Query psy3432
Match_columns 695
No_of_seqs 310 out of 1717
Neff 7.2
Searched_HMMs 46136
Date Fri Aug 16 16:34:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3432.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3432hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 100.0 4E-113 8E-118 875.9 25.3 397 6-461 30-435 (443)
2 cd02188 gamma_tubulin Gamma-tu 100.0 1.5E-91 3.2E-96 771.6 26.1 390 7-451 30-431 (431)
3 KOG1374|consensus 100.0 1.2E-91 2.5E-96 718.7 22.6 406 7-461 32-446 (448)
4 PLN00222 tubulin gamma chain; 100.0 1E-90 2.2E-95 768.6 27.2 406 7-461 32-448 (454)
5 PLN00221 tubulin alpha chain; 100.0 1.8E-90 4E-95 766.7 25.4 393 7-458 31-439 (450)
6 PTZ00335 tubulin alpha chain; 100.0 5.9E-90 1.3E-94 762.3 26.9 392 7-457 31-438 (448)
7 PTZ00010 tubulin beta chain; P 100.0 4.5E-89 9.8E-94 756.3 25.3 390 7-458 31-429 (445)
8 cd02187 beta_tubulin The tubul 100.0 1.4E-87 3E-92 741.9 27.6 374 19-454 44-424 (425)
9 cd02186 alpha_tubulin The tubu 100.0 1.4E-87 3E-92 743.0 26.1 389 7-454 30-434 (434)
10 PLN00220 tubulin beta chain; P 100.0 9.7E-87 2.1E-91 739.5 25.0 377 19-457 45-428 (447)
11 PTZ00387 epsilon tubulin; Prov 100.0 1.5E-86 3.2E-91 735.7 24.6 372 18-455 38-450 (465)
12 cd02190 epsilon_tubulin The tu 100.0 8.2E-82 1.8E-86 685.7 23.8 345 33-454 28-379 (379)
13 cd02189 delta_tubulin The tubu 100.0 1.8E-80 4E-85 688.4 22.5 370 18-453 38-446 (446)
14 KOG1376|consensus 100.0 9.6E-77 2.1E-81 607.6 14.3 354 18-448 46-406 (407)
15 cd06059 Tubulin The tubulin su 100.0 4.6E-75 9.9E-80 636.8 24.8 353 38-453 23-382 (382)
16 KOG1375|consensus 100.0 6.1E-63 1.3E-67 509.2 11.5 335 18-454 8-349 (369)
17 COG5023 Tubulin [Cytoskeleton] 100.0 3.7E-57 8.1E-62 463.9 13.0 239 412-687 199-442 (443)
18 cd00286 Tubulin_FtsZ Tubulin/F 100.0 3.4E-54 7.5E-59 463.7 22.5 305 38-403 23-328 (328)
19 PLN00222 tubulin gamma chain; 100.0 1.2E-44 2.5E-49 401.4 14.4 224 439-685 223-454 (454)
20 PTZ00010 tubulin beta chain; P 100.0 2.3E-42 4.9E-47 383.5 12.3 205 439-676 220-429 (445)
21 PLN00221 tubulin alpha chain; 100.0 3.9E-42 8.4E-47 381.4 13.3 218 439-686 222-449 (450)
22 cd02188 gamma_tubulin Gamma-tu 100.0 4.5E-42 9.8E-47 378.9 12.6 205 439-669 221-431 (431)
23 PTZ00335 tubulin alpha chain; 100.0 1.8E-41 3.9E-46 375.8 14.3 208 439-676 222-439 (448)
24 KOG1374|consensus 100.0 4E-41 8.6E-46 346.4 10.7 222 438-681 222-448 (448)
25 cd02187 beta_tubulin The tubul 100.0 2.4E-40 5.1E-45 366.0 12.6 201 439-672 219-424 (425)
26 PLN00220 tubulin beta chain; P 100.0 1.7E-40 3.7E-45 369.4 11.5 217 439-688 220-444 (447)
27 cd02186 alpha_tubulin The tubu 100.0 7.7E-40 1.7E-44 362.5 13.2 204 439-672 221-434 (434)
28 PTZ00387 epsilon tubulin; Prov 100.0 7.5E-40 1.6E-44 363.2 12.1 199 439-673 247-450 (465)
29 cd02190 epsilon_tubulin The tu 100.0 1.4E-39 2.9E-44 354.7 13.3 198 440-672 177-379 (379)
30 PF00091 Tubulin: Tubulin/FtsZ 100.0 1.2E-37 2.6E-42 315.8 5.9 179 17-249 37-216 (216)
31 cd06059 Tubulin The tubulin su 100.0 7E-36 1.5E-40 327.5 12.9 199 439-671 179-382 (382)
32 smart00864 Tubulin Tubulin/Fts 100.0 3.4E-35 7.4E-40 292.5 10.0 189 23-269 3-192 (192)
33 KOG1375|consensus 100.0 8.5E-36 1.8E-40 308.3 5.2 179 454-672 166-349 (369)
34 cd02189 delta_tubulin The tubu 100.0 7.8E-33 1.7E-37 307.7 13.8 196 439-670 215-445 (446)
35 KOG1376|consensus 100.0 1.6E-33 3.4E-38 289.8 6.1 178 438-666 220-406 (407)
36 cd06060 misato Human Misato sh 100.0 2.6E-29 5.7E-34 279.2 22.1 383 18-453 37-493 (493)
37 PF03953 Tubulin_C: Tubulin C- 100.0 9.9E-30 2.1E-34 236.1 11.2 125 480-631 1-125 (126)
38 cd02202 FtsZ_type2 FtsZ is a G 100.0 2.9E-29 6.3E-34 270.6 10.0 210 21-296 16-234 (349)
39 cd02191 FtsZ FtsZ is a GTPase 99.9 2.9E-26 6.3E-31 242.8 9.2 262 64-365 4-274 (303)
40 PF03953 Tubulin_C: Tubulin C- 99.9 1E-25 2.2E-30 209.2 8.9 122 286-411 1-122 (126)
41 TIGR00065 ftsZ cell division p 99.9 2E-24 4.4E-29 232.2 8.4 268 62-365 19-294 (349)
42 cd02201 FtsZ_type1 FtsZ is a G 99.9 2.3E-24 5E-29 229.3 7.8 201 64-285 4-210 (304)
43 PRK13018 cell division protein 99.9 1E-23 2.2E-28 227.6 8.1 265 61-365 29-301 (378)
44 PRK09330 cell division protein 99.8 1E-21 2.2E-26 212.2 6.5 201 62-283 15-221 (384)
45 KOG2530|consensus 99.7 1.8E-18 3.9E-23 183.2 8.9 162 106-279 151-323 (483)
46 PF14881 Tubulin_3: Tubulin do 99.7 5.9E-18 1.3E-22 165.9 11.6 151 105-267 17-180 (180)
47 cd00286 Tubulin_FtsZ Tubulin/F 99.7 3.3E-17 7.2E-22 176.7 9.1 152 438-620 177-328 (328)
48 COG0206 FtsZ Cell division GTP 99.5 8.6E-14 1.9E-18 147.8 8.0 202 60-284 11-219 (338)
49 smart00865 Tubulin_C Tubulin/F 99.0 6.2E-11 1.3E-15 108.3 1.9 114 465-631 1-119 (120)
50 smart00865 Tubulin_C Tubulin/F 98.5 4.8E-08 1E-12 89.1 3.0 111 271-411 1-116 (120)
51 PF13809 Tubulin_2: Tubulin li 96.5 0.011 2.3E-07 64.6 9.2 105 114-218 97-218 (345)
52 PF10644 Misat_Tub_SegII: Misa 91.4 0.17 3.8E-06 46.2 3.1 71 20-99 39-113 (115)
53 PLN02847 triacylglycerol lipas 59.1 36 0.00078 39.7 8.4 60 129-192 225-287 (633)
54 COG1528 Ftn Ferritin-like prot 56.5 5.6 0.00012 38.6 1.2 45 621-674 81-146 (167)
55 PF06908 DUF1273: Protein of u 56.1 11 0.00023 37.3 3.2 107 136-261 27-133 (177)
56 PRK14484 phosphotransferase ma 47.8 14 0.0003 34.3 2.3 43 137-182 41-83 (124)
57 PF08259 Periviscerokin: Periv 46.0 10 0.00022 19.8 0.6 9 474-482 3-11 (11)
58 PF03610 EIIA-man: PTS system 43.8 21 0.00046 32.2 2.9 33 136-168 39-71 (116)
59 cd02202 FtsZ_type2 FtsZ is a G 42.6 6.5 0.00014 43.1 -0.8 51 437-490 179-234 (349)
60 PF12953 DUF3842: Domain of un 41.1 30 0.00066 32.1 3.4 49 166-229 7-56 (131)
61 cd06060 misato Human Misato sh 39.3 27 0.00058 40.1 3.4 52 615-671 437-493 (493)
62 cd02191 FtsZ FtsZ is a GTPase 38.8 9.8 0.00021 40.8 -0.1 39 438-476 168-206 (303)
63 cd02201 FtsZ_type1 FtsZ is a G 36.4 9.7 0.00021 40.8 -0.6 42 437-478 168-209 (304)
64 cd00006 PTS_IIA_man PTS_IIA, P 34.4 45 0.00097 30.4 3.5 32 137-168 40-71 (122)
65 COG0572 Udk Uridine kinase [Nu 32.2 48 0.001 33.8 3.6 27 159-186 9-35 (218)
66 TIGR00824 EIIA-man PTS system, 32.0 57 0.0012 29.6 3.8 33 137-169 41-73 (116)
67 cd00741 Lipase Lipase. Lipase 31.6 68 0.0015 30.1 4.4 50 129-182 2-52 (153)
68 PRK13018 cell division protein 30.9 17 0.00037 40.3 0.1 40 437-476 195-234 (378)
69 PF00710 Asparaginase: Asparag 29.1 1.3E+02 0.0027 32.5 6.4 93 130-230 52-145 (313)
70 TIGR00065 ftsZ cell division p 28.5 17 0.00037 39.8 -0.4 39 438-476 185-223 (349)
71 PRK13660 hypothetical protein; 28.2 1.7E+02 0.0036 29.1 6.5 108 136-262 27-134 (182)
72 COG0031 CysK Cysteine synthase 26.8 28 0.00062 37.2 0.9 64 117-197 142-206 (300)
73 PF03283 PAE: Pectinacetyleste 26.7 71 0.0015 35.2 4.0 50 130-185 133-183 (361)
74 PRK09461 ansA cytoplasmic aspa 26.2 1.5E+02 0.0032 32.3 6.4 93 131-231 62-155 (335)
75 cd00519 Lipase_3 Lipase (class 25.6 78 0.0017 31.9 3.9 51 129-183 102-153 (229)
76 PF01713 Smr: Smr domain; Int 23.7 1E+02 0.0022 25.9 3.6 51 139-192 10-66 (83)
77 COG1611 Predicted Rossmann fol 23.4 95 0.0021 31.4 3.9 49 136-197 32-80 (205)
78 PLN02408 phospholipase A1 22.7 1.4E+02 0.0029 33.1 5.2 63 135-202 179-243 (365)
79 TIGR02364 dha_pts dihydroxyace 22.0 62 0.0014 30.0 2.1 41 137-180 41-83 (125)
80 PF03141 Methyltransf_29: Puta 21.0 1.6E+02 0.0034 33.8 5.3 51 427-480 332-387 (506)
81 cd00411 Asparaginase Asparagin 20.9 2.1E+02 0.0045 31.0 6.2 92 131-231 59-153 (323)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=3.9e-113 Score=875.94 Aligned_cols=397 Identities=44% Similarity=0.794 Sum_probs=383.9
Q ss_pred ecCCCceecCC--CCCcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccc
Q psy3432 6 YNPENVYLSKD--GGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQ 83 (695)
Q Consensus 6 ~~~~~~~~~~~--~~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~ 83 (695)
.+|+|.+.++. +++.+++||+|+++|+||||||+|||||.||+.+++|+|+++|+|+|+++|+ +|||||||+
T Consensus 30 I~~~G~~~~~~~~~~er~~vfF~e~~~~k~vPRaI~vDLEP~vid~v~~g~y~~lf~Pen~i~gk--egAgNnwA~---- 103 (443)
T COG5023 30 IGPDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGPYGSLFHPENIIFGK--EGAGNNWAR---- 103 (443)
T ss_pred cCCCCCCCCCcccccccccceeeecCCCccccceEEEecCcchHhhhccCccccccChhheeecc--ccccccccc----
Confidence 36788876663 4589999999999999999999999999999999999999999999999999 899999999
Q ss_pred cchhhhHHhhhhhhhccCCCcccccCCCceeeccCCCCCCCCCCcc-cchhhhhHHHHHHHHHHhhcCCCCCCceeEeee
Q psy3432 84 GKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHS 162 (695)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~S 162 (695)
| |+.|+++.|.++|.|||++|.||+||||+++||
T Consensus 104 ---------------------------------------------GhYtvG~e~~ddvmd~IrreAd~cD~LqGF~l~HS 138 (443)
T COG5023 104 ---------------------------------------------GHYTVGKEIIDDVMDMIRREADGCDGLQGFLLLHS 138 (443)
T ss_pred ---------------------------------------------cccchhHHHHHHHHHHHHHHhhcCccccceeeeee
Confidence 9 999999999999999999999999999999999
Q ss_pred cCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCC
Q psy3432 163 IAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHI 242 (695)
Q Consensus 163 l~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~ 242 (695)
+|||||||+|++|+|+|++|||||.+.+++|+|.+ +.+++||||||++|++|+|.|++|+++++||+||+++|.+.|++
T Consensus 139 ~gGGTGSG~GslLLerl~~eypkK~~~tfSV~P~p-~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i 217 (443)
T COG5023 139 LGGGTGSGLGSLLLERLREEYPKKIKLTFSVFPAP-KVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRI 217 (443)
T ss_pred ccCcCcccHHHHHHHHHHHhcchhheeEEEeccCC-ccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999998 88999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhcCC
Q psy3432 243 ENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQP 322 (695)
Q Consensus 243 ~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~~ 322 (695)
.+|+|.++|++||++|+++|+++||||++|+||.++.+|||||||+||+.++|+|+++..+ ..+++.|+.+++++||+|
T Consensus 218 ~~P~y~~lN~LIs~VmSsvTtslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP~~s~~~-~~~~~~sv~evt~~~f~p 296 (443)
T COG5023 218 QNPSYDDLNQLISTVMSSVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSDGS-AAHEKNSVSEVTNQLFDP 296 (443)
T ss_pred CCCChHHHHHHHHHHHHhhhheeecCccccchHHHHHhcCCCCCcccccccccCcccchhh-HHHhcccHHHHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999999999864 688999999999999999
Q ss_pred CCCccccCCCCCCccchhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCCCCceeEeeecc
Q psy3432 323 KNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLAN 402 (695)
Q Consensus 323 ~n~l~~~~~~~~~~~~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~~~~~s~~~lsN 402 (695)
+|+|++|+|+. |+||++|+++||+++++||++++.++|.|++.+||+|||+++|+++|+++|....+.++++|||+|
T Consensus 297 ~N~mv~~dpr~---g~y~~~~~l~rG~v~~~dV~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsN 373 (443)
T COG5023 297 KNQMVSCDPRK---GRYMAVCLLFRGDVDPRDVSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSN 373 (443)
T ss_pred ccceeeecCCC---CeeeehhHHHhcCCCHHHHHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecC
Confidence 99999999964 999999999999999999999999999999999999999999999999999877788999999999
Q ss_pred chhhHHhhh------hhccCccccccccccccccccccccccchhhhHhHHHHHhhccCCCCCCC
Q psy3432 403 HTNISSGIS------WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPDYLY 461 (695)
Q Consensus 403 stsI~~~~~------~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~~~t~~~r~ 461 (695)
+|+|+.+|+ ++||+||||||||++||||| +||.||++++++|+.+|+++..++|..
T Consensus 374 tTsi~e~fkr~~~qFd~mf~krAFlhwY~~egmee---~EFsEare~~~~L~~eY~~~~~~s~~~ 435 (443)
T COG5023 374 TTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEGMEE---GEFSEAREDVADLEEEYEAAEQDSYLD 435 (443)
T ss_pred cHHHHHHHHHhhhHHHHHHHhhHHHHHHhhccCcc---cchhhHHHHHHHHHHHHHHhccccccc
Confidence 999999999 89999999999999999998 999999999999999999999998765
No 2
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=1.5e-91 Score=771.64 Aligned_cols=390 Identities=76% Similarity=1.188 Sum_probs=364.3
Q ss_pred cCCCceecCC--CCCcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCcccccccc
Q psy3432 7 NPENVYLSKD--GGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQG 84 (695)
Q Consensus 7 ~~~~~~~~~~--~~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~ 84 (695)
+++|.+.... .++.+++||+|+++++|+||||||||||+||+++++++++++|+|+|++.+++++|||||||+
T Consensus 30 ~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~Ep~vi~~i~~~~~~~lf~~~~~~~~~~~~gagnnwa~----- 104 (431)
T cd02188 30 SPDGILEDFATDGGDRKDVFFYQADDEHYVPRAILIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGAGNNWAS----- 104 (431)
T ss_pred CCCCCcCCCccccccccceeEEECCCCccCCcceeccCCcchhhhhhcCccccccCccceEeeccCCCccccHHH-----
Confidence 5666553221 246789999999999999999999999999999999999999999999999955599999999
Q ss_pred chhhhHHhhhhhhhccCCCcccccCCCceeeccCCCCCCCCCCcccchhhhhHHHHHHHHHHhhcCCCCCCceeEeeecC
Q psy3432 85 KKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIA 164 (695)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~Gy~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~ 164 (695)
||..|+++.|+++|+||+++|+||++|||+++||+|
T Consensus 105 --------------------------------------------Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~Slg 140 (431)
T cd02188 105 --------------------------------------------GYSQGEEVQEEILDIIDREADGSDSLEGFVLCHSIA 140 (431)
T ss_pred --------------------------------------------HHHHHHHHHHHHHHHHHHHHhcCCCcceeEEEecCC
Confidence 877899999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCC
Q psy3432 165 GGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIEN 244 (695)
Q Consensus 165 GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~ 244 (695)
||||||+|++|+|+|+|+||++.+++++|+|++...++++++|||++|+|++|.+++|+++++||++|.++|.+.++++.
T Consensus 141 GGTGSG~gs~l~e~L~d~y~~~~~~~~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~ 220 (431)
T cd02188 141 GGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQN 220 (431)
T ss_pred CCcchhHHHHHHHHHHhHcCcceeeeEEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999998732358899999999999999999999999999999999999999999
Q ss_pred CChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhcCCCC
Q psy3432 245 PSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKN 324 (695)
Q Consensus 245 ~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~~~n 324 (695)
|+|.++|++||++|+++|+++||||.+|.|++++++||||||++||++++++|+++......+++++|.+|++.|++++|
T Consensus 221 ~~~~~~N~~ia~~ls~~t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~l~~~l~~~~n 300 (431)
T cd02188 221 PTFDQINSLVSTVMSASTTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKN 300 (431)
T ss_pred CCHHHHHHHHhccCCCcccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcceecCCHHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999999999999999998641145788999999999999999
Q ss_pred CccccCC-CCCCccchhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCCCCceeEeeeccc
Q psy3432 325 MMVSTAP-DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANH 403 (695)
Q Consensus 325 ~l~~~~~-~~~~~~~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~~~~~s~~~lsNs 403 (695)
+|+.|++ . .++||||++++||++.+.++.+++.++++++.++|++|+|+++++++|+++|+..++.++++++++|+
T Consensus 301 ~m~~~~~~~---~~k~la~~~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~s~~~lsNs 377 (431)
T cd02188 301 IMVSTATRK---NGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLANH 377 (431)
T ss_pred ceeecCCCc---cchhHHHHHHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEEEEeccCCccCCCCceeEEEecCC
Confidence 9999987 5 49999999999999999999999999998888889999999999999999997666788999999999
Q ss_pred hhhHHhhh------hhccCcccccccccccccc---ccccccccchhhhHhHHHHHh
Q psy3432 404 TNISSGIS------WQLPKREAFLEQFRKEEMF---LESLDELDDSRREVDELVQEY 451 (695)
Q Consensus 404 tsI~~~~~------~~m~~krAflH~Y~~eGme---e~~~~eF~Ea~~~l~~li~eY 451 (695)
|+|.++|+ ++||+||||||||++|||| | +||.||++++++|+++|
T Consensus 378 t~I~~~f~~i~~kf~~mf~krAflH~Y~~eGme~~~e---~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 378 TSIASLFERILKQFDKLRKRRAFLDNYRKEDMFSDNL---DEFDESREVVQSLIEEY 431 (431)
T ss_pred hHHHHHHHHHHHHHHHHHhhCchhhhccCcCccccch---hHHHHHHHHHHHHHHhC
Confidence 99999999 8999999999999999999 8 99999999999999998
No 3
>KOG1374|consensus
Probab=100.00 E-value=1.2e-91 Score=718.69 Aligned_cols=406 Identities=72% Similarity=1.138 Sum_probs=381.7
Q ss_pred cCCCceecC--CCCCcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCcccccccc
Q psy3432 7 NPENVYLSK--DGGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQG 84 (695)
Q Consensus 7 ~~~~~~~~~--~~~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~ 84 (695)
+++|..-+. .+.|..++||+|..+++|+||||||||||+||+.+++++|+++|+|+|+++.++|+|||||||.
T Consensus 32 s~~g~l~d~~~~~~drKdvFFyqadd~~yipRAvLvDlEPrVIn~~~~~~~s~l~n~eni~~s~~ggGAGNNWA~----- 106 (448)
T KOG1374|consen 32 SPDGILEDFATEGADRKDVFFYQADDNHYIPRAVLVDLEPRVINQILSSPYSGLYNPENIFLSDHGGGAGNNWAS----- 106 (448)
T ss_pred CcCCcccchhhhCccccccceeeccCCccccceeeeccchHHHhccccchhhcccCccceEEecCCCCccccccc-----
Confidence 466664333 3468899999999999999999999999999999999999999999999999999999999998
Q ss_pred chhhhHHhhhhhhhccCCCcccccCCCceeeccCCCCCCCCCCcccchhhhhHHHHHHHHHHhhcCCCCCCceeEeeecC
Q psy3432 85 KKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIA 164 (695)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~Gy~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~ 164 (695)
||..|++..|+|+|.|+|++|.||+++||+++||++
T Consensus 107 --------------------------------------------GY~~G~~~~e~ImdiIdrEad~~DsleGF~l~hSiA 142 (448)
T KOG1374|consen 107 --------------------------------------------GYSQGERVQEDIMDIIDREADGSDSLEGFVLCHSIA 142 (448)
T ss_pred --------------------------------------------ccccchhhHHHHHHHHHHhhcCCCcccceeEEEeec
Confidence 888999999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCC
Q psy3432 165 GGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIEN 244 (695)
Q Consensus 165 GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~ 244 (695)
||||||+||.|+|+|+|+||||.+.+++|||...+.+|+||||||++|+|++|.+.+|+++++||.||.++|.+.+.+.+
T Consensus 143 GGTGSGlGS~llErL~drypkkliqtysVfPn~d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ 222 (448)
T KOG1374|consen 143 GGTGSGLGSFLLERLNDRYPKKLVQTYSVFPNQDESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQN 222 (448)
T ss_pred CCCCcchHHHHHHHHHHhchhhhheeeeeccCCCCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999998855699999999999999999999999999999999999999999999
Q ss_pred CChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCcccccccccccccccccc-ccccccHHHHHHhhcCCC
Q psy3432 245 PSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVA-SIRKTTVLDVMRRLLQPK 323 (695)
Q Consensus 245 ~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~-~~~~~t~~~l~~~l~~~~ 323 (695)
|+|+++|++||.+|++.|.++||||+++.++.+|...|+|+|++||++++|+|+++..... .+++.++.+++++|++|+
T Consensus 223 ptF~~iNqLvstims~st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~~~~~~rkttvldvmRrLL~pk 302 (448)
T KOG1374|consen 223 PTFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNSLATAVRKTTVLDVMRRLLQPK 302 (448)
T ss_pred CCHHHHHHHHHHHHhhccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhhhhhhhhcchHHHHHHHHhCcc
Confidence 9999999999999999999999999999999999999999999999999999999865322 268899999999999999
Q ss_pred CCccccCCCCCCccchhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCCCCceeEeeeccc
Q psy3432 324 NMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANH 403 (695)
Q Consensus 324 n~l~~~~~~~~~~~~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~~~~~s~~~lsNs 403 (695)
|+|++..+...+...|++..++..|.+++.+|.++++++++++..+|+.|.|.+++|++.+.+|+....++.|+.||+|+
T Consensus 303 n~mvs~~~~~~~~~~~~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~val~k~spy~~~~~~vSglml~N~ 382 (448)
T KOG1374|consen 303 NMMVSTADDLSGNPCYISILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQVALSKKSPYVQRAHRVSGLMLANS 382 (448)
T ss_pred hhhhhccccccCCcchHhHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHhhhhcCCCccccccceeeeeeccc
Confidence 99998776332346899999999999999999999999999999999999999999999999999988999999999999
Q ss_pred hhhHHhhh------hhccCccccccccccccccccccccccchhhhHhHHHHHhhccCCCCCCC
Q psy3432 404 TNISSGIS------WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPDYLY 461 (695)
Q Consensus 404 tsI~~~~~------~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~~~t~~~r~ 461 (695)
|+|..+|+ |+|++||||||+|+++||++.+++||.|+++.+++++++|..+...+|..
T Consensus 383 t~i~~lfe~~~~qydklrk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~~~~~Y~~ 446 (448)
T KOG1374|consen 383 TSIVSLFERILGQYDKLRKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAAEQPDYLS 446 (448)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhhcCccccc
Confidence 99999999 99999999999999999998666799999999999999999999998865
No 4
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=1e-90 Score=768.63 Aligned_cols=406 Identities=71% Similarity=1.080 Sum_probs=370.8
Q ss_pred cCCCceecCC--CCCcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCcccccccc
Q psy3432 7 NPENVYLSKD--GGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQG 84 (695)
Q Consensus 7 ~~~~~~~~~~--~~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~ 84 (695)
+++|.+.... .++..++||+|+++++|+||||||||||+||+++++++++++|+|+|+++|++++|||||||+
T Consensus 32 ~~~g~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~~lf~~~~~~~~~~~~gagnn~a~----- 106 (454)
T PLN00222 32 SKDGILEDFATQGGDRKDVFFYQADDEHYIPRALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGAGNNWAS----- 106 (454)
T ss_pred CCCCCccCccccccccccceeEEcCCCcccceeeecCCCcchhhhhccCccccccCccceeecccCCCcccchHH-----
Confidence 4666553221 246889999999999999999999999999999999999999999999999965589999999
Q ss_pred chhhhHHhhhhhhhccCCCcccccCCCceeeccCCCCCCCCCCcccchhhhhHHHHHHHHHHhhcCCCCCCceeEeeecC
Q psy3432 85 KKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIA 164 (695)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~Gy~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~ 164 (695)
||..|+++.|+++|+||+++|.||++|||+++||+|
T Consensus 107 --------------------------------------------Gy~~g~~~~d~i~d~ir~~~E~cd~l~gf~i~~sl~ 142 (454)
T PLN00222 107 --------------------------------------------GYHQGEQVEEDIMDMIDREADGSDSLEGFVLCHSIA 142 (454)
T ss_pred --------------------------------------------hHHHHHHHHHHHHHHHHHHHHhCCCccceEEeecCC
Confidence 877899999999999999999999999999999999
Q ss_pred CCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCC
Q psy3432 165 GGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIEN 244 (695)
Q Consensus 165 GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~ 244 (695)
||||||+|++|+|+|+|+||++.+++++|+|++.+.++++++|||++|+|++|.+++|+++++||++|+++|.+.++++.
T Consensus 143 GGTGSGlgs~lle~L~d~y~~~~~~~~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~ 222 (454)
T PLN00222 143 GGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLEN 222 (454)
T ss_pred CCccchHHHHHHHHHHhhcCCcceeeEEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999998633478999999999999999999999999999999999999999999
Q ss_pred CChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhcCCCC
Q psy3432 245 PSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKN 324 (695)
Q Consensus 245 ~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~~~n 324 (695)
|+|.++|++||++|+++|+++||||.+|+|++++++||||||++||++++++|+.+......+++.++.+++++|+++++
T Consensus 223 p~~~dlN~lIA~~ls~~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~~~~~s~~~~~~~l~~~~n 302 (454)
T PLN00222 223 PTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKN 302 (454)
T ss_pred CCHHHHHHHhccccCCcccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccceeeCCHHHHHHHHhcccC
Confidence 99999999999999999999999999999999999999999999999999999976422245677899999999999999
Q ss_pred CccccCCCC--CCccchhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCCCCceeEeeecc
Q psy3432 325 MMVSTAPDR--MSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLAN 402 (695)
Q Consensus 325 ~l~~~~~~~--~~~~~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~~~~~s~~~lsN 402 (695)
+|+.|+|.. ...|+|||+++++||++.+.++.+++.++++++++.|++|+|+++++++|.++|+..+++++++++|+|
T Consensus 303 ~~~~~~~~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k~~~~~~~~~~~~~~~~s~~~lsN 382 (454)
T PLN00222 303 IMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLAN 382 (454)
T ss_pred ceeecCCccccccccchHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEeeeeccCCCCCCCCCceEEEEEeC
Confidence 999997642 012899999999999999999999999999988899999999999999999998765678899999999
Q ss_pred chhhHHhhh------hhccCcccccccccccccccc-ccccccchhhhHhHHHHHhhccCCCCCCC
Q psy3432 403 HTNISSGIS------WQLPKREAFLEQFRKEEMFLE-SLDELDDSRREVDELVQEYCAATRPDYLY 461 (695)
Q Consensus 403 stsI~~~~~------~~m~~krAflH~Y~~eGmee~-~~~eF~Ea~~~l~~li~eY~~~~t~~~r~ 461 (695)
+|+|.++|+ ++||+||||||||++|||+++ +++||+||+++|++|+++|..+...+|..
