RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3431
(549 letters)
>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 185
Score = 275 bits (704), Expect = 4e-91
Identities = 152/183 (83%), Positives = 168/183 (91%)
Query: 2 PAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPR 61
PA+GIDLG+TYSCV VFQ GKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNP
Sbjct: 2 PAVGIDLGSTYSCVGVFQHGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPT 61
Query: 62 NTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVL 121
NTVFDAKRLIGR+FDD +Q DMKHWPF VVND +PK+QVE+KGE K+F PEE+SSMVL
Sbjct: 62 NTVFDAKRLIGRRFDDAVVQSDMKHWPFMVVNDAGRPKVQVEYKGETKSFYPEEVSSMVL 121
Query: 122 TKMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYG 181
TKMKE AEAYLG +V +AV+TVPAYFND+QRQATKDAG IAGLNV+RI+NEPTAAA+AYG
Sbjct: 122 TKMKEIAEAYLGKTVTNAVVTVPAYFNDSQRQATKDAGTIAGLNVLRIINEPTAAAIAYG 181
Query: 182 LDK 184
LDK
Sbjct: 182 LDK 184
>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 183
Score = 254 bits (650), Expect = 4e-83
Identities = 107/183 (58%), Positives = 130/183 (71%), Gaps = 4/183 (2%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFT-DTERLIGDAAKNQVAMNPRN 62
IGIDLGTT SCVA+ ++ N +G+RTTPS +A+T D E L+G AK Q NP+N
Sbjct: 3 IGIDLGTTNSCVAIMDGTTPRVLENAEGDRTTPSIIAYTQDGETLVGQPAKRQAVTNPQN 62
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
T+F KRLIGR+F D ++Q+D+ PF ++ VE KG + AP +IS+ VL
Sbjct: 63 TLFAIKRLIGRRFQDEEVQRDVSIMPFKIIAA-DNGDAWVEVKG--QKMAPPQISAEVLK 119
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
KMK+TAE YLG V +AVITVPAYFNDAQRQATKDAG IAGL V RI+NEPTAAALAYGL
Sbjct: 120 KMKKTAEDYLGEPVTEAVITVPAYFNDAQRQATKDAGRIAGLEVKRIINEPTAAALAYGL 179
Query: 183 DKN 185
DK
Sbjct: 180 DKG 182
>d1yuwa1 b.130.1.1 (A:385-543) DnaK {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 159
Score = 234 bits (599), Expect = 8e-76
Identities = 119/159 (74%), Positives = 143/159 (89%)
Query: 303 SSAIQDVLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFE 362
S +QD+LL+DVTPLSLGIETAGGVMT LI+RNT IP KQTQTFTTY+DNQP V IQV+E
Sbjct: 1 SENVQDLLLLDVTPLSLGIETAGGVMTVLIKRNTTIPTKQTQTFTTYSDNQPGVLIQVYE 60
Query: 363 GERAMTKDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIK 422
GERAMTKDNNLLG F+LTGIPPAPRGVP+I+VTFD+DANGILNV+A D S+GK ITI
Sbjct: 61 GERAMTKDNNLLGKFELTGIPPAPRGVPQIEVTFDIDANGILNVSAVDKSTGKENKITIT 120
Query: 423 NDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLE 461
NDKGRLSKE+I+RM+ +AE+YK EDEKQ++++S++N+LE
Sbjct: 121 NDKGRLSKEDIERMVQEAEKYKAEDEKQRDKVSSKNSLE 159
>d1dkza2 b.130.1.1 (A:389-506) DnaK {Escherichia coli [TaxId: 562]}
Length = 118
Score = 187 bits (475), Expect = 5e-58
Identities = 76/118 (64%), Positives = 91/118 (77%)
Query: 309 VLLVDVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMT 368
VLL+DVTPLSLGIET GGVMT LI +NT IP K +Q F+T DNQ AV+I V +GER
Sbjct: 1 VLLLDVTPLSLGIETMGGVMTTLIAKNTTIPTKHSQVFSTAEDNQSAVSIHVLQGERKRA 60
