RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3431
(549 letters)
>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus}
SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*
Length = 554
Score = 869 bits (2247), Expect = 0.0
Identities = 334/550 (60%), Positives = 391/550 (71%), Gaps = 79/550 (14%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPR 61
PA+GIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 5 PAVGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 64
Query: 62 NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVL 121
NTVFDAKRLIGR+FDD +Q DMKHWPF VVND +PK+QVE+KGE K+F PEE+SSMVL
Sbjct: 65 NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL 124
Query: 122 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG 181
TKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+AYG
Sbjct: 125 TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 184
Query: 182 LDKNLKGERNVLI-------FD---------------------LGGGTFDVSI------- 206
LDK + ERNVLI FD LGG FD +
Sbjct: 185 LDKKVGAERNVLIFDLGGGTFDVSILTIAAGIFEVKSTAGDTHLGGEDFDNRMVNHFIAE 244
Query: 207 --------LSIDEGALFEVR----------STAGDTHL------GGEDFDNR-------- 234
+S ++ A+ +R S++ + G DF
Sbjct: 245 FKRKHKKDISENKRAVRRLRTACERAKRTLSSSTQASIEIDSLYEGIDFYTSITRARFEE 304
Query: 235 LVSHLAEEFKRKCRSA-SDVGDHHGDAHFVV-----------QSLLQNFFCGKSLNLSIN 282
L + L A D H +V Q LLQ+FF GK LN SIN
Sbjct: 305 LNADLFRGTLDPVEKALRDAKLDKSQIHDIVLVGGSTRIPKIQKLLQDFFNGKELNKSIN 364
Query: 283 PDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQ 342
PDEAVAYGAAVQAAILSGD+S +QD+LL+DVTPLSLGIETAGGVMT LI+RNT IP KQ
Sbjct: 365 PDEAVAYGAAVQAAILSGDKSENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQ 424
Query: 343 TQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANG 402
TQTFTTY+DNQP V IQV+EGERAMTKDNNLLG F+LTGIPPAPRGVP+I+VTFD+DANG
Sbjct: 425 TQTFTTYSDNQPGVLIQVYEGERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANG 484
Query: 403 ILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEA 462
ILNV+A D S+GK ITI NDKGRLSKE+I+RM+ +AE+YK EDEKQ++++S++N+LE+
Sbjct: 485 ILNVSAVDKSTGKENKITITNDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLES 544
Query: 463 YVFNVKQALD 472
Y FN+K ++
Sbjct: 545 YAFNMKATVE 554
>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor,
protein folding, ATP-binding, Ca binding, chaperone,
nucleotide-binding, phosphoprotein; HET: ATP; 2.30A
{Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*
Length = 675
Score = 799 bits (2066), Expect = 0.0
Identities = 139/643 (21%), Positives = 248/643 (38%), Gaps = 109/643 (16%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPR 61
G+DLG S +AV + ++I+ N+ NR+TPS V F R +G+ KN+ N +
Sbjct: 3 TPFGLDLGNNNSVLAVARNRGIDIVVNEVSNRSTPSVVGFGPKNRYLGETGKNKQTSNIK 62
Query: 62 NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVN-DRSKPKIQVEFKGERKTFAPEEISSMV 120
NTV + KR+IG + P +Q+ KH+ +V D K +V F GE+ F+ ++++M
Sbjct: 63 NTVANLKRIIGLDYHHPDFEQESKHFTSKLVELDDKKTGAEVRFAGEKHVFSATQLAAMF 122
Query: 121 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 180
+ K+K+T + ++ D I VP ++ + QR DA IAGLN +RIVN+ TAA ++Y
Sbjct: 123 IDKVKDTVKQDTKANITDVCIAVPPWYTEEQRYNIADAARIAGLNPVRIVNDVTAAGVSY 182
Query: 181 GLDKNL-----KGERNVLIFD----------------------------LGGGTFDVSI- 206
G+ K + R V D GG FD++I
Sbjct: 183 GIFKTDLPEGEEKPRIVAFVDIGHSSYTCSIMAFKKGQLKVLGTACDKHFGGRDFDLAIT 242
Query: 207 --------------LSIDEGALFEVR----------STAGDTHL------GGEDFDNR-- 234
+ + A + S + D ++
Sbjct: 243 EHFADEFKTKYKIDIRENPKAYNRILTAAEKLKKVLSANTNAPFSVESVMNDVDVSSQLS 302
Query: 235 ------LVSHLAEEFKRKCRSA-SDVGDHHGDAHFVV-----------QSLLQNFFCGKS 276
LV L E A + + FV + + F GK
Sbjct: 303 REELEELVKPLLERVTEPVTKALAQAKLSAEEVDFVEIIGGTTRIPTLKQSISEAF-GKP 361
Query: 277 LNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGV----MTKLI 332
L+ ++N DEA+A GAA AI S ++ D+ P S+ V ++
Sbjct: 362 LSTTLNQDEAIAKGAAFICAIHSPTL--RVRPFKFEDIHPYSVSYSWDKQVEDEDHMEVF 419
Query: 333 ERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGI--PPAPRGVP 390
+ P + T D A + T + + +++TG+ P VP
Sbjct: 420 PAGSSFPSTKLITLNRTGDFSMAASYTDITQLPPNTPEQ--IANWEITGVQLPEGQDSVP 477
Query: 391 KIDVTFDLDANGILNV----------TAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDA 440
+ + D +G+ + DT + K ++TI L ++++ +I
Sbjct: 478 -VKLKLRCDPSGLHTIEEAYTIEDIEAGSDTKTVKKDDLTIVAHTFGLDAKKLNELIEKE 536
Query: 441 ERYKDEDEKQKERISARNNLEAYVFNVKQALDDA-GNKLTESEKSRCREECDATLKWL-D 498
+D+ E +N LE Y++ ++ L++ +++EK++ + + +WL D
Sbjct: 537 NEMLAQDKLVAETEDRKNTLEEYIYTLRGKLEEEYAPFASDAEKTKLQGMLNKAEEWLYD 596
Query: 499 NNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRG 541
+ K +Y K ++L + + +
Sbjct: 597 EGFDSIKAKYIAKYEELASLGNIIRGRYLAKEEEKKQAIRSKQ 639
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding,
protein folding, acetylation, ATP-binding, cell inner
membrane; NMR {Escherichia coli}
Length = 605
Score = 626 bits (1617), Expect = 0.0
Identities = 258/613 (42%), Positives = 333/613 (54%), Gaps = 103/613 (16%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPRN 62
IGIDLGTT SCVA+ ++ N +G+RTTPS +A+T E L+G AK Q NP+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
T+F KRLIGR+F D ++Q+D+ PF ++ VE KG + AP +IS+ VL
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG--QKMAPPQISAEVLK 121
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V RI+NEPTAAALAYGL
Sbjct: 122 KMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGL 181
Query: 183 DKNLKGERNVLI-------FD-------------------------LGGGTFDVSIL--- 207
DK G R + + FD LGG FD ++
Sbjct: 182 DKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240
Query: 208 --------SID---------------EGALFEVRS-----------TAGDT---HLGGE- 229
ID E A E+ S TA T H+ +
Sbjct: 241 VEEFKKDQGIDLRNDPLAMQRLKEAAEKAKIELSSAQQTDVNLPYITADATGPKHMNIKV 300
Query: 230 ---DFDNRLVSHLAEEFKRKCRSA-SDVGDHHGDAHFV-----------VQSLLQNFFCG 274
++ LV L + A D G D V VQ + FF G
Sbjct: 301 TRAKLES-LVEDLVNRSIEPLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-G 358
Query: 275 KSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIER 334
K +NPDEAVA GAAVQ +L+GD ++DVLL+DVTPLSLGIET GGVMT LI +
Sbjct: 359 KEPRKDVNPDEAVAIGAAVQGGVLTGD----VKDVLLLDVTPLSLGIETMGGVMTTLIAK 414
Query: 335 NTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDV 394
NT IP K +Q F+T DNQ AVTI V +GER DN LG F+L GI PAPRG+P+I+V
Sbjct: 415 NTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEV 474
Query: 395 TFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERI 454
TFD+DA+GIL+V+AKD +SGK Q ITIK G L+++EI +M+ DAE + D K E +
Sbjct: 475 TFDIDADGILHVSAKDKNSGKEQKITIKASSG-LNEDEIQKMVRDAEANAEADRKFDELV 533
Query: 455 SARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQ 514
RN + + + ++ +++AG+KL +K+ A L DK + K+Q+
Sbjct: 534 QTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKGE---DKAAIEAKMQE 590
Query: 515 LQKSCMPLMSKMH 527
L + LM
Sbjct: 591 LAQVSQKLMEIAQ 603
>3qfu_A 78 kDa glucose-regulated protein homolog; HSP70, KAR2, BIP,
chaperone; HET: ADP; 1.80A {Saccharomyces cerevisiae}
PDB: 3qfp_A 3qml_A 3ldo_A* 3ldl_A 3ldn_A* 3ldp_A*
Length = 394
Score = 570 bits (1471), Expect = 0.0
Identities = 169/245 (68%), Positives = 202/245 (82%), Gaps = 2/245 (0%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPR 61
IGIDLGTTYSCVAV + GK EI+AN+QGNR TPSYVAFTD ERLIGDAAKNQVA NP+
Sbjct: 19 TVIGIDLGTTYSCVAVMKNGKTEILANEQGNRITPSYVAFTDDERLIGDAAKNQVAANPQ 78
Query: 62 NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVL 121
NT+FD KRLIG K++D +Q+D+KH PF VVN KP ++V KGE+K F PEEIS M+L
Sbjct: 79 NTIFDIKRLIGLKYNDRSVQKDIKHLPFNVVNKDGKPAVEVSVKGEKKVFTPEEISGMIL 138
Query: 122 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG 181
KMK+ AE YLG V AV+TVPAYFNDAQRQATKDAG IAGLNV+RIVNEPTAAA+AYG
Sbjct: 139 GKMKQIAEDYLGTKVTHAVVTVPAYFNDAQRQATKDAGTIAGLNVLRIVNEPTAAAIAYG 198
Query: 182 LDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAE 241
LDK+ E ++++DLGGGTFDVS+LSI+ G +FEV++T+GDTHLGGEDFD ++V L +
Sbjct: 199 LDKS-DKEHQIIVYDLGGGTFDVSLLSIENG-VFEVQATSGDTHLGGEDFDYKIVRQLIK 256
Query: 242 EFKRK 246
FK+K
Sbjct: 257 AFKKK 261
Score = 82.2 bits (204), Expect = 4e-17
Identities = 24/36 (66%), Positives = 29/36 (80%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 299
VQ LL+++F GK + INPDEAVAYGAAVQA +LS
Sbjct: 359 VQQLLESYFDGKKASKGINPDEAVAYGAAVQAGVLS 394
>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex,
ATP-binding, chaperone, nucleotide-BIND phosphoprotein,
stress response; HET: ADP; 1.30A {Homo sapiens} PDB:
1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A*
1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A*
3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* 1ngf_A* ...