T Consensus 383 st~I~~~f~~i~~~f~~mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~~~~~~~y~~ 448 (454)
T PLN00222 383 HTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPDYIK 448 (454)
T ss_pred CHHHHHHHHHHHHHHHHHHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 999999999 999999999999999999310 03999999999999999999998887744
No 5
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.8e-90 Score=766.74 Aligned_cols=393 Identities=30% Similarity=0.568 Sum_probs=366.2
Q ss_pred cCCCceecCC----CCCcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCcccccc
Q psy3432 7 NPENVYLSKD----GGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYS 82 (695)
Q Consensus 7 ~~~~~~~~~~----~~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~ 82 (695)
+++|.+.... ..+..++||+|+.+++|+||||||||||+||++++.++++++|+|++++.++ +|||||||+
T Consensus 31 ~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~lf~~~~~i~~~--~gagNnwa~--- 105 (450)
T PLN00221 31 QPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGK--EDAANNFAR--- 105 (450)
T ss_pred CCCCCccCCccccccchhhhhheeccCCcccccchhcCCCChhhhhhhccCccccccCccceeccC--CCccccccc---
Confidence 4666543221 2467899999999999999999999999999999999999999999999999 999999999
Q ss_pred ccchhhhHHhhhhhhhccCCCcccccCCCceeeccCCCCCCCCCCcc-cchhhhhHHHHHHHHHHhhcCCCCCCceeEee
Q psy3432 83 QGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCH 161 (695)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~ 161 (695)
| |+.|+++.|+++|+||+++|+||++|||+++|
T Consensus 106 ----------------------------------------------Gy~~~g~~~~~~i~d~ir~~~E~cD~l~gf~i~~ 139 (450)
T PLN00221 106 ----------------------------------------------GHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFN 139 (450)
T ss_pred ----------------------------------------------cccchhHHHHHHHHHHHHHHHHhccCccceeEee
Confidence 7 44799999999999999999999999999999
Q ss_pred ecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccC
Q psy3432 162 SIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241 (695)
Q Consensus 162 Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~ 241 (695)
|+|||||||+|++|+|+|+|+||++.+.+++|+|++ +.++++++|||++|++++|.+++|++++|||++|+++|.+.++
T Consensus 140 Sl~GGtGSGlgs~~le~l~d~y~~~~~~~~~v~P~~-~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~ 218 (450)
T PLN00221 140 AVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSP-QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLD 218 (450)
T ss_pred ccCCCccchHHHHHHHHHHHhcccccceeeEeeCCC-cCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcC
Confidence 999999999999999999999999999999999997 5588999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhcC
Q psy3432 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQ 321 (695)
Q Consensus 242 ~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~ 321 (695)
++.|+|.++|++||++|+++|+++||||.++.|++++++||||||++||++++++|+++... ..+++++|.+|++++++
T Consensus 219 ~~~p~~~dlN~lIa~~is~~T~s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~-~~~~~~s~~~l~~~l~~ 297 (450)
T PLN00221 219 IERPTYTNLNRLISQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEK-AYHEQLSVAEITNSAFE 297 (450)
T ss_pred CCCCCHHHHHHHHhhhcccccccccccccccCCHHHHHHhcCCCCCceeeccccCccccccc-cccccCCHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999987643 45678899999999999
Q ss_pred CCCCccccCCCCCCccchhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCC-----CCcee
Q psy3432 322 PKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT-----SHRVS 396 (695)
Q Consensus 322 ~~n~l~~~~~~~~~~~~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~-----~~~~s 396 (695)
+.++|++|+|.. |+|||+++++||++.+.++.+++.+++.++...|++|+|+++++++|.++|..++ +.+++
T Consensus 298 ~~~~l~~~~~~~---~kyla~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~i~~~~~~~~~~~~~~~~~~s 374 (450)
T PLN00221 298 PASMMAKCDPRH---GKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA 374 (450)
T ss_pred ccceeeecCCCc---chHHHHHHHHcCCCCHHHHHHHHHHHHhcCCccccccCCCCEeeeecCCCCccCCCcccccccee
Confidence 999999998864 9999999999999999999999999988888999999999999999999886444 35789
Q ss_pred EeeeccchhhHHhhh------hhccCccccccccccccccccccccccchhhhHhHHHHHhhccCCCC
Q psy3432 397 GLMLANHTNISSGIS------WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPD 458 (695)
Q Consensus 397 ~~~lsNstsI~~~~~------~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~~~t~~ 458 (695)
+++++|+|+|..+|+ ++||+||||||||++||||| +||.||++++++++++|.++....
T Consensus 375 ~~~l~NstsI~~~f~~i~~~f~~mf~rkAflh~Y~~eGmee---~eF~EA~~~l~~li~~Y~~~~~~~ 439 (450)
T PLN00221 375 VCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYEEVGAES 439 (450)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHhhcchhhhhhccCCch---HHHHHHHHHHHHHHHHHHHHhccc
Confidence 999999999999999 99999999999999999998 999999999999999999876553
No 6
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=5.9e-90 Score=762.31 Aligned_cols=392 Identities=31% Similarity=0.572 Sum_probs=366.0
Q ss_pred cCCCceecCC----CCCcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCcccccc
Q psy3432 7 NPENVYLSKD----GGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYS 82 (695)
Q Consensus 7 ~~~~~~~~~~----~~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~ 82 (695)
+++|.+.... .++..++||+|+.+++|+||||||||||+||++++.++++++|+|+|++.|+ +|||||||+
T Consensus 31 ~~~g~~~~~~~~~~~~~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~i~~~--~gagnnwa~--- 105 (448)
T PTZ00335 31 QPDGQMPSDKNIGVEDDAFNTFFSETGAGKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGK--EDAANNFAR--- 105 (448)
T ss_pred CCCCCccCCCcccccchhhcceeEEcCCCccccccccccCCcchhhhcccCccccccCchheeecC--CCCCCcccc---
Confidence 4666543221 2467899999999999999999999999999999999999999999999999 999999999
Q ss_pred ccchhhhHHhhhhhhhccCCCcccccCCCceeeccCCCCCCCCCCcc-cchhhhhHHHHHHHHHHhhcCCCCCCceeEee
Q psy3432 83 QGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCH 161 (695)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~ 161 (695)
| |..|+++.|+++|+||+++|+||++|||+++|
T Consensus 106 ----------------------------------------------Gy~~~G~~~~d~i~d~ir~~~E~cD~l~gf~i~~ 139 (448)
T PTZ00335 106 ----------------------------------------------GHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFH 139 (448)
T ss_pred ----------------------------------------------cccchhhhHhHHHHHHHHHhHHhccCccceeEee
Confidence 7 44799999999999999999999999999999
Q ss_pred ecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccC
Q psy3432 162 SIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241 (695)
Q Consensus 162 Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~ 241 (695)
|+|||||||+|++|+|+|+|+||++.+.+++|+|++ +.++++++|||++|+|++|.+++|+++++||++|+++|.+.++
T Consensus 140 Sl~GGTGSGlgs~l~e~l~d~yp~~~~~~~~v~P~~-~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~ 218 (448)
T PTZ00335 140 AVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPSP-QVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLD 218 (448)
T ss_pred ccCCCccchHHHHHHHHHHHhccccceeeEEecCCC-CCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcC
Confidence 999999999999999999999999999999999997 5589999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhcC
Q psy3432 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQ 321 (695)
Q Consensus 242 ~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~ 321 (695)
+..|+|+++|++||++|+++|+++||||.++.|++++++||||||++||++++++|+++... ..+++++|.+|++++|+
T Consensus 219 ~~~~~~~~~N~~Ia~~is~~t~~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~-~~~~~~s~~~l~~~l~~ 297 (448)
T PTZ00335 219 IERPTYTNLNRLIAQVISSLTASLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEK-AYHEQLSVAEITNSAFE 297 (448)
T ss_pred CCCCCHHHHHHHHHhhhcccccccccccccCCCHHHHhccccCCCCceecccccCccccccc-ccccCCCHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999988643 45778999999999999
Q ss_pred CCCCccccCCCCCCccchhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCC-----CCcee
Q psy3432 322 PKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT-----SHRVS 396 (695)
Q Consensus 322 ~~n~l~~~~~~~~~~~~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~-----~~~~s 396 (695)
++|+|++|+|.. |+|||+++++||++.+.++.+++.++++++...|++|+|+++++++|+++|..++ +.+++
T Consensus 298 ~~n~~~~~~~~~---~~~ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s 374 (448)
T PTZ00335 298 PANMMAKCDPRH---GKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRA 374 (448)
T ss_pred ccceeEecCCCc---cchHHHHHHHcCCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeeeecCCCCccCCCccccccceE
Confidence 999999998764 9999999999999999999999999998889999999999999999999886444 35789
Q ss_pred EeeeccchhhHHhhh------hhccCccccccccccccccccccccccchhhhHhHHHHHhhccCCC
Q psy3432 397 GLMLANHTNISSGIS------WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRP 457 (695)
Q Consensus 397 ~~~lsNstsI~~~~~------~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~~~t~ 457 (695)
+++|+|+|+|..+|+ ++||+||||||||++||||| +||.||++++++++++|.++...
T Consensus 375 ~~~lsNstsI~~~f~~i~~~f~~mf~rkAflh~Y~~eGmee---~eF~EA~~~l~~li~~Y~~~~~~ 438 (448)
T PTZ00335 375 VCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYEEVGAE 438 (448)
T ss_pred EEEecCCcHHHHHHHHHHHHHHHHHhhcchhhhhhccCCch---HHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999999 99999999999999999998 99999999999999999987654
No 7
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=4.5e-89 Score=756.28 Aligned_cols=390 Identities=33% Similarity=0.656 Sum_probs=365.3
Q ss_pred cCCCceecCC--CCCcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCcccccccc
Q psy3432 7 NPENVYLSKD--GGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQG 84 (695)
Q Consensus 7 ~~~~~~~~~~--~~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~ 84 (695)
+++|.+.... ..+.+++||+|.++|+|+|||||||+||+||++++.++++++|+|++++.|+ +|+|||||+
T Consensus 31 ~~~g~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~vi~~i~~~~~~~lf~~~~~~~~~--~gagNnwa~----- 103 (445)
T PTZ00010 31 DPTGTYQGDSDLQLERINVYYNEATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQ--SGAGNNWAK----- 103 (445)
T ss_pred CCCCCCCCCCcccccccceeecccCCCceEEeeeeccCChhhhhhhcccchhhhcCccceeecc--cCCcccccc-----
Confidence 4556543221 1257789999999999999999999999999999998888999999999999 999999999
Q ss_pred chhhhHHhhhhhhhccCCCcccccCCCceeeccCCCCCCCCCCcc-cchhhhhHHHHHHHHHHhhcCCCCCCceeEeeec
Q psy3432 85 KKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSI 163 (695)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl 163 (695)
| |+.|++..++++|+||+++|+||++|||+++||+
T Consensus 104 --------------------------------------------G~~~~g~~~~~~i~d~irk~~E~cd~l~gf~i~~Sl 139 (445)
T PTZ00010 104 --------------------------------------------GHYTEGAELIDSVLDVVRKEAESCDCLQGFQITHSL 139 (445)
T ss_pred --------------------------------------------chhhhhHHHHHHHHHHHhhhhhhccCccceEEEecc
Confidence 7 4579999999999999999999999999999999
Q ss_pred CCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCC
Q psy3432 164 AGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIE 243 (695)
Q Consensus 164 ~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~ 243 (695)
|||||||+|++|+|+|+|+||++.+.+++|+|++ +.+++++||||++|++++|.+++|++++|||++|+++|.++++++
T Consensus 140 ~GGTGSGlgs~l~e~L~dey~~~~~~~~~v~P~~-~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~ 218 (445)
T PTZ00010 140 GGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLT 218 (445)
T ss_pred CCCccccHHHHHHHHHHhhCCccceeeeEecCCc-ccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCC
Confidence 9999999999999999999999999999999997 568999999999999999999999999999999999999999999
Q ss_pred CCChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhcCCC
Q psy3432 244 NPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPK 323 (695)
Q Consensus 244 ~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~~~ 323 (695)
.|+|.++|++||++|+++|+++||||.+|.|++++++||||||++||++++++|+++... ..+++++|.+|++++|+++
T Consensus 219 ~p~~~~lN~lIaq~is~~t~~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~-~~~~~~s~~~l~~~l~~~~ 297 (445)
T PTZ00010 219 TPTYGDLNHLVSAVMSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGS-QQYRGLSVPELTQQMFDAK 297 (445)
T ss_pred CCCHHHHHHHHHhhccccccceecCCcccccHHHHHHHHhcCCCceeeecccCccccccc-cccccCCHHHHHHhHhccc
Confidence 999999999999999999999999999999999999999999999999999999998643 4678899999999999999
Q ss_pred CCccccCCCCCCccchhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCCCCceeEeeeccc
Q psy3432 324 NMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANH 403 (695)
Q Consensus 324 n~l~~~~~~~~~~~~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~~~~~s~~~lsNs 403 (695)
++|++|+|.. |+|||+++++||++.++++.+++.+++.++++.|++|+|+++++++|+++| .+.++++++|+|+
T Consensus 298 n~~~~~~~~~---~k~la~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~---~~~~~s~~~lsNs 371 (445)
T PTZ00010 298 NMMCAADPRH---GRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIPP---KGLKMSVTFIGNS 371 (445)
T ss_pred ceEeecCCCc---chhHHHHHHHcCCCCHHHHHHHHHHHHhhCCccCccccCCCEEEeecCcCC---cCccceEEEecCC
Confidence 9999998864 999999999999999999999999998888999999999999999999988 4678999999999
Q ss_pred hhhHHhhh------hhccCccccccccccccccccccccccchhhhHhHHHHHhhccCCCC
Q psy3432 404 TNISSGIS------WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPD 458 (695)
Q Consensus 404 tsI~~~~~------~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~~~t~~ 458 (695)
|+|..+|+ ++||+||||||||++||||| +||.||+++|++++++|.+.....
T Consensus 372 tsi~~~~~~i~~~f~~m~~rrAflh~Y~~eGmee---~ef~EA~~~l~~li~~Y~~~~~~~ 429 (445)
T PTZ00010 372 TAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMDE---MEFTEAESNMNDLVSEYQQYQDAT 429 (445)
T ss_pred cHHHHHHHHHHHHHHHHHhcCchhhhhhccCCcH---HHHHHHHHHHHHHHHHHHHHhhcc
Confidence 99999999 89999999999999999998 999999999999999999976553
No 8
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=1.4e-87 Score=741.87 Aligned_cols=374 Identities=34% Similarity=0.678 Sum_probs=356.6
Q ss_pred CcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccccchhhhHHhhhhhhh
Q psy3432 19 GAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDRE 98 (695)
Q Consensus 19 ~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~~ 98 (695)
+.+++||+|.++++|+||||+||+||++|++++.++++++|+|++++.|+ +|+|||||+
T Consensus 44 ~~~~~fF~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~~~~~--~gagnnwa~------------------- 102 (425)
T cd02187 44 ERINVYFNEASGGKYVPRAILVDLEPGTMDSVRSGPFGQLFRPDNFVFGQ--SGAGNNWAK------------------- 102 (425)
T ss_pred cccceeEEecCCCceeeeeeeccCChhhhhhhhcCcccceecCcceeecc--CCCCCccCc-------------------
Confidence 67889999999999999999999999999999888888999999999999 999999999
Q ss_pred ccCCCcccccCCCceeeccCCCCCCCCCCcc-cchhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHH
Q psy3432 99 ADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE 177 (695)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle 177 (695)
| |..|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|
T Consensus 103 ------------------------------G~~~~G~~~~e~i~d~ir~~~E~cD~l~gf~~~~sl~GGTGSG~gs~l~e 152 (425)
T cd02187 103 ------------------------------GHYTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLIS 152 (425)
T ss_pred ------------------------------cchhhcHHHHHHHHHHHHHhhccCCCcceEEEEeecCCCccccHHHHHHH
Confidence 7 457999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHHh
Q psy3432 178 HLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTI 257 (695)
Q Consensus 178 ~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ 257 (695)
+|+|+||++.+++++|+|+. ..++++++|||++|+|++|.+++|++++|||++|.++|.+++++..|+|.++|++||++
T Consensus 153 ~l~d~y~~~~~~~~~V~P~~-~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~ 231 (425)
T cd02187 153 KIREEYPDRIMATFSVFPSP-KVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAV 231 (425)
T ss_pred HHHHhcCCcceEEEEEecCC-CcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhcc
Confidence 99999999999999999988 44699999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccCCCCccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhcCCCCCccccCCCCCCcc
Q psy3432 258 MAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQH 337 (695)
Q Consensus 258 i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~~~~~ 337 (695)
|+++|+++||||.+|.|+.++++||||||++||++++++|+++... ..++++++.+|+++||+++++|++|+|.. +
T Consensus 232 is~~t~s~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~-~~~~~~s~~~l~~~l~~~~~~~~~~~~~~---~ 307 (425)
T cd02187 232 MSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAKNMMAACDPRH---G 307 (425)
T ss_pred ccccceeeecCCccccCHHHHHHhcCCCCCceecccccCccccccc-cccccCCHHHHHHHHhCccCeeeccCCCc---c
Confidence 9999999999999999999999999999999999999999997543 45678999999999999999999998764 9
Q ss_pred chhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCCCCceeEeeeccchhhHHhhh------
Q psy3432 338 CYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSGIS------ 411 (695)
Q Consensus 338 ~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~~~~~s~~~lsNstsI~~~~~------ 411 (695)
+|||+++++||++.+.++.+++.+++.++...|++|+|+++++++|+++| .+.++++++|+|+|+|.++|+
T Consensus 308 ~~la~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~---~~~~~s~~~l~N~t~i~~~~~~i~~~f 384 (425)
T cd02187 308 RYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP---RGLKMSATFIGNSTAIQELFKRISEQF 384 (425)
T ss_pred hHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcCCCcCCCCEeeeecCCCC---CCcceeEEEecCCcHHHHHHHHHHHHH
Confidence 99999999999999999999999999888899999999999999999887 467899999999999999999
Q ss_pred hhccCccccccccccccccccccccccchhhhHhHHHHHhhcc
Q psy3432 412 WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAA 454 (695)
Q Consensus 412 ~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~~ 454 (695)
++||+||||||||++||||| +||.||++++++++++|.++
T Consensus 385 ~~m~~kkAflh~Y~~~G~ee---~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 385 TAMFRRKAFLHWYTGEGMDE---MEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred HHHHhcCcchhhhhccCCch---HHHHHHHHHHHHHHHHHHhh
Confidence 89999999999999999998 99999999999999999875
No 9
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=1.4e-87 Score=743.02 Aligned_cols=389 Identities=32% Similarity=0.580 Sum_probs=362.8
Q ss_pred cCCCceecCC----CCCcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCcccccc
Q psy3432 7 NPENVYLSKD----GGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYS 82 (695)
Q Consensus 7 ~~~~~~~~~~----~~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~ 82 (695)
+++|.+.... ..+..++||+|+.+++|+|||||||+||++|++++.++++++|+|++++.|+ +|+|||||+
T Consensus 30 ~~~g~~~~~~~~~~~~~~~~~ff~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~l~~~~~~~~~~--~g~gnnwa~--- 104 (434)
T cd02186 30 QPDGQMPSDKTIGGGDDAFNTFFSETGSGKHVPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGK--EDAANNFAR--- 104 (434)
T ss_pred CCCCCccCCccccccccccceEEEECCCCcCcccccccCCcHHHHHhhccCccccccCccceeecC--CCCCccccc---
Confidence 4666543321 2467899999999999999999999999999999998888999999999999 999999999
Q ss_pred ccchhhhHHhhhhhhhccCCCcccccCCCceeeccCCCCCCCCCCccc-chhhhhHHHHHHHHHHhhcCCCCCCceeEee
Q psy3432 83 QGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGY-SQGKKLQEEIFDIIDREADGSDSLEGFVLCH 161 (695)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~Gy-~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~ 161 (695)
|| ..|+++.|+++|+||+++|+||++|||+++|
T Consensus 105 ----------------------------------------------Gy~~~G~~~~~~i~d~ir~~~E~cD~l~gf~i~~ 138 (434)
T cd02186 105 ----------------------------------------------GHYTIGKEIIDLVLDRIRKLADNCTGLQGFLIFH 138 (434)
T ss_pred ----------------------------------------------ccchhHHHHHHHHHHHHHHHHhcCCCcceeEEEe
Confidence 84 4799999999999999999999999999999
Q ss_pred ecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccC
Q psy3432 162 SIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241 (695)
Q Consensus 162 Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~ 241 (695)
|+|||||||+|++|+|+|+|+||++.+.+++|+|+. ..++++++|||++|+|++|.+++|+++++||++|.++|.+.++
T Consensus 139 sl~GGTGSGlgs~l~e~l~d~y~~~~~~~~~v~P~~-~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~ 217 (434)
T cd02186 139 SFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPSP-QVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLD 217 (434)
T ss_pred ccCCCcchhHHHHHHHHHHHhcCccceeeEEEeCCC-CCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcC
Confidence 999999999999999999999999999999999997 4578999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhcC
Q psy3432 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQ 321 (695)
Q Consensus 242 ~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~ 321 (695)
++.++|+++|++||++|+++|+++||+|.++.|++++++||||||++||++++++|+++... ..+++++|.+|+++||+
T Consensus 218 ~~~~~~~~lN~iIa~~l~~~t~~~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~-~~~~~~s~~~l~~~l~~ 296 (434)
T cd02186 218 IERPTYTNLNRLIAQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEK-AYHEQLSVAEITNACFE 296 (434)
T ss_pred CCCCCHHHHHHHHHHHhhccccceecCCccCCCHHHHHhhccccccceeeccccCcccchhh-ccccCCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999987643 45678999999999999
Q ss_pred CCCCccccCCCCCCccchhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCC-----CCcee
Q psy3432 322 PKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT-----SHRVS 396 (695)
Q Consensus 322 ~~n~l~~~~~~~~~~~~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~-----~~~~s 396 (695)
++++|+.|++.. ++|||+++++||++.+.++.+++.+++.++...|++|+|+++++++|.++|...+ +.+++
T Consensus 297 ~~~~m~~~~~~~---~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~~~~~~~~~~~~~~~~~~~~s 373 (434)
T cd02186 297 PANQMVKCDPRH---GKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRA 373 (434)
T ss_pred ccceeeecCCcc---hhHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcCcccCCCcEeeeecCCCCccCCCccccccceE
Confidence 999999998764 9999999999999999999999999988888999999999999999999886444 45789
Q ss_pred EeeeccchhhHHhhh------hhccCccccccccccccccccccccccchhhhHhHHHHHhhcc
Q psy3432 397 GLMLANHTNISSGIS------WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAA 454 (695)
Q Consensus 397 ~~~lsNstsI~~~~~------~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~~ 454 (695)
+++|+|+|+|.++|+ ++||+||||||||++||||| +||.||++++++++++|.++
T Consensus 374 ~~~l~Nst~i~~~f~~i~~~f~~mf~rkAflh~Y~~~Gmee---~ef~ea~~~l~~li~~Y~~~ 434 (434)
T cd02186 374 VCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGMEE---GEFSEAREDLAALEKDYEEV 434 (434)
T ss_pred EEEecCchHHHHHHHHHHHHHHHHHhhcchhhhhcCcCCch---HHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999 99999999999999999998 99999999999999999863
No 10
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=9.7e-87 Score=739.49 Aligned_cols=377 Identities=34% Similarity=0.681 Sum_probs=359.1
Q ss_pred CcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccccchhhhHHhhhhhhh
Q psy3432 19 GAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDRE 98 (695)
Q Consensus 19 ~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~~ 98 (695)
+.+++||+|.++|+|+|||||||+||+||+++++++++++|+|++++.++ +|||||||+
T Consensus 45 ~~~~~~f~e~~~~~~~pRav~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~--~gagnnwa~------------------- 103 (447)
T PLN00220 45 ERINVYYNEASGGRYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQ--SGAGNNWAK------------------- 103 (447)
T ss_pred ccccceeccCCCCcccceeEecCCcHHHHHHHhcCccccccCccceEecc--cCCCCccCc-------------------
Confidence 57889999999999999999999999999999999999999999999999 999999999
Q ss_pred ccCCCcccccCCCceeeccCCCCCCCCCCcc-cchhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHH
Q psy3432 99 ADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLE 177 (695)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle 177 (695)
| |+.|+++.|+++|+||+++|+||++|||+++||+|||||||+|++|+|
T Consensus 104 ------------------------------G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~~~~sl~GGTGSG~gs~l~~ 153 (447)
T PLN00220 104 ------------------------------GHYTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLIS 153 (447)
T ss_pred ------------------------------eeecccHHHHHHHHHHHHHHHHhCcCcCceEEEEecCCCccccHHHHHHH
Confidence 7 457999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHHh
Q psy3432 178 HLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTI 257 (695)
Q Consensus 178 ~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ 257 (695)
+|+|+||++.+++++|+|++ ..++++++|||++|+|++|.+++|+++++||++|.++|.+.+++..|+|.++|++||+.
T Consensus 154 ~l~~~y~~~~~~~~~v~P~~-~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~ 232 (447)
T PLN00220 154 KIREEYPDRMMLTFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISAT 232 (447)
T ss_pred HHHHhccccceeeeEEECCC-cCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhcc
Confidence 99999999999999999997 56899999999999999999999999999999999999999999999999999999999
Q ss_pred hhccccccccCCCCccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhcCCCCCccccCCCCCCcc
Q psy3432 258 MAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQH 337 (695)
Q Consensus 258 i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~~~~~ 337 (695)
++++|+++||||.++.|+.+++++|||||++||+.++++|+.+... ..+++++|.++++++++++++++++++.. |
T Consensus 233 is~it~slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~-~~~~~~t~~~l~~~l~~~~n~l~~~~~~~---g 308 (447)
T PLN00220 233 MSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRALTVPELTQQMWDAKNMMCAADPRH---G 308 (447)
T ss_pred ccccchhhccCCcCCccHHHHHHHhCCccceeEeecccCccccccc-ccccccCHHHHHHHHHhhhhcccccCCCC---c
Confidence 9999999999999999999999999999999999999999987542 46788999999999999999999988764 9
Q ss_pred chhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCCCCceeEeeeccchhhHHhhh------
Q psy3432 338 CYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSGIS------ 411 (695)
Q Consensus 338 ~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~~~~~s~~~lsNstsI~~~~~------ 411 (695)
+|||+++++||++++.++.+++.+++.++.+.|++|+|+++++++|.++| .+.++++++|+|+|+|..+|+
T Consensus 309 k~la~~~~~RG~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~~~~~~~---~~~~~s~~~l~N~t~i~~~~~~i~~~f 385 (447)
T PLN00220 309 RYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSSVCDIPP---KGLKMASTFIGNSTSIQEMFRRVSEQF 385 (447)
T ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHhhCCCccccccCCCEEEeecCCCC---CCcceeeEEecCchHHHHHHHHHHHHH
Confidence 99999999999999999999999998888899999999999999999988 467899999999999999999
Q ss_pred hhccCccccccccccccccccccccccchhhhHhHHHHHhhccCCC
Q psy3432 412 WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRP 457 (695)
Q Consensus 412 ~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~~~t~ 457 (695)
++||+||||||||++||||| +||.||+++|++++++|.+....
T Consensus 386 ~~m~~rkAflh~Y~~~Gmee---~ef~ea~~~l~~li~~Y~~~~~~ 428 (447)
T PLN00220 386 TAMFRRKAFLHWYTGEGMDE---MEFTEAESNMNDLVSEYQQYQDA 428 (447)
T ss_pred HHHHhcCcchhhhcccCCch---HHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999998 99999999999999999877654
No 11
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=1.5e-86 Score=735.70 Aligned_cols=372 Identities=31% Similarity=0.557 Sum_probs=348.5
Q ss_pred CCcccccccCCC-----CC--CccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccccchhhhH
Q psy3432 18 GGAGNNWASGAD-----DE--HYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEE 90 (695)
Q Consensus 18 ~~~~~~~f~e~~-----~~--~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~ 90 (695)
++..++||+|.+ .+ +|+|||||||+||+||+++++++++++|+|++++.++ +|||||||+
T Consensus 38 ~~~~~~fF~~~~~~~~~~~~~~~~pRav~vD~Ep~vi~~i~~~~~~~~f~~~~~i~~~--~GaGNnwa~----------- 104 (465)
T PTZ00387 38 DDARDSFFENVSENVNRPGKENLKARAVLVDMEEGVLNQILKSPLGDLFDENFFVSDV--SGAGNNWAV----------- 104 (465)
T ss_pred cccccceecccccccccCCCccccCcccccCCCccHHHHhhcCCcccccCcccccccC--CCCCCCcCC-----------
Confidence 468899999633 34 4999999999999999999999999999999999999 999999999
Q ss_pred HhhhhhhhccCCCcccccCCCceeeccCCCCCCCCCCcc-cchhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCC
Q psy3432 91 IFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGS 169 (695)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGS 169 (695)
| |..|++..|+++|+||+++|+||++|||+++||+||||||
T Consensus 105 --------------------------------------G~~~~g~~~~d~~~d~Ir~~~E~cD~l~gf~i~~slgGGTGS 146 (465)
T PTZ00387 105 --------------------------------------GHMEYGDKYIDSISESVRRQVEQCDSLQSFFLMHSLGGGTGS 146 (465)
T ss_pred --------------------------------------CcccccHHHHHHHHHHHHHHHHhccCcceEEEEeecCCCcch
Confidence 7 4478999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCC-----
Q psy3432 170 GMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIEN----- 244 (695)
Q Consensus 170 Glgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~----- 244 (695)
|+|++|+|+|+|+||++.+++++|+|+.. ++++++|||++|+|++|.+++|+++++||++|.++|.+.++++.
T Consensus 147 Glgs~lle~l~d~y~~~~~~~~~V~P~~~--~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~ 224 (465)
T PTZ00387 147 GLGTRILGMLEDEFPHVFRFCPVVFPSAV--DDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAK 224 (465)
T ss_pred hHHHHHHHHHHHhcccCceeeeEecCCCC--CcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCcccccccc
Confidence 99999999999999999999999999863 88999999999999999999999999999999999998877663
Q ss_pred ----------------------CChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCccccccccccccccc
Q psy3432 245 ----------------------PSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEH 302 (695)
Q Consensus 245 ----------------------~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~ 302 (695)
++|+++|++||++|+++|+++||||.+|+|++++.+||||||++||++++++|+.+..
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~ 304 (465)
T PTZ00387 225 GNIKRGPQPHKYSVAKPTETKKLPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLK 304 (465)
T ss_pred ccccccccccccccccccccccccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchh
Confidence 8899999999999999999999999999999999999999999999999999998754
Q ss_pred cccccccccHHHHHHhhcCCCCCccccCCCCCCccchhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEE
Q psy3432 303 EVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVAL 382 (695)
Q Consensus 303 ~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~~~~~~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~ 382 (695)
. ..+++.+|.+|+++|++++++|+.|+|.. ++||||++++||++.+.++.+++.++|++ ..|++|+|+++++++
T Consensus 305 ~-~~~~~~s~~~l~~~l~~~~~~m~~~~~~~---~k~la~~~~~RG~~~~~~v~~~~~~lk~~--~~f~~W~p~~~~~~~ 378 (465)
T PTZ00387 305 D-VAVGPRRLDQMFKDCLDPDHQMVAATPEA---GKYLATALIVRGPQNVSDVTRNILRLKEQ--LNMIYWNEDGFKTGL 378 (465)
T ss_pred h-cccccCCHHHHHHHHhcccCeeeecCCCc---chHHHHHHHHcCCCChHHHHHHHHHHhcc--ccccccCCCceEEEe
Confidence 3 45677899999999999999999998764 99999999999999999999999999855 999999999999999
Q ss_pred eecCCCcCCCCceeEeeeccchhhHHhhh------hhccCccccccccccccccccccccccchhhhHhHHHHHhhccC
Q psy3432 383 SKKSPYVPTSHRVSGLMLANHTNISSGIS------WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAAT 455 (695)
Q Consensus 383 ~~~~p~~~~~~~~s~~~lsNstsI~~~~~------~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~~~ 455 (695)
|.++| .+.++++++|+|+|+|.++|+ ++||+||||||||+ +|||| +||+||+++|++++++|.++.
