN--DGKTIAVYDLGGGTFDISILEILGG-VFEVKATNGNTSLGGEDFDQRILNYL 274 (663)
T ss_pred HHcCCceEEEeCchHHHHHHhccccC--CCcEEEEEeCCCCeEEEEEEEecCC-eeEEEecccCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999998754 5789999999999999999999888 99999999999999999999999999
Q ss_pred HHHHHhccc--------------cccccCC--------------------------------------------------
Q psy3431 240 AEEFKRKCR--------------SASDVGD-------------------------------------------------- 255 (549)
Q Consensus 240 ~~~~~~~~~--------------~~~e~~K-------------------------------------------------- 255 (549)
.++|+++++ .+||++|
T Consensus 275 ~~~f~~~~~~~~~~~~~a~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~efe~l~~~l~~~~~~~i 354 (663)
T PTZ00400 275 IAEFKKQQGIDLKKDKLALQRLREAAETAKIELSSKTQTEINLPFITADQSGPKHLQIKLSRAKLEELTHDLLKKTIEPC 354 (663)
T ss_pred HHHhhhhcCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEEEeeccCCCCceEEEEEECHHHHHHHHHHHHHHHHHHH
Confidence 999986654 4677777
Q ss_pred ---------CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEec
Q psy3431 256 ---------HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVT 315 (549)
Q Consensus 256 ---------~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~ 315 (549)
++++|+.| |+++|+++|+ ..+..++|||++||+|||++|+++++ ..+++.+.|++
T Consensus 355 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~f~-~~~~~~~npdeaVA~GAAi~aa~l~~----~~~~~~~~dv~ 429 (663)
T PTZ00400 355 EKCIKDAGVKKDELNDVILVGGMTRMPKVSETVKKIFG-KEPSKGVNPDEAVAMGAAIQAGVLKG----EIKDLLLLDVT 429 (663)
T ss_pred HHHHHHcCCCHHHCcEEEEECCccCChHHHHHHHHHhC-CCcccCCCCccceeeccHHHHHhhcC----CccceEEEecc
Confidence 11222222 9999999994 56788999999999999999999987 46789999999
Q ss_pred cccceEEeeCCeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEE
Q psy3431 316 PLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVT 395 (549)
Q Consensus 316 ~~~igi~~~~~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~ 395 (549)
|++||+++.+|.+.+|||+|+++|++++.+|++..|+|+.+.|.||||++..+.+|..||+|.|.++|+.+.|.++|+|+
T Consensus 430 p~slgi~~~~g~~~~ii~~~t~iP~~~~~~f~~~~d~q~~~~i~i~ege~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~ 509 (663)
T PTZ00400 430 PLSLGIETLGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIPPAPRGVPQIEVT 509 (663)
T ss_pred ccceEEEecCCeeEEEEecCccCCccceeeeeeccCCCceEEEEEEEecCccCCcCceeEEEEEcCCCCCCCCCceEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Q psy3431 396 FDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAG 475 (549)
Q Consensus 396 ~~~d~~g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~ 475 (549)
|.+|.||+|+|++.+..+|+...+++... .+|++++++++++++.++..+|+..+++.++||+||+|+|.+|+.|.+..
T Consensus 510 f~id~~Gil~v~a~~~~~~~~~~~~i~~~-~~ls~~ei~~~~~~~~~~~~~D~~~~~~~eakN~lEs~iy~~r~~l~e~~ 588 (663)
T PTZ00400 510 FDVDANGIMNISAVDKSTGKKQEITIQSS-GGLSDEEIEKMVKEAEEYKEQDEKKKELVDAKNEAETLIYSVEKQLSDLK 588 (663)
T ss_pred EEECCCCCEEEEEEeccCCcEEEEEeecc-ccccHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999988765 57999999999999999999999999999999999999999999997533
Q ss_pred CccChhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3431 476 NKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGA 530 (549)
Q Consensus 476 ~~~~~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~ 530 (549)
..+++++++.+.+.++++++||+++ +.++|++++++|++.+.++..+++...
T Consensus 589 ~~~s~~ere~i~~~l~~~~~WL~~~---d~~~i~~k~~eL~~~l~~l~~k~y~~~ 640 (663)
T PTZ00400 589 DKISDADKDELKQKITKLRSTLSSE---DVDSIKDKTKQLQEASWKISQQAYKQG 640 (663)
T ss_pred hhCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 7899999999999999999999975 678999999999999999999876543
No 9
>PRK00290 dnaK molecular chaperone DnaK; Provisional
Probab=100.00 E-value=4.8e-91 Score=757.36 Aligned_cols=511 Identities=56% Similarity=0.891 Sum_probs=470.3
Q ss_pred CC-EEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEe-CCceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCCh
Q psy3431 1 MP-AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDP 78 (549)
Q Consensus 1 m~-vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~-~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~ 78 (549)
|+ +||||||||||+||++++|.+++++|..|+|.+||+|+|. ++++++|..|+.++.++|.++++++|||||++ ++
T Consensus 1 m~~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~--~~ 78 (627)
T PRK00290 1 MGKIIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPENTIFSIKRLMGRR--DE 78 (627)
T ss_pred CCcEEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEeCCCCEEEcHHHHHhhhhCchhhHHHHHHHhCCC--ch
Confidence 54 9999999999999999999999999999999999999997 56899999999999999999999999999999 67
Q ss_pred HHHhhcccCCeEEeec-CCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHH
Q psy3431 79 KIQQDMKHWPFTVVND-RSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKD 157 (549)
Q Consensus 79 ~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~ 157 (549)
.++...+.+||.++.. ++...+ .++| ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++
T Consensus 79 ~~~~~~~~~p~~~~~~~~~~~~~--~~~~--~~~~peel~a~iL~~lk~~ae~~~g~~v~~~VItVPa~f~~~qR~a~~~ 154 (627)
T PRK00290 79 EVQKDIKLVPYKIVKADNGDAWV--EIDG--KKYTPQEISAMILQKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKD 154 (627)
T ss_pred HHHHHhhcCCeEEEEcCCCceEE--EECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCCceEEEEECCCCCHHHHHHHHH
Confidence 7888889999999863 444444 4455 6899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHH
Q psy3431 158 AGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS 237 (549)
Q Consensus 158 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~ 237 (549)
||++|||++++||+||+|||++|++.+. .+.++||||+||||||+|++++.++ .++++++.||.++||.+||.+|++
T Consensus 155 Aa~~AGl~v~~li~EptAAAl~y~~~~~--~~~~vlV~D~GggT~dvsv~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~ 231 (627)
T PRK00290 155 AGKIAGLEVLRIINEPTAAALAYGLDKK--GDEKILVYDLGGGTFDVSILEIGDG-VFEVLSTNGDTHLGGDDFDQRIID 231 (627)
T ss_pred HHHHcCCceEEEecchHHHHHHhhhccC--CCCEEEEEECCCCeEEEEEEEEeCC-eEEEEEecCCCCcChHHHHHHHHH
Confidence 9999999999999999999999998764 5789999999999999999999888 999999999999999999999999
Q ss_pred HHHHHHHhccc--------------cccccCC------------------------------------------------
Q psy3431 238 HLAEEFKRKCR--------------SASDVGD------------------------------------------------ 255 (549)
Q Consensus 238 ~l~~~~~~~~~--------------~~~e~~K------------------------------------------------ 255 (549)
|+.++|+.+++ .+||++|
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~i~~~~~d~~g~~~~~~~itR~~fe~l~~~l~~~~~~ 311 (627)
T PRK00290 232 YLADEFKKENGIDLRKDKMALQRLKEAAEKAKIELSSAQQTEINLPFITADASGPKHLEIKLTRAKFEELTEDLVERTIE 311 (627)
T ss_pred HHHHHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCeEEEEEeecccCCCCCeEEEEEECHHHHHHHHHHHHHHHHH
Confidence 99999987654 4677777
Q ss_pred -----------CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEE
Q psy3431 256 -----------HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVD 313 (549)
Q Consensus 256 -----------~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d 313 (549)
++.+|+.| |++.|+++| +..+..++|||+|||+|||++|+.+++ +++++.+.|
T Consensus 312 ~i~~~l~~a~~~~~~id~ViLvGGssriP~v~~~l~~~f-g~~~~~~~npdeava~GAa~~aa~l~~----~~~~~~~~d 386 (627)
T PRK00290 312 PCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKGVNPDEVVAIGAAIQGGVLAG----DVKDVLLLD 386 (627)
T ss_pred HHHHHHHHcCCChhhCcEEEEECCcCCChHHHHHHHHHh-CCCCCcCcCChHHHHHhHHHHHHHhcC----Cccceeeee
Confidence 11122222 999999999 567888999999999999999999987 567899999
Q ss_pred eccccceEEeeCCeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEE
Q psy3431 314 VTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKID 393 (549)
Q Consensus 314 ~~~~~igi~~~~~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~ 393 (549)
++|++||++..+|.+.+|||+|+++|++++.+|++..++|+.+.|++|||++..+.+|..||+|.|.++|+.++|.++|+
T Consensus 387 ~~~~slgi~~~~~~~~~ii~~~t~~P~~~~~~f~~~~d~q~~~~i~v~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~ 466 (627)
T PRK00290 387 VTPLSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIE 466 (627)
T ss_pred ccceEEEEEecCCeEEEEecCCCcCCccceEEEEecCCCcceEEEEEEEecccccCcCceEEEEEECCCCCCCCCCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998999
Q ss_pred EEEEeCCCccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhh
Q psy3431 394 VTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDD 473 (549)
Q Consensus 394 v~~~~d~~g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~ 473 (549)
|+|.+|.||+|+|++.+..+|+...+++... .+|++++++++++++.++..+|+..+++.++||+||+|+|.+|++|++
T Consensus 467 v~f~~d~~gil~v~a~~~~~~~~~~~~i~~~-~~ls~e~i~~~~~~~~~~~~~d~~~~~~~eakN~le~~i~~~~~~l~~ 545 (627)
T PRK00290 467 VTFDIDANGIVHVSAKDKGTGKEQSITITAS-SGLSDEEIERMVKDAEANAEEDKKRKELVEARNQADSLIYQTEKTLKE 545 (627)
T ss_pred EEEEECCCceEEEEEEEccCCceeEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999988765 579999999999999999999999999999999999999999999974
Q ss_pred ccCccChhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3431 474 AGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGG 529 (549)
Q Consensus 474 ~~~~~~~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~ 529 (549)
...++++++++++.+.++++++||+++ +.++|++++++|+++++++..|+++.
T Consensus 546 ~~~~~~~~e~~~i~~~l~~~~~wL~~~---~~~~i~~k~~~L~~~~~~~~~~~~~~ 598 (627)
T PRK00290 546 LGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQKLGEAMYQQ 598 (627)
T ss_pred HhccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 337889999999999999999999976 77899999999999999999998764
No 10
>CHL00094 dnaK heat shock protein 70
Probab=100.00 E-value=1.4e-89 Score=743.45 Aligned_cols=511 Identities=51% Similarity=0.822 Sum_probs=466.8
Q ss_pred CEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCC-ceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHH
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKI 80 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (549)
.+||||||||||+||++++|.+++++|..|+|.+||+|+|.++ ++++|..|+.+...+|.++++++||+||+.+++ +
T Consensus 3 ~viGIDlGTt~s~va~~~~g~~~ii~n~~g~r~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~~--~ 80 (621)
T CHL00094 3 KVVGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPENTFYSVKRFIGRKFSE--I 80 (621)
T ss_pred ceEEEEeCcccEEEEEEECCEEEEEECCCCCcccceEEEEcCCCCEEECHHHHHhHHhCccceehhhHHhcCCChHH--H
Confidence 5999999999999999999999999999999999999999764 799999999999999999999999999999865 5
Q ss_pred HhhcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH
Q psy3431 81 QQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (549)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa 159 (549)
+...+.+||.+.. .++...+.+...+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||
T Consensus 81 ~~~~~~~~~~v~~~~~g~i~~~~~~~~--~~~s~eei~a~iL~~l~~~ae~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa 158 (621)
T CHL00094 81 SEEAKQVSYKVKTDSNGNIKIECPALN--KDFSPEEISAQVLRKLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAG 158 (621)
T ss_pred HhhhhcCCeEEEECCCCCEEEEEecCC--eEEcHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHH
Confidence 5666779999886 4565555554444 689999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHH
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 239 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l 239 (549)
++|||++++||+||+|||++|+.... .+.++||||+||||||+||+++.++ .++++++.|+.++||.+||.+|++|+
T Consensus 159 ~~AGl~v~~li~EptAAAlay~~~~~--~~~~vlV~DlGgGT~DvSv~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~~ 235 (621)
T CHL00094 159 KIAGLEVLRIINEPTAASLAYGLDKK--NNETILVFDLGGGTFDVSILEVGDG-VFEVLSTSGDTHLGGDDFDKKIVNWL 235 (621)
T ss_pred HHcCCceEEEeccHHHHHHHhccccC--CCCEEEEEEcCCCeEEEEEEEEcCC-EEEEEEEecCCCcChHHHHHHHHHHH
Confidence 99999999999999999999998754 5678999999999999999999888 99999999999999999999999999
Q ss_pred HHHHHhccc--------------cccccCC--------------------------------------------------
Q psy3431 240 AEEFKRKCR--------------SASDVGD-------------------------------------------------- 255 (549)
Q Consensus 240 ~~~~~~~~~--------------~~~e~~K-------------------------------------------------- 255 (549)
.++|+.+++ .+||++|
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~L~~~aE~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itR~~fe~l~~~l~~~~~~~i 315 (621)
T CHL00094 236 IKEFKKKEGIDLSKDRQALQRLTEAAEKAKIELSNLTQTEINLPFITATQTGPKHIEKTLTRAKFEELCSDLINRCRIPV 315 (621)
T ss_pred HHHHHHHhCCCcccCHHHHHHHHHHHHHHHHhcCCCCceEEEEeecccCCCCCeeEEEEEcHHHHHHHHHHHHHHHHHHH
Confidence 999987654 5677777
Q ss_pred ---------CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEec
Q psy3431 256 ---------HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVT 315 (549)
Q Consensus 256 ---------~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~ 315 (549)
++.+|+.| |+++|+++|| ..+..++|||+|||+|||++|+.+++ ..+++.+.|++
T Consensus 316 ~~~L~~a~~~~~~i~~ViLvGGssriP~v~~~l~~~fg-~~~~~~~~pdeava~GAA~~aa~ls~----~~~~~~~~d~~ 390 (621)
T CHL00094 316 ENALKDAKLDKSDIDEVVLVGGSTRIPAIQELVKKLLG-KKPNQSVNPDEVVAIGAAVQAGVLAG----EVKDILLLDVT 390 (621)
T ss_pred HHHHHHcCCChhhCcEEEEECCccCChHHHHHHHHHhC-CCcCcCCCchhHHHhhhHHHHHHhcC----Cccceeeeeee
Confidence 11122222 9999999994 67888999999999999999999987 46788999999
Q ss_pred cccceEEeeCCeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEE
Q psy3431 316 PLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVT 395 (549)
Q Consensus 316 ~~~igi~~~~~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~ 395 (549)
|++||++..+|.+.+|||+|+++|++++.+|++..++|+.+.|.+|||++..+.+|..||+|.|.++|+.++|.++|+|+
T Consensus 391 ~~~lgi~~~~~~~~~ii~~~t~iP~~~~~~~~~~~~~q~~v~i~i~~ge~~~~~~n~~lg~~~i~~~~~~~~g~~~i~v~ 470 (621)
T CHL00094 391 PLSLGVETLGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIPPAPRGVPQIEVT 470 (621)
T ss_pred ceeeeeeccCCEEEEEEeCCCccceeeeEEEEeccCCCcEEEEEEEeeccccCCCCCEEEEEEEeCCCCCCCCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred EEeCCCccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Q psy3431 396 FDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAG 475 (549)
Q Consensus 396 ~~~d~~g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~ 475 (549)
|++|.||+|+|++.+..||+...+++.+. .+|++++++++++++.++..+|+..+++.+++|+||+|+|.+|++|.+..
T Consensus 471 f~id~~Gil~v~~~~~~t~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~kn~le~~i~~~~~~l~~~~ 549 (621)
T CHL00094 471 FDIDANGILSVTAKDKGTGKEQSITIQGA-STLPKDEVERMVKEAEKNAAEDKEKREKIDLKNQAESLCYQAEKQLKELK 549 (621)
T ss_pred EEECCCCeEEEEEeeccCCceeeeeeccc-hhccHHHHHHHHHHHHHhhhcchhHHHHHHHHHHhHHHHHHHHHHHHHHh
Confidence 99999999999999999999988888754 57999999999999999999999999999999999999999999997522
Q ss_pred CccChhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3431 476 NKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 528 (549)
Q Consensus 476 ~~~~~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e 528 (549)
.++++++|+++.+.++++++||+++ +.+++++++++|++.++++..+++.
T Consensus 550 ~~~~~~~~~~~~~~l~~~~~wl~~~---~~~~~~~~~~~l~~~~~~~~~kl~~ 599 (621)
T CHL00094 550 DKISEEKKEKIENLIKKLRQALQND---NYESIKSLLEELQKALMEIGKEVYS 599 (621)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999975 5589999999999999999998866
No 11
>TIGR02350 prok_dnaK chaperone protein DnaK. Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.
Probab=100.00 E-value=1.7e-89 Score=743.25 Aligned_cols=509 Identities=57% Similarity=0.897 Sum_probs=466.5
Q ss_pred CEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCC-ceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHH
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKI 80 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (549)
.|||||||||||+||++++|.+++++|..|+|.+||+|+|.++ ++++|..|+.++.++|.++++++||+||+++ +.+
T Consensus 1 ~viGIDlGtt~s~va~~~~g~~~ii~n~~~~~~~PS~V~~~~~~~~~vG~~A~~~~~~~p~~~i~~~Kr~iG~~~--~~~ 78 (595)
T TIGR02350 1 KIIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPENTIYSIKRFMGRRF--DEV 78 (595)
T ss_pred CEEEEEeCcccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEECHHHHHhhhhCchhhhHHHHHHhCCCc--hHH
Confidence 4899999999999999999999999999999999999999866 8999999999999999999999999999998 346
Q ss_pred HhhcccCCeEEeecCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHH
Q psy3431 81 QQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA 160 (549)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~ 160 (549)
+...+.+||.+...++...+.+ ++ ..++|+++++++|++|++.|+.+++.++.++|||||++|++.||+++++||+
T Consensus 79 ~~~~~~~~~~v~~~~~~~~~~v--~~--~~~~peel~a~~L~~l~~~a~~~~~~~v~~~VItVPa~f~~~qR~a~~~Aa~ 154 (595)
T TIGR02350 79 TEEAKRVPYKVVGDGGDVRVKV--DG--KEYTPQEISAMILQKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGK 154 (595)
T ss_pred HHHhhcCCeeEEcCCCceEEEE--CC--EEecHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEECCCCCHHHHHHHHHHHH
Confidence 7778889999655666555554 45 6899999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHH
Q psy3431 161 IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 240 (549)
Q Consensus 161 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~ 240 (549)
+|||++++||+||+|||++|++.+. ..+.++||||+||||||+|++++.++ .++++++.|+..+||.+||.+|++|+.
T Consensus 155 ~AGl~v~~li~EptAAAl~y~~~~~-~~~~~vlV~D~Gggt~dvsv~~~~~~-~~~v~~~~gd~~lGG~d~D~~l~~~~~ 232 (595)
T TIGR02350 155 IAGLEVLRIINEPTAAALAYGLDKS-KKDEKILVFDLGGGTFDVSILEIGDG-VFEVLSTAGDTHLGGDDFDQRIIDWLA 232 (595)
T ss_pred HcCCceEEEecchHHHHHHHhhccc-CCCcEEEEEECCCCeEEEEEEEecCC-eEEEEEecCCcccCchhHHHHHHHHHH
Confidence 9999999999999999999998753 35789999999999999999999988 999999999999999999999999999
Q ss_pred HHHHhccc--------------cccccCC---------------------------------------------------
Q psy3431 241 EEFKRKCR--------------SASDVGD--------------------------------------------------- 255 (549)
Q Consensus 241 ~~~~~~~~--------------~~~e~~K--------------------------------------------------- 255 (549)
++|+++++ .+||++|
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~~~g~~~~~~~itr~~fe~l~~~l~~~~~~~i~ 312 (595)
T TIGR02350 233 DEFKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRAKFEELTADLVERTKEPVR 312 (595)
T ss_pred HHHHHhhCCCcccCHHHHHHHHHHHHHHHHHcCCCCceEEEeeecccCCCCCeeEEEEEeHHHHHHHHHHHHHHHHHHHH
Confidence 99987654 4677777
Q ss_pred --------CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEecc
Q psy3431 256 --------HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTP 316 (549)
Q Consensus 256 --------~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~~ 316 (549)
++.+|+.| |++.|+++|+ ..+..++|||+|||+|||++|+.+++ .++++.+.|++|
T Consensus 313 ~~l~~a~~~~~~i~~V~LvGGssriP~v~~~i~~~f~-~~~~~~~~pdeava~GAa~~aa~l~~----~~~~~~~~d~~~ 387 (595)
T TIGR02350 313 QALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFFG-KEPNKSVNPDEVVAIGAAIQGGVLKG----DVKDVLLLDVTP 387 (595)
T ss_pred HHHHHcCCCHhHCcEEEEECCcccChHHHHHHHHHhC-CcccCCcCcHHHHHHHHHHHHHHhcC----Ccccceeeeccc
Confidence 11122222 9999999995 67888999999999999999999987 367889999999
Q ss_pred ccceEEeeCCeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEEE
Q psy3431 317 LSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTF 396 (549)
Q Consensus 317 ~~igi~~~~~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~~ 396 (549)
++||+++.+|.+.+|||+|+++|++++.+|++..|+|+.+.|.+|||++..+.+|..||++.|+++|+.+.|.++|+++|
T Consensus 388 ~~igi~~~~~~~~~ii~~~~~iP~~~~~~~~~~~d~q~~v~i~i~~ge~~~~~~~~~lg~~~i~~~~~~~~g~~~i~v~f 467 (595)
T TIGR02350 388 LSLGIETLGGVMTKLIERNTTIPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTF 467 (595)
T ss_pred ceeEEEecCCceEEEEeCCCcCCccceEeeeccCCCCcEEEEEEEeecccccccCcEeEEEEECCCCCCCCCCceEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhccC
Q psy3431 397 DLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGN 476 (549)
Q Consensus 397 ~~d~~g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~ 476 (549)
.+|.||+|+|++.+..+|+...++++.. .+||+++++++++++.++..+|+..+++.+++|+||+|||.+|++|++...
T Consensus 468 ~~d~~G~l~v~~~~~~~~~~~~~~i~~~-~~ls~~~~~~~~~~~~~~~~~D~~~~~~~e~kn~lEs~iy~~r~~l~~~~~ 546 (595)
T TIGR02350 468 DIDANGILHVSAKDKGTGKEQSITITAS-SGLSEEEIERMVKEAEANAEEDKKRKEEIEARNNADSLAYQAEKTLKEAGD 546 (595)
T ss_pred EEcCCCeEEEEEEEccCCceEEEEeccc-cccCHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999988765 579999999999999999999999999999999999999999999975347
Q ss_pred ccChhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHh
Q psy3431 477 KLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMH 527 (549)
Q Consensus 477 ~~~~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~ 527 (549)
++++++++++.+.++++++||+++ +..++++++++|++.++++..+++
T Consensus 547 ~~~~~e~~~l~~~l~~~~~wL~~~---d~~~i~~~~~~l~~~~~~~~~~~~ 594 (595)
T TIGR02350 547 KLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQALQKLAEAMY 594 (595)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHh
Confidence 899999999999999999999976 678999999999999999997753
No 12
>PRK05183 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=9.5e-89 Score=733.45 Aligned_cols=511 Identities=40% Similarity=0.646 Sum_probs=466.4
Q ss_pred CEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCCceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHHH
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKIQ 81 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 81 (549)
.+||||||||||+||++.+|.+++++|..|++.+||+|+|.++++++|..|+.++.++|.++++++||+||+.+.+ ++
T Consensus 20 ~~iGIDlGTt~s~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~vG~~A~~~~~~~p~~ti~~~KrliG~~~~d--~~ 97 (616)
T PRK05183 20 LAVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKNTISSVKRFMGRSLAD--IQ 97 (616)
T ss_pred eEEEEEeccccEEEEEEECCEEEEEEcCCCCeecCeEEEEcCCCEEEcHHHHHhhHhCchhhHHHHHHHhCCCchh--hh
Confidence 4799999999999999999999999999999999999999988999999999999999999999999999999876 34
Q ss_pred hhcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHH
Q psy3431 82 QDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA 160 (549)
Q Consensus 82 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~ 160 (549)
.....+||.+.. .++.+.+.+ .+ ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++||+
T Consensus 98 ~~~~~~~~~~~~~~~g~~~~~~--~~--~~~~p~ei~a~iL~~lk~~ae~~lg~~v~~~VITVPa~f~~~qR~a~~~Aa~ 173 (616)
T PRK05183 98 QRYPHLPYQFVASENGMPLIRT--AQ--GLKSPVEVSAEILKALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAAR 173 (616)
T ss_pred hhhhcCCeEEEecCCCceEEEe--cC--CeEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 455678998875 456655554 23 3789999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHH
Q psy3431 161 IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 240 (549)
Q Consensus 161 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~ 240 (549)
+|||++++||+||+|||++|++... .+.++||||+||||||+|++++.++ .++++++.||.++||.+||.+|++|+.
T Consensus 174 ~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~DvSv~~~~~~-~~evlat~gd~~lGG~d~D~~l~~~~~ 250 (616)
T PRK05183 174 LAGLNVLRLLNEPTAAAIAYGLDSG--QEGVIAVYDLGGGTFDISILRLSKG-VFEVLATGGDSALGGDDFDHLLADWIL 250 (616)
T ss_pred HcCCCeEEEecchHHHHHHhhcccC--CCCEEEEEECCCCeEEEEEEEeeCC-EEEEEEecCCCCcCHHHHHHHHHHHHH
Confidence 9999999999999999999998754 4789999999999999999999888 999999999999999999999999999
Q ss_pred HHHHhccc----------cccccCC-------------------------------------------------CCCChH
Q psy3431 241 EEFKRKCR----------SASDVGD-------------------------------------------------HHGDAH 261 (549)
Q Consensus 241 ~~~~~~~~----------~~~e~~K-------------------------------------------------~~~~i~ 261 (549)
++++.... .+||++| ++++|+
T Consensus 251 ~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~~~i~ 330 (616)
T PRK05183 251 EQAGLSPRLDPEDQRLLLDAARAAKEALSDADSVEVSVALWQGEITREQFNALIAPLVKRTLLACRRALRDAGVEADEVK 330 (616)
T ss_pred HHcCCCcCCCHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCCeEcHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC
Confidence 98875442 5677777 233455
Q ss_pred HH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEeccccceEEeeCCeeeE
Q psy3431 262 FV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTK 330 (549)
Q Consensus 262 ~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~~~~~~ 330 (549)
.| |++.|+++|+ ..+..++|||+|||+|||++|+.+++ .+..+++.+.|++|++||++..+|.+.+
T Consensus 331 ~ViLvGGssriP~v~~~l~~~fg-~~~~~~~npdeaVA~GAAi~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~g~~~~ 407 (616)
T PRK05183 331 EVVMVGGSTRVPLVREAVGEFFG-RTPLTSIDPDKVVAIGAAIQADILAG--NKPDSDMLLLDVIPLSLGLETMGGLVEK 407 (616)
T ss_pred EEEEECCcccChHHHHHHHHHhc-cCcCcCCCchHHHHHHHHHHHHHhcc--ccccCceEEEeeccccccceecCCeEEE
Confidence 55 9999999995 55667899999999999999999987 4456789999999999999999999999
Q ss_pred EEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEEEEeCCCccEEEEEEe
Q psy3431 331 LIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKD 410 (549)
Q Consensus 331 li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~~~~d~~g~l~v~~~~ 410 (549)
|||+|++||++++..|++..|+|+.+.|++|||++..+.+|..||+|.|.++|+.+.|.++|+|+|.+|.||+|+|++.+
T Consensus 408 ii~r~t~iP~~~~~~~~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~i~~i~~~~~g~~~i~v~f~~d~~Gil~V~a~~ 487 (616)
T PRK05183 408 IIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGIPPMAAGAARIRVTFQVDADGLLSVTAME 487 (616)
T ss_pred EEeCCCcccccccEEEEeccCCCeEEEEEEecccccccccccEEEEEEeCCCCCCCCCCccEEEEEEECCCCeEEEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhccCccChhHHHHHHHHH
Q psy3431 411 TSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREEC 490 (549)
Q Consensus 411 ~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~~~e~~~i~~~l 490 (549)
..+|++..+.+.+. .+|++++++++++++.++..+|+..+++.+++|++|+|+|.+++.+.+....+++++|+.+.+.+
T Consensus 488 ~~~~~~~~~~i~~~-~~ls~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l 566 (616)
T PRK05183 488 KSTGVEASIQVKPS-YGLTDDEIARMLKDSMSHAEEDMQARALAEQKVEAERVLEALQAALAADGDLLSAAERAAIDAAM 566 (616)
T ss_pred cCCCcEEEeccccc-ccCCHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 99999999988765 46999999999999999999999999999999999999999999996544678999999999999
Q ss_pred HHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3431 491 DATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 528 (549)
Q Consensus 491 ~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e 528 (549)
+++++||+.+ +.+++++++++|++.+.++..+..+
T Consensus 567 ~~~~~~l~~~---d~~~~~~~~~~l~~~~~~~~~~~~~ 601 (616)
T PRK05183 567 AALREVAQGD---DADAIEAAIKALDKATQEFAARRMD 601 (616)
T ss_pred HHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999864 7789999999999999999986554
No 13
>TIGR01991 HscA Fe-S protein assembly chaperone HscA. The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.
Probab=100.00 E-value=1.9e-88 Score=729.80 Aligned_cols=509 Identities=40% Similarity=0.637 Sum_probs=462.5
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCC-ceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHHH
Q psy3431 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKIQ 81 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~ 81 (549)
+||||||||||+||++++|.+++++|..|++.+||+|+|.++ .+++|..|+.++.++|.++++++|||||+.+.+...
T Consensus 1 ~iGIDlGTtns~va~~~~g~~~ii~n~~g~~~~PS~V~f~~~~~~~vG~~A~~~~~~~p~~ti~~~Kr~iG~~~~d~~~- 79 (599)
T TIGR01991 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPKNTISSVKRLMGRSIEDIKT- 79 (599)
T ss_pred CEEEEEccccEEEEEEECCEEEEEECCCCCcccCeEEEEeCCCCEEecHHHHHhhhhChhhhHHHHHHHhCCCccchhh-
Confidence 589999999999999999999999999999999999999866 899999999999999999999999999999877532
Q ss_pred hhcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHH
Q psy3431 82 QDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA 160 (549)
Q Consensus 82 ~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~ 160 (549)
.+.+||.+.. .++...+.+ .+ ..++|+++++++|++|++.|+.+++.++.++|||||+||++.||+++++||+
T Consensus 80 --~~~~~~~~~~~~~~~~~~~~--~~--~~~~p~ei~a~iL~~lk~~a~~~lg~~v~~~VItVPa~f~~~qR~a~~~Aa~ 153 (599)
T TIGR01991 80 --FSILPYRFVDGPGEMVRLRT--VQ--GTVTPVEVSAEILKKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAAR 153 (599)
T ss_pred --cccCCEEEEEcCCCceEEEe--CC--CEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHHHHH
Confidence 5678998875 345554444 33 3789999999999999999999999999999999999999999999999999
Q ss_pred HcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHH
Q psy3431 161 IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 240 (549)
Q Consensus 161 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~ 240 (549)
+|||++++||+||+|||++|++.+. .+.++||||+||||||+|++++.++ .++++++.||.++||.+||.+|++|+.
T Consensus 154 ~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGgGT~DvSi~~~~~~-~~~vla~~gd~~lGG~d~D~~l~~~l~ 230 (599)
T TIGR01991 154 LAGLNVLRLLNEPTAAAVAYGLDKA--SEGIYAVYDLGGGTFDVSILKLTKG-VFEVLATGGDSALGGDDFDHALAKWIL 230 (599)
T ss_pred HcCCCceEEecCHHHHHHHHhhccC--CCCEEEEEEcCCCeEEEEEEEEcCC-eEEEEEEcCCCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999998764 5788999999999999999999888 999999999999999999999999999
Q ss_pred HHHHhccc----------cccccCC-----------------------------------------------------CC
Q psy3431 241 EEFKRKCR----------SASDVGD-----------------------------------------------------HH 257 (549)
Q Consensus 241 ~~~~~~~~----------~~~e~~K-----------------------------------------------------~~ 257 (549)
++++.... .+||++| ++
T Consensus 231 ~~~~~~~~~~~~~~~~L~~~ae~aK~~LS~~~~~~i~i~~~g~~~~~~itr~efe~l~~~ll~~i~~~i~~~L~~a~~~~ 310 (599)
T TIGR01991 231 KQLGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFKGKLTRDEFEALIQPLVQKTLSICRRALRDAGLSV 310 (599)
T ss_pred HhhCCCCCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEEECCcEEEEEEeHHHHHHHHHHHHHHHHHHHHHHHHHcCCCh
Confidence 88753311 4566666 33
Q ss_pred CChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEeccccceEEeeCC
Q psy3431 258 GDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGG 326 (549)
Q Consensus 258 ~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~~ 326 (549)
.+|+.| |+++|+++|+ ..+..++|||+|||+|||++|+.+++ .+..+++.+.|++|++||+++.+|
T Consensus 311 ~~id~ViLvGGssriP~V~~~l~~~f~-~~~~~~~npdeaVA~GAai~a~~l~~--~~~~~~~~l~dv~p~slgi~~~~g 387 (599)
T TIGR01991 311 EEIKGVVLVGGSTRMPLVRRAVAELFG-QEPLTDIDPDQVVALGAAIQADLLAG--NRIGNDLLLLDVTPLSLGIETMGG 387 (599)
T ss_pred hhCCEEEEECCcCCChHHHHHHHHHhC-CCCCCCCCCcHHHHHHHHHHHHHhcc--ccccCceEEEEeeeeeeEEEecCC
Confidence 445554 9999999995 56677899999999999999999997 456678999999999999999999
Q ss_pred eeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEEEEeCCCccEEE
Q psy3431 327 VMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNV 406 (549)
Q Consensus 327 ~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~~~~d~~g~l~v 406 (549)
.+.+|||+|++||++++..|++..|+|+.+.|++|||++..+.+|..||+|.|.++|+.+.|.++|+|+|++|.||+|+|
T Consensus 388 ~~~~ii~rnt~iP~~~~~~~~t~~d~q~~v~i~i~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~v~f~id~~gil~V 467 (599)
T TIGR01991 388 LVEKIIPRNTPIPVARAQEFTTYKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTV 467 (599)
T ss_pred EEEEEEeCCCcCCccceEEEEEccCCCeEEEEEEEeecccccccCceEEEEEEcCCCCCCCCCCcEEEEEEECCCCeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhccCccChhHHHHH
Q psy3431 407 TAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRC 486 (549)
Q Consensus 407 ~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~~~e~~~i 486 (549)
++.+..||++..+.+.+. .+|++++++++++++.++..+|+..+++.+++|++|+|+|.++..+.+....+++++|+.+
T Consensus 468 ~a~~~~t~~~~~~~i~~~-~~l~~~~i~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 546 (599)
T TIGR01991 468 SAQEQSTGVEQSIQVKPS-YGLSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEALQAALAADGDLLSEDERAAI 546 (599)
T ss_pred EEEECCCCcEEEEecccc-cCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 999999999999888765 5699999999999999999999999999999999999999999999654468899999999
Q ss_pred HHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3431 487 REECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 528 (549)
Q Consensus 487 ~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e 528 (549)
...++++++||+++ +.++++++.++|++.+.++..+..+
T Consensus 547 ~~~l~~~~~~l~~~---~~~~~~~~~~~l~~~~~~~~~~~~~ 585 (599)
T TIGR01991 547 DAAMEALQKALQGD---DADAIKAAIEALEEATDNFAARRMD 585 (599)
T ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999975 6789999999999999999976554
No 14
>PRK01433 hscA chaperone protein HscA; Provisional
Probab=100.00 E-value=3.3e-86 Score=707.08 Aligned_cols=491 Identities=36% Similarity=0.548 Sum_probs=434.0
Q ss_pred CEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCCceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCCh---
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDP--- 78 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~--- 78 (549)
.+||||||||||+||++.+|.+++++|..|++.+||+|+|.++++++|..| +++++||++|+.+++.
T Consensus 20 ~viGIDlGTT~S~va~~~~~~~~ii~n~~g~~~tPS~V~f~~~~~~vG~~A----------ti~~~KrliG~~~~~~~~~ 89 (595)
T PRK01433 20 IAVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGNNK----------GLRSIKRLFGKTLKEILNT 89 (595)
T ss_pred eEEEEEcCcccEEEEEEeCCeeEEEECCCCCeecCeEEEEcCCCEEECchh----------hHHHHHHHhCCCchhhccc
Confidence 389999999999999999999999999999999999999998889999987 7899999999998752
Q ss_pred -HHHhhcccCCeEEeecCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHH
Q psy3431 79 -KIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKD 157 (549)
Q Consensus 79 -~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~ 157 (549)
.+....+.+ .. .+...+.+.+.+ ..++|+++++++|++|++.|+.++|.++.++|||||+||++.||+++++
T Consensus 90 ~~~~~~~k~~----~~-~~~~~~~~~~~~--~~~speei~a~iL~~lk~~ae~~lg~~v~~aVITVPa~f~~~qR~a~~~ 162 (595)
T PRK01433 90 PALFSLVKDY----LD-VNSSELKLNFAN--KQLRIPEIAAEIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVML 162 (595)
T ss_pred hhhHhhhhhe----ee-cCCCeeEEEECC--EEEcHHHHHHHHHHHHHHHHHHHhCCCcceEEEEECCCCCHHHHHHHHH
Confidence 222111111 11 122334455555 7899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHH
Q psy3431 158 AGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS 237 (549)
Q Consensus 158 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~ 237 (549)
||++||+++++||+||+|||++|++... ...++||||+||||||+|++++.++ .++|+++.||.++||.+||.+|++
T Consensus 163 Aa~~AGl~v~~li~EPtAAAlay~~~~~--~~~~vlV~DlGGGT~DvSi~~~~~~-~~~V~at~gd~~lGG~d~D~~l~~ 239 (595)
T PRK01433 163 AAKIAGFEVLRLIAEPTAAAYAYGLNKN--QKGCYLVYDLGGGTFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQ 239 (595)
T ss_pred HHHHcCCCEEEEecCcHHHHHHHhcccC--CCCEEEEEECCCCcEEEEEEEEeCC-eEEEEEEcCCcccChHHHHHHHHH
Confidence 9999999999999999999999998753 4678999999999999999999988 999999999999999999999999
Q ss_pred HHHHHHHhccc----cccccCC-------------------------------------------CCCChHHH-------
Q psy3431 238 HLAEEFKRKCR----SASDVGD-------------------------------------------HHGDAHFV------- 263 (549)
Q Consensus 238 ~l~~~~~~~~~----~~~e~~K-------------------------------------------~~~~i~~V------- 263 (549)
|++++|..... ..||++| ...+|+.|
T Consensus 240 ~~~~~~~~~~~~~~~~~~ekaK~~LS~~~~~~~~~~~itr~efe~l~~~l~~~~~~~i~~~L~~a~~~~Id~ViLvGGss 319 (595)
T PRK01433 240 YLCNKFDLPNSIDTLQLAKKAKETLTYKDSFNNDNISINKQTLEQLILPLVERTINIAQECLEQAGNPNIDGVILVGGAT 319 (595)
T ss_pred HHHHhcCCCCCHHHHHHHHHHHHhcCCCcccccceEEEcHHHHHHHHHHHHHHHHHHHHHHHhhcCcccCcEEEEECCcc
Confidence 99998854332 3466665 13456665
Q ss_pred ----HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEeccccceEEeeCCeeeEEEccCCCCC
Q psy3431 264 ----VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIP 339 (549)
Q Consensus 264 ----i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~~~~igi~~~~~~~~~li~~~~~lp 339 (549)
|++.|+++| +..+..++|||+|||+|||++|+.+++ ...++.+.|++|++||+++.+|.+.+|||||++||
T Consensus 320 riP~v~~~l~~~f-~~~~~~~~npdeaVA~GAAi~a~~l~~----~~~~~~l~Dv~p~slgi~~~~g~~~~ii~rnt~iP 394 (595)
T PRK01433 320 RIPLIKDELYKAF-KVDILSDIDPDKAVVWGAALQAENLIA----PHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIP 394 (595)
T ss_pred cChhHHHHHHHHh-CCCceecCCchHHHHHHHHHHHHHhhC----CccceEEEEecccceEEEecCCEEEEEEECCCccc
Confidence 999999999 466778999999999999999999986 23578899999999999999999999999999999
Q ss_pred cccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEEEEeCCCccEEEEEEecCCCCceeE
Q psy3431 340 CKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNI 419 (549)
Q Consensus 340 ~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~~~~d~~g~l~v~~~~~~t~~~~~i 419 (549)
+++++.|++..|+|+.+.|++|||++..+.+|..||+|.|.++|+.|+|.++|+|+|.+|.||+|+|++.+..||++..+
T Consensus 395 ~~~~~~f~t~~d~q~~v~i~v~qGe~~~~~~n~~lg~~~l~~i~~~~~g~~~i~vtf~id~~Gil~V~a~~~~t~~~~~~ 474 (595)
T PRK01433 395 ISVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDADGILSVSAYEKISNTSHAI 474 (595)
T ss_pred ceeeEEeEeecCCCeEEEEEEEeccccccCCCcEEEEEEEcCCCCCCCCCccEEEEEEECCCCcEEEEEEEcCCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhccCccChhHHHHHHHHHHHHHHHhhc
Q psy3431 420 TIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDN 499 (549)
Q Consensus 420 ~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~~~e~~~i~~~l~~~~~Wl~~ 499 (549)
.|... ..|+++|+++++++.+++..+|...+++.+++|++|++++.+++.+++....+++++|+.+.+.+++.++||+.
T Consensus 475 ~i~~~-~~ls~~ei~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~~~~~~~~~l~~ 553 (595)
T PRK01433 475 EVKPN-HGIDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEAEALIFNIERAIAELTTLLSESEISIINSLLDNIKEAVHA 553 (595)
T ss_pred EecCC-CCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHhc
Confidence 99765 46999999999999999999999999999999999999999999997533668899999999999999999985
Q ss_pred CCcCCHHHHHHHHHHHHHHHHH
Q psy3431 500 NTLADKEEYQDKLQQLQKSCMP 521 (549)
Q Consensus 500 ~~~a~~~~~~~kl~~L~~~~~~ 521 (549)
+ +...+++++++|+....+
T Consensus 554 ~---~~~~~~~~~~~~~~~~~~ 572 (595)
T PRK01433 554 R---DIILINNSIKEFKSKIKK 572 (595)
T ss_pred C---CHHHHHHHHHHHHHHHHH
Confidence 4 555666666666666666
No 15
>KOG0102|consensus
Probab=100.00 E-value=3.5e-88 Score=665.60 Aligned_cols=518 Identities=54% Similarity=0.860 Sum_probs=485.2
Q ss_pred CEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCC-ceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHH
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKI 80 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (549)
+|+|||+||||||+|++.++.+.++.|..|.|.+||+|+|..+ ++++|..|+++...+|.|+++.-||+||+.|.+|.+
T Consensus 28 ~vigidlgttnS~va~meg~~~kiienaegqrtTpsvva~~kdge~Lvg~~akrqav~n~~ntffatKrligRrf~d~ev 107 (640)
T KOG0102|consen 28 KVIGIDLGTTNSCVAVMEGKKPKIIENAEGQRTTPSVVAFTKDGERLVGMPAKRQAVTNPENTFFATKRLIGRRFDDPEV 107 (640)
T ss_pred ceeeEeeeccceeEEEEeCCCceEeecccccccCCceEEEeccccEEecchhhhhhccCCCceEEEehhhhhhhccCHHH
Confidence 4899999999999999999999999999999999999999655 999999999999999999999999999999999999
Q ss_pred HhhcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH
Q psy3431 81 QQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (549)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa 159 (549)
+.+++..||+++. .++...+.. .| ..++|.++.+++|.+++++|+++++..+..+|+||||||++.||+++++|.
