RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3431
(549 letters)
>gnl|CDD|215656 pfam00012, HSP70, Hsp70 protein. Hsp70 chaperones help to fold
many proteins. Hsp70 assisted folding involves repeated
cycles of substrate binding and release. Hsp70 activity
is ATP dependent. Hsp70 proteins are made up of two
regions: the amino terminus is the ATPase domain and the
carboxyl terminus is the substrate binding region.
Length = 598
Score = 708 bits (1829), Expect = 0.0
Identities = 302/608 (49%), Positives = 376/608 (61%), Gaps = 94/608 (15%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRN 62
IGIDLGTT SCVAV + G E+IAND+GNRTTPS VAFT ERL+G AAK Q NP+N
Sbjct: 1 VIGIDLGTTNSCVAVMEGGGPEVIANDEGNRTTPSVVAFTPKERLVGQAAKRQAVTNPKN 60
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRS-KPKIQVEFKGERKTFAPEEISSMVL 121
TVF KRLIGRKF DP +Q+D+KH P+ VV + ++V + GE TF PE+IS+MVL
Sbjct: 61 TVFSVKRLIGRKFSDPVVQRDIKHVPYKVVKLPNGDAGVEVRYLGE--TFTPEQISAMVL 118
Query: 122 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG 181
K+KETAEAYLG V DAVITVPAYFNDAQRQATKDAG IAGLNV+RI+NEPTAAALAYG
Sbjct: 119 QKLKETAEAYLGEPVTDAVITVPAYFNDAQRQATKDAGRIAGLNVLRIINEPTAAALAYG 178
Query: 182 LDKNLKGERNVLIFD----------------------------LGGGTFDVSIL------ 207
LDK ERNVL+FD LGG FD ++
Sbjct: 179 LDKK-DKERNVLVFDLGGGTFDVSILEIGDGVFEVLATNGDTHLGGEDFDNRLVDHFVEE 237
Query: 208 -----SID---------------EGALFEVRSTAGDTHL-------GGEDFD-------- 232
ID E A E+ S + +L G+D
Sbjct: 238 FKKKYGIDLSKDPRALQRLREAAEKAKIELSSNQTEINLPFITAMADGKDVSGTLTRAKF 297
Query: 233 NRLVSHLAEEFKRKCRSA-SDVGDHHGDAHFV-----------VQSLLQNFFCGKSLNLS 280
L + L E A D + V VQ L++ FF GK +
Sbjct: 298 EELCADLFERTLEPVEKALKDAKLSKSEIDEVVLVGGSTRIPAVQELVKEFF-GKEPSKG 356
Query: 281 INPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPC 340
+NPDEAVA GAAVQA +LSG ++DVLL+DVTPLSLGIET GGVMTKLI RNT IP
Sbjct: 357 VNPDEAVAIGAAVQAGVLSGTF--DVKDVLLLDVTPLSLGIETLGGVMTKLIPRNTTIPT 414
Query: 341 KQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDA 400
K++Q F+T ADNQ AV IQV++GER M DN LLG+F+L GIPPAPRGVP+I+VTFD+DA
Sbjct: 415 KKSQIFSTAADNQTAVEIQVYQGEREMAPDNKLLGSFELDGIPPAPRGVPQIEVTFDIDA 474
Query: 401 NGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNL 460
NGIL V+AKD +GK Q ITI G LS +EI+RM+ DAE Y ED+K+KERI A+N
Sbjct: 475 NGILTVSAKDKGTGKEQKITITASSG-LSDDEIERMVKDAEEYAAEDKKRKERIEAKNEA 533
Query: 461 EAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNTL-ADKEEYQDKLQQLQKSC 519
E YV++++++L + G+KL E++K ++ + ++WL DKEE + K ++LQK
Sbjct: 534 EEYVYSLEKSLKEEGDKLPEADK----KKVEEAIEWLKEELEGEDKEEIEAKTEELQKVV 589
Query: 520 MPLMSKMH 527
P+ +M+
Sbjct: 590 QPIGERMY 597
>gnl|CDD|233830 TIGR02350, prok_dnaK, chaperone protein DnaK. Members of this
family are the chaperone DnaK, of the DnaK-DnaJ-GrpE
chaperone system. All members of the seed alignment were
taken from completely sequenced bacterial or archaeal
genomes and (except for Mycoplasma sequence) found
clustered with other genes of this systems. This model
excludes DnaK homologs that are not DnaK itself, such as
the heat shock cognate protein HscA (TIGR01991).
However, it is not designed to distinguish among DnaK
paralogs in eukaryotes. Note that a number of dnaK genes
have shadow ORFs in the same reverse (relative to dnaK)
reading frame, a few of which have been assigned
glutamate dehydrogenase activity. The significance of
this observation is unclear; lengths of such shadow ORFs
are highly variable as if the presumptive protein
product is not conserved [Protein fate, Protein folding
and stabilization].
Length = 595
Score = 588 bits (1518), Expect = 0.0
Identities = 280/609 (45%), Positives = 356/609 (58%), Gaps = 102/609 (16%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPR 61
IGIDLGTT SCVAV + G+ +I N +G RTTPS VAFT ERL+G AK Q NP
Sbjct: 2 IIGIDLGTTNSCVAVMEGGEPVVIPNAEGARTTPSVVAFTKNGERLVGQPAKRQAVTNPE 61
Query: 62 NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVL 121
NT++ KR +GR+FD ++ ++ K P+ VV D V K + K + P+EIS+M+L
Sbjct: 62 NTIYSIKRFMGRRFD--EVTEEAKRVPYKVVGDGG----DVRVKVDGKEYTPQEISAMIL 115
Query: 122 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG 181
K+K+ AEAYLG V +AVITVPAYFNDAQRQATKDAG IAGL V+RI+NEPTAAALAYG
Sbjct: 116 QKLKKDAEAYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYG 175
Query: 182 LDKNLKGERNVLIFD----------------------------LGGGTFDVSI------- 206
LDK+ K + +L+FD LGG FD I
Sbjct: 176 LDKS-KKDEKILVFDLGGGTFDVSILEIGDGVFEVLSTAGDTHLGGDDFDQRIIDWLADE 234
Query: 207 --------LSIDEGALFEVRSTA-------------------------GDTHLGGE---- 229
LS D+ AL ++ A G HL
Sbjct: 235 FKKEEGIDLSKDKMALQRLKEAAEKAKIELSSVLSTEINLPFITADASGPKHLEMTLTRA 294
Query: 230 DFDNRLVSHLAEEFKRKCRSA-SDVGDHHGDAHFV-----------VQSLLQNFFCGKSL 277
F+ L + L E K R A D G D V VQ L+++FF GK
Sbjct: 295 KFE-ELTADLVERTKEPVRQALKDAGLSASDIDEVILVGGSTRIPAVQELVKDFF-GKEP 352
Query: 278 NLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTR 337
N S+NPDE VA GAA+Q +L GD ++DVLL+DVTPLSLGIET GGVMTKLIERNT
Sbjct: 353 NKSVNPDEVVAIGAAIQGGVLKGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTT 408
Query: 338 IPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFD 397
IP K++Q F+T ADNQPAV I V +GER M DN LG F+LTGIPPAPRGVP+I+VTFD
Sbjct: 409 IPTKKSQVFSTAADNQPAVDIHVLQGERPMAADNKSLGRFELTGIPPAPRGVPQIEVTFD 468
Query: 398 LDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISAR 457
+DANGIL+V+AKD +GK Q+ITI G LS+EEI+RM+ +AE +ED+K+KE I AR
Sbjct: 469 IDANGILHVSAKDKGTGKEQSITITASSG-LSEEEIERMVKEAEANAEEDKKRKEEIEAR 527
Query: 458 NNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 517
NN ++ + ++ L +AG+KL EK + + + L D EE + K ++LQ+
Sbjct: 528 NNADSLAYQAEKTLKEAGDKLPAEEKEKIEKAVAELKEALKGE---DVEEIKAKTEELQQ 584
Query: 518 SCMPLMSKM 526
+ L M
Sbjct: 585 ALQKLAEAM 593
>gnl|CDD|212675 cd10233, HSPA1-2_6-8-like_NBD, Nucleotide-binding domain of
HSPA1-A, -B, -L, HSPA-2, -6, -7, -8, and similar
proteins. This subfamily includes human HSPA1A (70-kDa
heat shock protein 1A, also known as HSP72; HSPA1;
HSP70I; HSPA1B; HSP70-1; HSP70-1A), HSPA1B (70-kDa heat
shock protein 1B, also known as HSPA1A; HSP70-2;
HSP70-1B), and HSPA1L (70-kDa heat shock protein 1-like,
also known as HSP70T; hum70t; HSP70-1L; HSP70-HOM). The
genes for these three HSPA1 proteins map in close
proximity on the major histocompatibility complex (MHC)
class III region on chromosome 6, 6p21.3. This subfamily
also includes human HSPA8 (heat shock 70kDa protein 8,
also known as LAP1; HSC54; HSC70; HSC71; HSP71; HSP73;
NIP71; HSPA10; the HSPA8 gene maps to 11q24.1), human
HSPA2 (70-kDa heat shock protein 2, also known as
HSP70-2; HSP70-3, the HSPA2 gene maps to 14q24.1), human
HSPA6 (also known as heat shock 70kDa protein 6
(HSP70B') gi 94717614, the HSPA6 gene maps to 1q23.3),
human HSPA7 (heat shock 70kDa protein 7 , also known as
HSP70B; the HSPA7 gene maps to 1q23.3) and Saccharmoyces
cerevisiae Stress-Seventy subfamily B/Ssb1p. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Associations of polymorphisms within the MHC-III HSP70
gene locus with longevity, systemic lupus erythematosus,
Meniere's disease, noise-induced hearing loss,
high-altitude pulmonary edema, and coronary heart
disease, have been found. HSPA2 is involved in cancer
cell survival, is required for maturation of male
gametophytes, and is linked to male infertility. The
induction of HSPA6 is a biomarker of cellular stress.
HSPA8 participates in the folding and trafficking of
client proteins to different subcellular compartments,
and in the signal transduction and apoptosis process; it
has been shown to protect cardiomyocytes against
oxidative stress partly through an interaction with
alpha-enolase. S. cerevisiae Ssb1p, is part of the
ribosome-associated complex (RAC), it acts as a
chaperone for nascent polypeptides, and is important for
translation fidelity; Ssb1p is also a [PSI+]
prion-curing factor.
Length = 376
Score = 526 bits (1357), Expect = 0.0
Identities = 203/244 (83%), Positives = 220/244 (90%), Gaps = 1/244 (0%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRN 62
AIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP N
Sbjct: 1 AIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPTN 60
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
TVFDAKRLIGRKF DP +Q DMKHWPF VVN KP I VE+KGE KTF PEEISSMVLT
Sbjct: 61 TVFDAKRLIGRKFSDPVVQSDMKHWPFKVVNGGGKPPIIVEYKGETKTFYPEEISSMVLT 120
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
KMKE AEAYLG +V +AVITVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+AYGL
Sbjct: 121 KMKEIAEAYLGKTVTNAVITVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYGL 180
Query: 183 DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 242
DK GERNVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLGGEDFDNRLV+H +E
Sbjct: 181 DKKGGGERNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGGEDFDNRLVNHFVQE 239
Query: 243 FKRK 246
FKRK
Sbjct: 240 FKRK 243
Score = 74.3 bits (183), Expect = 2e-14
Identities = 31/36 (86%), Positives = 32/36 (88%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 299
VQ LLQ+FF GK LN SINPDEAVAYGAAVQAAILS
Sbjct: 341 VQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 376
>gnl|CDD|212681 cd10241, HSPA5-like_NBD, Nucleotide-binding domain of human HSPA5
and similar proteins. This subfamily includes human
HSPA5 (also known as 70-kDa heat shock protein 5,
glucose-regulated protein 78/GRP78, and immunoglobulin
heavy chain-binding protein/BIP, MIF2; the gene encoding
HSPA5 maps to 9q33.3.), Sacchaormyces cerevisiae Kar2p
(also known as Grp78p), and related proteins. This
subfamily belongs to the heat shock protein 70 (HSP70)
family of chaperones that assist in protein folding and
assembly and can direct incompetent "client" proteins
towards degradation. HSPA5 and Kar2p are chaperones of
the endoplasmic reticulum (ER). Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs).
Multiple ER DNAJ domain proteins have been identified
and may exist in distinct complexes with HSPA5 in
various locations in the ER, for example DNAJC3-p58IPK
in the lumen. HSPA5-NEFs include SIL1 and an atypical
HSP70 family protein HYOU1/ORP150. The ATPase activity
of Kar2p is stimulated by the NEFs: Sil1p and Lhs1p.
Length = 374
Score = 463 bits (1193), Expect = e-161
Identities = 179/245 (73%), Positives = 208/245 (84%), Gaps = 2/245 (0%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPR 61
IGIDLGTTYSCV VF+ G+VEIIANDQGNR TPSYVAFTD ERLIGDAAKNQ NP
Sbjct: 2 TVIGIDLGTTYSCVGVFKNGRVEIIANDQGNRITPSYVAFTDGERLIGDAAKNQATSNPE 61
Query: 62 NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVL 121
NT+FD KRLIGRKFDD ++Q+D+K P+ VVN KP I+V+ KGE+KTF+PEEIS+MVL
Sbjct: 62 NTIFDVKRLIGRKFDDKEVQKDIKLLPYKVVNKDGKPYIEVDVKGEKKTFSPEEISAMVL 121
Query: 122 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG 181
TKMKE AEAYLG V+ AV+TVPAYFNDAQRQATKDAG IAGLNV+RI+NEPTAAA+AYG
Sbjct: 122 TKMKEIAEAYLGKKVKHAVVTVPAYFNDAQRQATKDAGTIAGLNVVRIINEPTAAAIAYG 181
Query: 182 LDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241
LDK GE+N+L+FDLGGGTFDVS+L+ID G +FEV +T GDTHLGGEDFD R++ H +
Sbjct: 182 LDKK-GGEKNILVFDLGGGTFDVSLLTIDNG-VFEVLATNGDTHLGGEDFDQRVMEHFIK 239
Query: 242 EFKRK 246
FK+K
Sbjct: 240 LFKKK 244
Score = 58.5 bits (142), Expect = 4e-09
Identities = 23/33 (69%), Positives = 25/33 (75%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 296
VQ LL+ FF GK + INPDEAVAYGAAVQA
Sbjct: 342 VQQLLKEFFNGKEPSRGINPDEAVAYGAAVQAG 374
>gnl|CDD|240227 PTZ00009, PTZ00009, heat shock 70 kDa protein; Provisional.
Length = 653
Score = 468 bits (1207), Expect = e-159
Identities = 192/248 (77%), Positives = 215/248 (86%), Gaps = 2/248 (0%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPR 61
PAIGIDLGTTYSCV V++ VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVA NP
Sbjct: 5 PAIGIDLGTTYSCVGVWKNENVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVARNPE 64
Query: 62 NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVND-RSKPKIQVEFKGERKTFAPEEISSMV 120
NTVFDAKRLIGRKFDD +Q DMKHWPF V KP I+V ++GE+KTF PEEISSMV
Sbjct: 65 NTVFDAKRLIGRKFDDSVVQSDMKHWPFKVTTGGDDKPMIEVTYQGEKKTFHPEEISSMV 124
Query: 121 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 180
L KMKE AEAYLG V+DAV+TVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+AY
Sbjct: 125 LQKMKEIAEAYLGKQVKDAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAY 184
Query: 181 GLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 240
GLDK GE+NVLIFDLGGGTFDVS+L+I++G +FEV++TAGDTHLGGEDFDNRLV
Sbjct: 185 GLDKKGDGEKNVLIFDLGGGTFDVSLLTIEDG-IFEVKATAGDTHLGGEDFDNRLVEFCV 243
Query: 241 EEFKRKCR 248
++FKRK R
Sbjct: 244 QDFKRKNR 251
Score = 443 bits (1140), Expect = e-149
Identities = 189/306 (61%), Positives = 233/306 (76%), Gaps = 20/306 (6%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIET 323
VQSL+++FF GK SINPDEAVAYGAAVQAAIL+G+QSS +QD+LL+DVTPLSLG+ET
Sbjct: 348 VQSLIKDFFNGKEPCKSINPDEAVAYGAAVQAAILTGEQSSQVQDLLLLDVTPLSLGLET 407
Query: 324 AGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIP 383
AGGVMTKLIERNT IP K++Q FTTYADNQP V IQVFEGERAMTKDNNLLG F L GIP
Sbjct: 408 AGGVMTKLIERNTTIPTKKSQIFTTYADNQPGVLIQVFEGERAMTKDNNLLGKFHLDGIP 467
Query: 384 PAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERY 443
PAPRGVP+I+VTFD+DANGILNV+A+D S+GKS ITI NDKGRLSK +IDRM+N+AE+Y
Sbjct: 468 PAPRGVPQIEVTFDIDANGILNVSAEDKSTGKSNKITITNDKGRLSKADIDRMVNEAEKY 527
Query: 444 KDEDEKQKERISARNNLEAYVFNVKQALDD--AGNKLTESEKSRCREECDATLKWLDNNT 501
K EDE +ER+ A+N LE Y +++K L D KL++S+K+ + D L+WL+ N
Sbjct: 528 KAEDEANRERVEAKNGLENYCYSMKNTLQDEKVKGKLSDSDKATIEKAIDEALEWLEKNQ 587
Query: 502 LADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRG------------------GP 543
LA+KEE++ K ++++ C P+M+KM+ AGG G MP G GP
Sbjct: 588 LAEKEEFEHKQKEVESVCNPIMTKMYQAAGGGMPGGMPGGMPGGMPGGAGPAGAGASSGP 647
Query: 544 TVEEVD 549
TVEEVD
Sbjct: 648 TVEEVD 653
>gnl|CDD|234715 PRK00290, dnaK, molecular chaperone DnaK; Provisional.