T Consensus 379 ~~~~~---~~~~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egmee---~eF~ea~~~l~~li~~Y~~~~ 450 (465)
T PTZ00387 379 CNVSP---LGQPYSLLCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLEQ---AYFDETLETIQNLIDDYAYLQ 450 (465)
T ss_pred eccCC---CCCceeEEEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccch---HHHHHHHHHHHHHHHHHHHHh
Confidence 99988 467899999999999999999 89999999999999 89998 999999999999999999886
No 12
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=8.2e-82 Score=685.70 Aligned_cols=345 Identities=32% Similarity=0.622 Sum_probs=327.6
Q ss_pred ccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccccchhhhHHhhhhhhhccCCCcccccCCCc
Q psy3432 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPEN 112 (695)
Q Consensus 33 ~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (695)
|+||||+||+||+||++++.++++++|+|++++.++ .|+|||||+
T Consensus 28 ~~pR~v~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~--~gaGnn~a~--------------------------------- 72 (379)
T cd02190 28 LKARAVLIDMEEGVVNEILKGPLRDLFDETQLVTDV--SGAGNNWAV--------------------------------- 72 (379)
T ss_pred cCCcceeccCChhHHHHHhcCccccccCcccccccC--CCCCCCccc---------------------------------
Confidence 899999999999999999998889999999999999 899999999
Q ss_pred eeeccCCCCCCCCCCccc-chhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhCCCceeEEE
Q psy3432 113 VYLSKDGGGAGNNWASGY-SQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTY 191 (695)
Q Consensus 113 ~~~~~~~~g~g~~~~~Gy-~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~deyp~~~i~~~ 191 (695)
|| ..|++..|+++|+||+++|+||++|||+++||+|||||||+|++|+|.|+|+||++.++++
T Consensus 73 ----------------G~~~~g~~~~~~~~d~ir~~~E~cd~l~gf~i~~sl~GGTGSG~gs~l~e~l~~~y~~~~~~~~ 136 (379)
T cd02190 73 ----------------GYHQYGHQYIDSILEKIRKAAEKCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVT 136 (379)
T ss_pred ----------------eeeccchhHHHHHHHHHHHHHhhCcCcceEEEEeecCCCcchhHHHHHHHHHHHhcCccceEEE
Confidence 74 4689999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHHhhhccccccccCCCC
Q psy3432 192 SVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYM 271 (695)
Q Consensus 192 ~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~ 271 (695)
+|+|+.. ++++++|||++|+|++|.+++|+++++||++|. +|.++|++||+.|+++|+++||||.+
T Consensus 137 ~v~P~~~--~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~rf~g~~ 202 (379)
T cd02190 137 SVYPSAD--DDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMRFEGSL 202 (379)
T ss_pred eecCCCC--CCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceeeccccc
Confidence 9999983 888999999999999999999999999999998 69999999999999999999999999
Q ss_pred ccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhcCCCCCccccCCCCCCccchhhhhhhhhCCCC
Q psy3432 272 NNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVD 351 (695)
Q Consensus 272 n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~~~~~~~ls~~~~~RG~~~ 351 (695)
|.|++++.+||||||++||++++++|+++... ..+++.++.+|+++|++++++|+.+++.. ++|||+++++||++.
T Consensus 203 n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~-~~~~~~s~~~l~~~l~~~~~~m~~~~~~~---~kyls~~~i~RG~~~ 278 (379)
T cd02190 203 NVDLNEITMNLVPFPRLHFLVSSLSPLYPLAD-VNVPPRRLDQMFSDAFSRNHQLIRADPKH---GLYLACALLVRGNVS 278 (379)
T ss_pred ccchhhhccccccCCCceecccccccccchhh-ccccCCCHHHHHHHHHccccceeecCCCc---chHHHHHHHHcCCCC
Confidence 99999999999999999999999999988543 45678999999999999999999988754 999999999999999
Q ss_pred hHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCCCCceeEeeeccchhhHHhhh------hhccCccccccccc
Q psy3432 352 PCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSGIS------WQLPKREAFLEQFR 425 (695)
Q Consensus 352 ~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~~~~~s~~~lsNstsI~~~~~------~~m~~krAflH~Y~ 425 (695)
+.++.+++.+++++ ..|++|+|+++++++|+++| .+.++++++++|+|+|..+|+ ++||+||||||||+
T Consensus 279 ~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~~~~~~---~~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~ 353 (379)
T cd02190 279 VSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVPP---VGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYT 353 (379)
T ss_pred HHHHHHHHHHHhcc--CcCcCcCCCcEEEeecccCC---CCcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhh
Confidence 99999999999876 78999999999999999988 467899999999999999999 89999999999999
Q ss_pred cccccccccccccchhhhHhHHHHHhhcc
Q psy3432 426 KEEMFLESLDELDDSRREVDELVQEYCAA 454 (695)
Q Consensus 426 ~eGmee~~~~eF~Ea~~~l~~li~eY~~~ 454 (695)
+||||| +||+||++++++++++|++.
T Consensus 354 ~eG~ee---~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 354 QVGMEQ---GDFTEALESISNLIDEYDYL 379 (379)
T ss_pred CCCCcH---HHHHHHHHHHHHHHHHHHhC
Confidence 999998 99999999999999999863
No 13
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=1.8e-80 Score=688.42 Aligned_cols=370 Identities=27% Similarity=0.490 Sum_probs=337.7
Q ss_pred CCcccccccCCCCCCccceeEEecCCCceeeeeeccCC--CCCCCCCceeecCCCCCCCCCccccccccchhhhHHhhhh
Q psy3432 18 GGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPY--AKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDII 95 (695)
Q Consensus 18 ~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~--~~lf~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~ 95 (695)
.+.+++||+|..+++|+|||||||+||+||++++++.+ +++|+|++++.++ +|+|||||+
T Consensus 38 ~~~~~~ff~e~~~~~~~pRav~iD~ep~vi~~i~~~~~~~~~~f~~~~~~~~~--~gagnnwa~---------------- 99 (446)
T cd02189 38 RDAQERFFSEKSDGQPIARSVLVDMEPKVIESTLSKSSGGTWKYDKKNVICQQ--SGSGNNWAY---------------- 99 (446)
T ss_pred ccccceeecccCCCCcCCceeecCCCchHHHHhhcCCCCcccccCchheeecC--CCCccchhc----------------
Confidence 46889999999999999999999999999999998764 4799999999999 999999999
Q ss_pred hhhccCCCcccccCCCceeeccCCCCCCCCCCccc-chhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHH
Q psy3432 96 DREADGSDSLELYNPENVYLSKDGGGAGNNWASGY-SQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSY 174 (695)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~Gy-~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~ 174 (695)
|| ..|+++.|+++|+||+++|+||+++||+++||+|||||||+|++
T Consensus 100 ---------------------------------Gy~~~g~~~~~~~~d~ir~~~E~cd~~~gf~~~~sl~GGtGSG~gs~ 146 (446)
T cd02189 100 ---------------------------------GYYVHGPQIKEDILDLIRKEVEKCDSFEGFLVLHSLAGGTGSGLGSR 146 (446)
T ss_pred ---------------------------------cccccchhhHHHHHHHHHHHHHhCCCccceEEEecCCCCcchHHHHH
Confidence 74 46999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHH
Q psy3432 175 LLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLV 254 (695)
Q Consensus 175 lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~i 254 (695)
|+|+|+|+||++.+.+++|+|+.. +|+++||||++|+|++|.+++|+++++||++|.++|.+.++++.++|.++|++|
T Consensus 147 l~e~l~d~y~~~~~~~~~v~P~~~--~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~I 224 (446)
T cd02189 147 VTELLRDEYPESLLLNIVVWPYTT--GEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVI 224 (446)
T ss_pred HHHHHHHhcCccceeeeeccCCCC--CcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 999999999999999999999763 899999999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccccccc-C-------CCCccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhc---CCC
Q psy3432 255 STIMAVSTSTLRY-P-------SYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLL---QPK 323 (695)
Q Consensus 255 a~~i~~~t~~~Rf-~-------g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~---~~~ 323 (695)
|+.|+++|++.|| + |..+.|+.+++++|||||++||++++++|+++... ..+++++|.+|+++++ .+.
T Consensus 225 a~~l~~~~~~~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~-~~~~~~~~~~l~~~l~qm~~~~ 303 (446)
T cd02189 225 AHQLASLLQPSLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKS-LAFSTFSWSALLKRLHQMLIAG 303 (446)
T ss_pred HHHHHHHhhHhhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccc-cccccCCHHHHHHHHHHhhccc
Confidence 9999999999986 6 34689999999999999999999999999998653 4678899999999987 566
Q ss_pred CCcccc-------------------CCCCCCccchhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEee
Q psy3432 324 NMMVST-------------------APDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSK 384 (695)
Q Consensus 324 n~l~~~-------------------~~~~~~~~~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~ 384 (695)
+++..+ ++. .++||++++++||++...++.. +++ +...|++|+|+++++++|.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ls~~~i~RG~~~~~~~~~---~~~--~~~~f~~W~p~~~~~~~~~ 375 (446)
T cd02189 304 SFMEEGIDWTVRPEGSAASLLSGNKSTH---FNKSLANLLILRGKDVTSADER---KFR--DPLLYVNWSPSPVRFSISS 375 (446)
T ss_pred cccccccccccccccccccccccccCCc---ccceeeeeeeeeCCCchHHHHH---HHh--ccCcCCCcCCCCEeeeecC
Confidence 666653 333 4899999999999987777763 344 5589999999999999999
Q ss_pred cCCCcCCCCceeEeeeccchhhHHhhh------hhccCccccccccccccccccccccccchhhhHhHHHHHhhc
Q psy3432 385 KSPYVPTSHRVSGLMLANHTNISSGIS------WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCA 453 (695)
Q Consensus 385 ~~p~~~~~~~~s~~~lsNstsI~~~~~------~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~ 453 (695)
++|.. .+.++++++++|+|+|..+|+ ++||+||||||||+++|||| +||.||++.+++++++|+.
T Consensus 376 ~~~~~-~~~~~s~~~l~Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~~~Gmee---~ef~eA~~~l~~li~~Y~~ 446 (446)
T cd02189 376 HKRSF-SKYEKSVTLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYEKYGLEE---EDFLDAFATLEQIIASYKN 446 (446)
T ss_pred CCCCc-CCcceeEEEEeCCchHHHHHHHHHHHHHHHHhcCcchhhhhccCCcH---HHHHHHHHHHHHHHHHhcC
Confidence 87743 357899999999999999999 89999999999999999998 9999999999999999963
No 14
>KOG1376|consensus
Probab=100.00 E-value=9.6e-77 Score=607.60 Aligned_cols=354 Identities=31% Similarity=0.533 Sum_probs=334.3
Q ss_pred CCcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccccchhhhHHhhhhhh
Q psy3432 18 GGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDR 97 (695)
Q Consensus 18 ~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~ 97 (695)
++.+++||.|+..++++||++|||+||. ||++++|+|+++|+|++++.|+ ++|+||+|+
T Consensus 46 ~~~~~tff~~t~~~k~~pr~~fVDlEPt-idevrtG~y~~lfHPeqlitGk--edAannyAr------------------ 104 (407)
T KOG1376|consen 46 DDSFNTFFSETGAGKHVPRAVFVDLEPT-IDEVRTGTYRQLFHPEQLITGK--EDAANNYAR------------------ 104 (407)
T ss_pred CcccceeecccccccccceeEEEeccCc-cchhcccchhhccCchhccCcc--hHhhhhHHh------------------
Confidence 5589999999999999999999999999 9999999999999999999999 999999999
Q ss_pred hccCCCcccccCCCceeeccCCCCCCCCCCcc-cchhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHH
Q psy3432 98 EADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLL 176 (695)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~ll 176 (695)
| |+.|+|++|..+++||+.++.|..+|||++|||+|||||||+++.++
T Consensus 105 -------------------------------ghyt~g~e~id~~~~~Ir~~Ad~C~glqgflvFhs~GGgtGsg~~s~lm 153 (407)
T KOG1376|consen 105 -------------------------------GHYTIGKEIIDLVLDRIRKLADLCTGLQGFLVFHSFGGGTGSGLGSLLM 153 (407)
T ss_pred -------------------------------hhhhcchhhhHHHHHHHHHHHHhhccccceEEEEeccCCCcCCccchhh
Confidence 9 88999999999999999999999999999999999999999999999
Q ss_pred HHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHH
Q psy3432 177 EHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVST 256 (695)
Q Consensus 177 e~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~ 256 (695)
|.|..+|+||..+.++|+|.+ +.++.+++|||++|+.+...+++|+++++||++.+++|.+++.+..|+|.++|++|++
T Consensus 154 erls~~~GKkskl~fsiypap-qvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~q 232 (407)
T KOG1376|consen 154 ERLSVDYGKKSKLEFSIYPAP-QVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQ 232 (407)
T ss_pred hhhhhhhhhccccccccccCc-cccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHh
Confidence 999999999999999999999 7899999999999999999999999999999999999999999999999999999999
Q ss_pred hhhccccccccCCCCccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhcCCCCCccccCCCCCCc
Q psy3432 257 IMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQ 336 (695)
Q Consensus 257 ~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~~~~ 336 (695)
+++++|+++||+|.+|+||.++++|||||| + |+|+.+..+ ..+++.++.+++..+|++.|+|++|+|.+
T Consensus 233 VvSsitaSlrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~-a~he~~sv~~it~~~fe~~~qmvkcDP~~--- 301 (407)
T KOG1376|consen 233 VVSSITASLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEK-AYHEQLSVAEITNACFEPANQMVKCDPRH--- 301 (407)
T ss_pred hhcccccccccCCcccccHHHHHhhCCCCc----c---cccchhhcc-cchhhhhHHhhccccccccccccccCCcc---
Confidence 999999999999999999999999999999 2 999998765 67889999999999999999999999986
Q ss_pred cchhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCCCCceeEeeeccchhhHHhhh-----
Q psy3432 337 HCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSGIS----- 411 (695)
Q Consensus 337 ~~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~~~~~s~~~lsNstsI~~~~~----- 411 (695)
|||+|||+++||++.|++++.++..+|.+++++||+-. ++--.+..-.+++|||+|+|+|++.|.
T Consensus 302 gkyma~cllyrgdvvP~~v~~A~a~ikt~rt~qfvd~~----------v~gg~lakv~Ravcmlsnttai~eawarld~k 371 (407)
T KOG1376|consen 302 GKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDTV----------VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHK 371 (407)
T ss_pred chHHHHHHhccCCcCcccchHHHHhhhhccccccceee----------ccCcchhhhceeeEecCCCcHHHHHHhhcchh
Confidence 99999999999999999999999999999999999821 111011123678999999999999999
Q ss_pred -hhccCccccccccccccccccccccccchhhhHhHHH
Q psy3432 412 -WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELV 448 (695)
Q Consensus 412 -~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li 448 (695)
|.||+||||||||++||||| +||.||++++..|.
T Consensus 372 fdLmyakrafVhwyvgegmee---gef~ea~ed~a~le 406 (407)
T KOG1376|consen 372 FDLMYAKRAFVHWYVGEGMEE---GEFSEAREDLAALE 406 (407)
T ss_pred hhhhhcchheeeeccCCCccc---cchhhhhhhHHhhc
Confidence 89999999999999999998 99999999998764
No 15
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=4.6e-75 Score=636.75 Aligned_cols=353 Identities=37% Similarity=0.699 Sum_probs=331.4
Q ss_pred EEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccccchhhhHHhhhhhhhccCCCcccccCCCceeecc
Q psy3432 38 VLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSK 117 (695)
Q Consensus 38 v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (695)
|+||+||+||+.++.++.+++|++++++.++ +|+|||||+
T Consensus 23 i~iD~e~~~i~~i~~~~~~~~~~~~~~~~~~--~g~gnn~a~-------------------------------------- 62 (382)
T cd06059 23 ILVDLDPRVINEILQGQLSKLFDPNQLVNGK--EGSGNNWAR-------------------------------------- 62 (382)
T ss_pred HcccCCcchhhhhhcccccccCCcccEEecc--ccccccccc--------------------------------------
Confidence 9999999999999998888899999999999 999999999
Q ss_pred CCCCCCCCCCccc-chhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecC
Q psy3432 118 DGGGAGNNWASGY-SQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPN 196 (695)
Q Consensus 118 ~~~g~g~~~~~Gy-~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~ 196 (695)
|| ..|++..|+++|+||+++|+||.+|||+++||+|||||||+|++++|.|+|+||++.+++++|+|+
T Consensus 63 -----------G~~~~g~~~~e~~~d~ir~~~E~cD~l~gf~i~~sl~GGTGSG~gs~l~e~l~d~y~~~~i~~~~v~P~ 131 (382)
T cd06059 63 -----------GYYTIGPELIDEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPS 131 (382)
T ss_pred -----------cccccCHHHHHHHHHHHHHHHHhCCCcCceEEEEecCCCcchhHHHHHHHHHHHhcCccceEeEEEecc
Confidence 74 468899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHHhhhccccccccCCCCccccc
Q psy3432 197 QDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLI 276 (695)
Q Consensus 197 ~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~ 276 (695)
. ..+++++++||++|++++|.+++|+++++||++|.++|.+.+.+..++|.++|++||++|+++|.++||||..+.|+.
T Consensus 132 ~-~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r~~g~~n~d~~ 210 (382)
T cd06059 132 P-QGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLRFPGYLNFDLR 210 (382)
T ss_pred C-ccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhcccccccccCCCcCCCHH
Confidence 8 334589999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred cccCCcccCCCccccccccccccccccccccccccHHHHHHhhcCCCCCccccCCCCCCccchhhhhhhhhCCCChHhHH
Q psy3432 277 GLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVH 356 (695)
Q Consensus 277 ~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~~~~~~~ls~~~~~RG~~~~~~v~ 356 (695)
+++++|||||++||++++++|+++... ..+++.++.+++++++.+.++++.+++.. ++||++++++||++...++.
T Consensus 211 ~i~~~LvP~p~~~fl~~s~~P~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~la~~~~~RG~~~~~~v~ 286 (382)
T cd06059 211 KLATNLVPFPRLHFLTPSFAPLISYDS-QTTEKLNLLQIINELFNNDNSFFSCDPTK---GRYLAAALIFRGDVFQSEIQ 286 (382)
T ss_pred HHhhhcCCCCCceeccccccccccchh-cccccCCHHHHHHHHhhcccceeecCCCc---chHHHHHHHHhCCCCHHHHH
Confidence 999999999999999999999998643 45678899999999999999999988764 99999999999999999999
Q ss_pred HHHHHHhhhcccCceecCCCCceEEEeecCCCcCCCCceeEeeeccchhhHHhhh------hhccCcccccccccccccc
Q psy3432 357 KSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSGIS------WQLPKREAFLEQFRKEEMF 430 (695)
Q Consensus 357 ~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~~~~~s~~~lsNstsI~~~~~------~~m~~krAflH~Y~~eGme 430 (695)
+.+.+++.+.... +|+|+++++++|+++|. .+.++++++|+|+|+|.++|+ ++||+||||||||+++|||
T Consensus 287 ~~~~~~~~~~~~~--~w~p~~~~~~~~~~~~~--~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~G~e 362 (382)
T cd06059 287 EAINKLKNKLNIQ--SWIPDGFKVSNCKKPPR--AELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEGMD 362 (382)
T ss_pred HHHHHHHHhcccc--cCCCCcEEEEecCCCCC--cCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCcCCc
Confidence 9999998774444 89999999999999884 267899999999999999999 9999999999999999999
Q ss_pred ccccccccchhhhHhHHHHHhhc
Q psy3432 431 LESLDELDDSRREVDELVQEYCA 453 (695)
Q Consensus 431 e~~~~eF~Ea~~~l~~li~eY~~ 453 (695)
| +||.||++++++++++|.+
T Consensus 363 e---~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 363 E---MEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred h---HHHHHHHHHHHHHHHHhcC
Confidence 8 9999999999999999974
No 16
>KOG1375|consensus
Probab=100.00 E-value=6.1e-63 Score=509.25 Aligned_cols=335 Identities=33% Similarity=0.647 Sum_probs=315.1
Q ss_pred CCcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccccchhhhHHhhhhhh
Q psy3432 18 GGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDR 97 (695)
Q Consensus 18 ~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~ 97 (695)
..+++++|.+...++|+||+|+|||||.+++.++.++++++|+|+| |+ +| .
T Consensus 8 ~~~i~~~~~~~~~~~~~~ravlvdlepgs~dsv~~~~~g~~frp~~---~~--sg------~------------------ 58 (369)
T KOG1375|consen 8 LERINVYYNEAGGGKYVPRAVLVDLEPGSMDSVRSGPFGQIFRPDN---GQ--SG------K------------------ 58 (369)
T ss_pred eeeeeeeecccccccccchhheeeccCccccccccCccceeccCcC---Cc--cC------c------------------
Confidence 3578999999999999999999999999999999999999999999 55 43 2
Q ss_pred hccCCCcccccCCCceeeccCCCCCCCCCCcc-cchhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHH
Q psy3432 98 EADGSDSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLL 176 (695)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~ll 176 (695)
| |+.|.++.|. .||++|||+++||+|||||||+|++++
T Consensus 59 -------------------------------ghy~~ga~~~ds----------~~dclqgfql~hs~gggtGsg~gt~l~ 97 (369)
T KOG1375|consen 59 -------------------------------GHYTEGAELVDS----------SCDCLQGFQLTHSLGGGTGSGMGTLLI 97 (369)
T ss_pred -------------------------------cceeeeeeehhc----------ccchhhcceeeeeccCccccCcchhhH
Confidence 3 6677777666 899999999999999999999999999
Q ss_pred HHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHH
Q psy3432 177 EHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVST 256 (695)
Q Consensus 177 e~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~ 256 (695)
..|+++||++.+.+++|.|++ + ++++++|||+.|++++|.+++|.++++||++|+++|.+.+++..|+
T Consensus 98 ~k~~ee~~d~i~~~~sv~ps~-k-sd~vvepyna~ls~~ql~en~~et~cidNeal~dic~~~lkl~~~~---------- 165 (369)
T KOG1375|consen 98 SKIREEFPDRIMNTFSVVPSP-K-SDTVVEPYNATLSVHQLVENADETFCIDNEALYDICFRTLKLKTPS---------- 165 (369)
T ss_pred HHHHHhccchhcccccccCcc-c-ccceecccccccchhhhhcCCCcccccccHHHHHHHhhhhcccCCC----------
Confidence 999999999999999999999 4 9999999999999999999999999999999999999999998887
Q ss_pred hhhccccccccCCCCccccccccCCcccCCCccccccccccccccccccccccccHHHHHHhhcCCCCCccccCCCCCCc
Q psy3432 257 IMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQ 336 (695)
Q Consensus 257 ~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~~~~ 336 (695)
++|.++||+|.+|.|+.++..|++|+|++||+.+.++|++.... .+++..+++++++++|+.+|+|..|+
T Consensus 166 ---g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~-~q~~a~tv~eltqq~fdaknmm~a~d------ 235 (369)
T KOG1375|consen 166 ---GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRALTVPELTQQMFDAKNMMTACD------ 235 (369)
T ss_pred ---CceeecccccccchhhhhhhhccCCCcchhhccccccccccccc-cccccccccccccccccCcchhhhhh------
Confidence 88999999999999999999999999999999999999998764 67789999999999999999999874
Q ss_pred cchhhhhhhhhCCCChHhHHHHHHHHhhhcccCceecCCCCceEEEeecCCCcCCCCceeEeeeccchhhHHhhh-----
Q psy3432 337 HCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSGIS----- 411 (695)
Q Consensus 337 ~~~ls~~~~~RG~~~~~~v~~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~~~~~s~~~lsNstsI~~~~~----- 411 (695)
||+++.++|| +.+++++.+..++.+.+..|++|+|+++|+++|..|| .+.+++++.++|+|+|...|.
T Consensus 236 --yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdipp---~glkms~tf~~n~taiqelf~~i~eq 308 (369)
T KOG1375|consen 236 --YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIPP---GGLKMSSTFIGNNTAIQELFRCISEQ 308 (369)
T ss_pred --hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCCC---ccccccccccccchhHHHHHHHhhhH
Confidence 8999999999 8889999999999999999999999999999999998 578999999999999999998
Q ss_pred -hhccCccccccccccccccccccccccchhhhHhHHHHHhhcc
Q psy3432 412 -WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAA 454 (695)
Q Consensus 412 -~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~~ 454 (695)
..||+||||||||.+||||| +||+||..+++++|.+|+..
T Consensus 309 ftamfrrkAflhwy~~egMde---~EFtEAes~~ndLi~eyqQy 349 (369)
T KOG1375|consen 309 FTAMFRRKAFLHWYTGEGMDE---MEFTEAESNMNDLVSEYQQY 349 (369)
T ss_pred HHHHHHhhhhhhhcccccchh---hhhhHHHHHHHHHHHHHHHh
Confidence 67999999999999999998 99999999999999999988
No 17
>COG5023 Tubulin [Cytoskeleton]
Probab=100.00 E-value=3.7e-57 Score=463.94 Aligned_cols=239 Identities=33% Similarity=0.583 Sum_probs=215.3
Q ss_pred hhccCccccccccccccccccccccccchhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCC
Q psy3432 412 WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTP 491 (695)
Q Consensus 412 ~~m~~krAflH~Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aP 491 (695)
..++...|-.|...+- +.-=..+++++|+||+..+++.|+++||||+||+||++|.+||||||||||+++||+|
T Consensus 199 tf~~DNeal~di~~~~------L~i~~P~y~~lN~LIs~VmSsvTtslRfpG~ln~dl~~~~~nLVP~PrlHF~l~sytP 272 (443)
T COG5023 199 TFVVDNEALYDICRRN------LRIQNPSYDDLNQLISTVMSSVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTP 272 (443)
T ss_pred eEEechHHHHHHHHHh------cCCCCCChHHHHHHHHHHHHhhhheeecCccccchHHHHHhcCCCCCcccccccccCc
Confidence 4466666666655531 2334588999999999999999999999999999999999999999999999999999
Q ss_pred cchhhhhhheecchhhHHHHhhccccchhhhhcccccHHHHHHHhcCCCCceeeeCCCCCCCCeeeeEeeeccccCCchh
Q psy3432 492 LTAEHEVASIRKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQ 571 (695)
Q Consensus 492 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~yls~~~~~RG~v~~~~ 571 (695)
++.... .. .++.++.||+++||+|+|+|++|+|+ .|+||++|++|||+++|+|
T Consensus 273 ~~s~~~-~~-----------------------~~~~sv~evt~~~f~p~N~mv~~dpr---~g~y~~~~~l~rG~v~~~d 325 (443)
T COG5023 273 FTSDGS-AA-----------------------HEKNSVSEVTNQLFDPKNQMVSCDPR---KGRYMAVCLLFRGDVDPRD 325 (443)
T ss_pred ccchhh-HH-----------------------HhcccHHHHHHHHhCcccceeeecCC---CCeeeehhHHHhcCCCHHH
Confidence 987642 22 24568899999999999999999998 6999999999999999999
Q ss_pred HHHHHHHHHHhcccCcccCCCCceeEEeccCCCCCCCCCceEEEeecccchHHHHHHHHh-----cccccccccccccCC
Q psy3432 572 VHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCL-----TGKREAFLEQFRKEE 646 (695)
Q Consensus 572 v~~~i~~ik~~~~~~fv~W~p~~~kv~~~~~~p~~p~~~~~s~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~~eG 646 (695)
|++++.++|+++.++||+|+|++||+++|++||..+...++|+|||+|+|+|.++|+|+. ||+||||||||++||
T Consensus 326 V~~a~~~v~~k~~~~Fv~W~P~~~~vai~~~~P~~~~~~~~s~~~lsNtTsi~e~fkr~~~qFd~mf~krAFlhwY~~eg 405 (443)
T COG5023 326 VSRAVTRVQSKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRAFLHWYVGEG 405 (443)
T ss_pred HHHHHHHHHhcCcccccccCCcceeeeeeccCCcccccceeeeEeecCcHHHHHHHHHhhhHHHHHHHhhHHHHHHhhcc
Confidence 999999999999999999999999999999999877888999999999999999999995 689999999999999
Q ss_pred cCccchhhHHHHHHHHHHHHHHHHhccCCCccCcCCCchHH
Q psy3432 647 MFLESLDELDDSRREVDELVQEYCAATRPDYLSWGGAKSEE 687 (695)
Q Consensus 647 m~~~~~~ef~ea~e~v~~li~eY~~~~~~~~~~~~~~~~~~ 687 (695)
|+ ++||+||||+|++|++||++++++.|++-++ ++||
T Consensus 406 me---e~EFsEare~~~~L~~eY~~~~~~s~~~~~~-~~~~ 442 (443)
T COG5023 406 ME---EGEFSEAREDVADLEEEYEAAEQDSYLDDEE-DEEE 442 (443)
T ss_pred Cc---ccchhhHHHHHHHHHHHHHHhccccccchhh-hhcc
Confidence 99 5999999999999999999999999998776 5544
No 18
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=100.00 E-value=3.4e-54 Score=463.73 Aligned_cols=305 Identities=44% Similarity=0.773 Sum_probs=279.3
Q ss_pred EEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccccchhhhHHhhhhhhhccCCCcccccCCCceeecc
Q psy3432 38 VLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSK 117 (695)
Q Consensus 38 v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (695)
|+||+||++++.+..++.+.+|++++.+.+. .|+||||++
T Consensus 23 v~idtd~~~l~~~~~~~~~~~~~~~~~~~~~--~gag~n~~~-------------------------------------- 62 (328)
T cd00286 23 VLVDTEPGVIDETLSGPYRLLFCIGQLITHG--GGAGNNWAF-------------------------------------- 62 (328)
T ss_pred heecCCHHHHHHHhCcccccccCccceeecC--CCCCCCcce--------------------------------------
Confidence 9999999999999888888889999999988 899999999
Q ss_pred CCCCCCCCCCccc-chhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecC
Q psy3432 118 DGGGAGNNWASGY-SQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPN 196 (695)
Q Consensus 118 ~~~g~g~~~~~Gy-~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~ 196 (695)
|| ..|.+..|+++|+||+++|+||++|||+++||+|||||||+|++++|+|+|+||++.+++++|+|+
T Consensus 63 -----------G~~~~~~~~~e~i~~~ir~~~E~cD~~~gf~i~~slgGGTGsG~~~~i~e~l~d~y~~~~~~~~~v~P~ 131 (328)
T cd00286 63 -----------GHETAGEEYQEEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPG 131 (328)
T ss_pred -----------eeccccHHHHHHHHHHHHHHHHhCCCccceEEEeecCCCccccHHHHHHHHHHHHcCccceeEEEecCC
Confidence 74 357779999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHHhhhccccccccCCCCccccc
Q psy3432 197 QDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLI 276 (695)
Q Consensus 197 ~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~ 276 (695)
.. .++++++||++|++++|.+++|+++++||++|.++|.+.+.+..+.|.++|++||++|+++|.++||+|..|.|+.