Query: 369 KDNNLLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 426
DN LG F+L GI PAPRG+P+I+VTFD+DA+GIL+V+AKD +SGK Q ITIK G
Sbjct: 61 ADNKSLGQFNLDGINPAPRGMPQIEVTFDIDADGILHVSAKDKNSGKEQKITIKASSG 118
>d1u00a2 b.130.1.1 (A:389-503) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 115
Score = 164 bits (415), Expect = 2e-49
Identities = 55/114 (48%), Positives = 74/114 (64%)
Query: 313 DVTPLSLGIETAGGVMTKLIERNTRIPCKQTQTFTTYADNQPAVTIQVFEGERAMTKDNN 372
DV PLSLG+ET GG++ K+I RNT IP + Q FTT+ D Q A++I V +GER + +D
Sbjct: 2 DVIPLSLGLETMGGLVEKVIPRNTTIPVARAQDFTTFKDGQTAMSIHVMQGERELVQDCR 61
Query: 373 LLGTFDLTGIPPAPRGVPKIDVTFDLDANGILNVTAKDTSSGKSQNITIKNDKG 426
L F L GIP P G I VTF +DA+G+L+VTA + S+G +I +K G
Sbjct: 62 SLARFALRGIPALPAGGAHIRVTFQVDADGLLSVTAMEKSTGVEASIQVKPSYG 115
>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 137
Score = 117 bits (293), Expect = 1e-31
Identities = 37/181 (20%), Positives = 62/181 (34%), Gaps = 45/181 (24%)
Query: 3 AIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQVAMNPRN 62
IGIDLGT + V + +G V + +T + +G AKN + P
Sbjct: 2 DIGIDLGTANTLVFLRGKGIVVNEPSVIAIDSTTGEI------LKVGLEAKNMIGKTPAT 55
Query: 63 TVFDAKRLIGRKFDDPKIQQDMKHWPFTVVNDRSKPKIQVEFKGERKTFAPEEISSMVLT 122
+ +D + ++ ++L
Sbjct: 56 IKAI------------RPMRDGVIADY-------------------------TVALVMLR 78
Query: 123 KMKETAEAYLGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPTAAALAYGL 182
A+ + VI VP D +R+A DAG AG + + ++ EP AAA+ G
Sbjct: 79 YFINKAKGGMNLFKPRVVIGVPIGITDVERRAILDAGLEAGASKVFLIEEPMAAAI--GS 136
Query: 183 D 183
+
Sbjct: 137 N 137
>d1ud0a_ a.8.4.1 (A:) DnaK {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 84
Score = 97.5 bits (243), Expect = 2e-25
Identities = 27/83 (32%), Positives = 52/83 (62%), Gaps = 2/83 (2%)
Query: 456 ARNNLEAYVFNVKQALDDA--GNKLTESEKSRCREECDATLKWLDNNTLADKEEYQDKLQ 513
+ LE+Y FN+K ++D K+ + +K + ++C+ + WLD N A+KEE++ + +
Sbjct: 2 GSHMLESYAFNMKATVEDEKLQGKINDEDKQKILDKCNEIISWLDKNQTAEKEEFEHQQK 61
Query: 514 QLQKSCMPLMSKMHGGAGGASAG 536
+L+K C P+++K++ AGG G
Sbjct: 62 ELEKVCNPIITKLYQSAGGMPGG 84
>d1dkza1 a.8.4.1 (A:507-603) DnaK {Escherichia coli [TaxId: 562]}
Length = 97
Score = 97.5 bits (243), Expect = 3e-25
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 3/96 (3%)
Query: 428 LSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCR 487
L+++EI +M+ DAE + D K +E + RN + + + ++ +++AG+KL +K+
Sbjct: 1 LNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIE 60
Query: 488 EECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLM 523
A L DK + K+Q+L + LM
Sbjct: 61 SALTALETALKGE---DKAAIEAKMQELAQVSQKLM 93
>d1dkgd2 c.55.1.1 (D:186-383) Heat shock protein 70kDa, ATPase
fragment {Escherichia coli, gene dnaK [TaxId: 562]}
Length = 198
Score = 91.9 bits (228), Expect = 4e-22
Identities = 37/62 (59%), Positives = 48/62 (77%), Gaps = 3/62 (4%)
Query: 188 GERNVLIFDLGGGTFDVSILSIDE---GALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFK 244