Length = 627
Score = 397 bits (1023), Expect = e-132
Identities = 147/245 (60%), Positives = 184/245 (75%), Gaps = 9/245 (3%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPR 61
IGIDLGTT SCVAV + G+ ++I N +G RTTPS VAFT ERL+G AK Q NP
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPKVIENAEGARTTPSVVAFTKDGERLVGQPAKRQAVTNPE 63
Query: 62 NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVL 121
NT+F KRL+GR+ D ++Q+D+K P+ +V VE G K + P+EIS+M+L
Sbjct: 64 NTIFSIKRLMGRR--DEEVQKDIKLVPYKIVKA-DNGDAWVEIDG--KKYTPQEISAMIL 118
Query: 122 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG 181
K+K+ AE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V+RI+NEPTAAALAYG
Sbjct: 119 QKLKKDAEDYLGEKVTEAVITVPAYFNDAQRQATKDAGKIAGLEVLRIINEPTAAALAYG 178
Query: 182 LDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241
LDK KG+ +L++DLGGGTFDVSIL I +G +FEV ST GDTHLGG+DFD R++ +LA+
Sbjct: 179 LDK--KGDEKILVYDLGGGTFDVSILEIGDG-VFEVLSTNGDTHLGGDDFDQRIIDYLAD 235
Query: 242 EFKRK 246
EFK++
Sbjct: 236 EFKKE 240
Score = 381 bits (982), Expect = e-126
Identities = 151/335 (45%), Positives = 197/335 (58%), Gaps = 27/335 (8%)
Query: 233 NRLVSHLAEEFKRKCRSA-SDVGDHHGDAHFV-----------VQSLLQNFFCGKSLNLS 280
L L E C+ A D G D V VQ L++ FF GK N
Sbjct: 299 EELTEDLVERTIEPCKQALKDAGLSVSDIDEVILVGGSTRMPAVQELVKEFF-GKEPNKG 357
Query: 281 INPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPC 340
+NPDE VA GAA+Q +L+GD ++DVLL+DVTPLSLGIET GGVMTKLIERNT IP
Sbjct: 358 VNPDEVVAIGAAIQGGVLAGD----VKDVLLLDVTPLSLGIETLGGVMTKLIERNTTIPT 413
Query: 341 KQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDA 400
K++Q F+T ADNQPAVTI V +GER M DN LG F+LTGIPPAPRGVP+I+VTFD+DA
Sbjct: 414 KKSQVFSTAADNQPAVTIHVLQGEREMAADNKSLGRFNLTGIPPAPRGVPQIEVTFDIDA 473
Query: 401 NGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNL 460
NGI++V+AKD +GK Q+ITI G LS EEI+RM+ DAE +ED+K+KE + ARN
Sbjct: 474 NGIVHVSAKDKGTGKEQSITITASSG-LSDEEIERMVKDAEANAEEDKKRKELVEARNQA 532
Query: 461 EAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCM 520
++ ++ ++ L + G+K+ EK + + L DKE + K ++L ++
Sbjct: 533 DSLIYQTEKTLKELGDKVPADEKEKIEAAIKELKEALKGE---DKEAIKAKTEELTQASQ 589
Query: 521 PLMSKMHGGAGGASAGDMPRGG------PTVEEVD 549
L M+ A A EEV
Sbjct: 590 KLGEAMYQQAQAAQGAAGAAAKDDDVVDAEFEEVK 624
>gnl|CDD|212676 cd10234, HSPA9-Ssq1-like_NBD, Nucleotide-binding domain of human
HSPA9 and similar proteins. This subfamily includes
human mitochondrial HSPA9 (also known as 70-kDa heat
shock protein 9, CSA; MOT; MOT2; GRP75; PBP74; GRP-75;
HSPA9B; MTHSP75; the gene encoding HSPA9 maps to
5q31.1), Escherichia coli DnaK, Saccharomyces cerevisiae
Stress-seventy subfamily Q protein 1/Ssq1p (also called
Ssc2p, Ssh1p, mtHSP70 homolog), and S. cerevisiae
Stress-Seventy subfamily C/Ssc1p (also called mtHSP70,
Endonuclease SceI 75 kDa subunit). It belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly, and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively.
Length = 376
Score = 368 bits (946), Expect = e-124
Identities = 142/245 (57%), Positives = 177/245 (72%), Gaps = 8/245 (3%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPR 61
IGIDLGTT SCVAV + G+ +I N +G+RTTPS VAFT ERL+G AK Q NP
Sbjct: 4 IIGIDLGTTNSCVAVMEGGEPTVIPNAEGSRTTPSVVAFTKKGERLVGQPAKRQAVTNPE 63
Query: 62 NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVL 121
NT+F KR +GRKFD+ + ++ + + K +I K + P+EIS+M+L
Sbjct: 64 NTIFSIKRFMGRKFDEVEEERKVPYKVVVDEGGNYKVEIDSN----GKDYTPQEISAMIL 119
Query: 122 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG 181
K+KE AEAYLG V +AVITVPAYFND+QRQATKDAG IAGL V+RI+NEPTAAALAYG
Sbjct: 120 QKLKEDAEAYLGEKVTEAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAAALAYG 179
Query: 182 LDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241
LDK KG +L++DLGGGTFDVSIL I +G +FEV +T GDTHLGG+DFD R++ L E
Sbjct: 180 LDK--KGNEKILVYDLGGGTFDVSILEIGDG-VFEVLATNGDTHLGGDDFDQRIIDWLVE 236
Query: 242 EFKRK 246
EFK++
Sbjct: 237 EFKKE 241
Score = 52.3 bits (126), Expect = 3e-07
Identities = 18/35 (51%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 298
VQ L++ F GK N +NPDE VA GAA+Q +L
Sbjct: 343 VQELVKELF-GKEPNKGVNPDEVVAIGAAIQGGVL 376
>gnl|CDD|233673 TIGR01991, HscA, Fe-S protein assembly chaperone HscA. The Heat
Shock Cognate proteins HscA and HscB act together as
chaperones. HscA resembles DnaK but belongs in a
separate clade. The apparent function is to aid assembly
of iron-sulfur cluster proteins. Homologs from Buchnera
and Wolbachia are clearly in the same clade but are
highly derived and score lower than some examples of
DnaK [Protein fate, Protein folding and stabilization].
Length = 599
Score = 373 bits (961), Expect = e-123
Identities = 203/559 (36%), Positives = 290/559 (51%), Gaps = 94/559 (16%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAF-TDTERLIGDAAKNQVAMNPR 61
A+GIDLGTT S VA + G E++ + +G PS V + D +G A A +P+
Sbjct: 1 AVGIDLGTTNSLVASVRSGVPEVLPDAEGRVLLPSVVRYLKDGGVEVGKEALAAAAEDPK 60
Query: 62 NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVL 121
NT+ KRL+GR +D K P+ V+ P V + + T P E+S+ +L
Sbjct: 61 NTISSVKRLMGRSIEDIKTF---SILPYRFVDG---PGEMVRLRTVQGTVTPVEVSAEIL 114
Query: 122 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG 181
K+K+ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+R++NEPTAAA+AYG
Sbjct: 115 KKLKQRAEESLGGDLVGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAVAYG 174
Query: 182 LDKNLKGERNVLIFDL----------------------------GGGTFDVSI------- 206
LDK E ++DL GG FD ++
Sbjct: 175 LDKA--SEGIYAVYDLGGGTFDVSILKLTKGVFEVLATGGDSALGGDDFDHALAKWILKQ 232
Query: 207 ----LSIDEG--------------ALFEVRSTAGDTHLGGEDFD--------NRLVSHLA 240
++ AL + S D L G+DF L+ L
Sbjct: 233 LGISADLNPEDQRLLLQAARAAKEALTDAESVEVDFTLDGKDFKGKLTRDEFEALIQPLV 292
Query: 241 EEFKRKCRSA-SDVGDHHGDAHFV-----------VQSLLQNFFCGKSLNLSINPDEAVA 288
++ CR A D G + V V+ + F G+ I+PD+ VA
Sbjct: 293 QKTLSICRRALRDAGLSVEEIKGVVLVGGSTRMPLVRRAVAELF-GQEPLTDIDPDQVVA 351
Query: 289 YGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTT 348
GAA+QA +L+G++ D+LL+DVTPLSLGIET GG++ K+I RNT IP + Q FTT
Sbjct: 352 LGAAIQADLLAGNRIG--NDLLLLDVTPLSLGIETMGGLVEKIIPRNTPIPVARAQEFTT 409
Query: 349 YADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTA 408
Y D Q A+ I V +GER + +D L F+L GIPP G +I VTF +DA+G+L V+A
Sbjct: 410 YKDGQTAMVIHVVQGERELVEDCRSLARFELRGIPPMVAGAARIRVTFQVDADGLLTVSA 469
Query: 409 KDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDED----EKQKERISARNNLEAYV 464
++ S+G Q+I +K G LS EEI+RM+ D+ ++ +ED ++++ A LEA
Sbjct: 470 QEQSTGVEQSIQVKPSYG-LSDEEIERMLKDSFKHAEEDMYARALAEQKVEAERILEA-- 526
Query: 465 FNVKQALDDAGNKLTESEK 483
++ AL G+ L+E E+
Sbjct: 527 --LQAALAADGDLLSEDER 543
>gnl|CDD|212667 cd10170, HSP70_NBD, Nucleotide-binding domain of the HSP70 family.
HSP70 (70-kDa heat shock protein) family chaperones
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some HSP70 family members are not
chaperones but instead, function as NEFs to remove ADP
from their HSP70 chaperone partners during the ATP
hydrolysis cycle, some may function as both chaperones
and NEFs.
Length = 369
Score = 355 bits (913), Expect = e-119
Identities = 146/245 (59%), Positives = 177/245 (72%), Gaps = 7/245 (2%)
Query: 4 IGIDLGTTYSCVAVFQ-QGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPR 61
IGIDLGTT S VA GK EII N +G+RTTPS V F E L+G+AAK Q NP
Sbjct: 1 IGIDLGTTNSAVAYVDNGGKPEIIPNGEGSRTTPSVVYFDGDGEVLVGEAAKRQALDNPE 60
Query: 62 NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVL 121
NTV D KRLIGRKFDDP +Q K + DR P I V + K ++PEE+S+++L
Sbjct: 61 NTVGDFKRLIGRKFDDPLVQSAKKV----IGVDRGAPIIPVPVELGGKKYSPEEVSALIL 116
Query: 122 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG 181
K+KE AEAYLG V +AVITVPAYFNDAQR+ATK+A IAGLNV+R++NEPTAAALAYG
Sbjct: 117 KKLKEDAEAYLGEPVTEAVITVPAYFNDAQREATKEAAEIAGLNVVRLINEPTAAALAYG 176
Query: 182 LDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241
LDK + R +L+FDLGGGTFDVS++ ++ G FEV +T GD HLGG+DFDN L +LAE
Sbjct: 177 LDKKDEKGRTILVFDLGGGTFDVSLVEVEGGV-FEVLATGGDNHLGGDDFDNALADYLAE 235
Query: 242 EFKRK 246
+FK K
Sbjct: 236 KFKEK 240
Score = 46.1 bits (110), Expect = 3e-05
Identities = 19/33 (57%), Positives = 23/33 (69%), Gaps = 1/33 (3%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 296
V+ LL+ F GK SI+PDEAVA GAA+ AA
Sbjct: 338 VRELLEELF-GKKPLRSIDPDEAVALGAAIYAA 369
>gnl|CDD|212683 cd11733, HSPA9-like_NBD, Nucleotide-binding domain of human HSPA9,
Escherichia coli DnaK, and similar proteins. This
subgroup includes human mitochondrial HSPA9 (also known
as 70-kDa heat shock protein 9, CSA; MOT; MOT2; GRP75;
PBP74; GRP-75; HSPA9B; MTHSP75; the gene encoding HSPA9
maps to 5q31.1), Escherichia coli DnaK, and
Saccharomyces cerevisiae Stress-Seventy subfamily
C/Ssc1p (also called mtHSP70, Endonuclease SceI 75 kDa
subunit). It belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs); for Escherichia coli DnaK, these are the
DnaJ and GrpE, respectively. HSPA9 is involved in
multiple processses including mitochondrial import,
antigen processing, control of cellular proliferation
and differentiation, and regulation of glucose
responses. During glucose deprivation-induced cellular
stress, HSPA9 plays an important role in the suppression
of apoptosis by inhibiting a conformational change in
Bax that allow the release of cytochrome c. DnaK
modulates the heat shock response in Escherichia coli.
It protects E. coli from protein carbonylation, an
irreversible oxidative modification that increases
during organism aging and bacterial growth arrest. Under
severe thermal stress, it functions as part of a
bi-chaperone system: the DnaK system and the
ring-forming AAA+ chaperone ClpB (Hsp104) system, to
promote cell survival. DnaK has also been shown to
cooperate with GroEL and the ribosome-associated
Escherichia coli Trigger Factor in the proper folding of
cytosolic proteins. S. cerevisiae Ssc1p is the major
HSP70 chaperone of the mitochondrial matrix, promoting
translocation of proteins from the cytosol, across the
inner membrane, to the matrix, and their subsequent
folding. Ssc1p interacts with Tim44, a peripheral inner
membrane protein associated with the TIM23 protein
translocase. It is also a subunit of the endoSceI
site-specific endoDNase and is required for full
endoSceI activity. Ssc1p plays roles in the import of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia). Ssc1 also participates in
translational regulation of cytochrome c oxidase (COX)
biogenesis by interacting with Mss51 and
Mss51-containing complexes.
Length = 377
Score = 352 bits (906), Expect = e-118
Identities = 150/246 (60%), Positives = 188/246 (76%), Gaps = 7/246 (2%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNP 60
IGIDLGTT SCVAV + ++I N +G RTTPS VAFT D ERL+G AK Q NP
Sbjct: 3 AVIGIDLGTTNSCVAVMEGKTPKVIENAEGARTTPSVVAFTKDGERLVGMPAKRQAVTNP 62
Query: 61 RNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMV 120
NT++ KRLIGR+FDDP++Q+D+K+ P+ +V S VE G K ++P +I + V
Sbjct: 63 ENTLYATKRLIGRRFDDPEVQKDIKNVPYKIVK-ASNGDAWVEAHG--KKYSPSQIGAFV 119
Query: 121 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 180
L KMKETAEAYLG V++AVITVPAYFND+QRQATKDAG IAGLNV+R++NEPTAAALAY
Sbjct: 120 LMKMKETAEAYLGKPVKNAVITVPAYFNDSQRQATKDAGQIAGLNVLRVINEPTAAALAY 179
Query: 181 GLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 240
GLDK K ++ + ++DLGGGTFD+SIL I +G +FEV+ST GDT LGGEDFDN L+ HL
Sbjct: 180 GLDK--KDDKVIAVYDLGGGTFDISILEIQKG-VFEVKSTNGDTFLGGEDFDNALLRHLV 236
Query: 241 EEFKRK 246
+EFK++
Sbjct: 237 KEFKKE 242
>gnl|CDD|212684 cd11734, Ssq1_like_NBD, Nucleotide-binding domain of Saccharomyces
cerevisiae Ssq1 and similar proteins. Ssq1p (also
called Stress-seventy subfamily Q protein 1, Ssc2p,
Ssh1p, mtHSP70 homolog) belongs to the heat shock
protein 70 (HSP70) family of chaperones that assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Typically, HSP70s
have a nucleotide-binding domain (NBD) and a
substrate-binding domain (SBD). The nucleotide sits in a
deep cleft formed between the two lobes of the NBD. The
two subdomains of each lobe change conformation between
ATP-bound, ADP-bound, and nucleotide-free states. ATP
binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
Hsp70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). S. cerevisiae Ssq1p is a mitochondrial
chaperone that is involved in iron-sulfur (Fe/S) center
biogenesis. Ssq1p plays a role in the maturation of
Yfh1p, a nucleus-encoded mitochondrial protein involved
in iron homeostasis (and a homolog of human frataxin,
implicated in the neurodegenerative disease,
Friedreich's ataxia).
Length = 373
Score = 325 bits (835), Expect = e-107
Identities = 142/245 (57%), Positives = 184/245 (75%), Gaps = 5/245 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNT 63
IGIDLGTT SCVAV + II N +G RTTPS V+FT T L+G+AAK Q A++P NT
Sbjct: 5 IGIDLGTTNSCVAVIDKTTPVIIENAEGKRTTPSIVSFTKTGILVGEAAKRQEALHPENT 64
Query: 64 VFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTK 123
F KRLIGR+F D ++Q+ MK + +V R + G K ++P +I+S VL K
Sbjct: 65 FFATKRLIGRQFKDVEVQRKMKVPYYKIVEGR-NGDAWIYTNG--KKYSPSQIASFVLKK 121
Query: 124 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 183
+K+TAEAYLG V +AVITVPAYFND+QRQATKDAG +AGL V+RI+NEPTAAALAYG+D
Sbjct: 122 LKKTAEAYLGKRVDEAVITVPAYFNDSQRQATKDAGTLAGLKVLRIINEPTAAALAYGID 181
Query: 184 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 243
K K +N+ ++DLGGGTFD+SIL+I++G +FEV++T GDT LGGEDFDN +V ++ +EF
Sbjct: 182 KR-KENKNIAVYDLGGGTFDISILNIEDG-VFEVKATNGDTMLGGEDFDNAIVQYIIKEF 239
Query: 244 KRKCR 248
KRK +
Sbjct: 240 KRKYK 244
Score = 47.1 bits (112), Expect = 1e-05
Identities = 19/35 (54%), Positives = 27/35 (77%), Gaps = 1/35 (2%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAIL 298
+Q+++Q F GK + S+NPDEAVA GAA+Q +IL
Sbjct: 340 IQNVVQEIF-GKKPSKSVNPDEAVALGAAIQGSIL 373
>gnl|CDD|223520 COG0443, DnaK, Molecular chaperone [Posttranslational modification,
protein turnover, chaperones].