T Consensus 132 ~~--~~~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r~~g~~n~d~~ 209 (328)
T cd00286 132 PD--EGVIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLRFDGSLNVDLR 209 (328)
T ss_pred CC--CcchhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhccccccccccCccccchHH
Confidence 83 2369999999999999999999999999999999999988888899999999999999999999999999999999
Q ss_pred cccCCcccCCCccccccccccccccccccccccccHHHHHHhhcCCCCCccccCCCCCCccchhhhhhhhhCCCChHhHH
Q psy3432 277 GLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVH 356 (695)
Q Consensus 277 ~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~~~~~~~ls~~~~~RG~~~~~~v~ 356 (695)
++.++|+|+|++||++++++|+..... ..+.+.++.+++++++++.++++.+++.. ++++++++++||+.+..++.
T Consensus 210 ~~~~~l~p~p~~~~~~~~~~p~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~rG~~~~~~v~ 285 (328)
T cd00286 210 ELSENLVPFPRLHFLMVGYAPLDSEGS-ATPTTLRVAELVRQALRSKNQMVVCDPTH---GGYIAALLLVRGPVSPSEVR 285 (328)
T ss_pred HHhhhcCCCCCceeeccccCccccccc-cccccCCHHHHHHHHhCCCCeeeccCCCc---cchHHHHHHHhCCCChHHHH
Confidence 999999999999999999999987542 35667889999999999999998877654 89999999999999999999
Q ss_pred HHHHHHhhhcccCceecCCCCceEEEeecCCCcCCCCceeEeeeccc
Q psy3432 357 KSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANH 403 (695)
Q Consensus 357 ~~~~~lk~~~~~~fv~W~p~~~~v~~~~~~p~~~~~~~~s~~~lsNs 403 (695)
+.+..++.+.... +|+|+++++++|..+|. .+.+.++++|+|+
T Consensus 286 ~~~~~l~~~~~~~--~w~~~~~~~~~~~~~~~--~~~~~~~~~l~Ns 328 (328)
T cd00286 286 EGIARVAPRTSHL--SWSPPGIKVGVSPTPPA--SEHKVSALLLSNS 328 (328)
T ss_pred HHHHHHHHhCCcC--CcCCCCEeEeecCCCCC--CCcCeEEEEeccC
Confidence 9999998775444 89999999999988773 1568899999996
No 19
>PLN00222 tubulin gamma chain; Provisional
Probab=100.00 E-value=1.2e-44 Score=401.42 Aligned_cols=224 Identities=63% Similarity=0.976 Sum_probs=200.6
Q ss_pred chhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhccccc
Q psy3432 439 DSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKN 518 (695)
Q Consensus 439 Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (695)
.+++++|++|++-.+..|+++||||.+|+||++|++||||||++||++++|+|+....+...
T Consensus 223 p~~~dlN~lIA~~ls~~T~s~Rfpg~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~~~~------------------ 284 (454)
T PLN00222 223 PTFAQTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANV------------------ 284 (454)
T ss_pred CCHHHHHHHhccccCCcccccCCCCccCCCHHHHhhhcCCCCCceeeccccccccccccccc------------------
Confidence 68999999999999999999999999999999999999999999999999999964321111
Q ss_pred hhhhhcccccHHHHHHHhcCCCCceeeeCCCC--CCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCcee
Q psy3432 519 MMVASIRKTTVLDVMRRLLQPKNMMVSTAPDR--MSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQ 596 (695)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~--~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~k 596 (695)
.+++++.|+++++|+++++|++|+|+. ..+|+|||+++++||++++++|.+++.+++++++++|++|+|+++|
T Consensus 285 -----~~~~s~~~~~~~l~~~~n~~~~~~~~~~~~~~~k~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~fv~W~p~~~k 359 (454)
T PLN00222 285 -----IRKTTVLDVMRRLLQTKNIMVSSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQ 359 (454)
T ss_pred -----eeeCCHHHHHHHHhcccCceeecCCccccccccchHHHHHHHhCCCCHHHHHHHHHHHhhhCCccccccCCCCEe
Confidence 233578888999999999999998861 0129999999999999999999999999999999999999999999
Q ss_pred EEeccCCCCCCCCCceEEEeecccchHHHHHHHHh-----cccccccccccccCCcCcc-chhhHHHHHHHHHHHHHHHH
Q psy3432 597 VALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCL-----TGKREAFLEQFRKEEMFLE-SLDELDDSRREVDELVQEYC 670 (695)
Q Consensus 597 v~~~~~~p~~p~~~~~s~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~~eGm~~~-~~~ef~ea~e~v~~li~eY~ 670 (695)
+++|+++|..+.+.+.++++|+|+|+|.++|+++. ||+||||||||++|||++| .++||+||+++|++|++||+
T Consensus 360 ~~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~~~G~~~d~ee~eF~ea~~~l~~li~~Y~ 439 (454)
T PLN00222 360 VALSRKSPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYK 439 (454)
T ss_pred eeeccCCCCCCCCCceEEEEEeCCHHHHHHHHHHHHHHHHHHhhCccceeecCCCcccCcchhHHHHHHHHHHHHHHHHH
Confidence 99999998654567899999999999999999996 5899999999999999532 16999999999999999999
Q ss_pred hccCCCccCcCCCch
Q psy3432 671 AATRPDYLSWGGAKS 685 (695)
Q Consensus 671 ~~~~~~~~~~~~~~~ 685 (695)
+++..+|++|+|||+
T Consensus 440 ~~~~~~y~~~~~~~~ 454 (454)
T PLN00222 440 ACESPDYIKWGMEDP 454 (454)
T ss_pred HHhcccccccccCCC
Confidence 999999999999985
No 20
>PTZ00010 tubulin beta chain; Provisional
Probab=100.00 E-value=2.3e-42 Score=383.47 Aligned_cols=205 Identities=25% Similarity=0.475 Sum_probs=188.4
Q ss_pred chhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhccccc
Q psy3432 439 DSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKN 518 (695)
Q Consensus 439 Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (695)
.+++++|++|++..+..|.++||||++|+||++|.+||||||++||++++|+|+..... ...
T Consensus 220 p~~~~lN~lIaq~is~~t~~~Rfpg~ln~dl~~l~tnLvP~P~l~fl~~s~~P~~~~~~-~~~----------------- 281 (445)
T PTZ00010 220 PTYGDLNHLVSAVMSGVTCCLRFPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGS-QQY----------------- 281 (445)
T ss_pred CCHHHHHHHHHhhccccccceecCCcccccHHHHHHHHhcCCCceeeecccCccccccc-ccc-----------------
Confidence 68999999999999999999999999999999999999999999999999999975431 111
Q ss_pred hhhhhcccccHHHHHHHhcCCCCceeeeCCCCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeEE
Q psy3432 519 MMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVA 598 (695)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv~ 598 (695)
++.++.++++++|+++++|++|+|+ +|+|||+++++||+++++++.+++.+++++++++|++|+|++|+++
T Consensus 282 ------~~~s~~~l~~~l~~~~n~~~~~~~~---~~k~la~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~ 352 (445)
T PTZ00010 282 ------RGLSVPELTQQMFDAKNMMCAADPR---HGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSS 352 (445)
T ss_pred ------ccCCHHHHHHhHhcccceEeecCCC---cchhHHHHHHHcCCCCHHHHHHHHHHHHhhCCccCccccCCCEEEe
Confidence 2357889999999999999999997 6999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCceEEEeecccchHHHHHHHHh-----cccccccccccccCCcCccchhhHHHHHHHHHHHHHHHHhcc
Q psy3432 599 LSKKSPYVPTSHRVSGLMLANHTNISSLFDRCL-----TGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAAT 673 (695)
Q Consensus 599 ~~~~~p~~p~~~~~s~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li~eY~~~~ 673 (695)
+|+++| ...+.+++||+|+|+|.++|+++. ||+||||||||++|||+ ++||.||+++|++|++||++++
T Consensus 353 ~~~~~~---~~~~~s~~~lsNstsi~~~~~~i~~~f~~m~~rrAflh~Y~~eGme---e~ef~EA~~~l~~li~~Y~~~~ 426 (445)
T PTZ00010 353 VCDIPP---KGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGMD---EMEFTEAESNMNDLVSEYQQYQ 426 (445)
T ss_pred ecCcCC---cCccceEEEecCCcHHHHHHHHHHHHHHHHHhcCchhhhhhccCCc---HHHHHHHHHHHHHHHHHHHHHh
Confidence 999986 356899999999999999999996 58999999999999999 5999999999999999999976
Q ss_pred CCC
Q psy3432 674 RPD 676 (695)
Q Consensus 674 ~~~ 676 (695)
..-
T Consensus 427 ~~~ 429 (445)
T PTZ00010 427 DAT 429 (445)
T ss_pred hcc
Confidence 555
No 21
>PLN00221 tubulin alpha chain; Provisional
Probab=100.00 E-value=3.9e-42 Score=381.36 Aligned_cols=218 Identities=21% Similarity=0.445 Sum_probs=197.9
Q ss_pred chhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhccccc
Q psy3432 439 DSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKN 518 (695)
Q Consensus 439 Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (695)
.+++++|++|++-.+..|.++||||++|+||+++++|||||||+|||+++|+|++.... ..
T Consensus 222 p~~~dlN~lIa~~is~~T~s~RF~g~ln~dl~~l~~nLvP~P~lhfl~~s~~P~~~~~~-~~------------------ 282 (450)
T PLN00221 222 PTYTNLNRLISQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISAEK-AY------------------ 282 (450)
T ss_pred CCHHHHHHHHhhhcccccccccccccccCCHHHHHHhcCCCCCceeeccccCccccccc-cc------------------
Confidence 68999999999999999999999999999999999999999999999999999975432 11
Q ss_pred hhhhhcccccHHHHHHHhcCCCCceeeeCCCCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeEE
Q psy3432 519 MMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVA 598 (695)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv~ 598 (695)
.++.++.++++++|+++++|++|+|+ +|+|||+++++||+++++++.+++.+++.++.++|++|+|++++++
T Consensus 283 -----~~~~s~~~l~~~l~~~~~~l~~~~~~---~~kyla~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~ 354 (450)
T PLN00221 283 -----HEQLSVAEITNSAFEPASMMAKCDPR---HGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCG 354 (450)
T ss_pred -----cccCCHHHHHHHHhcccceeeecCCC---cchHHHHHHHHcCCCCHHHHHHHHHHHHhcCCccccccCCCCEeee
Confidence 12357899999999999999999997 6999999999999999999999999999999999999999999999
Q ss_pred eccCCCC-CCC----CCceEEEeecccchHHHHHHHHh-----cccccccccccccCCcCccchhhHHHHHHHHHHHHHH
Q psy3432 599 LSKKSPY-VPT----SHRVSGLMLANHTNISSLFDRCL-----TGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQE 668 (695)
Q Consensus 599 ~~~~~p~-~p~----~~~~s~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li~e 668 (695)
+|+++|. +|. +.+.++++|+|+|+|.++|++++ ||+||||||||++|||+ ++||+||+++|++||++
T Consensus 355 i~~~~~~~~~~~~~~~~~~s~~~l~NstsI~~~f~~i~~~f~~mf~rkAflh~Y~~eGme---e~eF~EA~~~l~~li~~ 431 (450)
T PLN00221 355 INYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHWYVGEGME---EGEFSEAREDLAALEKD 431 (450)
T ss_pred ecCCCCccCCCccccccceeEEEecCCcHHHHHHHHHHHHHHHHHhhcchhhhhhccCCc---hHHHHHHHHHHHHHHHH
Confidence 9999875 342 34789999999999999999996 58999999999999999 59999999999999999
Q ss_pred HHhccCCCccCcCCCchH
Q psy3432 669 YCAATRPDYLSWGGAKSE 686 (695)
Q Consensus 669 Y~~~~~~~~~~~~~~~~~ 686 (695)
|+++.+..-.+.+||-||
T Consensus 432 Y~~~~~~~~~~~~~~~~~ 449 (450)
T PLN00221 432 YEEVGAESAEGEGDEGEE 449 (450)
T ss_pred HHHHhccccccccccccc
Confidence 999988888887777665
No 22
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=100.00 E-value=4.5e-42 Score=378.91 Aligned_cols=205 Identities=69% Similarity=1.080 Sum_probs=186.9
Q ss_pred chhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhccccc
Q psy3432 439 DSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKN 518 (695)
Q Consensus 439 Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (695)
.++.++|++|++..+..|.++||||.+|+|+++|++||||||++||++++|+|+.........
T Consensus 221 ~~~~~~N~~ia~~ls~~t~~~Rf~g~ln~dl~~i~tnLvP~P~lhfl~~s~~P~~~~~~~~~~----------------- 283 (431)
T cd02188 221 PTFDQINSLVSTVMSASTTTLRYPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASV----------------- 283 (431)
T ss_pred CCHHHHHHHHhccCCCcccceecCCccCCCHHHHHHhcCCCCCceeeccccCccccchhhcce-----------------
Confidence 689999999999999999999999999999999999999999999999999999754300111
Q ss_pred hhhhhcccccHHHHHHHhcCCCCceeeeCC-CCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeE
Q psy3432 519 MMVASIRKTTVLDVMRRLLQPKNMMVSTAP-DRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQV 597 (695)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~-~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv 597 (695)
++.++.++++.+|+|+|+|++|+| + +|||||+++++||++.++++.+++.++|+++.++|++|+|++|++
T Consensus 284 ------~~~s~~~l~~~l~~~~n~m~~~~~~~---~~k~la~~~~~RG~~~~~~~~~~~~~lk~~~~~~f~~W~p~~~~~ 354 (431)
T cd02188 284 ------RKTTVLDVMRRLLQPKNIMVSTATRK---NGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQV 354 (431)
T ss_pred ------ecCCHHHHHHHHhccccceeecCCCc---cchhHHHHHHHcCCCCHHHHHHHHHHHHhhccccCcccCCCCEEE
Confidence 235889999999999999999998 6 699999999999999999999999999999899999999999999
Q ss_pred EeccCCCCCCCCCceEEEeecccchHHHHHHHHh-----cccccccccccccCCcCccchhhHHHHHHHHHHHHHHH
Q psy3432 598 ALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCL-----TGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669 (695)
Q Consensus 598 ~~~~~~p~~p~~~~~s~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li~eY 669 (695)
++|+++|..+.+.+.+++||+|+|+|.++|++++ ||+||||||||++|||++++++||+||+++|++|++||
T Consensus 355 ~~~~~~~~~~~~~~~s~~~lsNst~I~~~f~~i~~kf~~mf~krAflH~Y~~eGme~~~e~eF~ea~~~l~~li~~Y 431 (431)
T cd02188 355 ALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431 (431)
T ss_pred EEeccCCccCCCCceeEEEecCChHHHHHHHHHHHHHHHHHhhCchhhhccCcCccccchhHHHHHHHHHHHHHHhC
Confidence 9999998654456789999999999999999996 58999999999999999555699999999999999998
No 23
>PTZ00335 tubulin alpha chain; Provisional
Probab=100.00 E-value=1.8e-41 Score=375.83 Aligned_cols=208 Identities=23% Similarity=0.476 Sum_probs=189.4
Q ss_pred chhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhccccc
Q psy3432 439 DSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKN 518 (695)
Q Consensus 439 Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (695)
.+++++|++|++-.+..+.++||||++|+|+++|.+||||||++||++++|+|+..... ..
T Consensus 222 ~~~~~~N~~Ia~~is~~t~~~rf~g~~~~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~-~~------------------ 282 (448)
T PTZ00335 222 PTYTNLNRLIAQVISSLTASLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIISAEK-AY------------------ 282 (448)
T ss_pred CCHHHHHHHHHhhhcccccccccccccCCCHHHHhccccCCCCceecccccCccccccc-cc------------------
Confidence 68999999999999999999999999999999999999999999999999999975431 11
Q ss_pred hhhhhcccccHHHHHHHhcCCCCceeeeCCCCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeEE
Q psy3432 519 MMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVA 598 (695)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv~ 598 (695)
.++.++.++++++|+++++|++|+|+ +|+|||+++++||+++++++.+++.++++++.++|++|+|++++++
T Consensus 283 -----~~~~s~~~l~~~l~~~~n~~~~~~~~---~~~~ls~~~~~RG~~~~~~i~~~~~~~~~~~~~~f~~W~p~~~~~~ 354 (448)
T PTZ00335 283 -----HEQLSVAEITNSAFEPANMMAKCDPR---HGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCG 354 (448)
T ss_pred -----ccCCCHHHHHHHhcCccceeEecCCC---ccchHHHHHHHcCCCCHHHHHHHHHHHHhhCCCcCCccCCCCEeee
Confidence 12358889999999999999999997 6999999999999999999999999999999999999999999999
Q ss_pred eccCCCC-CCC----CCceEEEeecccchHHHHHHHHh-----cccccccccccccCCcCccchhhHHHHHHHHHHHHHH
Q psy3432 599 LSKKSPY-VPT----SHRVSGLMLANHTNISSLFDRCL-----TGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQE 668 (695)
Q Consensus 599 ~~~~~p~-~p~----~~~~s~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li~e 668 (695)
+|+++|. +|. +.+.++++|+|+|+|.++|++++ ||+||||||||++|||+ ++||+||+++|++|++|
T Consensus 355 ~~~~~~~~~~~~~~~~~~~s~~~lsNstsI~~~f~~i~~~f~~mf~rkAflh~Y~~eGme---e~eF~EA~~~l~~li~~ 431 (448)
T PTZ00335 355 INYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGME---EGEFSEAREDLAALEKD 431 (448)
T ss_pred ecCCCCccCCCccccccceEEEEecCCcHHHHHHHHHHHHHHHHHhhcchhhhhhccCCc---hHHHHHHHHHHHHHHHH
Confidence 9999886 343 35789999999999999999996 58999999999999999 59999999999999999
Q ss_pred HHhccCCC
Q psy3432 669 YCAATRPD 676 (695)
Q Consensus 669 Y~~~~~~~ 676 (695)
|+++..+.
T Consensus 432 Y~~~~~~~ 439 (448)
T PTZ00335 432 YEEVGAES 439 (448)
T ss_pred HHHHhccc
Confidence 99986443
No 24
>KOG1374|consensus
Probab=100.00 E-value=4e-41 Score=346.39 Aligned_cols=222 Identities=66% Similarity=1.045 Sum_probs=206.1
Q ss_pred cchhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhcccc
Q psy3432 438 DDSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPK 517 (695)
Q Consensus 438 ~Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (695)
..++.++|+|++..+++.|+++||||+||++|..|...|||+|++|||+++|+|++.... .
T Consensus 222 ~ptF~~iNqLvstims~st~t~r~p~Ym~n~l~~l~~~LiP~P~lhfl~~~~tP~~sd~~-~------------------ 282 (448)
T KOG1374|consen 222 NPTFSQINQLVSTIMSASTTTLRYPGYMNNDLIGLYASLIPTPELHFLMTGYTPLTSDNS-L------------------ 282 (448)
T ss_pred CCCHHHHHHHHHHHHhhccccccchhhccCcHHHHHhhcCCCCCeeeeeccCCcccChhh-h------------------
Confidence 367899999999999999999999999999999999999999999999999999986642 1
Q ss_pred chhhhhcccccHHHHHHHhcCCCCceeeeCCCCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeE
Q psy3432 518 NMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQV 597 (695)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv 597 (695)
...+|++++.|++|++++|+|+|++..+....+.+|+++.++++|.++|++|+++++++++++..+|++|.|.+++|
T Consensus 283 ---~~~~rkttvldvmRrLL~pkn~mvs~~~~~~~~~~~~si~n~iqg~vdp~~v~~s~~r~~dr~~a~f~~w~~~si~v 359 (448)
T KOG1374|consen 283 ---ATAVRKTTVLDVMRRLLQPKNMMVSTADDLSGNPCYISILNIIQGEVDPTQVHKSLQRIRDRKLANFIPWGPASIQV 359 (448)
T ss_pred ---hhhhhcchHHHHHHHHhCcchhhhhccccccCCcchHhHHhhhhcccCHHHHHHHHHHHHhcccccCCCCCCHHHHh
Confidence 11357889999999999999999998774333579999999999999999999999999999999999999999999
Q ss_pred EeccCCCCCCCCCceEEEeecccchHHHHHHHHh-----cccccccccccccCCcCccchhhHHHHHHHHHHHHHHHHhc
Q psy3432 598 ALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCL-----TGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAA 672 (695)
Q Consensus 598 ~~~~~~p~~p~~~~~s~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li~eY~~~ 672 (695)
++.+.+|+++..+++||+||+|+|+|..+|++++ +++||||||.|+++|||++.++||+|+|+.|++|++||+++
T Consensus 360 al~k~spy~~~~~~vSglml~N~t~i~~lfe~~~~qydklrk~~AFld~y~k~~if~~~~~efdesr~ivq~lv~eY~a~ 439 (448)
T KOG1374|consen 360 ALSKKSPYVQRAHRVSGLMLANSTSIVSLFERILGQYDKLRKKRAFLDQYRKFDIFEDDLDEFDESREIVQQLVDEYHAA 439 (448)
T ss_pred hhhcCCCccccccceeeeeeccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHHhh
Confidence 9999999998889999999999999999999997 37999999999999999888889999999999999999999
Q ss_pred cCCCccCcC
Q psy3432 673 TRPDYLSWG 681 (695)
Q Consensus 673 ~~~~~~~~~ 681 (695)
++++|++|+
T Consensus 440 ~~~~Y~~~~ 448 (448)
T KOG1374|consen 440 EQPDYLSWG 448 (448)
T ss_pred cCccccccC
Confidence 999999986
No 25
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=100.00 E-value=2.4e-40 Score=366.01 Aligned_cols=201 Identities=27% Similarity=0.505 Sum_probs=185.3
Q ss_pred chhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhccccc
Q psy3432 439 DSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKN 518 (695)
Q Consensus 439 Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (695)
.+++++|++|++-.+..|.++||||++|+||++|++||||||++||++++|+|+..... ..
T Consensus 219 ~~~~~~N~~ia~~is~~t~s~Rfpg~~n~dl~~l~~nLvP~P~~~fl~~s~~P~~~~~~-~~------------------ 279 (425)
T cd02187 219 PTYGDLNHLVSAVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQ------------------ 279 (425)
T ss_pred CCHHHHHHHHhccccccceeeecCCccccCHHHHHHhcCCCCCceecccccCccccccc-cc------------------
Confidence 68999999999999999999999999999999999999999999999999999975421 11
Q ss_pred hhhhhcccccHHHHHHHhcCCCCceeeeCCCCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeEE
Q psy3432 519 MMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVA 598 (695)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv~ 598 (695)
.++.++.++++++|+++++|++|+|+ +|+|||+++++||++.++++.+++.++++++.++|++|+|++++++
T Consensus 280 -----~~~~s~~~l~~~l~~~~~~~~~~~~~---~~~~la~~~~~RG~~~~~~~~~~~~~~~~~~~~~f~~W~p~~~~~~ 351 (425)
T cd02187 280 -----YRALTVPELTQQMFDAKNMMAACDPR---HGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTA 351 (425)
T ss_pred -----cccCCHHHHHHHHhCccCeeeccCCC---cchHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcCCCcCCCCEeee
Confidence 12357889999999999999999987 6999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCceEEEeecccchHHHHHHHHh-----cccccccccccccCCcCccchhhHHHHHHHHHHHHHHHHhc
Q psy3432 599 LSKKSPYVPTSHRVSGLMLANHTNISSLFDRCL-----TGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAA 672 (695)
Q Consensus 599 ~~~~~p~~p~~~~~s~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li~eY~~~ 672 (695)
+|+++| ...+.+++||+|+|+|.++|++++ ||+||||||||++|||+ ++||.||+++|++|++||+++
T Consensus 352 ~~~~~~---~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~kkAflh~Y~~~G~e---e~ef~Ea~~~l~~li~~Y~~~ 424 (425)
T cd02187 352 VCDIPP---RGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD---EMEFTEAESNMNDLVSEYQQY 424 (425)
T ss_pred ecCCCC---CCcceeEEEecCCcHHHHHHHHHHHHHHHHHhcCcchhhhhccCCc---hHHHHHHHHHHHHHHHHHHhh
Confidence 999985 356899999999999999999996 58999999999999999 599999999999999999976
No 26
>PLN00220 tubulin beta chain; Provisional
Probab=100.00 E-value=1.7e-40 Score=369.35 Aligned_cols=217 Identities=24% Similarity=0.463 Sum_probs=193.6
Q ss_pred chhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhccccc
Q psy3432 439 DSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKN 518 (695)
Q Consensus 439 Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (695)
.+++++|.+|+.-.+..+..+||||.+|+|++++++||||||++||++++++|+..... .
T Consensus 220 ~sf~~~N~lIa~~is~it~slRFpG~ln~~l~~l~~nLVP~P~l~Fl~~s~~P~~~~~~-~------------------- 279 (447)
T PLN00220 220 PSFGDLNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-Q------------------- 279 (447)
T ss_pred CChHHHHhHhhccccccchhhccCCcCCccHHHHHHHhCCccceeEeecccCccccccc-c-------------------
Confidence 68999999999999999999999999999999999999999999999999999975431 1
Q ss_pred hhhhhcccccHHHHHHHhcCCCCceeeeCCCCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeEE
Q psy3432 519 MMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVA 598 (695)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv~ 598 (695)
..++.++.++++++|+++++|++++|. +|+||++++++||+++++++.+++.++++++.++|++|+|++|+++
T Consensus 280 ----~~~~~t~~~l~~~l~~~~n~l~~~~~~---~gk~la~~~~~RG~~~~~ev~~~~~~l~~~~~~~f~~W~p~~~~~~ 352 (447)
T PLN00220 280 ----QYRALTVPELTQQMWDAKNMMCAADPR---HGRYLTASAMFRGKMSTKEVDEQMINVQNKNSSYFVEWIPNNVKSS 352 (447)
T ss_pred ----cccccCHHHHHHHHHhhhhcccccCCC---CchhHHHHHHHcCCCCHHHHHHHHHHHHhhCCCccccccCCCEEEe
Confidence 123467888999999999999999987 6999999999999999999999999999999999999999999999
Q ss_pred eccCCCCCCCCCceEEEeecccchHHHHHHHHh-----cccccccccccccCCcCccchhhHHHHHHHHHHHHHHHHhcc
Q psy3432 599 LSKKSPYVPTSHRVSGLMLANHTNISSLFDRCL-----TGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAAT 673 (695)
Q Consensus 599 ~~~~~p~~p~~~~~s~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li~eY~~~~ 673 (695)
+|+++| .+.+.++++|+|+|+|.++|++++ ||+||||||||++|||+ ++||+||+++|++|+++|++++
T Consensus 353 ~~~~~~---~~~~~s~~~l~N~t~i~~~~~~i~~~f~~m~~rkAflh~Y~~~Gme---e~ef~ea~~~l~~li~~Y~~~~ 426 (447)
T PLN00220 353 VCDIPP---KGLKMASTFIGNSTSIQEMFRRVSEQFTAMFRRKAFLHWYTGEGMD---EMEFTEAESNMNDLVSEYQQYQ 426 (447)
T ss_pred ecCCCC---CCcceeeEEecCchHHHHHHHHHHHHHHHHHhcCcchhhhcccCCc---hHHHHHHHHHHHHHHHHHHHHH
Confidence 999986 356899999999999999999996 58999999999999999 5999999999999999998765
Q ss_pred CC---CccCcCCCchHHH
Q psy3432 674 RP---DYLSWGGAKSEEI 688 (695)
Q Consensus 674 ~~---~~~~~~~~~~~~~ 688 (695)
.. .-.+|+||+|||-
T Consensus 427 ~~~~~~~~~~~~~~~~~~ 444 (447)
T PLN00220 427 DATADEEGEYEDEEEEEE 444 (447)
T ss_pred hccccccccccccccchh
Confidence 32 2256666666653
No 27
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=100.00 E-value=7.7e-40 Score=362.52 Aligned_cols=204 Identities=24% Similarity=0.468 Sum_probs=186.7
Q ss_pred chhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhccccc
Q psy3432 439 DSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKN 518 (695)
Q Consensus 439 Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (695)
.+++++|.+|+.-.+..+..+||+|.+|+|+++|++||||||++||++++|+|+..... ..
