RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy3432
(695 letters)
>gnl|CDD|100017 cd02188, gamma_tubulin, Gamma-tubulin is a ubiquitous
phylogenetically conserved member of tubulin
superfamily. Gamma is a low abundance protein present
within the cells in both various types of
microtubule-organizing centers and cytoplasmic protein
complexes. Gamma-tubulin recruits the
alpha/beta-tubulin dimers that form the minus ends of
microtubules and is thought to be involved in
microtubule nucleation and capping.
Length = 431
Score = 702 bits (1813), Expect = 0.0
Identities = 295/430 (68%), Positives = 332/430 (77%), Gaps = 57/430 (13%)
Query: 28 ADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKL 87
ADDEHY+PRA+L+DLEPRVI++I NS Y LYNPEN++LSK GGGAGNNWASGYSQG+++
Sbjct: 53 ADDEHYVPRAILIDLEPRVINSIQNSEYRNLYNPENIFLSKHGGGAGNNWASGYSQGEEV 112
Query: 88 QEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDRE 147
QEEI DIIDREADGSDSLE
Sbjct: 113 QEEILDIIDREADGSDSLE----------------------------------------- 131
Query: 148 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQP 207
GFVLCHSIAGGTGSGMGSYLLE L DR+PKK+IQTYSVFPNQDE SDVVVQP
Sbjct: 132 --------GFVLCHSIAGGTGSGMGSYLLERLNDRYPKKLIQTYSVFPNQDESSDVVVQP 183
Query: 208 YNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRY 267
YNS+LTLKRL LNADCVVVLDNTALNRIA DRLHI+NP+F QINSLVST+M+ ST+TLRY
Sbjct: 184 YNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTTTLRY 243
Query: 268 PSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMV 327
P YMNNDLI LIA LIPTPRLHFLMT YTPLT++ AS+RKTTVLDVMRRLLQPKN+MV
Sbjct: 244 PGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQIAASVRKTTVLDVMRRLLQPKNIMV 303
Query: 328 STAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSP 387
STA + CY+SILNIIQGEVDP QVHKSLQRIRER+L NFIPW PA IQVALSKKSP
Sbjct: 304 STATRK--NGCYISILNIIQGEVDPTQVHKSLQRIRERRLANFIPWGPASIQVALSKKSP 361
Query: 388 YVPTSHRVSGLMLANHTNISSGISW------QLPKREAFLEQFRKEEMFLESLDELDDSR 441
YVPT+HRVSGLMLANHT+I+S +L KR AFL+ +RKE+MF ++LDE D+SR
Sbjct: 362 YVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKRRAFLDNYRKEDMFSDNLDEFDESR 421
Query: 442 REVDELVQEY 451
V L++EY
Sbjct: 422 EVVQSLIEEY 431
Score = 319 bits (819), Expect = e-102
Identities = 139/214 (64%), Positives = 159/214 (74%), Gaps = 30/214 (14%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
YP YMNNDLI LIA LIPTPRLHFLMT YTPLT++ +
Sbjct: 243 YPGYMNNDLISLIASLIPTPRLHFLMTSYTPLTSDQ-----------------------I 279
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
AS+RKTTVLDVMRRLLQPKN+MVSTA + CY+SILNIIQGEVDP QVHKSLQRIR
Sbjct: 280 AASVRKTTVLDVMRRLLQPKNIMVSTATRK--NGCYISILNIIQGEVDPTQVHKSLQRIR 337
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTG-----KR 635
ER+L NFIPW PA IQVALSKKSPYVPT+HRVSGLMLANHT+I+SLF+R L KR
Sbjct: 338 ERRLANFIPWGPASIQVALSKKSPYVPTAHRVSGLMLANHTSIASLFERILKQFDKLRKR 397
Query: 636 EAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
AFL+ +RKE+MF ++LDE D+SR V L++EY
Sbjct: 398 RAFLDNYRKEDMFSDNLDEFDESREVVQSLIEEY 431
>gnl|CDD|215108 PLN00222, PLN00222, tubulin gamma chain; Provisional.