Length = 579
Score = 322 bits (828), Expect = e-103
Identities = 143/248 (57%), Positives = 169/248 (68%), Gaps = 27/248 (10%)
Query: 1 MPAIGIDLGTTYSCVAVFQ-QGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAM 58
AIGIDLGTT S VAV + G ++I N +G R TPS VAF+ + E L+G AAK Q
Sbjct: 5 KKAIGIDLGTTNSVVAVMRGGGLPKVIENAEGERLTPSVVAFSKNGEVLVGQAAKRQAVD 64
Query: 59 NPRNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISS 118
NP NT+F KR IGR + KI VE G K + PEEIS+
Sbjct: 65 NPENTIFSIKRKIGRG--------------------SNGLKISVEVDG--KKYTPEEISA 102
Query: 119 MVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 178
M+LTK+KE AEAYLG V DAVITVPAYFNDAQRQATKDA IAGLNV+R++NEPTAAAL
Sbjct: 103 MILTKLKEDAEAYLGEKVTDAVITVPAYFNDAQRQATKDAARIAGLNVLRLINEPTAAAL 162
Query: 179 AYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSH 238
AYGLDK E+ VL++DLGGGTFDVS+L I +G +FEV +T GD HLGG+DFDN L+ +
Sbjct: 163 AYGLDK--GKEKTVLVYDLGGGTFDVSLLEIGDG-VFEVLATGGDNHLGGDDFDNALIDY 219
Query: 239 LAEEFKRK 246
L EFK K
Sbjct: 220 LVMEFKGK 227
Score = 283 bits (726), Expect = 2e-88
Identities = 140/263 (53%), Positives = 181/263 (68%), Gaps = 11/263 (4%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIET 323
VQ L++ FF GK SINPDEAVA GAA+QAA+LSG+ DVLL+DV PLSLGIET
Sbjct: 325 VQELVKEFF-GKEPEKSINPDEAVALGAAIQAAVLSGEVP----DVLLLDVIPLSLGIET 379
Query: 324 AGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIP 383
GGV T +IERNT IP K++Q F+T AD Q AV I VF+GER M DN LG F+L GIP
Sbjct: 380 LGGVRTPIIERNTTIPVKKSQEFSTAADGQTAVAIHVFQGEREMAADNKSLGRFELDGIP 439
Query: 384 PAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERY 443
PAPRGVP+I+VTFD+DANGILNVTAKD +GK Q+ITIK G LS EEI+RM+ DAE
Sbjct: 440 PAPRGVPQIEVTFDIDANGILNVTAKDLGTGKEQSITIKASSG-LSDEEIERMVEDAEAN 498
Query: 444 KDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNTLA 503
D+K +E + ARN E+ ++++++AL + K++E EK + E + L+
Sbjct: 499 AALDKKFRELVEARNEAESLIYSLEKALKEIV-KVSEEEKEKIEEAITDLEEALEG---- 553
Query: 504 DKEEYQDKLQQLQKSCMPLMSKM 526
+KEE + K+++LQ+ L K
Sbjct: 554 EKEEIKAKIEELQEVTQKLAEKK 576
>gnl|CDD|184038 PRK13410, PRK13410, molecular chaperone DnaK; Provisional.
Length = 668
Score = 308 bits (790), Expect = 6e-97
Identities = 136/246 (55%), Positives = 175/246 (71%), Gaps = 11/246 (4%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPRN 62
+GIDLGTT S VAV + GK +IAN +G RTTPS V FT D E L+G A+ Q+ +NP+N
Sbjct: 5 VGIDLGTTNSVVAVMEGGKPVVIANAEGMRTTPSVVGFTKDGELLVGQLARRQLVLNPQN 64
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGER--KTFAPEEISSMV 120
T ++ KR IGR++D+ + + K P+T+ R + V K R + FAPEE+S+M+
Sbjct: 65 TFYNLKRFIGRRYDE--LDPESKRVPYTI---RRNEQGNVRIKCPRLEREFAPEELSAMI 119
Query: 121 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 180
L K+ + A YLG V AVITVPAYFND+QRQAT+DAG IAGL V RI+NEPTAAALAY
Sbjct: 120 LRKLADDASRYLGEPVTGAVITVPAYFNDSQRQATRDAGRIAGLEVERILNEPTAAALAY 179
Query: 181 GLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 240
GLD+ + VL+FDLGGGTFDVS+L + G +FEV++T+GDT LGG DFD R+V LA
Sbjct: 180 GLDR--SSSQTVLVFDLGGGTFDVSLLEVGNG-VFEVKATSGDTQLGGNDFDKRIVDWLA 236
Query: 241 EEFKRK 246
E+F K
Sbjct: 237 EQFLEK 242
Score = 248 bits (635), Expect = 3e-74
Identities = 110/255 (43%), Positives = 160/255 (62%), Gaps = 10/255 (3%)
Query: 263 VVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 322
+VQ L++ + N ++NPDE VA GAA+QA IL+G+ ++D+LL+DVTPLSLG+E
Sbjct: 343 MVQQLVRTLI-PREPNQNVNPDEVVAVGAAIQAGILAGE----LKDLLLLDVTPLSLGLE 397
Query: 323 TAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGI 382
T GGVM KLI RNT IP +++ F+T +NQ +V I V++GER M DN LG F L+GI
Sbjct: 398 TIGGVMKKLIPRNTTIPVRRSDVFSTSENNQSSVEIHVWQGEREMASDNKSLGRFKLSGI 457
Query: 383 PPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 442
PPAPRGVP++ V FD+DANGIL V+A D ++G+ Q++TI+ LS++E++RMI +AE
Sbjct: 458 PPAPRGVPQVQVAFDIDANGILQVSATDRTTGREQSVTIQG-ASTLSEQEVNRMIQEAEA 516
Query: 443 YKDEDEKQKERISARNNLEAYVFNVKQALDDA----GNKLTESEKSRCREECDATLKWLD 498
DED +++ERI RN + ++ L DA G E ++ L+
Sbjct: 517 KADEDRRRRERIEKRNRALTLIAQAERRLRDAALEFGPYFAERQRRAVESAMRDVQDSLE 576
Query: 499 NNTLADKEEYQDKLQ 513
+ + + LQ
Sbjct: 577 QDDDRELDLAVADLQ 591
>gnl|CDD|212670 cd10228, HSPA4_like_NDB, Nucleotide-binding domain of 105/110 kDa
heat shock proteins including HSPA4 and similar
proteins. This subgroup includes the human proteins,
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1), HSPA4L (also known as 70-kDa heat shock
protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3),
Saccharomyces cerevisiae Sse1p and Sse2p, and a sea
urchin sperm receptor. It belongs to the 105/110 kDa
heat shock protein (HSP105/110) subfamily of the
HSP70-like family, and includes proteins believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 381
Score = 298 bits (766), Expect = 9e-97
Identities = 126/250 (50%), Positives = 169/250 (67%), Gaps = 6/250 (2%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPR 61
+GID G S VAV ++G ++++AN+ NR TPS V+F + +RLIG+AAKNQ N +
Sbjct: 1 SVVGIDFGNLNSVVAVARKGGIDVVANEYSNRETPSLVSFGEKQRLIGEAAKNQAISNFK 60
Query: 62 NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRS-KPKIQVEFKGERKTFAPEEISSMV 120
NTV + KRLIGRKFDDP++Q+++K PF VV K I+V + GE K F+PE++ +M+
Sbjct: 61 NTVRNFKRLIGRKFDDPEVQKELKFLPFKVVELPDGKVGIKVNYLGEEKVFSPEQVLAML 120
Query: 121 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 180
LTK+KE AE L V D VI+VP+YF DAQR+A DA IAGLN +R++NE TA ALAY
Sbjct: 121 LTKLKEIAEKALKGKVTDCVISVPSYFTDAQRRALLDAAQIAGLNCLRLMNETTATALAY 180
Query: 181 GLDKNLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 236
G+ K E RNV D+G + VSI++ ++G L +V STA D +LGG DFD L
Sbjct: 181 GIYKTDLPEEEKPRNVAFVDIGHSSTQVSIVAFNKGKL-KVLSTAFDRNLGGRDFDEALF 239
Query: 237 SHLAEEFKRK 246
H A+EFK K
Sbjct: 240 EHFAKEFKEK 249
Score = 44.8 bits (107), Expect = 8e-05
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 299
V+ L+ F GK L+ ++N DEAVA G A+Q A+LS
Sbjct: 347 VKELIAKVF-GKELSTTLNADEAVARGCALQCAMLS 381
>gnl|CDD|240403 PTZ00400, PTZ00400, DnaK-type molecular chaperone; Provisional.
Length = 663
Score = 304 bits (781), Expect = 1e-95
Identities = 134/244 (54%), Positives = 183/244 (75%), Gaps = 7/244 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPRN 62
+GIDLGTT SCVA+ + + ++I N +G RTTPS VAFT+ +RL+G AK Q NP N
Sbjct: 44 VGIDLGTTNSCVAIMEGSQPKVIENSEGMRTTPSVVAFTEDGQRLVGIVAKRQAVTNPEN 103
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
TVF KRLIGR++D+ +++ K P+ +V S +E +G++ ++P +I + VL
Sbjct: 104 TVFATKRLIGRRYDEDATKKEQKILPYKIVRA-SNGDAWIEAQGKK--YSPSQIGAFVLE 160
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
KMKETAE+YLG V+ AVITVPAYFND+QRQATKDAG IAGL+V+RI+NEPTAAALA+G+
Sbjct: 161 KMKETAESYLGRKVKQAVITVPAYFNDSQRQATKDAGKIAGLDVLRIINEPTAAALAFGM 220
Query: 183 DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 242
DKN + + ++DLGGGTFD+SIL I G +FEV++T G+T LGGEDFD R++++L E
Sbjct: 221 DKN--DGKTIAVYDLGGGTFDISILEI-LGGVFEVKATNGNTSLGGEDFDQRILNYLIAE 277
Query: 243 FKRK 246
FK++
Sbjct: 278 FKKQ 281
Score = 287 bits (736), Expect = 5e-89
Identities = 130/284 (45%), Positives = 188/284 (66%), Gaps = 9/284 (3%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIET 323
V ++ F GK + +NPDEAVA GAA+QA +L G+ I+D+LL+DVTPLSLGIET
Sbjct: 383 VSETVKKIF-GKEPSKGVNPDEAVAMGAAIQAGVLKGE----IKDLLLLDVTPLSLGIET 437
Query: 324 AGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIP 383
GGV T+LI RNT IP K++Q F+T ADNQ V I+VF+GER M DN LLG FDL GIP
Sbjct: 438 LGGVFTRLINRNTTIPTKKSQVFSTAADNQTQVGIKVFQGEREMAADNKLLGQFDLVGIP 497
Query: 384 PAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERY 443
PAPRGVP+I+VTFD+DANGI+N++A D S+GK Q ITI++ G LS EEI++M+ +AE Y
Sbjct: 498 PAPRGVPQIEVTFDVDANGIMNISAVDKSTGKKQEITIQSSGG-LSDEEIEKMVKEAEEY 556
Query: 444 KDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNTLA 503
K++DEK+KE + A+N E +++V++ L D +K+++++K +++ L +
Sbjct: 557 KEQDEKKKELVDAKNEAETLIYSVEKQLSDLKDKISDADKDELKQKITKLRSTLSSE--- 613
Query: 504 DKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGPTVEE 547
D + +DK +QLQ++ + + + + E
Sbjct: 614 DVDSIKDKTKQLQEASWKISQQAYKQGNSDNQQSEQSTNSEESE 657
>gnl|CDD|214360 CHL00094, dnaK, heat shock protein 70.
Length = 621
Score = 303 bits (777), Expect = 2e-95
Identities = 140/244 (57%), Positives = 175/244 (71%), Gaps = 7/244 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPRN 62
+GIDLGTT S VAV + GK +I N +G RTTPS VA+T + L+G AK Q +NP N
Sbjct: 5 VGIDLGTTNSVVAVMEGGKPTVIPNAEGFRTTPSIVAYTKKGDLLVGQIAKRQAVINPEN 64
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
T + KR IGRKF + I ++ K + V D S I++E K F+PEEIS+ VL
Sbjct: 65 TFYSVKRFIGRKFSE--ISEEAKQVSYKVKTD-SNGNIKIECPALNKDFSPEEISAQVLR 121
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
K+ E A YLG +V AVITVPAYFND+QRQATKDAG IAGL V+RI+NEPTAA+LAYGL
Sbjct: 122 KLVEDASKYLGETVTQAVITVPAYFNDSQRQATKDAGKIAGLEVLRIINEPTAASLAYGL 181
Query: 183 DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 242
DK K +L+FDLGGGTFDVSIL + +G +FEV ST+GDTHLGG+DFD ++V+ L +E
Sbjct: 182 DK--KNNETILVFDLGGGTFDVSILEVGDG-VFEVLSTSGDTHLGGDDFDKKIVNWLIKE 238
Query: 243 FKRK 246
FK+K
Sbjct: 239 FKKK 242
Score = 276 bits (708), Expect = 3e-85
Identities = 124/258 (48%), Positives = 178/258 (68%), Gaps = 11/258 (4%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIET 323
+Q L++ GK N S+NPDE VA GAAVQA +L+G+ ++D+LL+DVTPLSLG+ET
Sbjct: 344 IQELVKKLL-GKKPNQSVNPDEVVAIGAAVQAGVLAGE----VKDILLLDVTPLSLGVET 398
Query: 324 AGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIP 383
GGVMTK+I RNT IP K+++ F+T DNQ V I V +GER + KDN LGTF L GIP
Sbjct: 399 LGGVMTKIIPRNTTIPTKKSEVFSTAVDNQTNVEIHVLQGERELAKDNKSLGTFRLDGIP 458
Query: 384 PAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERY 443
PAPRGVP+I+VTFD+DANGIL+VTAKD +GK Q+ITI+ L K+E++RM+ +AE+
Sbjct: 459 PAPRGVPQIEVTFDIDANGILSVTAKDKGTGKEQSITIQG-ASTLPKDEVERMVKEAEKN 517
Query: 444 KDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNTLA 503
ED++++E+I +N E+ + ++ L + +K++E +K E+ + +K L
Sbjct: 518 AAEDKEKREKIDLKNQAESLCYQAEKQLKELKDKISEEKK----EKIENLIKKLRQALQN 573
Query: 504 DK-EEYQDKLQQLQKSCM 520
D E + L++LQK+ M
Sbjct: 574 DNYESIKSLLEELQKALM 591
>gnl|CDD|184039 PRK13411, PRK13411, molecular chaperone DnaK; Provisional.
Length = 653
Score = 301 bits (773), Expect = 1e-94
Identities = 138/244 (56%), Positives = 178/244 (72%), Gaps = 8/244 (3%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPRN 62
IGIDLGTT SCVAV + GK +I N +G RTTPS V F + +RL+G AK Q N N
Sbjct: 5 IGIDLGTTNSCVAVLEGGKPIVIPNSEGGRTTPSIVGFGKSGDRLVGQLAKRQAVTNAEN 64
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
TV+ KR IGR++DD +++ P+T V R + V+ +G + + P+EIS+M+L
Sbjct: 65 TVYSIKRFIGRRWDD--TEEERSRVPYTCVKGRDD-TVNVQIRG--RNYTPQEISAMILQ 119
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
K+K+ AEAYLG V AVITVPAYF DAQRQATKDAG IAGL V+RI+NEPTAAALAYGL
Sbjct: 120 KLKQDAEAYLGEPVTQAVITVPAYFTDAQRQATKDAGTIAGLEVLRIINEPTAAALAYGL 179
Query: 183 DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 242
DK + E+ +L+FDLGGGTFDVSIL + +G +FEV++TAG+ HLGG+DFDN +V L E
Sbjct: 180 DKQDQ-EQLILVFDLGGGTFDVSILQLGDG-VFEVKATAGNNHLGGDDFDNCIVDWLVEN 237
Query: 243 FKRK 246
F+++
Sbjct: 238 FQQQ 241
Score = 275 bits (706), Expect = 1e-84
Identities = 120/275 (43%), Positives = 182/275 (66%), Gaps = 6/275 (2%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIET 323
VQ +Q FF GK + S+NPDEAVA GAA+QA +L G+ ++D+LL+DVTPLSLGIET
Sbjct: 343 VQEAIQKFFGGKQPDRSVNPDEAVALGAAIQAGVLGGE----VKDLLLLDVTPLSLGIET 398
Query: 324 AGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIP 383
G V TK+IERNT IP ++Q F+T D Q +V I V +GERAM KDN LG F LTGIP
Sbjct: 399 LGEVFTKIIERNTTIPTSKSQVFSTATDGQTSVEIHVLQGERAMAKDNKSLGKFLLTGIP 458
Query: 384 PAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERY 443
PAPRGVP+I+V+F++D NGIL V+A+D +G+ Q+I I N G LS EI+RM +AE+Y
Sbjct: 459 PAPRGVPQIEVSFEIDVNGILKVSAQDQGTGREQSIRITN-TGGLSSNEIERMRQEAEKY 517
Query: 444 KDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNTLA 503
+ED ++K+ I +N ++ +++ + L + G ++E K R ++ + L + +
Sbjct: 518 AEEDRRRKQLIELKNQADSLLYSYESTLKENGELISEELKQRAEQKVEQLEAALTDPNI- 576
Query: 504 DKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDM 538
EE + +L++ Q++ + + ++++ G + +
Sbjct: 577 SLEELKQQLEEFQQALLAIGAEVYQQGGSQTTDTV 611
>gnl|CDD|212678 cd10236, HscA_like_NBD, Nucleotide-binding domain of HscA and
similar proteins. Escherichia coli HscA (heat shock
cognate protein A, also called Hsc66), belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). HscA's partner J-domain protein is HscB;
it does not appear to require a NEF, and has been shown
to be induced by cold-shock. The HscA-HscB
chaperone/co-chaperone pair is involved in [Fe-S]
cluster assembly.
Length = 355
Score = 273 bits (700), Expect = 3e-87
Identities = 114/247 (46%), Positives = 154/247 (62%), Gaps = 9/247 (3%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRN 62
AIGIDLGTT S VA GKV+I+ ++ G PS V + D +G A +P+N
Sbjct: 2 AIGIDLGTTNSLVASVLSGKVKILPDENGRVLLPSVVHYGDGGISVGHDALKLAISDPKN 61
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
T+ KRL+G+ +D I++ + P + F ++ T P E+S+ +L
Sbjct: 62 TISSVKRLMGKSIED--IKKSFPYLPILEGKNGGII----LFHTQQGTVTPVEVSAEILK 115
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
+KE AE LG ++ AVITVPAYF+DAQRQATKDA +AGLNV+R++NEPTAAALAYGL
Sbjct: 116 ALKERAEKSLGGEIKGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAALAYGL 175
Query: 183 DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 242
DK K E ++DLGGGTFDVSIL + +G +FEV +T GD+ LGG+DFD L L ++
Sbjct: 176 DK--KKEGIYAVYDLGGGTFDVSILKLHKG-VFEVLATGGDSALGGDDFDQLLAELLLKK 232
Query: 243 FKRKCRS 249
+ K
Sbjct: 233 YGLKSLI 239
>gnl|CDD|212677 cd10235, HscC_like_NBD, Nucleotide-binding domain of Escherichia
coli HscC and similar proteins. This subfamily
includes Escherichia coli HscC (also called heat shock
cognate protein C, Hsc62, or YbeW) and the the putative
DnaK-like protein Escherichia coli ECs0689. It belongs
to the heat shock protein 70 (Hsp70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, Hsp70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). Two genes in the
vicinity of the HscC gene code for potential
cochaperones: J-domain containing proteins, DjlB/YbeS
and DjlC/YbeV. HscC and its co-chaperone partners may
play a role in the SOS DNA damage response. HscC does
not appear to require a NEF.