T Consensus 221 ~~~~~lN~iIa~~l~~~t~~~rf~g~~~~~l~~l~~nLvP~P~l~fl~~s~~P~~~~~~-~~------------------ 281 (434)
T cd02186 221 PTYTNLNRLIAQVVSSITASLRFDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEK-AY------------------ 281 (434)
T ss_pred CCHHHHHHHHHHHhhccccceecCCccCCCHHHHHhhccccccceeeccccCcccchhh-cc------------------
Confidence 68999999999999999999999999999999999999999999999999999975432 11
Q ss_pred hhhhhcccccHHHHHHHhcCCCCceeeeCCCCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeEE
Q psy3432 519 MMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVA 598 (695)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv~ 598 (695)
.++.++.+|++++|+++++|+.|+|+ +|+||++++++||+++++++.+++.++++++.++|++|+|++++++
T Consensus 282 -----~~~~s~~~l~~~l~~~~~~m~~~~~~---~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~f~~W~p~~~~~~ 353 (434)
T cd02186 282 -----HEQLSVAEITNACFEPANQMVKCDPR---HGKYMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVG 353 (434)
T ss_pred -----ccCCCHHHHHHHHhCccceeeecCCc---chhHHHHHHHHcCCCCHHHHHHHHHHHHHhCCCcCcccCCCcEeee
Confidence 12358899999999999999999997 6999999999999999999999999999999999999999999999
Q ss_pred eccCCCC-CCC----CCceEEEeecccchHHHHHHHHh-----cccccccccccccCCcCccchhhHHHHHHHHHHHHHH
Q psy3432 599 LSKKSPY-VPT----SHRVSGLMLANHTNISSLFDRCL-----TGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQE 668 (695)
Q Consensus 599 ~~~~~p~-~p~----~~~~s~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li~e 668 (695)
+|++||. .|. ..+.++++|+|+|+|.++|++++ ||+||||||||++|||+ ++||+||+++|++|++|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~s~~~l~Nst~i~~~f~~i~~~f~~mf~rkAflh~Y~~~Gme---e~ef~ea~~~l~~li~~ 430 (434)
T cd02186 354 INYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGME---EGEFSEAREDLAALEKD 430 (434)
T ss_pred ecCCCCccCCCccccccceEEEEecCchHHHHHHHHHHHHHHHHHhhcchhhhhcCcCCc---hHHHHHHHHHHHHHHHH
Confidence 9999985 332 34789999999999999999996 58999999999999999 59999999999999999
Q ss_pred HHhc
Q psy3432 669 YCAA 672 (695)
Q Consensus 669 Y~~~ 672 (695)
|+++
T Consensus 431 Y~~~ 434 (434)
T cd02186 431 YEEV 434 (434)
T ss_pred HhhC
Confidence 9873
No 28
>PTZ00387 epsilon tubulin; Provisional
Probab=100.00 E-value=7.5e-40 Score=363.24 Aligned_cols=199 Identities=24% Similarity=0.450 Sum_probs=182.9
Q ss_pred chhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhccccc
Q psy3432 439 DSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKN 518 (695)
Q Consensus 439 Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (695)
.++.++|++|++-.+..|.+.||||++|+|+++|.+||||||++||+++||+|+.......
T Consensus 247 ~~~~~~N~iIa~~l~~~t~~~Rf~g~~n~dl~~i~~nLvP~P~lhFl~~s~~P~~~~~~~~------------------- 307 (465)
T PTZ00387 247 LPYDKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVA------------------- 307 (465)
T ss_pred ccHHHHHHHHHhhhccccceeecCCccCCCHHHHHhhcCCCCCceeeccccCcccchhhcc-------------------
Confidence 6799999999999999999999999999999999999999999999999999997543211
Q ss_pred hhhhhcccccHHHHHHHhcCCCCceeeeCCCCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeEE
Q psy3432 519 MMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVA 598 (695)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv~ 598 (695)
.++.++.||++++|++.++|+.|+|. +|+|||+++++||++.+++|.+++.++|++ ++|++|+|++++++
T Consensus 308 -----~~~~s~~~l~~~l~~~~~~m~~~~~~---~~k~la~~~~~RG~~~~~~v~~~~~~lk~~--~~f~~W~p~~~~~~ 377 (465)
T PTZ00387 308 -----VGPRRLDQMFKDCLDPDHQMVAATPE---AGKYLATALIVRGPQNVSDVTRNILRLKEQ--LNMIYWNEDGFKTG 377 (465)
T ss_pred -----cccCCHHHHHHHHhcccCeeeecCCC---cchHHHHHHHHcCCCChHHHHHHHHHHhcc--ccccccCCCceEEE
Confidence 12357899999999999999999997 699999999999999999999999999865 99999999999999
Q ss_pred eccCCCCCCCCCceEEEeecccchHHHHHHHHh-----cccccccccccccCCcCccchhhHHHHHHHHHHHHHHHHhcc
Q psy3432 599 LSKKSPYVPTSHRVSGLMLANHTNISSLFDRCL-----TGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAAT 673 (695)
Q Consensus 599 ~~~~~p~~p~~~~~s~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li~eY~~~~ 673 (695)
+|+++| .+.+.++++|+|+|+|.++|++++ ||+||||||||+ |||+ ++||+||+++|++|++||++++
T Consensus 378 ~~~~~~---~~~~~s~~~lsNst~I~~~f~~i~~~f~~mf~rkAflH~Y~-egme---e~eF~ea~~~l~~li~~Y~~~~ 450 (465)
T PTZ00387 378 LCNVSP---LGQPYSLLCLANNCCIRNKFESMLERFNKLYKRKSHVHHYT-EYLE---QAYFDETLETIQNLIDDYAYLQ 450 (465)
T ss_pred eeccCC---CCCceeEEEecCChHHHHHHHHHHHHHHHHHhhcchHHhhh-cccc---hHHHHHHHHHHHHHHHHHHHHh
Confidence 999985 456899999999999999999996 589999999999 8998 5999999999999999999986
No 29
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=100.00 E-value=1.4e-39 Score=354.70 Aligned_cols=198 Identities=21% Similarity=0.422 Sum_probs=182.1
Q ss_pred hhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhccccch
Q psy3432 440 SRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNM 519 (695)
Q Consensus 440 a~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 519 (695)
+++++|++|++-.+..++..||||.+|.|++++.+||||||++||++++|+|+..... ..
T Consensus 177 ~~~~~N~~ia~~i~~~t~~~rf~g~~n~d~~~i~~nLvP~P~l~fl~~s~~P~~~~~~-~~------------------- 236 (379)
T cd02190 177 PFDAMNSIVANLLLNLTSSMRFEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLAD-VN------------------- 236 (379)
T ss_pred HHHHHHHHHHhhhcCccceeecccccccchhhhccccccCCCceecccccccccchhh-cc-------------------
Confidence 7999999999999999999999999999999999999999999999999999975421 11
Q ss_pred hhhhcccccHHHHHHHhcCCCCceeeeCCCCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeEEe
Q psy3432 520 MVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVAL 599 (695)
Q Consensus 520 ~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv~~ 599 (695)
.++.++.|+++++|+++++|+.|+|+ +|+||++++++||++++.++.+++.+++++ ++|++|+|+++++++
T Consensus 237 ----~~~~s~~~l~~~l~~~~~~m~~~~~~---~~kyls~~~i~RG~~~~~ei~~~~~~l~~~--~~fv~W~p~~~~~~~ 307 (379)
T cd02190 237 ----VPPRRLDQMFSDAFSRNHQLIRADPK---HGLYLACALLVRGNVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGL 307 (379)
T ss_pred ----ccCCCHHHHHHHHHccccceeecCCC---cchHHHHHHHHcCCCCHHHHHHHHHHHhcc--CcCcCcCCCcEEEee
Confidence 12357899999999999999999987 799999999999999999999999999887 889999999999999
Q ss_pred ccCCCCCCCCCceEEEeecccchHHHHHHHHh-----cccccccccccccCCcCccchhhHHHHHHHHHHHHHHHHhc
Q psy3432 600 SKKSPYVPTSHRVSGLMLANHTNISSLFDRCL-----TGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAA 672 (695)
Q Consensus 600 ~~~~p~~p~~~~~s~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li~eY~~~ 672 (695)
|+++| .+.+.++++++|+|+|.++|++++ ||+||||||||++|||+ ++||+||+++|++|++||+++
T Consensus 308 ~~~~~---~~~~~s~~~lsNsTsI~~~f~~i~~~f~~mf~krAflh~Y~~eG~e---e~ef~ea~~~l~~li~~Y~~l 379 (379)
T cd02190 308 CSVPP---VGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGME---QGDFTEALESISNLIDEYDYL 379 (379)
T ss_pred cccCC---CCcceeEEEecCccHHHHHHHHHHHHHHHHHhcccchhhhhCCCCc---HHHHHHHHHHHHHHHHHHHhC
Confidence 99985 356899999999999999999996 58999999999999998 599999999999999999874
No 30
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=100.00 E-value=1.2e-37 Score=315.79 Aligned_cols=179 Identities=42% Similarity=0.774 Sum_probs=168.6
Q ss_pred CCCcccccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccccchhhhHHhhhhh
Q psy3432 17 GGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIID 96 (695)
Q Consensus 17 ~~~~~~~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~ 96 (695)
..+..++||+|...++|+||+|+||+||+++++++.++.+++|++++++.|+ +|+||||+.
T Consensus 37 ~~~~~~~~f~~~~~~~~~~r~i~iDtd~~~l~~i~~~~~~~l~~~~~~~~~~--~g~g~n~~~----------------- 97 (216)
T PF00091_consen 37 NRENINSFFSESSSGKYVPRAIAIDTDPKVLDEIRASPKRSLFDPNNLISGQ--EGSGNNWAV----------------- 97 (216)
T ss_dssp TSSTGCCTEEESTTTBESEEEEEEESSHHHHHHHHTSEETTESCGGGEEETS--STSTTSHHH-----------------
T ss_pred ccccccceeeeccccccccccccccccccccccccccccccccccccccccc--ccccccccc-----------------
Confidence 3568899999999999999999999999999999888877899999999999 899999999
Q ss_pred hhccCCCcccccCCCceeeccCCCCCCCCCCccc-chhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHH
Q psy3432 97 READGSDSLELYNPENVYLSKDGGGAGNNWASGY-SQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYL 175 (695)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~Gy-~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~l 175 (695)
|| ..|+++.++++|+||+++|+||.+++|+++||||||||||+++.|
T Consensus 98 --------------------------------G~~~~~~~~~~~~~~~ir~~~e~~d~~~~~~i~~slgGGTGSG~~~~l 145 (216)
T PF00091_consen 98 --------------------------------GYYTFGEEALEEILEQIRKEIEKCDSLDGFFIVHSLGGGTGSGLGPVL 145 (216)
T ss_dssp --------------------------------HHHHHHHHHHHHHHHHHHHHHHTSTTESEEEEEEESSSSHHHHHHHHH
T ss_pred --------------------------------cccccccccccccccccchhhccccccccceecccccceecccccccc
Confidence 84 478999999999999999999999999999999999999999999
Q ss_pred HHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCCCChHH
Q psy3432 176 LEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQ 249 (695)
Q Consensus 176 le~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~ 249 (695)
++.|+++||++.+++++|+|+. .|+++++||++++|+.|.+++|+++++||++|.++|.++++++.|+|++
T Consensus 146 ~~~l~~~y~~~~~~~~~ilP~~---~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~~ 216 (216)
T PF00091_consen 146 AEMLREEYPKKPIISFSILPFS---SEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFNE 216 (216)
T ss_dssp HHHHHHTSTTSEEEEEEEE-CG---GGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHHH
T ss_pred chhhhccccccceeeccccccc---cccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcCC
Confidence 9999999999999999999996 6999999999999999999999999999999999999999999888864
No 31
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=100.00 E-value=7e-36 Score=327.45 Aligned_cols=199 Identities=26% Similarity=0.506 Sum_probs=180.6
Q ss_pred chhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhccccc
Q psy3432 439 DSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKN 518 (695)
Q Consensus 439 Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~~ 518 (695)
.++.+++++|++..+..+..+|+||.+|.|++++.+||||||++||++++|+|+..... ..
T Consensus 179 ~~~~~~N~iia~~l~~it~~~r~~g~~n~d~~~i~~~LvP~p~~~fl~~s~~P~~~~~~-~~------------------ 239 (382)
T cd06059 179 PSFDDLNNIIAQIISSITASLRFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLISYDS-QT------------------ 239 (382)
T ss_pred CChHHHHHHHHHhhcccccccccCCCcCCCHHHHhhhcCCCCCceeccccccccccchh-cc------------------
Confidence 68999999999999999999999999999999999999999999999999999975431 11
Q ss_pred hhhhhcccccHHHHHHHhcCCCCceeeeCCCCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeEE
Q psy3432 519 MMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVA 598 (695)
Q Consensus 519 ~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv~ 598 (695)
.++.++.++++++|++.++|+.++|. .|+||++++++||++.++++.+.+.+++.+..++ +|+|++++++
T Consensus 240 -----~~~~~~~~~~~~l~~~~~~~~~~~~~---~~~~la~~~~~RG~~~~~~v~~~~~~~~~~~~~~--~w~p~~~~~~ 309 (382)
T cd06059 240 -----TEKLNLLQIINELFNNDNSFFSCDPT---KGRYLAAALIFRGDVFQSEIQEAINKLKNKLNIQ--SWIPDGFKVS 309 (382)
T ss_pred -----cccCCHHHHHHHHhhcccceeecCCC---cchHHHHHHHHhCCCCHHHHHHHHHHHHHhcccc--cCCCCcEEEE
Confidence 12357888999999999999999987 6999999999999999999999999999886665 9999999999
Q ss_pred eccCCCCCCCCCceEEEeecccchHHHHHHHHh-----cccccccccccccCCcCccchhhHHHHHHHHHHHHHHHHh
Q psy3432 599 LSKKSPYVPTSHRVSGLMLANHTNISSLFDRCL-----TGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCA 671 (695)
Q Consensus 599 ~~~~~p~~p~~~~~s~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li~eY~~ 671 (695)
+|+++|. .+.+.++++|+|+|+|.++|++++ ||+||||||||++|||+ ++||+||++++++|+++|++
T Consensus 310 ~~~~~~~--~~~~~s~~~l~Nstsi~~~l~~i~~~f~~m~~~rAflh~Y~~~G~e---e~ef~ea~~~l~~li~~Y~~ 382 (382)
T cd06059 310 NCKKPPR--AELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEGMD---EMEFTEAESSLEDLIQSYQE 382 (382)
T ss_pred ecCCCCC--cCcceeEEEecCchHHHHHHHHHHHHHHHHHhhCcchhhhcCcCCc---hHHHHHHHHHHHHHHHHhcC
Confidence 9999863 256899999999999999999996 58999999999999998 59999999999999999974
No 32
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=100.00 E-value=3.4e-35 Score=292.46 Aligned_cols=189 Identities=33% Similarity=0.519 Sum_probs=171.5
Q ss_pred ccccCCCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccccchhhhHHhhhhhhhccCC
Q psy3432 23 NWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGS 102 (695)
Q Consensus 23 ~~f~e~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~~~~~~ 102 (695)
.||.+ |++.||+|++|+||++++.+..++.++.|++++.+.++ .++||||++||..+
T Consensus 3 ~~~g~---g~~g~r~v~~d~e~~~i~~i~~~t~~~~l~~~~~~~~k--~~~Gn~~~~G~~~~------------------ 59 (192)
T smart00864 3 KVFGV---GGYGPNAVLVDLEPGVVDEVRANTDAQALNPESLASGK--IGAGNNWTRGLGAG------------------ 59 (192)
T ss_pred EEEEe---CCchhhHHhhhcccCCceEEEECCHHHHhCCcccccch--hcccccccccCCCC------------------
Confidence 35555 37899999999999999999877778899999999988 89999999954321
Q ss_pred CcccccCCCceeeccCCCCCCCCCCcc-cchhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHh
Q psy3432 103 DSLELYNPENVYLSKDGGGAGNNWASG-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLAD 181 (695)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~g~g~~~~~G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~d 181 (695)
| ...|++..++++|+||+++|+| ++|+++||+|||||||+|+++++.++
T Consensus 60 --------------------------~~~~~g~~~~~~~~~~ir~~le~~---d~~~i~~slgGGTGsG~~~~i~~~~~- 109 (192)
T smart00864 60 --------------------------ADPEVGREAAEESLDEIREELEGA---DGVFITAGMGGGTGTGAAPVIAEIAK- 109 (192)
T ss_pred --------------------------CChHHHHHHHHHHHHHHHHHhcCC---CEEEEeccCCCCccccHHHHHHHHHH-
Confidence 2 3479999999999999999999 88999999999999999999999999
Q ss_pred hCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHHhhhcc
Q psy3432 182 RFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 261 (695)
Q Consensus 182 eyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~i~~~ 261 (695)
+||++. ++++|+|+. .|.++++||++++|++|.+++|+++++||++|.++|.+.+.+ .+.|.++|++||+.|+++
T Consensus 110 ~~~~~~-~~~~v~P~~---~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i 184 (192)
T smart00864 110 EYGILT-VAVVTKPFV---FEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRNLPI-RPAFKDANDLLAQAVSGI 184 (192)
T ss_pred HcCCcE-EEEEEEeEe---ecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHH
Confidence 999887 999999954 788999999999999999999999999999999999887775 689999999999999999
Q ss_pred ccccccCC
Q psy3432 262 TSTLRYPS 269 (695)
Q Consensus 262 t~~~Rf~g 269 (695)
|+++||||
T Consensus 185 ~~~~rf~g 192 (192)
T smart00864 185 TDLIRFPG 192 (192)
T ss_pred HHHHcCCC
Confidence 99999987
No 33
>KOG1375|consensus
Probab=100.00 E-value=8.5e-36 Score=308.26 Aligned_cols=179 Identities=27% Similarity=0.521 Sum_probs=160.6
Q ss_pred cCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhccccchhhhhcccccHHHHH
Q psy3432 454 ATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVASIRKTTVLDVM 533 (695)
Q Consensus 454 ~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 533 (695)
..|..+||+|.+|.|++++..|+||||||||++++++|++.... .+.+.+ ++.+++
T Consensus 166 g~tt~~rf~g~lnadl~kl~vnmvpfp~lhffm~g~~pl~s~~~-~q~~a~-----------------------tv~elt 221 (369)
T KOG1375|consen 166 GVTTCLRFPGQLNADLTKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRAL-----------------------TVPELT 221 (369)
T ss_pred CceeecccccccchhhhhhhhccCCCcchhhccccccccccccc-cccccc-----------------------cccccc
Confidence 68889999999999999999999999999999999999987653 333444 455555
Q ss_pred HHhcCCCCceeeeCCCCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeEEeccCCCCCCCCCceE
Q psy3432 534 RRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVS 613 (695)
Q Consensus 534 ~~l~~~~n~~~~~~~~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv~~~~~~p~~p~~~~~s 613 (695)
.+.|+.+|+|..|+ ||+++.++|| +.+++.+++..++.++..+|++|+|+++|+.+|..| |.+.+.+
T Consensus 222 qq~fdaknmm~a~d--------yLt~a~~~rG--smkevDeqm~~vqnk~ss~f~~wiP~~vktavCdip---p~glkms 288 (369)
T KOG1375|consen 222 QQMFDAKNMMTACD--------YLTVAAMFRG--SMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCDIP---PGGLKMS 288 (369)
T ss_pred cccccCcchhhhhh--------hhhhHHHhcc--chhhhHHHhhhccccCcchhhhhcccccceeeccCC---Ccccccc
Confidence 55667888887663 8999999999 889999999999999999999999999999999998 5788999
Q ss_pred EEeecccchHHHHHHHHh-----cccccccccccccCCcCccchhhHHHHHHHHHHHHHHHHhc
Q psy3432 614 GLMLANHTNISSLFDRCL-----TGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAA 672 (695)
Q Consensus 614 ~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li~eY~~~ 672 (695)
++.++|+|+|.++|.++. ||+||||||||++|||+ ++||+||.+++++||.||++.
T Consensus 289 ~tf~~n~taiqelf~~i~eqftamfrrkAflhwy~~egMd---e~EFtEAes~~ndLi~eyqQy 349 (369)
T KOG1375|consen 289 STFIGNNTAIQELFRCISEQFTAMFRRKAFLHWYTGEGMD---EMEFTEAESNMNDLVSEYQQY 349 (369)
T ss_pred ccccccchhHHHHHHHhhhHHHHHHHhhhhhhhcccccch---hhhhhHHHHHHHHHHHHHHHh
Confidence 999999999999999986 58999999999999999 599999999999999999876
No 34
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=100.00 E-value=7.8e-33 Score=307.71 Aligned_cols=196 Identities=17% Similarity=0.261 Sum_probs=164.9
Q ss_pred chhhhHhHHHHHhhccCCCCCCC-c-------cccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHH
Q psy3432 439 DSRREVDELVQEYCAATRPDYLY-P-------SYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVM 510 (695)
Q Consensus 439 Ea~~~l~~li~eY~~~~t~~~r~-~-------g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~ 510 (695)
.+++++|++|++-....+...|+ + |.++.|+++|.+||||||++||++++|+|++.... .....
T Consensus 215 ~~~~~~N~~Ia~~l~~~~~~~r~~~~~~~~~~~~~~~~l~~l~~nLvP~P~~~fl~~s~~P~~~~~~-~~~~~------- 286 (446)
T cd02189 215 VSLSDINKVIAHQLASLLQPSLDSTGSNGALAGRSTNPLNDLVEDLCPHPAYKLLTIRSLPQMPEKS-LAFST------- 286 (446)
T ss_pred CCHHHHHHHHHHHHHHHhhHhhccCcccccccccccCCHHHHHhhCcCCCCceeeecccCCcccccc-ccccc-------
Confidence 58999999999999999998886 6 44799999999999999999999999999986432 22223
Q ss_pred HhhccccchhhhhcccccHHHHHHHhc---CCCCceee-------------------eCCCCCCCCeeeeEeeeccccCC
Q psy3432 511 RRLLQPKNMMVASIRKTTVLDVMRRLL---QPKNMMVS-------------------TAPDRMSQHCYMSILNIIQGEVD 568 (695)
Q Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~n~~~~-------------------~~~~~~~~~~yls~~~~~RG~v~ 568 (695)
.++.+++++++ .+.+.|.. ++|. .++||++++++||++.
T Consensus 287 ----------------~~~~~l~~~l~qm~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~ls~~~i~RG~~~ 347 (446)
T cd02189 287 ----------------FSWSALLKRLHQMLIAGSFMEEGIDWTVRPEGSAASLLSGNKSTH---FNKSLANLLILRGKDV 347 (446)
T ss_pred ----------------CCHHHHHHHHHHhhccccccccccccccccccccccccccccCCc---ccceeeeeeeeeCCCc
Confidence 35555555554 45566655 4555 6999999999999998
Q ss_pred chhHHHHHHHHHHhcccCcccCCCCceeEEeccCCCCCCCCCceEEEeecccchHHHHHHHHh-----cccccccccccc
Q psy3432 569 PCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCL-----TGKREAFLEQFR 643 (695)
Q Consensus 569 ~~~v~~~i~~ik~~~~~~fv~W~p~~~kv~~~~~~p~~p~~~~~s~~~laNsTsI~~~f~~i~-----~~~krAFlHwY~ 643 (695)
++++...+ + +.+.|++|+|+++++++|+++|..+ ..+.++++|+|+|+|.++|++++ ||+||||||||+
T Consensus 348 ~~~~~~~~---~--~~~~f~~W~p~~~~~~~~~~~~~~~-~~~~s~~~l~Nst~i~~~l~~i~~~f~~mf~~rAflH~Y~ 421 (446)
T cd02189 348 TSADERKF---R--DPLLYVNWSPSPVRFSISSHKRSFS-KYEKSVTLVSNSQTIIDPLDNILEKAWNMFASGAYLHQYE 421 (446)
T ss_pred hHHHHHHH---h--ccCcCCCcCCCCEeeeecCCCCCcC-CcceeEEEEeCCchHHHHHHHHHHHHHHHHhcCcchhhhh
Confidence 88887543 3 5699999999999999999986432 35899999999999999999996 589999999999
Q ss_pred cCCcCccchhhHHHHHHHHHHHHHHHH
Q psy3432 644 KEEMFLESLDELDDSRREVDELVQEYC 670 (695)
Q Consensus 644 ~eGm~~~~~~ef~ea~e~v~~li~eY~ 670 (695)
++||+ ++||.||+++|++|++||+
T Consensus 422 ~~Gme---e~ef~eA~~~l~~li~~Y~ 445 (446)
T cd02189 422 KYGLE---EEDFLDAFATLEQIIASYK 445 (446)
T ss_pred ccCCc---HHHHHHHHHHHHHHHHHhc
Confidence 99999 5999999999999999997
No 35
>KOG1376|consensus
Probab=99.98 E-value=1.6e-33 Score=289.77 Aligned_cols=178 Identities=23% Similarity=0.422 Sum_probs=158.5
Q ss_pred cchhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhcccc
Q psy3432 438 DDSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPK 517 (695)
Q Consensus 438 ~Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (695)
..++.+++.+|++..+..+.++||+|.+|+||.+++||||||| + |+|+..... ....
T Consensus 220 rPtyt~lnr~i~qVvSsitaSlrf~g~lnvdl~efqTnlVpyp----l---yap~~s~~~-a~he--------------- 276 (407)
T KOG1376|consen 220 RPTYTNLNRLIAQVVSSITASLRFDGALNVDLTEFQTNLVPYP----L---YAPVISAEK-AYHE--------------- 276 (407)
T ss_pred CccccchhhhHHhhhcccccccccCCcccccHHHHHhhCCCCc----c---cccchhhcc-cchh---------------
Confidence 3889999999999999999999999999999999999999999 2 899865431 2111
Q ss_pred chhhhhcccccHHHHHHHhcCCCCceeeeCCCCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeE
Q psy3432 518 NMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQV 597 (695)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv 597 (695)
+.++++++..+|++.|+|++|||+ .||||+||++|||++.|+|++.++..||.+++++||+
T Consensus 277 --------~~sv~~it~~~fe~~~qmvkcDP~---~gkyma~cllyrgdvvP~~v~~A~a~ikt~rt~qfvd-------- 337 (407)
T KOG1376|consen 277 --------QLSVAEITNACFEPANQMVKCDPR---HGKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVD-------- 337 (407)
T ss_pred --------hhhHHhhccccccccccccccCCc---cchHHHHHHhccCCcCcccchHHHHhhhhccccccce--------
Confidence 247888999999999999999998 7999999999999999999999999999999999998
Q ss_pred EeccCCCCCCCCC----ceEEEeecccchHHHHHHHH-----hcccccccccccccCCcCccchhhHHHHHHHHHHHH
Q psy3432 598 ALSKKSPYVPTSH----RVSGLMLANHTNISSLFDRC-----LTGKREAFLEQFRKEEMFLESLDELDDSRREVDELV 666 (695)
Q Consensus 598 ~~~~~~p~~p~~~----~~s~~~laNsTsI~~~f~~i-----~~~~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li 666 (695)
-++|.|. .+.+|||+|+|+|++.|.|+ +||+||||||||++|||+ ++||.||||++..|+
T Consensus 338 ------~~v~gg~lakv~Ravcmlsnttai~eawarld~kfdLmyakrafVhwyvgegme---egef~ea~ed~a~le 406 (407)
T KOG1376|consen 338 ------TVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME---EGEFSEAREDLAALE 406 (407)
T ss_pred ------eeccCcchhhhceeeEecCCCcHHHHHHhhcchhhhhhhcchheeeeccCCCcc---ccchhhhhhhHHhhc
Confidence 1234443 68999999999999999999 579999999999999999 599999999998875
No 36
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=99.97 E-value=2.6e-29 Score=279.20 Aligned_cols=383 Identities=19% Similarity=0.216 Sum_probs=252.6
Q ss_pred CCcccccccC----CCCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccccchhhhHHhh
Q psy3432 18 GGAGNNWASG----ADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFD 93 (695)
Q Consensus 18 ~~~~~~~f~e----~~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~ 93 (695)
....+++|++ .++.+|+||+|++|+.+........|... .|+ + .+.-.-|. .|.
T Consensus 37 ~~~~dvl~r~g~~~~g~~tytPR~l~~Dlkg~~gsl~~~~~l~-~~~---l------~~~v~~WS-Dy~----------- 94 (493)
T cd06060 37 ELDHDVLYREGRTRQGQVTYTPRLLLLDLKGTLGHLPEEGSLK-VYN---L------EASVNVWS-DYL----------- 94 (493)
T ss_pred cCCCceeeeccccCCCceeEcCcEEEEecCCcccccccccCcC-Ccc---c------ccchhhhh-hcc-----------
Confidence 3467899998 34789999999999999877655444331 111 1 12223344 222
Q ss_pred hhhhhccCCCcccccCCCceeeccCC---CCCCCCCCcccc----hhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCC
Q psy3432 94 IIDREADGSDSLELYNPENVYLSKDG---GGAGNNWASGYS----QGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGG 166 (695)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~g~g~~~~~Gy~----~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GG 166 (695)
...|||++++.+++. .+.++.|..|+. .+.+..|+++|+||+++|+||++|||++++|++||
T Consensus 95 -----------r~~yhPrS~~~L~~~~~~~~~~~fd~fg~G~~~f~~~~~~d~~~DrIR~~vEeCD~LQGFqi~~sl~gG 163 (493)
T cd06060 95 -----------YARLHPRSINVINQYNHDGTSQPFEVFGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDG 163 (493)
T ss_pred -----------eeeeCCCceeeccchhcCCCCCCccccccChhhhcchhhHHHHHHHHHHHHHhCcccccEEEEEecCCc
Confidence 367999999999775 445556655532 45668899999999999999999999999999999
Q ss_pred CCCCchHHHHHHHHhhCCCceeEEEEeecCCCC---CCccccchhhHHHhHhhhhccCCcceeecCh-hhHHhh-----c
Q psy3432 167 TGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDE---ISDVVVQPYNSLLTLKRLTLNADCVVVLDNT-ALNRIA-----C 237 (695)
Q Consensus 167 TGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~---~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~-al~~i~-----~ 237 (695)
| ||+|+.++|.|+||||++.++++++.|.+.. ..+.++++||++|++++|.+++|+++|+.-. .++... .
T Consensus 164 ~-sG~gs~lLE~L~DEy~k~~i~~~~v~P~~~~~~~~~~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~~~w~~~~~p~~~ 242 (493)
T cd06060 164 F-SGVGAKCLEHLQDEYGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRKPGPPRTF 242 (493)
T ss_pred c-cchHHHHHHHHHHhcCccceeEEEeCCCcccccccchhHHHHHHHHHHHHHHHhcCCEEEEEecccccccCCCCCCCC
Confidence 9 7999999999999999999999999997521 1257899999999999999999999999743 222221 1
Q ss_pred cccCCCCCChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCccccccccc-cccccccccccccccHHHHH
Q psy3432 238 DRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYT-PLTAEHEVASIRKTTVLDVM 316 (695)
Q Consensus 238 ~~l~~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~-P~~~~~~~~~~~~~t~~~l~ 316 (695)
..+.++..+-.+.-.++|.+|.++|.+.|..+.. .+|.+++..|.+.- .++...+-+ |+-.. .+-++.+++
T Consensus 243 ~~l~~d~~~~~htSAllA~aldT~TLp~Rl~~~~-~~m~~l~~~l~~~g-Rki~~~~~a~P~p~~------~~~~l~d~L 314 (493)
T cd06060 243 PYLNYDAELPYHTSALLATALDTLTLPYRLKSSP-SSLSGLCDDLSFSG-RKVVAAGLALPFPMV------GGQDLIDFL 314 (493)
T ss_pred cccccCCCCchHHHHHHHHHHhhccccceeccCC-ccHHHHHHHhhhcc-chhhhhccCCCCCCC------CCCcHHHHH
Confidence 2234455567788899999999999999998765 57888999888644 466554432 33221 223456666
Q ss_pred HhhcCCCC-CccccCCCCCCccchhhhhhhhhCCCCh-------------------HhHHHHHHHHhhhc---ccCceec
Q psy3432 317 RRLLQPKN-MMVSTAPDRMSQHCYMSILNIIQGEVDP-------------------CQVHKSLQRIRERK---LVNFIPW 373 (695)
Q Consensus 317 ~~l~~~~n-~l~~~~~~~~~~~~~ls~~~~~RG~~~~-------------------~~v~~~~~~lk~~~---~~~fv~W 373 (695)
.++-...- ..+.|+... ...+....++.||-... ..+.+.++..-++. +..-+.=
T Consensus 315 ~~~~~~~~~~~l~p~~~~--~~~~~~qsv~~rG~~~~~~~~~~~~~~~~~~~~~~c~s~~~~l~~y~~~~~~~s~~~~~~ 392 (493)
T cd06060 315 DQSDGAVPWLQLTPGCQI--GTRCVIQSVVLRGIPEERLKRRLLAGDQARSPAYACSSVEEMLQLYLQCQYPGSMSALSV 392 (493)
T ss_pred HhcCCCCCccccCCCCcc--CceeeeeeehhcCCChhhccccccccccccccchhcCCHHHHHHHHHHhccCCcchhhee
Confidence 65533221 112332111 24677777788883210 01111222211110 0000000
Q ss_pred CCCCceEEEeecCCCc--C------CC---------Cc----e---eEeeeccchhhHHhhh------hhccCccccccc
Q psy3432 374 SPAGIQVALSKKSPYV--P------TS---------HR----V---SGLMLANHTNISSGIS------WQLPKREAFLEQ 423 (695)
Q Consensus 374 ~p~~~~v~~~~~~p~~--~------~~---------~~----~---s~~~lsNstsI~~~~~------~~m~~krAflH~ 423 (695)
.+.++++. .|+. + .| .. . .+..|.|++++.+.++ .++=-+| +|.