Length = 454
Score = 650 bits (1678), Expect = 0.0
Identities = 285/442 (64%), Positives = 323/442 (73%), Gaps = 58/442 (13%)
Query: 28 ADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKL 87
ADDEHYIPRA+L+DLEPRVI+ I NS Y LYN EN+++S GGGAGNN
Sbjct: 55 ADDEHYIPRALLIDLEPRVINGIQNSEYRNLYNHENIFVSDHGGGAGNN----------- 103
Query: 88 QEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDRE 147
WASGY QG++++E+I D+IDRE
Sbjct: 104 --------------------------------------WASGYHQGEQVEEDIMDMIDRE 125
Query: 148 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQP 207
ADGSDSLEGFVLCHSIAGGTGSGMGSYLLE L DR+ KK++QTYSVFPNQ E SDVVVQP
Sbjct: 126 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLEALNDRYSKKLVQTYSVFPNQMETSDVVVQP 185
Query: 208 YNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRY 267
YNSLLTLKRLTLNADCVVVLDNTALNRIA DRLH+ENP+FAQ NSLVST+M+ ST+TLRY
Sbjct: 186 YNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSASTTTLRY 245
Query: 268 PSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMV 327
P YMNNDL+GL+A LIPTPR HFLMTGYTPLT E + IRKTTVLDVMRRLLQ KN+MV
Sbjct: 246 PGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIRKTTVLDVMRRLLQTKNIMV 305
Query: 328 S--TAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKK 385
S SQ Y+SILNIIQGEVDP QVHKSLQRIRERKL NFI W PA IQVALS+K
Sbjct: 306 SSYARTKEASQAKYISILNIIQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRK 365
Query: 386 SPYVPTSHRVSGLMLANHTNISSGISW------QLPKREAFLEQFRKEEMFLES-LDELD 438
SPYV T+HRVSGLMLANHT+I S +L K++AFL+ +RK MF ++ L E D
Sbjct: 366 SPYVQTAHRVSGLMLANHTSIRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFD 425
Query: 439 DSRREVDELVQEYCAATRPDYL 460
+SR V+ LV EY A PDY+
Sbjct: 426 ESREIVESLVDEYKACESPDYI 447
Score = 316 bits (810), Expect = e-100
Identities = 141/249 (56%), Positives = 166/249 (66%), Gaps = 27/249 (10%)
Query: 443 EVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIR 502
+ + LV +A+ YP YMNNDL+GL+A LIPTPR HFLMTGYTPLT E + IR
Sbjct: 227 QTNSLVSTVMSASTTTLRYPGYMNNDLVGLLASLIPTPRCHFLMTGYTPLTVERQANVIR 286
Query: 503 KTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNI 562
KTTVLDVMRRLLQ KN+MV+S +T SQ Y+SILNI
Sbjct: 287 KTTVLDVMRRLLQTKNIMVSSYARTK---------------------EASQAKYISILNI 325
Query: 563 IQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTN 622
IQGEVDP QVHKSLQRIRERKL NFI W PA IQVALS+KSPYV T+HRVSGLMLANHT+
Sbjct: 326 IQGEVDPTQVHKSLQRIRERKLANFIEWGPASIQVALSRKSPYVQTAHRVSGLMLANHTS 385
Query: 623 ISSLFDRCLTG-----KREAFLEQFRKEEMFLES-LDELDDSRREVDELVQEYCAATRPD 676
I LF +CL+ K++AFL+ +RK MF ++ L E D+SR V+ LV EY A PD
Sbjct: 386 IRHLFSKCLSQYDKLRKKQAFLDNYRKFPMFADNDLSEFDESREIVESLVDEYKACESPD 445
Query: 677 YLSWGGAKS 685
Y+ WG
Sbjct: 446 YIKWGMEDP 454
>gnl|CDD|227356 COG5023, COG5023, Tubulin [Cytoskeleton].