Length = 404
Score = 569 bits (1469), Expect = 0.0
Identities = 206/248 (83%), Positives = 224/248 (90%), Gaps = 3/248 (1%)
Query: 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 60
MPAIGIDLGTTYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 23 MPAIGIDLGTTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 82
Query: 61 RNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMV 120
NT+FDAKRLIGRKF+D +Q DMKHWPF VV++ KPK+QVE+KGE KTF PEEISSMV
Sbjct: 83 TNTIFDAKRLIGRKFEDATVQSDMKHWPFRVVSEGGKPKVQVEYKGETKTFFPEEISSMV 142
Query: 121 LTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAY 180
LTKMKE AEAYLG V AVITVPAYFND+QRQATKDAG I GLNV+RI+NEPTAAA+AY
Sbjct: 143 LTKMKEIAEAYLGGKVHSAVITVPAYFNDSQRQATKDAGTITGLNVLRIINEPTAAAIAY 202
Query: 181 GLDK--NLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSH 238
GLDK GE+NVLIFDLGGGTFDVSIL+I++G +FEV+STAGDTHLGGEDFDNR+VSH
Sbjct: 203 GLDKKGCAGGEKNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVSH 261
Query: 239 LAEEFKRK 246
LAEEFKRK
Sbjct: 262 LAEEFKRK 269
Score = 87.2 bits (217), Expect = 1e-18
Identities = 31/38 (81%), Positives = 33/38 (86%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGD 301
+Q LLQ+FF GK LN SINPDEAVAYGAAVQAAIL GD
Sbjct: 367 IQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILIGD 404
>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain
rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus
HTA426}
Length = 509
Score = 564 bits (1457), Expect = 0.0
Identities = 237/543 (43%), Positives = 298/543 (54%), Gaps = 121/543 (22%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRN 62
IGIDLGTT SCVAV + G+V++I N +GNRTTPS VAF + ERL+G+ AK Q NP N
Sbjct: 4 IIGIDLGTTNSCVAVLEGGEVKVIPNPEGNRTTPSVVAFKNGERLVGEVAKRQAITNP-N 62
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
T+ KR +G + +VE +G K + P+EIS+++L
Sbjct: 63 TIISIKRHMGTDY-------------------------KVEIEG--KQYTPQEISAIILQ 95
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
+K AE YLG V AVITVPAYFNDAQRQATKDAG IAGL V RI+NEPTAAALAYGL
Sbjct: 96 YLKSYAEDYLGEPVTRAVITVPAYFNDAQRQATKDAGRIAGLEVERIINEPTAAALAYGL 155
Query: 183 DKNLKGERNVLIFD----------------------------LGGGTFDVSIL------- 207
DK + ++ +L++D LGG FD I+
Sbjct: 156 DK--EEDQTILVYDLGGGTFDVSILELGDGVFEVKATAGDNHLGGDDFDQVIIDYLVNQF 213
Query: 208 ----SID---------------EGALFEVRS-----------TAGDT---HLGGE----D 230
ID E A E+ +A + HL
Sbjct: 214 KQEHGIDLSKDKMALQRLKDAAEKAKKELSGVTQTQISLPFISANENGPLHLEMTLTRAK 273
Query: 231 FDNRLVSHLAEEFKRKCRSA-SDVGDHHGDAHFV-----------VQSLLQNFFCGKSLN 278
F+ L +HL E R A D G D V VQ ++ GK +
Sbjct: 274 FE-ELSAHLVERTMGPVRQALQDAGLTPADIDKVILVGGSTRIPAVQEAIKREL-GKEPH 331
Query: 279 LSINPDEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRI 338
+NPDE VA GAA+Q +++G+ ++DV+L+DVTPLSLGIET GGV TKLIERNT I
Sbjct: 332 KGVNPDEVVAIGAAIQGGVIAGE----VKDVVLLDVTPLSLGIETMGGVFTKLIERNTTI 387
Query: 339 PCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDL 398
P ++Q FTT ADNQ V I V +GER M DN LG F LTGIPPAPRGVP+I+VTFD+
Sbjct: 388 PTSKSQVFTTAADNQTTVDIHVLQGERPMAADNKSLGRFQLTGIPPAPRGVPQIEVTFDI 447
Query: 399 DANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARN 458
DANGI++V AKD + K Q+ITIK+ G LS+EEI RMI +AE + D K+KE RN
Sbjct: 448 DANGIVHVRAKDLGTNKEQSITIKSSSG-LSEEEIQRMIKEAEENAEADRKRKEAAELRN 506
Query: 459 NLE 461
+
Sbjct: 507 EAD 509
>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor,
coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia
coli} SCOP: c.55.1.1 c.55.1.1
Length = 383
Score = 402 bits (1035), Expect = e-137
Identities = 143/246 (58%), Positives = 178/246 (72%), Gaps = 8/246 (3%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDT-ERLIGDAAKNQVAMNPRN 62
IGIDLGTT SCVA+ ++ N +G+RTTPS +A+T E L+G AK Q NP+N
Sbjct: 5 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 64
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
T+F KRLIGR+F D ++Q+D+ PF ++ + VE KG + AP +IS+ VL
Sbjct: 65 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAADNG-DAWVEVKG--QKMAPPQISAEVLK 121
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V RI+NEPTAAALAYGL
Sbjct: 122 KMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGL 181
Query: 183 DKNLKGERNVLIFDLGGGTFDVSILSIDEGA---LFEVRSTAGDTHLGGEDFDNRLVSHL 239
DK G R + ++DLGGGTFD+SI+ IDE FEV +T GDTHLGGEDFD+RL+++L
Sbjct: 182 DKG-TGNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYL 240
Query: 240 AEEFKR 245
EEFK+
Sbjct: 241 VEEFKK 246
>3dob_A Heat shock 70 kDa protein F44E5.5; structural genomics,
APC90015.11, peptide-binding domain, HS 2, protein
structure initiative; 2.39A {Caenorhabditis elegans}
Length = 152
Score = 331 bits (851), Expect = e-113
Identities = 104/149 (69%), Positives = 134/149 (89%)
Query: 313 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 372
DV PLSLGIETAGGVMT LI+RNTRIP K +TFTTYADNQP V+IQV+EGERAMT+DN+
Sbjct: 4 DVAPLSLGIETAGGVMTNLIDRNTRIPTKACKTFTTYADNQPGVSIQVYEGERAMTRDNH 63
Query: 373 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 432
LGTF+L+GIPPAPRGVP+I+VTF++DANGILNV+A+D S+GKS ITI+N+KGRL++ +
Sbjct: 64 RLGTFELSGIPPAPRGVPQIEVTFNIDANGILNVSAEDKSTGKSNRITIQNEKGRLTQSD 123
Query: 433 IDRMINDAERYKDEDEKQKERISARNNLE 461
IDRM+++A++++ ED +Q+ER+ ARN LE
Sbjct: 124 IDRMVHEAKQFEKEDGEQRERVQARNQLE 152
>3h0x_A 78 kDa glucose-regulated protein homolog; structural genomics,
APC89502.3, peptide binding, chaperone, BIP, PSI-2;
1.92A {Saccharomyces cerevisiae} PDB: 1ckr_A 7hsc_A
Length = 152
Score = 331 bits (850), Expect = e-113
Identities = 98/149 (65%), Positives = 122/149 (81%)
Query: 313 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 372
DV L+LGIET GGVMT LI+RNT IP K++Q F+T DNQP V I+V+EGERAM+KDNN
Sbjct: 4 DVNALTLGIETTGGVMTPLIKRNTAIPTKKSQIFSTAVDNQPTVMIKVYEGERAMSKDNN 63
Query: 373 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 432
LLG F+LTGIPPAPRGVP+I+VTF LDANGIL V+A D +GKS++ITI NDKGRL++EE
Sbjct: 64 LLGKFELTGIPPAPRGVPQIEVTFALDANGILKVSATDKGTGKSESITITNDKGRLTQEE 123
Query: 433 IDRMINDAERYKDEDEKQKERISARNNLE 461
IDRM+ +AE++ ED K ++ +RN LE
Sbjct: 124 IDRMVEEAEKFASEDASIKAKVESRNKLE 152