G R + ++DLGGGTFD+SI+ IDE FEV +T GDTHLGGEDFD+RL+++L EEFK
Sbjct: 1 GNRTIAVYDLGGGTFDISIIEIDEVDGEKTFEVLATNGDTHLGGEDFDSRLINYLVEEFK 60
Query: 245 RK 246
+
Sbjct: 61 KD 62
Score = 58.0 bits (140), Expect = 2e-10
Identities = 27/83 (32%), Positives = 34/83 (40%), Gaps = 14/83 (16%)
Query: 229 EDFDNRLVSHLAEEFKRKCRSA-SDVGDHHGDAHFV-----------VQSLLQNFFCGKS 276
++ LV L + A D G D V VQ + FF GK
Sbjct: 118 AKLES-LVEDLVNRSIELLKVALQDAGLSVSDIDDVILVGGQTRMPMVQKKVAEFF-GKE 175
Query: 277 LNLSINPDEAVAYGAAVQAAILS 299
+NPDEAVA GAAVQ +L+
Sbjct: 176 PRKDVNPDEAVAIGAAVQGGVLT 198
>d1bupa2 c.55.1.1 (A:189-381) Heat shock protein 70kDa, ATPase
fragment {Cow (Bos taurus) [TaxId: 9913]}
Length = 193
Score = 89.3 bits (221), Expect = 4e-21
Identities = 47/59 (79%), Positives = 54/59 (91%), Gaps = 1/59 (1%)
Query: 188 GERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRK 246
ERNVLIFDLGGGTFDVSIL+I++G +FEV+STAGDTHLGGEDFDNR+V+H EFKRK
Sbjct: 3 AERNVLIFDLGGGTFDVSILTIEDG-IFEVKSTAGDTHLGGEDFDNRMVNHFIAEFKRK 60
Score = 59.6 bits (144), Expect = 5e-11
Identities = 30/36 (83%), Positives = 32/36 (88%)
Query: 264 VQSLLQNFFCGKSLNLSINPDEAVAYGAAVQAAILS 299
+Q LLQ+FF GK LN SINPDEAVAYGAAVQAAILS
Sbjct: 158 IQKLLQDFFNGKELNKSINPDEAVAYGAAVQAAILS 193
>d1u00a1 a.8.4.1 (A:504-615) Chaperone protein hscA (Hsc66)
{Escherichia coli [TaxId: 562]}
Length = 112
Score = 85.0 bits (210), Expect = 1e-20
Identities = 18/120 (15%), Positives = 44/120 (36%), Gaps = 8/120 (6%)
Query: 428 LSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCR 487
L+ EI MI D+ Y ++D K + + + ++ AL L+ +E+
Sbjct: 1 LTDSEIASMIKDSMSYAEQDVKARMLAEQKVEAARVLESLHGALAADAALLSAAERQVID 60
Query: 488 EECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLMSKMHGGAGGASAGDMPRGGPTVEE 547
+ + + D + + ++ + K ++ + + G +V+E
Sbjct: 61 DAAAHLSEVAQGD---DVDAIEQAIKNVDKQTQDFAARRMDQSVRRAL-----KGHSVDE 112
>d2zgya2 c.55.1.1 (A:158-320) Plasmid segregation protein ParM
{Escherichia coli [TaxId: 562]}
Length = 163
Score = 61.4 bits (148), Expect = 8e-12
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 3/61 (4%)
Query: 184 KNLKGERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEF 243
+ L ++LI DLGG T D+S + G L + GD+ LG + + L+
Sbjct: 1 QELDELDSLLIIDLGGTTLDISQV---MGKLSGISKIYGDSSLGVSLVTSAVKDALSLAR 57
Query: 244 K 244
Sbjct: 58 T 58
>d2fsja1 c.55.1.12 (A:165-325) Hypothetical protein Ta0583 {Archaeon
Thermoplasma acidophilum [TaxId: 2303]}
Length = 161
Score = 56.7 bits (136), Expect = 4e-10
Identities = 11/64 (17%), Positives = 23/64 (35%), Gaps = 2/64 (3%)
Query: 189 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKCR 248
++ D+G T DV +++ + V + +G D + L +A+E
Sbjct: 5 PGYGVVIDVGSRTTDVLTINL--MDMEPVVELSFSLQIGVGDAISALSRKIAKETGFVVP 62
Query: 249 SASD 252
Sbjct: 63 FDLA 66
>d1jcea2 c.55.1.1 (A:141-336) Prokaryotic actin homolog MreB
{Thermotoga maritima [TaxId: 2336]}
Length = 196
Score = 49.1 bits (116), Expect = 2e-07