Length = 443
Score = 450 bits (1160), Expect = e-153
Identities = 176/469 (37%), Positives = 259/469 (55%), Gaps = 66/469 (14%)
Query: 8 PENVYLSKDGGGAG--NNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVY 65
P+ L G + + A D ++PRA+L+DLEP VI + N PY L++PEN+
Sbjct: 32 PDGTLLDSSDEGDERFDVFFYEASDGKFVPRAILVDLEPGVIDQVRNGPYGSLFHPENII 91
Query: 66 LSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNN 125
K+G AGNNWA G+
Sbjct: 92 FGKEG--AGNNWARGH-------------------------------------------- 105
Query: 126 WASGYSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPK 185
Y+ GK++ +++ D+I READG D L+GF+L HS+ GGTGSG+GS LLE L + +PK
Sbjct: 106 ----YTVGKEIIDDVMDMIRREADGCDGLQGFLLLHSLGGGTGSGLGSLLLERLREEYPK 161
Query: 186 KIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENP 245
KI T+SVFP ++SDVVV+PYNS+LTL RL N+DC V+DN AL I L I+NP
Sbjct: 162 KIKLTFSVFPAP-KVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNP 220
Query: 246 SFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVA 305
S+ +N L+ST+M+ T++LR+P Y+N DL + L+P PRLHF + YTP T++ A
Sbjct: 221 SYDDLNQLISTVMSSVTTSLRFPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSD-GSA 279
Query: 306 SIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRER 365
+ K +V +V +L PKN MVS P + YM++ + +G+VDP V +++ R++ +
Sbjct: 280 AHEKNSVSEVTNQLFDPKNQMVSCDP---RKGRYMAVCLLFRGDVDPRDVSRAVTRVQSK 336
Query: 366 KLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNIS---SGISWQ---LPKREA 419
+ + F+ W P G +VA+ K+ P P VSG ML+N T+I+ I Q + K+ A
Sbjct: 337 RTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKKRA 396
Query: 420 FLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPDYLYPSYMNND 468
FL + E M E ++R +V +L +EY AA + YL +
Sbjct: 397 FLHWYVGEGM---EEGEFSEAREDVADLEEEYEAAEQDSYLDDEEDEEE 442
Score = 193 bits (493), Expect = 1e-54
Identities = 72/224 (32%), Positives = 112/224 (50%), Gaps = 35/224 (15%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P Y+N DL + L+P PRLHF + YTP T++
Sbjct: 242 FPGYLNVDLRSIQTNLVPYPRLHFPLVSYTPFTSD------------------------G 277
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
A+ K +V +V +L PKN MVS P + YM++ + +G+VDP V +++ R++
Sbjct: 278 SAAHEKNSVSEVTNQLFDPKNQMVSCDP---RKGRYMAVCLLFRGDVDPRDVSRAVTRVQ 334
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRC-----LTGKR 635
++ + F+ W P G +VA+ K+ P P VSG ML+N T+I+ F R L K+
Sbjct: 335 SKRTIQFVEWCPTGFKVAICKRPPSEPAEVDVSGCMLSNTTSIAEAFKRIDDQFDLMFKK 394
Query: 636 EAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPDYLS 679
AFL + E M E ++R +V +L +EY AA + YL
Sbjct: 395 RAFLHWYVGEGM---EEGEFSEAREDVADLEEEYEAAEQDSYLD 435
>gnl|CDD|100014 cd00286, Tubulin_FtsZ, Tubulin/FtsZ: Family includes tubulin
alpha-, beta-, gamma-, delta-, and epsilon-tubulins as
well as FtsZ, all of which are involved in polymer
formation. Tubulin is the major component of
microtubules, but also exists as a heterodimer and as a
curved oligomer. Microtubules exist in all eukaryotic
cells and are responsible for many functions, including
cellular transport, cell motility, and mitosis. FtsZ
forms a ring-shaped septum at the site of bacterial cell
division, which is required for constriction of cell
membrane and cell envelope to yield two daughter cells.
FtsZ can polymerize into tubes, sheets, and rings in
vitro and is ubiquitous in eubacteria, archaea, and
chloroplasts.