T Consensus 108 q~~~k~vpyKiVk~~ngdaw~e~--~G--~~~spsqig~~vl~kmk~tae~yl~~~v~~avvtvpAyfndsqRqaTkdag 183 (640)
T KOG0102|consen 108 QKDIKQVPYKIVKASNGDAWVEA--RG--KQYSPSQIGAFVLMKMKETAEAYLGKKVKNAVITVPAYFNDSQRQATKDAG 183 (640)
T ss_pred HHHHHhCCcceEEccCCcEEEEe--CC--eEecHHHHHHHHHHHHHHHHHHHcCchhhheeeccHHHHhHHHHHHhHhhh
Confidence 9999999999997 566666555 56 899999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHH
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 239 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l 239 (549)
++||++++++|+||+|||++|+++.. ....++|||+||||||++|+.+.+| .|++.++.||.++||++||..+++|+
T Consensus 184 ~iagl~vlrvineptaaalaygld~k--~~g~iaV~dLgggtfdisilei~~g-vfevksTngdtflggedfd~~~~~~~ 260 (640)
T KOG0102|consen 184 QIAGLNVLRVINEPTAAALAYGLDKK--EDGVIAVFDLGGGTFDISILEIEDG-VFEVKSTNGDTHLGGEDFDNALVRFI 260 (640)
T ss_pred hhccceeeccCCccchhHHhhccccc--CCCceEEEEcCCceeeeeeehhccc-eeEEEeccCccccChhHHHHHHHHHH
Confidence 99999999999999999999999976 3789999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHhccc--------------cccccCC--------------------------------------------------
Q psy3431 240 AEEFKRKCR--------------SASDVGD-------------------------------------------------- 255 (549)
Q Consensus 240 ~~~~~~~~~--------------~~~e~~K-------------------------------------------------- 255 (549)
...|+...+ +++|++|
T Consensus 261 v~~fk~~~gidl~kd~~a~qrl~eaaEkaKielSs~~~tei~lp~iTada~gpkh~~i~~tr~efe~~v~~lI~Rti~p~ 340 (640)
T KOG0102|consen 261 VSEFKKEEGIDLTKDRMALQRLREAAEKAKIELSSRQQTEINLPFITADASGPKHLNIELTRGEFEELVPSLIARTIEPC 340 (640)
T ss_pred HHhhhcccCcchhhhHHHHHHHHHHHHhhhhhhhhcccceeccceeeccCCCCeeEEEeecHHHHHHhhHHHHHhhhhHH
Confidence 999987655 6777777
Q ss_pred ---------CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEec
Q psy3431 256 ---------HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVT 315 (549)
Q Consensus 256 ---------~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~ 315 (549)
+.+||++| +++.+++.| ++.+...+||||+||.|||++++.+++ .++++.+.|++
T Consensus 341 ~~aL~dA~~~~~di~EV~lvggmtrmpkv~s~V~e~f-gk~p~~~vnPdeava~GAaiqggvl~g----eVkdvlLLdVt 415 (640)
T KOG0102|consen 341 KKALRDASLSSSDINEVILVGGMTRMPKVQSTVKELF-GKGPSKGVNPDEAVAGGAAIQGGVLSG----EVKDVLLLDVT 415 (640)
T ss_pred HHHHHhccCChhhhhhhhhhcchhhcHHHHHHHHHHh-CCCCCCCcCCcchhccchhhccchhhc----cccceeeeecc
Confidence 55788888 999999999 678889999999999999999999998 78999999999
Q ss_pred cccceEEeeCCeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEE
Q psy3431 316 PLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVT 395 (549)
Q Consensus 316 ~~~igi~~~~~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~ 395 (549)
|+++|++..+|.|..|||+|+.||++++..|.+..|+|+.++|+++||++....+|..+|+|.+.|+||.|+|.|+|.|+
T Consensus 416 pLsLgietlggvft~Li~rnttIptkksqvfstaadgqt~V~ikv~qgere~~~dnk~lG~f~l~gipp~pRgvpqieVt 495 (640)
T KOG0102|consen 416 PLSLGIETLGGVFTKLIPRNTTIPTKKSQVFSTAADGQTQVEIKVFQGEREMVNDNKLLGSFILQGIPPAPRGVPQIEVT 495 (640)
T ss_pred hHHHHHHhhhhhheecccCCcccCchhhhheeecccCCceEEEEeeechhhhhccCcccceeeecccCCCCCCCCceeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Q psy3431 396 FDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAG 475 (549)
Q Consensus 396 ~~~d~~g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~ 475 (549)
|.+|.||+++|+|.++.|||.+++++... ++||++|+++|+.+.+++...|+.++++.+..|..++++|.....+.+..
T Consensus 496 fDIdanGI~~vsA~dk~t~K~qsi~i~~s-ggLs~~ei~~mV~eaer~~~~d~~~~~~ie~~nka~s~~~~te~~~~~~~ 574 (640)
T KOG0102|consen 496 FDIDANGIGTVSAKDKGTGKSQSITIASS-GGLSKDEIELMVGEAERLASTDKEKREAIETKNKADSIIYDTEKSLKEFE 574 (640)
T ss_pred EeecCCceeeeehhhcccCCccceEEeec-CCCCHHHHHHHHHHHHHHHhhhHHHHHHhhhhcchhheecCchhhhhhhh
Confidence 99999999999999999999999999887 55999999999999999999999999999999999999999999887766
Q ss_pred CccChhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy3431 476 NKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGG 532 (549)
Q Consensus 476 ~~~~~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~ 532 (549)
..++.++..+|...+..+.+.+..-...+.++++.+...|++...|++.-++..++.
T Consensus 575 ~~~~~~~~~~i~~~i~~l~~~~~~~~~~~~~~~k~~~~~l~q~~lkl~es~~k~~~~ 631 (640)
T KOG0102|consen 575 EKIPAEECEKLEEKISDLRELVANKDSGDMEEIKKAMSALQQASLKLFESAYKNMGA 631 (640)
T ss_pred hhCcHHHHHHHHHHHHHHHHHHhhhccCChhhHHHHHHHHHHhhhHHHHHHHhhhcc
Confidence 777777778999999999988874333355899999999999999999888776544
No 16
>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins. Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....
Probab=100.00 E-value=1e-84 Score=713.08 Aligned_cols=517 Identities=49% Similarity=0.846 Sum_probs=470.2
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCCceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHHHh
Q psy3431 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKIQQ 82 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~~~ 82 (549)
||||||||+||+||++++|.+++|.|..|+|++||+|+|.++++++|..|...+.++|+++++++|||||+.++++.++.
T Consensus 1 viGID~Gt~~~~va~~~~~~~~ii~~~~~~~~~ps~v~~~~~~~~~G~~a~~~~~~~~~~~~~~~k~liG~~~~~~~~~~ 80 (602)
T PF00012_consen 1 VIGIDLGTTNSKVAVFKNGKPEIILNEEGKRKTPSVVSFSDNERLVGEDAKSQMIRNPKNTIYNLKRLIGRKFDDPDVQK 80 (602)
T ss_dssp EEEEEE-SSEEEEEEEETTEEEEE--TTS-SSEESEEEEESSCEEETHHHHHTTTTSGGGEEESGGGTTTSBTTSHHHHH
T ss_pred CEEEEeccCCEEEEEEEeccccccccccccccccceeeEeeecccCCcchhhhcccccccccccccccccccccccccch
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHHH
Q psy3431 83 DMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAI 161 (549)
Q Consensus 83 ~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~~ 161 (549)
..+.+||.+.. .++...+.+.+.|+...++|+++++++|++|++.++.+++..+.++|||||++|++.||+++++||+.
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~a~~~~~~~~~~~vitVPa~~~~~qr~~~~~Aa~~ 160 (602)
T PF00012_consen 81 EKKKFPYKVVEDPDGKVYFEVDYDGKSKTYSPEELSAMILKYLKEMAEKYLGEKVTDVVITVPAYFTDEQRQALRDAAEL 160 (602)
T ss_dssp HHTTSSSEEEEETTTEEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHTSBEEEEEEEE-TT--HHHHHHHHHHHHH
T ss_pred hhhcccccccccccccccccccccccceeeeeecccccchhhhcccchhhcccccccceeeechhhhhhhhhcccccccc
Confidence 99999999986 48888999998888789999999999999999999999999999999999999999999999999999
Q ss_pred cCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHH
Q psy3431 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241 (549)
Q Consensus 162 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~ 241 (549)
|||++++||+||+|||++|++.+.. .++++||||+||||+|+|++++.++ .++++++.++..+||.+||.+|++|+.+
T Consensus 161 agl~~~~li~Ep~Aaa~~y~~~~~~-~~~~vlv~D~Gggt~dvs~~~~~~~-~~~v~~~~~~~~lGG~~~D~~l~~~~~~ 238 (602)
T PF00012_consen 161 AGLNVLRLINEPTAAALAYGLERSD-KGKTVLVVDFGGGTFDVSVVEFSNG-QFEVLATAGDNNLGGRDFDEALAEYLLE 238 (602)
T ss_dssp TT-EEEEEEEHHHHHHHHTTTTSSS-SEEEEEEEEEESSEEEEEEEEEETT-EEEEEEEEEETTCSHHHHHHHHHHHHHH
T ss_pred cccccceeecccccccccccccccc-cccceeccccccceEeeeehhcccc-cccccccccccccccceecceeeccccc
Confidence 9999999999999999999988763 6899999999999999999999999 9999999999999999999999999999
Q ss_pred HHHhccc--------------cccccCC----------------------------------------------------
Q psy3431 242 EFKRKCR--------------SASDVGD---------------------------------------------------- 255 (549)
Q Consensus 242 ~~~~~~~--------------~~~e~~K---------------------------------------------------- 255 (549)
+|+.+++ .+||++|
T Consensus 239 ~~~~~~~~d~~~~~~~~~~L~~~~e~~K~~Ls~~~~~~~~~~~~~~~~~~~~~~~~itr~~fe~l~~~~~~~~~~~i~~~ 318 (602)
T PF00012_consen 239 KFKKKYKIDLRENPRAMARLLEAAEKAKEQLSSNDNTEITISIESLYDDGEDFSITITREEFEELCEPLLERIIEPIEKA 318 (602)
T ss_dssp HHHHHHSS-GTCSHHHHHHHHHHHHHHHHHTTTSSSSEEEEEEEEEETTTEEEEEEEEHHHHHHHTHHHHHHTHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccceecccccccccccccccccc
Confidence 9987743 5677777
Q ss_pred ------CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEecccc
Q psy3431 256 ------HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLS 318 (549)
Q Consensus 256 ------~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~~~~ 318 (549)
+.++|+.| ||+.|++.|+ ..+..++||++|||+|||++|+.+++ .++.+++.+.|++|++
T Consensus 319 l~~~~~~~~~i~~V~lvGG~sr~p~v~~~l~~~f~-~~~~~~~~p~~aVA~GAa~~a~~~~~--~~~~~~~~~~d~~~~~ 395 (602)
T PF00012_consen 319 LKDAGLKKEDIDSVLLVGGSSRIPYVQEALKELFG-KKISKSVNPDEAVARGAALYAAILSG--SFRVKDIKIIDVTPFS 395 (602)
T ss_dssp HHHTT--GGGESEEEEESGGGGSHHHHHHHHHHTT-SEEB-SS-TTTHHHHHHHHHHHHHHT--SCSSTSSCESEBESSE
T ss_pred cccccccccccceeEEecCcccchhhhhhhhhccc-cccccccccccccccccccchhhhcc--cccccccccccccccc
Confidence 22333433 9999999996 77888999999999999999999998 6778889999999999
Q ss_pred ceEEeeCCeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEEEEe
Q psy3431 319 LGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDL 398 (549)
Q Consensus 319 igi~~~~~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~~~~ 398 (549)
|||+..++.+.+++|+|+++|...+..|++..++|+.+.|.+|+|++....+|..||++.|.++++.+.|.++|+++|++
T Consensus 396 ~~i~~~~~~~~~ii~~~t~iP~~~~~~~~t~~~~~~~i~i~i~~g~~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~f~l 475 (602)
T PF00012_consen 396 IGIEVSNGKFSKIIPKNTPIPSKKSKSFKTVTDNQTSISIDIYEGESSSFEDNKKIGSYTISGIPPAPKGKPKIKVTFEL 475 (602)
T ss_dssp EEEEETTTEEEEEESTTEBSSEEEEEEEEESSTTCSEEEEEEEESSSSBGGGSEEEEEEEEES-SSSSTTSSEEEEEEEE
T ss_pred ccccccccccccccccccccccccccccchhccccccccceeeeccccccccccccccccccccccccccccceeeEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhccCcc
Q psy3431 399 DANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKL 478 (549)
Q Consensus 399 d~~g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~ 478 (549)
|.||+|+|++.+..++....+++..... +++++++++.++++++...|+.++++.+++|+||+++|++|+.+++....+
T Consensus 476 d~~Gil~V~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~~d~~~~~~~e~kn~lE~~i~~~r~~l~~~~~~~ 554 (602)
T PF00012_consen 476 DENGILSVEAAEVETGKEEEVTVKKKET-LSKEEIEELKKKLEEMDEEDEERRERAEAKNELESYIYELRDKLEEDKDFV 554 (602)
T ss_dssp ETTSEEEEEEEETTTTEEEEEEEESSSS-SCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCGGGS
T ss_pred eeeeehhhhhcccccccccccccccccc-cccccccccccccchhhhhhhhhhhccccHHHHHHHHHHHHHHHHhhhccC
Confidence 9999999999999999888888887754 999999999999999999999999999999999999999999998766666
Q ss_pred ChhHHHHHHHHHHHHHHHhhcC-CcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3431 479 TESEKSRCREECDATLKWLDNN-TLADKEEYQDKLQQLQKSCMPLMSKMHG 528 (549)
Q Consensus 479 ~~~e~~~i~~~l~~~~~Wl~~~-~~a~~~~~~~kl~~L~~~~~~i~~r~~e 528 (549)
+++++ .+.+++..+||+++ .+++.++|++|+++|++..+||..|+++
T Consensus 555 ~~~~~---~~~l~~~~~wl~~~~~~~~~~e~~~kl~~L~~~~~~i~~r~~~ 602 (602)
T PF00012_consen 555 SEEEK---KKKLKETSDWLEDNGEDADKEEYKEKLEELKKVIEPIKKRYMQ 602 (602)
T ss_dssp THHHH---HHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CHHHH---HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66666 78899999999976 4678999999999999999999999864
No 17
>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.6e-81 Score=664.26 Aligned_cols=491 Identities=58% Similarity=0.865 Sum_probs=456.6
Q ss_pred CEEEEEcCccceEEEEEECC-eEEEEeCCCCCccceeEEEEeCC-ceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChH
Q psy3431 2 PAIGIDLGTTYSCVAVFQQG-KVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPK 79 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g-~~~ii~~~~g~~~~Ps~v~~~~~-~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (549)
.+|||||||||||||+++++ .+.++.|..|.|.+||+|+|..+ ++++|..|+.++..+|.++++.+||++|+.-.
T Consensus 6 ~~iGIDlGTTNS~vA~~~~~~~~~vi~n~~g~r~~PSvv~f~~~~~~~vG~~A~~q~~~~p~~t~~~~kr~~G~~~~--- 82 (579)
T COG0443 6 KAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVDNPENTIFSIKRKIGRGSN--- 82 (579)
T ss_pred eEEEEEcCCCcEEEEEEeCCCCceEecCCCCCcccceEEEECCCCCEEecHHHHHHhhhCCcceEEEEehhcCCCCC---
Confidence 48999999999999999988 79999999999999999999977 59999999999999999999999999998711
Q ss_pred HHhhcccCCeEEeecCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH
Q psy3431 80 IQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (549)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa 159 (549)
...+.+...| +.++|+++++++|+++++.|+.+++..+.++|||||+||++.||+++++|+
T Consensus 83 -----------------~~~~~~~~~~--~~~~~eeisa~~L~~lk~~ae~~lg~~v~~~VItVPayF~d~qR~at~~A~ 143 (579)
T COG0443 83 -----------------GLKISVEVDG--KKYTPEEISAMILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAA 143 (579)
T ss_pred -----------------CCcceeeeCC--eeeCHHHHHHHHHHHHHHHHHHhhCCCcceEEEEeCCCCCHHHHHHHHHHH
Confidence 1112344455 789999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHH
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 239 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l 239 (549)
++|||++++|++||+|||++|++... .+.+|||||+||||||+|++++..| .++++++.||.++||++||.+|.+|+
T Consensus 144 ~iaGl~vlrlinEPtAAAlayg~~~~--~~~~vlV~DlGGGTfDvSll~~~~g-~~ev~at~gd~~LGGddfD~~l~~~~ 220 (579)
T COG0443 144 RIAGLNVLRLINEPTAAALAYGLDKG--KEKTVLVYDLGGGTFDVSLLEIGDG-VFEVLATGGDNHLGGDDFDNALIDYL 220 (579)
T ss_pred HHcCCCeEEEecchHHHHHHhHhccC--CCcEEEEEEcCCCCEEEEEEEEcCC-EEEEeecCCCcccCchhHHHHHHHHH
Confidence 99999999999999999999999976 7899999999999999999999988 99999999999999999999999999
Q ss_pred HHHHHhccc--------------cccccCC--------------------------------------------------
Q psy3431 240 AEEFKRKCR--------------SASDVGD-------------------------------------------------- 255 (549)
Q Consensus 240 ~~~~~~~~~--------------~~~e~~K-------------------------------------------------- 255 (549)
.++|+.+.+ .+||++|
T Consensus 221 ~~~f~~~~~~d~~~~~~~~~rL~~~ae~aK~~LS~~~~~~i~~~~~~~~~~~~~~ltR~~~E~l~~dll~r~~~~~~~al 300 (579)
T COG0443 221 VMEFKGKGGIDLRSDKAALQRLREAAEKAKIELSSATQTSINLPSIGGDIDLLKELTRAKFEELILDLLERTIEPVEQAL 300 (579)
T ss_pred HHHhhccCCccccccHHHHHHHHHHHHHHHHHcccccccccchhhccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999988874 5677777
Q ss_pred -----CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEeccccc
Q psy3431 256 -----HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSL 319 (549)
Q Consensus 256 -----~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~~~~~i 319 (549)
+..+|+.| |++.++++|+ +.+..++||||+||+|||++|+.+++ ..+++.+.|++|+++
T Consensus 301 ~~a~l~~~~I~~VilvGGstriP~V~~~v~~~f~-~~~~~~inpdeava~GAa~qa~~l~~----~~~d~ll~Dv~plsl 375 (579)
T COG0443 301 KDAGLEKSDIDLVILVGGSTRIPAVQELVKEFFG-KEPEKSINPDEAVALGAAIQAAVLSG----EVPDVLLLDVIPLSL 375 (579)
T ss_pred HHcCCChhhCceEEEccceeccHHHHHHHHHHhC-ccccccCCccHHHHHHHHHHHHhhcC----cccCceEEeeeeecc
Confidence 33344444 9999999995 88899999999999999999999998 233889999999999
Q ss_pred eEEeeCCeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEEEecCCCCCCCCCCeEEEEEEeC
Q psy3431 320 GIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLD 399 (549)
Q Consensus 320 gi~~~~~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~~i~~i~~~~~g~~~i~v~~~~d 399 (549)
|++..++.+.++|++|+.+|.++...|.+..|+|+.+.+++++|++....+|..+|.|.+.++|+.++|.++|+++|.+|
T Consensus 376 gie~~~~~~~~ii~rn~~iP~~~~~~f~t~~d~q~~~~i~v~qge~~~~~~~~~lg~f~l~~i~~~~~g~~~i~v~f~iD 455 (579)
T COG0443 376 GIETLGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIPPAPRGVPQIEVTFDID 455 (579)
T ss_pred ccccCcchhhhHHhcCCCCCcccceEEEeecCCCceeEEEEEecchhhcccCceeEEEECCCCCCCCCCCCceEEEeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhccCccC
Q psy3431 400 ANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLT 479 (549)
Q Consensus 400 ~~g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~ 479 (549)
.||++.|++.+..+|+...++|....+ |+++++++|.+....+.+.|+..++..+.+|..+++++.++..|.+.. .++
T Consensus 456 ~~gi~~v~a~~~~~~k~~~i~i~~~~~-ls~~~i~~~~~~a~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 533 (579)
T COG0443 456 ANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEANAALDKKFRELVEARNEAESLIYSLEKALKEIV-KVS 533 (579)
T ss_pred CCcceEeeeecccCCceEEEEEecCCC-CCHHHHHHHHHHHHHHHhhHHHHHHHHHhhHHHHHHHHHHHHHHhhhc-cCC
Confidence 999999999999999999999999876 999999999999999999999999999999999999999999998766 788
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3431 480 ESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 528 (549)
Q Consensus 480 ~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e 528 (549)
+++++++.+.+.+++.||+. + .++++.+.++|+...+++..++++
T Consensus 534 ~~~~~~~~~~~~~~~~~l~~-~---~~~~~~~~~~l~~~~~~~~~~~~~ 578 (579)
T COG0443 534 EEEKEKIEEAITDLEEALEG-E---KEEIKAKIEELQEVTQKLAEKKYQ 578 (579)
T ss_pred HHHHHHHHHHHHHHHHHHhc-c---HHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998 2 889999999999999999988764
No 18
>KOG0103|consensus
Probab=100.00 E-value=1.1e-81 Score=638.02 Aligned_cols=519 Identities=36% Similarity=0.588 Sum_probs=468.2
Q ss_pred CCEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCCceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHH
Q psy3431 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKI 80 (549)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (549)
|+|+|||||..||.+|+.+.+.+++|.|+.|+|.||++|+|.+..|++|.+|..+..+++.|++..+||++|+.|++|.+
T Consensus 1 msvvG~D~Gn~nc~iavAr~~gIe~i~nd~Snr~TPa~vsfg~K~R~~G~aak~~~~~n~kntv~~~KRl~Gr~f~dP~~ 80 (727)
T KOG0103|consen 1 MSVVGFDLGNENCYIAVARQGGIEVVANDYSNRETPAIVSFGPKNRFIGVAAKNQQTTNVKNTVSNFKRLIGRKFSDPEV 80 (727)
T ss_pred CCceeeeccccceeeeeeccCCceeeeeccccccCcceeeeccccceeeeccccceeecccccchhhhhhhccccCChHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH
Q psy3431 81 QQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (549)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa 159 (549)
|...+.+|+.++. .+|...+.+.|.|+.+.++|++|++|+|.+++..|+..+..++.+|||+||+||++.||+++.+||
T Consensus 81 q~~~~~~~~~vv~~~dg~vgi~v~ylge~~~ft~~Qv~Am~l~klk~~ae~~l~~~v~DcvIavP~~FTd~qRravldAA 160 (727)
T KOG0103|consen 81 QREIKSLPRSVVQLKDGDVGIKVEYLGEKHPFTPEQVLAMLLTKLKATAEKNLKSPVSDCVIAVPSYFTDSQRRAVLDAA 160 (727)
T ss_pred hhcccccchheeecCCCCcceeehcccCCCCCChHHHHHHHHHHHHHHHHHhcCCCCCCeeEeccccccHHHHHHHHhHH
Confidence 9999999999996 799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCC-----CCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHH
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLK-----GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 234 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~-----~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~ 234 (549)
++|||++++|++|.+|+|++||+.+..- .+.+++++|+|++++.+|++.|..| .+.++++.+|.++||++||++
T Consensus 161 ~iagLn~lrLmnd~TA~Al~ygiyKtDLP~~~ekpr~v~fvD~GHS~~q~si~aF~kG-~lkvl~ta~D~~lGgr~fDe~ 239 (727)
T KOG0103|consen 161 RIAGLNPLRLMNDTTATALAYGIYKTDLPENEEKPRNVVFVDIGHSSYQVSIAAFTKG-KLKVLATAFDRKLGGRDFDEA 239 (727)
T ss_pred hhcCccceeeeecchHhHhhcccccccCCCcccCcceEEEEecccccceeeeeeeccC-cceeeeeecccccccchHHHH
Confidence 9999999999999999999999987532 4688999999999999999999999 999999999999999999999
Q ss_pred HHHHHHHHHHhccc--------------cccccCC---------------------------------------------
Q psy3431 235 LVSHLAEEFKRKCR--------------SASDVGD--------------------------------------------- 255 (549)
Q Consensus 235 l~~~l~~~~~~~~~--------------~~~e~~K--------------------------------------------- 255 (549)
|.+|++++|+.+++ .+||++|
T Consensus 240 L~~hfa~efk~kykidv~sn~kA~lRL~~~~EKlKK~lSAN~~~plNIEcfM~d~dvs~~i~ReEfEel~~plL~rv~~p 319 (727)
T KOG0103|consen 240 LIDHFAKEFKTKYKIDVRSNAKAKLRLLAECEKLKKVLSANTELPLNIECFMNDKDVSSKIKREEFEELSAPLLERVEVP 319 (727)
T ss_pred HHHHHHHHhccccccchhhchhHHHHHHHHHHHHHHHhhcCcCCCcchhheeecchhhhhccHHHHHHHHHHHHHhhhHH
Confidence 99999999999987 5677777
Q ss_pred ----------CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcccceeEEEEe
Q psy3431 256 ----------HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDV 314 (549)
Q Consensus 256 ----------~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~~~~~~~~d~ 314 (549)
+.+||+.| |++.|.++| ++.+.+++|.|||||+|||+++|++|+ .++++++.+.|+
T Consensus 320 ~~~~l~d~~l~~edi~~VEiVGg~sripaike~Is~~F-gke~s~TlN~dEavarG~ALqcAIlSP--~frVRef~v~Di 396 (727)
T KOG0103|consen 320 LLKALADAKLKVEDIHAVEIVGGLSRIPAIKEMISDFF-GKELSRTLNQDEAVARGAALQCAILSP--TFRVREFSVEDI 396 (727)
T ss_pred HHHHHHHhcCccccceeEEEecCcccchHHHHHHHHHh-CCcccccccHHHHHHHhHHHHHHhcCc--cccceecceecc
Confidence 44556555 999999999 789999999999999999999999999 899999999999
Q ss_pred ccccceEEeeC-----CeeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecC-cccccCCceeeEEEecCCCCCCCC
Q psy3431 315 TPLSLGIETAG-----GVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGE-RAMTKDNNLLGTFDLTGIPPAPRG 388 (549)
Q Consensus 315 ~~~~igi~~~~-----~~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge-~~~~~~~~~ig~~~i~~i~~~~~g 388 (549)
.||+|.+.+.. +....+||+|.++|+++..+|... ..|.+.++++. ..++.....|+++.+.++.+...|
T Consensus 397 ~pysIs~~w~~~~ed~~~~~evF~~~~~~p~~K~lT~~Rk----~~F~lea~yt~~~~lp~~~~kI~~~~i~~v~~~~~g 472 (727)
T KOG0103|consen 397 VPYSISLRWVKQGEDGGSVTEVFPKGHPSPSVKLLTFNRK----GPFTLEAKYTKVNKLPYPKPKIEKWTITGVTPSEDG 472 (727)
T ss_pred cceeEEEEeccccccCCCceeeecCCCCCCCceEEEEEec----CceEEEEEeccccccCCCCCceeeEEecccccCccc
Confidence 99999998652 455789999999999999999773 35889887776 456655678999999998876664
Q ss_pred -CCeEEEEEEeCCCccEEEEEEec----------------------------CCCC----ceeEEEecC-CCCCCHHHHH
Q psy3431 389 -VPKIDVTFDLDANGILNVTAKDT----------------------------SSGK----SQNITIKND-KGRLSKEEID 434 (549)
Q Consensus 389 -~~~i~v~~~~d~~g~l~v~~~~~----------------------------~t~~----~~~i~i~~~-~~~ls~eei~ 434 (549)
..+++|...++.+|+++|...-. ..++ ...+++... .+.|+..+++
T Consensus 473 e~skVKvkvr~n~~Gi~~i~sA~~~e~~~veev~~~~~e~~~~~~~~~~~~~~~~k~kvk~~~L~~~~~~~~~l~~~~l~ 552 (727)
T KOG0103|consen 473 EFSKVKVKVRLNEHGIDTIESATLIEDIEVEEVPEEPMEYDDAAKMLERIAPAENKKKVKKVDLPIEAYTKGALITDELE 552 (727)
T ss_pred cccceeEEEEEcCccceeeecceeecccchhccccchhhhhcchhhhhhhccccccceeeeccccceeeeccccCHHHHH
Confidence 46799999999999999865310 0011 112233322 2569999999
Q ss_pred HHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhcc-CccChhHHHHHHHHHHHHHHHhhcC-CcCCHHHHHHHH
Q psy3431 435 RMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAG-NKLTESEKSRCREECDATLKWLDNN-TLADKEEYQDKL 512 (549)
Q Consensus 435 ~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~-~~~~~~e~~~i~~~l~~~~~Wl~~~-~~a~~~~~~~kl 512 (549)
..++++.+|..+|+...++.+++|.||+|||.||++|.+.+ ++++++++++|...|+++++|||++ ++.+...|..||
T Consensus 553 ~~~e~E~~M~~qD~~~~Et~D~KNaleeyVY~~R~kl~~~y~~f~~~a~~e~~~~~l~~~E~wlyedGed~~k~~Y~~kl 632 (727)
T KOG0103|consen 553 LYIEKENKMILQDKLEKETVDAKNALEEYVYDMRDKLSDKYEDFITDAEREKLKKMLTDTEEWLYEDGEDQTKAVYVAKL 632 (727)
T ss_pred HHHHHHHHhhhhhhhhhhhccHHHHHHHHHHHHHHHhhhhhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccchHHHHHHH
Confidence 99999999999999999999999999999999999999888 8899999999999999999999965 689999999999
Q ss_pred HHHHHHHHHHHHHHhcC
Q psy3431 513 QQLQKSCMPLMSKMHGG 529 (549)
Q Consensus 513 ~~L~~~~~~i~~r~~e~ 529 (549)
.+|+..++ ..|+.+.
T Consensus 633 ~elk~~g~--~~r~~e~ 647 (727)
T KOG0103|consen 633 EELKKLGD--KKRFDEN 647 (727)
T ss_pred HHHHhhhh--hhhhhhh
Confidence 99999997 5565553
No 19
>KOG0104|consensus
Probab=100.00 E-value=3e-69 Score=548.15 Aligned_cols=517 Identities=30% Similarity=0.476 Sum_probs=447.7
Q ss_pred CEEEEEcCccceEEEEEECCeE-EEEeCCCCCccceeEEEEeCCceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHH
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKV-EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKI 80 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~-~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (549)
+|++||+||.+++||+.++|.| +|+.|..++|++|++|+|.+++|+||++|..+..++|++++.+++.|+|++..+|.+
T Consensus 23 AvmsVDlGse~~Kv~vVkPGvPmeIvLn~esrRKtp~~vafk~~eR~fg~~A~~ma~r~P~~~~~~l~~llgk~~~~~~v 102 (902)
T KOG0104|consen 23 AVMSVDLGSEWIKVAVVKPGVPMEIVLNKESRRKTPSIVAFKGGERIFGEAAASMATRFPQSTYRQLKDLLGKSLDDPTV 102 (902)
T ss_pred hheeeecccceeEEEEecCCCCeEEeechhhcccCcceEEecCCceehhhhhhhhhhcCcHHHHHHHHHHhCcccCCcHH
Confidence 6899999999999999999975 999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH
Q psy3431 81 QQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (549)
Q Consensus 81 ~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa 159 (549)
+.+.+++|+.-.. ++.+..+.+.+++ ...|++|+++||+|.+.+..|+.+...++.++|||||.||++.||+++.+||
T Consensus 103 ~ly~~~~p~~e~v~d~~rstV~F~i~d-~~~ysvEellAMil~~a~~~ae~~a~~~Ikd~ViTVP~~F~qaeR~all~Aa 181 (902)
T KOG0104|consen 103 DLYQKRFPFFELVEDPQRSTVVFKISD-QEEYSVEELLAMILQYAKSLAEEYAKQPIKDMVITVPPFFNQAERRALLQAA 181 (902)
T ss_pred HHHHhcCCceeecccCccceEEEEeCC-ccccCHHHHHHHHHHHHHHHHHHHHhcchhheEEeCCcccCHHHHHHHHHHH
Confidence 9999999887664 4468888888777 4799999999999999999999999999999999999999999999999999
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCC---CCCceEEEEEcCCCceeeeEEEee------CC---cEEEEEEecCCCCCC
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNL---KGERNVLIFDLGGGTFDVSILSID------EG---ALFEVRSTAGDTHLG 227 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~---~~~~~vlv~D~Gggt~dvsv~~~~------~~---~~~~v~~~~~d~~lG 227 (549)
++||++++.||+|.+||||.|++.+.. ..++++||||||+|++.++++.+. .| ..+++++.++|..||
T Consensus 182 ~iagl~vLqLind~~a~Al~ygv~rRk~i~~~~q~~i~YDMGs~sT~Ativsy~~v~~k~~g~~~p~i~~~gvGfd~tLG 261 (902)
T KOG0104|consen 182 QIAGLNVLQLINDGTAVALNYGVFRRKEINETPQHYIFYDMGSGSTSATIVSYQLVKTKEQGGKQPQIQVLGVGFDRTLG 261 (902)
T ss_pred HhcCchhhhhhccchHHHhhhhhhccccCCCCceEEEEEecCCCceeEEEEEEEeeccccccCccceEEEEeeccCCccc
Confidence 999999999999999999999998642 368999999999999999999984 11 379999999999999
Q ss_pred cchHHHHHHHHHHHHHHhccc----------------cccccCC------------------------------------
Q psy3431 228 GEDFDNRLVSHLAEEFKRKCR----------------SASDVGD------------------------------------ 255 (549)
Q Consensus 228 G~~iD~~l~~~l~~~~~~~~~----------------~~~e~~K------------------------------------ 255 (549)
|..|..+|.+||.+.|.++++ ++++++|
T Consensus 262 G~e~~~rLr~~l~~~F~~~~k~~~dv~~nprAmaKl~keA~R~K~vLSANsea~aqIEsL~ddiDFr~kvTRe~fEelc~ 341 (902)
T KOG0104|consen 262 GLEMTMRLRDHLANEFNEQHKTKKDVHTNPRAMAKLNKEAERLKQVLSANSEAFAQIESLIDDIDFRLKVTREEFEELCA 341 (902)
T ss_pred hHHHHHHHHHHHHHHHHHhcCCccccccCHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHhhccccccceeHHHHHHHHH
Confidence 999999999999999998876 6677777
Q ss_pred -------------------CCCChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcCCCCcc
Q psy3431 256 -------------------HHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSA 305 (549)
Q Consensus 256 -------------------~~~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~~~~~~ 305 (549)
+.++|+.| ||+.|.++.+..++.+++|+|||+++||+++||.||. .|+
T Consensus 342 Dl~~r~~~Pi~dAl~~a~l~ldeIn~ViL~Gg~TRVP~VQe~l~k~v~~~ei~knlNaDEA~vmGav~~aA~LSk--sFK 419 (902)
T KOG0104|consen 342 DLEERIVEPINDALKKAQLSLDEINQVILFGGATRVPKVQETLIKAVGKEELGKNLNADEAAVMGAVYQAAHLSK--SFK 419 (902)
T ss_pred HHHHhhhhhHHHHHHhcCCChhhhheeEEecCcccCchHHHHHHHHHhHHHHhcccChhHHHHHHHHHHHHhhcc--ccc
Confidence 55666666 9999999999899999999999999999999999998 999
Q ss_pred cceeEEEEeccccceEEeeCC--------eeeEEEccCCCCCcccceeeeeccCCCCcEEEEEeecCcccccCCceeeEE
Q psy3431 306 IQDVLLVDVTPLSLGIETAGG--------VMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTF 377 (549)
Q Consensus 306 ~~~~~~~d~~~~~igi~~~~~--------~~~~li~~~~~lp~~~~~~~~~~~~~q~~~~i~iy~ge~~~~~~~~~ig~~ 377 (549)
++++.+.|.++|+|-++..+. ....+|++|.++|..+.++|+.++|+ |.+.+-.|.-. .-+-++
T Consensus 420 vKpf~V~D~~~yp~~v~f~~~~~i~~~k~~~~~lf~~~~~yPnk~vi~~~~ysdd---f~~~~n~~~~~-----~nl~~v 491 (902)
T KOG0104|consen 420 VKPFNVVDASVYPYLVEFETEPGIHALKSVKRDLFARMSPYPNKKVITFTSYSDD---FPFNINYGDLG-----QNLTTV 491 (902)
T ss_pred ccceeeeecccccEEEEeccCCcccccchhHHHHHhcCCcCCCcceeeccccCCc---cccccchhhhc-----cCccEE
Confidence 999999999999988875432 23458999999999998888877765 55554433210 123477
Q ss_pred EecCCCCCC----C---CCCeEEEEEEeCCCccEEEEEEec------------------C---C----------------
Q psy3431 378 DLTGIPPAP----R---GVPKIDVTFDLDANGILNVTAKDT------------------S---S---------------- 413 (549)
Q Consensus 378 ~i~~i~~~~----~---g~~~i~v~~~~d~~g~l~v~~~~~------------------~---t---------------- 413 (549)
.+.|+.... . ....|+++|.+|..|++.|+..+. + |
T Consensus 492 elsgV~d~~kk~~~~~~~~KGIk~~F~~D~Sgi~~v~~~evv~e~~~~~d~~~~~st~~K~~~~~e~e~~~~~~~~~e~a 571 (902)
T KOG0104|consen 492 ELSGVKDALKKNSYSDSESKGIKASFSLDLSGIVLVSRVEVVFEKQKEEDSGDKKSTLSKLGSTSEGEETSDDSVQEEDA 571 (902)
T ss_pred EEecchHHHHhcccchhhccCceEEEEEcCcCceEEeeeeEEEeccCCcccchhhhhhhccccccccccccccccchhhh
Confidence 887776322 1 123589999999999999875320 0 0
Q ss_pred -------CC--c------------------------------------eeEEEecCC---CCCCHHHHHHHHHHHHhhhh
Q psy3431 414 -------GK--S------------------------------------QNITIKNDK---GRLSKEEIDRMINDAERYKD 445 (549)
Q Consensus 414 -------~~--~------------------------------------~~i~i~~~~---~~ls~eei~~~~~~~~~~~~ 445 (549)
++ + ..+.|.... +.|+...+.....+++.+..
T Consensus 572 e~k~~ep~e~se~~ee~~~d~s~e~k~e~~t~e~~~~~~~~~~~~p~~~~~~i~~~~~~~~~l~~~~~~~~~~kl~d~~~ 651 (902)
T KOG0104|consen 572 EEKGLEPSERSELEEEAEEDASQEDKTEKETSEAQKPTEKKETPAPMVVRLQIQETYPDLPVLNENALDAAVAKLEDFVQ 651 (902)
T ss_pred hhhccCccccccccccccccccccccccccchhccCcchhhcccCcceeEeeeeeecccccCCchhHHHHHHHHHHHHHH
Confidence 00 0 013343332 35899999999999999999
Q ss_pred hhHHHHHHHHHhhhHHHHHHHHHHHhhhcc--CccChhHHHHHHHHHHHHHHHhhcC-CcCCHHHHHHHHHHHHHHHHHH
Q psy3431 446 EDEKQKERISARNNLEAYVFNVKQALDDAG--NKLTESEKSRCREECDATLKWLDNN-TLADKEEYQDKLQQLQKSCMPL 522 (549)
Q Consensus 446 ~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~--~~~~~~e~~~i~~~l~~~~~Wl~~~-~~a~~~~~~~kl~~L~~~~~~i 522 (549)
.|+.+.+++++.|.||.|+|++.++|++++ .+.+++|+..|.+.+..+.+||+++ .+..+.+|.+++.+|++++..+
T Consensus 652 ~e~~k~~re~a~N~LE~~l~e~q~~l~d~ey~e~at~EEk~~L~~~~~~~~~Wleed~~~~~t~~~~ek~a~L~~l~~~~ 731 (902)
T KOG0104|consen 652 KEKEKSEREEASNELEAFLFELQDKLDDDEYAEVATEEEKKILKKKVSLLMDWLEEDGSQTPTEMLTEKLAELKKLETSK 731 (902)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhcCchHhhhcCHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999998866 8899999999999999999999976 4689999999999999999999
Q ss_pred HHHHhcC
Q psy3431 523 MSKMHGG 529 (549)
Q Consensus 523 ~~r~~e~ 529 (549)
.+|..++
T Consensus 732 ~~R~ee~ 738 (902)
T KOG0104|consen 732 NFREEER 738 (902)
T ss_pred hHHHHHH
Confidence 9998765
No 20
>PRK11678 putative chaperone; Provisional
Probab=100.00 E-value=7.7e-44 Score=368.37 Aligned_cols=210 Identities=30% Similarity=0.428 Sum_probs=183.1
Q ss_pred CEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEe---------------------------------------
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT--------------------------------------- 42 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~--------------------------------------- 42 (549)
+++|||||||||+||++.+|++++++++.|++.+||+|+|.
T Consensus 1 ~~iGID~GTtNs~va~~~~~~~~li~~~~~~~~~pS~v~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (450)
T PRK11678 1 MFIGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDERQALLRRAIRYNREEDID 80 (450)
T ss_pred CeEEEecCccceeeEEeeCCceEEEEcCCCCCcCCeeeeccCchhhhhhhhhhcccCcccchhhhhhhhhhhhccccccc
Confidence 46899999999999999999999999999999999999994
Q ss_pred --CCceEEcHhhHHhhhcCCCch--HHHhHHhhCCCCCChHHHhhcccCCeEEeecCCCceEEEEEcCceeeeCHHHHHH
Q psy3431 43 --DTERLIGDAAKNQVAMNPRNT--VFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISS 118 (549)
Q Consensus 43 --~~~~~~G~~A~~~~~~~~~~~--~~~~k~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~ 118 (549)
++..++|..|+.+...+|..+ +..+|++||...-.+ .....++++++
T Consensus 81 ~~~~~~~~G~~A~~~~~~~p~~~r~i~s~Kr~lg~~~~~~-----------------------------~~~~~~e~l~a 131 (450)
T PRK11678 81 VTAQSVFFGLAALAQYLEDPEEVYFVKSPKSFLGASGLKP-----------------------------QQVALFEDLVC 131 (450)
T ss_pred ccccccchhHHHHHhhccCCCCceEEecchhhhccCCCCc-----------------------------cceeCHHHHHH
Confidence 346789999999999999988 779999999752100 02234899999
Q ss_pred HHHHHHHHHHHHHhCCCcceEEEEecCCCC-----HHHHHH---HHHHHHHcCCceeEeecchhHHHHhhhcccCCCCCc
Q psy3431 119 MVLTKMKETAEAYLGHSVRDAVITVPAYFN-----DAQRQA---TKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGER 190 (549)
Q Consensus 119 ~~L~~l~~~a~~~~~~~~~~~vitVPa~f~-----~~qr~~---l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~ 190 (549)
++|++|++.++.++|.++.++|||||++|+ +.||++ +++||+.|||++++|++||+|||++|+... ..+.
T Consensus 132 ~iL~~lk~~ae~~~g~~v~~~VItvPa~F~~~~~~~~qr~a~~~l~~Aa~~AG~~~v~li~EPtAAAl~y~~~~--~~~~ 209 (450)
T PRK11678 132 AMMLHIKQQAEAQLQAAITQAVIGRPVNFQGLGGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDFEATL--TEEK 209 (450)
T ss_pred HHHHHHHHHHHHHhCCCCCcEEEEECCccccCCcchhHHHHHHHHHHHHHHcCCCEEEEEcCHHHHHHHhcccc--CCCC
Confidence 999999999999999999999999999998 778766 799999999999999999999999998653 3678
Q ss_pred eEEEEEcCCCceeeeEEEeeCC------cEEEEEEecCCCCCCcchHHHHHH-HHHHHHH
Q psy3431 191 NVLIFDLGGGTFDVSILSIDEG------ALFEVRSTAGDTHLGGEDFDNRLV-SHLAEEF 243 (549)
Q Consensus 191 ~vlv~D~Gggt~dvsv~~~~~~------~~~~v~~~~~d~~lGG~~iD~~l~-~~l~~~~ 243 (549)
.+||||+||||+|+|++++.++ ...+++++.| ..+||.+||.+|+ +++...|
T Consensus 210 ~vlV~D~GGGT~D~Svv~~~~~~~~~~~r~~~vla~~G-~~lGG~DfD~~L~~~~~~~~f 268 (450)
T PRK11678 210 RVLVVDIGGGTTDCSMLLMGPSWRGRADRSASLLGHSG-QRIGGNDLDIALAFKQLMPLL 268 (450)
T ss_pred eEEEEEeCCCeEEEEEEEecCcccccCCcceeEEecCC-CCCChHHHHHHHHHHHHHHHh
Confidence 9999999999999999998643 1468999998 6899999999997 5666555
No 21
>PRK13928 rod shape-determining protein Mbl; Provisional
Probab=99.97 E-value=6e-30 Score=259.05 Aligned_cols=240 Identities=25% Similarity=0.367 Sum_probs=176.2
Q ss_pred EEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCC--c-eEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChHH
Q psy3431 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT--E-RLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPKI 80 (549)
Q Consensus 4 vGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~--~-~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~~ 80 (549)
+||||||+||+++.. ++..++. .||+|+|..+ . ..+|.+|+.+..+.|.+.... +++.
