BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3432
(695 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 631 bits (1627), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/436 (70%), Positives = 347/436 (79%), Gaps = 55/436 (12%)
Query: 31 EHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEE 90
EHYIPRAVLLDLEPRVIH+I+NSPYAKL
Sbjct: 58 EHYIPRAVLLDLEPRVIHSILNSPYAKL-------------------------------- 85
Query: 91 IFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADG 150
YNPEN+YLS+ GGGAGNNWASG+SQG+K+ E+IFDIIDREADG
Sbjct: 86 -----------------YNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADG 128
Query: 151 SDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNS 210
SDSLEGFVLCHSIAGGTGSG+GSYLLE L DR+PKK++QTYSVFPNQDE+SDVVVQPYNS
Sbjct: 129 SDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNS 188
Query: 211 LLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSY 270
LLTLKRLT NADC+VVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+ ST+TLRYP Y
Sbjct: 189 LLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGY 248
Query: 271 MNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTA 330
MNNDLIGLIA LIPTPRLHFLMTGYTPLT + VAS+RKTTVLDVMRRLLQPKN+MVST
Sbjct: 249 MNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTG 308
Query: 331 PDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVP 390
DR + HCY++ILNIIQGEVDP QVHKSLQRIRERKL NFIPW PA IQVALS+KSPY+P
Sbjct: 309 RDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLP 368
Query: 391 TSHRVSGLMLANHTNISSGISW------QLPKREAFLEQFRKEEMFLESLDELDDSRREV 444
++HRVSGLM+ANHT+ISS +L KREAFLEQFRKE+MF ++ DE+D SR V
Sbjct: 369 SAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIV 428
Query: 445 DELVQEYCAATRPDYL 460
+L+ EY AATRPDY+
Sbjct: 429 QQLIDEYHAATRPDYI 444
Score = 317 bits (811), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 159/256 (62%), Positives = 188/256 (73%), Gaps = 31/256 (12%)
Query: 440 SRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVA 499
S ++++LV +A+ YP YMNNDLIGLIA LIPTPRLHFLMTGYTPLT + VA
Sbjct: 224 SFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVA 283
Query: 500 SIRKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSI 559
S+RKT TVLDVMRRLLQPKN+MVST DR + HCY++I
Sbjct: 284 SVRKT-----------------------TVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAI 320
Query: 560 LNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLAN 619
LNIIQGEVDP QVHKSLQRIRERKL NFIPW PA IQVALS+KSPY+P++HRVSGLM+AN
Sbjct: 321 LNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMAN 380
Query: 620 HTNISSLFDRCLTG-----KREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATR 674
HT+ISSLF+R KREAFLEQFRKE+MF ++ DE+D SR V +L+ EY AATR
Sbjct: 381 HTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATR 440
Query: 675 PDYLSWGGAKSEEIID 690
PDY+SWG ++E +D
Sbjct: 441 PDYISWG---TQEQVD 453
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 630 bits (1626), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 309/436 (70%), Positives = 347/436 (79%), Gaps = 55/436 (12%)
Query: 31 EHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEE 90
EHYIPRAVLLDLEPRVIH+I+NSPYAKL
Sbjct: 58 EHYIPRAVLLDLEPRVIHSILNSPYAKL-------------------------------- 85
Query: 91 IFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADG 150
YNPEN+YLS+ GGGAGNNWASG+SQG+K+ E+IFDIIDREADG
Sbjct: 86 -----------------YNPENIYLSEHGGGAGNNWASGFSQGEKIHEDIFDIIDREADG 128
Query: 151 SDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNS 210
SDSLEGFVLCHSIAGGTGSG+GSYLLE L DR+PKK++QTYSVFPNQDE+SDVVVQPYNS
Sbjct: 129 SDSLEGFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQPYNS 188
Query: 211 LLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSY 270
LLTLKRLT NADC+VVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+ ST+TLRYP Y
Sbjct: 189 LLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRYPGY 248
Query: 271 MNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTA 330
MNNDLIGLIA LIPTPRLHFLMTGYTPLT + VAS+RKTTVLDVMRRLLQPKN+MVST
Sbjct: 249 MNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMVSTG 308
Query: 331 PDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVP 390
DR + HCY++ILNIIQGEVDP QVHKSLQRIRERKL NFIPW PA IQVALS+KSPY+P
Sbjct: 309 RDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLP 368
Query: 391 TSHRVSGLMLANHTNISSGISW------QLPKREAFLEQFRKEEMFLESLDELDDSRREV 444
++HRVSGLM+ANHT+ISS +L KREAFLEQFRKE+MF ++ DE+D SR V
Sbjct: 369 SAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIV 428
Query: 445 DELVQEYCAATRPDYL 460
+L+ EY AATRPDY+
Sbjct: 429 QQLIDEYHAATRPDYI 444
Score = 317 bits (811), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 157/247 (63%), Positives = 183/247 (74%), Gaps = 28/247 (11%)
Query: 440 SRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVA 499
S ++++LV +A+ YP YMNNDLIGLIA LIPTPRLHFLMTGYTPLT + VA
Sbjct: 224 SFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVA 283
Query: 500 SIRKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSI 559
S+RKT TVLDVMRRLLQPKN+MVST DR + HCY++I
Sbjct: 284 SVRKT-----------------------TVLDVMRRLLQPKNVMVSTGRDRQTNHCYIAI 320
Query: 560 LNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLAN 619
LNIIQGEVDP QVHKSLQRIRERKL NFIPW PA IQVALS+KSPY+P++HRVSGLM+AN
Sbjct: 321 LNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMAN 380
Query: 620 HTNISSLFDRCLTG-----KREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATR 674
HT+ISSLF+R KREAFLEQFRKE+MF ++ DE+D SR V +L+ EY AATR
Sbjct: 381 HTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATR 440
Query: 675 PDYLSWG 681
PDY+SWG
Sbjct: 441 PDYISWG 447
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 189 bits (480), Expect = 5e-48, Method: Compositional matrix adjust.
Identities = 125/354 (35%), Positives = 199/354 (56%), Gaps = 24/354 (6%)
Query: 107 LYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAG 165
L+ P+N + AGN WA G Y++G +L + + D+I REA+G DSL+GF + HS+ G
Sbjct: 84 LFRPDNYIFGQ--SSAGNVWAKGHYTEGAELVDSVMDVIRREAEGCDSLQGFQITHSLGG 141
Query: 166 GTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVV 225
GTGSGMG+ L+ + + FP +++ T+SV P+ SD V+PYN+ L++ +L ++D
Sbjct: 142 GTGSGMGTLLISKIREEFPDRMMATFSVLPSPKR-SDTRVEPYNATLSVHQLVEHSDETF 200
Query: 226 VLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPT 285
+DN AL I L + PS+ +N+LVS++M+ T++LRYP +N+DL L L+P
Sbjct: 201 CIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPF 260
Query: 286 PRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNI 345
PRLHF M GY PLTA S R TV ++ +++ KNMM + P Y+++
Sbjct: 261 PRLHFFMVGYAPLTAIGS-QSFRSLTVPELTQQMFDAKNMMAAADPRNGR---YLTVAAF 316
Query: 346 IQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTN 405
+G+V +V + +++ + F+ W P +Q A+ P ++ +AN T+
Sbjct: 317 FRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCS---VAPQGLDMAATFIANSTS 373
Query: 406 ISS-----GISWQ-LPKREAFLEQFRKEEMFLESLDELDDSRRE--VDELVQEY 451
I G + + KR+AFL + E M DEL+ S E +++LV EY
Sbjct: 374 IQELFKRVGDQFSAMFKRKAFLHWYTSEGM-----DELEFSEAESNMNDLVSEY 422
Score = 89.7 bits (221), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/237 (28%), Positives = 105/237 (44%), Gaps = 42/237 (17%)
Query: 440 SRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVA 499
S +++ LV + YP +N+DL L L+P PRLHF M GY PLTA
Sbjct: 221 SYGDLNNLVSSVMSGVTTSLRYPGQLNSDLRKLAVNLVPFPRLHFFMVGYAPLTAIGS-Q 279
Query: 500 SIRKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSI 559
S R TV ++ +++ KNMM A+ P+N Y+++
Sbjct: 280 SFRSLTVPELTQQMFDAKNMMAAA--------------DPRNGR------------YLTV 313
Query: 560 LNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLAN 619
+G+V +V + +++ + F+ W P +Q A+ P ++ +AN
Sbjct: 314 AAFFRGKVSVKEVEDEMHKVQSKNSDYFVEWIPNNVQTAVCS---VAPQGLDMAATFIAN 370
Query: 620 HTNISSLFDRC-----LTGKREAFLEQFRKEEMFLESLDELDDSRRE--VDELVQEY 669
T+I LF R KR+AFL + E M DEL+ S E +++LV EY
Sbjct: 371 STSIQELFKRVGDQFSAMFKRKAFLHWYTSEGM-----DELEFSEAESNMNDLVSEY 422
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 128/429 (29%), Positives = 215/429 (50%), Gaps = 75/429 (17%)
Query: 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 92
Y+PRA+L+DLEP + ++ + P+
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFG------------------------------------ 82
Query: 93 DIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGS 151
+++ P+N + GAGNNWA G Y++G +L + + D++ +E++
Sbjct: 83 -------------QIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 127
Query: 152 DSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSL 211
D L+GF L HS+ GGTGSGMG+ L+ + + +P +I+ T+SV P+ ++SD VV+PYN+
Sbjct: 128 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDTVVEPYNAT 186