Length = 328
Score = 333 bits (855), Expect = e-109
Identities = 143/386 (37%), Positives = 202/386 (52%), Gaps = 65/386 (16%)
Query: 18 GGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNW 77
G AGN GA + + VL+D EP VI ++ PY L+ L GGGAGNNW
Sbjct: 8 GQAGNQ--IGA---KFWEQLVLVDTEPGVIDETLSGPYRLLFCIG--QLITHGGGAGNNW 60
Query: 78 ASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQ 137
A G+ G++ Q
Sbjct: 61 AFGHETA------------------------------------------------GEEYQ 72
Query: 138 EEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQ 197
EEI DII +EA+ DSL+GF + HS+ GGTGSG+G L E L D +PK++ T+S+ P
Sbjct: 73 EEILDIIRKEAEECDSLQGFFITHSLGGGTGSGLGPVLAERLKDEYPKRLKITFSILPGP 132
Query: 198 DEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTI 257
DE V+V+PYNS+LTL LT ++DC+VV+DN AL I LHI+ P+F IN L++T
Sbjct: 133 DE--GVIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATA 190
Query: 258 MAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMR 317
++ T+ LR+ +N DL L L+P PRLHFLM GY PL +E A+ V +++R
Sbjct: 191 LSSLTTPLRFDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSE-GSATPTTLRVAELVR 249
Query: 318 RLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAG 377
+ L+ KN MV P Y++ L +++G V P +V + + R+ R + WSP G
Sbjct: 250 QALRSKNQMVVCDPT---HGGYIAALLLVRGPVSPSEVREGIARVAPRTS--HLSWSPPG 304
Query: 378 IQVALSKKSPYVPTSHRVSGLMLANH 403
I+V +S P H+VS L+L+N
Sbjct: 305 IKVGVSPTPPAS--EHKVSALLLSNS 328
Score = 117 bits (295), Expect = 8e-29
Identities = 49/160 (30%), Positives = 74/160 (46%), Gaps = 31/160 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+ +N DL L L+P PRLHFLM GY PL +E
Sbjct: 200 FDGSLNVDLRELSENLVPFPRLHFLMVGYAPLDSEGS----------------------- 236
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
A+ V +++R+ L+ KN MV P Y++ L +++G V P +V + + R+
Sbjct: 237 -ATPTTLRVAELVRQALRSKNQMVVCDPT---HGGYIAALLLVRGPVSPSEVREGIARVA 292
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANH 620
R + WSP GI+V +S P H+VS L+L+N
Sbjct: 293 PRTS--HLSWSPPGIKVGVSPTPPAS--EHKVSALLLSNS 328
>gnl|CDD|100023 cd06059, Tubulin, The tubulin superfamily includes five distinct
families, the alpha-, beta-, gamma-, delta-, and
epsilon-tubulins and a sixth family (zeta-tubulin) which
is present only in kinetoplastid protozoa. The alpha-
and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins. Also included in
this group is the mitochondrial Misato/DML1 protein
family, involved in mitochondrial fusion and in
mitochondrial distribution and morphology.
Length = 382
Score = 325 bits (836), Expect = e-105
Identities = 138/441 (31%), Positives = 223/441 (50%), Gaps = 73/441 (16%)
Query: 18 GGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNW 77
G GN + + +L+DL+PRVI+ I+ +KL++P + K G+GNNW
Sbjct: 8 GQCGNQIGN-----KFWELLILVDLDPRVINEILQGQLSKLFDPNQLVNGK--EGSGNNW 60
Query: 78 ASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQ 137
A GY Y+ G +L
Sbjct: 61 ARGY------------------------------------------------YTIGPELI 72
Query: 138 EEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQ 197
+EI D I ++ + DSL+GF + HS+ GGTGSG+GS LLE L+D +PK +I T+S+FP+
Sbjct: 73 DEILDRIRKQVEKCDSLQGFQITHSLGGGTGSGLGSLLLELLSDEYPKILINTFSIFPSP 132
Query: 198 DEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTI 257
+ S VV+PYNS+L+L L N+D V++ DN AL I +L I+ PSF +N++++ I
Sbjct: 133 -QGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQI 191
Query: 258 MAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMR 317
++ T++LR+P Y+N DL L L+P PRLHFL + PL + ++ + K +L ++
Sbjct: 192 ISSITASLRFPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLIS-YDSQTTEKLNLLQIIN 250
Query: 318 RLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAG 377
L N S P ++ Y++ I +G+V ++ +++ +++ + N W P G