T Consensus 6 ~gIDlGt~~~~i~~~--~~~~v~~-------~psvv~~~~~~~~i~~vG~~A~~~~~~~p~~~~~~------~pi~---- 66 (336)
T PRK13928 6 IGIDLGTANVLVYVK--GKGIVLN-------EPSVVAIDKNTNKVLAVGEEARRMVGRTPGNIVAI------RPLR---- 66 (336)
T ss_pred eEEEcccccEEEEEC--CCCEEEc-------cCCEEEEECCCCeEEEecHHHHHhhhcCCCCEEEE------ccCC----
Confidence 899999999999876 4334442 6999999964 2 468999988876666554310 1110
Q ss_pred HhhcccCCeEEeecCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHH
Q psy3431 81 QQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA 160 (549)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~ 160 (549)
+ -.+...+++..+|+++.+.+..........+|||||++|+..||+++++|++
T Consensus 67 ------------------------~---G~i~d~~~~~~~l~~~~~~~~~~~~~~~p~~vitvP~~~~~~~r~~~~~a~~ 119 (336)
T PRK13928 67 ------------------------D---GVIADYDVTEKMLKYFINKACGKRFFSKPRIMICIPTGITSVEKRAVREAAE 119 (336)
T ss_pred ------------------------C---CeEecHHHHHHHHHHHHHHHhccCCCCCCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 0 1233445667777777755443222234479999999999999999999999
Q ss_pred HcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHH
Q psy3431 161 IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 240 (549)
Q Consensus 161 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~ 240 (549)
.||++.+.+++||+|||++|+.... .+..++|||+||||||+++++... .+ ..++..+||.+||+.|++++.
T Consensus 120 ~ag~~~~~li~ep~Aaa~~~g~~~~--~~~~~lVvDiGggttdvsvv~~g~--~~----~~~~~~lGG~did~~i~~~l~ 191 (336)
T PRK13928 120 QAGAKKVYLIEEPLAAAIGAGLDIS--QPSGNMVVDIGGGTTDIAVLSLGG--IV----TSSSIKVAGDKFDEAIIRYIR 191 (336)
T ss_pred HcCCCceEecccHHHHHHHcCCccc--CCCeEEEEEeCCCeEEEEEEEeCC--EE----EeCCcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999988643 467799999999999999998632 22 345689999999999999988
Q ss_pred HHHHhccc-cccccCC----------------------------------------------------------C-----
Q psy3431 241 EEFKRKCR-SASDVGD----------------------------------------------------------H----- 256 (549)
Q Consensus 241 ~~~~~~~~-~~~e~~K----------------------------------------------------------~----- 256 (549)
.+|+.... ..||++| .
T Consensus 192 ~~~~~~~~~~~ae~lK~~~~~~~~~~~~~~~~v~g~~~~~~~~~~~~i~~~~~~eii~~~~~~i~~~i~~~l~~~~~~~~ 271 (336)
T PRK13928 192 KKYKLLIGERTAEEIKIKIGTAFPGAREEEMEIRGRDLVTGLPKTITVTSEEIREALKEPVSAIVQAVKSVLERTPPELS 271 (336)
T ss_pred HHhchhcCHHHHHHHHHHhcccccccCCcEEEEecccccCCCceEEEECHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Confidence 76643222 1222222 0
Q ss_pred CCChH-HH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHH
Q psy3431 257 HGDAH-FV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 298 (549)
Q Consensus 257 ~~~i~-~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l 298 (549)
.+.++ .| |+++|++.| +.++....||+++||+|||+++..+
T Consensus 272 ~~~i~~~IvL~GG~s~ipgi~e~l~~~~-~~~v~~~~~P~~ava~Gaa~~~~~~ 324 (336)
T PRK13928 272 ADIIDRGIIMTGGGALLHGLDKLLAEET-KVPVYIAEDPISCVALGTGKMLENI 324 (336)
T ss_pred HhhcCCCEEEECcccchhhHHHHHHHHH-CCCceecCCHHHHHHHHHHHHHhch
Confidence 11122 22 889999999 5677788899999999999998764
No 22
>PRK13929 rod-share determining protein MreBH; Provisional
Probab=99.97 E-value=1.2e-29 Score=255.89 Aligned_cols=187 Identities=29% Similarity=0.486 Sum_probs=149.4
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCC-c--eEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChH
Q psy3431 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-E--RLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPK 79 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-~--~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (549)
.+||||||+|+++ +.+++.. +.| .||+|+|..+ . ..+|.+|+.+..+.|.++... +++.
T Consensus 6 ~~giDlGt~~~~i--~~~~~~~-~~~------~ps~va~~~~~~~~~~vG~~A~~~~~~~p~~~~~~------~pi~--- 67 (335)
T PRK13929 6 EIGIDLGTANILV--YSKNKGI-ILN------EPSVVAVDTETKAVLAIGTEAKNMIGKTPGKIVAV------RPMK--- 67 (335)
T ss_pred eEEEEcccccEEE--EECCCcE-Eec------CCcEEEEECCCCeEEEeCHHHHHhhhcCCCcEEEE------ecCC---
Confidence 5899999999985 5556543 444 4999999855 2 579999999998888775442 1110
Q ss_pred HHhhcccCCeEEeecCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcc--eEEEEecCCCCHHHHHHHHH
Q psy3431 80 IQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVR--DAVITVPAYFNDAQRQATKD 157 (549)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~--~~vitVPa~f~~~qr~~l~~ 157 (549)
.| .+..-++++.+|+++++.++..++..+. .+|||||++|+..||+++.+
T Consensus 68 -------------------------~G---~I~d~d~~~~~l~~~~~~~~~~l~~~~~~~~vvitvP~~~~~~~R~~l~~ 119 (335)
T PRK13929 68 -------------------------DG---VIADYDMTTDLLKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISD 119 (335)
T ss_pred -------------------------CC---ccCCHHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEcCCCCCHHHHHHHHH
Confidence 01 1223378899999999998888776553 79999999999999999999
Q ss_pred HHHHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHH
Q psy3431 158 AGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS 237 (549)
Q Consensus 158 Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~ 237 (549)
|++.||++.+.+++||+|||++|++... .+..++|+|+||||+|++++++.. .+ ..++..+||.+||+.|.+
T Consensus 120 a~~~ag~~~~~li~ep~Aaa~~~g~~~~--~~~~~lvvDiG~gtt~v~vi~~~~--~~----~~~~~~~GG~~id~~l~~ 191 (335)
T PRK13929 120 AVKNCGAKNVHLIEEPVAAAIGADLPVD--EPVANVVVDIGGGTTEVAIISFGG--VV----SCHSIRIGGDQLDEDIVS 191 (335)
T ss_pred HHHHcCCCeeEeecCHHHHHHhcCCCcC--CCceEEEEEeCCCeEEEEEEEeCC--EE----EecCcCCHHHHHHHHHHH
Confidence 9999999999999999999999987643 567899999999999999998632 22 334578999999999999
Q ss_pred HHHHHH
Q psy3431 238 HLAEEF 243 (549)
Q Consensus 238 ~l~~~~ 243 (549)
++.+.+
T Consensus 192 ~l~~~~ 197 (335)
T PRK13929 192 FVRKKY 197 (335)
T ss_pred HHHHHh
Confidence 987655
No 23
>TIGR00904 mreB cell shape determining protein, MreB/Mrl family. A close homolog is found in the Archaeon Methanobacterium thermoautotrophicum, and a more distant homolog in Archaeoglobus fulgidus. The family is related to cell division protein FtsA and heat shock protein DnaK.
Probab=99.96 E-value=1.3e-27 Score=241.81 Aligned_cols=239 Identities=25% Similarity=0.365 Sum_probs=166.5
Q ss_pred EEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCC-----c--eEEcHhhHHhhhcCCCchHHHhHHhhCCCCC
Q psy3431 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-----E--RLIGDAAKNQVAMNPRNTVFDAKRLIGRKFD 76 (549)
Q Consensus 4 vGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-----~--~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 76 (549)
+||||||+||+++....|. ++ ..||+|+|..+ . ..+|++|+.++.+.|.+.. +++-+.
T Consensus 5 ~giDlGt~~s~i~~~~~~~--~~-------~~psvv~~~~~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~~pi~---- 69 (333)
T TIGR00904 5 IGIDLGTANTLVYVKGRGI--VL-------NEPSVVAIRTDRDAKTKSILAVGHEAKEMLGKTPGNIV--AIRPMK---- 69 (333)
T ss_pred eEEecCcceEEEEECCCCE--EE-------ecCCEEEEecCCCCCCCeEEEEhHHHHHhhhcCCCCEE--EEecCC----
Confidence 8999999999998754332 33 47999999843 3 6799999887666665532 111111
Q ss_pred ChHHHhhcccCCeEEeecCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHH
Q psy3431 77 DPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATK 156 (549)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~ 156 (549)
+| ..... +.+..+++++........+.....+|+|||++|+..||++++
T Consensus 70 ----------------------------~G--~i~d~-~~~~~~~~~~l~~~~~~~~~~~~~~vitvP~~~~~~~r~~~~ 118 (333)
T TIGR00904 70 ----------------------------DG--VIADF-EVTEKMIKYFIKQVHSRKSFFKPRIVICVPSGITPVERRAVK 118 (333)
T ss_pred ----------------------------CC--EEEcH-HHHHHHHHHHHHHHhcccccCCCcEEEEeCCCCCHHHHHHHH
Confidence 01 11111 223334444443332211212238999999999999999999
Q ss_pred HHHHHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHH
Q psy3431 157 DAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 236 (549)
Q Consensus 157 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~ 236 (549)
+|++.||++.+.+++||+|||++|+.... .+..++|+|+||||+|++++++.+- ...++..+||++||+.|.
T Consensus 119 ~~~~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~lVvDiG~gttdvs~v~~~~~------~~~~~~~lGG~did~~l~ 190 (333)
T TIGR00904 119 ESALSAGAREVYLIEEPMAAAIGAGLPVE--EPTGSMVVDIGGGTTEVAVISLGGI------VVSRSIRVGGDEFDEAII 190 (333)
T ss_pred HHHHHcCCCeEEEecCHHHHHHhcCCccc--CCceEEEEEcCCCeEEEEEEEeCCE------EecCCccchHHHHHHHHH
Confidence 99999999999999999999999987533 5677999999999999999987432 123456899999999999
Q ss_pred HHHHHHHHhccc-cccccCC-----------------------------------------------------------C
Q psy3431 237 SHLAEEFKRKCR-SASDVGD-----------------------------------------------------------H 256 (549)
Q Consensus 237 ~~l~~~~~~~~~-~~~e~~K-----------------------------------------------------------~ 256 (549)
+++.+++..... +.||++| .
T Consensus 191 ~~l~~~~~~~~~~~~ae~lK~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~ 270 (333)
T TIGR00904 191 NYIRRTYNLLIGEQTAERIKIEIGSAYPLNDEPRKMEVRGRDLVTGLPRTIEITSVEVREALQEPVNQIVEAVKRTLEKT 270 (333)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHhccccccccccceeecCccccCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 998866532221 1222222 0
Q ss_pred ----CCChH--HH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHH
Q psy3431 257 ----HGDAH--FV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 297 (549)
Q Consensus 257 ----~~~i~--~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~ 297 (549)
..++. .| +++.|++.| +.++....||+++||.||++++..
T Consensus 271 ~~~~~~~l~~~~IvL~GGss~ipgl~e~l~~~~-~~~v~~~~~P~~~va~Ga~~~~~~ 327 (333)
T TIGR00904 271 PPELAADIVERGIVLTGGGALLRNLDKLLSKET-GLPVIVADDPLLCVAKGTGKALED 327 (333)
T ss_pred CchhhhhhccCCEEEECcccchhhHHHHHHHHH-CCCceecCChHHHHHHHHHHHHhC
Confidence 00111 12 888898888 577888899999999999998754
No 24
>PRK13927 rod shape-determining protein MreB; Provisional
Probab=99.95 E-value=1.3e-26 Score=235.03 Aligned_cols=240 Identities=24% Similarity=0.378 Sum_probs=167.1
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCC---ceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChH
Q psy3431 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT---ERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPK 79 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (549)
.+||||||++++++.. |...++ .+||+|+|..+ ..++|.+|+.+..+.|.++...
T Consensus 7 ~igIDlGt~~~~i~~~--~~~~~~-------~~ps~v~~~~~~~~~~~vG~~a~~~~~~~~~~~~~~------------- 64 (334)
T PRK13927 7 DLGIDLGTANTLVYVK--GKGIVL-------NEPSVVAIRTDTKKVLAVGEEAKQMLGRTPGNIVAI------------- 64 (334)
T ss_pred eeEEEcCcceEEEEEC--CCcEEE-------ecCCEEEEECCCCeEEEecHHHHHHhhcCCCCEEEE-------------
Confidence 5899999999998543 332233 37999999855 2489999998877666553211
Q ss_pred HHhhcccCCeEEeecCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH
Q psy3431 80 IQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (549)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa 159 (549)
+|. . +| ..... +.+..+|+++......... ....+|+|||++|++.||+++++|+
T Consensus 65 -------~pi----~----------~G--~i~d~-~~~~~ll~~~~~~~~~~~~-~~~~~vi~vP~~~~~~~r~~~~~a~ 119 (334)
T PRK13927 65 -------RPM----K----------DG--VIADF-DVTEKMLKYFIKKVHKNFR-PSPRVVICVPSGITEVERRAVRESA 119 (334)
T ss_pred -------ecC----C----------CC--eecCH-HHHHHHHHHHHHHHhhccC-CCCcEEEEeCCCCCHHHHHHHHHHH
Confidence 011 0 01 11111 2334444444443322221 1237999999999999999999999
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHH
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 239 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l 239 (549)
+.||++.+.+++||+|||++|+.... .+..++|||+||||||++++++... ...++..+||.+||+.|.+++
T Consensus 120 ~~ag~~~~~li~ep~aaa~~~g~~~~--~~~~~lvvDiGggttdvs~v~~~~~------~~~~~~~lGG~~id~~l~~~l 191 (334)
T PRK13927 120 LGAGAREVYLIEEPMAAAIGAGLPVT--EPTGSMVVDIGGGTTEVAVISLGGI------VYSKSVRVGGDKFDEAIINYV 191 (334)
T ss_pred HHcCCCeeccCCChHHHHHHcCCccc--CCCeEEEEEeCCCeEEEEEEecCCe------EeeCCcCChHHHHHHHHHHHH
Confidence 99999999999999999999987543 4567899999999999999986432 133456899999999999999
Q ss_pred HHHHHhccc-cccccCC----------------------------------------------------------CC---
Q psy3431 240 AEEFKRKCR-SASDVGD----------------------------------------------------------HH--- 257 (549)
Q Consensus 240 ~~~~~~~~~-~~~e~~K----------------------------------------------------------~~--- 257 (549)
.+++..... ..+|++| ..
T Consensus 192 ~~~~~~~~~~~~ae~iK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~e~i~~~~~~i~~~i~~~l~~~~~~~ 271 (334)
T PRK13927 192 RRNYNLLIGERTAERIKIEIGSAYPGDEVLEMEVRGRDLVTGLPKTITISSNEIREALQEPLSAIVEAVKVALEQTPPEL 271 (334)
T ss_pred HHHhCcCcCHHHHHHHHHHhhccCCCCCCceEEEeCcccCCCCCeEEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCchh
Confidence 866532221 1122221 10
Q ss_pred -CCh-H-HH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHH
Q psy3431 258 -GDA-H-FV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 298 (549)
Q Consensus 258 -~~i-~-~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l 298 (549)
.++ + .| ++++|++.| +.++....||+++||+|||+++..+
T Consensus 272 ~~~~~~~~IvL~GG~s~ipgl~~~l~~~~-~~~v~~~~~P~~ava~Ga~~~~~~~ 325 (334)
T PRK13927 272 AADIVDRGIVLTGGGALLRGLDKLLSEET-GLPVHVAEDPLTCVARGTGKALENI 325 (334)
T ss_pred hhhhhcCCEEEECchhhhhHHHHHHHHHH-CCCcEecCCHHHHHHHHHHHHHhhH
Confidence 011 1 12 888899988 5678888999999999999998653
No 25
>PRK13930 rod shape-determining protein MreB; Provisional
Probab=99.94 E-value=8.2e-26 Score=229.45 Aligned_cols=188 Identities=28% Similarity=0.456 Sum_probs=139.8
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCC---ceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChH
Q psy3431 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT---ERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPK 79 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (549)
-+||||||++++++++..+ + ++ .+||+|++... ..++|.+|+....+.|.+.. ++
T Consensus 10 ~vgiDlGt~~t~i~~~~~~-~-~~-------~~ps~v~~~~~~~~~~~vG~~A~~~~~~~~~~~~--~~----------- 67 (335)
T PRK13930 10 DIGIDLGTANTLVYVKGKG-I-VL-------NEPSVVAIDTKTGKVLAVGEEAKEMLGRTPGNIE--AI----------- 67 (335)
T ss_pred ceEEEcCCCcEEEEECCCC-E-EE-------ecCCEEEEECCCCeEEEEcHHHHHhhhcCCCCeE--Ee-----------
Confidence 3899999999999987333 2 32 25999999752 46899999887665554421 00
Q ss_pred HHhhcccCCeEEeecCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH
Q psy3431 80 IQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (549)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa 159 (549)
+|+ . +| .+..-+.+..+|+++.+.+..........+|+|+|++|+..+|+++.+|+
T Consensus 68 -------~pi----~----------~G---~i~d~~~~e~ll~~~~~~~~~~~~~~~~~vvit~P~~~~~~~r~~~~~~~ 123 (335)
T PRK13930 68 -------RPL----K----------DG---VIADFEATEAMLRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAA 123 (335)
T ss_pred -------ecC----C----------CC---eEcCHHHHHHHHHHHHHHHhhcccCCCCcEEEEECCCCCHHHHHHHHHHH
Confidence 011 0 11 11122456777777776555444445678999999999999999999999
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHH
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 239 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l 239 (549)
+.+|++.+.+++||+|||++|+.... .....+|||+||||||++++.... .+ ..+...+||.+||+.|.+++
T Consensus 124 e~~g~~~~~lv~ep~AAa~a~g~~~~--~~~~~lVvDiG~gttdvs~v~~g~--~~----~~~~~~lGG~~id~~l~~~l 195 (335)
T PRK13930 124 EHAGAREVYLIEEPMAAAIGAGLPVT--EPVGNMVVDIGGGTTEVAVISLGG--IV----YSESIRVAGDEMDEAIVQYV 195 (335)
T ss_pred HHcCCCeEEecccHHHHHHhcCCCcC--CCCceEEEEeCCCeEEEEEEEeCC--EE----eecCcCchhHHHHHHHHHHH
Confidence 99999999999999999999987543 345679999999999999997532 22 24558999999999999998
Q ss_pred HHHHH
Q psy3431 240 AEEFK 244 (549)
Q Consensus 240 ~~~~~ 244 (549)
.+++.
T Consensus 196 ~~~~~ 200 (335)
T PRK13930 196 RRKYN 200 (335)
T ss_pred HHHhC
Confidence 87653
No 26
>PF06723 MreB_Mbl: MreB/Mbl protein; InterPro: IPR004753 Bacterial cell shape varies greatly between species, and characteristic morphologies are used for identification purposes. In addition to individual cell shape, the way in which groups of cells are arranged is also typical of some bacterial species, especially Gram-positive coccoids. For many years, it was believed that micro-organisms with other than spheroidal cell shapes maintained morphology by means of their external cell walls. Recently, however, studies of the Gram-positive rod Bacillus subtilis have revealed two related genes that are essential for the integrity of cell morphogenesis []. Termed mreB and mbl, the gene products localise close to the cell surface, forming filamentous helical structures. Many homologues have been found in diverse bacterial groups, suggesting a common ancestor []. The crystal structure of MreB from Thermotoga maritima has been resolved using X-ray crystallography []. It consists of 19 beta-strands and 15 alpha- helices, and shows remarkable structural similarity to eukaryotic actin. MreB crystals also contain proto-filaments, with individual proteins assembling into polymers like F-actin, in the same orientation. It is hypothesised therefore, that MreB was the forerunner of actin in early eukaryotes [].; GO: 0000902 cell morphogenesis; PDB: 1JCF_A 1JCE_A 2WUS_A 1JCG_A.
Probab=99.93 E-value=5.1e-25 Score=217.02 Aligned_cols=238 Identities=27% Similarity=0.407 Sum_probs=161.4
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCC---ceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChH
Q psy3431 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT---ERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPK 79 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (549)
-+||||||+|+.|+.-..|. +. ..||+|++... -..+|.+|+.+..+.|.+...
T Consensus 3 ~igIDLGT~~t~i~~~~~Gi---v~------~epSvVA~~~~~~~i~avG~~A~~m~gktp~~i~~-------------- 59 (326)
T PF06723_consen 3 DIGIDLGTSNTRIYVKGKGI---VL------NEPSVVAYDKDTGKILAVGDEAKAMLGKTPDNIEV-------------- 59 (326)
T ss_dssp EEEEEE-SSEEEEEETTTEE---EE------EEES-EEEETTT--EEEESHHHHTTTTS-GTTEEE--------------
T ss_pred ceEEecCcccEEEEECCCCE---EE------ecCcEEEEECCCCeEEEEhHHHHHHhhcCCCccEE--------------
Confidence 58999999999995433332 22 34999999975 345899998877766655211
Q ss_pred HHhhcccCCeEEeecCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH
Q psy3431 80 IQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG 159 (549)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa 159 (549)
.+|.. + -.+.--++...+|+++.+.+.......-..++|+||+.-++.+|+++.+|+
T Consensus 60 ------~~Pl~--------------~---GvI~D~~~~~~~l~~~l~k~~~~~~~~~p~vvi~vP~~~T~verrA~~~a~ 116 (326)
T PF06723_consen 60 ------VRPLK--------------D---GVIADYEAAEEMLRYFLKKALGRRSFFRPRVVICVPSGITEVERRALIDAA 116 (326)
T ss_dssp ------E-SEE--------------T---TEESSHHHHHHHHHHHHHHHHTSS-SS--EEEEEE-SS--HHHHHHHHHHH
T ss_pred ------Ecccc--------------C---CcccCHHHHHHHHHHHHHHhccCCCCCCCeEEEEeCCCCCHHHHHHHHHHH
Confidence 01110 1 233345677788888887776543335567999999999999999999999
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHH
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL 239 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l 239 (549)
..||.+.+.||+||.|||+..++.- ..+...||+|+||||||++++.. |..+ .+.. ...||.+||++|.+|+
T Consensus 117 ~~aGa~~V~li~ep~AaAiGaGl~i--~~~~g~miVDIG~GtTdiavisl--ggiv---~s~s-i~~gG~~~DeaI~~~i 188 (326)
T PF06723_consen 117 RQAGARKVYLIEEPIAAAIGAGLDI--FEPRGSMIVDIGGGTTDIAVISL--GGIV---ASRS-IRIGGDDIDEAIIRYI 188 (326)
T ss_dssp HHTT-SEEEEEEHHHHHHHHTT--T--TSSS-EEEEEE-SS-EEEEEEET--TEEE---EEEE-ES-SHHHHHHHHHHHH
T ss_pred HHcCCCEEEEecchHHHHhcCCCCC--CCCCceEEEEECCCeEEEEEEEC--CCEE---EEEE-EEecCcchhHHHHHHH
Confidence 9999999999999999999988774 36788999999999999999974 4122 2222 5789999999999999
Q ss_pred HHHHHhccc-cccccCC----------------------------------------------------------CCCC-
Q psy3431 240 AEEFKRKCR-SASDVGD----------------------------------------------------------HHGD- 259 (549)
Q Consensus 240 ~~~~~~~~~-~~~e~~K----------------------------------------------------------~~~~- 259 (549)
.++|+-..+ ..||++| ++.+
T Consensus 189 r~~y~l~Ig~~tAE~iK~~~g~~~~~~~~~~~~v~Grd~~tGlP~~~~i~~~ev~~ai~~~~~~I~~~i~~~Le~~pPel 268 (326)
T PF06723_consen 189 REKYNLLIGERTAEKIKIEIGSASPPEEEESMEVRGRDLITGLPKSIEITSSEVREAIEPPVDQIVEAIKEVLEKTPPEL 268 (326)
T ss_dssp HHHHSEE--HHHHHHHHHHH-BSS--HHHHEEEEEEEETTTTCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHTS-HHH
T ss_pred HHhhCcccCHHHHHHHHHhcceeeccCCCceEEEECccccCCCcEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHhCCHHH
Confidence 999965555 5566665 1111
Q ss_pred hHHH----------------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHH
Q psy3431 260 AHFV----------------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQA 295 (549)
Q Consensus 260 i~~V----------------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a 295 (549)
..+| +.++|++.+ +.++....||..+||.||....
T Consensus 269 ~~DI~~~GI~LtGGga~l~Gl~~~i~~~~-~~pV~va~~P~~~va~G~~~~l 319 (326)
T PF06723_consen 269 AADILENGIVLTGGGALLRGLDEYISEET-GVPVRVADDPLTAVARGAGKLL 319 (326)
T ss_dssp HHHHHHH-EEEESGGGGSBTHHHHHHHHH-SS-EEE-SSTTTHHHHHHHHTT
T ss_pred HHHHHHCCEEEEChhhhhccHHHHHHHHH-CCCEEEcCCHHHHHHHHHHHHH
Confidence 1111 788888888 6788899999999999998654
No 27
>COG1077 MreB Actin-like ATPase involved in cell morphogenesis [Cell division and chromosome partitioning]
Probab=99.89 E-value=3.5e-22 Score=188.98 Aligned_cols=199 Identities=28% Similarity=0.421 Sum_probs=148.5
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeC--C---ceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCC
Q psy3431 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTD--T---ERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDD 77 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~--~---~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~ 77 (549)
.+|||+||.|+.|..- |+- +++ .-||+|++.. + -..+|.+|+.+..+.|.+...- |+.
T Consensus 8 diGIDLGTanTlV~~k--~kg-IVl------~ePSVVAi~~~~~~~~v~aVG~eAK~MlGrTP~ni~ai------RPm-- 70 (342)
T COG1077 8 DIGIDLGTANTLVYVK--GKG-IVL------NEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVAI------RPM-- 70 (342)
T ss_pred cceeeecccceEEEEc--Cce-EEe------cCceEEEEeecCCCceEEEehHHHHHHhccCCCCceEE------eec--
Confidence 6899999999999754 332 344 3499999987 3 3358999988877777663210 000
Q ss_pred hHHHhhcccCCeEEeecCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhC-CCcceEEEEecCCCCHHHHHHHH
Q psy3431 78 PKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATK 156 (549)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~-~~~~~~vitVPa~f~~~qr~~l~ 156 (549)
.+ -.+.--++...+|+|+.+......+ .....++++||..-++.+|+|++
T Consensus 71 --------------------------kd---GVIAd~~~te~ml~~fik~~~~~~~~~~~prI~i~vP~g~T~VErrAi~ 121 (342)
T COG1077 71 --------------------------KD---GVIADFEVTELMLKYFIKKVHKNGSSFPKPRIVICVPSGITDVERRAIK 121 (342)
T ss_pred --------------------------CC---cEeecHHHHHHHHHHHHHHhccCCCCCCCCcEEEEecCCccHHHHHHHH
Confidence 01 2344456677778888777664333 34557999999999999999999
Q ss_pred HHHHHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHH
Q psy3431 157 DAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 236 (549)
Q Consensus 157 ~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~ 236 (549)
+|++.||.+.+.+++||.|||+..++.- ..+..-||||+||||+|++++.+.+ +..... ..+||+.||+.+.
T Consensus 122 ea~~~aGa~~V~lieEp~aAAIGaglpi--~ep~G~mvvDIGgGTTevaVISlgg-----iv~~~S-irv~GD~~De~Ii 193 (342)
T COG1077 122 EAAESAGAREVYLIEEPMAAAIGAGLPI--MEPTGSMVVDIGGGTTEVAVISLGG-----IVSSSS-VRVGGDKMDEAII 193 (342)
T ss_pred HHHHhccCceEEEeccHHHHHhcCCCcc--cCCCCCEEEEeCCCceeEEEEEecC-----EEEEee-EEEecchhhHHHH
Confidence 9999999999999999999998876653 3566779999999999999998632 222222 6799999999999
Q ss_pred HHHHHHHHhccc-cccccCC
Q psy3431 237 SHLAEEFKRKCR-SASDVGD 255 (549)
Q Consensus 237 ~~l~~~~~~~~~-~~~e~~K 255 (549)
+|+.++|+--.+ ..+|++|
T Consensus 194 ~yvr~~~nl~IGe~taE~iK 213 (342)
T COG1077 194 VYVRKKYNLLIGERTAEKIK 213 (342)
T ss_pred HHHHHHhCeeecHHHHHHHH
Confidence 999999876655 4455544
No 28
>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein.
Probab=99.87 E-value=2.9e-22 Score=191.67 Aligned_cols=165 Identities=22% Similarity=0.311 Sum_probs=133.4
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCceeEeecchhHHHHhhhcccCCCCC
Q psy3431 110 TFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGE 189 (549)
Q Consensus 110 ~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~ 189 (549)
.+.--+.++++|+++++.++.+++.++.++|+|||++|++.||+++.+|++.||++++.+++||.|||++|+..
T Consensus 35 ~I~d~~~~~~~l~~l~~~a~~~~g~~~~~vvisVP~~~~~~~r~a~~~a~~~aGl~~~~li~ep~Aaa~~~~~~------ 108 (239)
T TIGR02529 35 IVVDFLGAVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAAAAVLQIK------ 108 (239)
T ss_pred eEEEhHHHHHHHHHHHHHHHHHhCCCcCcEEEEECCCCCcccHHHHHHHHHHcCCceEEEeehHHHHHHHhcCC------
Confidence 44456788999999999999999999999999999999999999999999999999999999999999998643
Q ss_pred ceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHHHHHhccccccccCC----CC--------
Q psy3431 190 RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKCRSASDVGD----HH-------- 257 (549)
Q Consensus 190 ~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~~~~~~~~~~~e~~K----~~-------- 257 (549)
..+|+|+||||+|+++++ .| . +.. ..+..+||++||+.|.+++.-.+ .+||++| +.
T Consensus 109 -~~~vvDiGggtt~i~i~~--~G-~--i~~-~~~~~~GG~~it~~Ia~~~~i~~-----~~AE~~K~~~~~~~~~~~~i~ 176 (239)
T TIGR02529 109 -NGAVVDVGGGTTGISILK--KG-K--VIY-SADEPTGGTHMSLVLAGAYGISF-----EEAEEYKRGHKDEEEIFPVVK 176 (239)
T ss_pred -CcEEEEeCCCcEEEEEEE--CC-e--EEE-EEeeecchHHHHHHHHHHhCCCH-----HHHHHHHHhcCCHHHHHHHHH
Confidence 259999999999999975 34 2 222 33578999999999887654222 4555555 11
Q ss_pred ----------------CChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHH
Q psy3431 258 ----------------GDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAV 293 (549)
Q Consensus 258 ----------------~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~ 293 (549)
..++.| +++.+++.| +.++..+.||++++|+|||+
T Consensus 177 ~~~~~i~~~i~~~l~~~~~~~v~LtGG~a~ipgl~e~l~~~l-g~~v~~~~~P~~~va~Gaa~ 238 (239)
T TIGR02529 177 PVYQKMASIVKRHIEGQGVKDLYLVGGACSFSGFADVFEKQL-GLNVIKPQHPLYVTPLGIAM 238 (239)
T ss_pred HHHHHHHHHHHHHHHhCCCCEEEEECchhcchhHHHHHHHHh-CCCcccCCCCCeehhheeec
Confidence 111122 889999999 67788899999999999986
No 29
>PRK15080 ethanolamine utilization protein EutJ; Provisional
Probab=99.84 E-value=6.8e-20 Score=178.47 Aligned_cols=163 Identities=26% Similarity=0.390 Sum_probs=131.9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCceeEeecchhHHHHhhhcccCCCCCceEE
Q psy3431 114 EEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 193 (549)
Q Consensus 114 ~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vl 193 (549)
-+.....|+++++.++.+++.++..++++||++|+..+|+++.+|++.||+++..+++||.|++.+|... ..+
T Consensus 66 i~~a~~~i~~~~~~ae~~~g~~i~~v~~~vp~~~~~~~~~~~~~~~~~aGl~~~~ii~e~~A~a~~~~~~-------~~~ 138 (267)
T PRK15080 66 FIGAVTIVRRLKATLEEKLGRELTHAATAIPPGTSEGDPRAIINVVESAGLEVTHVLDEPTAAAAVLGID-------NGA 138 (267)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCcCeEEEEeCCCCCchhHHHHHHHHHHcCCceEEEechHHHHHHHhCCC-------CcE
Confidence 5667778999999999998988999999999999999999999999999999999999999999887543 158
Q ss_pred EEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHHHHHhccccccccCC----CC------------
Q psy3431 194 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKCRSASDVGD----HH------------ 257 (549)
Q Consensus 194 v~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~~~~~~~~~~~e~~K----~~------------ 257 (549)
++|+||||||++++. ++ .+ ..+ .+..+||.+||+.|.+++.-.+ .+||++| +.
T Consensus 139 vvDIGggtt~i~v~~--~g-~~--~~~-~~~~~GG~~it~~Ia~~l~i~~-----~eAE~lK~~~~~~~~~~~ii~~~~~ 207 (267)
T PRK15080 139 VVDIGGGTTGISILK--DG-KV--VYS-ADEPTGGTHMSLVLAGAYGISF-----EEAEQYKRDPKHHKEIFPVVKPVVE 207 (267)
T ss_pred EEEeCCCcEEEEEEE--CC-eE--EEE-ecccCchHHHHHHHHHHhCCCH-----HHHHHHHhccCCHHHHHHHHHHHHH
Confidence 999999999999975 34 22 222 4679999999999998864322 4455555 11
Q ss_pred ------------CChHHH-----------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHH
Q psy3431 258 ------------GDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQA 295 (549)
Q Consensus 258 ------------~~i~~V-----------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a 295 (549)
..++.| +++.+++.| +.++..+.||+.++|+|||+++
T Consensus 208 ~i~~~i~~~l~~~~~~~IvLtGG~s~lpgl~e~l~~~l-g~~v~~~~~P~~~~a~Gaa~~~ 267 (267)
T PRK15080 208 KMASIVARHIEGQDVEDIYLVGGTCCLPGFEEVFEKQT-GLPVHKPQHPLFVTPLGIALSC 267 (267)
T ss_pred HHHHHHHHHHhcCCCCEEEEECCcccchhHHHHHHHHh-CCCcccCCCchHHHHHHHHhhC
Confidence 122222 889999999 6778889999999999999875
No 30
>PRK09472 ftsA cell division protein FtsA; Reviewed
Probab=99.46 E-value=4.9e-12 Score=131.67 Aligned_cols=90 Identities=21% Similarity=0.315 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcc
Q psy3431 150 AQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 229 (549)
Q Consensus 150 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~ 229 (549)
.++. +.+|++.|||++..++.||.|+|.++.... ..+..++++|+||||||+++++ +| .+. ......+||.
T Consensus 167 ~~~~-~~~a~~~aGl~v~~iv~ep~Aaa~a~l~~~--e~~~gv~vvDiGggtTdisv~~--~G-~l~---~~~~i~~GG~ 237 (420)
T PRK09472 167 MAKN-IVKAVERCGLKVDQLIFAGLASSYAVLTED--ERELGVCVVDIGGGTMDIAVYT--GG-ALR---HTKVIPYAGN 237 (420)
T ss_pred HHHH-HHHHHHHcCCeEeeEEehhhHHHHHhcChh--hhhcCeEEEEeCCCceEEEEEE--CC-EEE---EEeeeechHH
Confidence 3444 457999999999999999999999886542 2467799999999999999996 34 221 1222679999
Q ss_pred hHHHHHHHHH------HHHHHhccc
Q psy3431 230 DFDNRLVSHL------AEEFKRKCR 248 (549)
Q Consensus 230 ~iD~~l~~~l------~~~~~~~~~ 248 (549)
+|++.|...| +++++.+++
T Consensus 238 ~it~dIa~~l~i~~~~AE~lK~~~g 262 (420)
T PRK09472 238 VVTSDIAYAFGTPPSDAEAIKVRHG 262 (420)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHhcc
Confidence 9999998877 455554433
No 31
>TIGR01174 ftsA cell division protein FtsA. This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.
Probab=99.26 E-value=1.6e-10 Score=118.89 Aligned_cols=83 Identities=24% Similarity=0.328 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCc
Q psy3431 149 DAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228 (549)
Q Consensus 149 ~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG 228 (549)
....+.+.+|++.||+++..++.||.|+|++|.... ..+..++|+|+||||+|++++.- + .... .....+||
T Consensus 157 ~~~v~~~~~~~~~aGl~~~~i~~~~~A~a~a~~~~~--~~~~~~~vvDiG~gtt~i~i~~~--g-~~~~---~~~i~~GG 228 (371)
T TIGR01174 157 STILRNLVKCVERCGLEVDNIVLSGLASAIAVLTED--EKELGVCLIDIGGGTTDIAVYTG--G-SIRY---TKVIPIGG 228 (371)
T ss_pred HHHHHHHHHHHHHcCCCeeeEEEhhhhhhhhhcCcc--hhcCCEEEEEeCCCcEEEEEEEC--C-EEEE---EeeecchH
Confidence 445678889999999999999999999999885432 24567999999999999999863 4 2221 23367999
Q ss_pred chHHHHHHHHH
Q psy3431 229 EDFDNRLVSHL 239 (549)
Q Consensus 229 ~~iD~~l~~~l 239 (549)
++||+.|.+.+
T Consensus 229 ~~it~~i~~~l 239 (371)
T TIGR01174 229 NHITKDIAKAL 239 (371)
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 32
>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]
Probab=99.24 E-value=3.4e-12 Score=112.46 Aligned_cols=108 Identities=30% Similarity=0.450 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEc
Q psy3431 118 SMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDL 197 (549)
Q Consensus 118 ~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~ 197 (549)
-.+.+++++.+++.+|.+..+..=++|+.--+...+...+..+.||+.++.+++||||||.-.+++.. .|+|+
T Consensus 75 veiVrrlkd~lEk~lGi~~tha~taiPPGt~~~~~ri~iNViESAGlevl~vlDEPTAaa~vL~l~dg-------~VVDi 147 (277)
T COG4820 75 VEIVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADVLQLDDG-------GVVDI 147 (277)
T ss_pred HHHHHHHHHHHHHhhCeEeeeccccCCCCccCCCceEEEEeecccCceeeeecCCchhHHHHhccCCC-------cEEEe
Confidence 34678899999999999999999999999877788888899999999999999999999965555433 79999
Q ss_pred CCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHH
Q psy3431 198 GGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSH 238 (549)
Q Consensus 198 Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~ 238 (549)
||||+-+|+++- | .|. +..|...||.++...|+-+
T Consensus 148 GGGTTGIsi~kk--G---kVi-y~ADEpTGGtHmtLvlAG~ 182 (277)
T COG4820 148 GGGTTGISIVKK--G---KVI-YSADEPTGGTHMTLVLAGN 182 (277)
T ss_pred CCCcceeEEEEc--C---cEE-EeccCCCCceeEEEEEecc
Confidence 999999999974 3 222 2345778888887666544
No 33
>smart00268 ACTIN Actin. ACTIN subfamily of ACTIN/mreB/sugarkinase/Hsp70 superfamily
Probab=99.14 E-value=1.1e-09 Score=112.90 Aligned_cols=177 Identities=18% Similarity=0.220 Sum_probs=121.5
Q ss_pred CEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCC---------ceEEcHhhHHhhhcCCCchHHHhHHhhC
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT---------ERLIGDAAKNQVAMNPRNTVFDAKRLIG 72 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~---------~~~~G~~A~~~~~~~~~~~~~~~k~llg 72 (549)
++|.||+||.++++++..+..|.+ .+||+|+...+ ..++|.+|..... ..
T Consensus 2 ~~iviD~Gs~~~k~G~~~~~~P~~--------~~ps~v~~~~~~~~~~~~~~~~~~G~~a~~~~~----~~--------- 60 (373)
T smart00268 2 PAIVIDNGSGTIKAGFAGEDEPQV--------VFPSIVGRPKDGKGMVGDAKDTFVGDEAQEKRG----GL--------- 60 (373)
T ss_pred CeEEEECCCCcEEEeeCCCCCCcE--------EccceeeEecccccccCCCcceEecchhhhcCC----Cc---------
Confidence 479999999999999886655533 35888776533 2356776632110 00
Q ss_pred CCCCChHHHhhcccCCeEEeecCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhC--CCcceEEEEecCCCCHH
Q psy3431 73 RKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLG--HSVRDAVITVPAYFNDA 150 (549)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~--~~~~~~vitVPa~f~~~ 150 (549)
.-.+|+. + ..+.--+.+..+++++... .++ ..-..+++|+|...+..
T Consensus 61 -----------~~~~P~~--------------~---G~i~d~~~~e~i~~~~~~~---~l~~~~~~~~vll~~p~~~~~~ 109 (373)
T smart00268 61 -----------ELKYPIE--------------H---GIVENWDDMEKIWDYTFFN---ELRVEPEEHPVLLTEPPMNPKS 109 (373)
T ss_pred -----------eecCCCc--------------C---CEEeCHHHHHHHHHHHHhh---hcCCCCccCeeEEecCCCCCHH
Confidence 0011211 1 1222345556667766653 222 23457899999999999
Q ss_pred HHHHHHHHHH-HcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcc
Q psy3431 151 QRQATKDAGA-IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 229 (549)
Q Consensus 151 qr~~l~~Aa~-~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~ 229 (549)
+|+.+.+.+- ..|++.+.++++|.+|+++++ ..+-+|+|+|+++++++.+. +| .. +.....-..+||.
T Consensus 110 ~r~~~~e~lfE~~~~~~v~~~~~~~~a~~~~g-------~~~~lVVDiG~~~t~v~pv~--~G-~~-~~~~~~~~~~GG~ 178 (373)
T smart00268 110 NREKILEIMFETFNFPALYIAIQAVLSLYASG-------RTTGLVIDSGDGVTHVVPVV--DG-YV-LPHAIKRIDIAGR 178 (373)
T ss_pred HHHHHHHHhhccCCCCeEEEeccHHHHHHhCC-------CCEEEEEecCCCcceEEEEE--CC-EE-chhhheeccCcHH
Confidence 9999988875 679999999999999998875 45789999999999999886 34 21 2222223689999
Q ss_pred hHHHHHHHHHHH
Q psy3431 230 DFDNRLVSHLAE 241 (549)
Q Consensus 230 ~iD~~l~~~l~~ 241 (549)
++|+.|.++|..
T Consensus 179 ~l~~~l~~~l~~ 190 (373)
T smart00268 179 DLTDYLKELLSE 190 (373)
T ss_pred HHHHHHHHHHHh
Confidence 999999998876
No 34
>cd00012 ACTIN Actin; An ubiquitous protein involved in the formation of filaments that are a major component of the cytoskeleton. Interaction with myosin provides the basis of muscular contraction and many aspects of cell motility. Each actin protomer binds one molecule of ATP and either calcium or magnesium ions. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Polymerization is regulated by so-called capping proteins. The ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins.