Query: 212 LTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYM 271
L++ +L N D +DN AL I L + P++ +N LVS M+ T+ LR+P +
Sbjct: 187 LSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 272 NNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAP 331
N DL L ++P PRLHF M G+ PLT+ R TV ++ +++ KNMM + P
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSKNMMAACDP 305
Query: 332 DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT 391
Y+++ I +G + +V + + I+ + F+ W P ++ A+ P
Sbjct: 306 RHGR---YLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTAVCDIP---PR 359
Query: 392 SHRVSGLMLANHTNISSGISWQLPKR--EAFLEQFRKEEMFL-----ESLDELDDSRRE- 443
++S + N T I +L KR E F FR+ + FL E +DE++ + E
Sbjct: 360 GLKMSSTFIGNSTAIQ-----ELFKRISEQFTAMFRR-KAFLHWYTGEGMDEMEFTEAES 413
Query: 444 -VDELVQEY 451
+++LV EY
Sbjct: 414 NMNDLVSEY 422
Score = 72.8 bits (177), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 55/216 (25%), Positives = 93/216 (43%), Gaps = 42/216 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N DL L ++P PRLHF M G+ PLT+
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS----------------------- 278
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
R TV ++ +++ KNMM + P Y+++ I +G + +V + + I+
Sbjct: 279 -QQYRALTVPELTQQMFDSKNMMAACDPRHGR---YLTVATIFRGRMSMKEVDEQMLNIQ 334
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTGKREAFLE 640
+ F+ W P ++ A+ P ++S + N T I LF R E F
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIP---PRGLKMSSTFIGNSTAIQELFKRI----SEQFTA 387
Query: 641 QFRKEEMFL-----ESLDELDDSRRE--VDELVQEY 669
FR+ + FL E +DE++ + E +++LV EY
Sbjct: 388 MFRR-KAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 183 bits (464), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 127/429 (29%), Positives = 215/429 (50%), Gaps = 75/429 (17%)
Query: 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 92
Y+PRA+L+DLEP + ++ + P+
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFG------------------------------------ 82
Query: 93 DIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGS 151
+++ P+N + GAGNNWA G Y++G +L + + D++ +E++
Sbjct: 83 -------------QIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 127
Query: 152 DSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSL 211
D L+GF L HS+ GGTGSGMG+ L+ + + +P +I+ T+SV P+ ++SD VV+PYN+
Sbjct: 128 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDTVVEPYNAT 186
Query: 212 LTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYM 271
L++ +L N D +DN AL I L + P++ +N LVS M+ T+ LR+P +
Sbjct: 187 LSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 272 NNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAP 331
N DL L ++P PRLHF M G+ PLT+ R TV ++ +++ KNMM + P
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSKNMMAACDP 305
Query: 332 DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT 391
Y+++ I +G + +V + + ++ + F+ W P ++ A+ P
Sbjct: 306 RHGR---YLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP---PR 359
Query: 392 SHRVSGLMLANHTNISSGISWQLPKR--EAFLEQFRKEEMFL-----ESLDELDDSRRE- 443
++S + N T I +L KR E F FR+ + FL E +DE++ + E
Sbjct: 360 GLKMSATFIGNSTAIQ-----ELFKRISEQFTAMFRR-KAFLHWYTGEGMDEMEFTEAES 413
Query: 444 -VDELVQEY 451
+++LV EY
Sbjct: 414 NMNDLVSEY 422
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 42/216 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N DL L ++P PRLHF M G+ PLT+
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS----------------------- 278
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
R TV ++ +++ KNMM + P Y+++ I +G + +V + + ++
Sbjct: 279 -QQYRALTVPELTQQMFDSKNMMAACDPRHGR---YLTVAAIFRGRMSMKEVDEQMLNVQ 334
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTGKREAFLE 640
+ F+ W P ++ A+ P ++S + N T I LF R E F
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIP---PRGLKMSATFIGNSTAIQELFKRI----SEQFTA 387
Query: 641 QFRKEEMFL-----ESLDELDDSRRE--VDELVQEY 669
FR+ + FL E +DE++ + E +++LV EY
Sbjct: 388 MFRR-KAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 127/429 (29%), Positives = 215/429 (50%), Gaps = 75/429 (17%)
Query: 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 92
Y+PRA+L+DLEP + ++ + P+
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFG------------------------------------ 82
Query: 93 DIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGS 151
+++ P+N + GAGNNWA G Y++G +L + + D++ +E++
Sbjct: 83 -------------QIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 127
Query: 152 DSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSL 211
D L+GF L HS+ GGTGSGMG+ L+ + + +P +I+ T+SV P+ ++SD VV+PYN+
Sbjct: 128 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDTVVEPYNAT 186
Query: 212 LTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYM 271
L++ +L N D +DN AL I L + P++ +N LVS M+ T+ LR+P +
Sbjct: 187 LSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 272 NNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAP 331
N DL L ++P PRLHF M G+ PLT+ R TV ++ +++ KNMM + P
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSKNMMAACDP 305
Query: 332 DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT 391
Y+++ I +G + +V + + ++ + F+ W P ++ A+ P
Sbjct: 306 RHGR---YLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP---PR 359
Query: 392 SHRVSGLMLANHTNISSGISWQLPKR--EAFLEQFRKEEMFL-----ESLDELDDSRRE- 443
++S + N T I +L KR E F FR+ + FL E +DE++ + E
Sbjct: 360 GLKMSATFIGNSTAIQ-----ELFKRISEQFTAMFRR-KAFLHWYTGEGMDEMEFTEAES 413
Query: 444 -VDELVQEY 451
+++LV EY
Sbjct: 414 NMNDLVSEY 422
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 42/216 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N DL L ++P PRLHF M G+ PLT+
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS----------------------- 278
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
R TV ++ +++ KNMM + P Y+++ I +G + +V + + ++
Sbjct: 279 -QQYRALTVPELTQQMFDSKNMMAACDPRHGR---YLTVAAIFRGRMSMKEVDEQMLNVQ 334
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTGKREAFLE 640
+ F+ W P ++ A+ P ++S + N T I LF R E F
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIP---PRGLKMSATFIGNSTAIQELFKRI----SEQFTA 387
Query: 641 QFRKEEMFL-----ESLDELDDSRRE--VDELVQEY 669
FR+ + FL E +DE++ + E +++LV EY
Sbjct: 388 MFRR-KAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 215/429 (50%), Gaps = 75/429 (17%)
Query: 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 92
Y+PRA+L+DLEP + ++ + P+
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFG------------------------------------ 82
Query: 93 DIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGS 151
+++ P+N + GAGNNWA G Y++G +L + + D++ +E++
Sbjct: 83 -------------QIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 127
Query: 152 DSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSL 211
D L+GF L HS+ GGTGSGMG+ L+ + + +P +I+ T+SV P+ ++SD VV+PYN+
Sbjct: 128 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDTVVEPYNAT 186
Query: 212 LTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYM 271
L++ +L N D +DN AL I L + P++ +N LVS M+ T+ LR+P +
Sbjct: 187 LSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 272 NNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAP 331
N DL L ++P PRLHF M G+ PLT+ R TV ++ +++ KNMM + P
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAKNMMAACDP 305
Query: 332 DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT 391
Y+++ + +G + +V + + ++ + F+ W P ++ A+ P
Sbjct: 306 RHGR---YLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP---PR 359
Query: 392 SHRVSGLMLANHTNISSGISWQLPKR--EAFLEQFRKEEMFL-----ESLDELDDSRRE- 443
++S + N T I +L KR E F FR+ + FL E +DE++ + E
Sbjct: 360 GLKMSATFIGNSTAIQ-----ELFKRISEQFTAMFRR-KAFLHWYTGEGMDEMEFTEAES 413
Query: 444 -VDELVQEY 451
+++LV EY
Sbjct: 414 NMNDLVSEY 422
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 42/216 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N DL L ++P PRLHF M G+ PLT+
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS----------------------- 278
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
R TV ++ +++ KNMM + P Y+++ + +G + +V + + ++
Sbjct: 279 -QQYRALTVPELTQQMFDAKNMMAACDPRHGR---YLTVAAVFRGRMSMKEVDEQMLNVQ 334
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTGKREAFLE 640
+ F+ W P ++ A+ P ++S + N T I LF R E F
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIP---PRGLKMSATFIGNSTAIQELFKRI----SEQFTA 387
Query: 641 QFRKEEMFL-----ESLDELDDSRRE--VDELVQEY 669
FR+ + FL E +DE++ + E +++LV EY
Sbjct: 388 MFRR-KAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 182 bits (462), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 215/429 (50%), Gaps = 75/429 (17%)
Query: 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 92