Sbjct: 251 ELFNNDNSFFSCDP---TKGRYLAAALIFRGDVFQSEIQEAINKLKNKL--NIQSWIPDG 305
Query: 378 IQVALSKKSPYVPTSHRVSGLMLANHTNISS------GISWQLPKREAFLEQFRKEEMFL 431
+V+ KK P S L L+N T+I +L KR+AFL + E M
Sbjct: 306 FKVSNCKKPPRA--ELGKSALFLSNSTSIGESLERLIEKFDKLYKRKAFLHWYLGEGMD- 362
Query: 432 ESLDELDDSRREVDELVQEYC 452
E E ++ +++L+Q Y
Sbjct: 363 E--MEFTEAESSLEDLIQSYQ 381
Score = 121 bits (305), Expect = 1e-29
Identities = 54/215 (25%), Positives = 91/215 (42%), Gaps = 39/215 (18%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P Y+N DL L L+P PRLHFL + PL S
Sbjct: 201 FPGYLNFDLRKLATNLVPFPRLHFLTPSFAPLI------SYDS----------------- 237
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
+ K +L ++ L N S P ++ Y++ I +G+V ++ +++ +++
Sbjct: 238 -QTTEKLNLLQIINELFNNDNSFFSCDP---TKGRYLAAALIFRGDVFQSEIQEAINKLK 293
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTG-----KR 635
+ N W P G +V+ KK P S L L+N T+I +R + KR
Sbjct: 294 NKL--NIQSWIPDGFKVSNCKKPPRA--ELGKSALFLSNSTSIGESLERLIEKFDKLYKR 349
Query: 636 EAFLEQFRKEEMFLESLDELDDSRREVDELVQEYC 670
+AFL + E M E E ++ +++L+Q Y
Sbjct: 350 KAFLHWYLGEGMD-E--MEFTEAESSLEDLIQSYQ 381
>gnl|CDD|100016 cd02187, beta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 425
Score = 277 bits (710), Expect = 3e-86
Identities = 136/450 (30%), Positives = 225/450 (50%), Gaps = 83/450 (18%)
Query: 10 NVYLSKDGGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKD 69
NVY ++ GG Y+PRA+L+DLEP + ++ + P+ +L+ P+N
Sbjct: 47 NVYFNEASGG------------KYVPRAILVDLEPGTMDSVRSGPFGQLFRPDNFVFG-- 92
Query: 70 GGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG 129
GAGNNWA G+
Sbjct: 93 QSGAGNNWAKGH------------------------------------------------ 104
Query: 130 YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQ 189
Y++G +L + + D++ +EA+ D L+GF L HS+ GGTGSGMG+ L+ + + +P +I+
Sbjct: 105 YTEGAELIDSVLDVVRKEAESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMA 164
Query: 190 TYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQ 249
T+SVFP+ ++SD VV+PYN+ L++ +L N+D +DN AL I L + NP++
Sbjct: 165 TFSVFPSP-KVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGD 223
Query: 250 INSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRK 309
+N LVS +M+ T+ LR+P +N+DL L ++P PRLHF M G+ PLT+ R
Sbjct: 224 LNHLVSAVMSGITTCLRFPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGS-QQYRA 282
Query: 310 TTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVN 369
TV ++ +++ KNMM + P Y++ I +G V +V + + ++ +
Sbjct: 283 LTVPELTQQMFDAKNMMAACDP---RHGRYLTAAAIFRGRVSMKEVDEQMLNVQNKNSSY 339
Query: 370 FIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNIS---SGISWQ---LPKREAFLEQ 423
F+ W P ++ A+ P ++S + N T I IS Q + +R+AFL
Sbjct: 340 FVEWIPNNVKTAVCD---IPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHW 396
Query: 424 FRKEEMFLESLDELDDSRRE--VDELVQEY 451
+ E M DE++ + E +++LV EY
Sbjct: 397 YTGEGM-----DEMEFTEAESNMNDLVSEY 421
Score = 88.5 bits (220), Expect = 1e-18
Identities = 54/216 (25%), Positives = 92/216 (42%), Gaps = 42/216 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N+DL L ++P PRLHF M G+ PLT+
Sbjct: 241 FPGQLNSDLRKLAVNMVPFPRLHFFMPGFAPLTSRGS----------------------- 277
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
R TV ++ +++ KNMM + P Y++ I +G V +V + + ++
Sbjct: 278 -QQYRALTVPELTQQMFDAKNMMAACDP---RHGRYLTAAAIFRGRVSMKEVDEQMLNVQ 333
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTG-----KR 635
+ F+ W P ++ A+ P ++S + N T I LF R +R
Sbjct: 334 NKNSSYFVEWIPNNVKTAVCD---IPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRR 390
Query: 636 EAFLEQFRKEEMFLESLDELDDSRRE--VDELVQEY 669
+AFL + E M DE++ + E +++LV EY
Sbjct: 391 KAFLHWYTGEGM-----DEMEFTEAESNMNDLVSEY 421
>gnl|CDD|240228 PTZ00010, PTZ00010, tubulin beta chain; Provisional.