Probab=99.14 E-value=8.6e-10 Score=113.67 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHH-HHHcCCceeEeecchhHHHHhhhcccCCCCCceEE
Q psy3431 115 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDA-GAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 193 (549)
Q Consensus 115 ~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~A-a~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vl 193 (549)
+.+..+++++....-. .......+++++|..++..+|+.+.+. .+..|++.+.++++|.+|+++++. .+-+
T Consensus 75 ~~~e~~~~~~~~~~l~-~~~~~~~vvl~~p~~~~~~~r~~~~e~lfe~~~~~~v~~~~~~~~a~~~~g~-------~~~l 146 (371)
T cd00012 75 DDMEKIWDHLFFNELK-VNPEEHPVLLTEPPLNPKSNREKTTEIMFETFNVPALYVAIQAVLSLYASGR-------TTGL 146 (371)
T ss_pred HHHHHHHHHHHHHhcC-CCCCCCceEEecCCCCCHHHHHHHHHHhhccCCCCEEEEechHHHHHHhcCC-------CeEE
Confidence 3445566665543211 122356789999999998888888775 566899999999999999988864 5789
Q ss_pred EEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHHHH
Q psy3431 194 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 243 (549)
Q Consensus 194 v~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~~~ 243 (549)
|+|+|+++++++.+.- | .. +........+||.++|+.|.+++..+.
T Consensus 147 VVDiG~~~t~i~pv~~--G-~~-~~~~~~~~~~GG~~l~~~l~~~l~~~~ 192 (371)
T cd00012 147 VVDSGDGVTHVVPVYD--G-YV-LPHAIKRLDLAGRDLTRYLKELLRERG 192 (371)
T ss_pred EEECCCCeeEEEEEEC--C-EE-chhhheeccccHHHHHHHHHHHHHhcC
Confidence 9999999999988752 3 22 222223368999999999999886543
No 35
>PRK13917 plasmid segregation protein ParM; Provisional
Probab=99.09 E-value=2.4e-09 Score=108.31 Aligned_cols=156 Identities=15% Similarity=0.140 Sum_probs=101.7
Q ss_pred EEEEecCCCCHHH-HHHHHHHHHHc------------CCceeEeecchhHHHHhhhcccC------CCCCceEEEEEcCC
Q psy3431 139 AVITVPAYFNDAQ-RQATKDAGAIA------------GLNVMRIVNEPTAAALAYGLDKN------LKGERNVLIFDLGG 199 (549)
Q Consensus 139 ~vitVPa~f~~~q-r~~l~~Aa~~A------------Gl~~~~li~Ep~Aaal~y~~~~~------~~~~~~vlv~D~Gg 199 (549)
++...|..+-..+ +..+++..... -+..+.+++||.+|.+.+..... ......++|+|+|+
T Consensus 115 l~tGLPv~~~~~~~~~~l~k~l~~~~~v~~~g~~~~I~i~~V~V~pQ~~ga~~~~~~~~~g~~~~~~~~~~~ilvIDIG~ 194 (344)
T PRK13917 115 VATGMPSEEIGTDKVAKFEKLLNKSRLIEINGIAVTINVKGVKVVAQPMGTLLDLYLDNDGVVADKAFEEGKVSVIDFGS 194 (344)
T ss_pred EEEcCCHHHHHHHHHHHHHHHhcCceEEEECCEEEEEEEEEEEEecccHHHHHHHHhcccCcccchhcccCcEEEEEcCC
Confidence 3458898774444 35666554321 12457889999999887766432 12456789999999
Q ss_pred CceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHHHH-Hhccc-----ccccc-------------------C
Q psy3431 200 GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF-KRKCR-----SASDV-------------------G 254 (549)
Q Consensus 200 gt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~~~-~~~~~-----~~~e~-------------------~ 254 (549)
||+|++++. ++ .+. ...++....|..++.+.+.+++..+. ..... +..+. +
T Consensus 195 ~TtD~~v~~--~~-~~~-~~~s~s~~~G~~~~~~~I~~~i~~~~~~~~~~~~~ie~~l~~g~i~~~~~~~id~~~~~~~~ 270 (344)
T PRK13917 195 GTTDLDTIQ--NL-KRV-EEESFVIPKGTIDVYKRIASHISKKEEGASITPYMLEKGLEYGACKLNQKTVIDFKDEFYKE 270 (344)
T ss_pred CcEEEEEEe--Cc-EEc-ccccccccchHHHHHHHHHHHHHhhCCCCCCCHHHHHHHHHcCcEEeCCCceEehHHHHHHH
Confidence 999999986 33 332 23334477899999999999885332 11110 00000 0
Q ss_pred C----------------CCCChHHH---------HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcC
Q psy3431 255 D----------------HHGDAHFV---------VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 300 (549)
Q Consensus 255 K----------------~~~~i~~V---------i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~ 300 (549)
. ...+++.| +++.|++.|+. +....||..|-|+|...+|..+.+
T Consensus 271 ~~~~~~~i~~~i~~~~~~~~~~d~IiL~GGGA~ll~~~lk~~f~~--~~~~~~p~~ANa~G~~~~g~~~~~ 339 (344)
T PRK13917 271 QDSVIDEVMSGFEIAVGNINSFDRVIVTGGGANIFFDSLSHWYSD--VEKADESQFANVRGYYKYGELLKN 339 (344)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCEEEEECCcHHHHHHHHHHHcCC--eEEcCChHHHHHHHHHHHHHHHhc
Confidence 0 23344443 88999999964 355689999999999999987664
No 36
>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]
Probab=99.07 E-value=3.1e-09 Score=108.14 Aligned_cols=212 Identities=25% Similarity=0.354 Sum_probs=122.1
Q ss_pred EEEEEcCccceEEEEE--ECC-eEEEEeCCCCCccceeEEEEeCCceEEcHhhHHhhhcCCCchHHHhHHhhCCCCCChH
Q psy3431 3 AIGIDLGTTYSCVAVF--QQG-KVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFDDPK 79 (549)
Q Consensus 3 vvGID~Gtt~s~va~~--~~g-~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~~~~ 79 (549)
++|+|+||+..++.+. .++ ...++.- ...||- ... ++.+.--++..+.. +.++....+..|...++-.
T Consensus 8 iv~LDIGTskV~~lVge~~~~g~i~iig~----g~~~Sr-Gik-~G~I~di~~~~~sI---~~av~~AE~mag~~i~~v~ 78 (418)
T COG0849 8 IVGLDIGTSKVKALVGELRPDGRLNIIGV----GSHPSR-GIK-KGVIVDLDAAAQSI---KKAVEAAERMAGCEIKSVI 78 (418)
T ss_pred EEEEEccCcEEEEEEEEEcCCCeEEEEee----ecccCc-ccc-cceEEcHHHHHHHH---HHHHHHHHHhcCCCcceEE
Confidence 7999999999987764 444 4665532 122221 111 12333333322222 2445556666666643211
Q ss_pred HHhhcccCCeEEeecCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCC------------
Q psy3431 80 IQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYF------------ 147 (549)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f------------ 147 (549)
+.- +-... ........+.+.++ +.++.+++- ++.+.|......+-..++=..|-.|
T Consensus 79 vs~-----sG~~i-~s~~~~g~v~i~~~-~eIt~~DI~-----rvl~~A~~~~~~~~~~ilh~~p~~y~vD~~~~I~dP~ 146 (418)
T COG0849 79 VSL-----SGNHI-KSQNVNGEVSISEE-KEITQEDIE-----RVLEAAKAVAIPPEREILHVIPQEYIVDGQEGIKDPL 146 (418)
T ss_pred EEe-----cccee-EEEeeEEEEEcCCC-CccCHHHHH-----HHHHHHHhhccCCCceEEEEeeeEEEECCccccCCcc
Confidence 100 00000 00112223333443 566666665 3334443333222233333333333
Q ss_pred ----------------CHHHHHHHHHHHHHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeC
Q psy3431 148 ----------------NDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDE 211 (549)
Q Consensus 148 ----------------~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~ 211 (549)
+..--+.+.+|.+.+|+++..++.+|-|+|.+..... ..+-.++++|+||||||+++++-
T Consensus 147 gm~G~rL~v~vhvit~~~~~~~Nl~k~v~r~gl~v~~i~l~plAsa~a~L~~d--EkelGv~lIDiG~GTTdIai~~~-- 222 (418)
T COG0849 147 GMSGVRLEVEVHVITGPKNILENLEKCVERAGLKVDNIVLEPLASALAVLTED--EKELGVALIDIGGGTTDIAIYKN-- 222 (418)
T ss_pred ccccceEEEEEEEEEcchHHHHHHHHHHHHhCCCeeeEEEehhhhhhhccCcc--cHhcCeEEEEeCCCcEEEEEEEC--
Confidence 2234567888999999999999999999998776553 36788999999999999999963
Q ss_pred CcEEEEEEecCCCCCCcchHHHHHHHHHHHHH
Q psy3431 212 GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 243 (549)
Q Consensus 212 ~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~~~ 243 (549)
| .+..+ +-..+||.+++..|..-|.-.+
T Consensus 223 G---~l~~~-~~ipvgG~~vT~DIa~~l~t~~ 250 (418)
T COG0849 223 G---ALRYT-GVIPVGGDHVTKDIAKGLKTPF 250 (418)
T ss_pred C---EEEEE-eeEeeCccHHHHHHHHHhCCCH
Confidence 4 22233 3378999999999998876444
No 37
>TIGR03739 PRTRC_D PRTRC system protein D. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein D. The gray zone, between trusted and noise, includes proteins found in the same genomes as other proteins of the PRTRC systems, but not in the same contiguous gene region.
Probab=98.91 E-value=9.9e-09 Score=103.20 Aligned_cols=108 Identities=19% Similarity=0.246 Sum_probs=82.5
Q ss_pred CcceEEEEecCCCCHHHHHHHHHHHHHc---------CCceeEeecchhHHHHhhhcccC--CCCCceEEEEEcCCCcee
Q psy3431 135 SVRDAVITVPAYFNDAQRQATKDAGAIA---------GLNVMRIVNEPTAAALAYGLDKN--LKGERNVLIFDLGGGTFD 203 (549)
Q Consensus 135 ~~~~~vitVPa~f~~~qr~~l~~Aa~~A---------Gl~~~~li~Ep~Aaal~y~~~~~--~~~~~~vlv~D~Gggt~d 203 (549)
.+..+|+..|..+...+|..+++..... -+..+.+++||.+|.+.+..... ......++|+|+|++|+|
T Consensus 101 ~~~~lv~GLP~~~~~~~k~~l~~~l~g~~~~~~~~~i~I~~V~V~PQ~~Ga~~~~~~~~~~~~~~~~~~lVIDIG~~TtD 180 (320)
T TIGR03739 101 EIDQLVVGLPVATLTTYKSALEKAVTGEHDIGAGKAVTVRKVLAVPQPQGALVHFVAQHGKLLTGKEQSLIIDPGYFTFD 180 (320)
T ss_pred CCCEEEECCCHHHHHHHHHHHHHHhccceecCCceEEEEEEEEEeCCChHHHHHHHhcCCCcccCcCcEEEEecCCCeee
Confidence 4567999999999888999998876532 34568899999999888765432 125677899999999999
Q ss_pred eeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHHHHHhc
Q psy3431 204 VSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRK 246 (549)
Q Consensus 204 vsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~~~~~~ 246 (549)
+.++. ++ .+ +...++....|-.++-+.+.+.+.+++...
T Consensus 181 ~~~~~--~~-~~-~~~~s~s~~~G~~~~~~~I~~~i~~~~g~~ 219 (320)
T TIGR03739 181 WLVAR--GM-RL-VQKRSGSVNGGMSDIYRLLAAEISKDIGTP 219 (320)
T ss_pred eehcc--CC-EE-cccccCCchhHHHHHHHHHHHHHHhhcCCC
Confidence 98774 33 33 344555577899999999998888777654
No 38
>PTZ00280 Actin-related protein 3; Provisional
Probab=98.78 E-value=3.9e-07 Score=95.12 Aligned_cols=123 Identities=17% Similarity=0.084 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHHHc-CCceeEeecchhHHHHhhhcccCC---CCCc
Q psy3431 115 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA-GLNVMRIVNEPTAAALAYGLDKNL---KGER 190 (549)
Q Consensus 115 ~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~~A-Gl~~~~li~Ep~Aaal~y~~~~~~---~~~~ 190 (549)
+.+..+++++....- .....-..+++|.|..++..+|+.+.+.+-.. +++.+.+..+|.++++++...... ....
T Consensus 82 d~~e~l~~~~~~~~L-~~~p~~~~vllte~~~~~~~~Re~l~e~lFE~~~~p~i~~~~~~~lslya~~~~~~~~~~~g~~ 160 (414)
T PTZ00280 82 DLMEKFWEQCIFKYL-RCEPEEHYFILTEPPMNPPENREYTAEIMFETFNVKGLYIAVQAVLALRASWTSKKAKELGGTL 160 (414)
T ss_pred HHHHHHHHHHHHHhh-ccCCCCCceEEeeCCCCcHHHHHHHHHHHhhccCCCeEEEecCHHHhHhhhcccccccccCCce
Confidence 445556666543210 11222346899999999999999988877654 889999999999999876332111 0234
Q ss_pred eEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHHH
Q psy3431 191 NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 242 (549)
Q Consensus 191 ~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~~ 242 (549)
+-||+|+|.++++++.+.- | ..-..+. .-..+||.++++.|.++|.++
T Consensus 161 tglVVDiG~~~T~i~PV~~--G-~~l~~~~-~~~~~GG~~lt~~L~~lL~~~ 208 (414)
T PTZ00280 161 TGTVIDSGDGVTHVIPVVD--G-YVIGSSI-KHIPLAGRDITNFIQQMLRER 208 (414)
T ss_pred eEEEEECCCCceEEEEEEC--C-EEcccce-EEecCcHHHHHHHHHHHHHHc
Confidence 5699999999999987752 4 2211121 225799999999999988653
No 39
>PF06406 StbA: StbA protein; InterPro: IPR009440 This entry represents bacterial plasmid segregation proteins ParM and StbA []. They are involved in the control of plasmid partition and required for the accurate segregation of the plasmid. ; PDB: 3IKY_C 3IKU_I 2ZGZ_B 1MWM_A 1MWK_A 2ZHC_A 2ZGY_A 2QU4_A.
Probab=98.63 E-value=4.7e-08 Score=98.06 Aligned_cols=73 Identities=23% Similarity=0.450 Sum_probs=50.8
Q ss_pred CceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHH
Q psy3431 164 LNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241 (549)
Q Consensus 164 l~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~ 241 (549)
+..+.+++||.||.+.+... ..+...+||+|+||+|+|++++.- + .-.+....++..+|-..+-..+.+.|..
T Consensus 140 I~~V~V~PQ~~~A~~~~~~~--~~~~~~~lVVDIGG~T~Dv~~v~~--~-~~~~~~~~~~~~~Gvs~~~~~I~~~l~~ 212 (318)
T PF06406_consen 140 IKDVEVFPQSVGAVFDALMD--LDEDESVLVVDIGGRTTDVAVVRG--G-LPDISKCSGTPEIGVSDLYDAIAQALRS 212 (318)
T ss_dssp EEEEEEEESSHHHHHHHHHT--S-TTSEEEEEEE-SS-EEEEEEEG--G-G--EEEEEEETTSSTHHHHHHHHHHTT-
T ss_pred EeeEEEEcccHHHHHHHHHh--hcccCcEEEEEcCCCeEEeeeecC--C-ccccchhccCCchhHHHHHHHHHHHHHH
Confidence 35688999999999887655 334578999999999999999862 2 2223344555688988888888777665
No 40
>PF00022 Actin: Actin; InterPro: IPR004000 Actin [, ] is a ubiquitous protein involved in the formation of filaments that are major components of the cytoskeleton. These filaments interact with myosin to produce a sliding effect, which is the basis of muscular contraction and many aspects of cell motility, including cytokinesis. Each actin protomer binds one molecule of ATP and has one high affinity site for either calcium or magnesium ions, as well as several low affinity sites. Actin exists as a monomer in low salt concentrations, but filaments form rapidly as salt concentration rises, with the consequent hydrolysis of ATP. Actin from many sources forms a tight complex with deoxyribonuclease (DNase I) although the significance of this is still unknown. The formation of this complex results in the inhibition of DNase I activity, and actin loses its ability to polymerise. It has been shown that an ATPase domain of actin shares similarity with ATPase domains of hexokinase and hsp70 proteins [, ]. In vertebrates there are three groups of actin isoforms: alpha, beta and gamma. The alpha actins are found in muscle tissues and are a major constituent of the contractile apparatus. The beta and gamma actins co-exists in most cell types as components of the cytoskeleton and as mediators of internal cell motility. In plants there are many isoforms which are probably involved in a variety of functions such as cytoplasmic streaming, cell shape determination, tip growth, graviperception, cell wall deposition, etc. Recently some divergent actin-like proteins have been identified in several species. These proteins include centractin (actin-RPV) from mammals, fungi yeast ACT5, Neurospora crassa ro-4) and Pneumocystis carinii, which seems to be a component of a multi-subunit centrosomal complex involved in microtubule based vesicle motility (this subfamily is known as ARP1); ARP2 subfamily, which includes chicken ACTL, Saccharomyces cerevisiae ACT2, Drosophila melanogaster 14D and Caenorhabditis elegans actC; ARP3 subfamily, which includes actin 2 from mammals, Drosophila 66B, yeast ACT4 and Schizosaccharomyces pombe act2; and ARP4 subfamily, which includes yeast ACT3 and Drosophila 13E.; PDB: 2OAN_B 1HLU_A 2BTF_A 3UB5_A 3U4L_A 4EFH_A 1YVN_A 1YAG_A 1D4X_A 1MDU_B ....
Probab=98.58 E-value=8.9e-07 Score=92.10 Aligned_cols=180 Identities=18% Similarity=0.229 Sum_probs=112.6
Q ss_pred CEEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCC-----ceEEcHhhHHhhhcCCCchHHHhHHhhCCCCC
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-----ERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFD 76 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~-----~~~~G~~A~~~~~~~~~~~~~~~k~llg~~~~ 76 (549)
.+|-||+|+.++++++..+..|.. .+||++..... ..++|..+... .+...+
T Consensus 5 ~~vViD~Gs~~~k~G~age~~P~~--------v~ps~~~~~~~~~~~~~~~~g~~~~~~---~~~~~~------------ 61 (393)
T PF00022_consen 5 KPVVIDNGSSTIKAGFAGEDLPRV--------VIPSVVGRPRDKNSSNDYYVGDEALSP---RSNLEL------------ 61 (393)
T ss_dssp SEEEEEECSSEEEEEETTSSS-SE--------EEESEEEEESSSSSSSSCEETHHHHHT---GTGEEE------------
T ss_pred CEEEEECCCceEEEEECCCCCCCC--------cCCCccccccccccceeEEeecccccc---hhheee------------
Confidence 578999999999999976655532 35888776544 34677763221 000000
Q ss_pred ChHHHhhcccCCeEEeecCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHH
Q psy3431 77 DPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATK 156 (549)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~ 156 (549)
..|+ ..| .+.--+.+..+++++.... -........++++.|..++..+|+.+.
T Consensus 62 ---------~~p~--------------~~g---~i~~~~~~e~i~~~~~~~~-l~~~~~~~~vll~~~~~~~~~~r~~l~ 114 (393)
T PF00022_consen 62 ---------RSPI--------------ENG---VIVDWDALEEIWDYIFSNL-LKVDPSDHPVLLTEPPFNPRSQREKLA 114 (393)
T ss_dssp ---------EESE--------------ETT---EESSHHHHHHHHHHHHHTT-T-SSGGGSEEEEEESTT--HHHHHHHH
T ss_pred ---------eeec--------------ccc---ccccccccccccccccccc-cccccccceeeeeccccCCchhhhhhh
Confidence 0011 011 2222344555666665432 112234557999999999999999877
Q ss_pred HHHH-HcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHH
Q psy3431 157 DAGA-IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRL 235 (549)
Q Consensus 157 ~Aa~-~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l 235 (549)
+.+- ..|++.+.++++|.+|+++++.. +-+|+|+|.+.+.++.+. +| .. +........+||.+++..|
T Consensus 115 e~lfE~~~~~~v~~~~~~~~a~~~~g~~-------tglVVD~G~~~t~v~pV~--dG-~~-~~~~~~~~~~GG~~lt~~l 183 (393)
T PF00022_consen 115 EILFEKFGVPSVYFIPSPLLALYASGRT-------TGLVVDIGYSSTSVVPVV--DG-YV-LPHSIKRSPIGGDDLTEYL 183 (393)
T ss_dssp HHHHHTS--SEEEEEEHHHHHHHHTTBS-------SEEEEEESSS-EEEEEEE--TT-EE--GGGBEEES-SHHHHHHHH
T ss_pred hhhhcccccceeeeeecccccccccccc-------cccccccceeeeeeeeee--ec-cc-cccccccccccHHHHHHHH
Confidence 7665 66999999999999999888654 459999999999888774 34 21 1122223679999999999
Q ss_pred HHHHHHH
Q psy3431 236 VSHLAEE 242 (549)
Q Consensus 236 ~~~l~~~ 242 (549)
.+.|.++
T Consensus 184 ~~lL~~~ 190 (393)
T PF00022_consen 184 KELLKER 190 (393)
T ss_dssp HHHHHHT
T ss_pred HHHHHhh
Confidence 9988874
No 41
>PTZ00004 actin-2; Provisional
Probab=98.53 E-value=3e-06 Score=87.37 Aligned_cols=114 Identities=14% Similarity=0.156 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHHHHh--CCCcceEEEEecCCCCHHHHHHHHHHH-HHcCCceeEeecchhHHHHhhhcccCCCCCce
Q psy3431 115 EISSMVLTKMKETAEAYL--GHSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERN 191 (549)
Q Consensus 115 ~v~~~~L~~l~~~a~~~~--~~~~~~~vitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~ 191 (549)
+....++.++.. ..+ ......+++|-|..++..+|+.+.+.+ +..+++.+.++++|.+++++++. .+
T Consensus 81 d~~e~i~~~~~~---~~l~v~~~~~pvllte~~~~~~~~r~~~~e~lFE~~~~~~~~~~~~~~ls~ya~g~-------~t 150 (378)
T PTZ00004 81 DDMEKIWHHTFY---NELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETHNVPAMYVAIQAVLSLYASGR-------TT 150 (378)
T ss_pred HHHHHHHHHHHH---hhcccCCccCcceeecCCCCcHHHHHHHHHHHHhhcCCceEEeeccHHHHHHhcCC-------ce
Confidence 444556666432 122 223456789999999999998876665 45799999999999999877643 45
Q ss_pred EEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHHH
Q psy3431 192 VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 242 (549)
Q Consensus 192 vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~~ 242 (549)
-+|+|+|.+.++++.+. +| .. +.......++||.++++.|.+.|..+
T Consensus 151 glVVDiG~~~t~v~pV~--dG-~~-l~~~~~~~~~GG~~lt~~L~~lL~~~ 197 (378)
T PTZ00004 151 GIVLDSGDGVSHTVPIY--EG-YS-LPHAIHRLDVAGRDLTEYMMKILHER 197 (378)
T ss_pred EEEEECCCCcEEEEEEE--CC-EE-eecceeeecccHHHHHHHHHHHHHhc
Confidence 69999999999998774 23 22 22222236799999999999987543
No 42
>PTZ00281 actin; Provisional
Probab=98.48 E-value=3.6e-06 Score=86.66 Aligned_cols=114 Identities=13% Similarity=0.138 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH-HHcCCceeEeecchhHHHHhhhcccCCCCCceEEE
Q psy3431 116 ISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLI 194 (549)
Q Consensus 116 v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv 194 (549)
.+..+++++.... -.....-..+++|-|..++..+|+.+.+.+ +..+++.+.+...|.+++++++. .+-+|
T Consensus 82 ~~e~l~~~~f~~~-l~v~p~~~pvllte~~~~~~~~re~l~e~lFE~~~vp~~~~~~~~~ls~ya~g~-------~tglV 153 (376)
T PTZ00281 82 DMEKIWHHTFYNE-LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR-------TTGIV 153 (376)
T ss_pred HHHHHHHHHHHhh-ccCCCccCeEEEecCCCCcHHHHHHHHHHHhcccCCceeEeeccHHHHHHhcCC-------ceEEE
Confidence 3445555554311 012233457889999999999999988754 55788899999999999877653 46699
Q ss_pred EEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHH
Q psy3431 195 FDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241 (549)
Q Consensus 195 ~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~ 241 (549)
+|+|.+.+.++-+.- | +.+........+||.++++.|.+.|..
T Consensus 154 VDiG~~~t~v~PV~d--G--~~~~~~~~~~~~GG~~lt~~L~~lL~~ 196 (376)
T PTZ00281 154 MDSGDGVSHTVPIYE--G--YALPHAILRLDLAGRDLTDYMMKILTE 196 (376)
T ss_pred EECCCceEEEEEEEe--c--ccchhheeeccCcHHHHHHHHHHHHHh
Confidence 999999999875542 3 122222223679999999999987754
No 43
>PTZ00452 actin; Provisional
Probab=98.47 E-value=5.5e-06 Score=85.11 Aligned_cols=114 Identities=15% Similarity=0.097 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHH-HcCCceeEeecchhHHHHhhhcccCCCCCceEEE
Q psy3431 116 ISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGA-IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLI 194 (549)
Q Consensus 116 v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~-~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv 194 (549)
.+..+++|+....- .....-..+++|-|...+..+|+.+.+.+- ..+++.+.+.+.|.+++++++. .+-+|
T Consensus 81 ~~e~iw~~~f~~~l-~v~p~~~pvlitE~~~~~~~~Re~l~eilFE~~~vp~~~~~~~~~lslya~g~-------~tglV 152 (375)
T PTZ00452 81 DIEIIWHHAFYNEL-CMSPEDQPVFMTDAPMNSKFNRERMTQIMFETFNTPCLYISNEAVLSLYTSGK-------TIGLV 152 (375)
T ss_pred HHHHHHHHHHHhhc-CCCcccCceeeecCCCCCHHHHHHHHHHHhhccCCceEEEechHHHHHHHCCC-------ceeee
Confidence 34456665532211 123344678999999999999999877664 4688888999999999877643 45699
Q ss_pred EEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHH
Q psy3431 195 FDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241 (549)
Q Consensus 195 ~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~ 241 (549)
+|+|.+.+.++-+. +| .. +.....-..+||.++++.|.+.|.+
T Consensus 153 VDiG~~~t~v~PV~--dG-~~-l~~~~~r~~~gG~~lt~~L~~lL~~ 195 (375)
T PTZ00452 153 VDSGEGVTHCVPVF--EG-HQ-IPQAITKINLAGRLCTDYLTQILQE 195 (375)
T ss_pred ecCCCCcceEEEEE--CC-EE-eccceEEeeccchHHHHHHHHHHHh
Confidence 99999999988765 24 22 2222222579999999999887754
No 44
>PTZ00466 actin-like protein; Provisional
Probab=98.39 E-value=1.2e-05 Score=82.78 Aligned_cols=114 Identities=13% Similarity=0.153 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH-HHcCCceeEeecchhHHHHhhhcccCCCCCceEE
Q psy3431 115 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 193 (549)
Q Consensus 115 ~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vl 193 (549)
+.+..+++++.+.. .....-..+++|-|+.++..+|+.+.+.+ +..+++.+.+.++|.+++++++. .+-+
T Consensus 87 d~~e~iw~~~f~~l--~v~~~~~pvllte~~~~~~~~re~~~e~lFE~~~~p~~~~~~~~~lsl~a~g~-------~tgl 157 (380)
T PTZ00466 87 NDMENIWIHVYNSM--KINSEEHPVLLTEAPLNPQKNKEKIAEVFFETFNVPALFISIQAILSLYSCGK-------TNGT 157 (380)
T ss_pred HHHHHHHHHHHhhc--ccCCccCeEEEecCccccHHHHHHHHHHHhccCCCCeEEEecchHHHHHhcCC-------ceEE
Confidence 34445555554221 12223456889999999999999986655 45688889999999999877653 4679
Q ss_pred EEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHH
Q psy3431 194 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241 (549)
Q Consensus 194 v~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~ 241 (549)
|+|+|.+.+.++-+. +| .. +........+||.++++-|.+.|.+
T Consensus 158 VVD~G~~~t~v~PV~--~G-~~-~~~~~~~~~~GG~~lt~~L~~lL~~ 201 (380)
T PTZ00466 158 VLDCGDGVCHCVSIY--EG-YS-ITNTITRTDVAGRDITTYLGYLLRK 201 (380)
T ss_pred EEeCCCCceEEEEEE--CC-EE-eecceeEecCchhHHHHHHHHHHHh
Confidence 999999999987664 24 22 2222223589999999999887753
No 45
>KOG0679|consensus
Probab=98.30 E-value=2.7e-05 Score=76.22 Aligned_cols=116 Identities=16% Similarity=0.233 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHH-HHcCCceeEeecchhHHHHhhhcccCCCCCceEE
Q psy3431 115 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVL 193 (549)
Q Consensus 115 ~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vl 193 (549)
++..++++|..+.-- ..+..-.-++||-|++=+.+.|+.+.+.+ +...++...|..+|+++|++-| ..+-|
T Consensus 86 D~~~~~w~~~~~~~L-k~~p~ehP~litEp~wN~~~~Rek~~ElmFE~~nvPAf~L~k~~v~~AFA~G-------rstal 157 (426)
T KOG0679|consen 86 DLFEMQWRYAYKNQL-KVNPEEHPVLITEPPWNTRANREKLTELMFEKLNVPAFYLAKTAVCTAFANG-------RSTAL 157 (426)
T ss_pred HHHHHHHHHHHhhhh-hcCccccceeeecCCCCcHHHHHHHHHHHHhhcCCceEEEechHHHHHHhcC-------CCceE
Confidence 455666666653211 12333456899999988889998877655 5567788899999999987654 35679
Q ss_pred EEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHHH
Q psy3431 194 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 242 (549)
Q Consensus 194 v~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~~ 242 (549)
|+|+|+++|.++-+. +| .+--.+... ..+||+.++..+.+.|..+
T Consensus 158 VvDiGa~~~svsPV~--DG-~Vlqk~vvk-s~laGdFl~~~~~q~l~~~ 202 (426)
T KOG0679|consen 158 VVDIGATHTSVSPVH--DG-YVLQKGVVK-SPLAGDFLNDQCRQLLEPK 202 (426)
T ss_pred EEEecCCCceeeeee--cc-eEeeeeeEe-cccchHHHHHHHHHHHhhc
Confidence 999999999998775 23 332233333 7899999999999888765
No 46
>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional
Probab=98.23 E-value=6.6e-06 Score=83.98 Aligned_cols=87 Identities=23% Similarity=0.323 Sum_probs=58.1
Q ss_pred cceEEEEecCCCCHHHHHHHHHHHH--------HcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEE
Q psy3431 136 VRDAVITVPAYFNDAQRQATKDAGA--------IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL 207 (549)
Q Consensus 136 ~~~~vitVPa~f~~~qr~~l~~Aa~--------~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~ 207 (549)
..-.+||.+...-.+.++.+..+.. .||++...++. |-|++.+.... +.+..++++|+||||++++++
T Consensus 88 ~~ahIITg~~~~~~Nl~~~v~~~~~~~gdfVVA~AG~~le~iva-~~ASg~avLse---Eke~gVa~IDIGgGTT~iaVf 163 (475)
T PRK10719 88 SGAVIITGETARKENAREVVMALSGSAGDFVVATAGPDLESIIA-GKGAGAQTLSE---ERNTRVLNIDIGGGTANYALF 163 (475)
T ss_pred ccEEEEEechhHHHHHHHHHHHhcccccceeeeccCccHHHhhh-HHHhhHHHhhh---hccCceEEEEeCCCceEEEEE
Confidence 3346888877655554444444222 26666666666 88888766532 467889999999999999999
Q ss_pred EeeCCcEEEEEEecCCCCCCcchHH
Q psy3431 208 SIDEGALFEVRSTAGDTHLGGEDFD 232 (549)
Q Consensus 208 ~~~~~~~~~v~~~~~d~~lGG~~iD 232 (549)
.- | .+..+.. ..+||+.+.
T Consensus 164 ~~--G---~l~~T~~-l~vGG~~IT 182 (475)
T PRK10719 164 DA--G---KVIDTAC-LNVGGRLIE 182 (475)
T ss_pred EC--C---EEEEEEE-EecccceEE
Confidence 73 4 2333333 778998875
No 47
>TIGR01175 pilM type IV pilus assembly protein PilM. This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.
Probab=98.17 E-value=2.5e-05 Score=79.85 Aligned_cols=85 Identities=16% Similarity=0.196 Sum_probs=61.3
Q ss_pred CHHHHHHHHHHHHHcCCceeEeecchhHHHHhhh-----cccCCCCCc-eEEEEEcCCCceeeeEEEeeCCcEEEEEEec
Q psy3431 148 NDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG-----LDKNLKGER-NVLIFDLGGGTFDVSILSIDEGALFEVRSTA 221 (549)
Q Consensus 148 ~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~-----~~~~~~~~~-~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~ 221 (549)
.....+.+.++++.||++...+-.+|.|.+-.+. +... .... .++++|+|+++++++++.- | .+.. .
T Consensus 141 ~~~~v~~~~~~~~~aGl~~~~id~~~~Al~~~~~~~~~~~~~~-~~~~~~~~lvdiG~~~t~l~i~~~--g-~~~~---~ 213 (348)
T TIGR01175 141 RKEVVDSRLHALKLAGLEPKVVDVESFALLRAWRLLGEQLASR-TYRLTDAALVDIGATSSTLNLLHP--G-RMLF---T 213 (348)
T ss_pred cHHHHHHHHHHHHHcCCceEEEecHHHHHHHHHHHHHhhCccc-cccCceEEEEEECCCcEEEEEEEC--C-eEEE---E
Confidence 3456788899999999999999999998876553 1111 2233 4999999999999999962 3 2211 1
Q ss_pred CCCCCCcchHHHHHHHHH
Q psy3431 222 GDTHLGGEDFDNRLVSHL 239 (549)
Q Consensus 222 ~d~~lGG~~iD~~l~~~l 239 (549)
....+||.+|++.+.+.+
T Consensus 214 r~i~~G~~~i~~~i~~~~ 231 (348)
T TIGR01175 214 REVPFGTRQLTSELSRAY 231 (348)
T ss_pred EEeechHHHHHHHHHHHc
Confidence 226699999998886543
No 48
>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A.
Probab=97.70 E-value=0.00021 Score=72.72 Aligned_cols=85 Identities=20% Similarity=0.259 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHcCCceeEeecchhHHHHhhhcc-cCC---CCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCC
Q psy3431 149 DAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNL---KGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDT 224 (549)
Q Consensus 149 ~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~-~~~---~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~ 224 (549)
...-....++++.|||++..+=-+|.|.+-.|... ... .....++++|+|+.++.++++. +| .+... ...
T Consensus 135 k~~v~~~~~~~~~aGL~~~~vDv~~~Al~r~~~~~~~~~~~~~~~~~~~lvdiG~~~t~~~i~~--~g-~~~f~---R~i 208 (340)
T PF11104_consen 135 KEIVESYVELFEEAGLKPVAVDVEAFALARLFEFLEPQLPDEEDAETVALVDIGASSTTVIIFQ--NG-KPIFS---RSI 208 (340)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEEHHHHGGGGGHHHHHTST----T-EEEEEEE-SS-EEEEEEE--TT-EEEEE---EEE
T ss_pred HHHHHHHHHHHHHcCCceEEEeehHHHHHHHHHHHHHhCCcccccceEEEEEecCCeEEEEEEE--CC-EEEEE---EEE
Confidence 45567788999999999977755666655444332 111 1346799999999999999986 34 22211 125
Q ss_pred CCCcchHHHHHHHHH
Q psy3431 225 HLGGEDFDNRLVSHL 239 (549)
Q Consensus 225 ~lGG~~iD~~l~~~l 239 (549)
.+||.++++.+.+.+
T Consensus 209 ~~G~~~l~~~i~~~~ 223 (340)
T PF11104_consen 209 PIGGNDLTEAIAREL 223 (340)
T ss_dssp S-SHHHHHHHHHHHT
T ss_pred eeCHHHHHHHHHHhc
Confidence 799999999999886
No 49
>COG5277 Actin and related proteins [Cytoskeleton]
Probab=97.42 E-value=0.0026 Score=66.20 Aligned_cols=100 Identities=16% Similarity=0.239 Sum_probs=71.5
Q ss_pred CcceEEEEecCCCCHHHHHHHHHHH-HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCc
Q psy3431 135 SVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGA 213 (549)
Q Consensus 135 ~~~~~vitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~ 213 (549)
.-..+++|-|..+...+|..+.+.+ +...++.+.+..++.+++++.+.. ..+.+|+|+|.+.|+++-+-- |
T Consensus 105 ~~~pllltep~~n~~~~re~~~e~~fE~~~vp~~~~~~~~~l~~ya~g~~-----~~~g~ViD~G~~~t~v~PV~D--G- 176 (444)
T COG5277 105 EEHPLLLTEPPLNPPSNREKITELLFETLNVPALYLAIQAVLSLYASGSS-----DETGLVIDSGDSVTHVIPVVD--G- 176 (444)
T ss_pred cCCceEEeccCCCcHHHHHHHHHHHHHhcCCcceEeeHHHHHHHHhcCCC-----CCceEEEEcCCCceeeEeeec--c-
Confidence 3457899999999999998766654 455666667777777666555432 257899999999999986642 2
Q ss_pred EEEEEEecCCCCCCcchHHHHHHHHHHHHH
Q psy3431 214 LFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 243 (549)
Q Consensus 214 ~~~v~~~~~d~~lGG~~iD~~l~~~l~~~~ 243 (549)
+.+.....-..+||++++..|.+.|....
T Consensus 177 -~~l~~a~~ri~~gG~~it~~l~~lL~~~~ 205 (444)
T COG5277 177 -IVLPKAVKRIDIGGRDITDYLKKLLREKY 205 (444)
T ss_pred -ccccccceeeecCcHHHHHHHHHHHhhcc
Confidence 22223333378999999999988887644
No 50
>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative. This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.
Probab=97.31 E-value=0.0018 Score=62.67 Aligned_cols=66 Identities=17% Similarity=0.180 Sum_probs=42.3
Q ss_pred EeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHH
Q psy3431 168 RIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 240 (549)
Q Consensus 168 ~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~ 240 (549)
..++|.+|-+.......+ ..=.|+|+||..+-+..++ +| .+.-.........|+-.|.+.+.+.|-
T Consensus 73 ~~~~ei~~~~~g~~~~~~----~~~~vidiGgqd~k~i~~~--~g-~~~~~~~n~~ca~Gtg~f~e~~a~~l~ 138 (248)
T TIGR00241 73 KIVTEISCHGKGANYLAP----EARGVIDIGGQDSKVIKID--DG-KVDDFTMNDKCAAGTGRFLEVTARRLG 138 (248)
T ss_pred CceEEhhHHHHHHHHHCC----CCCEEEEecCCeeEEEEEC--CC-cEeeeeecCcccccccHHHHHHHHHcC
Confidence 367888887654433322 2225999999988888776 55 333223344466788888888876654
No 51
>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon. The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.
Probab=97.13 E-value=0.0042 Score=63.87 Aligned_cols=88 Identities=25% Similarity=0.306 Sum_probs=54.2
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCceeEee---cchhHHHHhhhccc-CCCCCceEEEEEcCCCceeeeEEEeeCCc
Q psy3431 138 DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIV---NEPTAAALAYGLDK-NLKGERNVLIFDLGGGTFDVSILSIDEGA 213 (549)
Q Consensus 138 ~~vitVPa~f~~~qr~~l~~Aa~~AGl~~~~li---~Ep~Aaal~y~~~~-~~~~~~~vlv~D~Gggt~dvsv~~~~~~~ 213 (549)
-+.||==+.-.+++|..+..-+..||==++.-- -|..=|+-..|-.. ..+....|+=+|+||||+.+++++- |
T Consensus 87 AVIITGETArKeNA~~v~~~Ls~~aGDFVVATAGPdLEsiiAgkGsGA~~~S~~~~~~V~NiDIGGGTtN~avf~~--G- 163 (473)
T PF06277_consen 87 AVIITGETARKENAREVLHALSGFAGDFVVATAGPDLESIIAGKGSGAAALSKEHHTVVANIDIGGGTTNIAVFDN--G- 163 (473)
T ss_pred cEEEecchhhhhhHHHHHHHHHHhcCCEEEEccCCCHHHHHhccCccHHHHhhhhCCeEEEEEeCCCceeEEEEEC--C-
Confidence 356666666777888888888888872111100 12222221111111 1124677888999999999999973 4
Q ss_pred EEEEEEecCCCCCCcchH
Q psy3431 214 LFEVRSTAGDTHLGGEDF 231 (549)
Q Consensus 214 ~~~v~~~~~d~~lGG~~i 231 (549)
++..+.. -++||+.|
T Consensus 164 --~v~~T~c-l~IGGRLi 178 (473)
T PF06277_consen 164 --EVIDTAC-LDIGGRLI 178 (473)
T ss_pred --EEEEEEE-EeeccEEE
Confidence 5566665 78999876
No 52
>KOG0797|consensus
Probab=97.06 E-value=0.0075 Score=61.54 Aligned_cols=148 Identities=18% Similarity=0.233 Sum_probs=100.7
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHHhCCCc-----ceEEEEecCCCCHHHHH-HHHHHHHHcCCceeEeecchhHHHHhhhc
Q psy3431 109 KTFAPEEISSMVLTKMKETAEAYLGHSV-----RDAVITVPAYFNDAQRQ-ATKDAGAIAGLNVMRIVNEPTAAALAYGL 182 (549)
Q Consensus 109 ~~~~~~~v~~~~L~~l~~~a~~~~~~~~-----~~~vitVPa~f~~~qr~-~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~ 182 (549)
...|..++++.+-+-+.-...+.++-+. -.+|+.||-.|.....+ .+.-.....||+...++-|+.||.+..|+
T Consensus 195 ~y~Slq~l~~dlt~il~yaL~e~L~Ip~~kl~qy~aVlVVpD~f~r~hveefl~ilL~eL~F~~~~v~QESlaatfGaGl 274 (618)
T KOG0797|consen 195 PYYSLQRLCEDLTAILDYALLEKLHIPHKKLFQYHAVLVVPDTFDRRHVEEFLTILLGELGFNSAVVHQESLAATFGAGL 274 (618)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhcCCChhHhcceeEEEEecchhhHHHHHHHHHHHHHHhccceEEEEhhhhHHHhcCCc
Confidence 5667788877766555555555565443 36899999999876654 44555667899999999999999876665
Q ss_pred ccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHHHHHhccc-cccccCCCCCChH
Q psy3431 183 DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKCR-SASDVGDHHGDAH 261 (549)
Q Consensus 183 ~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~~~~~~~~-~~~e~~K~~~~i~ 261 (549)
. .-.|||+|+-++.++.|+- | +....+.--...||.||++.|+-++.. ..+. ..|.- ...++
T Consensus 275 s-------s~CVVdiGAQkTsIaCVEd--G--vs~~ntri~L~YGGdDitr~f~~ll~r---s~FPy~d~~v---~~~~d 337 (618)
T KOG0797|consen 275 S-------SACVVDIGAQKTSIACVED--G--VSLPNTRIILPYGGDDITRCFLWLLRR---SGFPYQDCDV---LAPID 337 (618)
T ss_pred c-------ceeEEEccCcceeEEEeec--C--ccccCceEEeccCCchHHHHHHHHHHh---cCCCcccccc---ccccc
Confidence 4 3489999999999888863 3 111122222568999999999876654 2222 33321 22455
Q ss_pred HHHHHHHHhhhC
Q psy3431 262 FVVQSLLQNFFC 273 (549)
Q Consensus 262 ~Vi~~~l~~~f~ 273 (549)
-.+-+.|++-|.
T Consensus 338 ~lLl~~LKe~Fc 349 (618)
T KOG0797|consen 338 WLLLNQLKEKFC 349 (618)
T ss_pred HHHHHHHHHHhc
Confidence 557777888774
No 53
>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit. Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.
Probab=96.75 E-value=0.11 Score=50.70 Aligned_cols=33 Identities=24% Similarity=0.226 Sum_probs=26.5
Q ss_pred HHHHHHhhhCCCCCC-CCCChhhHHHccHHHHHHH
Q psy3431 264 VQSLLQNFFCGKSLN-LSINPDEAVAYGAAVQAAI 297 (549)
Q Consensus 264 i~~~l~~~f~~~~~~-~~~~~~eava~Gaa~~a~~ 297 (549)
+.+.+++.+ +.++. .+.+|..+-|+|||++|..