Y+PRA+L+DLEP + ++ + P+
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFG------------------------------------ 82
Query: 93 DIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGS 151
+++ P+N + GAGNNWA G Y++G +L + + D++ +E++
Sbjct: 83 -------------QIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 127
Query: 152 DSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSL 211
D L+GF L HS+ GGTGSGMG+ L+ + + +P +I+ T+SV P+ ++SD VV+PYN+
Sbjct: 128 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDTVVEPYNAT 186
Query: 212 LTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYM 271
L++ +L N D +DN AL I L + P++ +N LVS M+ T+ LR+P +
Sbjct: 187 LSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 272 NNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAP 331
N DL L ++P PRLHF M G+ PLT+ R TV ++ +++ KNMM + P
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAKNMMAACDP 305
Query: 332 DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT 391
Y+++ + +G + +V + + ++ + F+ W P ++ A+ P
Sbjct: 306 RHGR---YLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP---PR 359
Query: 392 SHRVSGLMLANHTNISSGISWQLPKR--EAFLEQFRKEEMFL-----ESLDELDDSRRE- 443
++S + N T I +L KR E F FR+ + FL E +DE++ + E
Sbjct: 360 GLKMSATFIGNSTAIQ-----ELFKRISEQFTAMFRR-KAFLHWYTGEGMDEMEFTEAES 413
Query: 444 -VDELVQEY 451
+++LV EY
Sbjct: 414 NMNDLVSEY 422
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 42/216 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N DL L ++P PRLHF M G+ PLT+
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS----------------------- 278
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
R TV ++ +++ KNMM + P Y+++ + +G + +V + + ++
Sbjct: 279 -QQYRALTVPELTQQMFDAKNMMAACDPRHGR---YLTVAAVFRGRMSMKEVDEQMLNVQ 334
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTGKREAFLE 640
+ F+ W P ++ A+ P ++S + N T I LF R E F
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIP---PRGLKMSATFIGNSTAIQELFKRI----SEQFTA 387
Query: 641 QFRKEEMFL-----ESLDELDDSRRE--VDELVQEY 669
FR+ + FL E +DE++ + E +++LV EY
Sbjct: 388 MFRR-KAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 182 bits (462), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 127/429 (29%), Positives = 215/429 (50%), Gaps = 75/429 (17%)
Query: 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 92
Y+PRA+L+DLEP + ++ + P+
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFG------------------------------------ 82
Query: 93 DIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGS 151
+++ P+N + GAGNNWA G Y++G +L + + D++ +E++
Sbjct: 83 -------------QIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 127
Query: 152 DSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSL 211
D L+GF L HS+ GGTGSGMG+ L+ + + +P +I+ T+SV P+ ++SD VV+PYN+
Sbjct: 128 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDTVVEPYNAT 186
Query: 212 LTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYM 271
L++ +L N D +DN AL I L + P++ +N LVS M+ T+ LR+P +
Sbjct: 187 LSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 272 NNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAP 331
N DL L ++P PRLHF M G+ PLT+ R TV ++ +++ KNMM + P
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSKNMMAACDP 305
Query: 332 DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT 391
Y+++ I +G + +V + + ++ + F+ W P ++ A+ P
Sbjct: 306 RHGR---YLTVAAIFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP---PR 359
Query: 392 SHRVSGLMLANHTNISSGISWQLPKR--EAFLEQFRKEEMFL-----ESLDELDDSRRE- 443
++S + N T I +L KR E F FR+ + FL E +DE++ + E
Sbjct: 360 GLKMSATFIGNSTAIQ-----ELFKRISEQFTAMFRR-KAFLHWYTGEGMDEMEFTEAES 413
Query: 444 -VDELVQEY 451
+++LV EY
Sbjct: 414 NMNDLVSEY 422
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 54/216 (25%), Positives = 93/216 (43%), Gaps = 42/216 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N DL L ++P PRLHF M G+ PLT+
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS----------------------- 278
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
R TV ++ +++ KNMM + P Y+++ I +G + +V + + ++
Sbjct: 279 -QQYRALTVPELTQQMFDSKNMMAACDPRHGR---YLTVAAIFRGRMSMKEVDEQMLNVQ 334
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTGKREAFLE 640
+ F+ W P ++ A+ P ++S + N T I LF R E F
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIP---PRGLKMSATFIGNSTAIQELFKRI----SEQFTA 387
Query: 641 QFRKEEMFL-----ESLDELDDSRRE--VDELVQEY 669
FR+ + FL E +DE++ + E +++LV EY
Sbjct: 388 MFRR-KAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 182 bits (462), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 215/429 (50%), Gaps = 75/429 (17%)
Query: 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 92
Y+PRA+L+DLEP + ++ + P+
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFG------------------------------------ 82
Query: 93 DIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGS 151
+++ P+N + GAGNNWA G Y++G +L + + D++ +E++
Sbjct: 83 -------------QIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 127
Query: 152 DSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSL 211
D L+GF L HS+ GGTGSGMG+ L+ + + +P +I+ T+SV P+ ++SD VV+PYN+
Sbjct: 128 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPSP-KVSDTVVEPYNAT 186
Query: 212 LTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYM 271
L++ +L N D +DN AL I L + P++ +N LVS M+ T+ LR+P +
Sbjct: 187 LSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 272 NNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAP 331
N DL L ++P PRLHF M G+ PLT+ R TV ++ +++ KNMM + P
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSKNMMAACDP 305
Query: 332 DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT 391
Y+++ + +G + +V + + ++ + F+ W P ++ A+ P
Sbjct: 306 RHGR---YLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP---PR 359
Query: 392 SHRVSGLMLANHTNISSGISWQLPKR--EAFLEQFRKEEMFL-----ESLDELDDSRRE- 443
++S + N T I +L KR E F FR+ + FL E +DE++ + E
Sbjct: 360 GLKMSATFIGNSTAIQ-----ELFKRISEQFTAMFRR-KAFLHWYTGEGMDEMEFTEAES 413
Query: 444 -VDELVQEY 451
+++LV EY
Sbjct: 414 NMNDLVSEY 422
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 42/216 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N DL L ++P PRLHF M G+ PLT+
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS----------------------- 278
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
R TV ++ +++ KNMM + P Y+++ + +G + +V + + ++
Sbjct: 279 -QQYRALTVPELTQQMFDSKNMMAACDPRHGR---YLTVAAVFRGRMSMKEVDEQMLNVQ 334
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTGKREAFLE 640
+ F+ W P ++ A+ P ++S + N T I LF R E F
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIP---PRGLKMSATFIGNSTAIQELFKRI----SEQFTA 387
Query: 641 QFRKEEMFL-----ESLDELDDSRRE--VDELVQEY 669
FR+ + FL E +DE++ + E +++LV EY
Sbjct: 388 MFRR-KAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 182 bits (461), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 215/429 (50%), Gaps = 75/429 (17%)
Query: 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 92
Y+PRA+L+DLEP + ++ + P+
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFG------------------------------------ 82
Query: 93 DIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGS 151
+++ P+N + GAGNNWA G Y++G +L + + D++ +E++
Sbjct: 83 -------------QIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 127
Query: 152 DSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSL 211
D L+GF L HS+ GGTGSGMG+ L+ + + +P +I+ T+SV P+ ++SD VV+PYN+
Sbjct: 128 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDTVVEPYNAT 186
Query: 212 LTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYM 271
L++ +L N D +DN AL I L + P++ +N LVS M+ T+ LR+P +
Sbjct: 187 LSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 272 NNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAP 331
N DL L ++P PRLHF M G+ PLT+ R TV ++ +++ KNMM + P
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAKNMMAACDP 305
Query: 332 DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT 391
Y+++ + +G + +V + + ++ + F+ W P ++ A+ P
Sbjct: 306 RHGR---YLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP---PR 359
Query: 392 SHRVSGLMLANHTNISSGISWQLPKR--EAFLEQFRKEEMFL-----ESLDELDDSRRE- 443
++S + N T I +L KR E F FR+ + FL E +DE++ + E
Sbjct: 360 GLKMSATFIGNSTAIQ-----ELFKRISEQFTAMFRR-KAFLHWYTGEGMDEMEFTEAES 413
Query: 444 -VDELVQEY 451
+++LV EY
Sbjct: 414 NMNDLVSEY 422
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 42/216 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N DL L ++P PRLHF M G+ PLT+
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS----------------------- 278