Length = 339
Score = 270 bits (692), Expect = 3e-86
Identities = 113/253 (44%), Positives = 147/253 (58%), Gaps = 34/253 (13%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTER-LIGDAAKNQVAMNPRN 62
IGIDLGTT S VAV+Q GK +I N G TPS V+ + L+G AA+ ++ +P
Sbjct: 1 IGIDLGTTNSLVAVWQDGKARLIPNALGEYLTPSVVSVDEDGEILVGKAARERLITHPDL 60
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
T KR +G +++ ++ F EE+SS+VL
Sbjct: 61 TAASFKRFMGTD---------------------------KKYRLGKREFRAEELSSLVLR 93
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
+KE AEAYLG V +AVI+VPAYFND QR+ATK AG +AGL V R++NEPTAAALAYGL
Sbjct: 94 SLKEDAEAYLGEPVTEAVISVPAYFNDEQRKATKRAGELAGLKVERLINEPTAAALAYGL 153
Query: 183 DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 242
E L+FDLGGGTFDVS+L + +G + EVR++AGD +LGGEDF L E
Sbjct: 154 HDK-DEETKFLVFDLGGGTFDVSVLELFDG-VMEVRASAGDNYLGGEDFTRALA----EA 207
Query: 243 FKRKCRSASDVGD 255
F +K + D
Sbjct: 208 FLKKHGLDFEKLD 220
Score = 43.6 bits (104), Expect = 1e-04
Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 263 VVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 296
VV+ L+ F G+ + +NPDE VA GAA+QA
Sbjct: 307 VVRKLVSRLF-GRFPLVHLNPDEVVALGAAIQAG 339
>gnl|CDD|215618 PLN03184, PLN03184, chloroplast Hsp70; Provisional.
Length = 673
Score = 277 bits (710), Expect = 4e-85
Identities = 130/243 (53%), Positives = 166/243 (68%), Gaps = 7/243 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPRN 62
+GIDLGTT S VA + GK I+ N +G RTTPS VA+T +RL+G AK Q +NP N
Sbjct: 42 VGIDLGTTNSAVAAMEGGKPTIVTNAEGQRTTPSVVAYTKNGDRLVGQIAKRQAVVNPEN 101
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
T F KR IGRK + + ++ K + VV D ++++ K FA EEIS+ VL
Sbjct: 102 TFFSVKRFIGRKMSE--VDEESKQVSYRVVRD-ENGNVKLDCPAIGKQFAAEEISAQVLR 158
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
K+ + A +L V AVITVPAYFND+QR ATKDAG IAGL V+RI+NEPTAA+LAYG
Sbjct: 159 KLVDDASKFLNDKVTKAVITVPAYFNDSQRTATKDAGRIAGLEVLRIINEPTAASLAYGF 218
Query: 183 DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 242
+K K +L+FDLGGGTFDVS+L + +G +FEV ST+GDTHLGG+DFD R+V LA
Sbjct: 219 EK--KSNETILVFDLGGGTFDVSVLEVGDG-VFEVLSTSGDTHLGGDDFDKRIVDWLASN 275
Query: 243 FKR 245
FK+
Sbjct: 276 FKK 278
Score = 250 bits (640), Expect = 5e-75
Identities = 118/280 (42%), Positives = 181/280 (64%), Gaps = 11/280 (3%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIET 323
VQ L++ GK N+++NPDE VA GAAVQA +L+G+ S D++L+DVTPLSLG+ET
Sbjct: 381 VQELVKKL-TGKDPNVTVNPDEVVALGAAVQAGVLAGEVS----DIVLLDVTPLSLGLET 435
Query: 324 AGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIP 383
GGVMTK+I RNT +P +++ F+T AD Q +V I V +GER +DN LG+F L GIP
Sbjct: 436 LGGVMTKIIPRNTTLPTSKSEVFSTAADGQTSVEINVLQGEREFVRDNKSLGSFRLDGIP 495
Query: 384 PAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERY 443
PAPRGVP+I+V FD+DANGIL+V+A D +GK Q+ITI L K+E++RM+ +AE++
Sbjct: 496 PAPRGVPQIEVKFDIDANGILSVSATDKGTGKKQDITITG-ASTLPKDEVERMVQEAEKF 554
Query: 444 KDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNTLA 503
ED+++++ + +N ++ V+ ++ L + G+K+ K E+ +A LK L + +
Sbjct: 555 AKEDKEKRDAVDTKNQADSVVYQTEKQLKELGDKVPADVK----EKVEAKLKELKDAIAS 610
Query: 504 DK-EEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGG 542
++ +D + L + M + ++ G AG P G
Sbjct: 611 GSTQKMKDAMAALNQEVMQIGQSLYNQPGAGGAGPAPGGE 650
>gnl|CDD|140213 PTZ00186, PTZ00186, heat shock 70 kDa precursor protein;
Provisional.
Length = 657
Score = 273 bits (700), Expect = 5e-84
Identities = 136/242 (56%), Positives = 177/242 (73%), Gaps = 5/242 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNT 63
IG+DLGTTYSCVA K ++ N +G RTTPS VAF +E+L+G AAK Q NP++T
Sbjct: 30 IGVDLGTTYSCVATMDGDKARVLENSEGFRTTPSVVAFKGSEKLVGLAAKRQAITNPQST 89
Query: 64 VFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTK 123
+ KRLIGR+F+D IQ+D+K+ P+ +V R+ G K ++P +I + VL K
Sbjct: 90 FYAVKRLIGRRFEDEHIQKDIKNVPYKIV--RAGNGDAWVQDGNGKQYSPSQIGAFVLEK 147
Query: 124 MKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD 183
MKETAE +LGH V +AV+T PAYFNDAQRQATKDAG IAGLNV+R+VNEPTAAALAYG+D
Sbjct: 148 MKETAENFLGHKVSNAVVTCPAYFNDAQRQATKDAGTIAGLNVIRVVNEPTAAALAYGMD 207
Query: 184 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 243
K + + ++DLGGGTFD+S+L I G +FEV++T GDTHLGGEDFD L ++ EEF
Sbjct: 208 KT--KDSLIAVYDLGGGTFDISVLEI-AGGVFEVKATNGDTHLGGEDFDLALSDYILEEF 264
Query: 244 KR 245
++
Sbjct: 265 RK 266
Score = 225 bits (574), Expect = 1e-65
Identities = 121/266 (45%), Positives = 175/266 (65%), Gaps = 7/266 (2%)
Query: 272 FCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKL 331
F K +NPDEAVA GAA +L GD ++ ++L+DVTPLSLGIET GGV T++
Sbjct: 376 FFQKDPFRGVNPDEAVALGAATLGGVLRGD----VKGLVLLDVTPLSLGIETLGGVFTRM 431
Query: 332 IERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPK 391
I +NT IP K++QTF+T ADNQ V I+VF+GER M DN ++G FDL GIPPAPRGVP+
Sbjct: 432 IPKNTTIPTKKSQTFSTAADNQTQVGIKVFQGEREMAADNQMMGQFDLVGIPPAPRGVPQ 491
Query: 392 IDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQK 451
I+VTFD+DANGI +VTAKD ++GK+QNITI + G LSKE+I++MI D+E++ + D ++
Sbjct: 492 IEVTFDIDANGICHVTAKDKATGKTQNITITANGG-LSKEQIEQMIRDSEQHAEADRVKR 550
Query: 452 ERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDK 511
E + RNN E + ++ L + ++++EK + K ++N +A K++
Sbjct: 551 ELVEVRNNAETQLTTAERQLGE-WKYVSDAEKENVKTLVAELRKAMENPNVA-KDDLAAA 608
Query: 512 LQQLQKSCMPLMSKMHGGAGGASAGD 537
+LQK+ M + A A++G
Sbjct: 609 TDKLQKAVMECGRTEYQQAAAANSGS 634
>gnl|CDD|235360 PRK05183, hscA, chaperone protein HscA; Provisional.
Length = 616
Score = 264 bits (677), Expect = 8e-81
Identities = 111/241 (46%), Positives = 157/241 (65%), Gaps = 10/241 (4%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRN 62
A+GIDLGTT S VA + G+ E++ ++QG PS V + + +G A+ A +P+N
Sbjct: 21 AVGIDLGTTNSLVATVRSGQAEVLPDEQGRVLLPSVVRYLEDGIEVGYEARANAAQDPKN 80
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFT-VVNDRSKPKIQVEFKGERKTFAPEEISSMVL 121
T+ KR +GR D IQQ H P+ V ++ P I+ G K+ P E+S+ +L
Sbjct: 81 TISSVKRFMGRSLAD--IQQRYPHLPYQFVASENGMPLIRTAQ-GL-KS--PVEVSAEIL 134
Query: 122 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG 181
+++ AE LG + AVITVPAYF+DAQRQATKDA +AGLNV+R++NEPTAAA+AYG
Sbjct: 135 KALRQRAEETLGGELDGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYG 194
Query: 182 LDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241
LD E + ++DLGGGTFD+SIL + +G +FEV +T GD+ LGG+DFD+ L + E
Sbjct: 195 LDSG--QEGVIAVYDLGGGTFDISILRLSKG-VFEVLATGGDSALGGDDFDHLLADWILE 251
Query: 242 E 242
+
Sbjct: 252 Q 252
Score = 205 bits (524), Expect = 9e-59
Identities = 93/226 (41%), Positives = 144/226 (63%), Gaps = 12/226 (5%)
Query: 263 VVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIE 322
+V+ + FF G++ SI+PD+ VA GAA+QA IL+G++ + D+LL+DV PLSLG+E
Sbjct: 343 LVREAVGEFF-GRTPLTSIDPDKVVAIGAAIQADILAGNKPDS--DMLLLDVIPLSLGLE 399
Query: 323 TAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGI 382
T GG++ K+I RNT IP + Q FTT+ D Q A+ I V +GER + D L F+L GI
Sbjct: 400 TMGGLVEKIIPRNTTIPVARAQEFTTFKDGQTAMAIHVVQGERELVADCRSLARFELRGI 459
Query: 383 PPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAER 442
PP G +I VTF +DA+G+L+VTA + S+G +I +K G L+ +EI RM+ D+
Sbjct: 460 PPMAAGAARIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDDEIARMLKDSMS 518
Query: 443 YKDEDEKQK----ERISARNNLEAYVFNVKQALDDAGNKLTESEKS 484
+ +ED + + +++ A LEA ++ AL G+ L+ +E++
Sbjct: 519 HAEEDMQARALAEQKVEAERVLEA----LQAALAADGDLLSAAERA 560
>gnl|CDD|212680 cd10238, HSPA14-like_NBD, Nucleotide-binding domain of human HSPA14
and similar proteins. Human HSPA14 (also known as
70-kDa heat shock protein 14, HSP70L1, HSP70-4; the gene
encoding HSPA14 maps to 10p13), is ribosome-associated
and belongs to the heat shock protein 70 (HSP70) family
of chaperones that assist in protein folding and
assembly, and can direct incompetent "client" proteins
towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). HSPA14
interacts with the J-protein MPP11 to form the mammalian
ribosome-associated complex (mRAC). HSPA14 participates
in a pathway along with Nijmegen breakage syndrome 1
(NBS1, also known as p85 or nibrin), heat shock
transcription factor 4b (HSF4b), and HSPA4 (belonging to
a different subfamily), that induces tumor migration,
invasion, and transformation. HSPA14 is a potent T
helper cell (Th1) polarizing adjuvant that contributes
to antitumor immune responses.
Length = 375
Score = 244 bits (625), Expect = 6e-76
Identities = 101/245 (41%), Positives = 162/245 (66%), Gaps = 2/245 (0%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRN 62
AIG+ G T +C+AV++ G+ +++AND G+R TP+ VAFTDTE ++G AAK N N
Sbjct: 2 AIGVHFGNTSACLAVYKDGRADVVANDAGDRVTPAVVAFTDTEVIVGLAAKQGRIRNAAN 61
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
T+ K+++GR + DP Q++ ++ +PK ++ + + K +P+E++ ++
Sbjct: 62 TIVKNKQILGRSYSDPFKQKEKTESSCKIIEKDGEPKYEIFTEEKTKHVSPKEVAKLIFK 121
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
KMKE A++ LG +D VITVP YF++ Q+ A ++A AG NV+RI++EP+AAALAYG+
Sbjct: 122 KMKEIAQSALGSDSKDVVITVPVYFSEKQKLALREAAEEAGFNVLRIIHEPSAAALAYGI 181
Query: 183 DKNLK-GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241
++ G+ VL++ LGG + DV+IL ++ G ++ V +T+ D +LGGE F L +LA
Sbjct: 182 GQDSPTGKSYVLVYRLGGTSTDVTILRVNSG-MYRVLATSTDDNLGGESFTETLSQYLAN 240
Query: 242 EFKRK 246
EFKRK
Sbjct: 241 EFKRK 245
Score = 42.4 bits (100), Expect = 5e-04
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 296
+Q L+++ F + SI+PDE +A GAA QA
Sbjct: 343 LQQLIKDLFPSVEVLNSISPDEVIAIGAAKQAG 375
>gnl|CDD|212679 cd10237, HSPA13-like_NBD, Nucleotide-binding domain of human HSPA13
and similar proteins. Human HSPA13 (also called 70-kDa
heat shock protein 13, STCH, "stress 70 protein
chaperone, microsome-associated, 60kD", "stress 70
protein chaperone, microsome-associated, 60kDa"; the
gene encoding HSPA13 maps to 21q11.1) belongs to the
heat shock protein 70 (HSP70) family of chaperones that
assist in protein folding and assembly and can direct
incompetent "client" proteins towards degradation.
Typically, HSP70s have a nucleotide-binding domain (NBD)
and a substrate-binding domain (SBD). The nucleotide
sits in a deep cleft formed between the two lobes of the
NBD. The two subdomains of each lobe change conformation
between ATP-bound, ADP-bound, and nucleotide-free
states. ATP binding opens up the substrate-binding site;
substrate-binding increases the rate of ATP hydrolysis.
HSP70 chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). STCH contains an NBD but lacks an SBD.
STCH may function to regulate cell proliferation and
survival, and modulate the TRAIL-mediated cell death
pathway. The HSPA13 gene is a candidate stomach cancer
susceptibility gene; a mutation in the NBD coding region
of HSPA13 has been identified in stomach cancer cells.
The NBD of HSPA13 interacts with the ubiquitin-like
proteins Chap1 and Chap2, implicating HSPA13 in
regulating cell cycle and cell death events. HSPA13 is
induced by the Ca2+ ionophore A23187.
Length = 417
Score = 245 bits (627), Expect = 8e-76
Identities = 113/246 (45%), Positives = 158/246 (64%), Gaps = 5/246 (2%)
Query: 4 IGIDLGTTYSCVAVFQ--QGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPR 61
IGIDLGTTYS V V+Q G+ +II ++ G ++ PS VAFT L+G A Q NP+
Sbjct: 23 IGIDLGTTYSSVGVYQAGTGETDIIPDENGRKSIPSVVAFTPGTVLVGYKAVEQAEHNPQ 82
Query: 62 NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVND-RSKPKIQVEFKGERKTFAPEEISSMV 120
NT++DAKR IG+ F +++ + + F V + R+ E KT PEEI S +
Sbjct: 83 NTIYDAKRFIGKIFTKEELEFESDRYRFKVKINSRNGAFFFSVLTNETKTVTPEEIGSRL 142
Query: 121 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 180
+ K+++ AE YLG V AVI+VPA F++ QR AT A +AGL V+R++NEPTAAALAY
Sbjct: 143 ILKLRKMAEKYLGTPVGKAVISVPAEFDEKQRNATVKAANLAGLEVLRVINEPTAAALAY 202
Query: 181 GLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLA 240
GL K + NVL+ DLGGGT DVS+L+ +G +F R+ AG+ LGG+DF+ RL+ +L
Sbjct: 203 GLHKK-QDVFNVLVVDLGGGTLDVSLLNK-QGGMFLTRAMAGNNRLGGQDFNQRLLQYLY 260
Query: 241 EEFKRK 246
++ K
Sbjct: 261 QKIYEK 266
Score = 43.6 bits (103), Expect = 2e-04
Identities = 19/47 (40%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD---QSSAIQ 307
++ ++ FF GK N S++P+ AV G A+QA I+ G Q SAI+
Sbjct: 368 IRQVIGRFF-GKDPNTSVDPELAVVTGVAIQAGIIGGSWPLQVSAIE 413
>gnl|CDD|212689 cd11739, HSPH1_NBD, Nucleotide-binding domain of HSPH1. Human
HSPH1 (also known as heat shock 105kDa/110kDa protein 1,
HSP105; HSP105A; HSP105B; NY-CO-25; the human HSPH1 gene
maps to 13q12.3) suppresses the aggregation of denatured
proteins caused by heat shock in vitro, and may
substitute for HSP70 family proteins to suppress the
aggregation of denatured proteins in cells under severe
stress. It reduces the protein aggregation and
cytotoxicity associated with Polyglutamine (PolyQ)
diseases, including Huntington's disease, which are a
group of inherited neurodegenerative disorders sharing
the characteristic feature of having insoluble protein
aggregates in neurons. The expression of HSPH1 is
elevated in various malignant tumors, including
malignant melanoma, and there is a direct correlation
between HSPH1 expression and B-cell non-Hodgkin
lymphomas (B-NHLs) aggressiveness and proliferation.