T Consensus 255 l~~al~~~L-g~~v~~~p~~p~~~GAlGAAL~A~~ 288 (293)
T TIGR03192 255 VVKRIERIL-GIKAVDTKIDSQIAGALGAALFGYT 288 (293)
T ss_pred HHHHHHHHh-CCCceeCCCCccHHHHHHHHHHHHH
Confidence 778888888 44554 5778999999999999964
No 54
>PF07520 SrfB: Virulence factor SrfB; InterPro: IPR009216 This entry represents proteins of unknown function. It has been shown in Salmonella enterica that srfB is one of the genes activated by the global signal transduction/regulatory system SsrA/B []. This activation takes place within eukaryotic cells. The activated genes include pathogenicity island 2 (SPI-2) genes and at least 10 other genes (srfB is one of them) which are believed to be horizontally acquired, and to be involved in virulence/pathogenicity [].
Probab=96.74 E-value=0.017 Score=64.59 Aligned_cols=197 Identities=19% Similarity=0.313 Sum_probs=114.4
Q ss_pred EEcHhhHHhhhc----CCCchHHHhHHhh--------CCCCCChHHHhh----cccCCeE-EeecCCCceEEE-EEcC--
Q psy3431 47 LIGDAAKNQVAM----NPRNTVFDAKRLI--------GRKFDDPKIQQD----MKHWPFT-VVNDRSKPKIQV-EFKG-- 106 (549)
Q Consensus 47 ~~G~~A~~~~~~----~~~~~~~~~k~ll--------g~~~~~~~~~~~----~~~~~~~-~~~~~~~~~~~v-~~~~-- 106 (549)
-+|.+|...+.. .....+++.||+| |..|+....... ....|+. .+++.|.+-+.+ ....
T Consensus 331 RVG~EA~RLa~~r~GtEg~TGlSSPKRYLWDe~~~~q~WRFn~~~~~~~~eP~ata~p~~~liN~~G~~L~~l~~~~~r~ 410 (1002)
T PF07520_consen 331 RVGPEAARLASQRRGTEGSTGLSSPKRYLWDERPYEQGWRFNSAYVKSQNEPLATAAPFTNLINDDGQPLYQLDPEDERL 410 (1002)
T ss_pred eecHHHHHHHHHhcCCccccCCCCchhhccCCCccCCCcccCCCCCCCccCchhhhHHHHHhhcccCcchhhhcCccccC
Confidence 378888776543 3445567777776 233332221110 0111221 224556554444 1111
Q ss_pred --ceeeeCHHHHHHHHHHHHHHHHHHHhCC--------------CcceEEEEecCCCCHHHHHHHHHHHHHc--------
Q psy3431 107 --ERKTFAPEEISSMVLTKMKETAEAYLGH--------------SVRDAVITVPAYFNDAQRQATKDAGAIA-------- 162 (549)
Q Consensus 107 --~~~~~~~~~v~~~~L~~l~~~a~~~~~~--------------~~~~~vitVPa~f~~~qr~~l~~Aa~~A-------- 162 (549)
-.-.||-.-++.++|..+.-+|-.+++. ....+++|||......+|+.++++++.|
T Consensus 411 pvf~p~ySRSSLMtfML~EiL~QAL~QINSpa~R~r~~~~~~PR~LR~IILT~P~AMPk~Er~ifr~r~~~Ai~LvWk~l 490 (1002)
T PF07520_consen 411 PVFSPHYSRSSLMTFMLSEILAQALMQINSPAQRLRRGHSDAPRRLRRIILTLPPAMPKPEREIFRRRMEEAIGLVWKAL 490 (1002)
T ss_pred ccccccccHHHHHHHHHHHHHHHHHHHhcCHHHHhhcccCCCChhhhheeEECCCCCCHHHHHHHHHHHHHHHHHHHHHc
Confidence 1235677778888888888777666542 3568999999999999999999998877
Q ss_pred CCc---------------------eeEeecchhHHHHhhhcc------------------cCC---------CCCceEEE
Q psy3431 163 GLN---------------------VMRIVNEPTAAALAYGLD------------------KNL---------KGERNVLI 194 (549)
Q Consensus 163 Gl~---------------------~~~li~Ep~Aaal~y~~~------------------~~~---------~~~~~vlv 194 (549)
|.. +..=-+|.||.=+-|.++ +.. ...-+|.-
T Consensus 491 Gw~~~~~~~~~~~~~~~~~~~~P~v~~~WDEATC~QlVyLYnE~~~~fgG~~~~FF~~~~rp~~~~~~~~~~~~slriAS 570 (1002)
T PF07520_consen 491 GWHPWDDDFDTNKDREKSWVPLPEVQMEWDEATCGQLVYLYNEIQVKFGGRAEEFFALMARPDRQPAPGEDPGPSLRIAS 570 (1002)
T ss_pred CCCCCCCCcccccccccccCCCCceeEEeecceeeeeeehhHHHHHHcCCCHHHHHHHhcCCCccccccCCCCCceEEEE
Confidence 431 111235666654444221 111 12346888
Q ss_pred EEcCCCceeeeEEEee----CCcEEEEE----EecCCCCCCcchHHHHH-HHHHHHHHH
Q psy3431 195 FDLGGGTFDVSILSID----EGALFEVR----STAGDTHLGGEDFDNRL-VSHLAEEFK 244 (549)
Q Consensus 195 ~D~Gggt~dvsv~~~~----~~~~~~v~----~~~~d~~lGG~~iD~~l-~~~l~~~~~ 244 (549)
+|+||||||+.|-++. .|....+. -..| -.+.|+||=..+ ..++...+.
T Consensus 571 IDIGGGTTDL~It~Y~ld~G~g~nv~I~P~q~FReG-FkvAGDDiLldVI~~~VlPal~ 628 (1002)
T PF07520_consen 571 IDIGGGTTDLMITQYRLDDGQGSNVKITPEQLFREG-FKVAGDDILLDVIQRIVLPALQ 628 (1002)
T ss_pred EecCCCcceeeEEEEEeccCCcceeEECcchhhhhh-cccccHHHHHHHHHHHhHHHHH
Confidence 9999999999998886 33233332 2233 578888875544 444444443
No 55
>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.
Probab=96.67 E-value=0.082 Score=53.81 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=27.2
Q ss_pred HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHH
Q psy3431 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 296 (549)
Q Consensus 264 i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~ 296 (549)
+.+.+++.+ +.++..+.+|..+-|+|||++|.
T Consensus 371 vv~ale~~L-g~~iivPe~pq~~GAiGAAL~A~ 402 (404)
T TIGR03286 371 LVKALGDLL-GIEVVVPEYSQYIGAVGAALLAS 402 (404)
T ss_pred HHHHHHHHh-CCcEEECCcccHHHHHHHHHHhc
Confidence 677778888 56788899999999999999884
No 56
>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]
Probab=96.47 E-value=0.26 Score=49.16 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=28.5
Q ss_pred HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHH
Q psy3431 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 297 (549)
Q Consensus 264 i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~ 297 (549)
+.+.+++.+ +.++..+.+|.-+-|+|||++|..
T Consensus 358 v~~ale~~l-g~~V~vP~~~ql~GAiGAAL~a~~ 390 (396)
T COG1924 358 VVRALEDLL-GRKVIVPPYAQLMGAIGAALIAKE 390 (396)
T ss_pred HHHHHHHHh-CCeeecCCccchhhHHHHHHHHhh
Confidence 677778888 678899999999999999999864
No 57
>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]
Probab=96.43 E-value=0.17 Score=53.43 Aligned_cols=57 Identities=21% Similarity=0.313 Sum_probs=41.0
Q ss_pred HHHHHHHHHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEe
Q psy3431 153 QATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSI 209 (549)
Q Consensus 153 ~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~ 209 (549)
..+..+-+..|+++--|=-|-+|=-.+.|..+..+.....+|+|+|||+|.+++..-
T Consensus 92 eFl~rv~~~~G~~ievIsGeeEArl~~lGv~~~~~~~~~~lv~DIGGGStEl~~g~~ 148 (492)
T COG0248 92 EFLARVEKELGLPIEVISGEEEARLIYLGVASTLPRKGDGLVIDIGGGSTELVLGDN 148 (492)
T ss_pred HHHHHHHHHhCCceEEeccHHHHHHHHHHHHhcCCCCCCEEEEEecCCeEEEEEecC
Confidence 457778888899874444455554444465555444788999999999999999973
No 58
>PRK10854 exopolyphosphatase; Provisional
Probab=96.03 E-value=0.11 Score=55.78 Aligned_cols=55 Identities=22% Similarity=0.385 Sum_probs=38.3
Q ss_pred HHHHHHHHcCCceeEeecchhHHHHhh-hcccCCCCCceEEEEEcCCCceeeeEEEe
Q psy3431 154 ATKDAGAIAGLNVMRIVNEPTAAALAY-GLDKNLKGERNVLIFDLGGGTFDVSILSI 209 (549)
Q Consensus 154 ~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~vlv~D~Gggt~dvsv~~~ 209 (549)
.+.++-+..|+++ .+|+..+=|.+.| |........+..+|+|+|||++.+++++-
T Consensus 101 fl~~i~~~tGl~i-~vIsG~EEA~l~~~gv~~~l~~~~~~lvvDIGGGStEl~~~~~ 156 (513)
T PRK10854 101 FLKRAEKVIPYPI-EIISGNEEARLIFMGVEHTQPEKGRKLVIDIGGGSTELVIGEN 156 (513)
T ss_pred HHHHHHHHHCCCe-EEeCHHHHHHHHHhhhhcccCCCCCeEEEEeCCCeEEEEEecC
Confidence 3445556679887 6676666565555 55444433457899999999999999863
No 59
>KOG0676|consensus
Probab=95.92 E-value=0.058 Score=54.45 Aligned_cols=110 Identities=19% Similarity=0.263 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEc
Q psy3431 118 SMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDL 197 (549)
Q Consensus 118 ~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~ 197 (549)
..+.+|+...-- .......-+++|=|..+....|+.+-+..-.. |++..+.-.- .|.+ |+..+ .+=+|+|+
T Consensus 82 e~iw~~if~~~L-~~~Pee~pvllte~pl~p~~nREk~tqi~FE~-fnvpa~yva~-qavl-ya~g~-----ttG~VvD~ 152 (372)
T KOG0676|consen 82 EKIWHHLFYSEL-LVAPEEHPVLLTEPPLNPKANREKLTQIMFET-FNVPALYVAI-QAVL-YASGR-----TTGLVVDS 152 (372)
T ss_pred HHHHHHHHHHhh-ccCcccCceEeecCCCCchHhHHHHHHHhhhh-cCccHhHHHH-HHHH-HHcCC-----eeEEEEEc
Confidence 555666652111 11123357899999999999999887765443 3443333222 3323 54432 35599999
Q ss_pred CCCceeee-EEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHH
Q psy3431 198 GGGTFDVS-ILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241 (549)
Q Consensus 198 Gggt~dvs-v~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~ 241 (549)
|.|-+++. +++ | +.+........+||+++.+-|...|.+
T Consensus 153 G~gvt~~vPI~e---G--~~lp~ai~~ldl~G~dlt~~l~~~L~~ 192 (372)
T KOG0676|consen 153 GDGVTHVVPIYE---G--YALPHAILRLDLAGRDLTDYLLKQLRK 192 (372)
T ss_pred CCCceeeeeccc---c--cccchhhheecccchhhHHHHHHHHHh
Confidence 99977544 443 2 333333445789999999866666655
No 60
>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional
Probab=95.65 E-value=0.26 Score=52.75 Aligned_cols=56 Identities=23% Similarity=0.413 Sum_probs=38.7
Q ss_pred HHHHHHHHHHcCCceeEeecchhHHHHhh-hcccCCCCCceEEEEEcCCCceeeeEEE
Q psy3431 152 RQATKDAGAIAGLNVMRIVNEPTAAALAY-GLDKNLKGERNVLIFDLGGGTFDVSILS 208 (549)
Q Consensus 152 r~~l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~vlv~D~Gggt~dvsv~~ 208 (549)
...+.++-+..|+++ .+|+-.+=|-+.| |.....+..+..+|+|+|||++.+++++
T Consensus 94 ~~fl~~i~~~tGl~i-evIsG~eEA~l~~~gv~~~l~~~~~~lviDIGGGStEl~~~~ 150 (496)
T PRK11031 94 DEFLAKAQEILGCPV-QVISGEEEARLIYQGVAHTTGGADQRLVVDIGGASTELVTGT 150 (496)
T ss_pred HHHHHHHHHHHCCCe-EEeCHHHHHHHHHHhhhhccCCCCCEEEEEecCCeeeEEEec
Confidence 344555666779987 6666665555554 5544443345689999999999999886
No 61
>PF08841 DDR: Diol dehydratase reactivase ATPase-like domain; InterPro: IPR009191 Diol dehydratase (propanediol dehydratase) and glycerol dehydratase undergo concomitant, irreversible inactivation by glycerol during catalysis [, ]. This inactivation is mechanism-based and involves cleavage of the Co-C bond of the cobalamin cofactor, coenzyme B12 (AdoCbl), forming 5 -deoxyadenosine and a modified coenzyme []. Irreversible inactivation of the enzyme results from tight binding to the modified, inactive cobalamin [, ]. The glycerol-inactivated enzyme undergoes rapid reactivation in the presence of free AdoCbl, ATP, and Mg 2+ (or Mn 2+ ) []. Reactivation is mediated by a complex of two proteins: a large subunit (DdrA/PduG) and a small subunit (DdrB/PduH, IPR009192 from INTERPRO) [, ]. The two subunits of the reactivating factor for glycerol dehydratase have been shown to form a tight complex that serves to reactivate the glycerol-inactivated holoenzyme, as well as O2-inactivated holoenzyme in vitro []. It is believed that this reactivating factor replaces an enzyme-bound, adenine-lacking inactive cobalamin with a free, adenine-containing active cobalamin []. PduG and PduH, part of the propanediol utilization pdu operon, are believed to have a similar function in the reactivation of propanediol dehydratase. PduG was also proposed, on the basis of genetic tests, to be a cobalamin adenosyltransferase involved in the conversion of inactive cobalamin (B12) to AdoCbl []. However, this function has since been shown to belong to another protein, PduO (IPR009221 from INTERPRO, IPR012228 from INTERPRO) []. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO for more details on the propanediol utilization pathway and pdu operon, as well as on the glycerol breakdown pathway.; PDB: 1NBW_C 2D0P_C 2D0O_C.
Probab=95.52 E-value=0.05 Score=51.76 Aligned_cols=50 Identities=28% Similarity=0.312 Sum_probs=35.8
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeC
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDE 211 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~ 211 (549)
+..|.++..-=-|+.+|.+....... .+..+.++|+||||+|.+++.-.+
T Consensus 106 ~~lgv~V~igGvEAemAi~GALTTPG--t~~PlaIlDmG~GSTDAsii~~~g 155 (332)
T PF08841_consen 106 EELGVPVEIGGVEAEMAILGALTTPG--TDKPLAILDMGGGSTDASIINRDG 155 (332)
T ss_dssp HHHTSEEEEECEHHHHHHHHHTTSTT----SSEEEEEE-SSEEEEEEE-TTS
T ss_pred HHHCCceEEccccHHHHHhcccCCCC--CCCCeEEEecCCCcccHHHhCCCC
Confidence 35577777777899999877655433 456789999999999999998544
No 62
>TIGR03706 exo_poly_only exopolyphosphatase. It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.
Probab=94.87 E-value=0.66 Score=46.21 Aligned_cols=76 Identities=22% Similarity=0.321 Sum_probs=46.9
Q ss_pred HHHHHHHH-HHcCCceeEeecchhHHHHhh-hcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcc
Q psy3431 152 RQATKDAG-AIAGLNVMRIVNEPTAAALAY-GLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGE 229 (549)
Q Consensus 152 r~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~ 229 (549)
+..+.+.. +..|++. ++|+..+=|.+.| +........ ..+++|+|||++.++.+. ++...... .-++|..
T Consensus 87 ~~~~~~~i~~~tgi~i-~visg~eEa~l~~~gv~~~~~~~-~~~v~DiGGGSte~~~~~--~~~~~~~~----Sl~lG~v 158 (300)
T TIGR03706 87 GPEFLREAEAILGLPI-EVISGEEEARLIYLGVAHTLPIA-DGLVVDIGGGSTELILGK--DFEPGEGV----SLPLGCV 158 (300)
T ss_pred HHHHHHHHHHHHCCCe-EEeChHHHHHHHHHHHHhCCCCC-CcEEEEecCCeEEEEEec--CCCEeEEE----EEccceE
Confidence 34444444 4579877 6888877777666 333332222 349999999999999875 23122111 2567777
Q ss_pred hHHHHH
Q psy3431 230 DFDNRL 235 (549)
Q Consensus 230 ~iD~~l 235 (549)
.+.+.+
T Consensus 159 rl~e~f 164 (300)
T TIGR03706 159 RLTEQF 164 (300)
T ss_pred EhHHhh
Confidence 776654
No 63
>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=94.09 E-value=1.6 Score=42.99 Aligned_cols=83 Identities=18% Similarity=0.210 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHcCCceeEeecchhHHHHhhhc--ccCCC--CCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCC
Q psy3431 151 QRQATKDAGAIAGLNVMRIVNEPTAAALAYGL--DKNLK--GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHL 226 (549)
Q Consensus 151 qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~--~~~~~--~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~l 226 (549)
.-....+|.+.|||....+==|.-|.--+|.. .+... ...+++|+|+|+..+.+.++.-... -...+..+
T Consensus 150 ~v~~ri~a~~~AGl~~~vlDV~~fAl~ra~~~~~~~~~~~~a~~~vav~~Igat~s~l~vi~~gk~------ly~r~~~~ 223 (354)
T COG4972 150 VVESRIDAFELAGLEPKVLDVESFALLRAYRLLASQFGPEEAAMKVAVFDIGATSSELLVIQDGKI------LYTREVPV 223 (354)
T ss_pred hhHHHHHHHHHcCCCceEEehHHHHHHHHHHHHHHHhCCchhhhhheeeeecccceEEEEEECCee------eeEeeccC
Confidence 34566789999999886665566666555541 11111 2334799999999999999873221 22334789
Q ss_pred CcchHHHHHHHHH
Q psy3431 227 GGEDFDNRLVSHL 239 (549)
Q Consensus 227 GG~~iD~~l~~~l 239 (549)
||+.+.+.+.+.+
T Consensus 224 g~~Qlt~~i~r~~ 236 (354)
T COG4972 224 GTDQLTQEIQRAY 236 (354)
T ss_pred cHHHHHHHHHHHh
Confidence 9999998887654
No 64
>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D. This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.
Probab=93.79 E-value=3.2 Score=40.06 Aligned_cols=32 Identities=19% Similarity=0.042 Sum_probs=23.1
Q ss_pred HHHHHHhhhCCCC----CCCCCChhhHHHccHHHHH
Q psy3431 264 VQSLLQNFFCGKS----LNLSINPDEAVAYGAAVQA 295 (549)
Q Consensus 264 i~~~l~~~f~~~~----~~~~~~~~eava~Gaa~~a 295 (549)
+.+.+++.+++.. +..+.+|..+-|+|||++|
T Consensus 227 ~~~~le~~l~~~~~~~~v~~~~~~q~~gAlGAAl~~ 262 (262)
T TIGR02261 227 LLEALKDAIQEAKMAVAAENHPDAIYAGAIGAALWG 262 (262)
T ss_pred HHHHHHHHhccCCcceEecCCCcchHHHHHHHHHcC
Confidence 6777777774333 4456688899999999864
No 65
>COG4819 EutA Ethanolamine utilization protein, possible chaperonin protecting lyase from inhibition [Amino acid transport and metabolism]
Probab=93.45 E-value=0.2 Score=48.76 Aligned_cols=37 Identities=38% Similarity=0.597 Sum_probs=26.9
Q ss_pred CceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchH
Q psy3431 189 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDF 231 (549)
Q Consensus 189 ~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~i 231 (549)
...++=+|+||||+..|++.. | ++..+.. ..+||+-+
T Consensus 144 ~t~v~NlDIGGGTtN~slFD~--G---kv~dTaC-LdiGGRLi 180 (473)
T COG4819 144 LTRVLNLDIGGGTTNYSLFDA--G---KVSDTAC-LDIGGRLI 180 (473)
T ss_pred ceEEEEEeccCCccceeeecc--c---cccccee-eecCcEEE
Confidence 466788999999999999863 4 3444444 66888765
No 66
>smart00842 FtsA Cell division protein FtsA. FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.
Probab=93.41 E-value=0.75 Score=42.27 Aligned_cols=30 Identities=40% Similarity=0.326 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCceeEeecchhHHHHh
Q psy3431 150 AQRQATKDAGAIAGLNVMRIVNEPTAAALA 179 (549)
Q Consensus 150 ~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~ 179 (549)
...+.+.++++.|||++..++.+|-|++.+
T Consensus 157 ~~v~n~~~~v~~agl~v~~i~~~~~A~~~a 186 (187)
T smart00842 157 SAIQNLEKCVERAGLEVDGIVLEPLASAEA 186 (187)
T ss_pred HHHHHHHHHHHHcCCchhhEEehhhhhEec
Confidence 467789999999999999999999998753
No 67
>COG4457 SrfB Uncharacterized protein conserved in bacteria, putative virulence factor [Function unknown]
Probab=92.19 E-value=1.2 Score=47.51 Aligned_cols=53 Identities=13% Similarity=0.308 Sum_probs=38.2
Q ss_pred eeCHHHHHHHHHHHHHHHHHHHhCC--------------CcceEEEEecCCCCHHHHHHHHHHHHHc
Q psy3431 110 TFAPEEISSMVLTKMKETAEAYLGH--------------SVRDAVITVPAYFNDAQRQATKDAGAIA 162 (549)
Q Consensus 110 ~~~~~~v~~~~L~~l~~~a~~~~~~--------------~~~~~vitVPa~f~~~qr~~l~~Aa~~A 162 (549)
.+|-.-++..+|..+...|-..++. ....+++|+|+...-.+|+.+++-+..|
T Consensus 423 ~ySRSslmTfML~EilaqAl~qiNsp~tR~kl~~~~aPR~LRsiILTlPsAmPk~EreIfr~r~~eA 489 (1014)
T COG4457 423 CYSRSSLMTFMLSEILAQALSQINSPATRLKLRHKDAPRQLRSIILTLPSAMPKQEREIFRQRMEEA 489 (1014)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhcCHHHhhhhccCCchHhhhhheeeCCccCCchHHHHHHHHHHHH
Confidence 3455667777777777666555442 2457899999999999988887776665
No 68
>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=92.18 E-value=1.1 Score=42.35 Aligned_cols=69 Identities=19% Similarity=0.230 Sum_probs=41.2
Q ss_pred HHHHHHHHHHhCCCcceEEEEecCCCCHH-HHHHHHHHHHHcCCceeEeecchhHHHHhhhcccC--CCCCceEEEEEcC
Q psy3431 122 TKMKETAEAYLGHSVRDAVITVPAYFNDA-QRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKN--LKGERNVLIFDLG 198 (549)
Q Consensus 122 ~~l~~~a~~~~~~~~~~~vitVPa~f~~~-qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~--~~~~~~vlv~D~G 198 (549)
.++++..+..++.++ .++++-..|... ..+..++. |||-+.+..+- -...+..+++|+|
T Consensus 77 e~Ii~~v~~Af~~pv--~~v~~~G~~~ssEa~~~~~~v----------------AAaNW~Ata~~~~e~~~dsci~VD~G 138 (330)
T COG1548 77 EDIIDTVEKAFNCPV--YVVDVNGNFLSSEALKNPREV----------------AAANWVATARFLAEEIKDSCILVDMG 138 (330)
T ss_pred HHHHHHHHHhcCCce--EEEeccCcCcChhHhcCHHHH----------------HHhhhHHHHHHHHHhcCCceEEEecC
Confidence 456666777776665 688888888764 22212221 22221111110 0146779999999
Q ss_pred CCceeeeEEE
Q psy3431 199 GGTFDVSILS 208 (549)
Q Consensus 199 ggt~dvsv~~ 208 (549)
..|+|+.-+.
T Consensus 139 STTtDIIPi~ 148 (330)
T COG1548 139 STTTDIIPIK 148 (330)
T ss_pred CcccceEeec
Confidence 9999987665
No 69
>PF02541 Ppx-GppA: Ppx/GppA phosphatase family; InterPro: IPR003695 Exopolyphosphate phosphatase (Ppx) 3.6.1.11 from EC and guanosine pentaphosphate phosphatase (GppA) 3.6.1.40 from EC belong to the sugar kinase/actin/hsp70 superfamily [].; PDB: 3MDQ_A 1U6Z_A 1T6D_B 2J4R_B 1T6C_A 2FLO_B 3CER_B 3HI0_A.
Probab=91.91 E-value=0.47 Score=46.84 Aligned_cols=109 Identities=21% Similarity=0.403 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHhCCCcceE-EEEecCCCCHHHHHH-HHHHHHHcCCceeEeecchhHHHHhh-hcccCCCCCceEE
Q psy3431 117 SSMVLTKMKETAEAYLGHSVRDA-VITVPAYFNDAQRQA-TKDAGAIAGLNVMRIVNEPTAAALAY-GLDKNLKGERNVL 193 (549)
Q Consensus 117 ~~~~L~~l~~~a~~~~~~~~~~~-vitVPa~f~~~qr~~-l~~Aa~~AGl~~~~li~Ep~Aaal~y-~~~~~~~~~~~vl 193 (549)
+...|+..++.+..+ .+.++ +++.-|.=....+.. +...-+..|+++ .+|+..+=|.+.| +...........+
T Consensus 40 ~~~~L~~f~~~~~~~---~v~~i~~vATsA~R~A~N~~~~~~~i~~~tGi~i-~iIsgeeEa~l~~~gv~~~l~~~~~~l 115 (285)
T PF02541_consen 40 AIDALKRFKEILKDY---GVEKIRAVATSALREAKNSDEFLDRIKKETGIDI-EIISGEEEARLSFLGVLSSLPPDKNGL 115 (285)
T ss_dssp HHHHHHHHHHHHHHT---TGSEEEEEEEHHHHHSTTHHHHHHHHHHHHSS-E-EEE-HHHHHHHHHHHHHHHSTTTSSEE
T ss_pred HHHHHHHHHHHHHHC---CCCEEEEEhhHHHHhCcCHHHHHHHHHHHhCCce-EEecHHHHHHHHHHHHHhhccccCCEE
Confidence 344555555555543 33333 233222111112223 444445669887 5666665555544 3332223467789
Q ss_pred EEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHH
Q psy3431 194 IFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRL 235 (549)
Q Consensus 194 v~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l 235 (549)
++|+|||++.+++++- +......+ -++|.-.+.+.+
T Consensus 116 viDIGGGStEl~~~~~--~~~~~~~S----l~lG~vrl~e~~ 151 (285)
T PF02541_consen 116 VIDIGGGSTELILFEN--GKVVFSQS----LPLGAVRLTERF 151 (285)
T ss_dssp EEEEESSEEEEEEEET--TEEEEEEE----ES--HHHHHHHH
T ss_pred EEEECCCceEEEEEEC--CeeeEeee----eehHHHHHHHHH
Confidence 9999999999998863 31222222 457766665443
No 70
>KOG0681|consensus
Probab=89.86 E-value=3.4 Score=43.31 Aligned_cols=99 Identities=11% Similarity=0.069 Sum_probs=56.3
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHH-HcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEE
Q psy3431 137 RDAVITVPAYFNDAQRQATKDAGA-IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALF 215 (549)
Q Consensus 137 ~~~vitVPa~f~~~qr~~l~~Aa~-~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~ 215 (549)
.-+++|=+..=...+|+.|.+..- ..|++.+.+=-+.- ++|-++........-|++++|..+|.|-.+-- | ..
T Consensus 117 hPIilTE~laNP~~~R~~m~elLFE~YgvP~V~yGIDsl---fS~~hN~~~~~~~~~liis~g~~~T~vipvld--G-~~ 190 (645)
T KOG0681|consen 117 HPIILTEALANPVYSRSEMVELLFETYGVPKVAYGIDSL---FSFYHNYGKSSNKSGLIISMGHSATHVIPVLD--G-RL 190 (645)
T ss_pred CCeeeehhccChHHHHHHHHHHHHHHcCCcceeechhhH---HHHhhccCcccCcceEEEecCCCcceeEEEec--C-ch
Confidence 346777777666677888776554 44776543211111 11111111123447899999999988876642 3 22
Q ss_pred EEEEecCCCCCCcchHHHHHHHHHHHH
Q psy3431 216 EVRSTAGDTHLGGEDFDNRLVSHLAEE 242 (549)
Q Consensus 216 ~v~~~~~d~~lGG~~iD~~l~~~l~~~ 242 (549)
.. ....-.++||...-.-|.+.+.-+
T Consensus 191 il-~~~kRiN~GG~qa~dYL~~Lmq~K 216 (645)
T KOG0681|consen 191 IL-KDVKRINWGGYQAGDYLSRLMQLK 216 (645)
T ss_pred hh-hcceeeccCcchHHHHHHHHHhcc
Confidence 22 222337899998766555555544
No 71
>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination. The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.
Probab=87.43 E-value=0.57 Score=40.49 Aligned_cols=22 Identities=32% Similarity=0.371 Sum_probs=19.1
Q ss_pred CCEEEEEcCccceEEEEEECCe
Q psy3431 1 MPAIGIDLGTTYSCVAVFQQGK 22 (549)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~g~ 22 (549)
|.++|||+|+..+.+|+..+..
T Consensus 1 mriL~lD~G~kriGiAvsd~~~ 22 (135)
T PF03652_consen 1 MRILGLDYGTKRIGIAVSDPLG 22 (135)
T ss_dssp -EEEEEEECSSEEEEEEEETTT
T ss_pred CeEEEEEeCCCeEEEEEecCCC
Confidence 8899999999999999987754
No 72
>PRK09557 fructokinase; Reviewed
Probab=87.07 E-value=5 Score=39.84 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=25.7
Q ss_pred cCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCC
Q psy3431 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGG 200 (549)
Q Consensus 162 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Ggg 200 (549)
.|++ +.+.|+..|+|++-.........++++++.+|.|
T Consensus 96 ~~~p-v~~~NDa~aaA~aE~~~g~~~~~~~~~~l~igtG 133 (301)
T PRK09557 96 LNRE-VRLANDANCLAVSEAVDGAAAGKQTVFAVIIGTG 133 (301)
T ss_pred HCCC-EEEccchhHHHHHHHHhcccCCCCcEEEEEEccc
Confidence 3775 5799999999987644322234567777778744
No 73
>PF01968 Hydantoinase_A: Hydantoinase/oxoprolinase; InterPro: IPR002821 This family includes the enzymes hydantoinase and oxoprolinase (3.5.2.9 from EC). Both reactions involve the hydrolysis of 5-membered rings via hydrolysis of their internal imide bonds [].; GO: 0016787 hydrolase activity; PDB: 3C0B_C 3CET_B.
Probab=86.61 E-value=0.43 Score=47.22 Aligned_cols=42 Identities=29% Similarity=0.567 Sum_probs=25.8
Q ss_pred ceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEE
Q psy3431 165 NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILS 208 (549)
Q Consensus 165 ~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~ 208 (549)
++..+.+-|.|.+..... .....++++++|+||.|||++++.
T Consensus 54 Pv~ti~SGPaas~~ga~~--~~~g~~~~i~vDmGGTTtDi~~i~ 95 (290)
T PF01968_consen 54 PVETILSGPAASVIGAAA--RLTGLENAIVVDMGGTTTDIALIK 95 (290)
T ss_dssp GGCTB--SSHHHHHHHHH----HT-SSEEEEEE-SS-EEEEEEE
T ss_pred HHHHhhcCHHHhHhhhhh--hcCCCCCEEEEeCCCCEEEEEEEE
Confidence 445566777776654444 222456899999999999999986
No 74
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=86.55 E-value=0.63 Score=37.55 Aligned_cols=19 Identities=32% Similarity=0.375 Sum_probs=17.4
Q ss_pred CCEEEEEcCccceEEEEEE
Q psy3431 1 MPAIGIDLGTTYSCVAVFQ 19 (549)
Q Consensus 1 m~vvGID~Gtt~s~va~~~ 19 (549)
|.++|||+|.|++.+|+..
T Consensus 1 ~~ilgiD~Ggt~i~~a~~d 19 (99)
T smart00732 1 KRVLGLDPGRKGIGVAVVD 19 (99)
T ss_pred CcEEEEccCCCeEEEEEEC
Confidence 7799999999999999874
No 75
>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.57 E-value=1.4 Score=48.57 Aligned_cols=42 Identities=31% Similarity=0.564 Sum_probs=28.6
Q ss_pred eeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEE
Q psy3431 166 VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILS 208 (549)
Q Consensus 166 ~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~ 208 (549)
+..+.+=|.|-.+..........+ +++++||||.|+|++++.
T Consensus 255 v~tI~SGPAagvvGAa~ltg~~~g-~~i~~DmGGTStDva~i~ 296 (674)
T COG0145 255 VETILSGPAAGVVGAAYLTGLKAG-NAIVFDMGGTSTDVALII 296 (674)
T ss_pred eeeEeeccHHHHHHHHHhcccccC-CEEEEEcCCcceeeeeee
Confidence 345666777665554433121223 699999999999999987
No 76
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=81.07 E-value=2.3 Score=35.82 Aligned_cols=52 Identities=13% Similarity=0.263 Sum_probs=31.0
Q ss_pred EEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCC--cchHH--HHHHHHHHHHH
Q psy3431 192 VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLG--GEDFD--NRLVSHLAEEF 243 (549)
Q Consensus 192 vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lG--G~~iD--~~l~~~l~~~~ 243 (549)
++++|+|++++.+.+++......++++..+.-+.-| |..|. +.+..-|..-+
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~~~~~vl~~g~~~s~gi~~g~Itd~~~i~~~i~~a~ 56 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSDGYIRVLGVGEVPSKGIKGGHITDIEDISKAIKIAI 56 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEEEEEEEES----------HHHHH--HHHHHHHT--H
T ss_pred CEEEEcCCCcEEEEEEEeCCCCcEEEEEEecccccccCCCEEEEHHHHHHHHHHHH
Confidence 578999999999999998443366666543222222 77777 77776666555
No 77
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=80.21 E-value=13 Score=38.11 Aligned_cols=18 Identities=33% Similarity=0.429 Sum_probs=15.9
Q ss_pred CEEEEEcCccceEEEEEE
Q psy3431 2 PAIGIDLGTTYSCVAVFQ 19 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~ 19 (549)
.++.||||.||.++++..
T Consensus 76 ~~LaiD~GGTnlRvc~V~ 93 (466)
T COG5026 76 SVLAIDLGGTNLRVCLVV 93 (466)
T ss_pred CEEEEecCCceEEEEEEE
Confidence 589999999999999764
No 78
>PRK00109 Holliday junction resolvase-like protein; Reviewed
Probab=78.82 E-value=2 Score=37.27 Aligned_cols=21 Identities=33% Similarity=0.316 Sum_probs=18.6
Q ss_pred CCEEEEEcCccceEEEEEECC
Q psy3431 1 MPAIGIDLGTTYSCVAVFQQG 21 (549)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~g 21 (549)
|.++|||+|+..+.+|+..+.
T Consensus 4 ~~iLalD~G~kriGvAv~d~~ 24 (138)
T PRK00109 4 GRILGLDVGTKRIGVAVSDPL 24 (138)
T ss_pred CcEEEEEeCCCEEEEEEecCC
Confidence 679999999999999988653
No 79
>PRK05082 N-acetylmannosamine kinase; Provisional
Probab=78.70 E-value=22 Score=34.98 Aligned_cols=38 Identities=24% Similarity=0.212 Sum_probs=25.7
Q ss_pred cCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCc
Q psy3431 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGT 201 (549)
Q Consensus 162 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt 201 (549)
.|++ +.+.|+..|+|++-.... .....+++++-+|.|-
T Consensus 96 ~~~p-v~v~NDa~a~a~aE~~~g-~~~~~~~~~l~ig~Gi 133 (291)
T PRK05082 96 TDLP-TIALNDAQAAAWAEYQAL-PDDIRNMVFITVSTGV 133 (291)
T ss_pred hCCC-EEEECcHHHHHHHHHHhc-CCCCCCEEEEEECCCc
Confidence 4775 579999999998754322 2344678888888543
No 80
>KOG1385|consensus
Probab=78.21 E-value=7.5 Score=39.56 Aligned_cols=77 Identities=22% Similarity=0.324 Sum_probs=44.9
Q ss_pred eeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCceeEeecchhHH--HHhhhcccCC
Q psy3431 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA--ALAYGLDKNL 186 (549)
Q Consensus 109 ~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aa--al~y~~~~~~ 186 (549)
..+.|.+-+..+|+.+++..+....-.+..-.|+|=. =-+|..-| .+.|.+..-.
T Consensus 152 LRlL~~~ka~~IL~aVre~l~~~s~f~v~~d~VsIm~-----------------------GtdEGv~aWiTiN~Llg~L~ 208 (453)
T KOG1385|consen 152 LRLLPGSKADNILQAVRELLKNDSPFPVVEDAVSIMD-----------------------GTDEGVYAWITINYLLGTLG 208 (453)
T ss_pred cccCChhHHHHHHHHHHHHHhccCCccccCCceeecc-----------------------CcccceeeeeehhhhhcccC
Confidence 5677888899999999988874322122211122211 01122211 2345443322
Q ss_pred C-CCceEEEEEcCCCceeeeEEE
Q psy3431 187 K-GERNVLIFDLGGGTFDVSILS 208 (549)
Q Consensus 187 ~-~~~~vlv~D~Gggt~dvsv~~ 208 (549)
. ...++.|+|+|||+|.++..-
T Consensus 209 ~~~~~tvgv~DLGGGSTQi~f~p 231 (453)
T KOG1385|consen 209 APGHRTVGVVDLGGGSTQITFLP 231 (453)
T ss_pred CCCCCceEEEEcCCceEEEEEec
Confidence 2 267899999999999998775
No 81
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=77.54 E-value=27 Score=34.83 Aligned_cols=39 Identities=33% Similarity=0.388 Sum_probs=26.0
Q ss_pred cCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCc
Q psy3431 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGT 201 (549)
Q Consensus 162 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt 201 (549)
.|++ +.+-|+..|+|++-.+.........++++-+|-|-
T Consensus 106 ~~~P-v~veNDan~aalaE~~~g~~~~~~~~~~i~~gtGI 144 (314)
T COG1940 106 LGLP-VFVENDANAAALAEAWFGAGRGIDDVVYITLGTGI 144 (314)
T ss_pred HCCC-EEEecHHHHHHHHHHHhCCCCCCCCEEEEEEccce
Confidence 3444 58999999999987665432345567777666553
No 82
>PF08735 DUF1786: Putative pyruvate format-lyase activating enzyme (DUF1786); InterPro: IPR014846 This family is annotated as pyruvate formate-lyase activating enzyme (1.97.1.4 from EC) in UniProt. It is not clear where this annotation comes from.
Probab=77.51 E-value=30 Score=33.15 Aligned_cols=73 Identities=19% Similarity=0.346 Sum_probs=48.6
Q ss_pred CCCcceEEE--EecCCCCHHHHHHHHHHHHHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEE
Q psy3431 133 GHSVRDAVI--TVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILS 208 (549)
Q Consensus 133 ~~~~~~~vi--tVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~ 208 (549)
+..+..++. .+|.+|+. -+++++.+..+|.+. .+++--.||.+....+........++++|+|-|+|=+.++.
T Consensus 111 g~~~~~~~y~~~~P~~~TR--m~av~~~~~~~~~~~-~vmDTg~AAvlGal~d~~v~~~~~~~~vniGN~HTlaa~v~ 185 (254)
T PF08735_consen 111 GGRPESFVYADDPPPYFTR--MRAVRESLGGAGYDE-VVMDTGPAAVLGALCDPEVSSREGIIVVNIGNGHTLAALVK 185 (254)
T ss_pred CCCHHHeeecCCCcHHHHH--HHHHHHHhccCCCCc-eEecCHHHHHhhhhcChhhhccCCeEEEEeCCccEEEEEEe
Confidence 456677777 89999663 346666666666666 44454444444444333333467899999999999988883
No 83
>cd06007 R3H_DEXH_helicase R3H domain of a group of proteins which also contain a DEXH-box helicase domain, and may function as ATP-dependent DNA or RNA helicases. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=77.40 E-value=8.2 Score=27.94 Aligned_cols=29 Identities=14% Similarity=0.227 Sum_probs=27.1
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCce
Q psy3431 138 DAVITVPAYFNDAQRQATKDAGAIAGLNV 166 (549)
Q Consensus 138 ~~vitVPa~f~~~qr~~l~~Aa~~AGl~~ 166 (549)
...++.|+.++..+|..+.+.|+..||..
T Consensus 16 ~~~l~Fpp~ls~~eR~~vH~~a~~~gL~s 44 (59)
T cd06007 16 NEEYEFPSSLTNHERAVIHRLCRKLGLKS 44 (59)
T ss_pred ccEEEcCCCCCHHHHHHHHHHHHHcCCCc
Confidence 67899999999999999999999999875
No 84
>PRK13310 N-acetyl-D-glucosamine kinase; Provisional
Probab=76.98 E-value=29 Score=34.37 Aligned_cols=40 Identities=25% Similarity=0.301 Sum_probs=27.0
Q ss_pred HcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCc
Q psy3431 161 IAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGT 201 (549)
Q Consensus 161 ~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt 201 (549)
..|++ +.+-|+..|+|++-.........+.++++-+|.|-
T Consensus 95 ~~~~p-V~ieNDa~aaalaE~~~g~~~~~~~~~~l~~gtGi 134 (303)
T PRK13310 95 RLGRD-VRLDNDANCFALSEAWDDEFTQYPLVMGLILGTGV 134 (303)
T ss_pred HHCCC-eEEeccHhHHHHHHhhhccccCCCcEEEEEecCce
Confidence 34775 57999999999875443222345678888888653
No 85
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=76.90 E-value=27 Score=35.78 Aligned_cols=32 Identities=19% Similarity=0.119 Sum_probs=24.7
Q ss_pred HHHHHHhhhC----CCCCCCCCChhhHHHccHHHHH
Q psy3431 264 VQSLLQNFFC----GKSLNLSINPDEAVAYGAAVQA 295 (549)
Q Consensus 264 i~~~l~~~f~----~~~~~~~~~~~eava~Gaa~~a 295 (549)
+.+.|++.++ +.++..+.+|..+-|+|||++|
T Consensus 397 vv~aLe~~L~~~~~~~~V~Vp~~pq~~GALGAAL~a 432 (432)
T TIGR02259 397 AVKELRKLIKENYGEVQINIDPDSIYTGALGASEFA 432 (432)
T ss_pred HHHHHHHHHccccCCCeEecCCCccHHHHHHHHHhC
Confidence 5666666663 4567778999999999999875
No 86
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=76.86 E-value=6.7 Score=36.58 Aligned_cols=54 Identities=19% Similarity=0.396 Sum_probs=35.2
Q ss_pred CCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCC---CCcchHHHHHHHHHHHHH
Q psy3431 188 GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTH---LGGEDFDNRLVSHLAEEF 243 (549)
Q Consensus 188 ~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~---lGG~~iD~~l~~~l~~~~ 243 (549)
+...+|++|+||.++-++++++.+...+++....+... .-|.. ..|++|+++.+
T Consensus 61 E~G~~LalDlGGTnlRv~~V~L~g~~~~~~~~~~~~ip~~~~~~~~--~~lFd~ia~~i 117 (206)
T PF00349_consen 61 EKGDFLALDLGGTNLRVALVELSGNGKVEIEQEKYKIPEELMNGSG--EELFDFIADCI 117 (206)
T ss_dssp TEEEEEEEEESSSSEEEEEEEEESSSEEEEEEEEEE--HHHHTSBH--HHHHHHHHHHH
T ss_pred CCceEEEEeecCcEEEEEEEEEcCCCCceeeeccccCChHHhcCCc--ccHHHHHHHHH
Confidence 56789999999999999999998775555433222111 11111 56677777654
No 87
>COG0816 Predicted endonuclease involved in recombination (possible Holliday junction resolvase in Mycoplasmas and B. subtilis) [DNA replication, recombination, and repair]
Probab=76.76 E-value=2.4 Score=36.74 Aligned_cols=22 Identities=32% Similarity=0.285 Sum_probs=19.0
Q ss_pred CCEEEEEcCccceEEEEEECCe
Q psy3431 1 MPAIGIDLGTTYSCVAVFQQGK 22 (549)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~g~ 22 (549)
|.++|+||||-.+.||+.....