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
R TV ++ +++ KNMM + P Y+++ + +G + +V + + ++
Sbjct: 279 -QQYRALTVPELTQQMFDAKNMMAACDPRHGR---YLTVAAVFRGRMSMKEVDEQMLNVQ 334
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTGKREAFLE 640
+ F+ W P ++ A+ P ++S + N T I LF R E F
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIP---PRGLKMSATFIGNSTAIQELFKRI----SEQFTA 387
Query: 641 QFRKEEMFL-----ESLDELDDSRRE--VDELVQEY 669
FR+ + FL E +DE++ + E +++LV EY
Sbjct: 388 MFRR-KAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 182 bits (461), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 126/429 (29%), Positives = 215/429 (50%), Gaps = 75/429 (17%)
Query: 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 92
Y+PRA+L+DLEP + ++ + P+
Sbjct: 59 YVPRAILVDLEPGTMDSVRSGPFG------------------------------------ 82
Query: 93 DIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGS 151
+++ P+N + GAGNNWA G Y++G +L + + D++ +E++
Sbjct: 83 -------------QIFRPDNFVFGQ--SGAGNNWAKGHYTEGAELVDSVLDVVRKESESC 127
Query: 152 DSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSL 211
D L+GF L HS+ GGTGSGMG+ L+ + + +P +I+ T+SV P+ ++SD VV+PYN+
Sbjct: 128 DCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVSDTVVEPYNAT 186
Query: 212 LTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYM 271
L++ +L N D +DN AL I L + P++ +N LVS M+ T+ LR+P +
Sbjct: 187 LSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLRFPGQL 246
Query: 272 NNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAP 331
N DL L ++P PRLHF M G+ PLT+ R TV ++ +++ KNMM + P
Sbjct: 247 NADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDSKNMMAACDP 305
Query: 332 DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT 391
Y+++ + +G + +V + + ++ + F+ W P ++ A+ P
Sbjct: 306 RHGR---YLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP---PR 359
Query: 392 SHRVSGLMLANHTNISSGISWQLPKR--EAFLEQFRKEEMFL-----ESLDELDDSRRE- 443
++S + N T I +L KR E F FR+ + FL E +DE++ + E
Sbjct: 360 GLKMSATFIGNSTAIQ-----ELFKRISEQFTAMFRR-KAFLHWYTGEGMDEMEFTEAES 413
Query: 444 -VDELVQEY 451
+++LV EY
Sbjct: 414 NMNDLVSEY 422
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 93/216 (43%), Gaps = 42/216 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N DL L ++P PRLHF M G+ PLT+
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS----------------------- 278
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
R TV ++ +++ KNMM + P Y+++ + +G + +V + + ++
Sbjct: 279 -QQYRALTVPELTQQMFDSKNMMAACDPRHGR---YLTVAAVFRGRMSMKEVDEQMLNVQ 334
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTGKREAFLE 640
+ F+ W P ++ A+ P ++S + N T I LF R E F
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIP---PRGLKMSATFIGNSTAIQELFKRI----SEQFTA 387
Query: 641 QFRKEEMFL-----ESLDELDDSRRE--VDELVQEY 669
FR+ + FL E +DE++ + E +++LV EY
Sbjct: 388 MFRR-KAFLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 165 bits (417), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 130/429 (30%), Positives = 216/429 (50%), Gaps = 68/429 (15%)
Query: 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 92
Y+PRAVL+DLEP VI I
Sbjct: 60 YVPRAVLVDLEPGVIARI------------------------------------------ 77
Query: 93 DIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYS-QGKKLQEEIFDIIDREADGS 151
+G D +L++ ++ + GA NNWA GY+ +G+K+ ++I ++ID + +
Sbjct: 78 -------EGGDMSQLFDESSIV--RKIPGAANNWARGYNVEGEKVIDQIMNVIDSAVEKT 128
Query: 152 DSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSL 211
L+GF++ HSI GG+GSG+GS +LE L +PKK I T+SV P+ ISD V+PYN++
Sbjct: 129 KGLQGFLMTHSIGGGSGSGLGSLILERLRQAYPKKRIFTFSVVPSP-LISDSAVEPYNAI 187
Query: 212 LTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYM 271
LTL+R+ NAD V+LDN AL RIA +L+ +P++ +N++++ I++ T++LR+P +
Sbjct: 188 LTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTASLRFPGKL 246
Query: 272 NNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAP 331
N DL + L+P P HFL + P+ + +R T D+ R N TA
Sbjct: 247 NTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVR-TNFPDLARETFAQDNF---TAA 302
Query: 332 DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPA--GIQVALSKKSPYV 389
Q Y++ + +G+V V +++ I RK +N+ + PA G+++ ++ +P
Sbjct: 303 IDWQQGVYLAASALFRGDVKAKDVDENMATI--RKSLNYASYMPASGGLKLGYAETAPEG 360
Query: 390 PTSHRVSGLMLANHTNISSGISWQLPKREAFLEQFRKEEMFLE---SLDELDDSRREVDE 446
S SGL L NHT I++ + + + + + S D + +R ++
Sbjct: 361 FAS---SGLALVNHTGIAAVFERLIAQFDIMFDNHAYTHWYENAGVSRDMMAKARNQIAT 417
Query: 447 LVQEYCAAT 455
L Q Y A+
Sbjct: 418 LAQSYRDAS 426
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 42/220 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N DL + L+P P HFL + P+ + +R
Sbjct: 242 FPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQEGQVR------------------ 283
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
T D+ R N TA Q Y++ + +G+V V +++ IR
Sbjct: 284 ------TNFPDLARETFAQDNF---TAAIDWQQGVYLAASALFRGDVKAKDVDENMATIR 334
Query: 581 ERKLVNFIPWSPA--GIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTG----- 633
K +N+ + PA G+++ ++ +P S SGL L NHT I+++F+R +
Sbjct: 335 --KSLNYASYMPASGGLKLGYAETAPEGFAS---SGLALVNHTGIAAVFERLIAQFDIMF 389
Query: 634 KREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAAT 673
A+ + + S D + +R ++ L Q Y A+
Sbjct: 390 DNHAYTHWYENAGV---SRDMMAKARNQIATLAQSYRDAS 426
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 157 bits (397), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/403 (29%), Positives = 207/403 (51%), Gaps = 34/403 (8%)
Query: 70 GGG--AGNNWASGYSQGKKLQEEIF-----DIIDREADGSDSLELYNPENVYLSKDGGGA 122
GGG + N + S GK + +F +ID G+ +L++PE + K+ A
Sbjct: 43 GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT-YRQLFHPEQLITGKED--A 99
Query: 123 GNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLAD 181
NN+A G Y+ GK++ + + D I + AD L+GF++ HS GGTGSG S L+E L+
Sbjct: 100 ANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSV 159
Query: 182 RFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241
+ KK +S++P ++S VV+PYNS+LT ++DC ++DN A+ I L
Sbjct: 160 DYGKKSKLEFSIYP-APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 218
Query: 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAE 301
IE P++ +N L+S I++ T++LR+ +N DL L+P PR+HF + Y P+ +
Sbjct: 219 IERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 302 HEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQR 361
E A + +V ++ +P N MV P YM+ + +G+V P V+ ++
Sbjct: 279 -EKAYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCLLYRGDVVPKDVNAAIAT 334
Query: 362 IRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----MLANHTNISSGISWQ--- 413
I+ ++ + F+ W P G +V ++ + P V ++ + ML+N T I+ +W
Sbjct: 335 IKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE--AWARLD 392
Query: 414 -----LPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 451
+ + AF+ + E M E ++R ++ L ++Y
Sbjct: 393 HKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 442 REVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASI 501
R + ++V A+ R D +N DL L+P PR+HF + Y P+ + +
Sbjct: 229 RLISQIVSSITASLRFD----GALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK---- 280
Query: 502 RKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILN 561
A + +V ++ +P N MV P YM+
Sbjct: 281 --------------------AYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCL 317
Query: 562 IIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----M 616
+ +G+V P V+ ++ I+ ++ + F+ W P G +V ++ + P V ++ + M
Sbjct: 318 LYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 377
Query: 617 LANHTNISSLFDRC-----LTGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
L+N T I+ + R L + AF+ + E M E ++R ++ L ++Y
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/403 (29%), Positives = 207/403 (51%), Gaps = 34/403 (8%)
Query: 70 GGG--AGNNWASGYSQGKKLQEEIF-----DIIDREADGSDSLELYNPENVYLSKDGGGA 122
GGG + N + S GK + +F +ID G+ +L++PE + K+ A
Sbjct: 43 GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT-YRQLFHPEQLITGKED--A 99
Query: 123 GNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLAD 181
NN+A G Y+ GK++ + + D I + AD L+GF++ HS GGTGSG S L+E L+
Sbjct: 100 ANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSV 159
Query: 182 RFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241
+ KK +S++P ++S VV+PYNS+LT ++DC ++DN A+ I L
Sbjct: 160 DYGKKSKLEFSIYP-APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 218
Query: 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAE 301
IE P++ +N L+S I++ T++LR+ +N DL L+P PR+HF + Y P+ +
Sbjct: 219 IERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 302 HEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQR 361
E A + +V ++ +P N MV P YM+ + +G+V P V+ ++