>2op6_A Heat shock 70 kDa protein D; HSP70/peptide-binding domain,
structural genomics, APC90014. 2, protein structure
initiative; 1.85A {Caenorhabditis elegans}
Length = 152
Score = 327 bits (841), Expect = e-111
Identities = 90/149 (60%), Positives = 119/149 (79%)
Query: 313 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 372
DV PL+LGIET GGVMTKLI RNT IP K++Q F+T AD+Q AV+I ++EGER M DN+
Sbjct: 4 DVNPLTLGIETVGGVMTKLIGRNTVIPTKKSQVFSTAADSQSAVSIVIYEGERPMVMDNH 63
Query: 373 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 432
LG FD+TGIPPAPRGVP+I+VTF++D NGIL+V+A+D +G +TI ND RLS E+
Sbjct: 64 KLGNFDVTGIPPAPRGVPQIEVTFEIDVNGILHVSAEDKGTGNKNKLTITNDHNRLSPED 123
Query: 433 IDRMINDAERYKDEDEKQKERISARNNLE 461
I+RMINDA+++ +D+ QKE++ +RN LE
Sbjct: 124 IERMINDADKFAADDQAQKEKVESRNELE 152
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB:
3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A
1bpr_A 2bpr_A 1dg4_A
Length = 219
Score = 303 bits (777), Expect = e-101
Identities = 103/223 (46%), Positives = 140/223 (62%), Gaps = 4/223 (1%)
Query: 309 VLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 368
VLL+DVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ AVTI V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVTIHVLQGERKRA 60
Query: 369 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRL 428
DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G L
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG-L 119
Query: 429 SKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCRE 488
+++EI +M+ DAE + D K +E + RN + + + ++ +++AG+KL +K+
Sbjct: 120 NEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIES 179
Query: 489 ECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAG 531
A L DK + K+Q+L + LM
Sbjct: 180 ALTALETALKGE---DKAAIEAKMQELAQVSQKLMEIAQQQHA 219
>3n8e_A Stress-70 protein, mitochondrial; beta-sandwich, helix, substrate
binding domain, structural G consortium, SGC, chaperone;
2.80A {Homo sapiens}
Length = 182
Score = 285 bits (731), Expect = 1e-94
Identities = 90/179 (50%), Positives = 122/179 (68%), Gaps = 5/179 (2%)
Query: 294 QAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQ 353
L + +DVTPLSLGIET GGV TKLI RNT IP K++Q F+T AD Q
Sbjct: 9 SGVDLGTE----NLYFQSMDVTPLSLGIETLGGVFTKLINRNTTIPTKKSQVFSTAADGQ 64
Query: 354 PAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSS 413
V I+V +GER M DN LLG F L GIPPAPRGVP+I+VTFD+DANGI++V+AKD +
Sbjct: 65 TQVEIKVCQGEREMAGDNKLLGQFTLIGIPPAPRGVPQIEVTFDIDANGIVHVSAKDKGT 124
Query: 414 GKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALD 472
G+ Q I I++ G LSK++I+ M+ +AE+Y +ED ++KER+ A N E + + + ++
Sbjct: 125 GREQQIVIQSSGG-LSKDDIENMVKNAEKYAEEDRRKKERVEAVNMAEGIIHDTETKME 182
>1u00_A HSC66, chaperone protein HSCA; DNAK, HSP70; 1.95A {Escherichia
coli} SCOP: a.8.4.1 b.130.1.1
Length = 227
Score = 281 bits (722), Expect = 1e-92
Identities = 73/225 (32%), Positives = 114/225 (50%), Gaps = 5/225 (2%)
Query: 313 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 372
DV PLSLG+ET GG++ K+I RNT IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 373 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 432
L F L GIP P G I VTF +DA+G+L+VTA + S+G +I +K G L+ E
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG-LTDSE 120
Query: 433 IDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDA 492
I MI D+ Y ++D K + + + ++ AL L+ +E+ +
Sbjct: 121 IASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVIDDAAAH 180
Query: 493 TLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSK-MHGGAGGASAG 536
+ + D + + ++ + K ++ M A G
Sbjct: 181 LSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQSVRRALKG 222
>3dqg_A Heat shock 70 kDa protein F; structural genomics, APC90008.12,
HSP70 protein, peptide-BIN domain, PSI-2, protein
structure initiative; 1.72A {Caenorhabditis elegans}
Length = 151
Score = 256 bits (657), Expect = 4e-84
Identities = 88/149 (59%), Positives = 111/149 (74%), Gaps = 1/149 (0%)
Query: 313 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 372
DVTPLSLGIET GG+MTKLI RNT IP K++Q F+T AD Q V I+VF+GER M N
Sbjct: 4 DVTPLSLGIETLGGIMTKLITRNTTIPTKKSQVFSTAADGQTQVQIKVFQGEREMATSNK 63
Query: 373 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEE 432
LLG F L GIPPAPRGVP+++VTFD+DANGI+NV+A+D +GK Q I I++ G LSK++
Sbjct: 64 LLGQFSLVGIPPAPRGVPQVEVTFDIDANGIVNVSARDRGTGKEQQIVIQSSGG-LSKDQ 122
Query: 433 IDRMINDAERYKDEDEKQKERISARNNLE 461
I+ MI +AE+ ED K+KE + N E
Sbjct: 123 IENMIKEAEKNAAEDAKRKELVEVINQAE 151
>1q5l_A Chaperone protein DNAK; HSP70, chaperone, heat shock protein; NMR
{Escherichia coli} SCOP: b.130.1.1
Length = 135
Score = 225 bits (575), Expect = 4e-72
Identities = 75/132 (56%), Positives = 92/132 (69%)
Query: 295 AAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQP 354
++ + +VDVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ
Sbjct: 3 SSHHHHHHGLVPRGSHMVDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQS 62
Query: 355 AVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSG 414
AVTI V +GER DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SG
Sbjct: 63 AVTIHVLQGERKRAADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSG 122
Query: 415 KSQNITIKNDKG 426
K Q ITIK G
Sbjct: 123 KEQKITIKASSG 134
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A
{Caenorhabditis elegans}
Length = 120
Score = 134 bits (339), Expect = 7e-38
Identities = 40/118 (33%), Positives = 66/118 (55%), Gaps = 8/118 (6%)
Query: 440 AERYKDEDEKQKERISARNNLEAYVFNVKQALDDA--GNKLTESEKSRCREECDATLKWL 497
+ + + LE+Y FN+KQ ++D +K++ +K + ++CD LKWL
Sbjct: 3 SSHHHHHHSSGLVPRGSHMGLESYAFNLKQTIEDEKLKDKISPEDKKKIEDKCDEILKWL 62
Query: 498 DNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRG------GPTVEEVD 549
D+N A+KEE++ + + L+ P++SK++ AGGA G P G GPT+EEVD
Sbjct: 63 DSNQTAEKEEFEHQQKDLEGLANPIISKLYQSAGGAPPGAAPGGAAGGAGGPTIEEVD 120
>3lof_A Heat shock 70 kDa protein 1; structural genomics, HSPA1B, HSP70,
PSI-2, prote structure initiative; 2.40A {Homo sapiens}
PDB: 2lmg_A
Length = 113
Score = 118 bits (296), Expect = 7e-32