T Consensus 2 ~~ilalD~G~KrIGvA~sd~~~ 23 (141)
T COG0816 2 MRILALDVGTKRIGVAVSDILG 23 (141)
T ss_pred ceEEEEecCCceEEEEEecCCC
Confidence 6899999999999999876543
No 88
>PRK09343 prefoldin subunit beta; Provisional
Probab=75.35 E-value=34 Score=28.83 Aligned_cols=50 Identities=14% Similarity=0.226 Sum_probs=38.0
Q ss_pred cChhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3431 478 LTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAG 531 (549)
Q Consensus 478 ~~~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~ 531 (549)
+-..+++.+...+++-.+.++. ..+.++.+...|+..+......+.+...
T Consensus 64 lv~qd~~e~~~~l~~r~E~ie~----~ik~lekq~~~l~~~l~e~q~~l~~ll~ 113 (121)
T PRK09343 64 LVKVDKTKVEKELKERKELLEL----RSRTLEKQEKKLREKLKELQAKINEMLS 113 (121)
T ss_pred HhhccHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455777777778877777774 6677888888888888888888887754
No 89
>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....
Probab=71.76 E-value=3.7 Score=39.39 Aligned_cols=18 Identities=39% Similarity=0.671 Sum_probs=16.2
Q ss_pred EEEEEcCccceEEEEEEC
Q psy3431 3 AIGIDLGTTYSCVAVFQQ 20 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~ 20 (549)
++|||+|||+++++++..
T Consensus 2 ~lgiDiGTts~K~~l~d~ 19 (245)
T PF00370_consen 2 YLGIDIGTTSVKAVLFDE 19 (245)
T ss_dssp EEEEEECSSEEEEEEEET
T ss_pred EEEEEEcccceEEEEEeC
Confidence 699999999999998863
No 90
>cd02640 R3H_NRF R3H domain of the NF-kappaB-repression factor (NRF). NRF is a nuclear inhibitor of NF-kappaB proteins that can silence the IFNbeta promoter via binding to a negative regulatory element (NRE). Beside R3H NRF also contains a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=71.60 E-value=16 Score=26.59 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=31.5
Q ss_pred HHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCce
Q psy3431 126 ETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 166 (549)
Q Consensus 126 ~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~~AGl~~ 166 (549)
+....+.... ....++.|+.++..+|..+.+.|+..||..
T Consensus 6 ~~i~~F~~s~-~~~~l~f~p~lt~~eR~~vH~~a~~~gL~s 45 (60)
T cd02640 6 QIIQNYAHSD-DIRDMVFSPEFSKEERALIHQIAQKYGLKS 45 (60)
T ss_pred HHHHHHHcCC-ccceEEcCCCCCHHHHHHHHHHHHHcCCce
Confidence 3344444322 467899999999999999999999999976
No 91
>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T.
Probab=71.58 E-value=7.2 Score=32.80 Aligned_cols=21 Identities=29% Similarity=0.472 Sum_probs=17.8
Q ss_pred EEEEEcCccceEEEEEECCeE
Q psy3431 3 AIGIDLGTTYSCVAVFQQGKV 23 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g~~ 23 (549)
|++||+|++.+++++++.+..
T Consensus 1 i~~iDiGs~~~~~~i~~~~~~ 21 (120)
T PF14450_consen 1 IVVIDIGSSKTKVAIAEDGSD 21 (120)
T ss_dssp EEEEEE-SSSEEEEEEETTEE
T ss_pred CEEEEcCCCcEEEEEEEeCCC
Confidence 689999999999999988764
No 92
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=71.43 E-value=9.5 Score=42.40 Aligned_cols=20 Identities=35% Similarity=0.489 Sum_probs=17.2
Q ss_pred HHcCCceeEeecchhHHHHh
Q psy3431 160 AIAGLNVMRIVNEPTAAALA 179 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~ 179 (549)
+..|++++.++|+-.|+|++
T Consensus 103 ~~~g~~~v~l~ND~~aaA~g 122 (638)
T PRK14101 103 RALGFDTLLVVNDFTALAMA 122 (638)
T ss_pred HHcCCCeEEEEchHHHHHcC
Confidence 34588888999999999987
No 93
>KOG1369|consensus
Probab=69.46 E-value=14 Score=38.69 Aligned_cols=64 Identities=14% Similarity=0.160 Sum_probs=46.0
Q ss_pred cCCCCHHHHHHHHHHHHHcCCc---eeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeC
Q psy3431 144 PAYFNDAQRQATKDAGAIAGLN---VMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDE 211 (549)
Q Consensus 144 Pa~f~~~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~ 211 (549)
+.-....--+.+.+|.+.-|+. +..++|+.++.-++..+.. ++.++-+=+|.||--+.+.+..+
T Consensus 186 ~~~~g~Dvv~~L~eal~rr~~~~i~V~AlvNDTvGtl~~~~y~~----~~~~igvI~GTGtNacY~e~~~~ 252 (474)
T KOG1369|consen 186 TDCEGEDVVRLLREAIKRRGLFDMDVVAVVNDTVGTLMTCAYED----PNCEIGVIFGTGTNACYMEDMRN 252 (474)
T ss_pred hhhhcchHHHHHHHHHHHcCCcceEEEEEEecCHHhHhhceecC----CCcEEEEEECCCccceeeeeccc
Confidence 3333444456778888888775 6889999999887766553 36677777899998887777654
No 94
>PRK09698 D-allose kinase; Provisional
Probab=69.06 E-value=57 Score=32.23 Aligned_cols=43 Identities=16% Similarity=0.080 Sum_probs=27.5
Q ss_pred cCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEE
Q psy3431 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL 207 (549)
Q Consensus 162 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~ 207 (549)
.|++ +.+.|+..|+|++-..... ....+++++.+|.| .-.+++
T Consensus 104 ~~~p-v~v~NDa~aaa~~E~~~~~-~~~~~~~~v~lgtG-IG~giv 146 (302)
T PRK09698 104 LNCP-VFFSRDVNLQLLWDVKENN-LTQQLVLGAYLGTG-MGFAVW 146 (302)
T ss_pred hCCC-EEEcchHhHHHHHHHHhcC-CCCceEEEEEecCc-eEEEEE
Confidence 4765 5899999999876543222 23457888888865 333443
No 95
>PLN02362 hexokinase
Probab=68.77 E-value=8 Score=41.30 Aligned_cols=52 Identities=19% Similarity=0.159 Sum_probs=30.3
Q ss_pred HHHHHHHHHHcCC--ceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEE
Q psy3431 152 RQATKDAGAIAGL--NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL 207 (549)
Q Consensus 152 r~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~ 207 (549)
.+.+.+|...-|+ ++..|||+.+|.-++.++..+ ...+-+=+|-||--+.+-
T Consensus 208 v~lL~~Al~r~~l~v~v~AlvNDTVgTL~a~aY~~~----~~~iG~IlGTGtNacY~E 261 (509)
T PLN02362 208 AECLQGALNRRGLDMRVAALVNDTVGTLALGHYHDP----DTVAAVIIGTGTNACYLE 261 (509)
T ss_pred HHHHHHHHHHcCCCcEEEEEEEcCHHHHHhhhcCCC----CceEEEEEECCccceEee
Confidence 3444445444454 678899999998776554422 344444466666554443
No 96
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=68.10 E-value=3.9 Score=36.59 Aligned_cols=19 Identities=32% Similarity=0.469 Sum_probs=17.2
Q ss_pred CCEEEEEcCccceEEEEEE
Q psy3431 1 MPAIGIDLGTTYSCVAVFQ 19 (549)
Q Consensus 1 m~vvGID~Gtt~s~va~~~ 19 (549)
|.|+|||-|++++..|+..
T Consensus 2 m~iLGIDPgl~~tG~avi~ 20 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIE 20 (164)
T ss_pred CEEEEEccccCceeEEEEE
Confidence 7799999999999999864
No 97
>PLN02596 hexokinase-like
Probab=67.90 E-value=56 Score=34.81 Aligned_cols=54 Identities=19% Similarity=0.168 Sum_probs=34.0
Q ss_pred HHHHHHHHHcCC--ceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEee
Q psy3431 153 QATKDAGAIAGL--NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID 210 (549)
Q Consensus 153 ~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~ 210 (549)
+.+.+|.+.-|+ +++.|+|+.++..++.++..+ ...+-+=+|-||--+.+-++.
T Consensus 209 ~lL~~Al~r~~l~v~v~AivNDTVgTL~a~aY~~~----~~~iG~I~GTGtNacY~E~~~ 264 (490)
T PLN02596 209 NDINRALEKHGLKIRVFALVDDTIGNLAGGRYYNK----DTVAAVTLGMGTNAAYVEPAQ 264 (490)
T ss_pred HHHHHHHHhcCCCceEEEEEEcCHHHHHhhhcCCC----CeEEEEEEecccceEEEEEcc
Confidence 344455544454 678999999998877766532 344434478887666665543
No 98
>PRK13311 N-acetyl-D-glucosamine kinase; Provisional
Probab=67.44 E-value=53 Score=31.62 Aligned_cols=38 Identities=29% Similarity=0.327 Sum_probs=26.2
Q ss_pred cCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCC
Q psy3431 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGG 200 (549)
Q Consensus 162 AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Ggg 200 (549)
.+++ +.+-|+-.|+|++..........++++++-+|.|
T Consensus 96 ~~~p-V~leNDanaaAlaE~~~g~~~~~~~~v~i~lgtG 133 (256)
T PRK13311 96 IQRE-VRIDNDANCFALSEAWDPEFRTYPTVLGLILGTG 133 (256)
T ss_pred HCCC-EEEEchhhHHHHHHHHhcCCCCCCcEEEEEECcC
Confidence 3665 5799999999988755433234567788777754
No 99
>KOG0680|consensus
Probab=66.07 E-value=1.3e+02 Score=29.96 Aligned_cols=100 Identities=14% Similarity=0.170 Sum_probs=56.8
Q ss_pred cceEEEEecCCC-CHHHHHHHHHHHHHcCCceeEeecchhHHHHhhh---cccCC---CCCceEEEEEcCCCceeeeEEE
Q psy3431 136 VRDAVITVPAYF-NDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG---LDKNL---KGERNVLIFDLGGGTFDVSILS 208 (549)
Q Consensus 136 ~~~~vitVPa~f-~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~---~~~~~---~~~~~vlv~D~Gggt~dvsv~~ 208 (549)
...+++|=|.+- ..-|.....-..+..+++. +..-+.|+..++- .++.. ......+|+|-|.+-|-+.-+-
T Consensus 93 ~~~ivlTep~~~~psi~~~t~eilFEey~fd~--v~kttaa~lva~~~~~~~ne~~tt~~~~c~lVIDsGysfThIip~v 170 (400)
T KOG0680|consen 93 DHNIVLTEPCMTFPSIQEHTDEILFEEYQFDA--VLKTTAAVLVAFTKYVRNNEDSTTTSSECCLVIDSGYSFTHIIPVV 170 (400)
T ss_pred cceEEEecccccccchhhhHHHHHHHHhccce--EeecCHHHhcchhhhccCCccccccccceEEEEeCCCceEEEehhh
Confidence 446788888653 4444444444455666664 3444444444333 22111 1356899999999887765443
Q ss_pred eeCCcEEEEEEecCCCCCCcchHHHHHHHHHHH
Q psy3431 209 IDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241 (549)
Q Consensus 209 ~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~ 241 (549)
. | .....+... ..+||..++..|.+++-=
T Consensus 171 ~--g-~~~~qaV~R-iDvGGK~LTn~LKE~iSy 199 (400)
T KOG0680|consen 171 K--G-IPYYQAVKR-IDVGGKALTNLLKETISY 199 (400)
T ss_pred c--C-cchhhceEE-eecchHHHHHHHHHHhhh
Confidence 2 2 111112222 679999999998887753
No 100
>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein. This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.
Probab=66.05 E-value=4.2 Score=40.52 Aligned_cols=19 Identities=26% Similarity=0.408 Sum_probs=17.3
Q ss_pred ceEEEEEcCCCceeeeEEE
Q psy3431 190 RNVLIFDLGGGTFDVSILS 208 (549)
Q Consensus 190 ~~vlv~D~Gggt~dvsv~~ 208 (549)
.+++++||||.|+|++++.
T Consensus 128 ~~~I~~DmGGTTtDi~~i~ 146 (318)
T TIGR03123 128 PECLFVDMGSTTTDIIPII 146 (318)
T ss_pred CCEEEEEcCccceeeEEec
Confidence 4599999999999999986
No 101
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=65.44 E-value=27 Score=33.43 Aligned_cols=89 Identities=18% Similarity=0.302 Sum_probs=52.0
Q ss_pred ecCCCCHHHHHHHHHHHHHc---CCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCcEEEEEE
Q psy3431 143 VPAYFNDAQRQATKDAGAIA---GLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRS 219 (549)
Q Consensus 143 VPa~f~~~qr~~l~~Aa~~A---Gl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~ 219 (549)
+|.+|+ .|+.|+..| +-. ..+++.--||+....++. .....||+|+|-|++..+++. .+ .+.-+-
T Consensus 186 iPe~Ft-----RMraaa~sal~~~t~-av~mDskfaav~gal~dp---aa~palvVd~GngHttaalvd--ed-RI~gv~ 253 (342)
T COG4012 186 IPESFT-----RMRAAAMSALSAGTD-AVAMDSKFAAVMGALVDP---AADPALVVDYGNGHTTAALVD--ED-RIVGVY 253 (342)
T ss_pred CchhHH-----HHHHHHHHHHhcCce-EEEEcchhHhhhhcccCc---ccCceEEEEccCCceEEEEec--CC-eEEEEe
Confidence 566665 455544443 322 345566666665555542 345899999999999998885 23 333233
Q ss_pred ecCCCCCCcchHHHHHHHHHHHHH
Q psy3431 220 TAGDTHLGGEDFDNRLVSHLAEEF 243 (549)
Q Consensus 220 ~~~d~~lGG~~iD~~l~~~l~~~~ 243 (549)
......+.-..|...|.++...++
T Consensus 254 EHHT~~Lspekled~I~rf~~GeL 277 (342)
T COG4012 254 EHHTIRLSPEKLEDQIIRFVEGEL 277 (342)
T ss_pred ecccccCCHHHHHHHHHHHHhccc
Confidence 333356666666665555555444
No 102
>KOG0677|consensus
Probab=64.19 E-value=1.4e+02 Score=28.67 Aligned_cols=98 Identities=15% Similarity=0.196 Sum_probs=63.4
Q ss_pred CCcceEEEEecCCCCHHHHHHHHHHH-HHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCC
Q psy3431 134 HSVRDAVITVPAYFNDAQRQATKDAG-AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEG 212 (549)
Q Consensus 134 ~~~~~~vitVPa~f~~~qr~~l~~Aa-~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~ 212 (549)
.....+.+|=|+-=....|+.|.+.. +..||.-+.+--. |+.--|+..- -+=+|+|-|.|-+-+.-+-- +
T Consensus 99 p~~~KiLLTePPmNP~kNREKm~evMFEkY~F~gvyvaiQ--AVLtLYAQGL-----~tGvVvDSGDGVTHi~PVye--~ 169 (389)
T KOG0677|consen 99 PTNCKILLTEPPMNPTKNREKMIEVMFEKYGFGGVYVAIQ--AVLTLYAQGL-----LTGVVVDSGDGVTHIVPVYE--G 169 (389)
T ss_pred CccCeEEeeCCCCCccccHHHHHHHHHHHcCCCeEEehHH--HHHHHHHhcc-----cceEEEecCCCeeEEeeeec--c
Confidence 34457899999988888898877654 5668877655433 3332343321 22389999999988775531 1
Q ss_pred cEEEEEEecCCCCCCcchHHHHHHHHHHHH
Q psy3431 213 ALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 242 (549)
Q Consensus 213 ~~~~v~~~~~d~~lGG~~iD~~l~~~l~~~ 242 (549)
+....-..-..+.|++++.-|.+.+..+
T Consensus 170 --~~l~HLtrRldvAGRdiTryLi~LLl~r 197 (389)
T KOG0677|consen 170 --FVLPHLTRRLDVAGRDITRYLIKLLLRR 197 (389)
T ss_pred --eehhhhhhhccccchhHHHHHHHHHHhh
Confidence 2221222335688999999888887755
No 103
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=63.98 E-value=10 Score=33.47 Aligned_cols=18 Identities=28% Similarity=0.475 Sum_probs=16.0
Q ss_pred CEEEEEcCccceEEEEEE
Q psy3431 2 PAIGIDLGTTYSCVAVFQ 19 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~ 19 (549)
.|+|||.|++++..|+..
T Consensus 1 rILGIDPGl~~~G~av~~ 18 (154)
T cd00529 1 RILGIDPGSRNTGYGVIE 18 (154)
T ss_pred CEEEEccCcCceEEEEEE
Confidence 489999999999999864
No 104
>PLN02666 5-oxoprolinase
Probab=63.75 E-value=7.1 Score=46.49 Aligned_cols=41 Identities=32% Similarity=0.566 Sum_probs=27.9
Q ss_pred EeecchhHHHHhhhccc-CCCCCceEEEEEcCCCceeeeEEE
Q psy3431 168 RIVNEPTAAALAYGLDK-NLKGERNVLIFDLGGGTFDVSILS 208 (549)
Q Consensus 168 ~li~Ep~Aaal~y~~~~-~~~~~~~vlv~D~Gggt~dvsv~~ 208 (549)
.+.+=|.|..+.++... ......+++++|+||.|||++++.
T Consensus 291 ti~SGPAagv~Gaa~l~~~~~g~~~~I~~DmGGTTtDv~li~ 332 (1275)
T PLN02666 291 AILSGPAGGVVGYAQTTFGLETEKPVIGFDMGGTSTDVSRYD 332 (1275)
T ss_pred eEEECHHHHHHHHHHHhccccCCCCEEEEecCCceeeeEEEc
Confidence 45666776665543322 122346899999999999999983
No 105
>cd02641 R3H_Smubp-2_like R3H domain of Smubp-2_like proteins. Smubp-2_like proteins also contain a helicase_like and an AN1-like Zinc finger domain and have been shown to bind single-stranded DNA. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA.
Probab=60.32 E-value=30 Score=25.10 Aligned_cols=29 Identities=14% Similarity=0.234 Sum_probs=26.4
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCce
Q psy3431 138 DAVITVPAYFNDAQRQATKDAGAIAGLNV 166 (549)
Q Consensus 138 ~~vitVPa~f~~~qr~~l~~Aa~~AGl~~ 166 (549)
...+..|+.++..||..+.+.|+..||..
T Consensus 17 ~~~l~F~p~ls~~eR~~vH~lA~~~gL~s 45 (60)
T cd02641 17 ATELEFPPTLSSHDRLLVHELAEELGLRH 45 (60)
T ss_pred cCcEECCCCCCHHHHHHHHHHHHHcCCce
Confidence 36899999999999999999999999865
No 106
>PTZ00288 glucokinase 1; Provisional
Probab=60.15 E-value=39 Score=35.12 Aligned_cols=18 Identities=28% Similarity=0.431 Sum_probs=16.4
Q ss_pred EEEEEcCccceEEEEEEC
Q psy3431 3 AIGIDLGTTYSCVAVFQQ 20 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~ 20 (549)
++|+|.|.||+++++++.
T Consensus 28 ~~~~DiGgt~~R~~~~~~ 45 (405)
T PTZ00288 28 FVGCDVGGTNARVGFARE 45 (405)
T ss_pred EEEEEecCCceEEEEEec
Confidence 799999999999998864
No 107
>cd02646 R3H_G-patch R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=58.51 E-value=27 Score=25.06 Aligned_cols=41 Identities=20% Similarity=0.340 Sum_probs=30.9
Q ss_pred HHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCce
Q psy3431 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNV 166 (549)
Q Consensus 123 ~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~~AGl~~ 166 (549)
.+.+..+.++... .-.++.|+ ++..+|..+.+.|...||..
T Consensus 3 ~i~~~i~~F~~~~--~~~~~fpp-m~~~~R~~vH~lA~~~~L~S 43 (58)
T cd02646 3 DIKDEIEAFLLDS--RDSLSFPP-MDKHGRKTIHKLANCYNLKS 43 (58)
T ss_pred HHHHHHHHHHhCC--CceEecCC-CCHHHHHHHHHHHHHcCCcc
Confidence 3444455555433 45779999 89999999999999999865
No 108
>PTZ00294 glycerol kinase-like protein; Provisional
Probab=58.02 E-value=9.1 Score=41.19 Aligned_cols=20 Identities=35% Similarity=0.449 Sum_probs=17.2
Q ss_pred CC-EEEEEcCccceEEEEEEC
Q psy3431 1 MP-AIGIDLGTTYSCVAVFQQ 20 (549)
Q Consensus 1 m~-vvGID~Gtt~s~va~~~~ 20 (549)
|. ++|||+|||+++++++..
T Consensus 1 ~~~~lgiDiGTts~Ka~l~d~ 21 (504)
T PTZ00294 1 MKYIGSIDQGTTSTRFIIFDE 21 (504)
T ss_pred CcEEEEEecCCCceEEEEECC
Confidence 44 799999999999998854
No 109
>TIGR01234 L-ribulokinase L-ribulokinase. This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.
Probab=56.74 E-value=10 Score=41.15 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=16.2
Q ss_pred EEEEEcCccceEEEEEE
Q psy3431 3 AIGIDLGTTYSCVAVFQ 19 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~ 19 (549)
++|||+|||+++++++.
T Consensus 3 ~lgiD~GTss~Ka~l~d 19 (536)
T TIGR01234 3 AIGVDFGTLSGRALAVD 19 (536)
T ss_pred EEEEecCCCceEEEEEE
Confidence 79999999999999988
No 110
>PTZ00107 hexokinase; Provisional
Probab=56.61 E-value=57 Score=34.58 Aligned_cols=59 Identities=14% Similarity=0.122 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHcCC--ceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEE
Q psy3431 149 DAQRQATKDAGAIAGL--NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL 207 (549)
Q Consensus 149 ~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~ 207 (549)
..-.+.+.+|...-|+ +++.|+|+.+|.-++.++......+...+-+=+|-||--+.+.
T Consensus 194 ~DV~~lL~~Al~r~~l~v~v~AivNDTVgTL~a~ay~~~~~~~~~~iGlIlGTG~NacY~E 254 (464)
T PTZ00107 194 KDVGELLNDAFKRNNVPANVVAVLNDTVGTLISCAYQKPKNTPPCQVGVIIGTGSNACYFE 254 (464)
T ss_pred chHHHHHHHHHHHcCCCceEEEEEEcCHHHHHHHHhcCcCCCCCceEEEEEeccccceeee
Confidence 3344445555555454 5789999999998877665421112333334466666544444
No 111
>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]
Probab=56.60 E-value=11 Score=40.66 Aligned_cols=20 Identities=35% Similarity=0.592 Sum_probs=17.5
Q ss_pred CEEEEEcCccceEEEEEECC
Q psy3431 2 PAIGIDLGTTYSCVAVFQQG 21 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g 21 (549)
.++|||+|||++++.++...
T Consensus 5 ~~lgIDiGTt~~Kavl~d~~ 24 (502)
T COG1070 5 YVLGIDIGTTSVKAVLFDED 24 (502)
T ss_pred EEEEEEcCCCcEEEEEEeCC
Confidence 58999999999999988655
No 112
>PRK10331 L-fuculokinase; Provisional
Probab=56.31 E-value=8.9 Score=40.83 Aligned_cols=20 Identities=30% Similarity=0.380 Sum_probs=17.0
Q ss_pred EEEEEcCccceEEEEEE-CCe
Q psy3431 3 AIGIDLGTTYSCVAVFQ-QGK 22 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~-~g~ 22 (549)
++|||+|||+++++++. +|+
T Consensus 4 ~lgID~GTt~~Ka~l~d~~G~ 24 (470)
T PRK10331 4 ILVLDCGATNVRAIAVDRQGK 24 (470)
T ss_pred EEEEecCCCceEEEEEcCCCc
Confidence 79999999999999875 443
No 113
>PRK13318 pantothenate kinase; Reviewed
Probab=55.46 E-value=14 Score=35.87 Aligned_cols=20 Identities=30% Similarity=0.672 Sum_probs=17.9
Q ss_pred EEEEEcCccceEEEEEECCe
Q psy3431 3 AIGIDLGTTYSCVAVFQQGK 22 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g~ 22 (549)
+++||+|.|+++++++.++.
T Consensus 2 iL~IDIGnT~iK~al~d~g~ 21 (258)
T PRK13318 2 LLAIDVGNTNTVFGLYEGGK 21 (258)
T ss_pred EEEEEECCCcEEEEEEECCE
Confidence 79999999999999988654
No 114
>TIGR02628 fuculo_kin_coli L-fuculokinase. Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.
Probab=54.80 E-value=9.8 Score=40.46 Aligned_cols=18 Identities=17% Similarity=0.211 Sum_probs=16.3
Q ss_pred EEEEEcCccceEEEEEEC
Q psy3431 3 AIGIDLGTTYSCVAVFQQ 20 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~ 20 (549)
++|||+|||+++++++..
T Consensus 3 ilgiD~GTss~K~~l~d~ 20 (465)
T TIGR02628 3 ILVLDCGATNLRAIAINR 20 (465)
T ss_pred EEEEecCCCcEEEEEEcC
Confidence 799999999999998854
No 115
>cd02639 R3H_RRM R3H domain of mainly fungal proteins which are associated with a RNA recognition motif (RRM) domain. Present in this group is the RNA-binding post-transcriptional regulator Cip2 (Csx1-interacting protein 2) involved in counteracting Csx1 function. Csx1 plays a central role in controlling gene expression during oxidative stress. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Probab=54.70 E-value=27 Score=25.35 Aligned_cols=30 Identities=20% Similarity=0.300 Sum_probs=26.7
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCcee
Q psy3431 138 DAVITVPAYFNDAQRQATKDAGAIAGLNVM 167 (549)
Q Consensus 138 ~~vitVPa~f~~~qr~~l~~Aa~~AGl~~~ 167 (549)
.-.++.|+.+++.+|+.+...|...||...
T Consensus 17 ~~eL~Fp~~ls~~eRriih~la~~lGL~~~ 46 (60)
T cd02639 17 RDELAFPSSLSPAERRIVHLLASRLGLNHV 46 (60)
T ss_pred ceEEEcCCCCCHHHHHHHHHHHHHcCCceE
Confidence 557888999999999999999999998763
No 116
>PRK13321 pantothenate kinase; Reviewed
Probab=54.68 E-value=14 Score=35.69 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=18.2
Q ss_pred CEEEEEcCccceEEEEEECCe
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGK 22 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~ 22 (549)
++++||+|.|++++|++.++.
T Consensus 1 MiL~IDIGnT~ik~gl~~~~~ 21 (256)
T PRK13321 1 MLLLIDVGNTNIKLGVFDGDR 21 (256)
T ss_pred CEEEEEECCCeEEEEEEECCE
Confidence 379999999999999998663
No 117
>PRK04123 ribulokinase; Provisional
Probab=54.44 E-value=12 Score=40.66 Aligned_cols=17 Identities=29% Similarity=0.509 Sum_probs=16.1
Q ss_pred EEEEEcCccceEEEEEE
Q psy3431 3 AIGIDLGTTYSCVAVFQ 19 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~ 19 (549)
++|||+|||+++++++.
T Consensus 5 ~lgiD~GTts~Ka~l~d 21 (548)
T PRK04123 5 VIGLDFGTDSVRALLVD 21 (548)
T ss_pred EEEEecCCCceEEEEEE
Confidence 79999999999999987
No 118
>COG2410 Predicted nuclease (RNAse H fold) [General function prediction only]
Probab=53.43 E-value=25 Score=31.09 Aligned_cols=32 Identities=38% Similarity=0.527 Sum_probs=26.6
Q ss_pred CCEEEEEcCccc-eEEEEEECCeEEEEeCCCCC
Q psy3431 1 MPAIGIDLGTTY-SCVAVFQQGKVEIIANDQGN 32 (549)
Q Consensus 1 m~vvGID~Gtt~-s~va~~~~g~~~ii~~~~g~ 32 (549)
|++.|||+|--. +++|++.+|+.+++..+...
T Consensus 1 mmy~GIDla~k~~tavavl~~~~~~~i~~~s~~ 33 (178)
T COG2410 1 MMYAGIDLAVKRSTAVAVLIEGRIEIISAWSSR 33 (178)
T ss_pred CcccccccccCCCceEEEEECCEEEEEEccccc
Confidence 788999998776 48889999999999766553
No 119
>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []. This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....
Probab=53.01 E-value=98 Score=27.60 Aligned_cols=92 Identities=25% Similarity=0.273 Sum_probs=54.5
Q ss_pred eCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHH------------HHHHHHHH-HHcCCceeEeecchhHHH
Q psy3431 111 FAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ------------RQATKDAG-AIAGLNVMRIVNEPTAAA 177 (549)
Q Consensus 111 ~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~q------------r~~l~~Aa-~~AGl~~~~li~Ep~Aaa 177 (549)
.++++++..+.+.+.+.....- .. .+.|++|..++... --.+.+.. +..++ .+.+.++-.|+|
T Consensus 30 ~~~~~~~~~l~~~i~~~~~~~~-~~--gIgi~~pG~v~~~~g~i~~~~~~~~~~~~l~~~l~~~~~~-pv~i~Nd~~~~a 105 (179)
T PF00480_consen 30 TSPEELLDALAELIERLLADYG-RS--GIGISVPGIVDSEKGRIISSPNPGWENIPLKEELEERFGV-PVIIENDANAAA 105 (179)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHT-CE--EEEEEESSEEETTTTEEEECSSGTGTTCEHHHHHHHHHTS-EEEEEEHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHhhcc-cc--cEEEeccccCcCCCCeEEecCCCCcccCCHHHHhhcccce-EEEEecCCCcce
Confidence 5677777777776666655542 22 66677776553332 01122211 23355 458999999999
Q ss_pred HhhhcccCCCCCceEEEEEcCCCceeeeEE
Q psy3431 178 LAYGLDKNLKGERNVLIFDLGGGTFDVSIL 207 (549)
Q Consensus 178 l~y~~~~~~~~~~~vlv~D~Gggt~dvsv~ 207 (549)
++..........++++++-+|-| .-.+++
T Consensus 106 ~ae~~~~~~~~~~~~~~l~ig~G-iG~~ii 134 (179)
T PF00480_consen 106 LAEYWFGAAKDCDNFLYLYIGTG-IGAGII 134 (179)
T ss_dssp HHHHHHSTTTTTSSEEEEEESSS-EEEEEE
T ss_pred eehhhcCccCCcceEEEEEeecC-CCccee
Confidence 88766444334567888888875 444444
No 120
>PLN02914 hexokinase
Probab=52.71 E-value=2.7e+02 Score=29.83 Aligned_cols=65 Identities=17% Similarity=0.132 Sum_probs=43.2
Q ss_pred EEecCCCCHHHHHHHHHHHHHcCC--ceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEe
Q psy3431 141 ITVPAYFNDAQRQATKDAGAIAGL--NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSI 209 (549)
Q Consensus 141 itVPa~f~~~qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~ 209 (549)
+.+|..-...-.+.+.+|.+.-|+ ++..|||+.+|..++.++..+ ...+-+=+|-||--+.+-++
T Consensus 197 F~~~gv~G~DVv~lL~~Al~r~~l~v~v~AivNDTVGTL~a~aY~~~----~~~iGlIlGTGtNacY~E~~ 263 (490)
T PLN02914 197 FAVSGTAGKDVVACLNEAMERQGLDMRVSALVNDTVGTLAGARYWDD----DVMVAVILGTGTNACYVERT 263 (490)
T ss_pred cccCCccCchHHHHHHHHHHHcCCCceEEEEEEcCHHHHHhhhcCCC----CceEEEEEECCeeeEEEeec
Confidence 344444455667888899887776 578899999998877655432 34444446777766655544
No 121
>PRK15027 xylulokinase; Provisional
Probab=52.59 E-value=11 Score=40.45 Aligned_cols=18 Identities=44% Similarity=0.606 Sum_probs=16.2
Q ss_pred EEEEEcCccceEEEEEEC
Q psy3431 3 AIGIDLGTTYSCVAVFQQ 20 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~ 20 (549)
++|||+|||+++++++..
T Consensus 2 ~lgID~GTts~Ka~l~d~ 19 (484)
T PRK15027 2 YIGIDLGTSGVKVILLNE 19 (484)
T ss_pred EEEEEecccceEEEEEcC
Confidence 699999999999998854
No 122
>PRK10939 autoinducer-2 (AI-2) kinase; Provisional
Probab=52.50 E-value=11 Score=40.76 Aligned_cols=18 Identities=22% Similarity=0.368 Sum_probs=16.3
Q ss_pred EEEEEcCccceEEEEEEC
Q psy3431 3 AIGIDLGTTYSCVAVFQQ 20 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~ 20 (549)
++|||+|||+++++++..
T Consensus 5 ~lgID~GTts~Ka~l~d~ 22 (520)
T PRK10939 5 LMALDAGTGSIRAVIFDL 22 (520)
T ss_pred EEEEecCCCceEEEEECC
Confidence 899999999999998854
No 123
>PLN02405 hexokinase
Probab=51.80 E-value=60 Score=34.68 Aligned_cols=55 Identities=20% Similarity=0.094 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHcCC--ceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEe
Q psy3431 151 QRQATKDAGAIAGL--NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSI 209 (549)
Q Consensus 151 qr~~l~~Aa~~AGl--~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~ 209 (549)
-.+.+.+|...-|+ ++..|||+.++.-++.++..+ ...+-+=+|-||--+.+-+.
T Consensus 207 Vv~lL~~Al~r~~l~v~v~AlvNDTVGTL~a~aY~~~----~~~iG~IlGTGtNacY~E~~ 263 (497)
T PLN02405 207 VVGELTKAMERVGLDMRVSALVNDTIGTLAGGRYYNP----DVVAAVILGTGTNAAYVERA 263 (497)
T ss_pred HHHHHHHHHHHcCCCceEEEEEecCHHHHHHhhcCCC----CceEEEEEeCCeeeEEEeec
Confidence 34445555555555 568899999998877665432 34444446777765555443
No 124
>TIGR01314 gntK_FGGY gluconate kinase, FGGY type. Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.
Probab=51.23 E-value=12 Score=40.39 Aligned_cols=18 Identities=39% Similarity=0.765 Sum_probs=16.1
Q ss_pred EEEEEcCccceEEEEEEC
Q psy3431 3 AIGIDLGTTYSCVAVFQQ 20 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~ 20 (549)
++|||+|||+++++++..
T Consensus 2 ~lgiDiGtt~~K~~l~d~ 19 (505)
T TIGR01314 2 MIGVDIGTTSTKAVLFEE 19 (505)
T ss_pred EEEEeccccceEEEEEcC
Confidence 699999999999998854
No 125
>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase). This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.
Probab=50.95 E-value=45 Score=33.23 Aligned_cols=94 Identities=26% Similarity=0.357 Sum_probs=54.4
Q ss_pred CHHHHHHHHHHHHHHHHHHH--hCCCcceEEEEecCCCCHHH------------HHHHHHHHH-HcCCceeEeecchhHH
Q psy3431 112 APEEISSMVLTKMKETAEAY--LGHSVRDAVITVPAYFNDAQ------------RQATKDAGA-IAGLNVMRIVNEPTAA 176 (549)
Q Consensus 112 ~~~~v~~~~L~~l~~~a~~~--~~~~~~~~vitVPa~f~~~q------------r~~l~~Aa~-~AGl~~~~li~Ep~Aa 176 (549)
++++++..+.+.+.+..+.. ...++..+.|++|...+... .-.+.+..+ ..|++ +.+.|+..|+
T Consensus 32 ~~~~~~~~l~~~i~~~~~~~~~~~~~i~gIgva~pG~vd~~~g~~~~~~~~~w~~~~l~~~l~~~~~~p-v~v~NDa~~~ 110 (318)
T TIGR00744 32 TPETIVDAIASAVDSFIQHIAKVGHEIVAIGIGAPGPVNRQRGTVYFAVNLDWKQEPLKEKVEARVGLP-VVVENDANAA 110 (318)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCccceEEEEEeccccccCCCCEEEecCCCCCCCCCHHHHHHHHHCCC-EEEechHHHH
Confidence 34555555555554444332 12356778888887554321 112333333 34665 5799999999
Q ss_pred HHhhhcccCCCCCceEEEEEcCCCceeeeEE
Q psy3431 177 ALAYGLDKNLKGERNVLIFDLGGGTFDVSIL 207 (549)
Q Consensus 177 al~y~~~~~~~~~~~vlv~D~Gggt~dvsv~ 207 (549)
|++-.........++++++.+|.|- -.+++
T Consensus 111 alaE~~~g~~~~~~~~~~v~igtGi-G~giv 140 (318)
T TIGR00744 111 ALGEYKKGAGKGARDVICITLGTGL-GGGII 140 (318)
T ss_pred HHHHHHhcccCCCCcEEEEEeCCcc-EEEEE
Confidence 9876543332345788888999875 55554
No 126
>PF13941 MutL: MutL protein
Probab=50.78 E-value=13 Score=39.14 Aligned_cols=25 Identities=32% Similarity=0.741 Sum_probs=21.3
Q ss_pred EEEEEcCccceEEEEEE--CCeEEEEe
Q psy3431 3 AIGIDLGTTYSCVAVFQ--QGKVEIIA 27 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~--~g~~~ii~ 27 (549)
++-+|||||+|++..+. .+..+++.
T Consensus 2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig 28 (457)
T PF13941_consen 2 VLVVDIGSTYTKVTLFDLVDGEPRLIG 28 (457)
T ss_pred EEEEEeCCcceEEeEEeccCCccEEEE
Confidence 68899999999999987 77777763
No 127
>KOG4001|consensus
Probab=50.61 E-value=1.1e+02 Score=28.02 Aligned_cols=49 Identities=16% Similarity=0.238 Sum_probs=34.8
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhhhccCccChhHHHHHHHHHHHHHHHhhc
Q psy3431 450 QKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDN 499 (549)
Q Consensus 450 ~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~~~e~~~i~~~l~~~~~Wl~~ 499 (549)
.+..+..+.+||.-|.+++.+++.. +..++++|+...++..+..++|..
T Consensus 194 ~k~le~~k~~Le~~ia~~k~K~e~~-e~r~~E~r~ieEkk~~eei~fLk~ 242 (259)
T KOG4001|consen 194 WKVLEDKKKELELKIAQLKKKLETD-EIRSEEEREIEEKKMKEEIEFLKE 242 (259)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHHH
Confidence 3444566778888888888888643 344667777777778888777764
No 128
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=50.29 E-value=1.5e+02 Score=24.82 Aligned_cols=49 Identities=16% Similarity=0.211 Sum_probs=26.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy3431 480 ESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGG 532 (549)
Q Consensus 480 ~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~~ 532 (549)
...++.+...|++-.+.|+- ....++..-+.|+..++.+...+..+.++
T Consensus 65 k~~k~~~~~eL~er~E~Le~----ri~tLekQe~~l~e~l~eLq~~i~~~l~~ 113 (119)
T COG1382 65 KVSKEEAVDELEERKETLEL----RIKTLEKQEEKLQERLEELQSEIQKALGD 113 (119)
T ss_pred hhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 33566666666666666653 23344444444555555555555555544
No 129
>PLN02295 glycerol kinase
Probab=49.59 E-value=13 Score=40.16 Aligned_cols=18 Identities=28% Similarity=0.410 Sum_probs=16.1
Q ss_pred EEEEEcCccceEEEEEEC
Q psy3431 3 AIGIDLGTTYSCVAVFQQ 20 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~ 20 (549)
++|||+|||+++++++..
T Consensus 2 vlgID~GTts~Ka~l~d~ 19 (512)
T PLN02295 2 VGAIDQGTTSTRFIIYDR 19 (512)
T ss_pred EEEEecCCCceEEEEECC
Confidence 799999999999998853
No 130
>PF15290 Syntaphilin: Golgi-localised syntaxin-1-binding clamp
Probab=49.54 E-value=80 Score=30.48 Aligned_cols=25 Identities=8% Similarity=0.290 Sum_probs=15.2
Q ss_pred hHHHHHHHHHhhhHHHHHHHHHHHh
Q psy3431 447 DEKQKERISARNNLEAYVFNVKQAL 471 (549)
Q Consensus 447 D~~~~~~~~a~N~LE~~iy~~r~~l 471 (549)
+....+|.-..-+|.+-++.||+.-
T Consensus 81 ~~~l~dRetEI~eLksQL~RMrEDW 105 (305)
T PF15290_consen 81 ENRLHDRETEIDELKSQLARMREDW 105 (305)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 3344555555666777777887543
No 131
>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase. This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.
Probab=49.51 E-value=14 Score=40.09 Aligned_cols=17 Identities=29% Similarity=0.561 Sum_probs=15.7
Q ss_pred EEEEEcCccceEEEEEE
Q psy3431 3 AIGIDLGTTYSCVAVFQ 19 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~ 19 (549)
++|||+|||+++++++.
T Consensus 2 ~lgID~GTts~Ka~l~d 18 (541)
T TIGR01315 2 YIGVDVGTGSARACIID 18 (541)
T ss_pred EEEEEecCcCEEEEEEc
Confidence 68999999999999885
No 132
>PF13941 MutL: MutL protein
Probab=48.98 E-value=8.2 Score=40.50 Aligned_cols=41 Identities=32% Similarity=0.415 Sum_probs=26.7
Q ss_pred eEeecchhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEE
Q psy3431 167 MRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILS 208 (549)
Q Consensus 167 ~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~ 208 (549)
-.+++=|.|+.....+-.. .....+|++|+||-|||+-.+.
T Consensus 226 ~~i~PTP~AVl~~~~lla~-~~~g~llvVDIGGATTDVhSv~ 266 (457)
T PF13941_consen 226 GPIMPTPAAVLRAAELLAE-GGIGDLLVVDIGGATTDVHSVA 266 (457)
T ss_pred CcccCCHHHHHHHHHHHHh-cccCCEEEEEccCcccchhhhc
Confidence 3566666665433322111 1467899999999999987665
No 133
>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A. This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).
Probab=48.55 E-value=15 Score=37.51 Aligned_cols=20 Identities=30% Similarity=0.513 Sum_probs=18.0
Q ss_pred EEEEEcCccceEEEEEECCe
Q psy3431 3 AIGIDLGTTYSCVAVFQQGK 22 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g~ 22 (549)
++|||.|+|.+++.+.+++.
T Consensus 4 ~lGIDIGSTsTKaVVmd~~g 23 (432)
T TIGR02259 4 FVGIDLGSTTTKAVLMDDKG 23 (432)
T ss_pred EEEEEcCchhEEEEEEcCCC
Confidence 79999999999999988764
No 134
>PF08006 DUF1700: Protein of unknown function (DUF1700); InterPro: IPR012963 This family contains many hypothetical bacterial proteins and two putative membrane proteins (Q6GFD0 from SWISSPROT and Q6G806 from SWISSPROT).
Probab=48.20 E-value=55 Score=29.66 Aligned_cols=57 Identities=16% Similarity=0.268 Sum_probs=34.2
Q ss_pred HHHHHHHHHHhhhccCccChhHHHHHHHHHHHHHHHhhcCC--cCCHHHHHHHHHHHHHHHHHHHH
Q psy3431 461 EAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNT--LADKEEYQDKLQQLQKSCMPLMS 524 (549)
Q Consensus 461 E~~iy~~r~~l~~~~~~~~~~e~~~i~~~l~~~~~Wl~~~~--~a~~~~~~~kl~~L~~~~~~i~~ 524 (549)
++|+.+++..|. .++++|++++ ++..++++++.. ..+.++.-++|-.-+++++.+..
T Consensus 4 ~efL~~L~~~L~----~lp~~e~~e~---l~~Y~e~f~d~~~~G~sEeeii~~LG~P~~iA~~i~~ 62 (181)
T PF08006_consen 4 NEFLNELEKYLK----KLPEEEREEI---LEYYEEYFDDAGEEGKSEEEIIAELGSPKEIAREILA 62 (181)
T ss_pred HHHHHHHHHHHH----cCCHHHHHHH---HHHHHHHHHHhhhCCCCHHHHHHHcCCHHHHHHHHHH
Confidence 356666666664 3666665544 556666666532 24666776677666666666664
No 135
>TIGR01311 glycerol_kin glycerol kinase. This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.
Probab=47.52 E-value=16 Score=39.23 Aligned_cols=18 Identities=44% Similarity=0.582 Sum_probs=16.1
Q ss_pred EEEEEcCccceEEEEEEC
Q psy3431 3 AIGIDLGTTYSCVAVFQQ 20 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~ 20 (549)
++|||+|||+++++++..