Sbjct: 279 -EKAYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCLLYRGDVVPKDVNAAIAT 334
Query: 362 IRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----MLANHTNISSGISWQ--- 413
I+ ++ + F+ W P G +V ++ + P V ++ + ML+N T I+ +W
Sbjct: 335 IKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE--AWARLD 392
Query: 414 -----LPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 451
+ + AF+ + E M E ++R ++ L ++Y
Sbjct: 393 HKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 442 REVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASI 501
R + ++V A+ R D +N DL L+P PR+HF + Y P+ + +
Sbjct: 229 RLISQIVSSITASLRFD----GALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK---- 280
Query: 502 RKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILN 561
A + +V ++ +P N MV P YM+
Sbjct: 281 --------------------AYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCL 317
Query: 562 IIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----M 616
+ +G+V P V+ ++ I+ ++ + F+ W P G +V ++ + P V ++ + M
Sbjct: 318 LYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 377
Query: 617 LANHTNISSLFDRC-----LTGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
L+N T I+ + R L + AF+ + E M E ++R ++ L ++Y
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 157 bits (396), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 119/403 (29%), Positives = 207/403 (51%), Gaps = 34/403 (8%)
Query: 70 GGG--AGNNWASGYSQGKKLQEEIF-----DIIDREADGSDSLELYNPENVYLSKDGGGA 122
GGG + N + S GK + +F +ID G+ +L++PE + K+ A
Sbjct: 43 GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT-YRQLFHPEQLITGKED--A 99
Query: 123 GNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLAD 181
NN+A G Y+ GK++ + + D I + AD L+GF++ HS GGTGSG S L+E L+
Sbjct: 100 ANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSV 159
Query: 182 RFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241
+ KK +S++P ++S VV+PYNS+LT ++DC ++DN A+ I L
Sbjct: 160 DYGKKSKLEFSIYP-APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 218
Query: 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAE 301
IE P++ +N L+S I++ T++LR+ +N DL L+P PR+HF + Y P+ +
Sbjct: 219 IERPTYTNLNRLISQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 302 HEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQR 361
E A + +V ++ +P N MV P YM+ + +G+V P V+ ++
Sbjct: 279 -EKAYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCLLYRGDVVPKDVNAAIAT 334
Query: 362 IRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----MLANHTNISSGISWQ--- 413
I+ ++ + F+ W P G +V ++ + P V ++ + ML+N T I+ +W
Sbjct: 335 IKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE--AWARLD 392
Query: 414 -----LPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 451
+ + AF+ + E M E ++R ++ L ++Y
Sbjct: 393 HKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
Score = 62.8 bits (151), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 442 REVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASI 501
R + ++V A+ R D +N DL L+P PR+HF + Y P+ + +
Sbjct: 229 RLISQIVSSITASLRFD----GALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK---- 280
Query: 502 RKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILN 561
A + +V ++ +P N MV P YM+
Sbjct: 281 --------------------AYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCL 317
Query: 562 IIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----M 616
+ +G+V P V+ ++ I+ ++ + F+ W P G +V ++ + P V ++ + M
Sbjct: 318 LYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 377
Query: 617 LANHTNISSLFDRC-----LTGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
L+N T I+ + R L + AF+ + E M E ++R ++ L ++Y
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 156 bits (395), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 206/403 (51%), Gaps = 34/403 (8%)
Query: 70 GGG--AGNNWASGYSQGKKLQEEIF-----DIIDREADGSDSLELYNPENVYLSKDGGGA 122
GGG + N + S GK + +F +ID G+ +L++PE + K+ A
Sbjct: 43 GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT-YRQLFHPEQLITGKED--A 99
Query: 123 GNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLAD 181
NN+A G Y+ GK++ + + D I + AD L+GF++ HS GGTGSG S L+E L+
Sbjct: 100 ANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSV 159
Query: 182 RFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241
+ KK +S++P ++S VV+PYNS+LT ++DC ++DN A+ I L
Sbjct: 160 DYGKKSKLEFSIYP-APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 218
Query: 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAE 301
IE P++ +N L+ I++ T++LR+ +N DL L+P PR+HF + Y P+ +
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 302 HEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQR 361
E A + +V ++ +P N MV P YM+ + +G+V P V+ ++
Sbjct: 279 -EKAYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCLLYRGDVVPKDVNAAIAT 334
Query: 362 IRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----MLANHTNISSGISWQ--- 413
I+ ++ + F+ W P G +V ++ + P V ++ + ML+N T I+ +W
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE--AWARLD 392
Query: 414 -----LPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 451
+ + AF+ + E M E ++R ++ L ++Y
Sbjct: 393 HKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
Score = 63.5 bits (153), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 442 REVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASI 501
R + ++V A+ R D +N DL L+P PR+HF + Y P+ + +
Sbjct: 229 RLIGQIVSSITASLRFD----GALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK---- 280
Query: 502 RKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILN 561
A + +V ++ +P N MV P YM+
Sbjct: 281 --------------------AYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCL 317
Query: 562 IIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----M 616
+ +G+V P V+ ++ I+ ++ + F+ W P G +V ++ + P V ++ + M
Sbjct: 318 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 377
Query: 617 LANHTNISSLFDRC-----LTGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
L+N T I+ + R L + AF+ + E M E ++R ++ L ++Y
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 155 bits (391), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 205/403 (50%), Gaps = 34/403 (8%)
Query: 70 GGG--AGNNWASGYSQGKKLQEEIF-----DIIDREADGSDSLELYNPENVYLSKDGGGA 122
GGG + N + S GK + +F +ID G+ +L++PE + K+ A
Sbjct: 43 GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT-YRQLFHPEQLITGKED--A 99
Query: 123 GNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLAD 181
NN+A G Y+ GK++ + + D I + AD L+GF + HS GGTGSG S L+E L+
Sbjct: 100 ANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSV 159
Query: 182 RFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241
+ KK +S++P ++S VV+PYNS+LT ++DC ++DN A+ I L
Sbjct: 160 DYGKKSKLEFSIYP-APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 218
Query: 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAE 301
IE P++ +N L+ I++ T++LR+ +N DL L+P PR+HF + Y P+ +
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 302 HEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQR 361
E A + +V ++ +P N MV P YM+ + +G+V P V+ ++
Sbjct: 279 -EKAYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCLLYRGDVVPKDVNAAIAT 334
Query: 362 IRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----MLANHTNISSGISWQ--- 413
I+ ++ + F+ W P G +V ++ + P V ++ + ML+N T I+ +W
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAE--AWARLD 392
Query: 414 -----LPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 451
+ + AF+ + E M E ++R ++ L ++Y
Sbjct: 393 HKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
Score = 63.2 bits (152), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 442 REVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASI 501
R + ++V A+ R D +N DL L+P PR+HF + Y P+ + +
Sbjct: 229 RLIGQIVSSITASLRFD----GALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK---- 280
Query: 502 RKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILN 561
A + +V ++ +P N MV P YM+
Sbjct: 281 --------------------AYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCL 317
Query: 562 IIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----M 616
+ +G+V P V+ ++ I+ ++ + F+ W P G +V ++ + P V ++ + M
Sbjct: 318 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCM 377
Query: 617 LANHTNISSLFDRC-----LTGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
L+N T I+ + R L + AF+ + E M E ++R ++ L ++Y
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 117/403 (29%), Positives = 207/403 (51%), Gaps = 34/403 (8%)
Query: 70 GGG--AGNNWASGYSQGKKLQEEIF-----DIIDREADGSDSLELYNPENVYLSKDGGGA 122
GGG + N + S GK + +F +ID G+ +L++PE + K+ A