Identities = 11/50 (22%), Positives = 24/50 (48%), Gaps = 6/50 (12%)
Query: 189 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSH 238
++ D+GGGT +V+++S+ T + G++ D +V +
Sbjct: 6 PSGNMVVDIGGGTTEVAVISLGSIV------TWESIRIAGDEMDEAIVQY 49
Score = 39.5 bits (91), Expect = 4e-04
Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 8/101 (7%)
Query: 202 FDVSILSIDEGALFEVRSTAGDTHLGGEDFDNRLVSHLAEEFKRKCRS-ASDVGDHH--- 257
VS + + G ++ G+ +V + ++ SD+ +
Sbjct: 84 TTVSGIDLSTGLPRKLTLKGGEVREALRSVVVAIVESVRTTLEKTPPELVSDIIERGIFL 143
Query: 258 ---GDAHFVVQSLLQNFFCGKSLNLSINPDEAVAYGAAVQA 295
G + +LLQ G S+ S P AVA GA +
Sbjct: 144 TGGGSLLRGLDTLLQKET-GISVIRSEEPLTAVAKGAGMVL 183
>d2trcp_ c.47.1.6 (P:) Phosducin {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 217
Score = 33.1 bits (75), Expect = 0.055
Identities = 14/89 (15%), Positives = 34/89 (38%), Gaps = 11/89 (12%)
Query: 437 INDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCREECDATLKW 496
IND ++K E E ++ + ++Q +S++ R+ +
Sbjct: 13 INDWRKFKLESEDGDSIPPSKKEI------LRQMSSPQSRDDKDSKERMSRKMSIQEYE- 65
Query: 497 LDNNTLADKEEYQDKLQQLQKSCMPLMSK 525
+ +E + L++ ++ CM M +
Sbjct: 66 ----LIHQDKEDEGCLRKYRRQCMQDMHQ 90
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 33.1 bits (75), Expect = 0.068
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Query: 407 TAKDTSSGKSQNI---TIKNDKG--RLSKEEIDRMINDAERYKDEDEKQKE 452
+ +NI ++ D+ L+ EEI++ + + E+ K+E+EK+K+
Sbjct: 193 ALLEVVQSGGKNIELAVMRRDQSLKILNPEEIEKYVAEIEKEKEENEKKKQ 243
>d1zbdb_ g.50.1.1 (B:) Effector domain of rabphilin-3a {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 124
Score = 29.7 bits (66), Expect = 0.37
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 11/72 (15%)
Query: 428 LSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTESEKSRCR 487
L+ EE + + R + + ++ERI + L+ + +RC
Sbjct: 3 LTDEEKEIINRVIARAEKMETMEQERIG----------RLVDRLETMRKNVAGDGVNRCI 52
Query: 488 EECDATLKWLDN 499
C L L +
Sbjct: 53 -LCGEQLGMLGS 63
>d1e4ft2 c.55.1.1 (T:200-390) Cell division protein FtsA {Thermotoga
maritima [TaxId: 2336]}
Length = 191
Score = 29.9 bits (66), Expect = 0.54
Identities = 8/71 (11%), Positives = 18/71 (25%), Gaps = 4/71 (5%)
Query: 189 ERNVLIFDLGGGTFDVSILSIDEGALFEVRSTAGDTHLGGEDFDN--RLVSHLAEEFKRK 246
+R V++ +LG + G ++ +D +E
Sbjct: 6 DRGVVVVNLGYNFTGLIAYK--NGVPIKISYVPVGMKHVIKDVSAVLDTSFEESERLIIT 63
Query: 247 CRSASDVGDHH 257
+A
Sbjct: 64 HGNAVYNDLKE 74
>d1qsda_ a.7.5.1 (A:) Tubulin chaperone cofactor A {Baker's yeast
(Saccharomyces cerevisiae), Rbl2p [TaxId: 4932]}
Length = 102
Score = 28.9 bits (65), Expect = 0.55
Identities = 14/88 (15%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 435 RMINDAERYKDEDEKQKERI-SARNNLEAYVFNVKQA---LDDAGNKLTESEKSRCREEC 490
R+ + Y+ E + Q+ + + + +++K+ LDD L + + RE
Sbjct: 12 RLTKEEGYYQQELKDQEAHVAKLKEDKSVDPYDLKKQEEVLDDTKRLLPTLYE-KIREFK 70
Query: 491 DATLKWL-DNNTLADKEEYQDKLQQLQK 517
+ ++L D + + + Q+
Sbjct: 71 EDLEQFLKTYQGTEDVSDARSAITSAQE 98