T Consensus 3 ~lgiDiGtt~iKa~l~d~ 20 (493)
T TIGR01311 3 ILAIDQGTTSSRAIVFDK 20 (493)
T ss_pred EEEEecCCCceEEEEECC
Confidence 799999999999998853
No 136
>COG4296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=47.30 E-value=48 Score=28.06 Aligned_cols=22 Identities=14% Similarity=0.554 Sum_probs=17.2
Q ss_pred HHHHHhhcC-CcCCHHHHHHHHH
Q psy3431 492 ATLKWLDNN-TLADKEEYQDKLQ 513 (549)
Q Consensus 492 ~~~~Wl~~~-~~a~~~~~~~kl~ 513 (549)
+.++||+++ +..|.++|++|..
T Consensus 90 knE~WleEDe~~iTpE~fk~Rm~ 112 (156)
T COG4296 90 KNEDWLEEDEQPITPESFKERMA 112 (156)
T ss_pred chhhhhhccCCccCHHHHHHHhh
Confidence 457899976 4689999988764
No 137
>PRK13317 pantothenate kinase; Provisional
Probab=47.26 E-value=18 Score=35.54 Aligned_cols=20 Identities=30% Similarity=0.474 Sum_probs=17.1
Q ss_pred CEEEEEcCccceEEEEEECC
Q psy3431 2 PAIGIDLGTTYSCVAVFQQG 21 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g 21 (549)
..+|||.|+|.+++++..++
T Consensus 3 ~~iGIDiGstt~K~v~~~~~ 22 (277)
T PRK13317 3 MKIGIDAGGTLTKIVYLEEK 22 (277)
T ss_pred ceEEEEeCcccEEEEEEcCC
Confidence 47999999999999987653
No 138
>PRK00047 glpK glycerol kinase; Provisional
Probab=46.95 E-value=16 Score=39.18 Aligned_cols=18 Identities=33% Similarity=0.549 Sum_probs=16.1
Q ss_pred EEEEEcCccceEEEEEEC
Q psy3431 3 AIGIDLGTTYSCVAVFQQ 20 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~ 20 (549)
++|||+|||+++++++..
T Consensus 7 ~lgiD~GTts~Ka~l~d~ 24 (498)
T PRK00047 7 ILALDQGTTSSRAIIFDH 24 (498)
T ss_pred EEEEecCCCceEEEEECC
Confidence 799999999999998853
No 139
>PLN02939 transferase, transferring glycosyl groups
Probab=46.29 E-value=1.2e+02 Score=35.15 Aligned_cols=71 Identities=18% Similarity=0.178 Sum_probs=54.2
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhcc---CccChhHHHHHHHHHHHHHHHhh
Q psy3431 428 LSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAG---NKLTESEKSRCREECDATLKWLD 498 (549)
Q Consensus 428 ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~---~~~~~~e~~~i~~~l~~~~~Wl~ 498 (549)
+-+++++-++..+.+..+-|+.....+..|.-|++++-++..++-... ..+++-+-+.+.++++.++..|+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (977)
T PLN02939 237 LLKDDIQFLKAELIEVAETEERVFKLEKERSLLDASLRELESKFIVAQEDVSKLSPLQYDCWWEKVENLQDLLD 310 (977)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhccchhHHHHHHHHHHHHHHHH
Confidence 557888899999999999998888888899999999999888885433 34455555556666666666665
No 140
>TIGR00250 RNAse_H_YqgF RNAse H-fold protein YqgF. This protein family, which exhibits an RNAse H fold in crystal structure, has been proposed as a putative Holliday junction resolvase, an alternate to RuvC.
Probab=45.04 E-value=14 Score=31.66 Aligned_cols=17 Identities=35% Similarity=0.419 Sum_probs=15.0
Q ss_pred EEEEcCccceEEEEEEC
Q psy3431 4 IGIDLGTTYSCVAVFQQ 20 (549)
Q Consensus 4 vGID~Gtt~s~va~~~~ 20 (549)
+|||+|+..+.+|+..+
T Consensus 1 laiD~G~kriGvA~~d~ 17 (130)
T TIGR00250 1 LGLDFGTKSIGVAGQDI 17 (130)
T ss_pred CeEccCCCeEEEEEECC
Confidence 59999999999998755
No 141
>PRK13331 pantothenate kinase; Reviewed
Probab=44.19 E-value=28 Score=33.52 Aligned_cols=22 Identities=9% Similarity=0.083 Sum_probs=19.5
Q ss_pred CCEEEEEcCccceEEEEEECCe
Q psy3431 1 MPAIGIDLGTTYSCVAVFQQGK 22 (549)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~g~ 22 (549)
|.++.||.|+|+++++++++++
T Consensus 7 ~~~L~iDiGNT~~~~g~f~~~~ 28 (251)
T PRK13331 7 NEWLALMIGNSRLHWGYFSGET 28 (251)
T ss_pred CcEEEEEeCCCcEEEEEEECCE
Confidence 5689999999999999998654
No 142
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=44.11 E-value=41 Score=29.53 Aligned_cols=17 Identities=35% Similarity=0.536 Sum_probs=13.4
Q ss_pred EEEEEcCccceEEEEEE
Q psy3431 3 AIGIDLGTTYSCVAVFQ 19 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~ 19 (549)
|+|||-|++++..|+..
T Consensus 1 ILGIDPgl~~tG~avi~ 17 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIE 17 (149)
T ss_dssp EEEEE--SSEEEEEEEE
T ss_pred CEEECCCCCCeeEEEEE
Confidence 79999999999999873
No 143
>PF04848 Pox_A22: Poxvirus A22 protein; InterPro: IPR006932 This family, representing the Poxvirus A22 protein, is a Holliday junction resolvase, it specifically cleaves and resolves four-way DNA Holliday junctions into linear duplex products. ; GO: 0000287 magnesium ion binding, 0000400 four-way junction DNA binding, 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination
Probab=42.96 E-value=39 Score=29.39 Aligned_cols=20 Identities=20% Similarity=0.356 Sum_probs=17.8
Q ss_pred CCEEEEEcCccceEEEEEEC
Q psy3431 1 MPAIGIDLGTTYSCVAVFQQ 20 (549)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~ 20 (549)
|.|++||.|+-|.+.++...
T Consensus 1 mii~sIDiGikNlA~~iie~ 20 (143)
T PF04848_consen 1 MIILSIDIGIKNLAYCIIEF 20 (143)
T ss_pred CeEEEEecCCCceeEEEEEc
Confidence 78999999999999998753
No 144
>PRK13320 pantothenate kinase; Reviewed
Probab=40.97 E-value=32 Score=33.05 Aligned_cols=22 Identities=32% Similarity=0.454 Sum_probs=19.2
Q ss_pred CCEEEEEcCccceEEEEEECCe
Q psy3431 1 MPAIGIDLGTTYSCVAVFQQGK 22 (549)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~g~ 22 (549)
|+++.||.|+|+++.+++.+++
T Consensus 2 ~M~L~iDiGNT~ik~~~~~~~~ 23 (244)
T PRK13320 2 SMNLVIDIGNTTTKLAVFEGDE 23 (244)
T ss_pred ceEEEEEeCCCcEEEEEEECCE
Confidence 4589999999999999998664
No 145
>KOG0103|consensus
Probab=38.96 E-value=86 Score=34.39 Aligned_cols=63 Identities=25% Similarity=0.486 Sum_probs=45.0
Q ss_pred HHhhhHHHHHHHHHHHhhhccCccChhHHHHHHHHHHHHHHHhhcC---C-----cCC---HHHHHHHHHHHHHHHHHHH
Q psy3431 455 SARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNN---T-----LAD---KEEYQDKLQQLQKSCMPLM 523 (549)
Q Consensus 455 ~a~N~LE~~iy~~r~~l~~~~~~~~~~e~~~i~~~l~~~~~Wl~~~---~-----~a~---~~~~~~kl~~L~~~~~~i~ 523 (549)
.+..+|+..|..+|..+. ++.++....+.+.+.|++.. + +++ .++.+.+-++|.+.+.++.
T Consensus 652 k~~d~~~~~i~~~r~~~~--------~~~~k~~~~~~~a~kw~~~~~~~q~~~~~t~~pv~~~e~~~~~~~l~~~~~~i~ 723 (727)
T KOG0103|consen 652 KAFDELGKKIQEIRKAIE--------SEMEKVLLEIEEAEKWLERKSNKQNKLSKTADPVPSSEIESEAKELNNTCSDII 723 (727)
T ss_pred HHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHhhhhhhhhcccCCCCCCchHHHHHhhhhhcccccccc
Confidence 344555555655555543 27778888899999999853 1 233 3889999999999999987
Q ss_pred HH
Q psy3431 524 SK 525 (549)
Q Consensus 524 ~r 525 (549)
.+
T Consensus 724 ~~ 725 (727)
T KOG0103|consen 724 SK 725 (727)
T ss_pred cc
Confidence 64
No 146
>COG5026 Hexokinase [Carbohydrate transport and metabolism]
Probab=38.44 E-value=33 Score=35.45 Aligned_cols=31 Identities=26% Similarity=0.556 Sum_probs=25.2
Q ss_pred CCceEEEEEcCCCceeeeEEEeeCCcEEEEE
Q psy3431 188 GERNVLIFDLGGGTFDVSILSIDEGALFEVR 218 (549)
Q Consensus 188 ~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~ 218 (549)
+.+.+|++|+||..+-+++|++.+.+.+++.
T Consensus 73 e~g~~LaiD~GGTnlRvc~V~l~g~gt~~~~ 103 (466)
T COG5026 73 ESGSVLAIDLGGTNLRVCLVVLGGDGTFDIE 103 (466)
T ss_pred CCCCEEEEecCCceEEEEEEEeCCCCCcccc
Confidence 6788999999999999999999843355443
No 147
>PRK00292 glk glucokinase; Provisional
Probab=37.51 E-value=32 Score=34.41 Aligned_cols=42 Identities=24% Similarity=0.222 Sum_probs=27.7
Q ss_pred HHcCCceeEeecchhHHHHhhhcc--------cCCC--CCceEEEEEcCCCc
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLD--------KNLK--GERNVLIFDLGGGT 201 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~--------~~~~--~~~~vlv~D~Gggt 201 (549)
+..|++.+.+.|+-.|+|++-... .... ....++++-+|.|-
T Consensus 88 ~~~~~p~v~l~ND~~aaalgE~~~~~~~~~~~g~~~~~~~~~~~~v~~GTGi 139 (316)
T PRK00292 88 QELGLDHLLLINDFTAQALAIPRLGEEDLVQIGGGEPVPGAPIAVIGPGTGL 139 (316)
T ss_pred HHhCCCeEEEEecHHHHHcccccCCHhheeEeCCCCCCCCCcEEEEEcCCcc
Confidence 345887789999999999875331 1111 13567888777654
No 148
>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P). The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....
Probab=36.75 E-value=34 Score=31.86 Aligned_cols=33 Identities=30% Similarity=0.275 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHcCCc---eeEeecchhHHHHhhhc
Q psy3431 150 AQRQATKDAGAIAGLN---VMRIVNEPTAAALAYGL 182 (549)
Q Consensus 150 ~qr~~l~~Aa~~AGl~---~~~li~Ep~Aaal~y~~ 182 (549)
.-.+.+.+|....|++ ++.++|+.+|.-++.++
T Consensus 169 dv~~lL~~al~r~~~~~v~v~aivNDTVgTLla~~Y 204 (206)
T PF00349_consen 169 DVVELLQDALKRRGLPNVKVVAIVNDTVGTLLAGAY 204 (206)
T ss_dssp BHHHHHHHHHHHHTSSEEEEEEEE-HHHHHHHHHHT
T ss_pred ccchhHHHHHHHhcccCcceEEEEECCHHHhhhhhc
Confidence 3345666676777764 67899999998877654
No 149
>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination. HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.
Probab=36.25 E-value=2.4e+02 Score=24.71 Aligned_cols=30 Identities=10% Similarity=0.137 Sum_probs=23.2
Q ss_pred eEEEEEcCCCceeeeEEEeeCCcEEEEEEec
Q psy3431 191 NVLIFDLGGGTFDVSILSIDEGALFEVRSTA 221 (549)
Q Consensus 191 ~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~ 221 (549)
+||-+|.|-.+|-.++++..++ .++++..+
T Consensus 1 rILGIDPGl~~~G~av~~~~~~-~~~~~~~g 30 (154)
T cd00529 1 RILGIDPGSRNTGYGVIEQEGR-KLIYLASG 30 (154)
T ss_pred CEEEEccCcCceEEEEEEeeCC-eEEEEEee
Confidence 3788999999999999988776 66555433
No 150
>PRK13326 pantothenate kinase; Reviewed
Probab=35.80 E-value=41 Score=32.65 Aligned_cols=21 Identities=29% Similarity=0.499 Sum_probs=18.6
Q ss_pred CEEEEEcCccceEEEEEECCe
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGK 22 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~ 22 (549)
+++.||.|+|+++++++.+++
T Consensus 7 ~~L~IDiGNT~ik~glf~~~~ 27 (262)
T PRK13326 7 SQLIIDIGNTSISFALYKDNK 27 (262)
T ss_pred EEEEEEeCCCeEEEEEEECCE
Confidence 478999999999999998765
No 151
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=34.39 E-value=2.3e+02 Score=22.37 Aligned_cols=67 Identities=18% Similarity=0.317 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHhhhhh--hHHHHHHHHHhhhHHHHHHHHHHHhhhccCccChhHHHHHHHHHHHHHHHhhcCC
Q psy3431 431 EEIDRMINDAERYKDE--DEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNT 501 (549)
Q Consensus 431 eei~~~~~~~~~~~~~--D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~~~e~~~i~~~l~~~~~Wl~~~~ 501 (549)
+++..++..++.+... +.-.....+++..+++.+..+|+.+.+ ....=++...+....+.+++.+++
T Consensus 5 ~~l~~l~~d~~~l~~~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~----~~~~~~~~~~~~~~~~~~~V~e~P 73 (94)
T PF05957_consen 5 AELEQLRADLEDLARSAADLAGEKADEARDRAEEALDDARDRAED----AADQAREQAREAAEQTEDYVRENP 73 (94)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHCh
Confidence 4556666666655532 223344556777777777777777753 223334556666666666666653
No 152
>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X.
Probab=34.19 E-value=47 Score=34.51 Aligned_cols=44 Identities=18% Similarity=0.298 Sum_probs=26.9
Q ss_pred EEEEEcCccceEEEEEECCeEEEEeCCCCCccceeEEEEeCCceEEcHhhHHhh
Q psy3431 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 56 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g~~~ii~~~~g~~~~Ps~v~~~~~~~~~G~~A~~~~ 56 (549)
-++||+|||...++++.-..- .+-...+..+.++.+|.+...+.
T Consensus 3 GiAvDiGTTti~~~L~dl~~G----------~~l~~~s~~NpQ~~~GaDViSRI 46 (412)
T PF14574_consen 3 GIAVDIGTTTIAAYLVDLETG----------EVLATASFLNPQRAYGADVISRI 46 (412)
T ss_dssp EEEEEE-SSEEEEEEEETTT------------EEEEEEEE-GGGGT-SSHHHHH
T ss_pred EEEEEcchhheeeEEEECCCC----------CEEEeecccCCCCCcchHHHHHH
Confidence 589999999999998753221 22334555666777887766653
No 153
>PLN02362 hexokinase
Probab=34.03 E-value=60 Score=34.79 Aligned_cols=25 Identities=24% Similarity=0.349 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCceeeeEEEeeCC
Q psy3431 188 GERNVLIFDLGGGTFDVSILSIDEG 212 (549)
Q Consensus 188 ~~~~vlv~D~Gggt~dvsv~~~~~~ 212 (549)
+...+|.+|+||.++-|..+++.++
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (509)
T PLN02362 93 EIGTYYALDLGGTNFRVLRVQLGGQ 117 (509)
T ss_pred cceeEEEEecCCceEEEEEEEecCC
Confidence 5677999999999999999999764
No 154
>PRK00039 ruvC Holliday junction resolvase; Reviewed
Probab=33.99 E-value=3.4e+02 Score=24.17 Aligned_cols=31 Identities=10% Similarity=0.141 Sum_probs=23.1
Q ss_pred ceEEEEEcCCCceeeeEEEeeCCcEEEEEEec
Q psy3431 190 RNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 221 (549)
Q Consensus 190 ~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~ 221 (549)
..+|-+|-|-..+=.++++..+. .+..+..+
T Consensus 2 m~iLGIDPgl~~tG~avi~~~~~-~~~~~~~G 32 (164)
T PRK00039 2 MRILGIDPGLRRTGYGVIEVEGR-RLSYVASG 32 (164)
T ss_pred CEEEEEccccCceeEEEEEecCC-eEEEEEee
Confidence 36788999999999999988754 55555433
No 155
>PLN02669 xylulokinase
Probab=33.75 E-value=33 Score=37.41 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=15.7
Q ss_pred EEEEEcCccceEEEEEE
Q psy3431 3 AIGIDLGTTYSCVAVFQ 19 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~ 19 (549)
++|||+||+.++++++.
T Consensus 10 ~LGiD~GT~s~Ka~l~d 26 (556)
T PLN02669 10 FLGFDSSTQSLKATVLD 26 (556)
T ss_pred EEEEecccCCeEEEEEc
Confidence 79999999999999875
No 156
>PLN00130 succinate dehydrogenase (SDH3); Provisional
Probab=33.11 E-value=5.6 Score=35.29 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=16.0
Q ss_pred EEEEEcCccceEEEEEECC
Q psy3431 3 AIGIDLGTTYSCVAVFQQG 21 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g 21 (549)
++|+|+||+|++++...+.
T Consensus 59 ~~g~~~gt~n~~~~~~e~~ 77 (213)
T PLN00130 59 ILGTGLGTNNAIREEREKS 77 (213)
T ss_pred eeccCCCcchHHHHHHhcc
Confidence 6999999999999876543
No 157
>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []. RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.
Probab=32.95 E-value=2.6e+02 Score=24.41 Aligned_cols=44 Identities=16% Similarity=0.185 Sum_probs=25.4
Q ss_pred EEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHH
Q psy3431 192 VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 236 (549)
Q Consensus 192 vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~ 236 (549)
||-+|-|-.++-.++++..++ .++.+..+.-..-....+.++|.
T Consensus 1 ILGIDPgl~~tG~avi~~~~~-~~~~i~~G~I~t~~~~~~~~Rl~ 44 (149)
T PF02075_consen 1 ILGIDPGLSNTGYAVIEEDGG-KLRLIDYGTIKTSSKDSLPERLK 44 (149)
T ss_dssp EEEEE--SSEEEEEEEEEETT-EEEEEEEEEEE---S--HHHHHH
T ss_pred CEEECCCCCCeeEEEEEeeCC-EEEEEEeCeEECCCCCCHHHHHH
Confidence 577999999999999999766 66666554322222334555554
No 158
>KOG0104|consensus
Probab=32.52 E-value=3.9e+02 Score=30.03 Aligned_cols=53 Identities=19% Similarity=0.338 Sum_probs=43.3
Q ss_pred ccChhHHHHHHHHHHHHHHHhhcCC------------cCCHHHHHHHHHHHHHHHHHHHHHHhcC
Q psy3431 477 KLTESEKSRCREECDATLKWLDNNT------------LADKEEYQDKLQQLQKSCMPLMSKMHGG 529 (549)
Q Consensus 477 ~~~~~e~~~i~~~l~~~~~Wl~~~~------------~a~~~~~~~kl~~L~~~~~~i~~r~~e~ 529 (549)
.++..+.+.|.+.+.++..|+.+.. -.+.+++.+|.+.|.....-...|+.-.
T Consensus 774 ~ft~~e~~~L~k~i~~t~~W~~~~~~~~~k~~k~edp~~k~kei~~K~k~Ldrev~~~lnK~k~~ 838 (902)
T KOG0104|consen 774 IFTKTEIDTLEKVIAKTTAWLNDRLDLFEKKAKTEDPVLKVKEIEEKAKSLDREVLYLLNKLKIR 838 (902)
T ss_pred chhhhhHHHHHHHHHHhHHHhhhhHHHHHhhhcccCccccHHHHHHHHHhhHHHHHHHHHHhhcc
Confidence 4778899999999999999998531 1367889999999999888888877654
No 159
>PF01150 GDA1_CD39: GDA1/CD39 (nucleoside phosphatase) family; InterPro: IPR000407 A number of nucleoside diphosphate and triphosphate hydrolases as well as some yet uncharacterised proteins have been found to belong to the same family [, ]. The uncharacterised proteins all seem to be membrane-bound. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0016787 hydrolase activity; PDB: 3AAP_A 3AAR_A 3AAQ_A 3AGR_A 4A5B_B 4A57_D 4A59_A 4A5A_B 3CJA_A 3CJ1_A ....
Probab=31.87 E-value=49 Score=34.77 Aligned_cols=60 Identities=18% Similarity=0.277 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHH-----cCC----ceeEeecchhHHH-----HhhhcccCCCC------CceEEEEEcCCCceeeeEEE
Q psy3431 149 DAQRQATKDAGAI-----AGL----NVMRIVNEPTAAA-----LAYGLDKNLKG------ERNVLIFDLGGGTFDVSILS 208 (549)
Q Consensus 149 ~~qr~~l~~Aa~~-----AGl----~~~~li~Ep~Aaa-----l~y~~~~~~~~------~~~vlv~D~Gggt~dvsv~~ 208 (549)
..++.++.++++. -++ ..+++|+-.+=+. +.|.+.+-... ..++-++||||+++.++..-
T Consensus 103 ~~~~~~il~~~~~~l~~~~~f~~~~~~v~visG~eEg~y~WvtvNyl~g~l~~~~~~~~~~~t~g~lDlGGaStQIaf~~ 182 (434)
T PF01150_consen 103 EEQQEAILDEVRNYLRSSSPFPFRDSWVRVISGEEEGIYGWVTVNYLLGRLDSSGASKSPSNTVGALDLGGASTQIAFEP 182 (434)
T ss_dssp HHHHHHHHHHHHHCHHCHCTSSEEETTCEE--HHHHHHHHHHHHHHHTTTSSSSTEEEEESS-EEEEEE-SSEEEEEEEE
T ss_pred hhhHHHHHHHHHHhhccCCCCccCccceEecCHHHhhHhHHHHHHHHhCccccccccCCCCceEEEEecCCcceeeeecc
Confidence 3455555555443 133 2357776554443 44544432222 57899999999999998554
No 160
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=31.87 E-value=1e+02 Score=25.14 Aligned_cols=45 Identities=18% Similarity=0.324 Sum_probs=31.1
Q ss_pred EEEEEEeCCC-ccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHhhh
Q psy3431 392 IDVTFDLDAN-GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYK 444 (549)
Q Consensus 392 i~v~~~~d~~-g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~~~ 444 (549)
..+.|.+|.+ |.+.|...|..||+... .++.+++-++.+.+.++.
T Consensus 55 ~~l~F~vde~~~~~vVkViD~~T~eVIR--------qIP~Ee~l~l~~~l~e~~ 100 (107)
T PF03646_consen 55 TSLRFSVDEESGRVVVKVIDKETGEVIR--------QIPPEELLDLAKRLRELV 100 (107)
T ss_dssp --EEEEEEEETTEEEEEEEETTT-SEEE--------EE-HHHHHHHHHHHHHHH
T ss_pred CceEEEEecCCCcEEEEEEECCCCcEEE--------eCCcHHHHHHHHHHHHHh
Confidence 5688888876 78999999999987643 256788777777766643
No 161
>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.
Probab=31.71 E-value=2.7e+02 Score=22.25 Aligned_cols=50 Identities=20% Similarity=0.307 Sum_probs=38.6
Q ss_pred cChhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3431 478 LTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAG 531 (549)
Q Consensus 478 ~~~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~ 531 (549)
+-...++.+...|.+-.+-+.. ..+.++.++..+......+...+++.+|
T Consensus 55 fv~~~~~~~~~~L~~~~~~~~~----~i~~l~~~~~~l~~~l~~~~~~l~~~~~ 104 (106)
T PF01920_consen 55 FVKQDKEEAIEELEERIEKLEK----EIKKLEKQLKYLEKKLKELKKKLYELFG 104 (106)
T ss_dssp EEEEEHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHCCCS
T ss_pred HHHhhHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3445677788888877777765 6678888888888888888888888774
No 162
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=31.66 E-value=2.9e+02 Score=22.64 Aligned_cols=47 Identities=15% Similarity=0.190 Sum_probs=34.3
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Q psy3431 480 ESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGA 530 (549)
Q Consensus 480 ~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e~~ 530 (549)
+.+++.+...|++-.+.++. ..+.++++++.|++.+..+...+.+..
T Consensus 62 ~~~~~e~~~~l~~r~e~ie~----~i~~lek~~~~l~~~l~e~q~~l~~~~ 108 (110)
T TIGR02338 62 KTDKEEAIQELKEKKETLEL----RVKTLQRQEERLREQLKELQEKIQEAL 108 (110)
T ss_pred eecHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45566777777777777754 667788888888888888887777654
No 163
>PRK10972 Z-ring-associated protein; Provisional
Probab=31.21 E-value=3e+02 Score=22.71 Aligned_cols=68 Identities=10% Similarity=0.151 Sum_probs=50.3
Q ss_pred HHHHhhhHHHHHHHHHHHhhhccCccChhHHHHHHHHHHHHHHHhhcC-C-cCCHHHHHHHHHHHHHHHHHHHHH
Q psy3431 453 RISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNN-T-LADKEEYQDKLQQLQKSCMPLMSK 525 (549)
Q Consensus 453 ~~~a~N~LE~~iy~~r~~l~~~~~~~~~~e~~~i~~~l~~~~~Wl~~~-~-~a~~~~~~~kl~~L~~~~~~i~~r 525 (549)
..+|-+.|+.-+-++|+. ..+...||-.+..+|+=.-++|... . .....+++.|+..|.+.++.....
T Consensus 27 L~~AA~~Ld~km~~ir~~-----~kv~~~EriavmaALNl~~ELl~~k~~~~~~~~~~~~rI~~L~~~ld~AL~~ 96 (109)
T PRK10972 27 LNQAAEDLNQRLQDLKER-----TRVTNTEQLVFIAALNICYELAQEKAKTRDYAANMEQRIRMLQQTIEQALLE 96 (109)
T ss_pred HHHHHHHHHHHHHHHHHh-----cCCCcHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Confidence 344555566655566654 3466788889999999999999853 2 346688999999999999988764
No 164
>PHA02557 22 prohead core protein; Provisional
Probab=30.93 E-value=4.5e+02 Score=25.41 Aligned_cols=85 Identities=19% Similarity=0.273 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHH-HHHHHHhhhcc-CccChhHHHHHHHHHHHHHHHhhcCCcCCH
Q psy3431 428 LSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYV-FNVKQALDDAG-NKLTESEKSRCREECDATLKWLDNNTLADK 505 (549)
Q Consensus 428 ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~i-y~~r~~l~~~~-~~~~~~e~~~i~~~l~~~~~Wl~~~~~a~~ 505 (549)
.+.+.+.-.-.-..++.+..++.....+..+.|+.++ +..|+.+-..- .-+++.+++++...+.-+.= .
T Consensus 135 vpee~vdvV~em~~~L~E~e~~~~~l~~en~~l~e~i~~~~r~~i~~e~t~gLtdsQkeKv~~L~Egvef---------~ 205 (271)
T PHA02557 135 VPEEKVDVVAEMEEELDEMEEELNELFEENVALEEYINEVKREVILSEVTKDLTESQKEKVASLAEGLEF---------S 205 (271)
T ss_pred CcHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhHHHHHHHHHHHhccch---------h
Q ss_pred HHHHHHHHHHHHHHHH
Q psy3431 506 EEYQDKLQQLQKSCMP 521 (549)
Q Consensus 506 ~~~~~kl~~L~~~~~~ 521 (549)
+.|..||..|...+.+
T Consensus 206 e~F~~kl~~i~E~v~~ 221 (271)
T PHA02557 206 ETFSKKLTAIVEMVFK 221 (271)
T ss_pred hHHHHHHHHHHHHHHh
No 165
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=30.90 E-value=2.4e+02 Score=22.14 Aligned_cols=34 Identities=21% Similarity=0.323 Sum_probs=25.9
Q ss_pred CccChhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHH
Q psy3431 476 NKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 517 (549)
Q Consensus 476 ~~~~~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~ 517 (549)
..+++++|..+.+.+..+..-+.. ++++|+.|+.
T Consensus 31 ~eLs~e~R~~lE~E~~~l~~~l~~--------~E~eL~~Lrk 64 (85)
T PF15188_consen 31 RELSPEARRSLEKELNELKEKLEN--------NEKELKLLRK 64 (85)
T ss_pred cCCChHHHHHHHHHHHHHHHHhhc--------cHHHHHHHHH
Confidence 568899999999888888877764 3566776665
No 166
>COG4012 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.85 E-value=96 Score=29.84 Aligned_cols=50 Identities=24% Similarity=0.357 Sum_probs=34.2
Q ss_pred eEEEEEcCCCceeeeEEEeeCCcEEE----------------------EEEecCCCCCCcchHHHHHHHHHHH
Q psy3431 191 NVLIFDLGGGTFDVSILSIDEGALFE----------------------VRSTAGDTHLGGEDFDNRLVSHLAE 241 (549)
Q Consensus 191 ~vlv~D~Gggt~dvsv~~~~~~~~~~----------------------v~~~~~d~~lGG~~iD~~l~~~l~~ 241 (549)
++|++|+|.||.|+-.+.-.....+. -+.-.| ...||--...++.+|+..
T Consensus 2 kila~DvG~GTqDi~~~d~~~EnSl~mVmPspt~~~A~R~R~~~~~g~~l~l~G-~~MGGGp~travrrhlk~ 73 (342)
T COG4012 2 KILAIDVGVGTQDIVAYDGDPENSLRMVMPSPTSTLAQRLRFMLREGPYLALIG-VPMGGGPTTRAVRRHLKK 73 (342)
T ss_pred ceEEEEecCCceeEEEecCCcccceeEeecCchHHHHHHHHHHhccCCcEEEEe-eecCCChhhHHHHHHHhc
Confidence 57999999999999887632110000 122233 678899999999988875
No 167
>PTZ00107 hexokinase; Provisional
Probab=30.48 E-value=1.6e+02 Score=31.31 Aligned_cols=28 Identities=21% Similarity=0.374 Sum_probs=23.5
Q ss_pred CCceEEEEEcCCCceeeeEEEeeCCcEE
Q psy3431 188 GERNVLIFDLGGGTFDVSILSIDEGALF 215 (549)
Q Consensus 188 ~~~~vlv~D~Gggt~dvsv~~~~~~~~~ 215 (549)
+...+|.+|+||.++-|.++++.++..+
T Consensus 72 E~G~fLAlDlGGTN~RV~~V~L~g~~~~ 99 (464)
T PTZ00107 72 EKGVYYAIDFGGTNFRAVRVSLRGGGKM 99 (464)
T ss_pred ccceEEEEecCCceEEEEEEEeCCCCce
Confidence 5677999999999999999999865343
No 168
>KOG2196|consensus
Probab=30.25 E-value=4.5e+02 Score=24.99 Aligned_cols=38 Identities=21% Similarity=0.346 Sum_probs=28.6
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHH
Q psy3431 480 ESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMP 521 (549)
Q Consensus 480 ~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~ 521 (549)
..+..++.........||+++ ...++++++.|+++.+.
T Consensus 214 ~~qi~Kilnah~~sLqwl~d~----st~~e~k~d~i~K~~~~ 251 (254)
T KOG2196|consen 214 IIQIEKILNAHMDSLQWLDDN----STQLEKKLDKIKKLKDD 251 (254)
T ss_pred hHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHHhhhcc
Confidence 445677888888888999984 45678888888877653
No 169
>KOG0678|consensus
Probab=29.50 E-value=3.9e+02 Score=26.80 Aligned_cols=99 Identities=18% Similarity=0.171 Sum_probs=53.6
Q ss_pred ceEEEEecCCCCHHHHHHHHHHHHHcCCceeEeec---chhHHHHhhhcccCCCCCceEEEEEcCCCceeeeEEEeeCCc
Q psy3431 137 RDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVN---EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGA 213 (549)
Q Consensus 137 ~~~vitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~---Ep~Aaal~y~~~~~~~~~~~vlv~D~Gggt~dvsv~~~~~~~ 213 (549)
....+|-|.-=.++.|.-+.+..-.. +++..|.- .-.|.|..|...+-.+..-+=+|+|-|-|-+-|-.+. .|
T Consensus 107 h~fLlteppln~penreytaeImfEs-fnvpglyiAVqavLALaaswts~~v~er~ltG~VidsGdgvThvipva--Eg- 182 (415)
T KOG0678|consen 107 HYFLLTEPPLNQPENREYTAEIMFES-FNVPGLYIAVQAVLALAASWTSRQVGERFLTGIVIDSGDGVTHVIPVA--EG- 182 (415)
T ss_pred ceEEecCCCCCCchhhHHHHHhhhhh-ccCchHHHHHHHHHHHHHHHHHhhhhhheeeeEEEecCCCeeEEEEee--cc-
Confidence 34678888777777777665543322 33332211 1112222232221111233447899999988776654 23
Q ss_pred EEEEEEecCCCCCCcchHHHHHHHHHH
Q psy3431 214 LFEVRSTAGDTHLGGEDFDNRLVSHLA 240 (549)
Q Consensus 214 ~~~v~~~~~d~~lGG~~iD~~l~~~l~ 240 (549)
+-+.+.-....+.|+++..-+...+.
T Consensus 183 -yVigScik~iPiagrdiT~fiQ~llR 208 (415)
T KOG0678|consen 183 -YVIGSCIKHIPIAGRDITYFIQQLLR 208 (415)
T ss_pred -eEEeeeeccccccCCchhHHHHHHhh
Confidence 33333344578999999876655553
No 170
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=29.49 E-value=7e+02 Score=28.23 Aligned_cols=10 Identities=20% Similarity=0.268 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q psy3431 486 CREECDATLK 495 (549)
Q Consensus 486 i~~~l~~~~~ 495 (549)
+.+.++.+..
T Consensus 612 L~~R~~~vl~ 621 (717)
T PF10168_consen 612 LMKRVDRVLQ 621 (717)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 171
>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]
Probab=29.24 E-value=57 Score=31.39 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=18.7
Q ss_pred CEEEEEcCccceEEEEEECCeE
Q psy3431 2 PAIGIDLGTTYSCVAVFQQGKV 23 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~~~g~~ 23 (549)
+.+.||.|+|++..|++.++..
T Consensus 1 ~~L~iDiGNT~~~~a~~~~~~~ 22 (251)
T COG1521 1 MLLLIDIGNTRIVFALYEGGKV 22 (251)
T ss_pred CeEEEEeCCCeEEEEEecCCeE
Confidence 4689999999999999986654
No 172
>PF00815 Histidinol_dh: Histidinol dehydrogenase; InterPro: IPR012131 Histidinol dehydrogenase (HDH) catalyzes the terminal step in the biosynthesis of histidine in bacteria, fungi, and plants, the four-electron oxidation of L-histidinol to histidine. In 4-electron dehydrogenases, a single active site catalyses 2 separate oxidation steps: oxidation of the substrate alcohol to an intermediate aldehyde; and oxidation of the aldehyde to the product acid, in this case His []. The reaction proceeds via a tightly- or covalently-bound inter-mediate, and requires the presence of 2 NAD molecules []. By contrast with most dehydrogenases, the substrate is bound before the NAD coenzyme []. A Cys residue has been implicated in the catalytic mechanism of the second oxidative step []. In bacteria HDH is a single chain polypeptide; in fungi it is the C-terminal domain of a multifunctional enzyme which catalyzes three different steps of histidine biosynthesis; and in plants it is expressed as nuclear encoded protein precursor which is exported to the chloroplast [].; GO: 0004399 histidinol dehydrogenase activity, 0008270 zinc ion binding, 0051287 NAD binding, 0000105 histidine biosynthetic process, 0055114 oxidation-reduction process; PDB: 1KAE_B 1K75_A 1KAH_A 1KAR_B.
Probab=29.19 E-value=94 Score=32.22 Aligned_cols=74 Identities=26% Similarity=0.347 Sum_probs=37.7
Q ss_pred CcceEEEEecCCCCHHHHHHHHHHHHHcCCceeEeecchhHH-HHhhhcccCCC-----CCc------------eEEEEE
Q psy3431 135 SVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA-ALAYGLDKNLK-----GER------------NVLIFD 196 (549)
Q Consensus 135 ~~~~~vitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aa-al~y~~~~~~~-----~~~------------~vlv~D 196 (549)
-+.++|++.|+.-+-.---.+.-||.++|.+.+.-+--..|. |++||...-.+ .+. ..+-+|
T Consensus 136 GV~~Iv~~TPp~~~G~i~p~vL~Aa~~~Gv~evy~vGGaqAIAAlAyGTeti~~VDkIvGPGN~yV~~AK~~v~g~V~ID 215 (412)
T PF00815_consen 136 GVKEIVVCTPPPKDGKINPAVLAAAHLAGVDEVYKVGGAQAIAALAYGTETIPKVDKIVGPGNAYVTAAKRLVFGDVGID 215 (412)
T ss_dssp T-SEEEEEE-SS------HHHHHHHHHTT-SEEEE--HHHHHHHHHH--SSS---SEEE---SHHHHHHHHHHHHS-EES
T ss_pred CCCeEEEEcCCCccCCCCHHHHHHHHHcCCCEEEecccHHHHHHHHcCCCCCCceeEEECCCcHHHHHHHHHhcCCcccC
Confidence 467899999988755566789999999999999888888874 68998653211 000 123467
Q ss_pred cCCCceeeeEEE
Q psy3431 197 LGGGTFDVSILS 208 (549)
Q Consensus 197 ~Gggt~dvsv~~ 208 (549)
+=+|-+.+.|+.
T Consensus 216 ~~AGPSEv~ViA 227 (412)
T PF00815_consen 216 MIAGPSEVLVIA 227 (412)
T ss_dssp ------EEEEEE
T ss_pred CCCCCCceEEEE
Confidence 667777766665
No 173
>PLN00078 photosystem I reaction center subunit N (PsaN); Provisional
Probab=28.90 E-value=2.6e+02 Score=22.58 Aligned_cols=14 Identities=43% Similarity=0.802 Sum_probs=8.7
Q ss_pred HHHHHHHHHHhhcC
Q psy3431 487 REECDATLKWLDNN 500 (549)
Q Consensus 487 ~~~l~~~~~Wl~~~ 500 (549)
.+.-..+.+||+.|
T Consensus 108 sEsEK~IleWL~KN 121 (122)
T PLN00078 108 TESEKGILEWLDKN 121 (122)
T ss_pred CHHHHHHHHHHHcc
Confidence 33334667899865
No 174
>PRK13324 pantothenate kinase; Reviewed
Probab=28.60 E-value=67 Score=31.11 Aligned_cols=20 Identities=20% Similarity=0.473 Sum_probs=17.7
Q ss_pred EEEEEcCccceEEEEEECCe
Q psy3431 3 AIGIDLGTTYSCVAVFQQGK 22 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g~ 22 (549)
++.||.|+|+++.+++.+++
T Consensus 2 iL~iDiGNT~ik~gl~~~~~ 21 (258)
T PRK13324 2 LLVMDMGNSHIHIGVFDGDR 21 (258)
T ss_pred EEEEEeCCCceEEEEEECCE
Confidence 78999999999999998554
No 175
>TIGR03545 conserved hypothetical protein TIGR03545. This model represents a relatively rare but broadly distributed uncharacterized protein family, distributed in 1-2 percent of bacterial genomes, all of which have outer membranes. In many of these genomes, it is part of a two-gene pair.
Probab=28.34 E-value=3.6e+02 Score=29.37 Aligned_cols=101 Identities=16% Similarity=0.212 Sum_probs=59.3
Q ss_pred CHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhccCccChhHHHHHHHHHHHHHHHhhcC--------
Q psy3431 429 SKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNN-------- 500 (549)
Q Consensus 429 s~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~~~e~~~i~~~l~~~~~Wl~~~-------- 500 (549)
|.++.+++...++++.+.=..+......++++++|--++...-.. ..=++.+.....+.++++..=+...
T Consensus 162 T~~~~~~~~~~~k~~~~~w~~~~~~Lp~~~~~~~yk~~v~~i~~~--~ik~p~~i~~~~~e~d~lk~e~~~~~~~i~~~~ 239 (555)
T TIGR03545 162 TVETAEEIEKSLKAMQQKWKKRKKDLPNKQDLEEYKKRLEAIKKK--DIKNPLELQKIKEEFDKLKKEGKADKQKIKSAK 239 (555)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHhc--cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666665543333333333477888887666654432 2334555555555555444444321
Q ss_pred -C-cCCHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q psy3431 501 -T-LADKEEYQDKLQQLQKSCMPLMSKMHGGAG 531 (549)
Q Consensus 501 -~-~a~~~~~~~kl~~L~~~~~~i~~r~~e~~~ 531 (549)
+ ....+.++..+++|++.-+.=..|+.+.++
T Consensus 240 ~~l~~~~~~~~~~~~~lk~ap~~D~~~L~~~~~ 272 (555)
T TIGR03545 240 NDLQNDKKQLKADLAELKKAPQNDLKRLENKYA 272 (555)
T ss_pred HHHHHhHHHHHHHHHHHHhccHhHHHHHHHHhC
Confidence 1 246677788888888888777788888775
No 176
>PLN02914 hexokinase
Probab=28.16 E-value=1.5e+02 Score=31.74 Aligned_cols=25 Identities=24% Similarity=0.369 Sum_probs=22.2
Q ss_pred CCceEEEEEcCCCceeeeEEEeeCC
Q psy3431 188 GERNVLIFDLGGGTFDVSILSIDEG 212 (549)
Q Consensus 188 ~~~~vlv~D~Gggt~dvsv~~~~~~ 212 (549)
+...+|.+|+||.+|-|..+++.+.
T Consensus 93 E~G~fLAlDlGGTNfRV~~V~L~g~ 117 (490)
T PLN02914 93 EKGLFYALDLGGTNFRVLRVQLGGK 117 (490)
T ss_pred eeeEEEEEecCCceEEEEEEEecCC
Confidence 5677999999999999999999763
No 177
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=28.06 E-value=6.2e+02 Score=25.29 Aligned_cols=83 Identities=17% Similarity=0.201 Sum_probs=47.0
Q ss_pred CCHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHhhhccCccChhHHHHHHHHHHHHHHHhhcCCcCCHH-
Q psy3431 428 LSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNTLADKE- 506 (549)
Q Consensus 428 ls~eei~~~~~~~~~~~~~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~~~e~~~i~~~l~~~~~Wl~~~~~a~~~- 506 (549)
.+++++.++++++.+... +.........+++.-+-+++..++. ..+++..+...+.+++.-++.....+..
T Consensus 201 ~d~~eL~~lk~~l~~~~~---ei~~~~~~l~e~~~~l~~l~~~I~~-----~~~~k~e~~~~I~~ae~~~~~~r~~t~~E 272 (312)
T smart00787 201 CDPTELDRAKEKLKKLLQ---EIMIKVKKLEELEEELQELESKIED-----LTNKKSELNTEIAEAEKKLEQCRGFTFKE 272 (312)
T ss_pred CCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 456777777755554432 2222333333444444445555542 3566778888888888888766444444
Q ss_pred --HHHHHHHHHHHH
Q psy3431 507 --EYQDKLQQLQKS 518 (549)
Q Consensus 507 --~~~~kl~~L~~~ 518 (549)
.++.+++.|++.