Sbjct: 43 GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT-YRQLFHPEQLISGKED--A 99
Query: 123 GNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLAD 181
NN+A G Y+ GK++ + + D + + AD L+GF++ HS GGTGSG S L+E L+
Sbjct: 100 ANNYARGHYTIGKEIIDLVLDRVRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSV 159
Query: 182 RFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241
+ KK +S++P ++S VV+PYNS+LT ++DC ++DN A+ I L
Sbjct: 160 DYGKKSKLEFSIYP-APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 218
Query: 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAE 301
IE P++ +N L+S I++ T++LR+ +N DL L+P PR+HF + Y P+ +
Sbjct: 219 IERPTYTNLNRLMSQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 302 HEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQR 361
E A + +V ++ +P N MV P YM+ + +G+V P V+ ++
Sbjct: 279 -EKAYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCLLYRGDVVPKDVNAAIAT 334
Query: 362 IRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----MLANHTNISSGISWQ--- 413
I+ ++ + F+ W P G +V ++ + P V ++ + ML+N T ++ +W
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAVAE--AWARLD 392
Query: 414 -----LPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 451
+ + AF+ + E M E ++R ++ L ++Y
Sbjct: 393 HKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 51/238 (21%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 442 REVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASI 501
R + ++V A+ R D +N DL L+P PR+HF + Y P+ + +
Sbjct: 229 RLMSQIVSSITASLRFD----GALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK---- 280
Query: 502 RKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILN 561
A + +V ++ +P N MV P YM+
Sbjct: 281 --------------------AYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCL 317
Query: 562 IIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----M 616
+ +G+V P V+ ++ I+ ++ + F+ W P G +V ++ + P V ++ + M
Sbjct: 318 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 377
Query: 617 LANHTNISSLFDRC-----LTGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
L+N T ++ + R L + AF+ + E M E ++R ++ L ++Y
Sbjct: 378 LSNTTAVAEAWARLDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 155 bits (391), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 206/403 (51%), Gaps = 34/403 (8%)
Query: 70 GGG--AGNNWASGYSQGKKLQEEIF-----DIIDREADGSDSLELYNPENVYLSKDGGGA 122
GGG + N + S GK + +F +ID G+ +L++PE + K+ A
Sbjct: 43 GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT-YRQLFHPEQLITGKED--A 99
Query: 123 GNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLAD 181
NN+A G Y+ GK++ + + D I + AD L+GF++ HS GGTGSG S L+E L+
Sbjct: 100 ANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSV 159
Query: 182 RFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241
+ KK +S++P ++S VV+PYNS+LT ++DC ++DN A+ I L
Sbjct: 160 DYGKKSKLEFSIYP-APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 218
Query: 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAE 301
IE P++ +N L+ I++ T++LR+ +N DL L+P PR+HF + Y P+ +
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISA 278
Query: 302 HEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQR 361
E A + +V ++ +P N MV P YM+ + +G+V P V+ ++
Sbjct: 279 -EKAYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCLLYRGDVVPKDVNAAIAT 334
Query: 362 IRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----MLANHTNISSGISWQ--- 413
I+ ++ + F+ W P G +V ++ + P V ++ + ML+N T I+ +W
Sbjct: 335 IKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAE--AWARLD 392
Query: 414 -----LPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 451
+ + AF+ + E M E ++R ++ L ++Y
Sbjct: 393 HKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
Score = 62.4 bits (150), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 99/238 (41%), Gaps = 44/238 (18%)
Query: 442 REVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASI 501
R + ++V A+ R D +N DL L+P PR+HF + Y P+ + +
Sbjct: 229 RLIGQIVSSITASLRFD----GALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK---- 280
Query: 502 RKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILN 561
A + +V ++ +P N MV P YM+
Sbjct: 281 --------------------AYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCL 317
Query: 562 IIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----M 616
+ +G+V P V+ ++ I+ ++ + F+ W P G +V ++ + P V ++ + M
Sbjct: 318 LYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCM 377
Query: 617 LANHTNISSLFDRC-----LTGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
L+N T I+ + R L + AF+ + E M E ++R ++ L ++Y
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 154 bits (388), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 204/403 (50%), Gaps = 34/403 (8%)
Query: 70 GGG--AGNNWASGYSQGKKLQEEIF-----DIIDREADGSDSLELYNPENVYLSKDGGGA 122
GGG + N + S GK + +F +ID G+ +L++PE + K+ A
Sbjct: 43 GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT-YRQLFHPEQLITGKED--A 99
Query: 123 GNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLAD 181
NN+A G Y+ GK++ + + D I + AD L+GF + HS GGTGSG S L+E L+
Sbjct: 100 ANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSV 159
Query: 182 RFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241
+ KK +S++P ++S VV+PYNS+LT ++DC ++DN A+ I L
Sbjct: 160 DYGKKSKLEFSIYP-APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 218
Query: 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAE 301
IE P++ +N L+ I++ T++LR+ +N DL L+P PR HF + Y P+ +
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRAHFPLATYAPVISA 278
Query: 302 HEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQR 361
E A + +V ++ +P N MV P YM+ + +G+V P V+ ++
Sbjct: 279 -EKAYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCLLYRGDVVPKDVNAAIAT 334
Query: 362 IRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----MLANHTNISSGISWQ--- 413
I+ ++ + F+ W P G +V ++ + P V ++ + ML+N T I+ +W
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAE--AWARLD 392
Query: 414 -----LPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 451
+ + AF+ + E M E ++R ++ L ++Y
Sbjct: 393 HKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
Score = 62.0 bits (149), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 98/238 (41%), Gaps = 44/238 (18%)
Query: 442 REVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASI 501
R + ++V A+ R D +N DL L+P PR HF + Y P+ + +
Sbjct: 229 RLIGQIVSSITASLRFD----GALNVDLTEFQTNLVPYPRAHFPLATYAPVISAEK---- 280
Query: 502 RKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILN 561
A + +V ++ +P N MV P YM+
Sbjct: 281 --------------------AYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCL 317
Query: 562 IIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----M 616
+ +G+V P V+ ++ I+ ++ + F+ W P G +V ++ + P V ++ + M
Sbjct: 318 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCM 377
Query: 617 LANHTNISSLFDRC-----LTGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
L+N T I+ + R L + AF+ + E M E ++R ++ L ++Y
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 204/403 (50%), Gaps = 34/403 (8%)
Query: 70 GGG--AGNNWASGYSQGKKLQEEIF-----DIIDREADGSDSLELYNPENVYLSKDGGGA 122
GGG + N + S GK + +F +ID G+ +L++PE + K+ A
Sbjct: 43 GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT-YRQLFHPEQLITGKED--A 99
Query: 123 GNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLAD 181
NN+A G Y+ GK++ + + D I + AD L+GF + HS GGTGSG S L+E L+
Sbjct: 100 ANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSV 159
Query: 182 RFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241
+ KK +S++P ++S VV+PYNS+LT ++DC ++DN A+ I L
Sbjct: 160 DYGKKSKLEFSIYP-APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 218
Query: 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAE 301
IE P++ +N L+ I++ T++LR+ +N DL L+P PR HF + Y P+ +
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISA 278
Query: 302 HEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQR 361
E A + +V ++ +P N MV P YM+ + +G+V P V+ ++
Sbjct: 279 -EKAYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCLLYRGDVVPKDVNAAIAT 334
Query: 362 IRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----MLANHTNISSGISWQ--- 413
I+ ++ + F+ W P G +V ++ + P V ++ + ML+N T I+ +W
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAE--AWARLD 392
Query: 414 -----LPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 451
+ + AF+ + E M E ++R ++ L ++Y
Sbjct: 393 HKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 98/238 (41%), Gaps = 44/238 (18%)
Query: 442 REVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASI 501
R + ++V A+ R D +N DL L+P PR HF + Y P+ + +
Sbjct: 229 RLIGQIVSSITASLRFD----GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEK---- 280