>d2d0oa3 c.55.1.6 (A:404-606) Diol dehydratase-reactivating factor
large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}
Length = 203
Score = 29.8 bits (67), Expect = 0.69
Identities = 20/59 (33%), Positives = 27/59 (45%), Gaps = 13/59 (22%)
Query: 194 IFDLGGGTFDVSILSIDEGALFEVRSTAGD-------THLGGEDFDNRLVSHLAEEFKR 245
I DLG G+ D SI++ + + AGD LG ED +LAEE K+
Sbjct: 8 ILDLGAGSTDASIINPKGDIIATHLAGAGDMVTMIIARELGLEDR------YLAEEIKK 60
>d1nbwa3 c.55.1.6 (A:406-607) ATPase domain of the glycerol
dehydratase reactivase alpha subunit {Klebsiella
pneumoniae [TaxId: 573]}
Length = 202
Score = 29.0 bits (65), Expect = 1.1
Identities = 18/63 (28%), Positives = 28/63 (44%), Gaps = 21/63 (33%)
Query: 194 IFDLGGGTFDVSILSIDEGALFEVRST----AGD-------THLGGEDFDNRLVSHLAEE 242
I DLG G+ D +I++ + ++ + AG+ T LG ED LAE
Sbjct: 8 ILDLGAGSTDAAIVNAEG----QITAVHLAGAGNMVSLLIKTELGLEDL------SLAEA 57
Query: 243 FKR 245
K+
Sbjct: 58 IKK 60
>d1tdja1 c.79.1.1 (A:5-335) Threonine deaminase {Escherichia coli
[TaxId: 562]}
Length = 331
Score = 28.3 bits (62), Expect = 2.1
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 7/46 (15%)
Query: 167 MRIVNEPT-----AAALAYGLDKNLKGERNVLIFDLGGGTFDVSIL 207
+R V EP+ A Y N++GER I L G + L
Sbjct: 277 VRAVAEPSGALALAGMKKYIALHNIRGERLAHI--LSGANVNFHGL 320
>d1ve5a1 c.79.1.1 (A:2-311) Threonine deaminase {Thermus
thermophilus [TaxId: 274]}
Length = 310
Score = 28.4 bits (62), Expect = 2.2
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 10/75 (13%)
Query: 132 LGHSVRDAVITVPAYFNDAQRQATKDAGAIAGLNVMRIVNEPT-AAALAYGLDKNLKGER 190
+ D ++TV +A +A + + V EPT A LA L+ + +
Sbjct: 244 ILRERVDGILTVS---EEALLEAERLL-----FTRTKQVVEPTGALPLAAVLEHGARLPQ 295
Query: 191 NVLIFDLGGGTFDVS 205
+ + L GG D S
Sbjct: 296 TLALL-LSGGNRDFS 309
>d1rk8b_ d.232.1.1 (B:) Mago nashi protein {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 141
Score = 27.3 bits (61), Expect = 2.4
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 6/69 (8%)
Query: 396 FDLDANGILNVTAKDTSSGKSQNITIKNDK-GRLSKEEIDRMINDAERYKDEDEK--QKE 452
F+ +G L + S+ K+ + K + EE+ R+I D+E +++D +
Sbjct: 22 FEFRPDGKLR--YANNSNYKNDTMIRKEAFVHQSVMEELKRIIIDSEIMQEDDLPWPPPD 79
Query: 453 RISARNNLE 461
R+ R LE
Sbjct: 80 RVG-RQELE 87
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 322
Score = 27.9 bits (62), Expect = 3.0
Identities = 8/19 (42%), Positives = 9/19 (47%)
Query: 70 LIGRKFDDPKIQQDMKHWP 88
+ RKF PK D K P
Sbjct: 107 KLLRKFRKPKTFGDYKVIP 125
>d1duvg1 c.78.1.1 (G:1-150) Ornithine transcarbamoylase {Escherichia
coli [TaxId: 562]}
Length = 150
Score = 27.5 bits (60), Expect = 3.0
Identities = 5/31 (16%), Positives = 13/31 (41%)
Query: 428 LSKEEIDRMINDAERYKDEDEKQKERISARN 458
+ E++ ++ A + K + + KE
Sbjct: 14 FTPAELNSLLQLAAKLKADKKSGKEEAKLTG 44
>d1woqa1 c.55.1.10 (A:11-139) Inorganic
polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter
sp. KM [TaxId: 184230]}
Length = 129
Score = 27.2 bits (59), Expect = 3.2