Identities = 44/111 (39%), Positives = 71/111 (63%), Gaps = 10/111 (9%)
Query: 449 KQKERISARNNLEAYVFNVKQALDDAGN--KLTESEKSRCREECDATLKWLDNNTLADKE 506
ER+SA+N LE+Y FN+K A++D G K++E++K + ++C + WLD NTLA+K+
Sbjct: 3 AAAERVSAKNALESYAFNMKSAVEDEGLKGKISEADKKKVLDKCQEVISWLDANTLAEKD 62
Query: 507 EYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRG--------GPTVEEVD 549
E++ K ++L++ C P++S ++ GAGG G GPT+EEVD
Sbjct: 63 EFEHKRKELEQVCNPIISGLYQGAGGPGPGGFGAQGPKGGSGSGPTIEEVD 113
>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization
EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A
{Carboxydothermus hydrogenoformans z-29organism_taxid}
Length = 272
Score = 110 bits (278), Expect = 2e-27
Identities = 31/145 (21%), Positives = 56/145 (38%), Gaps = 19/145 (13%)
Query: 115 EISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT 174
+ ++ ++K E LG + A +P +A A AGL ++ +V+EP
Sbjct: 71 IGAIQIVRELKAKVERLLGSELFQAATAIPPGTVGRNAEACGHVVAGAGLELVTLVDEPV 130
Query: 175 AAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNR 234
AAA A G++ ++ D+GGGT ++++ + D GG
Sbjct: 131 AAARALGINDG-------IVVDIGGGTTGIAVIEKGKIT------ATFDEPTGGTHLSLV 177
Query: 235 LVSHL------AEEFKRKCRSASDV 253
L AE K+ ++
Sbjct: 178 LAGSYKIPFEEAETIKKDFSRHREI 202
>1ud0_A HSC70, 70 kDa heat-shock-like protein; chaperone; 3.45A {Rattus
norvegicus} SCOP: a.8.4.1
Length = 113
Score = 105 bits (262), Expect = 3e-27
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 15/112 (13%)
Query: 453 RISARNNLEAYVFNVKQALDDA--GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQD 510
+ LE+Y FN+K ++D K+ + +K + ++C+ + WLD N A+KEE++
Sbjct: 2 VPRGSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEH 61
Query: 511 KLQQLQKSCMPLMSKMHGGAGGASAGDMPRG-------------GPTVEEVD 549
+ ++L+K C P+++K++ AGG G GPT+EEVD
Sbjct: 62 QQKELEKVCNPIITKLYQSAGGMPGGMPGGFPGGGAPPSGGASSGPTIEEVD 113
>2fsj_A Hypothetical protein TA0583; actin homologs, archaea, ATPase, MREB,
PARM, structural PROT; 1.90A {Thermoplasma acidophilum}
SCOP: c.55.1.12 c.55.1.12 PDB: 2fsk_A 2fsn_A*
Length = 346
Score = 86.8 bits (214), Expect = 9e-19
Identities = 44/259 (16%), Positives = 83/259 (32%), Gaps = 54/259 (20%)
Query: 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 60
M +G+D+G + + GK I PS A T+TE ++ +
Sbjct: 21 MVVVGLDVGYGDT-KVIGVDGKRIIF---------PSRWAVTETESWGIGGKIPVLSTDG 70
Query: 61 RNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMV 120
T F + G+ I+ A +E ++
Sbjct: 71 GQTKF----IYGKYASGNNIRVPQG----------------------DGRLASKEAFPLI 104
Query: 121 LTKMKETAEAYLGHSVRDAVIT-VPAYFNDAQRQATKDA------------GAIAGLNVM 167
+ E+ G V + + P D + +A K+A G + N+
Sbjct: 105 AAALWESGIHNDGSPVDLVIGSGTPLGTFDLEVKAAKEALENKVLTVTGPEGEVRQFNIT 164
Query: 168 RIVNEPTAAALAYGL---DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDT 224
R++ P A L + ++ D+G T DV +++ + V +
Sbjct: 165 RLIMRPQGVGAALYLLNQGIIEQQPGYGVVIDVGSRTTDVLTINLMDMEP--VVELSFSL 222
Query: 225 HLGGEDFDNRLVSHLAEEF 243
+G D + L +A+E
Sbjct: 223 QIGVGDAISALSRKIAKET 241
>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural
protein; HET: GDP; 1.90A {Escherichia coli} SCOP:
c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A*
2zhc_A* 3iku_A 3iky_A
Length = 320
Score = 77.2 bits (189), Expect = 1e-15
Identities = 39/243 (16%), Positives = 78/243 (32%), Gaps = 30/243 (12%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPRN 62
+ ID G+T K++ +D + S +F + GD +N
Sbjct: 3 VFIDDGSTNI--------KLQWQESDGTIKQHISPNSFKREWAVSFGDKKVFNYTLNGEQ 54
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
FD + Q D + + E+ +
Sbjct: 55 YSFDPISPDAVVTTNIAWQYS----------DVNVVAVHHALL--TSGLPVSEVDIVCTL 102
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
+ E Y + + + + +++ T + G + ++++ E A
Sbjct: 103 PLTE----YYDRNNQPNTENIERKKANFRKKITLNGGDTFTIKDVKVMPESIPAGYEVLQ 158
Query: 183 DKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEE 242
+ L ++LI DLGG T D+S + G L + GD+ LG + + L+
Sbjct: 159 E--LDELDSLLIIDLGGTTLDISQV---MGKLSGISKIYGDSSLGVSLVTSAVKDALSLA 213
Query: 243 FKR 245
+
Sbjct: 214 RTK 216
>4apw_A ALP12; actin-like protein; 19.70A {Clostridium tetani}
Length = 329
Score = 57.0 bits (137), Expect = 5e-09
Identities = 18/130 (13%), Positives = 36/130 (27%), Gaps = 19/130 (14%)
Query: 138 DAVITVPA--YFNDAQRQATKDA------------GAIAGLNVMRIVNEPTAAALAYGLD 183
V+ P N ++ +D + I + + + +
Sbjct: 107 QLVLACPLSVLRNAKAKEEYRDYIKGNGEITVKVDDKEYSFEITDITIKAEGSGVLFLEQ 166
Query: 184 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 243
+N K + NV + D GG S+ + S G +D R+ L +
Sbjct: 167 ENFKNK-NVAVIDFGGLNMGFSL--YRNCVV--NPSERFIEEHGVKDLIIRVGDALTDLN 221
Query: 244 KRKCRSASDV 253
+
Sbjct: 222 NGNLITNEQA 231
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 55.6 bits (133), Expect = 3e-08
Identities = 67/544 (12%), Positives = 138/544 (25%), Gaps = 210/544 (38%)
Query: 16 AVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRNTVFDAKRLIGRKF 75
++ + +++ I + + + F V +KF
Sbjct: 44 SILSKEEIDHIIM-SKDAVSGTLRLFWTLLS------------KQEEMV--------QKF 82
Query: 76 DDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLTKMKETAEAYLGHS 135
+ ++ + K + + I+ E + P ++ M Y+
Sbjct: 83 VEEVLRINYK-FLMS--------PIKTEQRQ------PSMMTRM-----------YI--E 114
Query: 136 VRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIF 195
RD + +ND Q A NV R L L L+ +NVLI
Sbjct: 115 QRDRL------YNDNQV--------FAKYNVSR---LQPYLKLRQAL-LELRPAKNVLID 156
Query: 196 DLGG-GTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFK------RKCR 248
+ G G + +++D ++ + +FK + C
Sbjct: 157 GVLGSGK---TWVALD--VC----------------LSYKVQCKM--DFKIFWLNLKNCN 193
Query: 249 SASDVGDHHGDAHFVVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILSGDQSSAIQD 308
S V + LQ N + D + + + ++
Sbjct: 194 SPETVLEM-----------LQKLLYQIDPNWTSRSDHSSNI------KLRIHSIQAELRR 236
Query: 309 VLLVDVTPLSLGIETAGGVMTKLIERNTRIP---------CK-----QTQTFTTYADNQP 354
+L L L+ N + CK + + T +
Sbjct: 237 LLKSKPYENCL-----------LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAAT 285
Query: 355 AVTIQVFEGERAMTKDN--NLLGTF---DLTGIPP-APRGVPKIDVTFDLDANGILNVTA 408