HSPH1 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 203 bits (517), Expect = 5e-60
Identities = 101/249 (40%), Positives = 151/249 (60%), Gaps = 7/249 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNT 63
+G D+G +AV + G +E +AN+ +R TPS ++F R IG AAKNQ + NT
Sbjct: 3 VGFDVGFQSCYIAVARAGGIETVANEFSDRCTPSVISFGSKNRTIGVAAKNQQITHANNT 62
Query: 64 VFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLT 122
V + KR GR F+DP +Q++ ++ + +V ++V + GE F+ E+I++M+LT
Sbjct: 63 VSNFKRFHGRAFNDPFVQKEKENLSYDLVPLKNGGVGVKVMYMGEEHLFSVEQITAMLLT 122
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
K+KETAE L V D VI+VP++F DA+R++ DA I GLN +R++N+ TA AL YG+
Sbjct: 123 KLKETAENNLKKPVTDCVISVPSFFTDAERRSVLDAAQIVGLNCLRLMNDMTAVALNYGI 182
Query: 183 DK-NLKGE----RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS 237
K +L R V+ D+G F VS + ++G L +V TA D LGG++FD +LV
Sbjct: 183 YKQDLPSLDEKPRIVVFVDMGHSAFQVSACAFNKGKL-KVLGTAFDPFLGGKNFDEKLVE 241
Query: 238 HLAEEFKRK 246
H EFK K
Sbjct: 242 HFCAEFKTK 250
Score = 35.3 bits (81), Expect = 0.074
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 299
V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 349 VKERIAKFF-GKDVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212672 cd10230, HYOU1-like_NBD, Nucleotide-binding domain of human HYOU1
and similar proteins. This subgroup includes human
HYOU1 (also known as human hypoxia up-regulated 1,
GRP170; HSP12A; ORP150; GRP-170; ORP-150; the human
HYOU1 gene maps to11q23.1-q23.3) and Saccharomyces
cerevisiae Lhs1p (also known as Cer1p, SsI1). Mammalian
HYOU1 functions as a nucleotide exchange factor (NEF)
for HSPA5 (alos known as BiP, Grp78 or HspA5) and may
also function as a HSPA5-independent chaperone. S.
cerevisiae Lhs1p, does not have a detectable endogenous
ATPase activity like canonical HSP70s, but functions as
a NEF for Kar2p; it's interaction with Kar2p is
stimulated by nucleotide-binding. In addition, Lhs1p has
a nucleotide-independent holdase activity that prevents
heat-induced aggregation of proteins in vitro. This
subgroup belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as NEFs, to
remove ADP from their HSP70 chaperone partners during
the ATP hydrolysis cycle. HSP70 chaperones assist in
protein folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 388
Score = 202 bits (515), Expect = 1e-59
Identities = 94/257 (36%), Positives = 136/257 (52%), Gaps = 15/257 (5%)
Query: 4 IGIDLGTTYSCVAVFQQGK-VEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRN 62
+GIDLG+ + VA+ + G EI+ N++ R TPS VAF ERL G A + A P+
Sbjct: 1 LGIDLGSEWIKVALVKPGVPFEIVLNEESKRKTPSAVAFKGGERLFGSDASSLAARFPQQ 60
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTV-VNDRSKPKIQVEFKGERKTFAPEEISSMVL 121
K L+G+ DDP + P V D S+ + + + ++ EE+ +M+L
Sbjct: 61 VYLHLKDLLGKPADDPSVSLYQSRHPLPYLVVDESRGTVAFKISDG-EEYSVEELVAMIL 119
Query: 122 TKMKETAEAYLG-HSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 180
K+ AE + V+D VITVP YF AQRQA DA +AGLNV+ +VN+ TAAAL Y
Sbjct: 120 NYAKKLAEEHAKEAPVKDVVITVPPYFTQAQRQALLDAAELAGLNVLALVNDGTAAALNY 179
Query: 181 GLDKNLKGER--NVLIFDLGGGTFDVSILSID--------EGAL-FEVRSTAGDTHLGGE 229
LD+ + + VL +D+G G+ +++ + EV D LGG
Sbjct: 180 ALDRRFENNKPQYVLFYDMGAGSTTATVVEFSPVEEKEKSKTVPQIEVLGVGWDRTLGGR 239
Query: 230 DFDNRLVSHLAEEFKRK 246
+FD RL HLA+EF+ K
Sbjct: 240 EFDLRLADHLAKEFEEK 256
Score = 37.2 bits (87), Expect = 0.020
Identities = 15/33 (45%), Positives = 16/33 (48%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 296
VQ L K L +N DEA A GAA AA
Sbjct: 356 VQEELSEAVGKKKLGKHLNADEAAAMGAAYYAA 388
>gnl|CDD|212674 cd10232, ScSsz1p_like_NBD, Nucleotide-binding domain of
Saccharmomyces cerevisiae Ssz1pp and similar proteins.
Saccharomyces cerevisiae Ssz1p (also known as
/Pdr13p/YHR064C) belongs to the heat shock protein 70
(HSP70) family of chaperones that assist in protein
folding and assembly and can direct incompetent "client"
proteins towards degradation. Typically, HSP70s have a
nucleotide-binding domain (NBD) and a substrate-binding
domain (SBD). The nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is regulated by various co-chaperones: J-domain
proteins and nucleotide exchange factors (NEFs). Some
family members are not chaperones but rather, function
as NEFs for their Hsp70 partners, while other family
members function as both chaperones and NEFs. Ssz1 does
not function as a chaperone; it facilitates the
interaction between the HSP70 Ssb protein and its
partner J-domain protein Zuo1 (also known as zuotin) on
the ribosome. Ssz1 is found in a stable heterodimer
(called RAC, ribosome associated complex) with Zuo1.
Zuo1 can only stimulate the ATPase activity of Ssb, when
it is in complex with Ssz1. Ssz1 binds ATP but neither
nucleotide-binding, hydrolysis, or its SBD, is needed
for its in vivo function.
Length = 386
Score = 194 bits (494), Expect = 1e-56
Identities = 85/250 (34%), Positives = 138/250 (55%), Gaps = 6/250 (2%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPR 61
IGI+ G TYS +A QGK ++IAN+ G R PS +++ + G+ AK Q+ N +
Sbjct: 1 TVIGINFGNTYSSIACINQGKADVIANEDGERQIPSAISYHGEQEYHGNQAKAQLIRNAK 60
Query: 62 NTVFDAKRLIGRKFDDPKIQQDMK--HWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSM 119
NT+ + + L+G+ F + + P V++ + + E + E++
Sbjct: 61 NTITNFRDLLGKPFSEIDVSAAAAAAPVPVAVIDVGGTVQEKEEPVPKETILTVHEVTVR 120
Query: 120 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 179
L ++KE AE +LG V AV++VP +F+D Q +A A AGL V++++ EP AA LA
Sbjct: 121 FLRRLKEAAEDFLGKKVAGAVLSVPTWFSDEQTEALVKAAEAAGLPVLQLIPEPAAALLA 180
Query: 180 YGLDKN---LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 236
Y + +RNV++ D GG DVS++++ G L+ + +TA D LGG+ D+ LV
Sbjct: 181 YDAGEPTEDEALDRNVVVADFGGTRTDVSVIAVRGG-LYTILATAHDPGLGGDTLDDALV 239
Query: 237 SHLAEEFKRK 246
H A+EF +K
Sbjct: 240 KHFAKEFTKK 249
Score = 29.7 bits (67), Expect = 4.0
Identities = 8/19 (42%), Positives = 14/19 (73%)
Query: 278 NLSINPDEAVAYGAAVQAA 296
+ +++P E VA G A+QA+
Sbjct: 368 SKALDPSELVARGCAIQAS 386
>gnl|CDD|212687 cd11737, HSPA4_NBD, Nucleotide-binding domain of HSPA4. Human
HSPA4 (also known as 70-kDa heat shock protein 4, APG-2,
HS24/P52, hsp70 RY, and HSPH2; the human HSPA4 gene maps
to 5q31.1) responds to acidic pH stress, is involved in
the radioadaptive response, is required for normal
spermatogenesis and is overexpressed in hepatocellular
carcinoma. It participates in a pathway along with NBS1
(Nijmegen breakage syndrome 1, also known as p85 or
nibrin), heat shock transcription factor 4b (HDF4b), and
HSPA14 (belonging to a different HSP70 subfamily) that
induces tumor migration, invasion, and transformation.
HSPA4 expression in sperm was increased in men with
oligozoospermia, especially in those with varicocele.
HSPA4 belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family.
HSP105/110s are believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. Hsp70 chaperone
activity is also regulated by J-domain proteins.
Length = 383
Score = 192 bits (489), Expect = 5e-56
Identities = 104/249 (41%), Positives = 152/249 (61%), Gaps = 7/249 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNT 63
+GIDLG VAV + G +E IAN+ +R TP+ ++F R IG AAK+QV N +NT
Sbjct: 3 VGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNAKNT 62
Query: 64 VFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLT 122
V KR GR F DP +Q + + +V I+V + E + F E++++M+LT
Sbjct: 63 VQGFKRFHGRAFSDPFVQAEKPSLAYDLVQLPTGSTGIKVMYMEEERNFTTEQVTAMLLT 122
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
K+KETAE+ L V D V++VP ++ DA+R++ DA IAGLN +R++NE TA ALAYG+
Sbjct: 123 KLKETAESALKKPVVDCVVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGI 182
Query: 183 DKN-----LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS 237
K + RNV+ D+G + VS+ + ++G L +V +TA DT LGG FD LV+
Sbjct: 183 YKQDLPALEEKPRNVVFVDMGHSAYQVSVCAFNKGKL-KVLATAFDTTLGGRKFDEVLVN 241
Query: 238 HLAEEFKRK 246
+ EEF +K
Sbjct: 242 YFCEEFGKK 250
Score = 35.7 bits (82), Expect = 0.048
Identities = 18/36 (50%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 299
V+ + FF GK ++ ++N DEAVA G A+Q AILS
Sbjct: 349 VKEKISKFF-GKEVSTTLNADEAVARGCALQCAILS 383
>gnl|CDD|212682 cd11732, HSP105-110_like_NBD, Nucleotide-binding domain of 105/110
kDa heat shock proteins including HSPA4, HYOU1, and
similar proteins. This subfamily include the human
proteins, HSPA4 (also known as 70-kDa heat shock protein
4, APG-2, HS24/P52, hsp70 RY, and HSPH2; the human HSPA4
gene maps to 5q31.1), HSPA4L (also known as 70-kDa heat
shock protein 4-like, APG-1, HSPH3, and OSP94; the human
HSPA4L gene maps to 4q28), and HSPH1 (also known as heat
shock 105kDa/110kDa protein 1, HSP105; HSP105A; HSP105B;
NY-CO-25; the human HSPH1 gene maps to 13q12.3), HYOU1
(also known as human hypoxia up-regulated 1, GRP170;
HSP12A; ORP150; GRP-170; ORP-150; the human HYOU1 gene
maps to11q23.1-q23.3), Saccharomyces cerevisiae Sse1p,
Sse2p, and Lhs1p, and a sea urchin sperm receptor. It
belongs to the 105/110 kDa heat shock protein
(HSP105/110) subfamily of the HSP70-like family, and
includes proteins believed to function generally as
co-chaperones of HSP70 chaperones, acting as nucleotide
exchange factors (NEFs), to remove ADP from their HSP70
chaperone partners during the ATP hydrolysis cycle.
HSP70 chaperones assist in protein folding and assembly,
and can direct incompetent "client" proteins towards
degradation. Like HSP70 chaperones, HSP105/110s have an
N-terminal nucleotide-binding domain (NBD) and a
C-terminal substrate-binding domain (SBD). For HSP70
chaperones, the nucleotide sits in a deep cleft formed
between the two lobes of the NBD. The two subdomains of
each lobe change conformation between ATP-bound,
ADP-bound, and nucleotide-free states. ATP binding opens
up the substrate-binding site; substrate-binding
increases the rate of ATP hydrolysis. HSP70 chaperone
activity is also regulated by J-domain proteins.
Length = 377
Score = 188 bits (478), Expect = 2e-54
Identities = 92/249 (36%), Positives = 140/249 (56%), Gaps = 7/249 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNT 63
G+DLG S +AV + ++I+ N+ NR+TPS V F R +G+ KN+ N +NT
Sbjct: 1 FGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIKNT 60
Query: 64 VFDAKRLIGRKFDDPKIQQDMKH-WPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
V + KR+IG + P +Q+ KH V D K +V F GE+ F+ ++++M +
Sbjct: 61 VANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMFID 120
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
K+K+T + ++ D I VP ++ + QR DA IAGLN +RIVN+ TAA ++YG+
Sbjct: 121 KVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSYGI 180
Query: 183 --DKNLKGE---RNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS 237
+GE R V D+G ++ SI++ +G L +V TA D H GG DFD +
Sbjct: 181 FKTDLPEGEEKPRIVAFVDIGHSSYTCSIVAFKKGQL-KVLGTACDKHFGGRDFDLAITE 239
Query: 238 HLAEEFKRK 246
H A+EFK K
Sbjct: 240 HFADEFKTK 248
Score = 31.5 bits (71), Expect = 1.0
Identities = 15/34 (44%), Positives = 22/34 (64%), Gaps = 2/34 (5%)
Query: 263 VVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAA 296
+ QS+ + F GK L+ ++N DEA+A GAA A
Sbjct: 346 LKQSISEAF--GKPLSTTLNQDEAIAKGAAFICA 377
>gnl|CDD|212688 cd11738, HSPA4L_NBD, Nucleotide-binding domain of HSPA4L. Human
HSPA4L (also known as 70-kDa heat shock protein 4-like,
APG-1, HSPH3, and OSP94; the human HSPA4L gene maps to
4q28) is expressed ubiquitously and predominantly in the
testis. It is required for normal spermatogenesis and
plays a role in osmotolerance. HSPA4L belongs to the
105/110 kDa heat shock protein (HSP105/110) subfamily of
the HSP70-like family. HSP105/110s are believed to
function generally as co-chaperones of HSP70 chaperones,
acting as nucleotide exchange factors (NEFs), to remove
ADP from their HSP70 chaperone partners during the ATP
hydrolysis cycle. HSP70 chaperones assist in protein
folding and assembly, and can direct incompetent
"client" proteins towards degradation. Like HSP70
chaperones, HSP105/110s have an N-terminal
nucleotide-binding domain (NBD) and a C-terminal
substrate-binding domain (SBD). For HSP70 chaperones,
the nucleotide sits in a deep cleft formed between the
two lobes of the NBD. The two subdomains of each lobe
change conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. Hsp70 chaperone activity is also
regulated by J-domain proteins.
Length = 383
Score = 182 bits (462), Expect = 4e-52
Identities = 97/249 (38%), Positives = 151/249 (60%), Gaps = 7/249 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNT 63
+GIDLG +AV + G +E IAN+ +R TP+ ++ R IG+AAK+Q+ N RNT
Sbjct: 3 VGIDLGFLNCYIAVARSGGIETIANEYSDRCTPACISLGSRTRAIGNAAKSQIVTNVRNT 62
Query: 64 VFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMVLT 122
+ K+L GR FDDP +Q + P+ + ++V + E + FA E+++ M+L
Sbjct: 63 IHGFKKLHGRSFDDPIVQTERIRLPYELQKMPNGSVGVKVRYLEEERPFAIEQVTGMLLA 122
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
K+KET+E L V D VI++P++F DA+R++ A +AGLN +R++NE TA ALAYG+
Sbjct: 123 KLKETSENALKKPVADCVISIPSFFTDAERRSVMAAAQVAGLNCLRLMNETTAVALAYGI 182
Query: 183 DKN-----LKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS 237
K + RNV+ D+G + VS+ + ++G L +V +T D +LGG +FD LV
Sbjct: 183 YKQDLPALDEKPRNVVFIDMGHSAYQVSVCAFNKGKL-KVLATTFDPYLGGRNFDEALVD 241
Query: 238 HLAEEFKRK 246
+ +EFK K
Sbjct: 242 YFCDEFKTK 250
Score = 35.8 bits (82), Expect = 0.050
Identities = 17/36 (47%), Positives = 25/36 (69%), Gaps = 1/36 (2%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 299
V+ + +FF K ++ ++N DEAVA G A+Q AILS
Sbjct: 349 VKEQITSFFL-KDISTTLNADEAVARGCALQCAILS 383
>gnl|CDD|234955 PRK01433, hscA, chaperone protein HscA; Provisional.
Length = 595
Score = 170 bits (433), Expect = 3e-46
Identities = 92/245 (37%), Positives = 131/245 (53%), Gaps = 24/245 (9%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRN 62
A+GID GTT S +A+ KV++I + P+ + FT IG+
Sbjct: 21 AVGIDFGTTNSLIAIATNRKVKVIKSIDDKELIPTTIDFTSNNFTIGN----------NK 70
Query: 63 TVFDAKRLIGRKFDD----PKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISS 118
+ KRL G+ + P + +K + + + S+ K+ K EI++
Sbjct: 71 GLRSIKRLFGKTLKEILNTPALFSLVKDY---LDVNSSELKLNFA----NKQLRIPEIAA 123
Query: 119 MVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 178
+ +K AE L ++ AVITVPA+FNDA R A IAG V+R++ EPTAAA
Sbjct: 124 EIFIYLKNQAEEQLKTNITKAVITVPAHFNDAARGEVMLAAKIAGFEVLRLIAEPTAAAY 183
Query: 179 AYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSH 238
AYGL+KN KG L++DLGGGTFDVSIL+I EG +F+V +T GD LGG D D + +
Sbjct: 184 AYGLNKNQKG--CYLVYDLGGGTFDVSILNIQEG-IFQVIATNGDNMLGGNDIDVVITQY 240
Query: 239 LAEEF 243
L +F
Sbjct: 241 LCNKF 245
Score = 166 bits (421), Expect = 1e-44
Identities = 83/204 (40%), Positives = 121/204 (59%), Gaps = 5/204 (2%)
Query: 281 INPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPC 340
I+PD+AV +GAA+QA L + + LL+DV PLSLG+E GG++ K+I RNT IP
Sbjct: 340 IDPDKAVVWGAALQAENLI----APHTNSLLIDVVPLSLGMELYGGIVEKIIMRNTPIPI 395
Query: 341 KQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDA 400
+ FTTYADNQ + + +GER M D L F+L G+PP G + +VTF +DA
Sbjct: 396 SVVKEFTTYADNQTGIQFHILQGEREMAADCRSLARFELKGLPPMKAGSIRAEVTFAIDA 455
Query: 401 NGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNL 460
+GIL+V+A + S S I +K + G + K EID M+ +A + D + A
Sbjct: 456 DGILSVSAYEKISNTSHAIEVKPNHG-IDKTEIDIMLENAYKNAKIDYTTRLLQEAVIEA 514
Query: 461 EAYVFNVKQALDDAGNKLTESEKS 484
EA +FN+++A+ + L+ESE S
Sbjct: 515 EALIFNIERAIAELTTLLSESEIS 538
>gnl|CDD|212673 cd10231, YegD_like, Escherichia coli YegD, a putative chaperone
protein, and related proteins. This bacterial subfamily
includes the uncharacterized Escherichia coli YegD. It
belongs to the heat shock protein 70 (HSP70) family of
chaperones that assist in protein folding and assembly
and can direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. YegD lacks the SBD. HSP70
chaperone activity is regulated by various
co-chaperones: J-domain proteins and nucleotide exchange
factors (NEFs). Some family members are not chaperones
but instead, function as NEFs for their Hsp70 partners,
other family members function as both chaperones and
NEFs.