Length = 445
Score = 256 bits (655), Expect = 4e-78
Identities = 130/432 (30%), Positives = 216/432 (50%), Gaps = 71/432 (16%)
Query: 28 ADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKL 87
A Y+PRAVL+DLEP + ++ PY +L+ P+N + G AGNNWA G+
Sbjct: 54 ATGGRYVPRAVLMDLEPGTMDSVRAGPYGQLFRPDNFIFGQSG--AGNNWAKGH------ 105
Query: 88 QEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDRE 147
Y++G +L + + D++ +E
Sbjct: 106 ------------------------------------------YTEGAELIDSVLDVVRKE 123
Query: 148 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQP 207
A+ D L+GF + HS+ GGTGSGMG+ L+ L + +P +I+ T+SVFP+ ++SD VV+P
Sbjct: 124 AESCDCLQGFQITHSLGGGTGSGMGTLLISKLREEYPDRIMMTFSVFPSP-KVSDTVVEP 182
Query: 208 YNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRY 267
YN+ L++ +L NAD + +DN AL I L + P++ +N LVS +M+ T LR+
Sbjct: 183 YNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCLRF 242
Query: 268 PSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMV 327
P +N+DL L L+P PRLHF M G+ PLT+ R +V ++ +++ KNMM
Sbjct: 243 PGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGS-QQYRGLSVPELTQQMFDAKNMMC 301
Query: 328 STAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSP 387
+ P Y++ + +G + +V + + ++ + F+ W P I+ ++
Sbjct: 302 AADP---RHGRYLTASALFRGRMSTKEVDEQMLNVQNKNSSYFVEWIPNNIKSSVCDIP- 357
Query: 388 YVPTSHRVSGLMLANHTNISS---GISWQLP---KREAFLEQFRKEEMFLESLDELDDSR 441
P ++S + N T I + Q +R+AFL + E M DE++ +
Sbjct: 358 --PKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRRKAFLHWYTGEGM-----DEMEFTE 410
Query: 442 RE--VDELVQEY 451
E +++LV EY
Sbjct: 411 AESNMNDLVSEY 422
Score = 74.4 bits (183), Expect = 5e-14
Identities = 51/216 (23%), Positives = 92/216 (42%), Gaps = 42/216 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N+DL L L+P PRLHF M G+ PLT+
Sbjct: 242 FPGQLNSDLRKLAVNLVPFPRLHFFMMGFAPLTSRGS----------------------- 278
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
R +V ++ +++ KNMM + P Y++ + +G + +V + + ++
Sbjct: 279 -QQYRGLSVPELTQQMFDAKNMMCAADP---RHGRYLTASALFRGRMSTKEVDEQMLNVQ 334
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTG-----KR 635
+ F+ W P I+ ++ P ++S + N T I +F R +R
Sbjct: 335 NKNSSYFVEWIPNNIKSSVCDIP---PKGLKMSVTFIGNSTAIQEMFRRVGEQFTAMFRR 391
Query: 636 EAFLEQFRKEEMFLESLDELDDSRRE--VDELVQEY 669
+AFL + E M DE++ + E +++LV EY
Sbjct: 392 KAFLHWYTGEGM-----DEMEFTEAESNMNDLVSEY 422
>gnl|CDD|100015 cd02186, alpha_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. The alpha/beta-tubulin heterodimer is the
structural subunit of microtubules. The alpha- and
beta-tubulins share 40% amino-acid sequence identity,
exist in several isotype forms, and undergo a variety of
posttranslational modifications. The structures of
alpha- and beta-tubulin are basically identical: each
monomer is formed by a core of two beta-sheets
surrounded by alpha-helices. The monomer structure is
very compact, but can be divided into three regions
based on function: the amino-terminal nucleotide-binding
region, an intermediate taxol-binding region and the
carboxy-terminal region which probably constitutes the
binding surface for motor proteins.