I + +T D +LL + +P P + I
Sbjct: 286 TTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNP-------RRLSII----- 333
Query: 409 KDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVK 468
++ + + +K + + I ++
Sbjct: 334 -----------------AESIRDGLAT----WDNWKHVNCDKLTTI------------IE 360
Query: 469 QALDDAGNKLTESEKSRCREEC-----DA-----TLK--WLDNNTLADKEEYQDKLQQLQ 516
+L N L +E + + A L W D K + + +L
Sbjct: 361 SSL----NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFD----VIKSDVMVVVNKLH 412
Query: 517 KSCM 520
K +
Sbjct: 413 KYSL 416
Score = 46.8 bits (110), Expect = 2e-05
Identities = 24/156 (15%), Positives = 50/156 (32%), Gaps = 41/156 (26%)
Query: 397 DLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERI-- 454
+ D + ++ K LSKEEID +I + R+
Sbjct: 32 NFDCKDVQDMP-----------------KSILSKEEIDHIIM-----SKDAVSGTLRLFW 69
Query: 455 --SARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLD--NNTLADKEEY-- 508
++ F V++ L L K+ R+ T +++ + D + +
Sbjct: 70 TLLSKQEEMVQKF-VEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK 128
Query: 509 -----QDKLQQLQKSCMPLMSK----MHGGAG-GAS 534
+L+++ + L + G G G +
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKT 164
Score = 42.1 bits (98), Expect = 5e-04
Identities = 39/232 (16%), Positives = 68/232 (29%), Gaps = 86/232 (37%)
Query: 348 TYADNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVT 407
Y D + VFE A + FD + P+ + + + I+
Sbjct: 17 QYKD-----ILSVFE--DAFVDN------FDCKDVQDMPKSILS-----KEEIDHIIM-- 56
Query: 408 AKDTSSGKSQNITIKNDKGRLSKEEIDRMIND---------AERYKDEDEKQKER----- 453
+KD SG + K +E + + + + K E +Q
Sbjct: 57 SKDAVSGTLRLFWTLLSKQ---EEMVQKFVEEVLRINYKFLMSPIKTEQ-RQPSMMTRMY 112
Query: 454 ISARNNL--EAYVF---NV---------KQALDDAGNKLTESE-----------KS---- 484
I R+ L + VF NV +QAL +L ++ K+
Sbjct: 113 IEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL----LELRPAKNVLIDGVLGSGKTWVAL 168
Query: 485 -RCREECDATLK--------WLDNNTLADKEEYQDKLQQLQKSCMPLMSKMH 527
C ++ WL L + + L+ LQK +
Sbjct: 169 DVCL---SYKVQCKMDFKIFWL---NLKNCNSPETVLEMLQKLLYQIDPNWT 214
>3js6_A Uncharacterized PARM protein; partition, segregation, filament,
unknown function; 1.95A {Staphylococcus aureus}
Length = 355
Score = 52.8 bits (126), Expect = 1e-07
Identities = 31/267 (11%), Positives = 68/267 (25%), Gaps = 59/267 (22%)
Query: 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP 60
+ + +D G + + PS +
Sbjct: 4 VYVMALDFGNGFV-----------KGKINDEKFVIPSRIG------------------RK 34
Query: 61 RNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMV 120
N K + K D + + + + + G+ +
Sbjct: 35 TNENNQLKGFVDNKLDVSEFIINGNNDEVLLFGNDLDKT---TNTGKDTASTNDRYDIKS 91
Query: 121 LTKMKETAEAYLGHSVRDA------VITVPAYFNDAQRQATKDAGAIAGLNVM------- 167
+ E + L V + +P+ +QA + +
Sbjct: 92 FKDLVECSIGLLAREVPEEVVNVVIATGMPSNEIGTDKQAKFEKLLNKSRLIEIDGIAKT 151
Query: 168 ------RIVNEPTAAALAYGLDKNLK----GERNVLIFDLGGGTFDVSILSIDEGALFEV 217
+IV +P L ++ E + D G GT + + V
Sbjct: 152 INVKGVKIVAQPMGTLLDLNMENGKVFKAFTEGKYSVLDFGSGTTIIDTYQ----NMKRV 207
Query: 218 RSTAGDTHLGGEDFDNRLVSHLAEEFK 244
+ + G DF R+ SH++++ +
Sbjct: 208 EEESFVINKGTIDFYKRIASHVSKKSE 234
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 49.3 bits (117), Expect = 3e-06
Identities = 64/405 (15%), Positives = 118/405 (29%), Gaps = 138/405 (34%)
Query: 101 QVEFKGERKTFAPEEISSMVLTKMKETAEAYLG----HSV--------------RDAVIT 142
VE + F +++ ++ L E YL H++ +I
Sbjct: 71 LVE-PSKVGQF--DQVLNLCL---TEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIK 124
Query: 143 VPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGLDKNLKGERNV-LIFDLGG-G 200
Y A +A R ++ + +AL +G + IF GG G
Sbjct: 125 --NYIT---------ARIMAK----RPFDKKSNSAL---FRAVGEGNAQLVAIF--GGQG 164
Query: 201 T----FDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKCRSASDVGDH 256
F+ E+R T+ L+ AE R+ D
Sbjct: 165 NTDDYFE------------ELRDL-YQTY---HVLVGDLIKFSAETLSELIRTTLDAEKV 208
Query: 257 HGDAHFVVQSLLQNFFCGKSLNLSINPDEAVAYGAAV--------QAAILSGDQSSAIQD 308
+ L+N S PD+ + Q A
Sbjct: 209 FTQG-LNILEWLEN--------PSNTPDKDYLLSIPISCPLIGVIQLA-----HYVVTAK 254
Query: 309 VLLVDVTPLSLGIETAG--GVMTKLIERNTRIPCKQTQTFTTYADN-QPAVTIQVFEGER 365
+L TP L G G L+ T + +T ++ ++ + + A+T+ F G R
Sbjct: 255 LL--GFTPGELRSYLKGATGHSQGLV---TAVAIAETDSWESFFVSVRKAITVLFFIGVR 309
Query: 366 AMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANG------ILNVTAKDTSSGKSQNI 419
+ T +PP+ + D N +L+++
Sbjct: 310 C-------YEAYPNTSLPPS--------ILEDSLENNEGVPSPMLSIS------------ 342
Query: 420 TIKNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYV 464
L++E++ +N + ++ IS N + V
Sbjct: 343 -------NLTQEQVQDYVNKTNSHLPAGKQV--EISLVNGAKNLV 378
Score = 47.0 bits (111), Expect = 2e-05
Identities = 51/283 (18%), Positives = 90/283 (31%), Gaps = 89/283 (31%)
Query: 242 EFKRKCRSASDVGDHHGDAHFVVQSLLQNFFCGKSLNLSI---NPDE-AVAYGAAVQAAI 297
+ + ++A DV + D HF + G S+ L I NP + +G I
Sbjct: 1634 DLYKTSKAAQDVWNR-ADNHF-----KDTY--GFSI-LDIVINNPVNLTIHFGGEKGKRI 1684
Query: 298 LSGDQSSAIQDVLLVDVTPLSLGI-ETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPA- 355
+ SA+ +VD + I + T R+ + TQ FT QPA
Sbjct: 1685 --RENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQ-FT-----QPAL 1736
Query: 356 VTIQV--FEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDA------------- 400
++ FE + +G+ D TF A
Sbjct: 1737 TLMEKAAFE---DLKS-----------------KGLIPADATF---AGHSLGEYAALASL 1773
Query: 401 NGILNVTAKDTSS-----GKSQNITIKNDKGRLSKEEI-----DRMINDAERYKDEDEKQ 450
++++ + G + + + D+ S + R+ + + +
Sbjct: 1774 ADVMSI--ESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQ--EALQYV 1829
Query: 451 KERISARNN--LEAYV-FNV----------KQALDDAGNKLTE 480
ER+ R +E V +NV +ALD N L
Sbjct: 1830 VERVGKRTGWLVEI-VNYNVENQQYVAAGDLRALDTVTNVLNF 1871
Score = 43.9 bits (103), Expect = 2e-04
Identities = 56/342 (16%), Positives = 98/342 (28%), Gaps = 115/342 (33%)
Query: 120 VLTKMKETAEAYLGHSVRDAVITVPA----YFNDAQRQATKDAGAIAGLNVMRIVNEPTA 175
V + + G S+ D VI P +F + + ++ N ++ E
Sbjct: 1645 VWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIRE-------NYSAMIFETIV 1697
Query: 176 AALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRST--AGDTHLGGEDFDN 233