T Consensus 393 ~~~p~~~~----~PfP~if~~~v~~~G~~~~~~~~~~~~~~V~s~p~~a~l~ss~~l~~~l~~l~~~~~kl~~~r--~~~ 466 (493)
T cd06060 393 LPLPLKIR----VPFPYIFNPNISADGFVLDNSSRGSAGADVESIPVLAALQSSPSLGEMLESLHRQLSKLDLRR--KAS 466 (493)
T ss_pred cCCCCCCC----CCCchhhccccCCCccccCCCcccccccceeechhhhhhcCchHHHHHHHHHHHHHHhhhhHh--hhc
Confidence 01111110 0100 0 00 00 0 1345889999999999 4443334 678
Q ss_pred cccccccccccccccchhhhHhHHHHHhhc
Q psy3432 424 FRKEEMFLESLDELDDSRREVDELVQEYCA 453 (695)
Q Consensus 424 Y~~eGmee~~~~eF~Ea~~~l~~li~eY~~ 453 (695)
|...|+|+ |||+|+.+.|.++.+.|+.
T Consensus 467 ~~~~g~e~---de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 467 FFESGLEE---DEYKELLEQLLDLAECYED 493 (493)
T ss_pred ccccccCH---HHHHHHHHHHHHHHHhhcC
Confidence 99999998 9999999999999999963
No 37
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.96 E-value=9.9e-30 Score=236.07 Aligned_cols=125 Identities=37% Similarity=0.734 Sum_probs=108.1
Q ss_pred CcccccccccCCcchhhhhhheecchhhHHHHhhccccchhhhhcccccHHHHHHHhcCCCCceeeeCCCCCCCCeeeeE
Q psy3432 480 PRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSI 559 (695)
Q Consensus 480 PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~yls~ 559 (695)
||||||++||||++...+ .. .++.++.||++++|+++|+|++|+|+ +|+|||+
T Consensus 1 PrlHFl~~s~aP~~~~~~-~~-----------------------~~~~s~~~l~~~lf~~~n~m~~~~~~---~gkyla~ 53 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPED-SN-----------------------YEKLSVQDLTRQLFDPKNQMVSCDPR---QGKYLAC 53 (126)
T ss_dssp TTT-EEEEEESSTSBTTS-TT-----------------------SSCCTHHHHHHHHTSGGGBSSSS-TT---SS-EEEE
T ss_pred CCeeeecCccccccccch-hh-----------------------hhcccHhHhhHHHHhhhhhccccccc---cchhhhh
Confidence 999999999999986642 21 23358899999999999999999998 7999999
Q ss_pred eeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeEEeccCCCCCCCCCceEEEeecccchHHHHHHHHh
Q psy3432 560 LNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCL 631 (695)
Q Consensus 560 ~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv~~~~~~p~~p~~~~~s~~~laNsTsI~~~f~~i~ 631 (695)
+++|||+++++||++++.++|++++++|++|+|++||+|+|++||+.+...+++++||+|+|+|+++|+++.
T Consensus 54 ~~l~RG~v~~~di~~~i~~ik~~~~~~Fv~W~p~~~kv~~~~~~p~~~~~s~~s~~~LsNsTaI~~~f~~i~ 125 (126)
T PF03953_consen 54 ALLYRGDVSPKDINEAIAKIKQKNSIQFVDWIPTGFKVGICKVPPYGQPNSDRSGLMLSNSTAIAEVFSRIS 125 (126)
T ss_dssp EEEEEESSTHHHHHHHHHHHHCTSTTSB-SSSTTCEEEEEESS-STSTTTSSEEEEEEEEEGGGHHHHHHHH
T ss_pred hhccccccccchhhhHHHhhhhccccceeeecCchhhcccccCCCcccCCCcceEEEeCChHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999864455889999999999999999985
No 38
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.96 E-value=2.9e-29 Score=270.60 Aligned_cols=210 Identities=18% Similarity=0.293 Sum_probs=176.7
Q ss_pred ccccccCCC--CCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccccchhhhHHhhhhhhh
Q psy3432 21 GNNWASGAD--DEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDRE 98 (695)
Q Consensus 21 ~~~~f~e~~--~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~~ 98 (695)
.+.+++... +.+|+||+|+||+|+..++.+.. .+.|+++++|+ .. +
T Consensus 16 v~~l~~~~~~~~~~~~~~~iavntD~~~L~~l~~-----~~~~~ki~~g~--~~-----t-------------------- 63 (349)
T cd02202 16 VDALNRHDKRSGFGYCVGALAINTAKNDLKGLKH-----IPAEDRILIGQ--SE-----V-------------------- 63 (349)
T ss_pred HHHHHHhCCCcCCccceeEEEEECCHHHHHhhhc-----CCCCCEEEecC--cc-----c--------------------
Confidence 344444332 23789999999999999887643 45788888887 21 1
Q ss_pred ccCCCcccccCCCceeeccCCCCCCCCCCcccchhhhhHHHHHHHHHHhhcCCCC--CCceeEeeecCCCCCCCchHHHH
Q psy3432 99 ADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDS--LEGFVLCHSIAGGTGSGMGSYLL 176 (695)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~g~g~~~~~Gy~~g~~~~d~~~d~IR~~~E~cD~--lqgf~i~~Sl~GGTGSGlgs~ll 176 (695)
.|.|+|++| ..|++..++..|.||+++|.||. +|+|+|+||||||||||+++.++
T Consensus 64 -------------------~G~GaG~~~----~~G~~~aee~~e~I~~~le~~~~~~~d~~~i~aglGGGTGsG~~p~ia 120 (349)
T cd02202 64 -------------------KGHGVGADR----ELGAEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVLA 120 (349)
T ss_pred -------------------CCCCCCCCh----HHHHHHHHHHHHHHHHHHhccccccccEEEEecccCCCccccHHHHHH
Confidence 134455443 35788899999999999999997 99999999999999999999999
Q ss_pred HHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHH
Q psy3432 177 EHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVST 256 (695)
Q Consensus 177 e~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~ 256 (695)
+.++++|+ +.+++++++|+. .+.++++||+++++++|.+++|++++|||++|.++|.. + .+.|.++|++|++
T Consensus 121 e~lke~~~-~~~~~iv~~P~~---~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~-~---~~~f~~~N~~Ia~ 192 (349)
T cd02202 121 KELKERYE-EPVYALGVLPAR---EEGERYSANAARSLDALSEEADAIILFDNDAWKRKGES-V---EEAYDRINEEIAR 192 (349)
T ss_pred HHHHHhCC-ccEEEEEEecCC---CCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc-h---HHHHHHHHHHHHH
Confidence 99999999 889999999998 56689999999999999999999999999999998743 2 3899999999999
Q ss_pred hhhcccccccc-----CCCCccccccccCCcccCCCccccccccc
Q psy3432 257 IMAVSTSTLRY-----PSYMNNDLIGLIAPLIPTPRLHFLMTGYT 296 (695)
Q Consensus 257 ~i~~~t~~~Rf-----~g~~n~dl~~l~~nLvP~P~l~fl~~s~~ 296 (695)
.++.++.+.|| +|..|+|+.|+.++|.+. .+.+..++
T Consensus 193 ~i~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~---G~~~iG~g 234 (349)
T cd02202 193 RIGLLLRAGEANAGDSVGESVLDASEVINTLSGG---GFATIGYA 234 (349)
T ss_pred HHHHHHHhhhcccCCCCCeEeccHHHHHHHhccC---CeEEEEEE
Confidence 99999999999 999999999999999764 55555554
No 39
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.93 E-value=2.9e-26 Score=242.83 Aligned_cols=262 Identities=19% Similarity=0.218 Sum_probs=187.6
Q ss_pred eeecCCCCCCCCCccccccccchhhhHHhhhhhhhccCCCcc--cccCCCceeec-c---CCCCCCCCCCcccchhhhhH
Q psy3432 64 VYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSL--ELYNPENVYLS-K---DGGGAGNNWASGYSQGKKLQ 137 (695)
Q Consensus 64 ~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~---~~~g~g~~~~~Gy~~g~~~~ 137 (695)
.++|- +|+|+|-+. .+.+.-...++.-+.|+|.. ...++.+.+++ + .|.|+|++|. .|++..
T Consensus 4 ~viGv--Gg~G~n~v~------~~~~~~~~~~~~iainTd~~~L~~~~a~~ki~iG~~~t~g~GaG~~~~----~G~~~a 71 (303)
T cd02191 4 AVIGF--GGAGGNIVD------KFLEYDKEGRSAVAVNTDAQDLLGLEAENRVLIGQARTKGLGAGANPE----LGAEAA 71 (303)
T ss_pred EEEEE--CchHHHHHH------HHHHcCCCCccEEEEECcHHHHhcCCCCcEEecCCccccCCCCCCCHH----HHHHHH
Confidence 46788 899988776 22221112234445566663 22334444544 3 6889998775 556888
Q ss_pred HHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhh
Q psy3432 138 EEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRL 217 (695)
Q Consensus 138 d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l 217 (695)
++++|+||+.+|.||. |+|++|||||||||+++.+++.+++.|+ . +++|+|.| ...|..+++||+.+++++|
T Consensus 72 ~e~~~~I~~~le~~D~---v~i~aglGGGTGSG~ap~ia~~~ke~~~--~--~~~vvt~P-f~~Eg~~~~~NA~~~l~~L 143 (303)
T cd02191 72 EEVQEAIDNIPVHVDM---VFITAGLGGGTGTGGAPVVAEHLKRIGT--L--TVAVVTLP-FSDEGGIRMLNAAEGFQTL 143 (303)
T ss_pred HHHHHHHHHHHcCCCE---EEEEeccCCccchhHHHHHHHHHHHhCC--C--EEEEEeCC-cccCCccchhhHHHHHHHH
Confidence 9999999999999995 8999999999999999999999999986 3 44455544 2378899999999999999
Q ss_pred hccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCcccccccccc
Q psy3432 218 TLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTP 297 (695)
Q Consensus 218 ~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~~P 297 (695)
.+++|+++++||++|.++|.+ +.+. +.|+.+|++|++.+++++..+|+||.+|+|+.++.+.|- ...+-++....+.
T Consensus 144 ~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~~~g~invD~~dv~~~l~-~~G~a~ig~g~~~ 220 (303)
T cd02191 144 VREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIEIEGEINVDFADVKNVMD-GGGVAMVGYGSED 220 (303)
T ss_pred HHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhccCCcccCCHHHHHHHhc-cCCeEEEEEEEec
Confidence 999999999999999999987 7764 699999999999999999999999999999999988773 3433333322221
Q ss_pred ccccccccccccccHHHHHHhhcCCCCCccc-cCCCCCCccchhhhhhhhhC--CCChHhHHHHHHHHhhh
Q psy3432 298 LTAEHEVASIRKTTVLDVMRRLLQPKNMMVS-TAPDRMSQHCYMSILNIIQG--EVDPCQVHKSLQRIRER 365 (695)
Q Consensus 298 ~~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~-~~~~~~~~~~~ls~~~~~RG--~~~~~~v~~~~~~lk~~ 365 (695)
- .....+.+++.++. .+.. ++... .+ ..++.+.| +++..++.+..+.+++.
T Consensus 221 g----------~~~~~~a~~~Al~~--pll~~~~~~~---A~--~~Lv~i~g~~~l~~~e~~~~~~~i~~~ 274 (303)
T cd02191 221 V----------TNRATEAVRKAALG--PLLLPCEIEG---AE--GALLVMAGPPDLNLKEIERVRKWLEEQ 274 (303)
T ss_pred C----------chHHHHHHHHHHhC--CCCCCCCccc---CC--EEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 0 11244455444442 2332 33211 11 12233444 67888898888877754
No 40
>PF03953 Tubulin_C: Tubulin C-terminal domain; InterPro: IPR018316 This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006184 GTP catabolic process, 0051258 protein polymerization, 0043234 protein complex; PDB: 3RYH_A 3RYI_A 3HKE_C 3HKD_C 3HKB_A 3N2K_A 3N2G_A 3HKC_C 3RYF_C 3RYC_A ....
Probab=99.92 E-value=1e-25 Score=209.23 Aligned_cols=122 Identities=36% Similarity=0.719 Sum_probs=110.6
Q ss_pred CCccccccccccccccccccccccccHHHHHHhhcCCCCCccccCCCCCCccchhhhhhhhhCCCChHhHHHHHHHHhhh
Q psy3432 286 PRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRER 365 (695)
Q Consensus 286 P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~~~~~~~ls~~~~~RG~~~~~~v~~~~~~lk~~ 365 (695)
||+||++++|+|+..... ..+++.++.||++++|+++|+|++|++.+ |+||||++++||+++++||++++.++|.+
T Consensus 1 PrlHFl~~s~aP~~~~~~-~~~~~~s~~~l~~~lf~~~n~m~~~~~~~---gkyla~~~l~RG~v~~~di~~~i~~ik~~ 76 (126)
T PF03953_consen 1 PRLHFLLSSYAPLTSPED-SNYEKLSVQDLTRQLFDPKNQMVSCDPRQ---GKYLACALLYRGDVSPKDINEAIAKIKQK 76 (126)
T ss_dssp TTT-EEEEEESSTSBTTS-TTSSCCTHHHHHHHHTSGGGBSSSS-TTS---S-EEEEEEEEEESSTHHHHHHHHHHHHCT
T ss_pred CCeeeecCccccccccch-hhhhcccHhHhhHHHHhhhhhcccccccc---chhhhhhhccccccccchhhhHHHhhhhc
Confidence 899999999999998753 57888999999999999999999999975 99999999999999999999999999999
Q ss_pred cccCceecCCCCceEEEeecCCCcCCCCceeEeeeccchhhHHhhh
Q psy3432 366 KLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSGIS 411 (695)
Q Consensus 366 ~~~~fv~W~p~~~~v~~~~~~p~~~~~~~~s~~~lsNstsI~~~~~ 411 (695)
..++||+|+|+++|+++|++||+..+..+++++||+|+|+|.++|+
T Consensus 77 ~~~~Fv~W~p~~~kv~~~~~~p~~~~~s~~s~~~LsNsTaI~~~f~ 122 (126)
T PF03953_consen 77 NSIQFVDWIPTGFKVGICKVPPYGQPNSDRSGLMLSNSTAIAEVFS 122 (126)
T ss_dssp STTSB-SSSTTCEEEEEESS-STSTTTSSEEEEEEEEEGGGHHHHH
T ss_pred cccceeeecCchhhcccccCCCcccCCCcceEEEeCChHHHHHHHH
Confidence 8899999999999999999999988888899999999999999986
No 41
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.90 E-value=2e-24 Score=232.24 Aligned_cols=268 Identities=18% Similarity=0.237 Sum_probs=186.6
Q ss_pred CceeecCCCCCCCCCccccccccchhhhHHhhhhhhhccCCCcc--cccCCCceeec----cCCCCCCCCCCcccchhhh
Q psy3432 62 ENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSL--ELYNPENVYLS----KDGGGAGNNWASGYSQGKK 135 (695)
Q Consensus 62 ~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~----~~~~g~g~~~~~Gy~~g~~ 135 (695)
+-.++|- +|+|+|-.. .+.+.-....+.-+.|+|.. ....+.+.+++ ..|.|+|++|. .|++
T Consensus 19 ~i~viGv--Gg~G~n~v~------~l~~~~~~~~~~iainTD~~~L~~~~a~~ki~iG~~~t~G~GaG~~~~----~G~~ 86 (349)
T TIGR00065 19 KIKVIGV--GGGGNNTVN------RMLEEGVEGVEFIAINTDAQHLKTTKADKKILIGKKLTRGLGAGGNPE----IGRK 86 (349)
T ss_pred eEEEEEe--CCcHHHHHH------HHHHcCCCceEEEEEECCHHHHhcCCCCeEEEcCCCCCCCCCCCCCHH----HHHH
Confidence 3456899 899998775 23222222334455677764 33334444444 34788986664 6788
Q ss_pred hHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHh
Q psy3432 136 LQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLK 215 (695)
Q Consensus 136 ~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~ 215 (695)
..++.+|.||+.+|.||.+ +|+||||||||||+++.+++.+++ |+ +.++++.++|+. .|..+++|||.++++
T Consensus 87 ~aee~~d~Ir~~le~~D~v---fI~aglGGGTGSG~apvia~~ake-~~-~l~vaivt~Pf~---~Eg~~r~~nA~~~l~ 158 (349)
T TIGR00065 87 AAEESRDEIRKLLEGADMV---FITAGMGGGTGTGAAPVVAKIAKE-LG-ALTVAVVTKPFK---FEGLKRRKKAEEGLE 158 (349)
T ss_pred HHHHHHHHHHHHHhCCCEE---EEEEeccCccchhHHHHHHHHHHH-cC-CCEEEEEeCCcc---ccchhhHHHHHHHHH
Confidence 9999999999999999995 999999999999999977777665 54 455556666665 788999999999999
Q ss_pred hhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCcccccccc
Q psy3432 216 RLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGY 295 (695)
Q Consensus 216 ~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s~ 295 (695)
.|.+++|+++++||++|.++|.+ +.+. ..|+.+|++|++.+.++|.++|+||.+|.|+.++.+.|-- +..-++....
T Consensus 159 ~L~~~~D~vividNd~L~~~~~~-~~i~-~af~~~N~iia~~i~~it~~ir~~g~iNvDf~dv~~vl~~-~G~a~iG~g~ 235 (349)
T TIGR00065 159 RLKQAVDTLIVIPNDKLLEVVPN-LPLN-DAFKVADDVLVRAVKGISELITKPGLINIDFADVRAVMSG-GGVAMMGIGE 235 (349)
T ss_pred HHHHhCCEEEEEeCHHHHHhhcC-CCHH-HHHHHHHHHHHHHHHhHHHhhccCCcCcCCHHHHHHHHhc-CCeEEEEEEE
Confidence 99999999999999999999987 7764 5999999999999999999999999999999999987743 3333433332
Q ss_pred ccccccccccccccccHHHHHHhhcCCCCCccccCCCCCCccchhhhhhhhhC--CCChHhHHHHHHHHhhh
Q psy3432 296 TPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQG--EVDPCQVHKSLQRIRER 365 (695)
Q Consensus 296 ~P~~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~~~~~~~ls~~~~~RG--~~~~~~v~~~~~~lk~~ 365 (695)
+.-.. ......+-.++.+.. .+....... ..+- .++.+.| ++...++.+.+..+++.
T Consensus 236 ~~g~~-------~~~r~~~A~~~al~~--pLl~~~~i~--~A~~--~Lv~i~~~~~l~l~ev~~~~~~i~~~ 294 (349)
T TIGR00065 236 ALGED-------TANRAFEAVRKALSS--PLLDVDKIS--GAKG--ALVHITGGADLTLLEAEEIQEIITSE 294 (349)
T ss_pred ecCCc-------chHHHHHHHHHHHhC--CCcCCcccc--cccE--EEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 21100 000233444443332 233221111 0111 1222333 67888898888877754
No 42
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.90 E-value=2.3e-24 Score=229.30 Aligned_cols=201 Identities=18% Similarity=0.259 Sum_probs=158.9
Q ss_pred eeecCCCCCCCCCccccccccchhhhHHhhhhhhhccCCCcc--cccCCCceeec-c---CCCCCCCCCCcccchhhhhH
Q psy3432 64 VYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSL--ELYNPENVYLS-K---DGGGAGNNWASGYSQGKKLQ 137 (695)
Q Consensus 64 ~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~-~---~~~g~g~~~~~Gy~~g~~~~ 137 (695)
.++|- +|+|+|-.. .+.+.-....+.-+.|+|.+ ....+.+.+++ + .|.|+|++|. .|++..
T Consensus 4 ~viGv--Gg~G~n~v~------~l~~~~~~~~~~~a~ntD~~~L~~~~~~~k~~ig~~~t~g~Gag~~~~----~g~~~a 71 (304)
T cd02201 4 KVIGV--GGGGGNAVN------RMIESGLEGVEFIAANTDAQALAKSKAPNKIQLGKELTRGLGAGGDPE----VGRKAA 71 (304)
T ss_pred EEEEe--CCcHHHHHH------HHHHcCCCCceEEEEECCHHHHhcCCCCcEEEcCCCCCCCCCCCCCHH----HHHHHH
Confidence 46788 889988765 22222112233345566663 33333444444 3 4889997775 556778
Q ss_pred HHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHhhh
Q psy3432 138 EEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRL 217 (695)
Q Consensus 138 d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l 217 (695)
++..|+||+.+|.||.+ +|+||||||||||+++.+++..++ |+ +..+++.++|+. .|..+++||+.++++.|
T Consensus 72 ~~~~~~I~~~l~~~d~v---~i~aglGGGTGSG~ap~ia~~a~e-~g-~~~~~vvt~Pf~---~Eg~~~~~nA~~~l~~L 143 (304)
T cd02201 72 EESREEIKEALEGADMV---FITAGMGGGTGTGAAPVIAKIAKE-MG-ALTVAVVTKPFS---FEGKKRMRQAEEGLEEL 143 (304)
T ss_pred HHHHHHHHHHHhCCCEE---EEeeccCCCcchhHHHHHHHHHHH-cC-CCEEEEEeCCcc---ccchhHHHHHHHHHHHH
Confidence 89999999999999985 999999999999999998776665 55 356666666665 78889999999999999
Q ss_pred hccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHHhhhccccccccCCCCccccccccCCcccC
Q psy3432 218 TLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPT 285 (695)
Q Consensus 218 ~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~ 285 (695)
.+++|+++++||++|.++|.+.+.+.. .|..+|++|++.++++|.++|+||.+|+|+.++.+.|-.-
T Consensus 144 ~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~~~g~invD~~dv~~vl~~~ 210 (304)
T cd02201 144 RKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLITKPGLINLDFADVKTVMKNK 210 (304)
T ss_pred HHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHhccC
Confidence 999999999999999999988787664 8999999999999999999999999999999999988643
No 43
>PRK13018 cell division protein FtsZ; Provisional
Probab=99.89 E-value=1e-23 Score=227.57 Aligned_cols=265 Identities=23% Similarity=0.298 Sum_probs=191.3
Q ss_pred CCceeecCCCCCCCCCccccccccchhhhHHhhhhhhhccCCCcccc---cCCCceeec---cCCCCCCCCCCcccchhh
Q psy3432 61 PENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLEL---YNPENVYLS---KDGGGAGNNWASGYSQGK 134 (695)
Q Consensus 61 ~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~---~~~~g~g~~~~~Gy~~g~ 134 (695)
.+-.++|. +|+|+|-.. .+.+.-....+.-+.|+|.+.+ -.+.+++++ ..|.|+|++| ..|+
T Consensus 29 ~~I~ViGv--GGaG~N~v~------~m~~~~~~~v~~iaiNTD~q~L~~~~a~~ki~iG~~~t~G~GaG~dp----~~G~ 96 (378)
T PRK13018 29 PKIVVVGC--GGAGNNTIN------RLYEIGIEGAETIAINTDAQHLAMIKADKKILIGKSLTRGLGAGGDP----EVGR 96 (378)
T ss_pred CeEEEEEe--CCcHHHHHH------HHHHcCCCCceEEEEECCHHHHhcCCCCcEEecCCccCCCCCCCCCh----HHHH
Confidence 33456899 999998776 2222222234455567776422 234555553 4688898555 4566
Q ss_pred hhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhH
Q psy3432 135 KLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTL 214 (695)
Q Consensus 135 ~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl 214 (695)
+..++..|.||+.+|.||. |+|++|||||||||+++.+++.+++. + ...+++++.|+. .|...+..||.++|
T Consensus 97 ~aaee~~d~I~~~le~~D~---vfI~aGLGGGTGSGaapvIa~iake~-g-~ltv~vVt~Pf~---~EG~~r~~nA~~gL 168 (378)
T PRK13018 97 KAAEESRDEIKEVLKGADL---VFVTAGMGGGTGTGAAPVVAEIAKEQ-G-ALVVGVVTKPFK---FEGRARMQKAEEGI 168 (378)
T ss_pred HHHHHHHHHHHHHhcCCCE---EEEEeeccCcchhhHHHHHHHHHHHc-C-CCeEEEEEcCcc---cccHhHHHHHHHHH
Confidence 7788889999999999998 89999999999999999999999974 3 556788899988 67888999999999
Q ss_pred hhhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHHhhhccccccccCCCCccccccccCCcccCCCccccccc
Q psy3432 215 KRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTG 294 (695)
Q Consensus 215 ~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP~P~l~fl~~s 294 (695)
+.|.+++|+++++||++|.++| ..+.+. ..|..+|++|++.+.++|.++|+||.+|.|+.++.+.|-- ...-++...
T Consensus 169 ~~L~e~~D~vividNd~L~~i~-~~~~i~-~af~~~N~iIa~~I~~It~~i~~~G~iN~Df~dv~~vl~~-~G~a~iG~G 245 (378)
T PRK13018 169 ERLREAADTVIVIDNNRLLDIV-PNLPIA-DAFSVADEVIAETVKGITETITKPSLINLDFADVKSVMKG-GGVAMMGVG 245 (378)
T ss_pred HHHHHhCCEEEEEecHHHHHHH-hcCCHH-HHHHHHHHHHHHHHHhhhhhcccCCceecCHHHHHHHhcc-CCEEEEEEE
Confidence 9999999999999999999999 767765 5899999999999999999999999999999999887742 333333222
Q ss_pred cccccccccccccccccHHHHHHhhcCCCCCccccCCCCCCccchhhhhhhhhC--CCChHhHHHHHHHHhhh
Q psy3432 295 YTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQG--EVDPCQVHKSLQRIRER 365 (695)
Q Consensus 295 ~~P~~~~~~~~~~~~~t~~~l~~~l~~~~n~l~~~~~~~~~~~~~ls~~~~~RG--~~~~~~v~~~~~~lk~~ 365 (695)
.+. ..-...+.+++.++. .++.++... .+ ..++.+.| ++...++.+....+++.