Identities = 15/112 (13%), Positives = 29/112 (25%), Gaps = 18/112 (16%)
Query: 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTT--PSYVAFTDTERLIGDAAKNQ--- 55
P IGID+G T + K +++ T + + + L+ +
Sbjct: 2 APLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQPATPESVAEAVALVVAELSARPEA 61
Query: 56 -------------VAMNPRNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVND 94
+ + D + P V+ND
Sbjct: 62 PAAGSPVGVTFPGIIQHGVVHSAANVDKSWLNTDIDALLTARLGRPVEVIND 113
>d1flca2 c.23.10.2 (A:1-150,A:307-427) Esterase domain of
haemagglutinin-esterase-fusion glycoprotein HEF1
{Influenza C virus [TaxId: 11552]}
Length = 271
Score = 27.6 bits (61), Expect = 3.4
Identities = 12/51 (23%), Positives = 18/51 (35%), Gaps = 9/51 (17%)
Query: 255 DHHGDAHF--VVQSLLQNFFC----GKSLNLSINPDEAV---AYGAAVQAA 296
DHHGD ++ L C G S ++ + +G AA
Sbjct: 197 DHHGDQEMRELLSGLDYEARCISQSGWVNETSPFTEKYLLPPKFGRCPLAA 247
>d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein NikA
{Escherichia coli [TaxId: 562]}
Length = 499
Score = 27.8 bits (60), Expect = 3.4
Identities = 10/55 (18%), Positives = 19/55 (34%), Gaps = 6/55 (10%)
Query: 397 DLDANGILNVTAKDTSSGKSQNITIKNDKGRLSKEEIDRMINDAERYKDEDEKQK 451
D + L+ + + +G K ID+ I + DE ++Q
Sbjct: 399 PYDPHAFLSSMRVPSHADFQAQ------QGLADKPLIDKEIGEVLATHDETQRQA 447
>d1dxha1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 150
Score = 27.1 bits (59), Expect = 3.5
Identities = 6/38 (15%), Positives = 14/38 (36%)
Query: 428 LSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVF 465
S E+ +++ + K E+ + A +F
Sbjct: 15 HSTRELRYLLDLSRDLKRAKYTGTEQQHLKRKNIALIF 52
>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A
{Acidaminococcus fermentans [TaxId: 905]}
Length = 259
Score = 27.5 bits (60), Expect = 3.6
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
Query: 1 MPAIGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKN 54
+ +GID+G+T S + + GK EI+A + R I + +N
Sbjct: 2 IYTLGIDVGSTASKCIILKDGK-EIVA----KSLVAVGTGTSGPARSISEVLEN 50
>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX
{Salmonella typhimurium [TaxId: 90371]}
Length = 117
Score = 26.4 bits (57), Expect = 4.2
Identities = 16/104 (15%), Positives = 28/104 (26%), Gaps = 14/104 (13%)
Query: 4 IGIDLGTTYSCVAVFQQGKVEIIANDQGNRTTPSYVAFTDTERLIGDAAKNQ-------- 55
G D+G T + VF + + + SY AF D + + A +
Sbjct: 3 YGFDIGGTKIALGVFDSTR-RLQWEKRVPTPHTSYSAFLDAVCELVEEADQRFGVKGSVG 61
Query: 56 -----VAMNPRNTVFDAKRLIGRKFDDPKIQQDMKHWPFTVVND 94
+ T++ A + ND
Sbjct: 62 IGIPGMPETEDGTLYAANVPAASGKPLRADLSARLDRDVRLDND 105
>d1ml4a1 c.78.1.1 (A:2-151) Aspartate carbamoyltransferase catalytic
subunit {Archaeon Pyrococcus abyssi [TaxId: 29292]}
Length = 150
Score = 26.7 bits (58), Expect = 4.8
Identities = 8/25 (32%), Positives = 17/25 (68%)
Query: 428 LSKEEIDRMINDAERYKDEDEKQKE 452
SKE+I+ ++ AER + E +++ +
Sbjct: 13 FSKEDIETVLATAERLERELKEKGQ 37
>d1pvva1 c.78.1.1 (A:1-150) Ornithine transcarbamoylase {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 150