D LK E+ IF ++G L + T A L
Sbjct: 1698 -------DGKLKTEK---IFKEINEHSTSYTFRSEKGLLSATQFTQPA----L----T-- 1737
Query: 234 RLVSHLA-EEFKRKCRSASDVGDHHGDAHFVVQSLLQNFFCGKSL-----------NLSI 281
L+ A E+ K + ++ + F G SL +SI
Sbjct: 1738 -LMEKAAFEDLK---------------SKGLIPA--DATFAGHSLGEYAALASLADVMSI 1779
Query: 282 NPDEA---VAY-GAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTR 337
+ V Y G +Q A+ + + + ++ + P + + + ++ER
Sbjct: 1780 --ESLVEVVFYRGMTMQVAVPRDELGRS--NYGMIAINPGRVAASFSQEALQYVVERV-- 1833
Query: 338 IPCKQTQTFTTYA-DNQPAVTIQVFEGERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTF 396
K+T N V G+
Sbjct: 1834 --GKRTGWLVEIVNYNVENQQY-VAAGDLR------------------------------ 1860
Query: 397 DLD-ANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMI 437
LD +LN K Q I I + LS EE++ +
Sbjct: 1861 ALDTVTNVLNFI-------KLQKIDIIELQKSLSLEEVEGHL 1895
Score = 42.3 bits (99), Expect = 4e-04
Identities = 43/279 (15%), Positives = 79/279 (28%), Gaps = 114/279 (40%)
Query: 1 MPAIGIDLGTTY--SCVA--VFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQV 56
M G+DL Y S A V+ ++ + F+ I D N
Sbjct: 1631 M---GMDL---YKTSKAAQDVW----------NRADNHFKDTYGFS-----ILDIVIN-- 1667
Query: 57 AMNPRN-TV-FDAKRLIGRK---------FDDPKIQQDMKHWPFTVVNDRSKPKIQVEFK 105
NP N T+ F ++ G++ F+ + F +N+ S F+
Sbjct: 1668 --NPVNLTIHFGGEK--GKRIRENYSAMIFETIVDGKLKTEKIFKEINEHST---SYTFR 1720
Query: 106 GER----KT-------FAPEEISSMVLTKMKE----TAEAYL-GHSV------------- 136
E+ T + +K A+A GHS+
Sbjct: 1721 SEKGLLSATQFTQPALTL---MEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVM 1777
Query: 137 --RDAVITVPAYFNDAQR-QATKDA----------GAIAGLNVMRIVNEPTAAALAYGLD 183
V V R + A + +N R+ + AL Y ++
Sbjct: 1778 SIESLVEVV------FYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVE 1831
Query: 184 K--------------NLKGERNVLIFDLGGGTFDVSILS 208
+ N++ ++ V G + ++
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYV----AAGDLRALDTVT 1866
Score = 37.7 bits (87), Expect = 0.012
Identities = 55/262 (20%), Positives = 92/262 (35%), Gaps = 84/262 (32%)
Query: 316 PLSL--G-IETAGGVMTKLIERNTRIPCKQTQ-TFTTYADNQPAVTIQVFEGERAMTKDN 371
PL+L G +E L+ + Q Q F P T + F + T
Sbjct: 8 PLTLSHGSLEH-----VLLVPTASFFIASQLQEQFN---KILPEPT-EGFAADDEPTTPA 58
Query: 372 NLLGTFDL----TGIPPAPRG----VPKIDVT-FD---LDANGILNVTAK-----DTSSG 414
L+G F L + + P+ G V + +T F+ L+ N I + AK DT+
Sbjct: 59 ELVGKF-LGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLV 117
Query: 415 KSQNITIKN--DKGRLSKEEIDRMINDA----------------------ERYKDEDEKQ 450
K++ + IKN ++K D+ N A + Y +E
Sbjct: 118 KTKEL-IKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDYFEE---- 172
Query: 451 KERISARNNL----EAYVFNVKQALDDAGNKLTESEKSRCREE------CDATLKWLDNN 500
L + Y V + + L+E ++ E + L+WL+N
Sbjct: 173 ---------LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI-LEWLENP 222
Query: 501 TLADKEEYQDKLQQLQKSCMPL 522
+ ++Y L + SC PL
Sbjct: 223 SNTPDKDY---LLSIPISC-PL 240
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 44.0 bits (103), Expect = 3e-05
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 432 EIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQAL-DDAGNKLTESEKSRCREEC 490
+ DR+ + E + E+Q++R+ + ++Q + A L E + + E+
Sbjct: 76 QADRLTQEPESIRKWREEQRKRLQELDAASK---VMEQEWREKAKKDLEEWNQRQ-SEQV 131
Query: 491 DATLKWLDNNTLADKEEYQD 510
+ K NN +ADK YQ
Sbjct: 132 E---KNKINNRIADKAFYQQ 148
Score = 36.3 bits (83), Expect = 0.014
Identities = 11/66 (16%), Positives = 26/66 (39%), Gaps = 10/66 (15%)
Query: 415 KSQNITIKNDKGRLSKEEIDRMINDAERYKDE------DEKQKERISARNNLEAYVFNVK 468
+ Q ++ + SK A++ +E ++ +K +I+ R +A+ +
Sbjct: 92 EEQRKRLQ-ELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNRIADKAF---YQ 147
Query: 469 QALDDA 474
Q D
Sbjct: 148 QPDADI 153
Score = 31.3 bits (70), Expect = 0.54
Identities = 9/38 (23%), Positives = 19/38 (50%), Gaps = 8/38 (21%)
Query: 481 SEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKS 518
++ R +E ++ KW +EE + +LQ+L +
Sbjct: 75 AQADRLTQEPESIRKW--------REEQRKRLQELDAA 104
Score = 30.9 bits (69), Expect = 0.69
Identities = 11/36 (30%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Query: 480 ESEKSRC-REECDATLKWLDNNTLADKEEYQDKLQQ 514
E E R REE L+ LD + ++E+++K ++
Sbjct: 83 EPESIRKWREEQRKRLQELDAASKVMEQEWREKAKK 118
>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion;
HET: ATP; 2.20A {Thermus thermophilus}
Length = 377
Score = 43.3 bits (102), Expect = 1e-04
Identities = 22/100 (22%), Positives = 36/100 (36%), Gaps = 12/100 (12%)
Query: 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 221
AGL + + +P A + +R L+ D+G + + +L VR
Sbjct: 163 AGLVPVVLDVKPFAGLYPLEARLAEEPDRVFLVLDIGAESTSLVLL--RGDKPLAVRVLT 220
Query: 222 GDTHLGGEDFDNRLVSHL------AEEFKRKCRSASDVGD 255
L G+DF + AEE KR A+ +
Sbjct: 221 ----LSGKDFTEAIARSFNLDLLAAEEVKRTYGMATLPTE 256
>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ,
structural protein; 2.10A {Thermotoga maritima} SCOP:
c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A
Length = 344
Score = 41.7 bits (99), Expect = 4e-04
Identities = 59/264 (22%), Positives = 99/264 (37%), Gaps = 97/264 (36%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAF-TDTERL--IGDAAKNQVAMNP 60
IGIDLGT + V + +G I+ N+ PS +A + T + +G AKN + P
Sbjct: 6 IGIDLGTANTLVFLRGKG---IVVNE------PSVIAIDSTTGEILKVGLEAKNMIGKTP 56
Query: 61 RNTV------------FDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGER 108
+ ++ R F I + KP++
Sbjct: 57 ATIKAIRPMRDGVIADYTVALVMLRYF----INKAKGGMNL------FKPRV-------- 98
Query: 109 KTFAPEEISSMVLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMR 168
VI VP D +R+A DAG AG + +
Sbjct: 99 -------------------------------VIGVPIGITDVERRAILDAGLEAGASKVF 127
Query: 169 IVNEPTAAALAYGLDKNLKGERNV------LIFDLGGGTFDVSILSIDEGALFEVRS--T 220
++ EP AAA+ L+ V ++ D+GGGT +V+++S+ G++ S
Sbjct: 128 LIEEPMAAAIGSNLN--------VEEPSGNMVVDIGGGTTEVAVISL--GSIVTWESIRI 177
Query: 221 AGDTHLGGEDFDNRLVSHLAEEFK 244
AGD + D +V ++ E ++
Sbjct: 178 AGD------EMDEAIVQYVRETYR 195
>3swk_A Vimentin; cytoskeleton, intermediate filament, alpha-helix,
structural; 1.70A {Homo sapiens}