T Consensus 246 ~a~----------g~~r~~~Av~~Al~s--pLL~~di~~---A~--~~Lv~I~g~~~l~l~ev~~~~~~i~~~ 301 (378)
T PRK13018 246 EAK----------GQNRAMEAVRAALAN--PLLDVDYRG---AK--GALVHITGGPDLTLKEANEAASRITEE 301 (378)
T ss_pred Eec----------CCcHHHHHHHHHHhC--CCcCCChhh---hc--eEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 111 011234444444442 234444221 11 12233444 67888898888877754
No 44
>PRK09330 cell division protein FtsZ; Validated
Probab=99.84 E-value=1e-21 Score=212.23 Aligned_cols=201 Identities=20% Similarity=0.270 Sum_probs=159.5
Q ss_pred CceeecCCCCCCCCCccccccccchhhhHHhhhhhhhccCCCccc--ccCC-Cceeecc---CCCCCCCCCCcccchhhh
Q psy3432 62 ENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLE--LYNP-ENVYLSK---DGGGAGNNWASGYSQGKK 135 (695)
Q Consensus 62 ~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~~~~~~~---~~~g~g~~~~~Gy~~g~~ 135 (695)
.-.|+|. +|+|+|-.. .+.+.-+...+.-+.|+|.+. ...+ .++++++ .|.|+|++| ..|.+
T Consensus 15 ~IkViGv--GG~G~Nav~------~m~~~~~~~v~fia~NTD~q~L~~~~a~~ki~lG~~~t~GlGaG~~p----e~G~~ 82 (384)
T PRK09330 15 VIKVIGV--GGGGGNAVN------RMIEEGIQGVEFIAANTDAQALLKSKAPVKIQLGEKLTRGLGAGANP----EVGRK 82 (384)
T ss_pred eEEEEEE--CCcHHHHHH------HHHHcCCCCceEEEEeCcHHHHhcCCCCeEEEcCCcccccCCCCCCH----HHHHH
Confidence 3456898 899998776 333333344455666777743 2333 4455544 578888666 47788
Q ss_pred hHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHh
Q psy3432 136 LQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLK 215 (695)
Q Consensus 136 ~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~ 215 (695)
..++..|.||+.+|.||.+ +|+++||||||||.++.++ .+..+|+ +++++|+|.| ...|..+++|||.++|+
T Consensus 83 aaee~~e~I~~~l~~~D~v---fI~AGmGGGTGTGaapvIA-~iake~g---~ltvaVvt~P-F~fEG~~r~~nA~~gL~ 154 (384)
T PRK09330 83 AAEESREEIREALEGADMV---FITAGMGGGTGTGAAPVVA-EIAKELG---ILTVAVVTKP-FSFEGKKRMKQAEEGIE 154 (384)
T ss_pred HHHHHHHHHHHHHcCCCEE---EEEecCCCcccHHHHHHHH-HHHHHcC---CcEEEEEecC-ccccchhHHHHHHHHHH
Confidence 8999999999999999987 9999999999999999555 5555565 4455555544 23889999999999999
Q ss_pred hhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHHhhhccccccccCCCCccccccccCCcc
Q psy3432 216 RLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLI 283 (695)
Q Consensus 216 ~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLv 283 (695)
.|.+++|++|++||++|.+++.+.+.+. ..|+.+|.+|++.+.+++..+++||..|.|+.++.+.|-
T Consensus 155 ~L~~~~D~vIvi~Nd~L~~~~~~~~~l~-~Af~~ad~vL~~~v~~It~~i~~pG~iNvDfaDvk~vm~ 221 (384)
T PRK09330 155 ELRKHVDTLIVIPNDKLLEVVDKKTPLL-DAFKAADDVLRQAVQGITDLITKPGLINLDFADVKTVMS 221 (384)
T ss_pred HHHHHCCEEEEEecHHHHhhccCCCCHH-HHHHHHHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHh
Confidence 9999999999999999999998777765 489999999999999999999999999999999988775
No 45
>KOG2530|consensus
Probab=99.75 E-value=1.8e-18 Score=183.23 Aligned_cols=162 Identities=23% Similarity=0.281 Sum_probs=128.1
Q ss_pred cccCCCceeeccCCCCCCC---CCCcccch--hhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHH
Q psy3432 106 ELYNPENVYLSKDGGGAGN---NWASGYSQ--GKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLA 180 (695)
Q Consensus 106 ~~~~~~~~~~~~~~~g~g~---~~~~Gy~~--g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~ 180 (695)
..|||+..+.+++....+. +++.||.. -....+++.|+||.++|+||.+|||+++..+.+|+| |+++.++|.|+
T Consensus 151 ~~yHp~tl~~l~~~~~d~~a~~~y~iG~d~f~E~s~~eE~~DrLr~~VEECD~lQGFq~l~Did~Gfg-G~as~~le~l~ 229 (483)
T KOG2530|consen 151 NHYHPRTLNPLNGLFQDSGAFDRYSIGYDVFTENSYQEEFCDRLRFYVEECDTLQGFQLLSDIDDGFG-GFASKLLEELQ 229 (483)
T ss_pred hhcCccccccCCccccChHHhhccccchhhhhccchhHHHHHHHHHHHHhcccccceEEEEecCCCch-hHHHHHHHHHH
Confidence 8899999999988655553 34444442 233568999999999999999999999999999999 99999999999
Q ss_pred hhCCCceeEEEEeecCCCCCCccccc------hhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHH
Q psy3432 181 DRFPKKIIQTYSVFPNQDEISDVVVQ------PYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLV 254 (695)
Q Consensus 181 deyp~~~i~~~~v~P~~~~~~e~~v~------~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~i 254 (695)
|||+++.+.+++..|.+...++.... ..|.+|++++|.++|++++|+.--. .++ ...+.-.++
T Consensus 230 DEys~~~v~tw~~~~~p~s~~~s~k~ls~~~~~lN~als~~qLs~~~~l~~PL~~~~-------~~~----~~~~tsA~~ 298 (483)
T KOG2530|consen 230 DEYSKKAVFTWGHNPRPFSQDFSMKRLSNKWLKLNKALSLSQLSQECSLYFPLSTAS-------GLG----DLWETSAKL 298 (483)
T ss_pred HhhcCCceeccccCCCCCCcchhhhhhHHHHHHHHHHHHHHHHhhhcceeecccccc-------ccc----cHHHHHHHH
Confidence 99999999999999965322333333 4679999999999999999984211 111 356778999
Q ss_pred HHhhhccccccccCCCCcccccccc
Q psy3432 255 STIMAVSTSTLRYPSYMNNDLIGLI 279 (695)
Q Consensus 255 a~~i~~~t~~~Rf~g~~n~dl~~l~ 279 (695)
|.++.++|.+.|..+..+.-+.++.
T Consensus 299 a~~~ds~tlptr~~ssS~~~~~d~l 323 (483)
T KOG2530|consen 299 ARAFDSITLPTRLISSSNLRQRDTL 323 (483)
T ss_pred HhhcccccccceecchhHHHHHHHH
Confidence 9999999999998887555444443
No 46
>PF14881 Tubulin_3: Tubulin domain
Probab=99.75 E-value=5.9e-18 Score=165.87 Aligned_cols=151 Identities=25% Similarity=0.370 Sum_probs=116.6
Q ss_pred ccccCCCceeeccCCCCCCCCCCcc-cchhhhh------HHHHHHH-HHHhhcCCCCCCceeEeeecCCCCCCCchHHHH
Q psy3432 105 LELYNPENVYLSKDGGGAGNNWASG-YSQGKKL------QEEIFDI-IDREADGSDSLEGFVLCHSIAGGTGSGMGSYLL 176 (695)
Q Consensus 105 ~~~~~~~~~~~~~~~~g~g~~~~~G-y~~g~~~------~d~~~d~-IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~ll 176 (695)
...|||++++.++.....+..-+.. |..|.+. .++++|+ ||..+|+||.+||||++..+.+|+| |+++.++
T Consensus 17 r~~yhPrSl~~l~~~~~~~~~~~Fd~f~~G~~~f~~~~~~~d~~D~~lR~f~EECD~lQGfQ~~~d~d~gwg-Gfas~~L 95 (180)
T PF14881_consen 17 RVHYHPRSLNQLNDYEHNSPNMPFDTFGVGQELFKSLDYEEDFFDRDLRFFLEECDSLQGFQVLTDVDDGWG-GFASSLL 95 (180)
T ss_pred cceeCCCceEEcCccccCCCCCCcccccchHHHHhhhhhhhHHHHHHHHHHHHHcccccceEEEecCCCchH-hHHHHHH
Confidence 3679999999999976555433333 4444443 3456665 9999999999999999999999999 9999999
Q ss_pred HHHHhhCCCcee-EEEEeecCCCCCCc----cccchhhHHHhHhhhhccCCcceeecChhhHHhhccccCCCCCChHHHh
Q psy3432 177 EHLADRFPKKII-QTYSVFPNQDEISD----VVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQIN 251 (695)
Q Consensus 177 e~L~deyp~~~i-~~~~v~P~~~~~~e----~~v~~yNa~lsl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N 251 (695)
|.|+|||||+.+ +.+++.+....... ...+..|.++++..|.+++++++|+.... +..+..+.-
T Consensus 96 e~L~DEy~k~~i~~~~~~~~~~~~~~~~~~~~~~~~~N~a~s~~~L~~~ssl~vPl~~~~-----------d~~s~~htS 164 (180)
T PF14881_consen 96 EHLRDEYPKKPIIWVWGLRDPSSSSRDAPRKRRLRLLNKALSLSELSEQSSLFVPLSTLS-----------DASSNWHTS 164 (180)
T ss_pred HHHHHHcCCCceEEeecCCCccccccchhhHHHHHHHHHHHHHHHHHhhCCEEEecCCCC-----------cCCCcHHHH
Confidence 999999999996 66666543311111 12356899999999999999999997210 234566899
Q ss_pred HHHHHhhhcccccccc
Q psy3432 252 SLVSTIMAVSTSTLRY 267 (695)
Q Consensus 252 ~~ia~~i~~~t~~~Rf 267 (695)
.++|.+|.++|.+.|.
T Consensus 165 ai~A~aidT~TLp~RL 180 (180)
T PF14881_consen 165 AILAAAIDTITLPYRL 180 (180)
T ss_pred HHHHHHHHhccccCCC
Confidence 9999999999999884
No 47
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=99.69 E-value=3.3e-17 Score=176.71 Aligned_cols=152 Identities=34% Similarity=0.593 Sum_probs=132.6
Q ss_pred cchhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhcccc
Q psy3432 438 DDSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPK 517 (695)
Q Consensus 438 ~Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (695)
..++..+|.+|++..+..+..+||+|.+|.|++++.+||||||++||++++|+|+..... ...
T Consensus 177 ~~~~~~~N~~ia~~i~~~t~~~r~~g~~n~d~~~~~~~l~p~p~~~~~~~~~~p~~~~~~-~~~---------------- 239 (328)
T cd00286 177 KPTFDHINELLATALSSLTTPLRFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGS-ATP---------------- 239 (328)
T ss_pred CCCHHHHHHHHHhhccccccccccCccccchHHHHhhhcCCCCCceeeccccCccccccc-ccc----------------
Confidence 368999999999999999999999999999999999999999999999999999974321 111
Q ss_pred chhhhhcccccHHHHHHHhcCCCCceeeeCCCCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcccCcccCCCCceeE
Q psy3432 518 NMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQV 597 (695)
Q Consensus 518 ~~~~~~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~~~fv~W~p~~~kv 597 (695)
++.++.+++++++++.++++.+++. .++|+++++++||+.+.+++.+.+.+++++..+. +|+|+++++
T Consensus 240 -------~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~rG~~~~~~v~~~~~~l~~~~~~~--~w~~~~~~~ 307 (328)
T cd00286 240 -------TTLRVAELVRQALRSKNQMVVCDPT---HGGYIAALLLVRGPVSPSEVREGIARVAPRTSHL--SWSPPGIKV 307 (328)
T ss_pred -------ccCCHHHHHHHHhCCCCeeeccCCC---ccchHHHHHHHhCCCChHHHHHHHHHHHHhCCcC--CcCCCCEeE
Confidence 2246788888999999999998886 6999999999999999999999999999876555 999999999
Q ss_pred EeccCCCCCCCCCceEEEeeccc
Q psy3432 598 ALSKKSPYVPTSHRVSGLMLANH 620 (695)
Q Consensus 598 ~~~~~~p~~p~~~~~s~~~laNs 620 (695)
++|..||. ...+.++++|+|+
T Consensus 308 ~~~~~~~~--~~~~~~~~~l~Ns 328 (328)
T cd00286 308 GVSPTPPA--SEHKVSALLLSNS 328 (328)
T ss_pred eecCCCCC--CCcCeEEEEeccC
Confidence 99998753 1468899999996
No 48
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=99.46 E-value=8.6e-14 Score=147.76 Aligned_cols=202 Identities=19% Similarity=0.253 Sum_probs=166.3
Q ss_pred CCCceeecCCCCCCCCCccccccccchhhhHHhhhhhhhccCCCcccccC---CCceeecc---CCCCCCCCCCcc-cch
Q psy3432 60 NPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYN---PENVYLSK---DGGGAGNNWASG-YSQ 132 (695)
Q Consensus 60 ~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~---~~~g~g~~~~~G-y~~ 132 (695)
.+.-.++|. +|+|||-.. .+.++-.+..+..+.|+|.+.+.+ ++++.++. .|.|+| + ...
T Consensus 11 ~~~I~VIGv--Gg~G~n~v~------~m~~~~~~gve~ia~nTD~q~L~~~~a~~ki~iG~~~t~GlGaG-----a~P~v 77 (338)
T COG0206 11 KARIKVIGV--GGAGGNAVN------RMIEEGVEGVEFIAINTDAQALKSSKADRKILIGESITRGLGAG-----ANPEV 77 (338)
T ss_pred CceEEEEEe--CCcchHHHH------HHHHhhhCceEEEEeccCHHHHhccccCeEEEeccceeeccCCC-----CCcHH
Confidence 344567898 999998776 566666666777888999875553 34555553 367777 4 568
Q ss_pred hhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHH
Q psy3432 133 GKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLL 212 (695)
Q Consensus 133 g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~l 212 (695)
|.+..++..+.|++.++..| -++++.++|||||+|.++.+++.+++ .+...++++++|+. .|.....-|+.-
T Consensus 78 G~~aAee~~~~I~~~l~g~d---mvfitaG~GGGTGtGaaPVvakiake--~g~ltvavvt~Pf~---~EG~~r~~~A~~ 149 (338)
T COG0206 78 GRAAAEESIEEIEEALKGAD---MVFVTAGMGGGTGTGAAPVVAEIAKE--LGALTVAVVTLPFS---FEGSPRMENAEE 149 (338)
T ss_pred HHHHHHHHHHHHHHHhccCC---eEEEEeeecCCccccccHHHHHHHHh--cCCcEEEEEEecch---hcCchHHHHHHH
Confidence 88889999999999988777 57999999999999999999999998 37788899999988 677778899999
Q ss_pred hHhhhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHHhhhccccccccCCCCccccccccCCccc
Q psy3432 213 TLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIP 284 (695)
Q Consensus 213 sl~~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~i~~~t~~~Rf~g~~n~dl~~l~~nLvP 284 (695)
++..|.+++|.+|+++|+.|.+... ... -...|...|.++++.+.+++..+--||..|.|+.++.+.+-.
T Consensus 150 gi~~L~~~~DtlIvi~Ndkll~~~~-~~~-~~~Af~~ad~vl~~~v~~i~e~I~~~glinvDfaDv~~vm~~ 219 (338)
T COG0206 150 GIEELREVVDTLIVIPNDKLLKGKD-KTP-IAEAFNEADDVLGNAVKGITELITKPGLVNVDFADVRTVMKG 219 (338)
T ss_pred HHHHHHHhCCcEEEEecHHHHhccC-ccc-HHHHHHHHHHHHHHHHHHHHHHhccCceEeecHHHHHHHHhc
Confidence 9999999999999999999988765 332 224688899999999999999999999999999999987766
No 49
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=99.04 E-value=6.2e-11 Score=108.31 Aligned_cols=114 Identities=25% Similarity=0.378 Sum_probs=91.5
Q ss_pred cCccccccccCCcCCCcccccccccCCcchhhhhhheecchhhHHHHhhccccchhhhhcccccHHHHHH--HhcCCCCc
Q psy3432 465 MNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMR--RLLQPKNM 542 (695)
Q Consensus 465 ln~dl~~i~tnLVP~PrlhFl~~s~aPl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~n~ 542 (695)
+|+|++++.+||+|+| |++++|+|+... .+. .+..++.. .+|++.++
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~-----~~~-----------------------~~a~~~~~~~~l~~~~~~ 49 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE-----NRA-----------------------LEAAELAISSPLLEPSNI 49 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC-----ChH-----------------------HHHHHHHHhCcccCCcch
Confidence 5899999999999999 999999999642 111 23455656 78899999
Q ss_pred eeeeCCCCCCCCeeeeEeeeccccCCchhHHHHHHHHHHhcc-cCcccCCC-CceeEEeccCCCCCCCCCceEEEeecc-
Q psy3432 543 MVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKL-VNFIPWSP-AGIQVALSKKSPYVPTSHRVSGLMLAN- 619 (695)
Q Consensus 543 ~~~~~~~~~~~~~yls~~~~~RG~v~~~~v~~~i~~ik~~~~-~~fv~W~p-~~~kv~~~~~~p~~p~~~~~s~~~laN- 619 (695)
+..+++. .||++.. +++.+++.+++.+++++.. ..|+.|+| .+++++ .++++++|
T Consensus 50 ~~a~~~~-----~~l~~~~----~~~~~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~~-------------~~~~~i~ni 107 (120)
T smart00865 50 MGAKGVL-----VNITGGP----DLTLKEVNEAMERIREKADPDAFIIWGPVIDEELG-------------GDEIRVTVI 107 (120)
T ss_pred hhcCceE-----EEEEcCC----CCCHHHHHHHHHHHHHhcCCCceEEEccccCCcCC-------------CCcEEEEEE
Confidence 9887764 3888875 7999999999999998877 88999999 555422 45789999
Q ss_pred cchHHHHHHHHh
Q psy3432 620 HTNISSLFDRCL 631 (695)
Q Consensus 620 sTsI~~~f~~i~ 631 (695)
+|+|.+.|+++.
T Consensus 108 ~t~i~~~~~~~~ 119 (120)
T smart00865 108 ATGIGSAFKRLS 119 (120)
T ss_pred ecccCccccccC
Confidence 999999998864
No 50
>smart00865 Tubulin_C Tubulin/FtsZ family, C-terminal domain. This domain is found in the tubulin alpha, beta and gamma chains, as well as the bacterial FtsZ family of proteins. These proteins are GTPases and are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea. This is the C-terminal domain.
Probab=98.52 E-value=4.8e-08 Score=89.15 Aligned_cols=111 Identities=23% Similarity=0.370 Sum_probs=87.5
Q ss_pred CccccccccCCcccCCCccccccccccccccccccccccccHHHHHH--hhcCCCCCccccCCCCCCccchhhhhhhhhC
Q psy3432 271 MNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMR--RLLQPKNMMVSTAPDRMSQHCYMSILNIIQG 348 (695)
Q Consensus 271 ~n~dl~~l~~nLvP~P~l~fl~~s~~P~~~~~~~~~~~~~t~~~l~~--~l~~~~n~l~~~~~~~~~~~~~ls~~~~~RG 348 (695)
+|.|+.++.++|+|+| |+.++++|.... .+..+..++.. .|+++.+++..+++. .|+++..
T Consensus 1 in~D~~dl~~~L~p~~---~~~~~~~~~~~~-----~~~~~a~~~~~~~~l~~~~~~~~a~~~~-----~~l~~~~---- 63 (120)
T smart00865 1 INVDFADVKTVMVPMG---FAMMGIGPASGE-----NRALEAAELAISSPLLEPSNIMGAKGVL-----VNITGGP---- 63 (120)
T ss_pred CCCchHHHHHhccCCC---eEEEEEEEecCC-----ChHHHHHHHHHhCcccCCcchhhcCceE-----EEEEcCC----
Confidence 4789999999999999 999999999752 34456777777 889998888776542 2777765
Q ss_pred CCChHhHHHHHHHHhhhcc-cCceecCC-CCceEEEeecCCCcCCCCceeEeeecc-chhhHHhhh
Q psy3432 349 EVDPCQVHKSLQRIRERKL-VNFIPWSP-AGIQVALSKKSPYVPTSHRVSGLMLAN-HTNISSGIS 411 (695)
Q Consensus 349 ~~~~~~v~~~~~~lk~~~~-~~fv~W~p-~~~~v~~~~~~p~~~~~~~~s~~~lsN-stsI~~~~~ 411 (695)
++...++.+++.+++++.. ..|+.|+| ...+++ .++++++| +|+|...|+
T Consensus 64 ~~~~~ev~~~~~~i~~~~~~~~~v~w~~~~~~~~~-------------~~~~~i~ni~t~i~~~~~ 116 (120)
T smart00865 64 DLTLKEVNEAMERIREKADPDAFIIWGPVIDEELG-------------GDEIRVTVIATGIGSAFK 116 (120)
T ss_pred CCCHHHHHHHHHHHHHhcCCCceEEEccccCCcCC-------------CCcEEEEEEecccCcccc
Confidence 7889999999999988765 78999998 444321 34688999 999988875
No 51
>PF13809 Tubulin_2: Tubulin like
Probab=96.47 E-value=0.011 Score=64.62 Aligned_cols=105 Identities=25% Similarity=0.239 Sum_probs=67.5
Q ss_pred eeccCCCCCCCCCCcc---c-chhhhhHHHHHHHHHH-----hhcCC-CCCCceeEeeecCCCCCCCchHHHHHHHHhhC
Q psy3432 114 YLSKDGGGAGNNWASG---Y-SQGKKLQEEIFDIIDR-----EADGS-DSLEGFVLCHSIAGGTGSGMGSYLLEHLADRF 183 (695)
Q Consensus 114 ~~~~~~~g~g~~~~~G---y-~~g~~~~d~~~d~IR~-----~~E~c-D~lqgf~i~~Sl~GGTGSGlgs~lle~L~dey 183 (695)
.......|+|..++.| + ..-.++.+.+.+.++. ..... +.---++|+.||+||||||+---++-.||+.+
T Consensus 97 ~~~~~~~GAgq~R~~GRla~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~V~Vv~SlaGGTGSG~~lDia~~lr~~~ 176 (345)
T PF13809_consen 97 NNTPLSAGAGQIRALGRLAFFSNYQEIREALEAALDNFMQERLGGKGGGGGLNVFVVGSLAGGTGSGMFLDIAYLLRDIL 176 (345)
T ss_pred cCCchhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhccccCCCCCcEEEEEEecCCccchhHHHHHHHHHHHHh
Confidence 4567789999999999 2 2444555566666652 11122 11113788999999999999888888888865
Q ss_pred -----CCceeEEEEeecCCCCC--CccccchhhHHHhHhhhh
Q psy3432 184 -----PKKIIQTYSVFPNQDEI--SDVVVQPYNSLLTLKRLT 218 (695)
Q Consensus 184 -----p~~~i~~~~v~P~~~~~--~e~~v~~yNa~lsl~~l~ 218 (695)
....+..+.++|..... .+.....-|+.=+|.+|.
T Consensus 177 ~~~~~~~~~i~~~~~lP~~f~~~~~~~~~~~aNayAAL~EL~ 218 (345)
T PF13809_consen 177 KQPGQDNPRIYGFFVLPDAFPSIPGGGERVRANAYAALKELD 218 (345)
T ss_pred hcccCCCceEEEEEECCcccccCCcchhhhhhHHHHHHHHHH
Confidence 45568899999974210 111223456665665553
No 52
>PF10644 Misat_Tub_SegII: Misato Segment II tubulin-like domain; InterPro: IPR019605 The misato protein contains three distinct, conserved domains, segments I, II and III and is involved in the regulation of mitochondrial distribution and morphology []. This entry represents misato segment II. Segments I and III are common to tubulins (IPR003008 from INTERPRO), but segment II aligns with myosin heavy chain sequences from Drosophila melanogaster (Fruit fly, P05661 from SWISSPROT), rabbit (P04460 from SWISSPROT), and human. Segment II of misato is a major contributor to its greater length compared with the various tubulins. The most significant sequence similarities to this 54-amino acid region are from a motif found in the heavy chains of myosins from different organisms. A comparison of segment II with the vertebrate myosin heavy chains reveals that it is homologous to a myosin peptide in the hinge region linking the S2 and LMM domains. Segment II also contains heptad repeats which are characteristic of the myosin tail alpha-helical coiled-coils [].
Probab=91.38 E-value=0.17 Score=46.17 Aligned_cols=71 Identities=15% Similarity=0.235 Sum_probs=42.7
Q ss_pred cccccccCC----CCCCccceeEEecCCCceeeeeeccCCCCCCCCCceeecCCCCCCCCCccccccccchhhhHHhhhh
Q psy3432 20 AGNNWASGA----DDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDII 95 (695)
Q Consensus 20 ~~~~~f~e~----~~~~~~pR~v~vD~ep~vi~~~~~~~~~~lf~~~~~~~~~~~~g~gnn~a~g~~~~~~~~~~~~~~~ 95 (695)
..+++|++. +..+|+||+|++|+-...-..-. ++.+|+.+ .........|. |...+.++.+..++.+
T Consensus 39 ~~dvlfR~g~~~~g~~TYtPRlL~~Dlkg~lGsL~~---~g~ly~~~-----~~~~~~~~~w~-g~~~~~~~~~~~ks~y 109 (115)
T PF10644_consen 39 DHDVLFREGITLSGTVTYTPRLLLFDLKGGLGSLRK---YGYLYEQD-----DSAPDNQSTWD-GKVEVQRQPPIPKSEY 109 (115)
T ss_pred CCceEEecccCcCCCeeECCcEEEEecCCCcCcccc---cccccccC-----cccccccccCC-CceEEEeCCCCCCCHH
Confidence 468999984 55799999999999887554332 23344311 00123344555 5555666666666666
Q ss_pred hhhc
Q psy3432 96 DREA 99 (695)
Q Consensus 96 ~~~~ 99 (695)
+++.
T Consensus 110 q~~L 113 (115)
T PF10644_consen 110 QQDL 113 (115)
T ss_pred HHHh
Confidence 6554
No 53
>PLN02847 triacylglycerol lipase
Probab=59.09 E-value=36 Score=39.66 Aligned_cols=60 Identities=18% Similarity=0.268 Sum_probs=41.7
Q ss_pred c-cchhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHh--hCCCceeEEEE
Q psy3432 129 G-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLAD--RFPKKIIQTYS 192 (695)
Q Consensus 129 G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~d--eyp~~~i~~~~ 192 (695)
| |.....+.+.+...|++.++++...+=+++=||||||+. +.+.-.|++ .|++..+++|+
T Consensus 225 Gml~AArwI~~~i~~~L~kal~~~PdYkLVITGHSLGGGVA----ALLAilLRe~~~fssi~CyAFg 287 (633)
T PLN02847 225 GMVAAARWIAKLSTPCLLKALDEYPDFKIKIVGHSLGGGTA----ALLTYILREQKEFSSTTCVTFA 287 (633)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHCCCCeEEEeccChHHHHH----HHHHHHHhcCCCCCCceEEEec
Confidence 6 445566777788888888888877665666699999876 334444454 56777766666
No 54
>COG1528 Ftn Ferritin-like protein [Inorganic ion transport and metabolism]
Probab=56.46 E-value=5.6 Score=38.59 Aligned_cols=45 Identities=18% Similarity=0.270 Sum_probs=31.6
Q ss_pred chHHHHHHHHhc---------------------ccccccccccccCCcCccchhhHHHHHHHHHHHHHHHHhccC
Q psy3432 621 TNISSLFDRCLT---------------------GKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATR 674 (695)
Q Consensus 621 TsI~~~f~~i~~---------------------~~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li~eY~~~~~ 674 (695)
+++.++|+.++. |.--.||+||++|..++ ...+.++++.++-+..
T Consensus 81 ~s~~e~f~~tlehEq~vt~~I~~L~~~a~~~kD~~T~nFLqWfv~EQ~eE---------e~l~~~I~d~~~~ag~ 146 (167)
T COG1528 81 SSLKELFEKTLEHEQKVTSSINELAEVAREEKDYATFNFLQWFVAEQVEE---------EKLFKTILDKLELAGN 146 (167)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchhHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHcCC
Confidence 367888888741 57789999999998764 3455566666665543
No 55
>PF06908 DUF1273: Protein of unknown function (DUF1273); InterPro: IPR024718 This entry represents a functionally uncharacterised domain.; PDB: 2NX2_A.
Probab=56.13 E-value=11 Score=37.25 Aligned_cols=107 Identities=12% Similarity=0.088 Sum_probs=55.9
Q ss_pred hHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHh
Q psy3432 136 LQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLK 215 (695)
Q Consensus 136 ~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~ 215 (695)
+...+.+.|++.+|+ .+. -++.+.+-|+- -+++-++-.|+.+||...+ .+++|+.. .+.. -+-..-.-+.
T Consensus 27 ik~~L~~~i~~lie~--G~~--~fi~GgalG~D-~waae~vl~LK~~yp~ikL--~~v~Pf~~-q~~~--W~~~~q~~y~ 96 (177)
T PF06908_consen 27 IKKALKKQIIELIEE--GVR--WFITGGALGVD-LWAAEVVLELKKEYPEIKL--ALVLPFEN-QGNN--WNEANQERYQ 96 (177)
T ss_dssp HHHHHHHHHHHHHTT--T----EEEE---TTHH-HHHHHHHHTTTTT-TT-EE--EEEESSB--TTTT--S-HHHHHHHH
T ss_pred HHHHHHHHHHHHHHC--CCC--EEEECCcccHH-HHHHHHHHHHHhhhhheEE--EEEEcccc-hhhc--CCHHHHHHHH
Confidence 456666777777774 333 23333344443 3456666678999997655 67888762 1221 1223445567
Q ss_pred hhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHHhhhcc
Q psy3432 216 RLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 261 (695)
Q Consensus 216 ~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~i~~~ 261 (695)
.|.+.||-++++..+.... ...|..=|+.+...-..+
T Consensus 97 ~il~~aD~v~~vs~~~Y~~---------~~~~~~rn~fMvdhsd~~ 133 (177)
T PF06908_consen 97 SILEQADFVVVVSERPYYS---------PGQLQKRNRFMVDHSDGL 133 (177)
T ss_dssp HHHHH-SEEEESSSSB------------HHHHHHHHHHHHHHSSEE
T ss_pred HHHHhCCEEEEccCCCCCC---------HHHHHHHhHHHHhCCCeE
Confidence 7788889888886542221 112556677666544443
No 56
>PRK14484 phosphotransferase mannnose-specific family component IIA; Provisional
Probab=47.78 E-value=14 Score=34.30 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=29.7
Q ss_pred HHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhh
Q psy3432 137 QEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADR 182 (695)
Q Consensus 137 ~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~de 182 (695)
.+...++|+..+++++. +|++++..| |||=. -....+|.+.++
T Consensus 41 ~gt~~~~i~~ai~~~~~-dGVlVltDL-Gssp~-n~~~a~e~~~~~ 83 (124)
T PRK14484 41 IGTSFDQIQEAIEKNES-DGVLIFFDL-GSAEM-NAEMAIEMLDGE 83 (124)
T ss_pred ccchHHHHHHHHHhcCc-CCeEEEEeC-CChHH-HHHHHHHhcCCC
Confidence 44567888888888888 999999999 77542 133344555433
No 57
>PF08259 Periviscerokin: Periviscerokinin family; InterPro: IPR013231 Perviscerokinin neuropeptides are found in the abdominal perisympathetic organs of insects. They mediate visceral muscle contractile activity (myotropic activity). CAPA, which are in the periviscerokinin and pyrokinin peptide families, has potential medical importance. This is due to its myotropic effects on, for example, heart muscles and due to its occurrence in the Ixodoidea (ticks), which are important vectors in the transmission of many animal diseases []. These peptides also have a strong diuretic or anti-diuretic effect, suggesting they have significant medical implications [].
Probab=46.05 E-value=10 Score=19.83 Aligned_cols=9 Identities=56% Similarity=0.999 Sum_probs=7.0
Q ss_pred cCCcCCCcc
Q psy3432 474 APLIPTPRL 482 (695)
Q Consensus 474 tnLVP~Prl 482 (695)
+-||||||.
T Consensus 3 sGlI~fpR~ 11 (11)
T PF08259_consen 3 SGLIPFPRV 11 (11)
T ss_pred ccccccCCC
Confidence 468999984
No 58
>PF03610 EIIA-man: PTS system fructose IIA component; InterPro: IPR004701 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for IIA and IIB components.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane; PDB: 3GDW_B 2JZN_A 1VSQ_A 2JZO_B 1VRC_A 1PDO_A 3GX1_A 3B48_B 3BED_B 3IPR_C ....