Query: 502 RKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILN 561
A + +V ++ +P N MV P YM+
Sbjct: 281 --------------------AYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCL 317
Query: 562 IIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----M 616
+ +G+V P V+ ++ I+ ++ + F+ W P G +V ++ + P V ++ + M
Sbjct: 318 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCM 377
Query: 617 LANHTNISSLFDRC-----LTGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
L+N T I+ + R L + AF+ + E M E ++R ++ L ++Y
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 204/403 (50%), Gaps = 34/403 (8%)
Query: 70 GGG--AGNNWASGYSQGKKLQEEIF-----DIIDREADGSDSLELYNPENVYLSKDGGGA 122
GGG + N + S GK + +F +ID G+ +L++PE + K+ A
Sbjct: 43 GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT-YRQLFHPEQLITGKED--A 99
Query: 123 GNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLAD 181
NN+A G Y+ GK++ + + D I + AD L+GF + HS GGTGSG S L+E L+
Sbjct: 100 ANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSV 159
Query: 182 RFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241
+ KK +S++P ++S VV+PYNS+LT ++DC ++DN A+ I L
Sbjct: 160 DYGKKSKLEFSIYP-APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 218
Query: 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAE 301
IE P++ +N L+ I++ T++LR+ +N DL L+P PR HF + Y P+ +
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISA 278
Query: 302 HEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQR 361
E A + +V ++ +P N MV P YM+ + +G+V P V+ ++
Sbjct: 279 -EKAYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCLLYRGDVVPKDVNAAIAT 334
Query: 362 IRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----MLANHTNISSGISWQ--- 413
I+ ++ + F+ W P G +V ++ + P V ++ + ML+N T I+ +W
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAE--AWARLD 392
Query: 414 -----LPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 451
+ + AF+ + E M E ++R ++ L ++Y
Sbjct: 393 HKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 98/238 (41%), Gaps = 44/238 (18%)
Query: 442 REVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASI 501
R + ++V A+ R D +N DL L+P PR HF + Y P+ + +
Sbjct: 229 RLIGQIVSSITASLRFD----GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEK---- 280
Query: 502 RKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILN 561
A + +V ++ +P N MV P YM+
Sbjct: 281 --------------------AYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCL 317
Query: 562 IIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----M 616
+ +G+V P V+ ++ I+ ++ + F+ W P G +V ++ + P V ++ + M
Sbjct: 318 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCM 377
Query: 617 LANHTNISSLFDRC-----LTGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
L+N T I+ + R L + AF+ + E M E ++R ++ L ++Y
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 118/403 (29%), Positives = 204/403 (50%), Gaps = 34/403 (8%)
Query: 70 GGG--AGNNWASGYSQGKKLQEEIF-----DIIDREADGSDSLELYNPENVYLSKDGGGA 122
GGG + N + S GK + +F +ID G+ +L++PE + K+ A
Sbjct: 43 GGGDDSFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGT-YRQLFHPEQLITGKED--A 99
Query: 123 GNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLAD 181
NN+A G Y+ GK++ + + D I + AD L+GF + HS GGTGSG S L+E L+
Sbjct: 100 ANNYARGHYTIGKEIIDLVLDRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSV 159
Query: 182 RFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241
+ KK +S++P ++S VV+PYNS+LT ++DC ++DN A+ I L
Sbjct: 160 DYGKKSKLEFSIYP-APQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLD 218
Query: 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAE 301
IE P++ +N L+ I++ T++LR+ +N DL L+P PR HF + Y P+ +
Sbjct: 219 IERPTYTNLNRLIGQIVSSITASLRFDGALNVDLTEFQTNLVPYPRGHFPLATYAPVISA 278
Query: 302 HEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQR 361
E A + +V ++ +P N MV P YM+ + +G+V P V+ ++
Sbjct: 279 -EKAYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCLLYRGDVVPKDVNAAIAT 334
Query: 362 IRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----MLANHTNISSGISWQ--- 413
I+ ++ + F+ W P G +V ++ + P V ++ + ML+N T I+ +W
Sbjct: 335 IKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAE--AWARLD 392
Query: 414 -----LPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 451
+ + AF+ + E M E ++R ++ L ++Y
Sbjct: 393 HKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
Score = 61.2 bits (147), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 98/238 (41%), Gaps = 44/238 (18%)
Query: 442 REVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASI 501
R + ++V A+ R D +N DL L+P PR HF + Y P+ + +
Sbjct: 229 RLIGQIVSSITASLRFD----GALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEK---- 280
Query: 502 RKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILN 561
A + +V ++ +P N MV P YM+
Sbjct: 281 --------------------AYHEQLSVAEITNACFEPANQMVKCDPRHGK---YMACCL 317
Query: 562 IIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----M 616
+ +G+V P V+ ++ I+ ++ + F+ W P G +V ++ + P V ++ + M
Sbjct: 318 LYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCM 377
Query: 617 LANHTNISSLFDRC-----LTGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
L+N T I+ + R L + AF+ + E M E ++R ++ L ++Y
Sbjct: 378 LSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGM---EEGEFSEAREDMAALEKDY 432
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 149 bits (376), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 118/433 (27%), Positives = 214/433 (49%), Gaps = 75/433 (17%)
Query: 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 92
++PRA+ +DLEP VI + N PY
Sbjct: 62 FVPRAIYVDLEPNVIDEVRNGPYK------------------------------------ 85
Query: 93 DIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGS 151
+L++PE + K+ A NN+A G Y+ G+++ ++ D I + AD
Sbjct: 86 -------------DLFHPEQLISGKED--AANNYARGHYTVGREILGDVLDRIRKLADQC 130
Query: 152 DSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSL 211
D L+GF+ HS+ GGTGSG+GS LLE L+ + KK ++V+P ++S VV+PYN++
Sbjct: 131 DGLQGFLFTHSLGGGTGSGLGSLLLEELSAEYGKKSKLEFAVYP-APQVSTSVVEPYNTV 189
Query: 212 LTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYM 271
LT +ADC ++DN A+ + L I PSFA +N+L++ +++ T++LR+ +
Sbjct: 190 LTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTASLRFDGSL 249
Query: 272 NNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAP 331
N DL L+P PR+HF + Y+P+ ++ + A +V ++ +P N MV P
Sbjct: 250 NVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSK-AFHESNSVSEITNACFEPGNQMVKCDP 308
Query: 332 DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT 391
YM+ + +G+V V +++++++ +K V + W P G ++ + + P
Sbjct: 309 RDGK---YMATCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPTATP 365
Query: 392 SHRVSGL-----MLANHTNISSGISWQLPKRE--------AFLEQFRKEEMFLESLDELD 438
+ +++ + ML+N T+I+ +W+ R+ AF+ + E M E
Sbjct: 366 NSQLATVDRAVCMLSNTTSIAE--AWKRIDRKFDLMYAKRAFVHWYVGEGM---EEGEFT 420
Query: 439 DSRREVDELVQEY 451
++R ++ L ++Y
Sbjct: 421 EAREDLAALERDY 433
Score = 59.7 bits (143), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 58/301 (19%), Positives = 121/301 (40%), Gaps = 54/301 (17%)
Query: 379 QVALSKKSPYVPTSHRVSGLMLANHTNISSGISWQLPKREAFLEQFRKEEMFLESLDELD 438
QV+ S PY +L HT + + EA + ++ +LD
Sbjct: 177 QVSTSVVEPY--------NTVLTTHTTLEHADCTFMVDNEAIYDMCKR------NLDIPR 222
Query: 439 DSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEV 498
S ++ L+ + ++ + +N DL L+P PR+HF + Y+P+ ++ +
Sbjct: 223 PSFANLNNLIAQVVSSVTASLRFDGSLNVDLNEFQTNLVPYPRIHFPLVSYSPVLSKSK- 281
Query: 499 ASIRKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMS 558
A +V ++ +P N MV P YM+
Sbjct: 282 -----------------------AFHESNSVSEITNACFEPGNQMVKCDPRDGK---YMA 315
Query: 559 ILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL--- 615
+ +G+V V +++++++ +K V + W P G ++ + + P + +++ +
Sbjct: 316 TCLLYRGDVVTRDVQRAVEQVKNKKTVQLVDWCPTGFKIGICYEPPTATPNSQLATVDRA 375
Query: 616 --MLANHTNISSLFDRC-----LTGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQE 668
ML+N T+I+ + R L + AF+ + E M E ++R ++ L ++
Sbjct: 376 VCMLSNTTSIAEAWKRIDRKFDLMYAKRAFVHWYVGEGM---EEGEFTEAREDLAALERD 432
Query: 669 Y 669
Y
Sbjct: 433 Y 433
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 131 bits (330), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 116/435 (26%), Positives = 209/435 (48%), Gaps = 81/435 (18%)
Query: 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 92
Y+PRA+++DLEP VI +
Sbjct: 64 YVPRAIMVDLEPSVIDNV------------------------------------------ 81
Query: 93 DIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGY-SQGKKLQEEIFDIIDREADGS 151
+ GS L+NP N+ +G AG N+A GY G+++ E+ +D E D