T Consensus 273 i~~Lk~~~~~Le~l 286 (312)
T smart00787 273 IEKLKEQLKLLQSL 286 (312)
T ss_pred HHHHHHHHHHHHHH
Confidence 455555555543
No 178
>PF11593 Med3: Mediator complex subunit 3 fungal; InterPro: IPR020998 The Mediator complex is a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene-specific regulatory proteins to the basal RNA polymerase II transcription machinery. The Mediator complex, having a compact conformation in its free form, is recruited to promoters by direct interactions with regulatory proteins and serves for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. On recruitment the Mediator complex unfolds to an extended conformation and partially surrounds RNA polymerase II, specifically interacting with the unphosphorylated form of the C-terminal domain (CTD) of RNA polymerase II. The Mediator complex dissociates from the RNA polymerase II holoenzyme and stays at the promoter when transcriptional elongation begins. The Mediator complex is composed of at least 31 subunits: MED1, MED4, MED6, MED7, MED8, MED9, MED10, MED11, MED12, MED13, MED13L, MED14, MED15, MED16, MED17, MED18, MED19, MED20, MED21, MED22, MED23, MED24, MED25, MED26, MED27, MED29, MED30, MED31, CCNC, CDK8 and CDC2L6/CDK11. The subunits form at least three structurally distinct submodules. The head and the middle modules interact directly with RNA polymerase II, whereas the elongated tail module interacts with gene-specific regulatory proteins. Mediator containing the CDK8 module is less active than Mediator lacking this module in supporting transcriptional activation. The head module contains: MED6, MED8, MED11, SRB4/MED17, SRB5/MED18, ROX3/MED19, SRB2/MED20 and SRB6/MED22. The middle module contains: MED1, MED4, NUT1/MED5, MED7, CSE2/MED9, NUT2/MED10, SRB7/MED21 and SOH1/MED31. CSE2/MED9 interacts directly with MED4. The tail module contains: MED2, PGD1/MED3, RGR1/MED14, GAL11/MED15 and SIN4/MED16. The CDK8 module contains: MED12, MED13, CCNC and CDK8. Individual preparations of the Mediator complex lacking one or more distinct subunits have been variously termed ARC, CRSP, DRIP, PC2, SMCC and TRAP. This entry represents the subunit Med3, which is a physical target for Cyc8-Tup1, a yeast transcriptional co-repressor []. ; GO: 0001104 RNA polymerase II transcription cofactor activity, 0006357 regulation of transcription from RNA polymerase II promoter, 0016592 mediator complex
Probab=27.85 E-value=60 Score=32.65 Aligned_cols=38 Identities=24% Similarity=0.304 Sum_probs=15.9
Q ss_pred HHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHHhc
Q psy3431 490 CDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHG 528 (549)
Q Consensus 490 l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~~e 528 (549)
|+++++||.+++. +++.+.+++.+-++.+-|+--++.|
T Consensus 10 LeeLe~kLa~~d~-~Kd~V~~~I~ea~~sILPlRL~FNe 47 (379)
T PF11593_consen 10 LEELEEKLASNDN-SKDSVMDKISEAQDSILPLRLQFNE 47 (379)
T ss_pred HHHHHHHHhcCCc-hHHHHHHHHHHHHhccccHHHHHHH
Confidence 3444444443322 4444444444444444444433333
No 179
>KOG2517|consensus
Probab=27.79 E-value=51 Score=35.13 Aligned_cols=17 Identities=47% Similarity=0.757 Sum_probs=15.8
Q ss_pred EEEEEcCccceEEEEEE
Q psy3431 3 AIGIDLGTTYSCVAVFQ 19 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~ 19 (549)
++|||.|||.+++++++
T Consensus 8 ~~gIDvGTtSaR~~v~~ 24 (516)
T KOG2517|consen 8 VLGIDVGTTSARALVFN 24 (516)
T ss_pred EEEEEcCCCceEEEEEe
Confidence 79999999999999875
No 180
>KOG1029|consensus
Probab=27.78 E-value=3.3e+02 Score=30.55 Aligned_cols=44 Identities=14% Similarity=0.184 Sum_probs=26.8
Q ss_pred hhHHHHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHH
Q psy3431 480 ESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLM 523 (549)
Q Consensus 480 ~~e~~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~ 523 (549)
-++.+.++..++++.+=++....+-.+.|+..++.|+..-..+.
T Consensus 562 ~~eidi~n~qlkelk~~~~~q~lake~~yk~e~d~~ke~et~~l 605 (1118)
T KOG1029|consen 562 LNEIDIFNNQLKELKEDVNSQQLAKEELYKNERDKLKEAETKAL 605 (1118)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667777777776665545566677766666664433333
No 181
>PF02782 FGGY_C: FGGY family of carbohydrate kinases, C-terminal domain; InterPro: IPR018485 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related. These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the C-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the N-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 4E1J_B 2W40_C 2W41_A 2UYT_A 2CGK_B 2CGL_A 2CGJ_A 3GBT_A 3LL3_B 3HZ6_A ....
Probab=27.76 E-value=38 Score=30.91 Aligned_cols=32 Identities=31% Similarity=0.415 Sum_probs=23.8
Q ss_pred HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHH
Q psy3431 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAI 297 (549)
Q Consensus 264 i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~ 297 (549)
+.+++.+.| +.++....+ .|+.|+|||+.|+.
T Consensus 165 ~~q~~Advl-~~~V~~~~~-~e~~a~GaA~~A~~ 196 (198)
T PF02782_consen 165 WMQILADVL-GRPVVRPEV-EEASALGAALLAAV 196 (198)
T ss_dssp HHHHHHHHH-TSEEEEESS-STHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCceEeCCC-CchHHHHHHHHHHh
Confidence 566777888 566654444 89999999999874
No 182
>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type. This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).
Probab=27.56 E-value=78 Score=31.03 Aligned_cols=26 Identities=31% Similarity=0.425 Sum_probs=0.0
Q ss_pred CEEEEEcCccceEEEEE-ECCeEEEEe
Q psy3431 2 PAIGIDLGTTYSCVAVF-QQGKVEIIA 27 (549)
Q Consensus 2 ~vvGID~Gtt~s~va~~-~~g~~~ii~ 27 (549)
+.+|||.|+|.+++++. .+++.....
T Consensus 1 ~~iGiDiGgT~~Kiv~~~~~~~~~f~~ 27 (279)
T TIGR00555 1 SRIGIDIGGTLIKVVYEEPKGRRKFKT 27 (279)
T ss_pred CeEEEEeCcceEEEEEEcCCCcEEEEE
No 183
>PLN02596 hexokinase-like
Probab=27.16 E-value=1.8e+02 Score=31.17 Aligned_cols=25 Identities=12% Similarity=0.074 Sum_probs=22.3
Q ss_pred CCceEEEEEcCCCceeeeEEEeeCC
Q psy3431 188 GERNVLIFDLGGGTFDVSILSIDEG 212 (549)
Q Consensus 188 ~~~~vlv~D~Gggt~dvsv~~~~~~ 212 (549)
+...+|.+|+||.+|-|..+++.++
T Consensus 94 E~G~yLAlDlGGTNfRV~~V~L~g~ 118 (490)
T PLN02596 94 EKGLYYGLNLRGSNFLLLRARLGGK 118 (490)
T ss_pred cceEEEEEeeCCceEEEEEEEEcCC
Confidence 5677899999999999999999764
No 184
>COG2069 CdhD CO dehydrogenase/acetyl-CoA synthase delta subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=27.14 E-value=1.3e+02 Score=29.44 Aligned_cols=47 Identities=30% Similarity=0.396 Sum_probs=34.9
Q ss_pred HHcCCceeEeecchhHHHHhhhcccCCC----------CCceEEEEEcCCCceeeeE
Q psy3431 160 AIAGLNVMRIVNEPTAAALAYGLDKNLK----------GERNVLIFDLGGGTFDVSI 206 (549)
Q Consensus 160 ~~AGl~~~~li~Ep~Aaal~y~~~~~~~----------~~~~vlv~D~Gggt~dvsv 206 (549)
-..|++.-+++-+||-+||.||++.... +++..|-+=+-.||+.+.-
T Consensus 273 lk~gl~r~~IVMDPTTcALGYGieyai~~m~RiRlaaLkGD~~l~mPmSSGtTNAwg 329 (403)
T COG2069 273 LKRGLPRDRIVMDPTTCALGYGIEYAITNMERIRLAALKGDEDLQMPMSSGTTNAWG 329 (403)
T ss_pred HHccCChhheeeccchhhhccceeeehhHHHHHHHHhccCcccccccccCCCcchhh
Confidence 3457999999999999999999875432 4566666777777776543
No 185
>PRK13329 pantothenate kinase; Reviewed
Probab=26.24 E-value=4.2e+02 Score=25.42 Aligned_cols=119 Identities=17% Similarity=0.183 Sum_probs=0.0
Q ss_pred cCCCceEEEEEcC----ceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHHHcCCceeEe
Q psy3431 94 DRSKPKIQVEFKG----ERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRI 169 (549)
Q Consensus 94 ~~~~~~~~v~~~~----~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~~AGl~~~~l 169 (549)
+-|+..+++.... .............-+..+.+..-..+.....-++-+|+ .+...+.+.++++..+.++..+
T Consensus 7 D~GNTriKw~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~vssV~---~~~~~~~l~~~l~~~~~~~~~~ 83 (249)
T PRK13329 7 DVGNTRLKWGLYDAAQPGAALLAHGAEFLAEIDRLAEGAWAGLPAPARVLGCNVA---GDAVARRVAEQLELWDVAPRWV 83 (249)
T ss_pred EcCcchheeeEecccccCCcccccchhhHHHHHHHhhhhHhhCCCCCeEEEEecC---cHHHHHHHHHHHHHhCCceEEE
Q ss_pred ecchhHHHHhhhcccCCC---------------CCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCc
Q psy3431 170 VNEPTAAALAYGLDKNLK---------------GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228 (549)
Q Consensus 170 i~Ep~Aaal~y~~~~~~~---------------~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG 228 (549)
-++.....+...+..+.. .++.++|+|+|--+ .+.++...+ .++||
T Consensus 84 ~~~~~~~gi~~~Y~~P~~LG~DR~~a~vaA~~~~~~~~lViD~GTA~------------TiD~v~~~g-~~lGG 144 (249)
T PRK13329 84 VASAAECGVRNGYDHPARLGADRWVALIGARHGPARPCLVVMVGTAV------------TVDALDADG-EFLGG 144 (249)
T ss_pred ecCccccCCeecCCChHhccHHHHHHHHHHHHhcCCCEEEEECCCce------------eEEEEcCCC-cEEEE
No 186
>TIGR01319 glmL_fam conserved hypothetical protein. This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).
Probab=26.06 E-value=47 Score=34.82 Aligned_cols=19 Identities=32% Similarity=0.622 Sum_probs=15.9
Q ss_pred ceEEEEEcCCCceeeeEEE
Q psy3431 190 RNVLIFDLGGGTFDVSILS 208 (549)
Q Consensus 190 ~~vlv~D~Gggt~dvsv~~ 208 (549)
..+|++|+||-|||+-.+.
T Consensus 249 g~ll~VDIGGATTDvhSv~ 267 (463)
T TIGR01319 249 GDFILIDIGGATTDVHSAA 267 (463)
T ss_pred CCEEEEEcCccccchhhcc
Confidence 3599999999999986654
No 187
>TIGR02627 rhamnulo_kin rhamnulokinase. This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.
Probab=25.92 E-value=34 Score=36.18 Aligned_cols=16 Identities=25% Similarity=0.476 Sum_probs=14.3
Q ss_pred EEEEcCccceEEEEEE
Q psy3431 4 IGIDLGTTYSCVAVFQ 19 (549)
Q Consensus 4 vGID~Gtt~s~va~~~ 19 (549)
+|||+|||+++++++.
T Consensus 1 ~aiD~Gtt~~k~~l~~ 16 (454)
T TIGR02627 1 VAVDLGASSGRVMLAS 16 (454)
T ss_pred CcEeccCCchheEEEE
Confidence 5899999999999874
No 188
>KOG0994|consensus
Probab=25.47 E-value=5.6e+02 Score=30.37 Aligned_cols=18 Identities=17% Similarity=0.326 Sum_probs=11.3
Q ss_pred HhhhHHHHHHHHHHHhhh
Q psy3431 456 ARNNLEAYVFNVKQALDD 473 (549)
Q Consensus 456 a~N~LE~~iy~~r~~l~~ 473 (549)
...+|+..|.++|++|..
T Consensus 1469 s~~el~~Li~~v~~Flt~ 1486 (1758)
T KOG0994|consen 1469 SNRELRNLIQQVRDFLTQ 1486 (1758)
T ss_pred HHHHHHHHHHHHHHHhcC
Confidence 444566667777777754
No 189
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=25.31 E-value=7.5e+02 Score=26.06 Aligned_cols=45 Identities=24% Similarity=0.251 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhhhh----hhHHHHHHHHHhhhHHHHHHHHHHHhhhcc
Q psy3431 431 EEIDRMINDAERYKD----EDEKQKERISARNNLEAYVFNVKQALDDAG 475 (549)
Q Consensus 431 eei~~~~~~~~~~~~----~D~~~~~~~~a~N~LE~~iy~~r~~l~~~~ 475 (549)
+++.++++...++.. -++..|+...--|.+++|+..|+.+..+..
T Consensus 281 ~~l~e~i~ea~k~s~~i~~l~ek~r~l~~D~nk~~~~~~~mk~K~~~~~ 329 (622)
T COG5185 281 DNLYEKIQEAMKISQKIKTLREKWRALKSDSNKYENYVNAMKQKSQEWP 329 (622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhcc
Confidence 445555555555543 344556666677889999999988876543
No 190
>KOG1029|consensus
Probab=25.04 E-value=4.2e+02 Score=29.72 Aligned_cols=13 Identities=8% Similarity=0.225 Sum_probs=8.2
Q ss_pred EEccCCCCCcccc
Q psy3431 331 LIERNTRIPCKQT 343 (549)
Q Consensus 331 li~~~~~lp~~~~ 343 (549)
++..|.+||..--
T Consensus 260 ma~sGq~lP~tlP 272 (1118)
T KOG1029|consen 260 MAKSGQPLPKTLP 272 (1118)
T ss_pred HHhcCCCCCCCCC
Confidence 5666777776533
No 191
>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition. This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated
Probab=25.03 E-value=1.1e+02 Score=26.16 Aligned_cols=20 Identities=25% Similarity=0.358 Sum_probs=17.2
Q ss_pred EEEEEcCccceEEEEEECCe
Q psy3431 3 AIGIDLGTTYSCVAVFQQGK 22 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g~ 22 (549)
+||||+|-....+++..++.
T Consensus 1 ~vGiDv~k~~~~v~v~~~~~ 20 (144)
T PF01548_consen 1 FVGIDVSKDTHDVCVIDPNG 20 (144)
T ss_pred eEEEEcccCeEEEEEEcCCC
Confidence 68999999999999886655
No 192
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=24.88 E-value=3.3e+02 Score=22.67 Aligned_cols=69 Identities=20% Similarity=0.209 Sum_probs=41.2
Q ss_pred EeecCCCceEEEEEcCceeeeCHHHHHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHHHcCC
Q psy3431 91 VVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGL 164 (549)
Q Consensus 91 ~~~~~~~~~~~v~~~~~~~~~~~~~v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~~AGl 164 (549)
++...|+.++.|-...... .....+...|.+.--..-+....-+.|+||+.=+-.....+.+..+..|.
T Consensus 46 ~v~~sGnsTiRv~~~~~~~-----~~~~~v~~~l~~lG~~~E~~~~~~lav~VP~~~~~~~i~~~L~~~~e~g~ 114 (117)
T PF14085_consen 46 VVESSGNSTIRVIFDDPGP-----DDIEAVREELEALGCTVEGFSERMLAVDVPPSVDFDAIKDYLDRGEEQGW 114 (117)
T ss_pred EEecCCCEEEEEEEcCCcc-----hhHHHHHHHHHHcCCeEEccCCCEEEEEECCCCCHHHHHHHHHhhhhcCc
Confidence 3456777788776544211 23333333333221111112346789999999999999998888877763
No 193
>PF03484 B5: tRNA synthetase B5 domain; InterPro: IPR005147 Domain B5 is found in phenylalanine-tRNA synthetase beta subunits. This domain has been shown to bind DNA through a winged helix-turn-helix motif []. Phenylalanine-tRNA synthetase may influence common cellular processes via DNA binding, in addition to its aminoacylation function.; GO: 0000287 magnesium ion binding, 0003723 RNA binding, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation; PDB: 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B 3PCO_D 2CXI_C 1JJC_B 1EIY_B ....
Probab=24.44 E-value=2.2e+02 Score=21.08 Aligned_cols=58 Identities=16% Similarity=0.169 Sum_probs=34.7
Q ss_pred HHHhHHhhCCCCCChHHHhhcccCCeEEee-cCCCceEEEEEcCceeeeCHHHHHHHHHH
Q psy3431 64 VFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLT 122 (549)
Q Consensus 64 ~~~~k~llg~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~~v~~~~L~ 122 (549)
...+++++|..++...+.+.+.++.|.+.. .++...+.+..-. .....+++++..+++
T Consensus 8 ~~~i~~~lG~~i~~~~i~~~L~~lg~~~~~~~~~~~~v~vP~~R-~Di~~~~DliEEiaR 66 (70)
T PF03484_consen 8 LDKINKLLGIDISPEEIIKILKRLGFKVEKIDGDTLEVTVPSYR-FDIEHEEDLIEEIAR 66 (70)
T ss_dssp HHHHHHHHTS---HHHHHHHHHHTT-EEEE-CTTEEEEEEETTS-TT-SSHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHCCCEEEECCCCEEEEEcCCCc-CCcCcccHHHHHHHH
Confidence 456789999999999999999999998876 4444344443221 234566666665554
No 194
>TIGR00228 ruvC crossover junction endodeoxyribonuclease RuvC. Endonuclease that resolves Holliday junction intermediates in genetic recombination. The active form of the protein is a dimer. Structure studies reveals that the catalytic center, comprised of four acidic residues, lies at the bottom of a cleft that fits a DNA duplex. The model hits a single Synechocystis PCC6803 protein at a score of 30, below the trusted cutoff, that appears orthologous and may act as authentic RuvC.
Probab=24.15 E-value=4.6e+02 Score=23.20 Aligned_cols=45 Identities=13% Similarity=0.072 Sum_probs=28.7
Q ss_pred EEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHH
Q psy3431 192 VLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSH 238 (549)
Q Consensus 192 vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~ 238 (549)
+|-+|-|-..|-..+++..++ .+..+.++.- ..-...+.++|...
T Consensus 1 ILGIDPGl~~tG~gvi~~~~~-~~~~v~~G~I-~t~~~~~~~RL~~I 45 (156)
T TIGR00228 1 ILGIDPGSRVTGYGVIRQVGR-QLSYLGSGCI-RTKVDDLPSRLKLI 45 (156)
T ss_pred CEeECcccccccEEEEEecCC-eEEEEEeeEE-ECCCCCHHHHHHHH
Confidence 356788888888888887766 6666655442 22235677766543
No 195
>PRK00976 hypothetical protein; Provisional
Probab=23.64 E-value=93 Score=31.15 Aligned_cols=22 Identities=45% Similarity=0.558 Sum_probs=18.8
Q ss_pred CCEEEEEcCccceEEEEEECCe
Q psy3431 1 MPAIGIDLGTTYSCVAVFQQGK 22 (549)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~g~ 22 (549)
|+.||||=|||-++.|...++.
T Consensus 1 ~~~~g~dhgt~~~~~~~~~~~~ 22 (326)
T PRK00976 1 MMFVGIDHGTTGIRFAIIEGGK 22 (326)
T ss_pred CeEEeecCCCccEEEEEEcCCc
Confidence 7899999999999999884444
No 196
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=23.32 E-value=88 Score=26.36 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=27.9
Q ss_pred CCCCHHHHHHHHHHHHHcCCceeEeecchhH
Q psy3431 145 AYFNDAQRQATKDAGAIAGLNVMRIVNEPTA 175 (549)
Q Consensus 145 a~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~A 175 (549)
..++.-||+.+.-|...+.=..+-+++||+|
T Consensus 107 ~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 107 SSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp GGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred chhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 7889999999998988888888999999986
No 197
>TIGR00671 baf pantothenate kinase, type III. This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.
Probab=23.30 E-value=87 Score=30.02 Aligned_cols=19 Identities=32% Similarity=0.333 Sum_probs=17.0
Q ss_pred EEEEcCccceEEEEEECCe
Q psy3431 4 IGIDLGTTYSCVAVFQQGK 22 (549)
Q Consensus 4 vGID~Gtt~s~va~~~~g~ 22 (549)
+.||.|+|++++|++.+++
T Consensus 2 L~iDiGNT~i~~g~~~~~~ 20 (243)
T TIGR00671 2 LLIDVGNTRIVFALNSGNK 20 (243)
T ss_pred EEEEECCCcEEEEEEECCE
Confidence 6799999999999998765
No 198
>PF07865 DUF1652: Protein of unknown function (DUF1652); InterPro: IPR012448 The proteins in this entry have not been characterised.
Probab=23.19 E-value=2.9e+02 Score=20.73 Aligned_cols=50 Identities=20% Similarity=0.341 Sum_probs=33.2
Q ss_pred EEEEEEeCCCccEEEEEEecCCCCceeEEEecC--CCCCCHHHHHHHHHHHHh
Q psy3431 392 IDVTFDLDANGILNVTAKDTSSGKSQNITIKND--KGRLSKEEIDRMINDAER 442 (549)
Q Consensus 392 i~v~~~~d~~g~l~v~~~~~~t~~~~~i~i~~~--~~~ls~eei~~~~~~~~~ 442 (549)
....+.++.+|.++|...+..+|... ++++.- ..-.|..+|.+++..++.
T Consensus 15 l~C~ct~~~~~smtvrl~d~~sg~~~-l~vtGI~~~~l~s~rdI~~LI~eLr~ 66 (69)
T PF07865_consen 15 LRCECTIAPDGSMTVRLFDPASGRVE-LTVTGISTSALNSSRDIVRLIAELRA 66 (69)
T ss_pred ceeEEEECCCCcEEEEEecCCCCcEE-EEEcCcCHHHcCCHHHHHHHHHHHHH
Confidence 45778899999999999998888763 222211 122456677777666553
No 199
>COG4020 Uncharacterized protein conserved in archaea [Function unknown]
Probab=23.10 E-value=65 Score=30.68 Aligned_cols=22 Identities=36% Similarity=0.472 Sum_probs=18.5
Q ss_pred CCEEEEEcCccceEEEEEECCe
Q psy3431 1 MPAIGIDLGTTYSCVAVFQQGK 22 (549)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~g~ 22 (549)
|..||||-|||-++++++.+..
T Consensus 3 m~fVGiDHGTsgi~~ai~d~e~ 24 (332)
T COG4020 3 MMFVGIDHGTSGIKFAIYDGEK 24 (332)
T ss_pred eEEEeecCCCcceEEEEEcCCC
Confidence 6789999999999999886443
No 200
>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]
Probab=23.09 E-value=3.1e+02 Score=27.15 Aligned_cols=106 Identities=20% Similarity=0.166 Sum_probs=61.3
Q ss_pred CCceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHHHHHHHHHhc---cc----------c-cccc
Q psy3431 188 GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRK---CR----------S-ASDV 253 (549)
Q Consensus 188 ~~~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~~l~~~~~~~---~~----------~-~~e~ 253 (549)
....++-+|+||.++.++++..... .+..........-....+-+.|.+.+.+.+... .. . .-..
T Consensus 4 ~~~~~lgidIggt~i~~~l~d~~g~-~l~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iGIgi~~pg~~~~~~ 82 (314)
T COG1940 4 EAMTVLGIDIGGTKIKVALVDLDGE-ILLRERIPTPTPDPEEAILEAILALVAELLKQAQGRVAIIGIGIPGPGDVDNGT 82 (314)
T ss_pred cCcEEEEEEecCCEEEEEEECCCCc-EEEEEEEecCCCCchhHHHHHHHHHHHHHHHhcCCcCceEEEEeccceeccCCc
Confidence 4577899999999999999987665 443333333233333577777777777666542 11 0 0000
Q ss_pred -CC---CCCChHHH-HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHH
Q psy3431 254 -GD---HHGDAHFV-VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 296 (549)
Q Consensus 254 -~K---~~~~i~~V-i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~ 296 (549)
.. .....+.+ +++.|++.| +.++.. .|=-.++|+|=.++++
T Consensus 83 ~~~~~~~~~~~~~~~l~~~L~~~~-~~Pv~v-eNDan~aalaE~~~g~ 128 (314)
T COG1940 83 VIVPAPNLGWWNGVDLAEELEARL-GLPVFV-ENDANAAALAEAWFGA 128 (314)
T ss_pred EEeecCCCCccccccHHHHHHHHH-CCCEEE-ecHHHHHHHHHHHhCC
Confidence 11 12222333 889999999 444432 3333466666666554
No 201
>PF11314 DUF3117: Protein of unknown function (DUF3117); InterPro: IPR021465 This family of proteins with unknown function appears to be restricted to Actinobacteria.
Probab=22.94 E-value=34 Score=23.30 Aligned_cols=23 Identities=39% Similarity=0.618 Sum_probs=18.0
Q ss_pred CCCCCCCCCChhhHHHccHHHHH
Q psy3431 273 CGKSLNLSINPDEAVAYGAAVQA 295 (549)
Q Consensus 273 ~~~~~~~~~~~~eava~Gaa~~a 295 (549)
|+-.+...+|++||.++|.++.+
T Consensus 27 GGGRLVvEl~~~Ea~~L~~~l~~ 49 (51)
T PF11314_consen 27 GGGRLVVELNPDEAKELGEALKE 49 (51)
T ss_pred CCcEEEEEeCHHHHHHHHHHHHh
Confidence 34456678899999999998765
No 202
>PF14628 DUF4454: Domain of unknown function (DUF4454)
Probab=22.91 E-value=1.1e+02 Score=27.77 Aligned_cols=59 Identities=29% Similarity=0.346 Sum_probs=32.9
Q ss_pred eEEEEecCCCCHHHHHHHHHHHHHcCCceeEeecchhHHHHhhhcccCCCCCceEEEEEcCCC
Q psy3431 138 DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGG 200 (549)
Q Consensus 138 ~~vitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~Aaal~y~~~~~~~~~~~vlv~D~Ggg 200 (549)
.-.|+||+..+..|-+++.+ .|-.+..+++|-+-=.-.........-...++++|.|--
T Consensus 53 ~GtIsvP~~iT~eQ~~~~l~----~G~e~~vv~nelTgE~~~l~~~~~~~~~~~~l~Y~~g~~ 111 (216)
T PF14628_consen 53 EGTISVPASITPEQYEAVLK----EGKEVEVVLNELTGETRILKLDPGTDYGDYVLFYDSGEE 111 (216)
T ss_pred cceEEeeeecCHHHHHHHHh----CCceEEEEeccccCceeeeEeCCCCCCcceEEEEecCCC
Confidence 44799999999999887543 344444455554432211112222223455666666643
No 203
>KOG3133|consensus
Probab=22.88 E-value=3.4e+02 Score=26.17 Aligned_cols=43 Identities=19% Similarity=0.178 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHhhcCCcCCHHHHHHHHHHHHHHHHHHHHHH
Q psy3431 484 SRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKM 526 (549)
Q Consensus 484 ~~i~~~l~~~~~Wl~~~~~a~~~~~~~kl~~L~~~~~~i~~r~ 526 (549)
..+++.....=.||.+|...-..+.++|++.-.+++..|..-+
T Consensus 163 eplKEl~~~YPkwLeen~e~l~~E~~erYqkQ~~~i~~i~~~~ 205 (267)
T KOG3133|consen 163 EPLKELGANYPKWLEENGESLSKEDKERYQKQFELIKEIESVY 205 (267)
T ss_pred hhHHHHHHHhhHHHHhcccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 3466777777788887743223344445555555555555443
No 204
>PF09059 TyeA: TyeA; InterPro: IPR015144 This domain is composed of two pairs of parallel alpha-helices, and interacts with the bacterial protein YopN via hydrophobic residues located on the helices. Association of TyeA with the C terminus of YopN is accompanied by conformational changes in both polypeptides that create order out of disorder: the resulting structure then serves as an impediment to type III secretion of YopN []. ; PDB: 1XL3_D.
Probab=22.72 E-value=1.1e+02 Score=24.10 Aligned_cols=37 Identities=27% Similarity=0.298 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHHHHHhCCCcceEEEEecCCCCHHHHHHHHHHHHHc
Q psy3431 116 ISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIA 162 (549)
Q Consensus 116 v~~~~L~~l~~~a~~~~~~~~~~~vitVPa~f~~~qr~~l~~Aa~~A 162 (549)
---.||+.+++.... +-+..|.+..||+.+.+|++.|
T Consensus 40 ~qI~Flrel~~l~r~----------~Pv~vF~D~EqR~~vL~a~Q~a 76 (87)
T PF09059_consen 40 QQILFLRELKELFRL----------MPVDVFNDEEQRQNVLDAVQEA 76 (87)
T ss_dssp HHHHHHHHHHHHHHT----------S-GGGSS-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH----------CcHHhcCCHHHHHHHHHHHHHH
Confidence 344577888777763 5567899999999999999876
No 205
>PRK10404 hypothetical protein; Provisional
Probab=21.91 E-value=4.4e+02 Score=21.40 Aligned_cols=67 Identities=12% Similarity=0.207 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHhhhhh--hHHHHHHHHHhhhHHHHHHHHHHHhhhccCccChhHHHHHHHHHHHHHHHhhcCC
Q psy3431 431 EEIDRMINDAERYKDE--DEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNT 501 (549)
Q Consensus 431 eei~~~~~~~~~~~~~--D~~~~~~~~a~N~LE~~iy~~r~~l~~~~~~~~~~e~~~i~~~l~~~~~Wl~~~~ 501 (549)
.++..+...++++... +.-..+..++|..+++.+...|+.|.+. ...-..........+.+++-+|+
T Consensus 12 ~dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~~----~~~~~~~~k~aa~~td~yV~e~P 80 (101)
T PRK10404 12 DDLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQA----SDSYYYRAKQAVYRADDYVHEKP 80 (101)
T ss_pred HHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh----HHHHHHHHHHHHHHHHHHHHhCc
Confidence 4566666666665532 2344556678888888888888887641 12222345666677777776653
No 206
>TIGR01312 XylB D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.
Probab=21.69 E-value=50 Score=35.13 Aligned_cols=17 Identities=35% Similarity=0.556 Sum_probs=15.1
Q ss_pred EEEEcCccceEEEEEEC
Q psy3431 4 IGIDLGTTYSCVAVFQQ 20 (549)
Q Consensus 4 vGID~Gtt~s~va~~~~ 20 (549)
+|||+|||+++++++..
T Consensus 1 lgIDiGtt~ik~~l~d~ 17 (481)
T TIGR01312 1 LGIDLGTSGVKALLVDE 17 (481)
T ss_pred CceeecCcceEEEEECC
Confidence 69999999999998853
No 207
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=21.55 E-value=6.6e+02 Score=28.42 Aligned_cols=69 Identities=20% Similarity=0.175 Sum_probs=33.0
Q ss_pred CCCCHHHHHHHHHHHHhhhhhhHHHHHH-HHHhhhHHHHHHHHHHHhhhcc--CccChhHHHHHHHHHHHHHH
Q psy3431 426 GRLSKEEIDRMINDAERYKDEDEKQKER-ISARNNLEAYVFNVKQALDDAG--NKLTESEKSRCREECDATLK 495 (549)
Q Consensus 426 ~~ls~eei~~~~~~~~~~~~~D~~~~~~-~~a~N~LE~~iy~~r~~l~~~~--~~~~~~e~~~i~~~l~~~~~ 495 (549)
+.||..| .++.++++.|..+=+..+.+ .++++.++..-+.+...-+... ..+++.+++.|.+.|.+.-+
T Consensus 628 P~LS~AE-r~~~~EL~~~~~~l~~l~~si~~lk~k~~~Q~~~i~~~~~~~~~s~~L~~~Q~~~I~~iL~~~~~ 699 (717)
T PF10168_consen 628 PVLSEAE-REFKKELERMKDQLQDLKASIEQLKKKLDYQQRQIESQKSPKKKSIVLSESQKRTIKEILKQQGE 699 (717)
T ss_pred CCCCHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCccCCHHHHHHHHHHHHHHHH
Confidence 4577766 55666666655432222222 2244444433332221111111 35677777777777776543
No 208
>PRK00877 hisD bifunctional histidinal dehydrogenase/ histidinol dehydrogenase; Reviewed
Probab=21.53 E-value=91 Score=32.43 Aligned_cols=74 Identities=28% Similarity=0.416 Sum_probs=51.1
Q ss_pred CcceEEEEecCCCCHHHHHHHHHHHHHcCCceeEeecchhH-HHHhhhcccCCC-----CC--------c----eEEEEE
Q psy3431 135 SVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA-AALAYGLDKNLK-----GE--------R----NVLIFD 196 (549)
Q Consensus 135 ~~~~~vitVPa~f~~~qr~~l~~Aa~~AGl~~~~li~Ep~A-aal~y~~~~~~~-----~~--------~----~vlv~D 196 (549)
-+.++|++.|+. +..---.+.-||+++|.+.+.-+--..| ||++||...-.+ .+ + ..+-+|
T Consensus 150 GV~~Iv~~TPp~-~g~i~p~vL~AA~~~Gv~eIy~vGGAQAIAAlAyGTetIp~VDkIvGPGN~yV~~AK~~v~g~V~ID 228 (425)
T PRK00877 150 GVKEIVMVTPPP-DGEINPAILAAAALAGVDEVYKVGGAQAIAALAYGTESIPKVDKIVGPGNIYVTAAKRLVFGVVGID 228 (425)
T ss_pred CCCeEEEEeCCC-CCCCCHHHHHHHHHcCCCeeeccCCHHHHHHHHcCCCCCCCCcEEECCCcHHHHHHHHHHcCCcCcC
Confidence 467889999985 4334567889999999999988888888 469998753211 01 1 113466
Q ss_pred cCCCceeeeEEEe
Q psy3431 197 LGGGTFDVSILSI 209 (549)
Q Consensus 197 ~Gggt~dvsv~~~ 209 (549)
+=+|-+.+.|+.-
T Consensus 229 ~~AGPSEvlViAD 241 (425)
T PRK00877 229 MIAGPSEILVIAD 241 (425)
T ss_pred CCCCCceeEEEeC
Confidence 6677777777653
No 209
>KOG4403|consensus
Probab=21.53 E-value=7.3e+02 Score=25.76 Aligned_cols=19 Identities=26% Similarity=0.216 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHhhcC
Q psy3431 482 EKSRCREECDATLKWLDNN 500 (549)
Q Consensus 482 e~~~i~~~l~~~~~Wl~~~ 500 (549)
|.+.+...|.+++.=|+.+
T Consensus 310 elE~lR~~L~kAEkele~n 328 (575)
T KOG4403|consen 310 ELEQLRVALEKAEKELEAN 328 (575)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4466777788888777766
No 210
>COG3894 Uncharacterized metal-binding protein [General function prediction only]
Probab=21.15 E-value=1.8e+02 Score=30.85 Aligned_cols=48 Identities=21% Similarity=0.319 Sum_probs=39.1
Q ss_pred ceEEEEEcCCCceeeeEEEeeCCcEEEEEEecCCCCCCcchHHHHHHH
Q psy3431 190 RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS 237 (549)
Q Consensus 190 ~~vlv~D~Gggt~dvsv~~~~~~~~~~v~~~~~d~~lGG~~iD~~l~~ 237 (549)
.+=+-+|+|.+++-+-++.+..+.......+....--||+++|.+..-
T Consensus 164 ~YGvAvDlGTS~i~aqlVDL~sgevv~t~~T~n~ql~~Ge~m~sr~~~ 211 (614)
T COG3894 164 AYGVAVDLGTSGIRAQLVDLKSGEVVATVITSNPQLPGGEVMDSRDFA 211 (614)
T ss_pred eeeeEEecccceeeeEEEeccCCcEEEeeeccCCCCCCchhhHHHHHH
Confidence 344679999999999999999886677777777788899999977643
No 211
>PRK12408 glucokinase; Provisional
Probab=20.81 E-value=65 Score=32.56 Aligned_cols=18 Identities=28% Similarity=0.274 Sum_probs=16.3
Q ss_pred EEEEEcCccceEEEEEEC
Q psy3431 3 AIGIDLGTTYSCVAVFQQ 20 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~ 20 (549)
++|||+|.|+++++++..
T Consensus 18 ~L~~DIGGT~i~~al~d~ 35 (336)
T PRK12408 18 FVAADVGGTHVRVALVCA 35 (336)
T ss_pred EEEEEcChhhhheeEEec
Confidence 799999999999998853
No 212
>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway. CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.
Probab=20.78 E-value=1.1e+02 Score=28.24 Aligned_cols=21 Identities=33% Similarity=0.412 Sum_probs=17.1
Q ss_pred EEEEEcCccceEEEEEECCeE
Q psy3431 3 AIGIDLGTTYSCVAVFQQGKV 23 (549)
Q Consensus 3 vvGID~Gtt~s~va~~~~g~~ 23 (549)
++-||.|+|+++++++.++..
T Consensus 1 ~L~iDiGNT~ik~~~~~~~~~ 21 (206)
T PF03309_consen 1 ILLIDIGNTRIKWALFDGDKL 21 (206)
T ss_dssp EEEEEE-SSEEEEEEEETTEE
T ss_pred CEEEEECCCeEEEEEEECCEE
Confidence 478999999999999987754
No 213
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=20.73 E-value=99 Score=28.20 Aligned_cols=34 Identities=32% Similarity=0.367 Sum_probs=23.5
Q ss_pred EecCCCCHH--HHHHHHHHHHHcCCceeEeecchhHHH
Q psy3431 142 TVPAYFNDA--QRQATKDAGAIAGLNVMRIVNEPTAAA 177 (549)
Q Consensus 142 tVPa~f~~~--qr~~l~~Aa~~AGl~~~~li~Ep~Aaa 177 (549)
..|++.+-- ||-++-.| +|==+.+.|.+|||.|.
T Consensus 148 ~YP~~LSGGQQQR~aIARa--LameP~vmLFDEPTSAL 183 (256)
T COG4598 148 AYPAHLSGGQQQRVAIARA--LAMEPEVMLFDEPTSAL 183 (256)
T ss_pred cCccccCchHHHHHHHHHH--HhcCCceEeecCCcccC
Confidence 789998754 45555444 34346788999999873
No 214
>PLN02405 hexokinase
Probab=20.50 E-value=3e+02 Score=29.47 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.8
Q ss_pred CCceEEEEEcCCCceeeeEEEeeC
Q psy3431 188 GERNVLIFDLGGGTFDVSILSIDE 211 (549)
Q Consensus 188 ~~~~vlv~D~Gggt~dvsv~~~~~ 211 (549)
+...+|.+|+||.+|-|..+++.+
T Consensus 93 E~G~flAlDlGGTNfRV~~V~L~g 116 (497)
T PLN02405 93 EKGLFYALDLGGTNFRVLRVLLGG 116 (497)
T ss_pred cceeEEEEecCCceEEEEEEEEcC
Confidence 567899999999999999999975
No 215
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=20.41 E-value=2.9e+02 Score=23.25 Aligned_cols=42 Identities=21% Similarity=0.331 Sum_probs=29.6
Q ss_pred EEEEEeCCC-ccEEEEEEecCCCCceeEEEecCCCCCCHHHHHHHHHHHHh
Q psy3431 393 DVTFDLDAN-GILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 442 (549)
Q Consensus 393 ~v~~~~d~~-g~l~v~~~~~~t~~~~~i~i~~~~~~ls~eei~~~~~~~~~ 442 (549)
.+.|.+|.. |.+.|+..+..||+... ..+++++-++.+++.+
T Consensus 68 ~l~F~~dd~lg~~vVkI~d~~TgeVIR--------qIPpee~L~l~~r~~d 110 (120)
T COG1334 68 HLNFSYDDELGELVVKIIDKDTGEVIR--------QIPPEEALELAARMRD 110 (120)
T ss_pred ceEEEEecccCcEEEEEEECCCCcchh--------hCChHHHHHHHHHHHH
Confidence 477888664 89999999999997542 3566766555555443
No 216
>smart00732 YqgFc Likely ribonuclease with RNase H fold. YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.
Probab=20.18 E-value=2.4e+02 Score=22.03 Aligned_cols=20 Identities=25% Similarity=0.323 Sum_probs=16.5
Q ss_pred eEEEEEcCCCceeeeEEEee
Q psy3431 191 NVLIFDLGGGTFDVSILSID 210 (549)
Q Consensus 191 ~vlv~D~Gggt~dvsv~~~~ 210 (549)
.+|.+|+||..+-++++.-.
T Consensus 2 ~ilgiD~Ggt~i~~a~~d~~ 21 (99)
T smart00732 2 RVLGLDPGRKGIGVAVVDET 21 (99)
T ss_pred cEEEEccCCCeEEEEEECCC
Confidence 47899999999888888643
No 217
>PF09457 RBD-FIP: FIP domain ; InterPro: IPR019018 The Rab11 GTPase regulates recycling of internalized plasma membrane receptors and is essential for completion of cytokinesis. A family of Rab11 interacting proteins (FIPs) that conserve a C-terminal Rab-binding domain (RBD) selectively recognise the active form of Rab11. FIPs are diverse in sequence length and composition toward their N-termini, presumably a feature that underpins their specific roles in Rab11-mediated vesicle trafficking. They have been divided into three subfamilies (classe I, II, and III)on the basis of domain architecture. Class I FIPs comprises a subfamily of three proteins (Rip11/pp75/FIP5, Rab-coupling protein (RCP), and FIP2) that possess an N- terminal C2 domain, localize to recycling endosomes, and regulate plasma membrane recycling. The class II subfamily consists of two proteins (FIP3/eferin/arfophilin and FIP4) with tandem EF hands and a proline-rich region. Class II FIPs localize to recycling endosomes, the trans-Golgi network, and have been implicated in the regulation of membrane trafficking during cytokinesis. The class III subfamily consists of a single protein, FIP1, which does not contain obvious homology domains or motifs other than the FIP-RBD [, , , ]. The FIP-RBD domain is also found in Rab6-interacting protein Erc1/Elks. Erc1 is the regulatory subunit of the IKK complex and probably recruits IkappaBalpha/NFKBIA to the complex []. It may be involved in the organisation of the cytomatrix at the nerve terminals active zone (CAZ) which regulates neurotransmitter release. It may also be involved in vesicle trafficking at the CAZ, as well as in Rab-6 regulated endosomes to Golgi transport []. The FIB-RBD domain consists of an N-terminal long alpha-helix, followed by a 90 degrees bend at a conserved proline residue, a 3(10) helix and a C-terminal short beta-strand, adopting an "L" shape. The long alpha-helix forms a parallel coiled-coil homodimer that symmetrically interacts with two Rab11 molecules on both sides, forming a quaternary Rab11-(FIP)2-Rab11 complex. The Rab11-interacting region of FIP-RBD is confined to the C-terminal 24 amino acids, which cover the C-terminal half of the long alpha-helix and the short beta-strand [, , , ]. This entry represents the FIP-RBD domain.; PDB: 2HV8_E 2D7C_D 2K6S_B 2GZD_D 2GZH_B.
Probab=20.09 E-value=3.1e+02 Score=18.94 Aligned_cols=23 Identities=22% Similarity=0.209 Sum_probs=15.2
Q ss_pred HHHHHHHhhhHHHHHHHHHHHhh
Q psy3431 450 QKERISARNNLEAYVFNVKQALD 472 (549)
Q Consensus 450 ~~~~~~a~N~LE~~iy~~r~~l~ 472 (549)
..++....++||.||..+=-.+.
T Consensus 16 ~~~k~~~v~eLe~YiD~LL~rVm 38 (48)
T PF09457_consen 16 NARKDSRVRELEDYIDNLLVRVM 38 (48)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444566789999988765554
No 218
>PRK09604 UGMP family protein; Validated
Probab=20.04 E-value=8.9e+02 Score=24.29 Aligned_cols=21 Identities=33% Similarity=0.517 Sum_probs=17.3
Q ss_pred CCEEEEEcCccceEEEEEECC
Q psy3431 1 MPAIGIDLGTTYSCVAVFQQG 21 (549)
Q Consensus 1 m~vvGID~Gtt~s~va~~~~g 21 (549)
|.++|||=-+..+++|+++++
T Consensus 1 m~iLgIdTS~~~~sval~~~~ 21 (332)
T PRK09604 1 MLILGIETSCDETSVAVVDDG 21 (332)
T ss_pred CeEEEEEccccceEEEEEECC
Confidence 889999987777888888754
No 219
>KOG2517|consensus
Probab=20.02 E-value=1.1e+02 Score=32.78 Aligned_cols=35 Identities=29% Similarity=0.375 Sum_probs=30.1
Q ss_pred HHHHHHhhhCCCCCCCCCChhhHHHccHHHHHHHHcC
Q psy3431 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSG 300 (549)
Q Consensus 264 i~~~l~~~f~~~~~~~~~~~~eava~Gaa~~a~~l~~ 300 (549)
+-+++.+++ +.++.++.++|. ++.|||+.|+..++
T Consensus 430 l~Q~~ADi~-g~pv~~p~~~e~-~~~GaA~l~~~a~~ 464 (516)
T KOG2517|consen 430 LMQLQADIL-GLPVVRPQDVEA-VALGAAMLAGAASG 464 (516)
T ss_pred HHHHHHHHh-CCccccccchhH-HHHHHHHHHHhhcC
Confidence 677788888 578888888887 99999999998887
Done!