Length = 415
Score = 99 bits (250), Expect = 1e-22
Identities = 73/254 (28%), Positives = 107/254 (42%), Gaps = 45/254 (17%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTER------LIGDAAKNQVA 57
+GID GT+ S VAV + G+ ++ + G+ T PS + F E L G AA
Sbjct: 1 LGIDFGTSNSAVAVARDGQPRLVPLEGGSTTLPSALFFPHEESALEREVLFGRAAIAAYL 60
Query: 58 MNPRNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEIS 117
P RL+ + +K + + + ++ G R TF E++
Sbjct: 61 EGPGEG-----RLM----------RSLK----SFLGSSLFRETRI--FGRRLTF--EDLV 97
Query: 118 SMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQ----RQATKDAGAI---AGLNVMRIV 170
+ L ++K+ AEA LG + VI P +F QA A AG +
Sbjct: 98 ARFLAELKQRAEAALGAEIDRVVIGRPVHFVGDDEAADAQAEARLRAAARAAGFKDVEFQ 157
Query: 171 NEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSID-EGALFEVRS-----TAGDT 224
EP AAAL Y + L E VL+ D+GGGT D S++ + R +G
Sbjct: 158 YEPIAAALDYE--QRLTREELVLVVDIGGGTSDFSLVRLGPSRRGRADRRADILAHSG-V 214
Query: 225 HLGGEDFDNRLVSH 238
+GG DFD RL H
Sbjct: 215 RIGGTDFDRRLSLH 228
>gnl|CDD|212671 cd10229, HSPA12_like_NBD, Nucleotide-binding domain of HSPA12A,
HSPA12B and similar proteins. Human HSPA12A (also known
as 70-kDa heat shock protein-12A) and HSPA12B (also
known as 70-kDa heat shock protein-12B, chromosome 20
open reading frame 60/C20orf60, dJ1009E24.2) belong to
the heat shock protein 70 (HSP70) family of chaperones
that assist in protein folding and assembly, and can
direct incompetent "client" proteins towards
degradation. Typically, HSP70s have a nucleotide-binding
domain (NBD) and a substrate-binding domain (SBD). The
nucleotide sits in a deep cleft formed between the two
lobes of the NBD. The two subdomains of each lobe change
conformation between ATP-bound, ADP-bound, and
nucleotide-free states. ATP binding opens up the
substrate-binding site; substrate-binding increases the
rate of ATP hydrolysis. HSP70 chaperone activity is
regulated by various co-chaperones: J-domain proteins
and nucleotide exchange factors (NEFs). No co-chaperones
have yet been identified for HSPA12A or HSPA12B. The
gene encoding HSPA12A maps to 10q26.12, a cytogenetic
region that might represent a common susceptibility
locus for both schizophrenia and bipolar affective
disorder; reduced expression of HSPA12A has been shown
in the prefrontal cortex of subjects with schizophrenia.
HSPA12A is also a candidate gene for forelimb-girdle
muscular anomaly, an autosomal recessive disorder of
Japanese black cattle. HSPA12A is predominantly
expressed in neuronal cells. It may also play a role in
the atherosclerotic process. The gene encoding HSPA12B
maps to 20p13. HSPA12B is predominantly expressed in
endothelial cells, is required for angiogenesis, and may
interact with known angiogenesis mediators. It may be
important for host defense in microglia-mediated immune
response. HSPA12B expression is up-regulated in
lipopolysaccharide (LPS)-induced inflammatory response
in the spinal cord, and mostly located in active
microglia; this induced expression may be regulated by
activation of MAPK-p38, ERK1/2 and SAPK/JNK signaling
pathways. Overexpression of HSPA12B also protects
against LPS-induced cardiac dysfunction and involves the
preserved activation of the PI3K/Akt signaling pathway.
Length = 404
Score = 73.9 bits (182), Expect = 4e-14
Identities = 70/277 (25%), Positives = 107/277 (38%), Gaps = 47/277 (16%)
Query: 4 IGIDLGTTYSCVA-VFQQGKVEII--------ANDQGNRTTPSYVAFTDTERLI--GDAA 52
+GID GTT+S VA F I +G P+ + + +L+ G A
Sbjct: 3 VGIDFGTTFSGVAYAFLDSSPPDIRVITRWPGGEGRGYCKVPTEILYDPEGKLVAWGYEA 62
Query: 53 KNQVAMNPRNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFA 112
+ +A+ F+ K+ D +D+ KP KT
Sbjct: 63 E------REYAELEAEDEGWLFFEWFKLLLD-PDALKLQGDDKLKPL------PPGKT-- 107
Query: 113 PEEISSMVLTKMKETAEAYLGHSVRDA---------VITVPAYFNDAQRQATKDAGAIAG 163
++ + L + E A L + + V+TVPA ++DA +QA ++A AG
Sbjct: 108 AVDVIADYLRYLYEHALEELKKTYGNGEFTALDIEWVLTVPAIWSDAAKQAMREAAIKAG 167
Query: 164 LNVMR-------IVNEPTAAALA---YGL-DKNLKGERNVLIFDLGGGTFDVSILSIDEG 212
L R IV EP AAAL L NLK L+ D GGGT D+++ +
Sbjct: 168 LVSSREGPDRLLIVLEPEAAALYCLKLLLISLNLKPGDGFLVCDAGGGTVDLTVYEVTSV 227
Query: 213 ALFEVR-STAGDTHLGGEDFDNRLVSHLAEEFKRKCR 248
++ AG L G F +R L +E +
Sbjct: 228 EPLRLKELAAGSGGLCGSTFVDRAFEELLKERLGELF 264
>gnl|CDD|212668 cd10225, MreB_like, MreB and similar proteins. MreB is a bacterial
protein which assembles into filaments resembling those
of eukaryotic F-actin. It is involved in determining the
shape of rod-like bacterial cells, by assembling into
large fibrous spirals beneath the cell membrane. MreB
has also been implicated in chromosome segregation;
specifically MreB is thought to bind to and segregate
the replication origin of bacterial chromosomes.
Length = 320
Score = 68.6 bits (169), Expect = 1e-12
Identities = 91/388 (23%), Positives = 145/388 (37%), Gaps = 139/388 (35%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAF-TDTERL--IGDAAKNQVAMNP 60
IGIDLGT + V V +G I+ N+ PS VA T T ++ +G+
Sbjct: 1 IGIDLGTANTLVYVKGKG---IVLNE------PSVVAIDTKTGKILAVGE---------- 41
Query: 61 RNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMV 120
+AK ++GR P I V
Sbjct: 42 -----EAKEMLGR--------------------------------------TPGNI--EV 56
Query: 121 LTKMK-------ETAEAYLGHSVRDA-----------VITVPAYFNDAQRQATKDAGAIA 162
+ +K E EA L + ++ VI VP+ + +R+A DA A
Sbjct: 57 IRPLKDGVIADFEATEAMLRYFIKKVKGRSLFFRPRVVICVPSGITEVERRAVIDAALHA 116
Query: 163 GLNVMRIVNEPTAAALAYGLD-KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 221
G + ++ EP AAA+ GLD KG ++ D+GGGT +++++S+ G + +S
Sbjct: 117 GAREVYLIEEPLAAAIGAGLDIFEPKG---NMVVDIGGGTTEIAVISL--GGIVVSKS-- 169
Query: 222 GDTHLGGEDFDNRLVSHL------------AEEFKRKCRSASDVGDHHGDAHFVVQSLLQ 269
+GG+DFD ++ ++ AEE K + SA + + V
Sbjct: 170 --IRVGGDDFDEAIIRYVRRKYNLLIGERTAEEIKIEIGSAYPL---DEEETMEV----- 219
Query: 270 NFFCGKSLNLSIN--PDEAVAYGAAVQAAILSGDQS--SAIQDVLLVDVTPLSL------ 319
G+ L + P V+ A+ AI+ VL + TP L
Sbjct: 220 ---KGRDL---VTGLPRTVEVTSEEVREALKEPLDEIVEAIKSVL--EKTPPELAADILD 271
Query: 320 -GIETAGGV-----MTKLIERNTRIPCK 341
GI GG + +LI T +P +
Sbjct: 272 RGIVLTGGGALLRGLDELISEETGLPVR 299
>gnl|CDD|212657 cd00012, NBD_sugar-kinase_HSP70_actin, Nucleotide-Binding Domain of
the sugar kinase/HSP70/actin superfamily. This
superfamily includes the actin family, the HSP70 family
of molecular chaperones and nucleotide exchange factors,
the ROK (repressor, ORF, kinase) family, the hexokinase
family, the FGGY family (which includes glycerol kinase
and similar carbohydrate kinases such as rhamnulokinase
and xylulokinase), the exopolyphosphatase/guanosine
pentaphosphate phosphohydrolase/nucleoside triphosphate
diphosphohydrolase family, propionate kinase/acetate
kinase family, glycerol dehydratase reactivase,
2-hydroxyglutaryl-CoA dehydratase component A,
N-acetylglucosamine kinase, butyrate kinase 2,
Escherichia coli YeaZ and similar glycoproteases, the
cell shape-determining protein MreB, the plasmid DNA
segregation factor ParM, cell cycle proteins FtsA, Pili
assembly protein PilM, ethanolamine utilization protein
EutJ, and similar proteins. The nucleotide-binding site
residues are conserved; the nucleotide sits in a deep
cleft formed between the two lobes of the
nucleotide-binding domain (NBD). Substrate binding to
superfamily members is associated with closure of this
catalytic site cleft. The functional activities of
several members of the superfamily, including
hexokinases, actin, and HSP70s, are modulated by
allosteric effectors, which may act on the cleft
closure.
Length = 185
Score = 54.1 bits (130), Expect = 2e-08
Identities = 32/126 (25%), Positives = 47/126 (37%), Gaps = 13/126 (10%)
Query: 98 PKIQVEFKGERKTFA-PEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT- 155
P+ V R + L ++ + A L + IT P R+
Sbjct: 23 PEEIVPTPVGRPGAVTDLDELEEALRELLKEALRQLKSEIDAVGITEPGGVPKENREVII 82
Query: 156 ---------KDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSI 206
A G + +VN+ AAALA GL K E VL+ DLG GT ++I
Sbjct: 83 LPNLLLIPLALALEDLGGVPVAVVNDAVAAALAEGLF--GKEEDTVLVVDLGTGTTGIAI 140
Query: 207 LSIDEG 212
+ +G
Sbjct: 141 VEDGKG 146
>gnl|CDD|115385 pfam06723, MreB_Mbl, MreB/Mbl protein. This family consists of
bacterial MreB and Mbl proteins as well as two related
archaeal sequences. MreB is known to be a rod
shape-determining protein in bacteria and goes to make
up the bacterial cytoskeleton. Genes coding for MreB/Mbl
are only found in elongated bacteria, not in coccoid
forms. It has been speculated that constituents of the
eukaryotic cytoskeleton (tubulin, actin) may have
evolved from prokaryotic precursor proteins closely
related to today's bacterial proteins FtsZ and MreB/Mbl.
Length = 327
Score = 54.9 bits (133), Expect = 4e-08
Identities = 63/246 (25%), Positives = 110/246 (44%), Gaps = 61/246 (24%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAF-TDTERLI--GDAAKNQVAMNP 60
IGIDLGT + V V +G I+ N+ PS VA T T++++ G+ AK + P
Sbjct: 4 IGIDLGTANTLVYVKGKG---IVLNE------PSVVAINTKTKKVLAVGNEAKKMLGRTP 54
Query: 61 RNTVFDAKR-LIGRKFDDPKIQQDM-KHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISS 118
N V A R L D ++ + M K++ V RS K +V
Sbjct: 55 GNIV--AVRPLKDGVIADFEVTEAMLKYFIKKVHGRRSLSKPRV---------------- 96
Query: 119 MVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 178
VI VP+ + +R+A K+A AG + ++ EP AAA+
Sbjct: 97 ---------------------VICVPSGITEVERRAVKEAAKNAGAREVFLIEEPMAAAI 135
Query: 179 AYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSH 238
GL ++ ++ D+GGGT +V+++S+ G + +S + G++ D ++ +
Sbjct: 136 GAGL--PVEEPTGNMVVDIGGGTTEVAVISL--GGIVTSKS----VRVAGDEMDEAIIKY 187
Query: 239 LAEEFK 244
+ +++
Sbjct: 188 IRKKYN 193
>gnl|CDD|129982 TIGR00904, mreB, cell shape determining protein, MreB/Mrl family.
MreB (mecillinam resistance) in E. coli (also called
envB) and the paralogous pair MreB and Mrl of Bacillus
subtilis have all been shown to help determine cell
shape. This protein is present in a wide variety of
bacteria, including spirochetes, but is missing from the
Mycoplasmas and from Gram-positive cocci. Most completed
bacterial genomes have a single member of this family.
In some species it is an essential gene. A close homolog
is found in the Archaeon Methanobacterium
thermoautotrophicum, and a more distant homolog in
Archaeoglobus fulgidus. The family is related to cell
division protein FtsA and heat shock protein DnaK [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 333
Score = 53.2 bits (128), Expect = 1e-07
Identities = 67/273 (24%), Positives = 114/273 (41%), Gaps = 77/273 (28%)
Query: 4 IGIDLGTTYSCVAVFQQGKV----EIIANDQG-NRTTPSYVAFTDTERLIGDAAKNQVAM 58
IGIDLGT + V V +G V ++A + T S +A +G AK +
Sbjct: 5 IGIDLGTANTLVYVKGRGIVLNEPSVVAIRTDRDAKTKSILA-------VGHEAKEMLGK 57
Query: 59 NPRNTVFDAKR-LIGRKFDDPKIQQDM-KHWPFTVVNDRS--KPKIQVEFKGERKTFAPE 114
P N V A R + D ++ + M K++ V + +S KP+I
Sbjct: 58 TPGNIV--AIRPMKDGVIADFEVTEKMIKYFIKQVHSRKSFFKPRI-------------- 101
Query: 115 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 174
VI VP+ +R+A K++ AG + ++ EP
Sbjct: 102 -------------------------VICVPSGITPVERRAVKESALSAGAREVYLIEEPM 136
Query: 175 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 234
AAA+ GL ++ ++ D+GGGT +V+++S+ G + RS +GG++FD
Sbjct: 137 AAAIGAGLP--VEEPTGSMVVDIGGGTTEVAVISL--GGIVVSRS----IRVGGDEFDEA 188
Query: 235 LVSHL------------AEEFKRKCRSASDVGD 255
+++++ AE K + SA + D
Sbjct: 189 IINYIRRTYNLLIGEQTAERIKIEIGSAYPLND 221
>gnl|CDD|237904 PRK15080, PRK15080, ethanolamine utilization protein EutJ;
Provisional.
Length = 267
Score = 52.5 bits (127), Expect = 1e-07
Identities = 45/156 (28%), Positives = 65/156 (41%), Gaps = 51/156 (32%)
Query: 120 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT--KDAGAI------AGLNVMRIVN 171
++ ++K T E LG + A +P T D AI AGL V +++
Sbjct: 72 IVRRLKATLEEKLGRELTHAATAIPP--------GTSEGDPRAIINVVESAGLEVTHVLD 123
Query: 172 EPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL-------SIDEGALFEVRSTAGDT 224
EPTAAA G+D N + D+GGGT +SIL S DE T G T
Sbjct: 124 EPTAAAAVLGID-------NGAVVDIGGGTTGISILKDGKVVYSADE-------PTGG-T 168
Query: 225 HLG-------GEDFDNRLVSHLAEEFKRKCRSASDV 253
H+ G F+ AE++KR + ++
Sbjct: 169 HMSLVLAGAYGISFEE------AEQYKRDPKHHKEI 198
>gnl|CDD|236954 PRK11678, PRK11678, putative chaperone; Provisional.
Length = 450
Score = 51.8 bits (125), Expect = 5e-07
Identities = 62/245 (25%), Positives = 97/245 (39%), Gaps = 62/245 (25%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTE-------RLIGDAAKNQV 56
IG D GT VAV + GK ++ + + PS + E R + A +
Sbjct: 3 IGFDYGTANCSVAVMRDGKPRLLPLENDSTYLPSTLCAPTREAVSEWLYRHLDVPAYDDE 62
Query: 57 -------AMNPR---------NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPK- 99
A+ +VF + + +DP +++ + V +S PK
Sbjct: 63 RQALLRRAIRYNREEDIDVTAQSVFFGLAALAQYLEDP---EEV----YFV---KS-PKS 111
Query: 100 ---------IQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFN-- 148
QV F E++ ++ +K+ AEA L ++ AVI P F
Sbjct: 112 FLGASGLKPQQVAL------F--EDLVCAMMLHIKQQAEAQLQAAITQAVIGRPVNFQGL 163
Query: 149 ---DAQRQAT---KDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTF 202
+A RQA + A AG + EP AA L + + L E+ VL+ D+GGGT
Sbjct: 164 GGEEANRQAEGILERAAKRAGFKDVEFQFEPVAAGLDF--EATLTEEKRVLVVDIGGGTT 221
Query: 203 DVSIL 207
D S+L
Sbjct: 222 DCSML 226
>gnl|CDD|227157 COG4820, EutJ, Ethanolamine utilization protein, possible
chaperonin [Amino acid transport and metabolism].
Length = 277
Score = 51.0 bits (122), Expect = 5e-07
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 120 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALA 179
++ ++K+T E LG A +P + + + AGL V+ +++EPTAAA
Sbjct: 77 IVRRLKDTLEKQLGIRFTHAATAIPPGTEQGDPRISINVIESAGLEVLHVLDEPTAAADV 136
Query: 180 YGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVS-H 238
LD + + D+GGGT +SI+ ++ G TH+ N +S
Sbjct: 137 LQLD-------DGGVVDIGGGTTGISIVK-KGKVIYSADEPTGGTHMTLVLAGNYGISLE 188
Query: 239 LAEEFKRKCRSASDV 253
AE++KR + ++
Sbjct: 189 EAEQYKRGHKKGEEI 203
>gnl|CDD|237564 PRK13930, PRK13930, rod shape-determining protein MreB;
Provisional.
Length = 335
Score = 49.4 bits (119), Expect = 2e-06
Identities = 59/251 (23%), Positives = 105/251 (41%), Gaps = 71/251 (28%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAF-TDTERL--IGDAAKNQVAMNP 60
IGIDLGT V+ +GK I+ N+ PS VA T T ++ +G+
Sbjct: 11 IGIDLGTAN--TLVYVKGK-GIVLNE------PSVVAIDTKTGKVLAVGE---------- 51
Query: 61 RNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMV 120
+AK ++GR + + + +K V+ D F E + +
Sbjct: 52 -----EAKEMLGRTPGNIEAIRPLKD---GVIAD----------------F---EATEAM 84
Query: 121 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 180
L + A VI VP+ + +R+A ++A AG + ++ EP AAA+
Sbjct: 85 LRYFIKKARGRRFFRKPRIVICVPSGITEVERRAVREAAEHAGAREVYLIEEPMAAAIGA 144
Query: 181 GLDKNLKGERNV------LIFDLGGGTFDVSILSIDEGALFE-VRSTAGDTHLGGEDFDN 233
GL V ++ D+GGGT +V+++S+ E +R + G++ D
Sbjct: 145 GLP--------VTEPVGNMVVDIGGGTTEVAVISLGGIVYSESIR-------VAGDEMDE 189
Query: 234 RLVSHLAEEFK 244
+V ++ ++
Sbjct: 190 AIVQYVRRKYN 200
>gnl|CDD|213718 TIGR02529, EutJ, ethanolamine utilization protein EutJ family
protein.