Length = 86
Score = 33.7 bits (78), Expect = 0.022
Identities = 15/62 (24%), Positives = 30/62 (48%), Gaps = 8/62 (12%)
Query: 415 KSQNITIKNDKGRLSKEEIDRMINDAERYKD--EDEKQKERISARNNLEAYVFNVKQALD 472
+ Q + NDK R+ + E D + D R ++ ++E + R E + + +Q +D
Sbjct: 6 RRQVDQLTNDKARV-EVERDNLAEDIMRLREKLQEE-----MLQREEAENTLQSFRQDVD 59
Query: 473 DA 474
+A
Sbjct: 60 NA 61
>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome;
HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T*
1e4f_T* 4a2b_A*
Length = 419
Score = 35.4 bits (82), Expect = 0.039
Identities = 11/95 (11%), Positives = 26/95 (27%), Gaps = 14/95 (14%)
Query: 162 AGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTA 221
+ ++ + + A L K +R V++ +LG + G +
Sbjct: 180 TVKSPFQLKSSLVSTAEGV-LTTPEK-DRGVVVVNLGYNFTGLIA--YKNGVP---IKIS 232
Query: 222 GDTHLGGEDFDN------RLVSHLAEEFKRKCRSA 250
+G + +E +A
Sbjct: 233 YVP-VGMKHVIKDVSAVLDTSFEESERLIITHGNA 266
>2gn0_A Threonine dehydratase catabolic; TDCB, biodegradative threonine
deaminase, PLP, threonine DEH L-threonine metabolism;
HET: LLP; 1.70A {Salmonella typhimurium} PDB: 2gn1_A*
2gn2_A*
Length = 342
Score = 35.2 bits (82), Expect = 0.049
Identities = 17/76 (22%), Positives = 32/76 (42%), Gaps = 15/76 (19%)
Query: 138 DAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT-----AAALAYGLDKNLKGERNV 192
D ++ V D R + + +++ E AA L+ LD +++ + V
Sbjct: 269 DDIVLVS---EDEIRNSMIAL-----IQRNKVITEGAGALACAALLSGKLDSHIQNRKTV 320
Query: 193 LIFDLGGGTFDVSILS 208
I + GG D+S +S
Sbjct: 321 SI--ISGGNIDLSRVS 334
>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone,
actin-like ATPase domain, beta/BETA/alpha swiveling
domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP:
c.8.6.1 c.55.1.6 c.55.1.6
Length = 607
Score = 35.3 bits (81), Expect = 0.060
Identities = 23/93 (24%), Positives = 33/93 (35%), Gaps = 15/93 (16%)
Query: 160 AIAGLNVMRIVNEPTAAALAYGLDKNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRS 219
A V+ E A G + I DLG G+ D +I++ + +
Sbjct: 381 ARLQTEVVVGGVEANMAIA--GALTTPGCAAPLAILDLGAGSTDAAIVNAEGQITAVHLA 438
Query: 220 TAGD-------THLGGEDFDNRLVSHLAEEFKR 245
AG+ T LG ED LAE K+
Sbjct: 439 GAGNMVSLLIKTELGLEDL------SLAEAIKK 465
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.14
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 333 ERNTRIPCKQTQ-TFTTYA-DNQPAVTIQ 359
E+ + K+ Q + YA D+ PA+ I+
Sbjct: 18 EKQA-L--KKLQASLKLYADDSAPALAIK 43
Score = 30.3 bits (67), Expect = 0.79
Identities = 8/33 (24%), Positives = 16/33 (48%), Gaps = 4/33 (12%)
Query: 97 KPKIQVEFKGERKTFAPEEISSMVLTKMKETAE 129
K ++ + + K +A + S+ L +K T E
Sbjct: 19 KQALK-KLQASLKLYADD--SAPALA-IKATME 47
>1fmt_A Methionyl-tRNA FMet formyltransferase; initiator tRNA, translation
initiation; 2.00A {Escherichia coli} SCOP: b.46.1.1
c.65.1.1 PDB: 2fmt_A* 3r8x_A
Length = 314
Score = 32.5 bits (75), Expect = 0.29
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 38/106 (35%)
Query: 290 GAA-VQAAILSGDQSSAIQ-----------DVLLVDVTPLSLGIETAGGVMTKL------ 331
GAA +Q ++ +GD + + D+L P++ +T+G + KL
Sbjct: 119 GAAPIQRSLWAGDAETGVTIMQMDVGLDTGDMLYKLSCPITAE-DTSGTLYDKLAELGPQ 177
Query: 332 --------IERNTRIPCKQTQTFTTYAD-----------NQPAVTI 358
+ T P Q +T TYA+ + A +
Sbjct: 178 GLITTLKQLADGTAKPEVQDETLVTYAEKLSKEEARIDWSLSAAQL 223
>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET:
ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6
c.55.1.6 PDB: 2d0p_A
Length = 610
Score = 32.2 bits (73), Expect = 0.51
Identities = 26/92 (28%), Positives = 34/92 (36%), Gaps = 17/92 (18%)
Query: 192 VLIFDLGGGTFDVSILSIDEGALFEVRSTAGD-------THLGGEDFDNRLVSHLAEEFK 244
+ I DLG G+ D SI++ + + AGD LG ED LAEE K
Sbjct: 409 LAILDLGAGSTDASIINPKGDIIATHLAGAGDMVTMIIARELGLEDRY------LAEEIK 462
Query: 245 R----KCRSASDVGDHHGDAHFVVQSLLQNFF 272
+ K S + G F L F
Sbjct: 463 KYPLAKVESLFHLRHEDGSVQFFSTPLPPAVF 494
>3tqq_A Methionyl-tRNA formyltransferase; protein synthesis; 2.00A
{Coxiella burnetii}
Length = 314
Score = 31.7 bits (73), Expect = 0.53
Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 38/106 (35%)
Query: 290 GAA-VQAAILSGDQSSAIQ-----------DVLLVDVTPLSLGIETAGGVMTKL------ 331
GAA +Q AIL+GD+ + I DVL +S +TA + +L
Sbjct: 118 GAAPIQRAILAGDRETGISIMQMNEGLDTGDVLAKSACVISSE-DTAADLHDRLSLIGAD 176
Query: 332 --------IERNTRIPCKQTQTFTTYAD-----------NQPAVTI 358
+E+ KQ + TYA + AV I
Sbjct: 177 LLLESLAKLEKGDIKLEKQDEASATYASKIQKQEALIDWRKSAVEI 222
>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,,
transferase, structural genomics, PSI-2; 2.00A
{Bifidobacterium adolescentis ATCC15703}
Length = 515
Score = 30.4 bits (69), Expect = 1.7
Identities = 10/23 (43%), Positives = 13/23 (56%)
Query: 282 NPDEAVAYGAAVQAAILSGDQSS 304
DE VA GAA QAA + ++
Sbjct: 456 ATDEYVAIGAARQAAWVLSGETE 478
>1h7c_A Tubulin-specific chaperone A; protein folding, cofactor A; 1.8A
{Homo sapiens} SCOP: a.7.5.1
Length = 108
Score = 28.6 bits (64), Expect = 2.0
Identities = 19/95 (20%), Positives = 38/95 (40%), Gaps = 13/95 (13%)
Query: 427 RLSKEEIDRMINDAERYKDEDEKQKERIS---ARNNLEAYVFNVKQALDDAGNKLTESEK 483
RL KE Y+ E ++Q+E+I A + + + L ++ + + ++
Sbjct: 18 RLVKER--------VMYEKEAKQQEEKIEKMRAEDGENYDIKKQAEILQESRMMIPDCQR 69
Query: 484 SRCREECDATLKWLDNNT-LADKEEYQDKLQQLQK 517
R + L+N L + EEY++ L
Sbjct: 70 -RLEAAYLDLQRILENEKDLEEAEEYKEARLVLDS 103
>2efr_A General control protein GCN4 and tropomyosin 1 Al; destabilizing
cluster, hydrophobic core, contractIle protein; 1.80A
{Saccharomyces cerevisiae} PDB: 2efs_A 2d3e_A
Length = 155
Score = 29.2 bits (65), Expect = 2.1
Identities = 15/91 (16%), Positives = 40/91 (43%), Gaps = 5/91 (5%)
Query: 440 AERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKWLDN 499
K + + ++ + E + + L +A + +E+S + + ++ L++
Sbjct: 55 TNNLKSLEAQAEKYSQKEDKYEEEIKVLSDKLKEAETRAEFAERS--VTKLEKSIDDLED 112
Query: 500 NTLADKEEY---QDKLQQLQKSCMPLMSKMH 527
A K +Y ++++QL+ L+SK +
Sbjct: 113 ELYAQKLKYKAISEEMKQLEDKVEELLSKNY 143
>2trc_P Phosducin, MEKA, PP33; transducin, beta-gamma, signal transduction,
regulation, phosphorylation, G proteins, thioredoxin,
vision; 2.40A {Rattus norvegicus} SCOP: c.47.1.6