Probab=43.79 E-value=21 Score=32.18 Aligned_cols=33 Identities=15% Similarity=0.350 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHhhcCCCCCCceeEeeecCCCCC
Q psy3432 136 LQEEIFDIIDREADGSDSLEGFVLCHSIAGGTG 168 (695)
Q Consensus 136 ~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTG 168 (695)
-.+.+.+++++.+++.+.-+|++++.+++|||-
T Consensus 39 ~~~~~~~~l~~~i~~~~~~~~vlil~Dl~ggsp 71 (116)
T PF03610_consen 39 SIEDFEEKLEEAIEELDEGDGVLILTDLGGGSP 71 (116)
T ss_dssp CHHHHHHHHHHHHHHCCTTSEEEEEESSTTSHH
T ss_pred CHHHHHHHHHHHHHhccCCCcEEEEeeCCCCcc
Confidence 456677777777777777889999999999865
No 59
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=42.58 E-value=6.5 Score=43.09 Aligned_cols=51 Identities=14% Similarity=0.082 Sum_probs=45.1
Q ss_pred ccchhhhHhHHHHHhhccCCCCCCC-----ccccCccccccccCCcCCCcccccccccC
Q psy3432 437 LDDSRREVDELVQEYCAATRPDYLY-----PSYMNNDLIGLIAPLIPTPRLHFLMTGYT 490 (695)
Q Consensus 437 F~Ea~~~l~~li~eY~~~~t~~~r~-----~g~ln~dl~~i~tnLVP~PrlhFl~~s~a 490 (695)
+.+++..+|+++.+-....+...|| +|.+|+|+.++.++|-+. ++.+.+|+
T Consensus 179 ~~~~f~~~N~~Ia~~i~~l~~~~r~~~~~~~g~invD~~dv~~~L~~~---G~~~iG~g 234 (349)
T cd02202 179 VEEAYDRINEEIARRIGLLLRAGEANAGDSVGESVLDASEVINTLSGG---GFATIGYA 234 (349)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhhcccCCCCCeEeccHHHHHHHhccC---CeEEEEEE
Confidence 4589999999999999999988988 999999999999999875 77777775
No 60
>PF12953 DUF3842: Domain of unknown function (DUF3842); InterPro: IPR024208 This family of proteins has no known function.
Probab=41.11 E-value=30 Score=32.14 Aligned_cols=49 Identities=27% Similarity=0.402 Sum_probs=31.6
Q ss_pred CCCCCchHHHHHHHHhhCCC-ceeEEEEeecCCCCCCccccchhhHHHhHhhhhccCCcceeecC
Q psy3432 166 GTGSGMGSYLLEHLADRFPK-KIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDN 229 (695)
Q Consensus 166 GTGSGlgs~lle~L~deyp~-~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~~l~e~sd~~i~~dN 229 (695)
|=|.|+|..+++.||+++|+ ..+++... |++=+-.-|..-+|-.--=+|
T Consensus 7 GQGGGiG~~iv~~lr~~~~~~~eI~AlGT---------------Na~AT~~MlKaGA~~gATGEN 56 (131)
T PF12953_consen 7 GQGGGIGKQIVEKLRKELPEEVEIIALGT---------------NAIATSAMLKAGANEGATGEN 56 (131)
T ss_pred CCCChhHHHHHHHHHHhCCCCcEEEEEeh---------------hHHHHHHHHHcCCCCcccccc
Confidence 44558999999999999998 55554432 555555555555554333333
No 61
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=39.32 E-value=27 Score=40.12 Aligned_cols=52 Identities=13% Similarity=0.184 Sum_probs=42.3
Q ss_pred EeecccchHHHHHHHHhcc-----cccccccccccCCcCccchhhHHHHHHHHHHHHHHHHh
Q psy3432 615 LMLANHTNISSLFDRCLTG-----KREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCA 671 (695)
Q Consensus 615 ~~laNsTsI~~~f~~i~~~-----~krAFlHwY~~eGm~~~~~~ef~ea~e~v~~li~eY~~ 671 (695)
.-|.|++++.+.++++... -+| +|.|...|+| ++||+|+.+.+.++.+.|++
T Consensus 437 a~l~ss~~l~~~l~~l~~~~~kl~~~r--~~~~~~~g~e---~de~~e~le~L~~~~~~Y~~ 493 (493)
T cd06060 437 AALQSSPSLGEMLESLHRQLSKLDLRR--KASFFESGLE---EDEYKELLEQLLDLAECYED 493 (493)
T ss_pred hhhcCchHHHHHHHHHHHHHHhhhhHh--hhcccccccC---HHHHHHHHHHHHHHHHhhcC
Confidence 4578999999999998752 233 4578888988 69999999999999999974
No 62
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=38.83 E-value=9.8 Score=40.83 Aligned_cols=39 Identities=10% Similarity=0.067 Sum_probs=36.1
Q ss_pred cchhhhHhHHHHHhhccCCCCCCCccccCccccccccCC
Q psy3432 438 DDSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPL 476 (695)
Q Consensus 438 ~Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnL 476 (695)
.+++..+++++.+-....+...|+||.+|+|++++.+.|
T Consensus 168 ~~af~~~N~~ia~~i~~it~~i~~~g~invD~~dv~~~l 206 (303)
T cd02191 168 EGAFDHADEVLVRAVGGLFGAIEIEGEINVDFADVKNVM 206 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCCcccCCHHHHHHHh
Confidence 479999999999999999999999999999999997755
No 63
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=36.42 E-value=9.7 Score=40.84 Aligned_cols=42 Identities=12% Similarity=0.137 Sum_probs=37.6
Q ss_pred ccchhhhHhHHHHHhhccCCCCCCCccccCccccccccCCcC
Q psy3432 437 LDDSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIP 478 (695)
Q Consensus 437 F~Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnLVP 478 (695)
+.+++..+++++++-....+..+|++|.+|+|+.++.+.|-.
T Consensus 168 i~~af~~~n~~ia~~i~~it~~~~~~g~invD~~dv~~vl~~ 209 (304)
T cd02201 168 LLEAFKLADDVLAQAVKGISDLITKPGLINLDFADVKTVMKN 209 (304)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCccccCCHHHHHHHhcc
Confidence 457899999999999999999999999999999999887653
No 64
>cd00006 PTS_IIA_man PTS_IIA, PTS system, mannose/sorbose specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation. IIA subunits receive phosphoryl groups from HPr and transfer them to IIB subunits, which in turn phosphorylate the substrate.
Probab=34.42 E-value=45 Score=30.41 Aligned_cols=32 Identities=22% Similarity=0.416 Sum_probs=25.1
Q ss_pred HHHHHHHHHHhhcCCCCCCceeEeeecCCCCC
Q psy3432 137 QEEIFDIIDREADGSDSLEGFVLCHSIAGGTG 168 (695)
Q Consensus 137 ~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTG 168 (695)
.+.+.++|++.+++.+.-+|++++.++-|||=
T Consensus 40 ~~~~~~~i~~~i~~~~~~~~viil~Dl~GGSp 71 (122)
T cd00006 40 PDDLLEKIKAALAELDSGEGVLILTDLFGGSP 71 (122)
T ss_pred HHHHHHHHHHHHHHhCCCCcEEEEEeCCCCCH
Confidence 45666777777777777789999999999975
No 65
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=32.16 E-value=48 Score=33.79 Aligned_cols=27 Identities=30% Similarity=0.569 Sum_probs=21.7
Q ss_pred EeeecCCCCCCCchHHHHHHHHhhCCCc
Q psy3432 159 LCHSIAGGTGSGMGSYLLEHLADRFPKK 186 (695)
Q Consensus 159 i~~Sl~GGTGSGlgs~lle~L~deyp~~ 186 (695)
++=+++||+|||- +-+++.|.+.++..
T Consensus 9 iiIgIaG~SgSGK-TTva~~l~~~~~~~ 35 (218)
T COG0572 9 IIIGIAGGSGSGK-TTVAKELSEQLGVE 35 (218)
T ss_pred EEEEEeCCCCCCH-HHHHHHHHHHhCcC
Confidence 4557999999998 66788888888755
No 66
>TIGR00824 EIIA-man PTS system, mannose/fructose/sorbose family, IIA component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine, N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IIA components.
Probab=31.99 E-value=57 Score=29.60 Aligned_cols=33 Identities=18% Similarity=0.219 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhhcCCCCCCceeEeeecCCCCCC
Q psy3432 137 QEEIFDIIDREADGSDSLEGFVLCHSIAGGTGS 169 (695)
Q Consensus 137 ~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGS 169 (695)
.+++.+++++.+++.+.=+|++|+.++-|||=.
T Consensus 41 ~~~~~~~l~~~i~~~~~~~~vivltDl~GGSp~ 73 (116)
T TIGR00824 41 AETLQEKYNAALADLDTEEEVLFLVDIFGGSPY 73 (116)
T ss_pred HHHHHHHHHHHHHhcCCCCCEEEEEeCCCCCHH
Confidence 566777788777777666899999999999863
No 67
>cd00741 Lipase Lipase. Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation", the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=31.56 E-value=68 Score=30.10 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=33.3
Q ss_pred c-cchhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhh
Q psy3432 129 G-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADR 182 (695)
Q Consensus 129 G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~de 182 (695)
| |.....+...+...+++...++..-+-+++=||+||+. +..+...++..
T Consensus 2 Gf~~~~~~~~~~i~~~~~~~~~~~p~~~i~v~GHSlGg~l----A~l~a~~~~~~ 52 (153)
T cd00741 2 GFYKAARSLANLVLPLLKSALAQYPDYKIHVTGHSLGGAL----AGLAGLDLRGR 52 (153)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHCCCCeEEEEEcCHHHHH----HHHHHHHHHhc
Confidence 5 44666777788888877766555555566669998874 44555556554
No 68
>PRK13018 cell division protein FtsZ; Provisional
Probab=30.87 E-value=17 Score=40.25 Aligned_cols=40 Identities=20% Similarity=0.280 Sum_probs=35.9
Q ss_pred ccchhhhHhHHHHHhhccCCCCCCCccccCccccccccCC
Q psy3432 437 LDDSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPL 476 (695)
Q Consensus 437 F~Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnL 476 (695)
+.+++..+++++.+-....+..+|+||.+|.|+.++.+-|
T Consensus 195 i~~af~~~N~iIa~~I~~It~~i~~~G~iN~Df~dv~~vl 234 (378)
T PRK13018 195 IADAFSVADEVIAETVKGITETITKPSLINLDFADVKSVM 234 (378)
T ss_pred HHHHHHHHHHHHHHHHHhhhhhcccCCceecCHHHHHHHh
Confidence 4479999999999999999999999999999999987643
No 69
>PF00710 Asparaginase: Asparaginase; InterPro: IPR006034 Asparaginase, which is found in various plant, animal and bacterial cells, catalyses the deamination of asparagine to yield aspartic acid and an ammonium ion, resulting in a depletion of free circulatory asparagine in plasma []. The enzyme is effective in the treatment of human malignant lymphomas, which have a diminished capacity to produce asparagine synthetase: in order to survive, such cells absorb asparagine from blood plasma [, ] - if Asn levels have been depleted by injection of asparaginase, the lymphoma cells die. Glutaminase, a similar enzyme, catalyses the deaminination of glutamine to glutamic acid and an ammonium ion []. Both enzymes are homotetramers []: two threonine residues in the N-terminal half of the proteins are involved in the catalytic activity.; GO: 0006520 cellular amino acid metabolic process; PDB: 1HFW_C 1HG1_B 1JSL_C 1HFK_A 1JSR_C 1HFJ_C 1HG0_D 1O7J_A 1ZQ1_A 1JJA_D ....
Probab=29.10 E-value=1.3e+02 Score=32.48 Aligned_cols=93 Identities=20% Similarity=0.249 Sum_probs=51.5
Q ss_pred cchhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCC-CchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchh
Q psy3432 130 YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGS-GMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPY 208 (695)
Q Consensus 130 y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGS-Glgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~y 208 (695)
-....+.+.++.+.|++..++ .+||+|+| ||-+ -.++..+..+-+..+|-.+++=+..|......|....-+
T Consensus 52 ~~~t~~~~~~la~~i~~~~~~---~~GvVVtH----GTDTme~tA~~Ls~~l~~l~kPVVlTGa~~P~~~~~sDg~~NL~ 124 (313)
T PF00710_consen 52 SDMTPEDWLELARAIQAALDD---YDGVVVTH----GTDTMEETAFFLSLLLDNLDKPVVLTGAMRPLSAPGSDGPRNLY 124 (313)
T ss_dssp GG--HHHHHHHHHHHHHHHTT---CSEEEEE------STTHHHHHHHHHHHEES-SSEEEEE--SS-TTSTT-SHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHHHh---cCeEEEec----CchHHHHHHHHHHHHhcCCCCCEEEeCCcCCCcCCCCccHHHHH
Confidence 346678888888999888854 88999999 5553 224445554444445667777788886622245444444
Q ss_pred hHHHhHhhhhccCCcceeecCh
Q psy3432 209 NSLLTLKRLTLNADCVVVLDNT 230 (695)
Q Consensus 209 Na~lsl~~l~e~sd~~i~~dN~ 230 (695)
+++....+-. .....++|+++
T Consensus 125 ~Av~~A~~~~-~~GV~v~f~~~ 145 (313)
T PF00710_consen 125 DAVRVAASPA-GPGVLVVFNGR 145 (313)
T ss_dssp HHHHHHHSGG-TSSEEEEETTE
T ss_pred HHHHHHhccc-CCceEEEeCCC
Confidence 4444433333 55666666655
No 70
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=28.51 E-value=17 Score=39.81 Aligned_cols=39 Identities=15% Similarity=0.210 Sum_probs=35.3
Q ss_pred cchhhhHhHHHHHhhccCCCCCCCccccCccccccccCC
Q psy3432 438 DDSRREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPL 476 (695)
Q Consensus 438 ~Ea~~~l~~li~eY~~~~t~~~r~~g~ln~dl~~i~tnL 476 (695)
.+++..+++++.+-....+..+|+||.+|.|+.++.+-|
T Consensus 185 ~~af~~~N~iia~~i~~it~~ir~~g~iNvDf~dv~~vl 223 (349)
T TIGR00065 185 NDAFKVADDVLVRAVKGISELITKPGLINIDFADVRAVM 223 (349)
T ss_pred HHHHHHHHHHHHHHHHhHHHhhccCCcCcCCHHHHHHHH
Confidence 469999999999999999999999999999999987633
No 71
>PRK13660 hypothetical protein; Provisional
Probab=28.20 E-value=1.7e+02 Score=29.09 Aligned_cols=108 Identities=14% Similarity=0.122 Sum_probs=58.9
Q ss_pred hHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhhHHHhHh
Q psy3432 136 LQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLK 215 (695)
Q Consensus 136 ~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yNa~lsl~ 215 (695)
+...+.+.|+..+|+ .+.=|++ |..=|+- =+++-++-.|+.+||...+ .+++|+.. .++. -.-..-.-+.
T Consensus 27 IK~aL~~~l~~~~e~--G~~wfi~--ggalG~d-~wAaEvvl~LK~~yp~lkL--~~~~PF~~-q~~~--W~e~~q~~y~ 96 (182)
T PRK13660 27 IKKAIKRKLIALLEE--GLEWVII--SGQLGVE-LWAAEVVLELKEEYPDLKL--AVITPFEE-HGEN--WNEANQEKLA 96 (182)
T ss_pred HHHHHHHHHHHHHHC--CCCEEEE--CCcchHH-HHHHHHHHHHHhhCCCeEE--EEEeCccc-hhhc--CCHHHHHHHH
Confidence 444555666666663 3433332 1122222 1356677789999998765 56778762 1221 1112234456
Q ss_pred hhhccCCcceeecChhhHHhhccccCCCCCChHHHhHHHHHhhhccc
Q psy3432 216 RLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVST 262 (695)
Q Consensus 216 ~l~e~sd~~i~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~i~~~t 262 (695)
.+.+.||-+..+...- ++ ....|..=|+.+...-..+.
T Consensus 97 ~i~~~aD~v~~vs~~~-y~--------~p~q~~~rn~fmv~~sd~~i 134 (182)
T PRK13660 97 NILKQADFVKSISKRP-YE--------SPAQFRQYNQFMLEHTDGAL 134 (182)
T ss_pred HHHHhCCEEEEecCCC-CC--------ChHHHHHHHHHHHHccCeEE
Confidence 7778899988885331 00 11237788887766554443
No 72
>COG0031 CysK Cysteine synthase [Amino acid transport and metabolism]
Probab=26.83 E-value=28 Score=37.18 Aligned_cols=64 Identities=17% Similarity=0.197 Sum_probs=37.4
Q ss_pred cCCCCCCCCCCccc-chhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhCCCceeEEEEeec
Q psy3432 117 KDGGGAGNNWASGY-SQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFP 195 (695)
Q Consensus 117 ~~~~g~g~~~~~Gy-~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P 195 (695)
..|.....||..=| +.|.|++++..+. ++. ++.++| || |--+-+.+.||+.+|+.. .++|-|
T Consensus 142 ~~Qf~NpaN~~aH~~tT~~EI~~~~~g~----------~d~--fVagvG--TG-GTitGvar~Lk~~~p~i~--iv~vdP 204 (300)
T COG0031 142 LNQFENPANPEAHYETTGPEIWQQTDGK----------VDA--FVAGVG--TG-GTITGVARYLKERNPNVR--IVAVDP 204 (300)
T ss_pred hhhcCCCccHHHHHhhhHHHHHHHhCCC----------CCE--EEEeCC--cc-hhHHHHHHHHHhhCCCcE--EEEECC
Confidence 34555666664433 4676666554433 333 334443 33 445558899999999954 466777
Q ss_pred CC
Q psy3432 196 NQ 197 (695)
Q Consensus 196 ~~ 197 (695)
..
T Consensus 205 ~~ 206 (300)
T COG0031 205 EG 206 (300)
T ss_pred CC
Confidence 53
No 73
>PF03283 PAE: Pectinacetylesterase
Probab=26.69 E-value=71 Score=35.20 Aligned_cols=50 Identities=22% Similarity=0.402 Sum_probs=35.8
Q ss_pred cchhhhhHHHHHHHHHHh-hcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhCCC
Q psy3432 130 YSQGKKLQEEIFDIIDRE-ADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPK 185 (695)
Q Consensus 130 y~~g~~~~d~~~d~IR~~-~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~deyp~ 185 (695)
|..|..+++.++|.|... +.+.+ -+++..+-+||.|+ -.-++.+++.+|.
T Consensus 133 ~frG~~i~~avl~~l~~~gl~~a~---~vlltG~SAGG~g~---~~~~d~~~~~lp~ 183 (361)
T PF03283_consen 133 YFRGYRILRAVLDDLLSNGLPNAK---QVLLTGCSAGGLGA---ILHADYVRDRLPS 183 (361)
T ss_pred EeecHHHHHHHHHHHHHhcCcccc---eEEEeccChHHHHH---HHHHHHHHHHhcc
Confidence 568999999999988876 54444 35777666666652 3336899999985
No 74
>PRK09461 ansA cytoplasmic asparaginase I; Provisional
Probab=26.24 E-value=1.5e+02 Score=32.29 Aligned_cols=93 Identities=23% Similarity=0.254 Sum_probs=55.9
Q ss_pred chhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCC-CchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhh
Q psy3432 131 SQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGS-GMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYN 209 (695)
Q Consensus 131 ~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGS-Glgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yN 209 (695)
....+.|.++.+.|++.. +..+||+|+| ||-+ --++.+++.+-+.-+|-.+++=+-.|.....+|....-++
T Consensus 62 ~mt~~~w~~la~~I~~~~---~~~dG~VVtH----GTDTmeeTA~~L~~~l~~~~kPVVlTGAmrP~~~~~sDg~~NL~~ 134 (335)
T PRK09461 62 DMTPEDWQHIADDIKANY---DDYDGFVILH----GTDTMAYTASALSFMLENLGKPVIVTGSQIPLAELRSDGQTNLLN 134 (335)
T ss_pred cCCHHHHHHHHHHHHHHh---ccCCeEEEee----ccchHHHHHHHHHHHHhCCCCCEEEeCCCCCCCCCCchHHHHHHH
Confidence 456778888888888766 4678999999 5554 3456666665444466667777778866222344333344
Q ss_pred HHHhHhhhhccCCcceeecChh
Q psy3432 210 SLLTLKRLTLNADCVVVLDNTA 231 (695)
Q Consensus 210 a~lsl~~l~e~sd~~i~~dN~a 231 (695)
++. +..-.......++|+++-
T Consensus 135 Av~-~A~~~~~~GV~V~f~~~i 155 (335)
T PRK09461 135 ALY-VAANYPINEVTLFFNNKL 155 (335)
T ss_pred HHH-HHcCCCCCeEEEEECCEe
Confidence 433 222222335566665543
No 75
>cd00519 Lipase_3 Lipase (class 3). Lipases are esterases that can hydrolyze long-chain acyl-triglycerides into di- and monoglycerides, glycerol, and free fatty acids at a water/lipid interface. A typical feature of lipases is "interfacial activation," the process of becoming active at the lipid/water interface, although several examples of lipases have been identified that do not undergo interfacial activation . The active site of a lipase contains a catalytic triad consisting of Ser - His - Asp/Glu, but unlike most serine proteases, the active site is buried inside the structure. A "lid" or "flap" covers the active site, making it inaccessible to solvent and substrates. The lid opens during the process of interfacial activation, allowing the lipid substrate access to the active site.
Probab=25.56 E-value=78 Score=31.95 Aligned_cols=51 Identities=25% Similarity=0.255 Sum_probs=34.7
Q ss_pred c-cchhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhC
Q psy3432 129 G-YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRF 183 (695)
Q Consensus 129 G-y~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~dey 183 (695)
| +.....+.+.+...+++..+++...+=++.=|||||+. ++.+.-.|...+
T Consensus 102 Gf~~~~~~~~~~~~~~~~~~~~~~p~~~i~vtGHSLGGai----A~l~a~~l~~~~ 153 (229)
T cd00519 102 GFYSAYKSLYNQVLPELKSALKQYPDYKIIVTGHSLGGAL----ASLLALDLRLRG 153 (229)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEccCHHHHH----HHHHHHHHHhhC
Confidence 6 44566777888888888887766655556669999874 455555566554
No 76
>PF01713 Smr: Smr domain; InterPro: IPR002625 This family includes the Smr (Small MutS Related) proteins, and the C-terminal region of the MutS2 protein. It has been suggested that this domain interacts with the MutS1 (P23909 from SWISSPROT) protein in the case of Smr proteins and with the N-terminal MutS related region of MutS2, P94545 from SWISSPROT [].; PDB: 3QD7_X 2D9I_A 3FAU_A 2VKC_A 2ZQE_A.
Probab=23.67 E-value=1e+02 Score=25.91 Aligned_cols=51 Identities=12% Similarity=0.267 Sum_probs=30.0
Q ss_pred HHHHHHHHhhcCC--CCCCceeEeeecC----CCCCCCchHHHHHHHHhhCCCceeEEEE
Q psy3432 139 EIFDIIDREADGS--DSLEGFVLCHSIA----GGTGSGMGSYLLEHLADRFPKKIIQTYS 192 (695)
Q Consensus 139 ~~~d~IR~~~E~c--D~lqgf~i~~Sl~----GGTGSGlgs~lle~L~deyp~~~i~~~~ 192 (695)
+..+.++..++.| ...+.+.|+|+.| +|. +-..+.+.|++.+....+..+.
T Consensus 10 eA~~~l~~~l~~~~~~~~~~~~II~G~G~hS~~g~---Lk~~V~~~L~~~~~~~~v~~~~ 66 (83)
T PF01713_consen 10 EALRALEEFLDEARQRGIRELRIITGKGNHSKGGV---LKRAVRRWLEEGYQYEEVLAYR 66 (83)
T ss_dssp HHHHHHHHHHHHHHHTTHSEEEEE--STCTCCTSH---HHHHHHHHHHHTHCCTTEEEEE
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEeccCCCCCCCc---HHHHHHHHHHhhhccchhheee
Confidence 4444444444444 4557889999888 553 7788888887655455454443
No 77
>COG1611 Predicted Rossmann fold nucleotide-binding protein [General function prediction only]
Probab=23.42 E-value=95 Score=31.36 Aligned_cols=49 Identities=16% Similarity=0.186 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCC
Q psy3432 136 LQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQ 197 (695)
Q Consensus 136 ~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~ 197 (695)
+.+...+.-|..++++ ++|+. |||+| +++...+-.-...-.++.|.|..
T Consensus 32 ~~~~a~~lg~~la~~g-----~~V~t--GG~~G------iMea~~~gA~~~gg~~vGi~p~~ 80 (205)
T COG1611 32 YYELARELGRELAKRG-----LLVIT--GGGPG------VMEAVARGALEAGGLVVGILPGL 80 (205)
T ss_pred HHHHHHHHHHHHHhCC-----cEEEe--CCchh------hhhHHHHHHHHcCCeEEEecCCC
Confidence 5666777777777766 56664 55555 66666665545667788898854
No 78
>PLN02408 phospholipase A1
Probab=22.75 E-value=1.4e+02 Score=33.07 Aligned_cols=63 Identities=16% Similarity=0.246 Sum_probs=39.6
Q ss_pred hhHHHHHHHHHHhhcCCCCCC-ceeEe-eecCCCCCCCchHHHHHHHHhhCCCceeEEEEeecCCCCCCc
Q psy3432 135 KLQEEIFDIIDREADGSDSLE-GFVLC-HSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISD 202 (695)
Q Consensus 135 ~~~d~~~d~IR~~~E~cD~lq-gf~i~-~Sl~GGTGSGlgs~lle~L~deyp~~~i~~~~v~P~~~~~~e 202 (695)
.+.+++++.|++.+++...-+ .+.|+ |||||. ++.+.+-.|+..++....+.+..|=.| .+++
T Consensus 179 s~r~qVl~eI~~ll~~y~~~~~sI~vTGHSLGGA----LAtLaA~dl~~~~~~~~~V~v~tFGsP-RVGN 243 (365)
T PLN02408 179 SLQEMVREEIARLLQSYGDEPLSLTITGHSLGAA----LATLTAYDIKTTFKRAPMVTVISFGGP-RVGN 243 (365)
T ss_pred hHHHHHHHHHHHHHHhcCCCCceEEEeccchHHH----HHHHHHHHHHHhcCCCCceEEEEcCCC-Cccc
Confidence 467888888988887764322 24444 888776 667777777777765544444444444 3344
No 79
>TIGR02364 dha_pts dihydroxyacetone kinase, phosphotransfer subunit. In E. coli and many other bacteria, unlike the yeasts and a few bacteria such as Citrobacter freundii, the dihydroxyacetone kinase (also called glycerone kinase) transfers a phosphate from a phosphoprotein rather than from ATP and contains multiple subunits. This protein, which resembles proteins of PTS transport systems, is found with its gene adjacent to
Probab=22.02 E-value=62 Score=29.97 Aligned_cols=41 Identities=20% Similarity=0.261 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhcCCCC-CCceeEeeecCCCCCCCchH-HHHHHHH
Q psy3432 137 QEEIFDIIDREADGSDS-LEGFVLCHSIAGGTGSGMGS-YLLEHLA 180 (695)
Q Consensus 137 ~d~~~d~IR~~~E~cD~-lqgf~i~~Sl~GGTGSGlgs-~lle~L~ 180 (695)
.+...++|++.+|+++. =+|++++..| |||= +-+ ..++.+.
T Consensus 41 ~gt~~~~I~~ai~~~~~~~dgVlvl~DL-Ggs~--~n~e~a~~~l~ 83 (125)
T TIGR02364 41 LGTSPDKIIEAIEKADNEADGVLIFYDL-GSAV--MNAEMAVELLE 83 (125)
T ss_pred ccchHHHHHHHHHHhcCCCCCEEEEEcC-CCcH--hHHHHHHHHhc
Confidence 34566777777888855 7899999999 6632 222 3455554
No 80
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=20.97 E-value=1.6e+02 Score=33.84 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=37.1
Q ss_pred ccccccccccccchhhhHhHHHHHhhcc-----CCCCCCCccccCccccccccCCcCCC
Q psy3432 427 EEMFLESLDELDDSRREVDELVQEYCAA-----TRPDYLYPSYMNNDLIGLIAPLIPTP 480 (695)
Q Consensus 427 eGmee~~~~eF~Ea~~~l~~li~eY~~~-----~t~~~r~~g~ln~dl~~i~tnLVP~P 480 (695)
.|+.. ++|.+-...=...++.|... .+..+|+-=.||..+-.++.-|+-.|
T Consensus 332 ~g~~~---e~F~~Dt~~Wk~~V~~Y~~l~~~~i~~~~iRNVMDMnAg~GGFAAAL~~~~ 387 (506)
T PF03141_consen 332 PGISP---EEFKEDTKHWKKRVSHYKKLLGLAIKWGRIRNVMDMNAGYGGFAAALIDDP 387 (506)
T ss_pred CCCCH---HHHHHHHHHHHHHHHHHHHhhcccccccceeeeeeecccccHHHHHhccCC
Confidence 46654 78999999999999999844 44667776667777777766665555
No 81
>cd00411 Asparaginase Asparaginase (amidohydrolase): Asparaginases are tetrameric enzymes that catalyze the hydrolysis of asparagine to aspartic acid and ammonia. In bacteria, there are two classes of amidohydrolases, one highly specific for asparagine and localised to the periplasm, and a second (asparaginase- glutaminase) present in the cytosol that hydrolyzises both asparagine and glutamine with similar specificities.
Probab=20.90 E-value=2.1e+02 Score=31.01 Aligned_cols=92 Identities=20% Similarity=0.231 Sum_probs=54.8
Q ss_pred chhhhhHHHHHHHHHHhhcCCCCCCceeEeeecCCCCCC-CchHHHHHHHHhhCCCceeEEEEeecCCCCCCccccchhh
Q psy3432 131 SQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGS-GMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYN 209 (695)
Q Consensus 131 ~~g~~~~d~~~d~IR~~~E~cD~lqgf~i~~Sl~GGTGS-Glgs~lle~L~deyp~~~i~~~~v~P~~~~~~e~~v~~yN 209 (695)
....+.+..+.+.|++..++ .+||+|+| ||-+ --++..+..+-+. +|-.+++=+-.|.....+|... ...
T Consensus 59 ~~t~~~w~~l~~~I~~~~~~---~dGiVVtH----GTDTmeeTA~~L~~~l~~-~kPVVlTGA~rp~~~~~sDg~~-NL~ 129 (323)
T cd00411 59 DMTDEDWLKIAKDINELYDS---YDGFVITH----GTDTMEETAYFLSLTLEN-DKPVVLTGSMRPSTELSADGPL-NLY 129 (323)
T ss_pred cCCHHHHHHHHHHHHHHHHh---cCcEEEEc----CcccHHHHHHHHHHHhcC-CCCEEEECCCCCCCCcCcchHH-HHH
Confidence 35667788888888877753 78999999 5553 3355555544444 6767777778886522233332 233
Q ss_pred HHHhHhhhhc--cCCcceeecChh
Q psy3432 210 SLLTLKRLTL--NADCVVVLDNTA 231 (695)
Q Consensus 210 a~lsl~~l~e--~sd~~i~~dN~a 231 (695)
.++......+ .....++|+++-
T Consensus 130 ~Al~~A~~~~~~~~gV~V~f~~~i 153 (323)
T cd00411 130 NAVYVAANYDSRGRGVLVVFNDRI 153 (323)
T ss_pred HHHHHHcCcccCCCeEEEEECCEE
Confidence 3333333222 456777886653
Done!