Length = 239
Score = 48.2 bits (115), Expect = 4e-06
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 9/138 (6%)
Query: 117 SSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA 176
+ ++ ++K+T E LG + A +P + + + AG+ V+ +++EPTAA
Sbjct: 42 AVEIVRRLKDTLEQKLGIELTHAATAIPPGTIEGDPKVIVNVIESAGIEVLHVLDEPTAA 101
Query: 177 ALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLV 236
A + N + D+GGGT +SIL ++ G TH+ +
Sbjct: 102 AAVLQIK-------NGAVVDVGGGTTGISILK-KGKVIYSADEPTGGTHMSLVLAGAYGI 153
Query: 237 S-HLAEEFKRKCRSASDV 253
S AEE+KR + ++
Sbjct: 154 SFEEAEEYKRGHKDEEEI 171
>gnl|CDD|184403 PRK13929, PRK13929, rod-share determining protein MreBH;
Provisional.
Length = 335
Score = 48.4 bits (115), Expect = 5e-06
Identities = 60/245 (24%), Positives = 98/245 (40%), Gaps = 59/245 (24%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTER---LIGDAAKNQVAMNP 60
IGIDLGT V +G II N+ PS VA + IG AKN + P
Sbjct: 7 IGIDLGTANILVYSKNKG---IILNE------PSVVAVDTETKAVLAIGTEAKNMIGKTP 57
Query: 61 RNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMV 120
V R D I A ++++ +
Sbjct: 58 GKIV------AVRPMKDGVI-------------------------------ADYDMTTDL 80
Query: 121 LTKMKETAEAYLGHSVR--DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAAL 178
L ++ + A +G + R + V+ P+ +R+A DA G + ++ EP AAA+
Sbjct: 81 LKQIMKKAGKNIGMTFRKPNVVVCTPSGSTAVERRAISDAVKNCGAKNVHLIEEPVAAAI 140
Query: 179 AYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSH 238
G D + ++ D+GGGT +V+I+S G + S +GG+ D +VS
Sbjct: 141 --GADLPVDEPVANVVVDIGGGTTEVAIISF--GGVVSCHS----IRIGGDQLDEDIVSF 192
Query: 239 LAEEF 243
+ +++
Sbjct: 193 VRKKY 197
>gnl|CDD|237563 PRK13928, PRK13928, rod shape-determining protein Mbl; Provisional.
Length = 336
Score = 48.0 bits (115), Expect = 6e-06
Identities = 62/256 (24%), Positives = 109/256 (42%), Gaps = 81/256 (31%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAF-TDTERLI--GDAAK------- 53
IGIDLGT + V V+ +GK I+ N+ PS VA +T +++ G+ A+
Sbjct: 6 IGIDLGT--ANVLVYVKGK-GIVLNE------PSVVAIDKNTNKVLAVGEEARRMVGRTP 56
Query: 54 -NQVAMNP-RNTV---FDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGER 108
N VA+ P R+ V +D + + F I + F SKP+I
Sbjct: 57 GNIVAIRPLRDGVIADYDVTEKMLKYF----INKACGKRFF------SKPRI-------- 98
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
+I +P +++A ++A AG +
Sbjct: 99 -------------------------------MICIPTGITSVEKRAVREAAEQAGAKKVY 127
Query: 169 IVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGG 228
++ EP AAA+ GLD + ++ D+GGGT D+++LS+ G + S + G
Sbjct: 128 LIEEPLAAAIGAGLD--ISQPSGNMVVDIGGGTTDIAVLSL--GGIVTSSS----IKVAG 179
Query: 229 EDFDNRLVSHLAEEFK 244
+ FD ++ ++ +++K
Sbjct: 180 DKFDEAIIRYIRKKYK 195
>gnl|CDD|224003 COG1077, MreB, Actin-like ATPase involved in cell morphogenesis
[Cell division and chromosome partitioning].
Length = 342
Score = 44.1 bits (105), Expect = 1e-04
Identities = 55/250 (22%), Positives = 103/250 (41%), Gaps = 66/250 (26%)
Query: 4 IGIDLGTTYSCVAVFQQGKV----EIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMN 59
IGIDLGT + V V +G V ++A + +T + ++++G N VA+
Sbjct: 9 IGIDLGTANTLVYVKGKGIVLNEPSVVAIESEGKTKVVLAVGEEAKQMLGRTPGNIVAIR 68
Query: 60 P-RNTV---FDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEE 115
P ++ V F+ L+ + F I++ N S PK ++
Sbjct: 69 PMKDGVIADFEVTELMLKYF----IKK-------VHKNGSSFPKPRI------------- 104
Query: 116 ISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTA 175
VI VP+ D +R+A K+A AG + ++ EP A
Sbjct: 105 ------------------------VICVPSGITDVERRAIKEAAESAGAREVYLIEEPMA 140
Query: 176 AALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDT-HLGGEDFDNR 234
AA G + ++ D+GGGT +V+++S L + + + +GG+ D
Sbjct: 141 AA--IGAGLPIMEPTGSMVVDIGGGTTEVAVIS-----LGGI--VSSSSVRVGGDKMDEA 191
Query: 235 LVSHLAEEFK 244
++ ++ +++
Sbjct: 192 IIVYVRKKYN 201
>gnl|CDD|223918 COG0849, ftsA, Cell division ATPase FtsA [Cell division and
chromosome partitioning].
Length = 418
Score = 41.1 bits (97), Expect = 0.001
Identities = 26/53 (49%), Positives = 33/53 (62%), Gaps = 4/53 (7%)
Query: 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGAL 214
AGL V IV EP A+ALA L ++ K E V + D+GGGT D++I GAL
Sbjct: 177 AGLKVDNIVLEPLASALAV-LTEDEK-ELGVALIDIGGGTTDIAIYK--NGAL 225
>gnl|CDD|237562 PRK13927, PRK13927, rod shape-determining protein MreB;
Provisional.
Length = 334
Score = 37.4 bits (88), Expect = 0.014
Identities = 35/126 (27%), Positives = 64/126 (50%), Gaps = 22/126 (17%)
Query: 140 VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLD-KNLKGERNVLIFDLG 198
VI VP+ + +R+A +++ AG + ++ EP AAA+ GL G ++ D+G
Sbjct: 100 VICVPSGITEVERRAVRESALGAGAREVYLIEEPMAAAIGAGLPVTEPTG---SMVVDIG 156
Query: 199 GGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHL------------AEEFKRK 246
GGT +V+++S+ G + V S + +GG+ FD +++++ AE K +
Sbjct: 157 GGTTEVAVISL--GGI--VYSKS--VRVGGDKFDEAIINYVRRNYNLLIGERTAERIKIE 210
Query: 247 CRSASD 252
SA
Sbjct: 211 IGSAYP 216
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 36.6 bits (85), Expect = 0.040
Identities = 26/108 (24%), Positives = 56/108 (51%), Gaps = 15/108 (13%)
Query: 421 IKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISAR-NNLEAYVFNVKQALDD------ 473
+K L+ E++++ + + E+ K+E E++ +I+AR L+ + +K+A+++
Sbjct: 377 LKKRLTGLTPEKLEKELEELEKAKEEIEEEISKITARIGELKKEIKELKKAIEELKKAKG 436
Query: 474 ----AGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 517
G +LTE + EE A LK + +E ++K ++L+K
Sbjct: 437 KCPVCGRELTEEHRKELLEEYTAELK----RIEKELKEIEEKERKLRK 480
>gnl|CDD|212669 cd10227, ParM_like, Plasmid segregation protein ParM and similar
proteins. ParM is a plasmid-encoded bacterial homolog
of actin, which polymerizes into filaments similar to
F-actin, and plays a vital role in plasmid segregation.
ParM filaments segregate plasmids paired at midcell into
the individual daughter cells. This subfamily also
contains Thermoplasma acidophilum Ta0583, an active
ATPase at physiological temperatures, which has a
propensity to form filaments.
Length = 312
Score = 34.7 bits (80), Expect = 0.100
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 5/78 (6%)
Query: 168 RIVNEPTAAALAYGLDKNLKGER-NVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHL 226
++ E A LD+ + VL+ D+GGGT DV + D G V S++G L
Sbjct: 144 KVFPEGVGALFDLLLDEGGLLKDKKVLVIDIGGGTTDVVV--FDNGKP--VESSSGSLEL 199
Query: 227 GGEDFDNRLVSHLAEEFK 244
G D + L +E+
Sbjct: 200 GVSDLYEAIAKELNKEYG 217
>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase. This model describes
D-xylulose kinases, a subfamily of the FGGY family of
carbohydrate kinases. The member from Klebsiella
pneumoniae, designated DalK (see PMID:9324246), was
annotated erroneously in GenBank as D-arabinitol kinase
but is authentic D-xylulose kinase. D-xylulose kinase
(XylB) generally is found with xylose isomerase (XylA)
and acts in xylose utilization [Energy metabolism,
Sugars].
Length = 481
Score = 33.8 bits (78), Expect = 0.24
Identities = 16/54 (29%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 282 NPDEAVAYGAAVQAAI-LSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIER 334
+E A GAA+ AA L +A+ +V T L I +L ER
Sbjct: 422 EGEEGPALGAAILAAWALGEKDLAALCSEAVVKQTESVLPIAENVEAYEELYER 475
>gnl|CDD|219010 pfam06406, StbA, StbA protein. This family consists of several
bacterial StbA plasmid stability proteins.
Length = 318
Score = 33.5 bits (77), Expect = 0.25
Identities = 26/101 (25%), Positives = 43/101 (42%), Gaps = 16/101 (15%)
Query: 157 DAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFE 216
D+ I ++VM P + + + K+L ++LI DLGG T DV+ + G L
Sbjct: 136 DSFTIRSVSVM-----PESLPAGFSVLKDLDSFESLLIVDLGGTTLDVAHVR---GQLEG 187
Query: 217 VRSTAGDTHLGGEDFDNRLVSHLAEEFKRKCRSASDVGDHH 257
+ GD+ +G VS + + K +AS
Sbjct: 188 ISKIHGDSRIG--------VSLVTDAVKSALATASTRTSSF 220
>gnl|CDD|233543 TIGR01716, RGG_Cterm, transcriptional activator, Rgg/GadR/MutR
family, C-terminal domain. This model describes the
whole, except for a 60 residue N-terminal
helix-turn-helix DNA-binding domain (PFAM pfam01381) of
the family of proteins related to the transcriptional
regulator Rgg, also called RopB. Rgg is required for
secretion of several proteins, including a cysteine
proteinase associated with virulence. GadR (GP|2352485)
is a positive regulator of a glutamate-dependent acid
resistance mechanism. MutR is a transcriptional
activator for mutacin biosynthesis genes in
Streptococcus mutans. This family appears restricted to
the low-GC Gram-positive bacteria, including at least
eight members in Lactococcus lactis [Regulatory
functions, DNA interactions].
Length = 220
Score = 33.0 bits (76), Expect = 0.29
Identities = 20/94 (21%), Positives = 31/94 (32%), Gaps = 15/94 (15%)
Query: 428 LSKEEIDR---MINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKS 484
+ K E + E+ D ++ ERI ++ G K + EK
Sbjct: 139 IEKNEFSYAQYFLEKLEKILDPEDDLYERILFNFLKGIILYKE-------GQKESGEEKI 191
Query: 485 RCREECDATLKWLDNNTLADKEEYQDKLQQLQKS 518
E+ L TLA YQ L++ K
Sbjct: 192 ---EQAIEIFDELGYPTLAA--YYQKLLEKFVKK 220
>gnl|CDD|217305 pfam02970, TBCA, Tubulin binding cofactor A.
Length = 91
Score = 30.3 bits (69), Expect = 0.55
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 14/89 (15%)
Query: 427 RLSKEEIDRMINDAERYKDEDEKQKERIS--ARNNLEAYVFNV-KQALDDAGNKLTESEK 483
RL KEE Y+ E E+Q+ER+ + Y ++ L + L + ++
Sbjct: 11 RLIKEE--------ASYEKEVEQQEERVEKLKAEGADEYDLKKQEEVLKETEMMLPDCKR 62
Query: 484 SRCREECDATLKWLD--NNTLADKEEYQD 510
R ++ ++L+ L + EE ++
Sbjct: 63 -RLQKAVADLEEYLEEYEEGLEELEEAKE 90
>gnl|CDD|149788 pfam08841, DDR, Diol dehydratase reactivase ATPase-like domain.
Diol dehydratase (DDH, EC:4.2.1.28) and its
isofunctional homologue glycerol dehydratase (GDH,
EC.4.2.1.30) are enzymes which catalyze the conversion
of glycerol 1,2-propanediol, and 1,2-ethanediol to
aldehydes. These reactions require coenzyme B12.
Cleavage of the Co-C bond of coenzyme B12 by substrates
or coenzyme analogues results in inactivation during
which coenzyme B12 remains tightly bound to the
apoenzyme. This family comprises of the large subunit of
the diol dehydratase and glycerol dehydratase
reactivating factors whose function is to reactivate the
holoenzyme by exchange of a damaged cofactor for intact
coenzyme.
Length = 332
Score = 32.0 bits (73), Expect = 0.67
Identities = 27/94 (28%), Positives = 36/94 (38%), Gaps = 23/94 (24%)
Query: 163 GLNVMRIVNEPTAAALAY----GLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVR 218
G+ V E AA L G K L I DLG G+ D SI++ +
Sbjct: 109 GVPVEIGGVEAEAAILGALTTPGTPKPL------AILDLGAGSTDASIINAEGTVTATHL 162
Query: 219 STAGDT-------HLGGEDFDNRLVSHLAEEFKR 245
+ AG+ LG ED LAE+ K+
Sbjct: 163 AGAGEMVTMLINSELGLEDR------ALAEDIKK 190
>gnl|CDD|180664 PRK06705, PRK06705, argininosuccinate lyase; Provisional.
Length = 502
Score = 31.9 bits (72), Expect = 0.88
Identities = 21/54 (38%), Positives = 33/54 (61%), Gaps = 5/54 (9%)
Query: 419 ITIKNDKGRLSKEEIDRMIND-AERYKDED---EKQKERIS-ARNNLEAYVFNV 467
I +N G SK+E++RMIN+ E ++ E+ EK+K+RI A N+L N+
Sbjct: 446 IQKRNVYGGPSKKEMERMINNRKELFRKEEEVFEKEKQRILQAENDLNMLASNI 499
>gnl|CDD|222881 PHA02566, alt, ADP-ribosyltransferase; Provisional.
Length = 684
Score = 31.6 bits (72), Expect = 1.1
Identities = 19/121 (15%), Positives = 36/121 (29%), Gaps = 4/121 (3%)
Query: 399 DANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISAR- 457
A I ++ L + R + DEK K +IS
Sbjct: 271 PAEEIKTNEGSGAIKTMVAASRFESSDYEL---DYFRKFIFLRHIGEVDEKIKLKISEAI 327
Query: 458 NNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 517
+ + + ++L E K E L+W+++ K + +L +
Sbjct: 328 KQEDQTSIKNLEKFAASVDELLEDYKDIVFENSLDALEWINDLNKGRKGMPDEVKAELTR 387
Query: 518 S 518
S
Sbjct: 388 S 388
>gnl|CDD|224092 COG1171, IlvA, Threonine dehydratase [Amino acid transport and
metabolism].
Length = 347
Score = 31.4 bits (72), Expect = 1.2
Identities = 23/85 (27%), Positives = 35/85 (41%), Gaps = 16/85 (18%)
Query: 138 DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAA----ALAYGLDKNLKGERNVL 193
D ++ V D A +D +I+ EP A AL G + L+G+ V+
Sbjct: 257 DDIVLVD---EDEICAAMRDL-----FERTKIIAEPAGALALAALLAGKIEPLQGKTVVV 308
Query: 194 IFDLGGGTFDVSILS--IDEGALFE 216
I L GG D L+ ++ L E
Sbjct: 309 I--LSGGNIDFERLAEVLERALLGE 331
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 31.6 bits (72), Expect = 1.3
Identities = 15/116 (12%), Positives = 46/116 (39%), Gaps = 7/116 (6%)
Query: 408 AKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISA----RNNLEAY 463
K + + + + +EE++ + + E ++ E+ +E + + L+
Sbjct: 721 LKRELAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELESLEEALAKLKEE 780
Query: 464 VFNVKQALDDAGNKL--TESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 517
+ +++ +L E E DA + L + +E + ++++L++
Sbjct: 781 IEELEEKRQALQEELEELEEELEEAERRLDALEREL-ESLEQRRERLEQEIEELEE 835
Score = 29.7 bits (67), Expect = 5.5
Identities = 20/100 (20%), Positives = 44/100 (44%), Gaps = 9/100 (9%)
Query: 427 RLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLT------E 480
L +E ++ + N+ E ++ E+ KE+I A + + L+ +L E
Sbjct: 305 SLLRERLEELENELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELE 364
Query: 481 SEKSRCREECDATLKWLDNN---TLADKEEYQDKLQQLQK 517
+ S EE + + L A+ E +++L++L++
Sbjct: 365 EKLSALLEELEELFEALREELAELEAELAEIRNELEELKR 404
Score = 28.9 bits (65), Expect = 8.6
Identities = 25/114 (21%), Positives = 46/114 (40%), Gaps = 17/114 (14%)
Query: 415 KSQNITIKNDK-----GRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAY-VFNVK 468
+N+ D +L K E AERY+ E + E L + ++
Sbjct: 184 TEENLERLEDLLEELEKQLEKLERQA--EKAERYQ---ELKAELRELELALLLAKLKELR 238
Query: 469 QALDDAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPL 522
+ L++ E E SR EE + + L+ + EE + +L++L++ L
Sbjct: 239 KELEEL-----EEELSRLEEELEELQEELE-EAEKEIEELKSELEELREELEEL 286
>gnl|CDD|233300 TIGR01174, ftsA, cell division protein FtsA. This bacterial cell
division protein interacts with FtsZ, the bacterial
homolog of tubulin. It is an ATP-binding protein and
shows structural similarities to actin and heat shock
cognate protein 70 [Cellular processes, Cell division].