Sbjct: 82 ----KATSGS----LFNPANLISRTEG--AGGNFAVGYLGAGREVLPEVMSRLDYEIDKC 131
Query: 152 DSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSL 211
D++ G ++ H+I GGTGSG G+ L+E L +++ + + + +V P+ ++S VV +PYN++
Sbjct: 132 DNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSP-QVSSVVTEPYNTV 190
Query: 212 LTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYM 271
L L +AD ++ DN AL +A + +IE+P+ +N L++ +A T+++R+ ++
Sbjct: 191 FALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMRFSGFL 250
Query: 272 NND--LIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVST 329
+ L L+ L+P P LHFLM + PLT + + + ++++ L ++ +
Sbjct: 251 TVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDR-SKFEELGIEEMIKSLFDNGSVFAAC 309
Query: 330 APDRMSQHCYMSILNIIQGEV-DPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPY 388
+P + ++S + +G + D +L +RE+ + + W P ++ ++ P
Sbjct: 310 SP---MEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTY--WIPTAFKIGYVEQ-PG 363
Query: 389 VPTSHRVSGLMLANHTNISSGIS---------WQLPKREAFLEQFRKEEMFLESLDELDD 439
+ SHR S ++LAN+T I+ + WQ R+AF + E M E ++ L
Sbjct: 364 I--SHRKSMVLLANNTEIARVLDRICHNFDKLWQ---RKAFANWYLNEGMSEEQINVL-- 416
Query: 440 SRREVDELVQEYCAA 454
R ELVQ Y A
Sbjct: 417 -RASAQELVQSYQVA 430
Score = 47.8 bits (112), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/207 (23%), Positives = 88/207 (42%), Gaps = 41/207 (19%)
Query: 472 LIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVASIRKTTVLD 531
L+ L+P P LHFLM + PLT + + + +
Sbjct: 259 LLTNLVPQPSLHFLMCAFAPLTPPDR------------------------SKFEELGIEE 294
Query: 532 VMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEV-DPCQVHKSLQRIRERKLVNFIPW 590
+++ L ++ + +P + ++S + +G + D +L +RE+ + + W
Sbjct: 295 MIKSLFDNGSVFAACSP---MEGRFLSTAVLYRGIMEDKPLADAALAAMREKLPLTY--W 349
Query: 591 SPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTG-----KREAFLEQFRKE 645
P ++ ++ P + SHR S ++LAN+T I+ + DR +R+AF + E
Sbjct: 350 IPTAFKIGYVEQ-PGI--SHRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNE 406
Query: 646 EMFLESLDELDDSRREVDELVQEYCAA 672
M E ++ L R ELVQ Y A
Sbjct: 407 GMSEEQINVL---RASAQELVQSYQVA 430
>pdb|2I6U|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase
Complexed With Carbamoyl Phosphate And L-Norvaline From
Mycobacterium Tuberculosis (Rv1656) At 2.2 A
pdb|2I6U|B Chain B, Crystal Structure Of Ornithine Carbamoyltransferase
Complexed With Carbamoyl Phosphate And L-Norvaline From
Mycobacterium Tuberculosis (Rv1656) At 2.2 A
pdb|2I6U|C Chain C, Crystal Structure Of Ornithine Carbamoyltransferase
Complexed With Carbamoyl Phosphate And L-Norvaline From
Mycobacterium Tuberculosis (Rv1656) At 2.2 A
pdb|2P2G|A Chain A, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|B Chain B, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|C Chain C, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|D Chain D, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|E Chain E, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
pdb|2P2G|F Chain F, Crystal Structure Of Ornithine Carbamoyltransferase From
Mycobacterium Tuberculosis (rv1656): Orthorhombic Form
Length = 307
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 332 DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERK 366
D M+ + ++N + E PCQV LQ I ERK
Sbjct: 109 DAMASVATVPVINALSDEFHPCQVLADLQTIAERK 143
Score = 32.0 bits (71), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 549 DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERK 583
D M+ + ++N + E PCQV LQ I ERK
Sbjct: 109 DAMASVATVPVINALSDEFHPCQVLADLQTIAERK 143
>pdb|2B4V|A Chain A, Structural Basis For Utp Specificity Of Rna Editing
Tutases From Trypanosoma Brucei
Length = 468
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 268 PSYMNNDLIGLIAPLIPTPRLHF------LMTGYTPLTAEHEVASIRKTTVLDV 315
P Y+ N+L+GL P +L F YTPL+ E + + +T +LDV
Sbjct: 111 PHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKA--RTALLDV 162
Score = 30.0 bits (66), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 462 PSYMNNDLIGLIAPLIPTPRLHF------LMTGYTPLTAEHEVASIRKTTVLDV 509
P Y+ N+L+GL P +L F YTPL+ E + + +T +LDV
Sbjct: 111 PHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKA--RTALLDV 162
>pdb|2B51|A Chain A, Structural Basis For Utp Specificity Of Rna Editing
Tutases From Trypanosoma Brucei
pdb|2B56|A Chain A, Structural Basis For Utp Specificity Of Rna Editing
Tutases From Trypanosoma Brucei
Length = 468
Score = 30.0 bits (66), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 9/63 (14%)
Query: 260 VSTSTLRY-PSYMNNDLIGLIAPLIPTPRLHF------LMTGYTPLTAEHEVASIRKTTV 312
+ T RY P Y+ N+L+GL P +L F YTPL+ E + + +T +
Sbjct: 102 LRTVIKRYVPHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKA--RTAL 159
Query: 313 LDV 315
LDV
Sbjct: 160 LDV 162
Score = 29.6 bits (65), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 8/54 (14%)
Query: 462 PSYMNNDLIGLIAPLIPTPRLHF------LMTGYTPLTAEHEVASIRKTTVLDV 509
P Y+ N+L+GL P +L F YTPL+ E + + +T +LDV
Sbjct: 111 PHYLRNNLLGLTEARTPVVKLRFANDEKVARARYTPLSEEEDRKA--RTALLDV 162
>pdb|1FDH|G Chain G, Structure Of Human Foetal Deoxyhaemoglobin
pdb|1FDH|H Chain H, Structure Of Human Foetal Deoxyhaemoglobin
Length = 147
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 191 YSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRLHIENP 245
+ F N S ++ P K LT D + LD+ L+ + CD+LH++
Sbjct: 43 FDSFGNLSSASAIMGNPKVKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPE 102
Query: 246 SFAQINSLVSTIMAV 260
+F + +++ T++A+
Sbjct: 103 NFKLLGNVLVTVLAI 117
>pdb|1I3D|A Chain A, Human Carbonmonoxy Hemoglobin Bart's (Gamma4)
pdb|1I3D|B Chain B, Human Carbonmonoxy Hemoglobin Bart's (Gamma4)
pdb|1I3E|A Chain A, Human Azido-Met Hemoglobin Bart's (Gamma4)
pdb|1I3E|B Chain B, Human Azido-Met Hemoglobin Bart's (Gamma4)
Length = 146
Score = 29.6 bits (65), Expect = 5.4, Method: Composition-based stats.
Identities = 18/75 (24%), Positives = 36/75 (48%), Gaps = 5/75 (6%)
Query: 191 YSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRLHIENP 245
+ F N S ++ P K LT D + LD+ L+ + CD+LH++
Sbjct: 42 FDSFGNLSSASAIMGNPKVKAHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPE 101
Query: 246 SFAQINSLVSTIMAV 260
+F + +++ T++A+
Sbjct: 102 NFKLLGNVLVTVLAI 116
>pdb|1Z5X|U Chain U, Hemipteran Ecdysone Receptor Ligand-Binding Domain
Complexed With Ponasterone A
Length = 262
Score = 29.6 bits (65), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 56/138 (40%), Gaps = 42/138 (30%)
Query: 581 ERKLVNFIPWS---------PAGIQVALSKKS----PYVPTSHRV----SGLMLAN---- 619
+R+L I W+ P QV L K SHR G+MLA
Sbjct: 74 DRQLYQLIEWAKHIPHFTELPVEDQVILLKSGWNELLIAGFSHRSMSVKDGIMLATGLVV 133
Query: 620 HTN------ISSLFDRCLT----GKREAFLEQ-----------FRKEEMFLESLDELDDS 658
H N + ++FDR LT RE +++ F E L+S ++++
Sbjct: 134 HRNCAHQAGVGAIFDRVLTELVAKMREMKMDKTELGCLRSIVLFNPEAKGLKSTQQVENL 193
Query: 659 RREVDELVQEYCAATRPD 676
R +V +++EYC T PD
Sbjct: 194 REKVYAILEEYCRQTYPD 211
>pdb|2R80|B Chain B, Pigeon Hemoglobin (Oxy Form)
pdb|2R80|D Chain D, Pigeon Hemoglobin (Oxy Form)
pdb|3DHR|B Chain B, Crystal Structure Determination Of Methemoglobin From
Pigeon At 2 Angstrom Resolution (Columba Livia)
pdb|3DHR|D Chain D, Crystal Structure Determination Of Methemoglobin From
Pigeon At 2 Angstrom Resolution (Columba Livia)
pdb|3DHR|F Chain F, Crystal Structure Determination Of Methemoglobin From
Pigeon At 2 Angstrom Resolution (Columba Livia)
pdb|3DHR|H Chain H, Crystal Structure Determination Of Methemoglobin From
Pigeon At 2 Angstrom Resolution (Columba Livia)
pdb|3MJU|B Chain B, Crystal Structure Determination Of Pigeon (Columba Livia)
Haemoglobin At 3.5 Angstrom Resolution
Length = 146
Score = 28.9 bits (63), Expect = 9.3, Method: Composition-based stats.
Identities = 20/74 (27%), Positives = 33/74 (44%), Gaps = 5/74 (6%)
Query: 191 YSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRLHIENP 245
+S F N + + P K LT D V LDN L+ + CD+LH++
Sbjct: 42 FSSFGNLSSATAISGNPNVKAHGKKVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPE 101
Query: 246 SFAQINSLVSTIMA 259
+F + ++ I+A
Sbjct: 102 NFRLLGDILVIILA 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,162,839
Number of Sequences: 62578
Number of extensions: 850144
Number of successful extensions: 2517
Number of sequences better than 100.0: 51
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 2312
Number of HSP's gapped (non-prelim): 117
length of query: 695
length of database: 14,973,337
effective HSP length: 106
effective length of query: 589
effective length of database: 8,340,069
effective search space: 4912300641
effective search space used: 4912300641
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)