Score = 26.5 bits (58), Expect = 5.3
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 428 LSKEEIDRMINDAERYKDEDEKQKE 452
+ EEI ++ A+ +K + K
Sbjct: 15 YTAEEIWTILETAKMFKIWQKIGKP 39
>d1ekxa1 c.78.1.1 (A:1-150) Aspartate carbamoyltransferase catalytic
subunit {Escherichia coli [TaxId: 562]}
Length = 150
Score = 26.6 bits (58), Expect = 5.7
Identities = 4/23 (17%), Positives = 14/23 (60%)
Query: 428 LSKEEIDRMINDAERYKDEDEKQ 450
LS+++++ ++ A + K + +
Sbjct: 15 LSRDDLNLVLATAAKLKANPQPE 37
>d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal
domain {Haemophilus influenzae [TaxId: 727]}
Length = 278
Score = 26.8 bits (59), Expect = 6.8
Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 7/57 (12%)
Query: 30 QGNRTTPSYVAFTDTERLIGDAAK-----NQVAMNPRNTVFDAKRLIGRKFDDPKIQ 81
+ R P+ + F D L+ A+K N+ N R T DA + R F++ I
Sbjct: 59 KPERILPTTMEFVDIAGLVAGASKGEGLGNKFLANIRET--DAIGHVVRCFENDDIV 113
>d1jfja_ a.39.1.5 (A:) EHCABP {Entamoeba (Entamoeba histolytica)
[TaxId: 5759]}
Length = 134
Score = 26.2 bits (56), Expect = 6.9
Identities = 15/102 (14%), Positives = 32/102 (31%)
Query: 422 KNDKGRLSKEEIDRMINDAERYKDEDEKQKERISARNNLEAYVFNVKQALDDAGNKLTES 481
N G +S EE+ ++ K+E Q S + + + A + +
Sbjct: 11 VNGDGAVSYEEVKAFVSKKRAIKNEQLLQLIFKSIDADGNGEIDQNEFAKFYGSIQGQDL 70
Query: 482 EKSRCREECDATLKWLDNNTLADKEEYQDKLQQLQKSCMPLM 523
+ + L +D + KEE ++ +
Sbjct: 71 SDDKIGLKVLYKLMDVDGDGKLTKEEVTSFFKKHGIEKVAEQ 112
>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus subtilis
[TaxId: 1423]}
Length = 112
Score = 25.5 bits (56), Expect = 7.7
Identities = 8/28 (28%), Positives = 13/28 (46%)
Query: 425 KGRLSKEEIDRMINDAERYKDEDEKQKE 452
LSKEE + ++ + +E QK
Sbjct: 34 DKGLSKEEGEAVMRICDELSEELATQKA 61
>d1vlva1 c.78.1.1 (A:1-152) Ornithine transcarbamoylase {Thermotoga
maritima [TaxId: 2336]}
Length = 152
Score = 25.9 bits (56), Expect = 8.6
Identities = 6/24 (25%), Positives = 14/24 (58%)
Query: 428 LSKEEIDRMINDAERYKDEDEKQK 451
S EEI +++ +++ K E+ +
Sbjct: 16 FSPEEIRYLLDISKQVKMENRSKL 39
>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus
casseliflavus [TaxId: 37734]}
Length = 252
Score = 26.3 bits (57), Expect = 9.8
Identities = 9/21 (42%), Positives = 12/21 (57%), Gaps = 1/21 (4%)
Query: 4 IGIDLGTTYSCVAVF-QQGKV 23
+ ID GTT S +F + GK
Sbjct: 4 MAIDQGTTSSRAIIFDRNGKK 24
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.132 0.374
Gapped
Lambda K H
0.267 0.0461 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,934,630
Number of extensions: 90374
Number of successful extensions: 302
Number of sequences better than 10.0: 1
Number of HSP's gapped: 293
Number of HSP's successfully gapped: 47
Length of query: 549
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 459
Effective length of database: 1,171,896
Effective search space: 537900264
Effective search space used: 537900264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.6 bits)