Length = 371
Score = 31.1 bits (71), Expect = 1.4
Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 16/103 (15%)
Query: 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERN--VLIFDLGGGTFDVSILSIDEGALFEVRS 219
GL V IV A+A+A L ++ E+ V + D+GGGT D+++ + G++ +
Sbjct: 170 CGLEVDNIVLSGLASAIAV-LTED---EKELGVCLIDIGGGTTDIAVYT--GGSIRYTKV 223
Query: 220 TAGDTHLGGEDFDNRLVSHLAEEFKRKCRSASDVGDHHGDAHF 262
+GG N + +A+ + A + +G A
Sbjct: 224 IP----IGG----NHITKDIAKALRTPLEEAERIKIKYGCASI 258
>gnl|CDD|216816 pfam01968, Hydantoinase_A, Hydantoinase/oxoprolinase. This family
includes the enzymes hydantoinase and oxoprolinase
EC:3.5.2.9. Both reactions involve the hydrolysis of
5-membered rings via hydrolysis of their internal imide
bonds.
Length = 285
Score = 30.7 bits (70), Expect = 1.6
Identities = 19/94 (20%), Positives = 39/94 (41%), Gaps = 16/94 (17%)
Query: 120 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR------IVNEP 173
+ M+ E + ++++ I P Y + G + + R I++ P
Sbjct: 11 LAPIMRRYLEG-VEDALKERGIKAPLYV-------MQSDGGLMSIEEARRKPVETILSGP 62
Query: 174 TAAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL 207
A + L G +N ++ D+GG + DVS++
Sbjct: 63 AAGVVGAAY--TLAGLKNAIVVDMGGTSTDVSLI 94
>gnl|CDD|198375 cd07809, FGGY_D-XK_1, D-xylulose kinases, subgroup 1; members of
the FGGY family of carbohydrate kinases. This subgroup
is composed of D-xylulose kinases (XK, also known as
xylulokinase; EC 2.7.1.17) from bacteria and eukaryota.
They share high sequence similarity with Escherichia
coli xylulokinase (EcXK), which catalyzes the
rate-limiting step in the ATP-dependent phosphorylation
of D-xylulose to produce D-xylulose 5-phosphate (X5P)
and ADP. Some uncharacterized sequences are also
included in this subfamily. EcXK exists as a dimer. Each
monomer consists of two large domains separated by an
open cleft that forms an active site. This model
includes both the N-terminal domain, which adopts a
ribonuclease H-like fold, and the structurally related
C-terminal domain. The presence of Mg2+ or Mn2+ might be
required for catalytic activity. Members of this
subgroup belong to the FGGY family of carbohydrate
kinases.
Length = 487
Score = 31.1 bits (71), Expect = 1.7
Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
Query: 284 DEAVAYGAAVQAA-ILSGDQSSAIQDVLLVD 313
+EA A GAA+QAA L+G+ + + L D
Sbjct: 428 EEAAALGAAIQAAWCLTGEDGADVALAELCD 458
>gnl|CDD|197874 smart00787, Spc7, Spc7 kinetochore protein. This domain is found
in cell division proteins which are required for
kinetochore-spindle association.
Length = 312
Score = 30.0 bits (68), Expect = 2.8
Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 4/94 (4%)
Query: 427 RLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRC 486
+L E D + +R K++ +K + I + + Q L+ LT +KS
Sbjct: 193 QLEDELEDCDPTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTN-KKSEL 251
Query: 487 REEC-DATLKWLDNN--TLADKEEYQDKLQQLQK 517
E +A K T + E+ +++L+ LQ
Sbjct: 252 NTEIAEAEKKLEQCRGFTFKEIEKLKEQLKLLQS 285
>gnl|CDD|232948 TIGR00381, cdhD, CO dehydrogenase/acetyl-CoA synthase, delta
subunit. This is the small subunit of a heterodimer
which catalyzes the reaction CO + H2O + Acceptor = CO2 +
Reduced acceptor and is involved in the synthesis of
acetyl-CoA from CO2 and H2 [Energy metabolism,
Chemoautotrophy].
Length = 389
Score = 30.3 bits (68), Expect = 3.0
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 7/79 (8%)
Query: 105 KGERKTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGL 164
+GER A + + K+ A+ Y GH V I R K GL
Sbjct: 214 EGERCLLASANLD-LDYEKIANAAKKY-GHVVLSWTIMDINMQKTLNRYLLK-----RGL 266
Query: 165 NVMRIVNEPTAAALAYGLD 183
IV +PT AL YG++
Sbjct: 267 MPRDIVMDPTTCALGYGIE 285
>gnl|CDD|220403 pfam09788, Tmemb_55A, Transmembrane protein 55A. Members of this
family catalyze the hydrolysis of the 4-position
phosphate of phosphatidylinositol 4,5-bisphosphate, in
the reaction: 1-phosphatidyl-myo-inositol
4,5-bisphosphate + H(2)O =
1-phosphatidyl-1D-myo-inositol 5-phosphate + phosphate.
Length = 258
Score = 29.4 bits (66), Expect = 4.0
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 521 PLMSKMHGGAGGASAGDMPRGGPTVEEVD 549
PL+S+ G G S GD G P+ D
Sbjct: 9 PLLSEDIDGGTGVSPGDEGAGPPSKPPYD 37
>gnl|CDD|240714 cd12268, RRM_Vip1, RNA recognition motif in fission yeast protein
Vip1 and similar proteins. This subfamily corresponds
to Vip1, an RNA-binding protein encoded by gene vip1
from fission yeast Schizosaccharomyces pombe. Its
biological role remains unclear. Vip1 contains an
N-terminal RNA recognition motif (RRM), also termed RBD
(RNA binding domain) or RNP (ribonucleoprotein domain).
.
Length = 68
Score = 27.1 bits (60), Expect = 4.2
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 6/47 (12%)
Query: 272 FCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLS 318
FCGK NL + D Q A ++ ++ SA + LL+D L
Sbjct: 21 FCGKISNLDLTND------GESQTATITFEKPSAAKTALLLDNALLG 61
>gnl|CDD|224212 COG1293, COG1293, Predicted RNA-binding protein homologous to
eukaryotic snRNP [Transcription].
Length = 564
Score = 29.7 bits (67), Expect = 4.3
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 2/82 (2%)
Query: 401 NGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNL 460
G+ +V D + I I+ DK + E R ++ K ++S
Sbjct: 335 EGLKSVRLADFYGNEE--IKIELDKSKTPSENAQRYFKKYKKLKGAKVNLDRQLSELKEA 392
Query: 461 EAYVFNVKQALDDAGNKLTESE 482
AY + K AL+ A K E
Sbjct: 393 IAYYESAKTALEKAEGKKAIEE 414
>gnl|CDD|191111 pfam04849, HAP1_N, HAP1 N-terminal conserved region. This family
represents an N-terminal conserved region found in
several huntingtin-associated protein 1 (HAP1)
homologues. HAP1 binds to huntingtin in a polyglutamine
repeat-length-dependent manner. However, its possible
role in the pathogenesis of Huntington's disease is
unclear. This family also includes a similar N-terminal
conserved region from hypothetical protein products of
ALS2CR3 genes found in the human juvenile amyotrophic
lateral sclerosis critical region 2q33-2q34.
Length = 307
Score = 29.4 bits (66), Expect = 4.5
Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 438 NDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWL 497
+ E +DE + ++ ++ +AL + KL E E R E L
Sbjct: 133 DADEESEDESSESTPLRPQESSSSSHGCFQLEALQEK-LKLLEEENEHLRSEASH----L 187
Query: 498 DNNTLADKEEYQDKLQQLQKSC 519
T Y++K QQL C
Sbjct: 188 KTET----VTYEEKEQQLVNDC 205
>gnl|CDD|220112 pfam09110, HAND, HAND. The HAND domain adopts a secondary
structure consisting of four alpha helices, three of
which (H2, H3, H4) form an L-like configuration. Helix
H2 runs antiparallel to helices H3 and H4, packing
closely against helix H4, whilst helix H1 reposes in the
concave surface formed by these three helices and runs
perpendicular to them. The domain confers DNA and
nucleosome binding properties to the protein.
Length = 109
Score = 28.0 bits (63), Expect = 5.4
Identities = 14/48 (29%), Positives = 26/48 (54%), Gaps = 4/48 (8%)
Query: 406 VTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKER 453
V D G ++ + K +L +E+ID +AE +E+E++K+R
Sbjct: 61 VPLDDVGDGDEEDEEEREAKRKLEQEKID----NAEPLTEEEEEEKQR 104
>gnl|CDD|234567 PRK00005, fmt, methionyl-tRNA formyltransferase; Reviewed.
Length = 309
Score = 28.9 bits (66), Expect = 6.8
Identities = 24/87 (27%), Positives = 36/87 (41%), Gaps = 27/87 (31%)
Query: 290 GAA-VQAAILSGDQSSAIQ-----------DVLLVDVTPLSLGIETAGGVMTKL------ 331
GAA +Q AI++GD + + D+LL P++ +TAG + KL
Sbjct: 116 GAAPIQRAIIAGDAETGVTIMQMDEGLDTGDMLLKAEVPITP-TDTAGELHDKLAELGAD 174
Query: 332 --------IERNTRIPCKQTQTFTTYA 350
+E T P Q + TYA
Sbjct: 175 LLVETLKGLEDGTLTPIPQDEEGVTYA 201
>gnl|CDD|224980 COG2069, CdhD, CO dehydrogenase/acetyl-CoA synthase delta subunit
(corrinoid Fe-S protein) [Energy production and
conversion].
Length = 403
Score = 29.0 bits (65), Expect = 7.4
Identities = 11/22 (50%), Positives = 14/22 (63%)
Query: 162 AGLNVMRIVNEPTAAALAYGLD 183
GL RIV +PT AL YG++
Sbjct: 275 RGLPRDRIVMDPTTCALGYGIE 296
>gnl|CDD|218636 pfam05557, MAD, Mitotic checkpoint protein. This family consists
of several eukaryotic mitotic checkpoint (Mitotic arrest
deficient or MAD) proteins. The mitotic spindle
checkpoint monitors proper attachment of the bipolar
spindle to the kinetochores of aligned sister chromatids
and causes a cell cycle arrest in prometaphase when
failures occur. Multiple components of the mitotic
spindle checkpoint have been identified in yeast and
higher eukaryotes. In S.cerevisiae, the existence of a
Mad1-dependent complex containing Mad2, Mad3, Bub3 and
Cdc20 has been demonstrated.
Length = 722
Score = 29.1 bits (65), Expect = 7.4
Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Query: 422 KNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTES 481
K D+ + +KE I R+ ND + + + LE+ + +++ L++ +L E+
Sbjct: 155 KEDQLKEAKESISRIKNDLSEMQCRAQNADTEL---KLLESELEELREQLEECQKELAEA 211
Query: 482 EK 483
EK
Sbjct: 212 EK 213
>gnl|CDD|234667 PRK00149, dnaA, chromosomal replication initiation protein;
Reviewed.
Length = 401
Score = 28.9 bits (66), Expect = 7.9
Identities = 14/29 (48%), Positives = 15/29 (51%), Gaps = 5/29 (17%)
Query: 229 EDFDNRLVSHL----AEEFKRKCRSASDV 253
E F N V+ L EEFK K RS DV
Sbjct: 138 EKFTNDFVNALRNNTMEEFKEKYRSV-DV 165
>gnl|CDD|239972 cd04599, CBS_pair_GGDEF_assoc2, This cd contains two tandem
repeats of the cystathionine beta-synthase (CBS pair)
domains in association with the GGDEF
(DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain
has been suggested to be homologous to the adenylyl
cyclase catalytic domain and is thought to be involved
in regulating cell surface adhesiveness in bacteria.
CBS is a small domain originally identified in
cystathionine beta-synthase and subsequently found in a
wide range of different proteins. CBS domains usually
come in tandem repeats, which associate to form a
so-called Bateman domain or a CBS pair which is
reflected in this model. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains. It has been proposed that the
CBS domain may play a regulatory role, although its
exact function is unknown.
Length = 105
Score = 27.4 bits (61), Expect = 8.2
Identities = 11/30 (36%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 46 RLIGDA-AKNQVAMNPRNTVFDAKRLIGRK 74
RL+ DA + V ++P ++ +AKRL+ K
Sbjct: 51 RLVADAMTREVVTISPEASLLEAKRLMEEK 80
>gnl|CDD|219581 pfam07795, DUF1635, Protein of unknown function (DUF1635). The
members of this family include sequences that are parts
of hypothetical proteins expressed by plant species. The
region in question is about 170 amino acids long.
Length = 214
Score = 28.3 bits (63), Expect = 8.4
Identities = 15/59 (25%), Positives = 30/59 (50%), Gaps = 6/59 (10%)
Query: 457 RNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQL 515
R +L+ F ++Q K+ +E+ R +E L L T+ +++E ++LQ+L
Sbjct: 7 RQSLQYTTFELEQT------KMVANEELRKHDEQVIQLLDLLKKTIKERDEALEQLQRL 59
>gnl|CDD|182109 PRK09848, PRK09848, glucuronide transporter; Provisional.
Length = 448
Score = 28.6 bits (64), Expect = 8.6
Identities = 20/62 (32%), Positives = 30/62 (48%), Gaps = 4/62 (6%)
Query: 165 NVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDT 224
NV+RIV +P +L L LK R + + +G +S ++ +LF VR DT
Sbjct: 207 NVVRIVAQP---SLKISLQ-TLKRNRPLFMLCIGALCVLISTFAVSASSLFYVRYVLNDT 262
Query: 225 HL 226
L
Sbjct: 263 GL 264
>gnl|CDD|218896 pfam06098, Radial_spoke_3, Radial spoke protein 3. This family
consists of several radial spoke protein 3 (RSP3)
sequences. Eukaryotic cilia and flagella present in
diverse types of cells perform motile, sensory, and
developmental functions in organisms from protists to
humans. They are centred by precisely organised,
microtubule-based structures, the axonemes. The axoneme
consists of two central singlet microtubules, called the
central pair, and nine outer doublet microtubules. These
structures are well-conserved during evolution. The
outer doublet microtubules, each composed of A and B
sub-fibres, are connected to each other by nexin links,
while the central pair is held at the centre of the
axoneme by radial spokes. The radial spokes are T-shaped
structures extending from the A-tubule of each outer
doublet microtubule to the centre of the axoneme. Radial
spoke protein 3 (RSP3), is present at the proximal end
of the spoke stalk and helps in anchoring the radial
spoke to the outer doublet. It is thought that radial
spokes regulate the activity of inner arm dynein through
protein phosphorylation and dephosphorylation.
Length = 288
Score = 28.5 bits (64), Expect = 9.0
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 4/50 (8%)
Query: 430 KEEIDRMINDAERYKDEDEKQKERISARNNLEAY----VFNVKQALDDAG 475
+EE +R + K +++ E+I+AR + Y V NV +L+D+G
Sbjct: 186 REEKERRKKQDKERKQREKETAEKIAARAFAQGYLSDLVPNVFSSLEDSG 235
>gnl|CDD|235766 PRK06276, PRK06276, acetolactate synthase catalytic subunit;
Reviewed.
Length = 586
Score = 29.0 bits (65), Expect = 9.0
Identities = 8/31 (25%), Positives = 18/31 (58%)
Query: 494 LKWLDNNTLADKEEYQDKLQQLQKSCMPLMS 524
L L + +K E+ +++++L+K +P M
Sbjct: 329 LAELMKKEIKNKSEWLERVKKLKKESIPRMD 359
>gnl|CDD|227453 COG5124, COG5124, Protein predicted to be involved in meiotic
recombination [Cell division and chromosome partitioning
/ General function prediction only].
Length = 209
Score = 28.4 bits (63), Expect = 9.2
Identities = 27/105 (25%), Positives = 40/105 (38%), Gaps = 27/105 (25%)
Query: 413 SGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALD 472
S KSQ + D L K++I + D YK+E +K+K
Sbjct: 71 SFKSQTLQKLYDSSELLKKKIQEVKQDIATYKEEIDKEKATRR----------------- 113
Query: 473 DAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 517
K TE +K+ RE K +++E + KL LQK
Sbjct: 114 ---KKFTEGQKNYNREALLEKRK-------KEQDEIKKKLNSLQK 148
>gnl|CDD|151935 pfam11498, Activator_LAG-3, Transcriptional activator LAG-3. The
C.elegans Notch pathway, involved in the control of
growth, differentiation and patterning in animal
development, relies on either of the receptors GLP-1 or
LIN-12. Both these receptors promote signalling by the
recruitment of LAG-3 to target promoters, where it then
acts as a transcriptional activator. LAG-3 works as a
ternary complex together with the DNA binding protein,
LAG-1.
Length = 476
Score = 28.8 bits (63), Expect = 9.3
Identities = 27/98 (27%), Positives = 45/98 (45%), Gaps = 2/98 (2%)
Query: 18 FQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPRNTVFDAKRLIGRKFD 76
F++ + E+IAN Q T + FT D ER + KN+ AMN A R G+ D
Sbjct: 62 FEKARPEMIAN-QRAVTAHLFHRFTEDEERKRMEHQKNKEAMNASTAAPSASRNGGQHID 120
Query: 77 DPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPE 114
+ K + D+ P + + + + Q + G+ P+
Sbjct: 121 NRKRRNDVVVAPLSAEEEWKRAQQQQHWMGQAAPMHPQ 158
>gnl|CDD|236394 PRK09169, PRK09169, hypothetical protein; Validated.
Length = 2316
Score = 28.9 bits (65), Expect = 9.6
Identities = 24/66 (36%), Positives = 29/66 (43%), Gaps = 8/66 (12%)
Query: 125 KETAEAYLGHSVRDA---VITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY- 180
E A A VRDA + +PA A + + A GL VMRI N A Y
Sbjct: 2164 PEQAAA----RVRDALRWEVVLPAEGFGAAVEQARQALGAKGLRVMRINNGFAAPDTTYA 2219
Query: 181 GLDKNL 186
GL+ NL
Sbjct: 2220 GLNVNL 2225
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.315 0.132 0.374
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 27,650,968
Number of extensions: 2727081
Number of successful extensions: 2539
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2369
Number of HSP's successfully gapped: 158
Length of query: 549
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 447
Effective length of database: 6,413,494
Effective search space: 2866831818
Effective search space used: 2866831818
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 61 (27.3 bits)