Length = 217
Score = 29.6 bits (66), Expect = 2.4
Identities = 14/91 (15%), Positives = 34/91 (37%), Gaps = 11/91 (12%)
Query: 437 INDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKW 496
IND ++K E E ++ + ++Q +S++ R+ +
Sbjct: 13 INDWRKFKLESEDGDSIPPSKKEI------LRQMSSPQSRDDKDSKERMSRKMSIQEYEL 66
Query: 497 LDNNTLADKEEYQDKLQQLQKSCMPLMSKMH 527
+ +E + L++ ++ CM M +
Sbjct: 67 IH-----QDKEDEGCLRKYRRQCMQDMHQKL 92
>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar
kinases, HSC70, superfamily; 1.90A {Escherichia coli}
SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*
Length = 513
Score = 30.0 bits (68), Expect = 2.6
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 15/88 (17%)
Query: 120 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT------KDAGAIAGLNVMRIVNEP 173
L+ E + + SV V T RQA K A + + I++
Sbjct: 68 CLSLFAERLQGFSPASVC-IVGT------HTLRQALNATDFLKRAEKVIPYPI-EIISGN 119
Query: 174 TAAALAY-GLDKNLKGERNVLIFDLGGG 200
A L + G++ + L+ D+GGG
Sbjct: 120 EEARLIFMGVEHTQPEKGRKLVIDIGGG 147
>3mxz_A Tubulin-specific chaperone A; helix bundle; 1.60A {Arabidopsis
thaliana}
Length = 116
Score = 28.4 bits (63), Expect = 2.9
Identities = 12/97 (12%), Positives = 29/97 (29%), Gaps = 15/97 (15%)
Query: 427 RLSKEEIDRMINDAERYKDEDEKQKERIS---ARNNLEAYVFNVKQALDDAGNKLTESEK 483
R+ KE Y+ E E++ + + + + + L ++ + + K
Sbjct: 19 RIVKEL--------HSYEKEVEREAAKTADMKDKGADPYDLKQQENVLGESRMMIPDCHK 70
Query: 484 SRCREECDATLKWLDNNT---LADKEEYQDKLQQLQK 517
R L + E +D + +
Sbjct: 71 -RLESALADLKSTLAELEETDEKEGPEIEDAKKTVAD 106
>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity,
intermolecular INTE chaperone, SHSP, human, small
heat-shock protein, cataract; NMR {Homo sapiens} PDB:
2ygd_A
Length = 175
Score = 28.8 bits (64), Expect = 3.0
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 386 PRGVPKIDVTFDLDANGILNVTA-KDTSSGKSQNITIK 422
P V + +T L ++G+L V + SG + I I
Sbjct: 125 PADVDPLTITSSLSSDGVLTVNGPRKQVSGPERTIPIT 162
>2y8d_A Erythrocyte membrane protein 1; DBL epsilon, pfemp1, malaria; 1.84A
{Plasmodium falciparum}
Length = 306
Score = 28.7 bits (64), Expect = 4.4
Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 7/52 (13%)
Query: 466 NVKQALDDAGNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQK 517
+ A + S+C C ++ K EY+ Q K
Sbjct: 200 KLNSECISAECTNGSVDNSKCTHACVNYKNYILTK----KTEYE---IQTNK 244
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A
resolution, N-formylmethionine, alpha subunit; HET: FME;
2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1
c.10.2.2 PDB: 1ltx_A*
Length = 567
Score = 28.6 bits (63), Expect = 5.7
Identities = 13/49 (26%), Positives = 23/49 (46%), Gaps = 3/49 (6%)
Query: 469 QALDDAGNKLTESEKSRCREECDATLKWLD--NNTLADKEEYQDKLQQL 515
Q L N+L +S + C L L+ N+L +E Q++L ++
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSC-PRLVLLNLQGNSLCQEEGIQERLAEM 558
>1qsd_A Protein (beta-tubulin binding post-chaperonin cofactor);
four-helix-bundle, chaperone; 2.20A {Saccharomyces
cerevisiae} SCOP: a.7.5.1
Length = 106
Score = 27.1 bits (60), Expect = 5.9
Identities = 16/101 (15%), Positives = 38/101 (37%), Gaps = 24/101 (23%)
Query: 427 RLSKEEIDRMINDAERYKDEDEKQKERIS---ARNNLEAYVFNVKQALDDAGNKLTESE- 482
RL+KEE Y+ E + Q+ ++ +++ Y +K+ L +++
Sbjct: 15 RLTKEE--------GYYQQELKDQEAHVAKLKEDKSVDPYD--LKKQE----EVLDDTKR 60
Query: 483 -----KSRCREECDATLKWLDNNT-LADKEEYQDKLQQLQK 517
+ RE + ++L D + + + Q+
Sbjct: 61 LLPTLYEKIREFKEDLEQFLKTYQGTEDVSDARSAITSAQE 101
>3jvp_A Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, sugar kinase,
crsytal structure, structural genomics, protein
structure initiative; HET: 5RP; 2.31A {Bacillus
halodurans} PDB: 3qdk_A*
Length = 572
Score = 28.5 bits (64), Expect = 6.2
Identities = 10/51 (19%), Positives = 19/51 (37%), Gaps = 12/51 (23%)
Query: 284 DEAVAYGAAVQAAILSGDQSSAIQDVLLVDVTPLSLGIETAGGVMTKLIER 334
+ A GAA+ A++ +G + IE A M ++ +
Sbjct: 474 KQTPALGAAMFASVAAGSEVGGYDS------------IEEAAKKMGRVKDE 512
>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase;
HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A
Length = 484
Score = 28.3 bits (64), Expect = 6.7
Identities = 10/31 (32%), Positives = 14/31 (45%)
Query: 274 GKSLNLSINPDEAVAYGAAVQAAILSGDQSS 304
G+ L+ D A GAA A I + + S
Sbjct: 411 GQQLDYRTGGDVGPALGAARLAQIAANPEKS 441
>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase;
1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB:
1t6d_A 2j4r_A*
Length = 315
Score = 27.9 bits (63), Expect = 8.5
Identities = 23/88 (26%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 120 VLTKMKETAEAYLGHSVRDAVITVPAYFNDAQRQAT------KDAGAIAGLNVMRIVNEP 173
VL + K+ + + V+ AV T +A R+A + GL V ++
Sbjct: 69 VLKEYKKLIDEFKVERVK-AVAT------EAIRRAKNAEEFLERVKREVGLVV-EVITPE 120
Query: 174 TAAALAY-GLDKNLKGERNVLIFDLGGG 200
AY + +LK E V + D GGG
Sbjct: 121 QEGRYAYLAVAYSLKPEGEVCVVDQGGG 148
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide
biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP:
b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Length = 329
Score = 27.9 bits (63), Expect = 8.6
Identities = 17/107 (15%), Positives = 29/107 (27%), Gaps = 39/107 (36%)
Query: 290 GAA-VQAAILSGDQSSAIQ-----------DVLLVDVTPLSLGIETAGGVMTK------- 330
GA+ + ++ GD+ D+LL + +T + +
Sbjct: 137 GASAINWTLIHGDKKGGFSIFWADDGLDTGDLLLQKECEVLPD-DTVSTLYNRFLFPEGI 195
Query: 331 --------LIERNTRIPCKQTQTFTTYAD-----------NQPAVTI 358
LI Q + TY +QPA I
Sbjct: 196 KGMVQAVRLIAEGKAPRLPQPEEGATYEGIQKKETAKINWDQPAEAI 242
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.315 0.132 0.374
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,280,300
Number of extensions: 518052
Number of successful extensions: 1431
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1365
Number of HSP's successfully gapped: 95
Length of query: 549
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 451
Effective length of database: 3,965,535
Effective search space: 1788456285
Effective search space used: 1788456285
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 60 (26.7 bits)