Length = 434
Score = 231 bits (591), Expect = 8e-69
Identities = 123/434 (28%), Positives = 207/434 (47%), Gaps = 77/434 (17%)
Query: 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 92
++PRAV +DLEP VI + Y +L++PE + K+ A NN+A G+
Sbjct: 60 HVPRAVFIDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGH----------- 106
Query: 93 DIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSD 152
Y+ GK++ + + D I + AD
Sbjct: 107 -------------------------------------YTIGKEIIDLVLDRIRKLADNCT 129
Query: 153 SLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLL 212
L+GF++ HS GGTGSG GS LLE L+ + KK ++V+P+ ++S VV+PYNS+L
Sbjct: 130 GLQGFLIFHSFGGGTGSGFGSLLLERLSVDYGKKSKLEFTVYPS-PQVSTAVVEPYNSVL 188
Query: 213 TLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSYMN 272
T L ++DC ++DN A+ I L IE P++ +N L++ +++ T++LR+ +N
Sbjct: 189 TTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITASLRFDGALN 248
Query: 273 NDLIGLIAPLIPTPRLHFLMTGYTPLT----AEHEVASIRKTTVLDVMRRLLQPKNMMVS 328
DL L+P PR+HF + Y P+ A HE S+ + T +P N MV
Sbjct: 249 VDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHEQLSVAEIT-----NACFEPANQMVK 303
Query: 329 TAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSP- 387
P YM+ + +G+V P V+ ++ I+ ++ + F+ W P G +V ++ + P
Sbjct: 304 CDPRHGK---YMACCLLYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKVGINYQPPT 360
Query: 388 YVPTSH----RVSGLMLANHTNISSGISW------QLPKREAFLEQFRKEEMFLESLDEL 437
VP + + ML+N T I+ S + + AF+ + E M E
Sbjct: 361 VVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFDLMYSKRAFVHWYVGEGM---EEGEF 417
Query: 438 DDSRREVDELVQEY 451
++R ++ L ++Y
Sbjct: 418 SEAREDLAALEKDY 431
Score = 81.2 bits (201), Expect = 3e-16
Identities = 50/220 (22%), Positives = 90/220 (40%), Gaps = 42/220 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+ +N DL L+P PR+HF + Y P+ + + +
Sbjct: 243 FDGALNVDLNEFQTNLVPYPRIHFPLVSYAPIISAEKAYHE----------------QLS 286
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
VA I +P N MV P YM+ + +G+V P V+ ++ I+
Sbjct: 287 VAEI--------TNACFEPANQMVKCDPRHGK---YMACCLLYRGDVVPKDVNAAVATIK 335
Query: 581 ERKLVNFIPWSPAGIQVALSKKSP-YVPTSH----RVSGLMLANHTNISSLFDRC----- 630
++ + F+ W P G +V ++ + P VP + + ML+N T I+ + R
Sbjct: 336 TKRTIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWSRLDHKFD 395
Query: 631 -LTGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
+ KR AF+ + E M E ++R ++ L ++Y
Sbjct: 396 LMYSKR-AFVHWYVGEGM---EEGEFSEAREDLAALEKDY 431
>gnl|CDD|215107 PLN00220, PLN00220, tubulin beta chain; Provisional.
Length = 447
Score = 228 bits (583), Expect = 1e-67
Identities = 138/452 (30%), Positives = 230/452 (50%), Gaps = 87/452 (19%)
Query: 10 NVYLSKDGGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKD 69
NVY ++ GG Y+PRAVL+DLEP + ++ + PY +++ P+N +
Sbjct: 48 NVYYNEASGG------------RYVPRAVLMDLEPGTMDSVRSGPYGQIFRPDNFVFGQS 95
Query: 70 GGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASG 129
GAGNNWA G+
Sbjct: 96 --GAGNNWAKGH------------------------------------------------ 105
Query: 130 YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQ 189
Y++G +L + + D++ +EA+ D L+GF +CHS+ GGTGSGMG+ L+ + + +P +++
Sbjct: 106 YTEGAELIDSVLDVVRKEAENCDCLQGFQVCHSLGGGTGSGMGTLLISKIREEYPDRMML 165
Query: 190 TYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQ 249
T+SVFP+ ++SD VV+PYN+ L++ +L NAD +VLDN AL I L + PSF
Sbjct: 166 TFSVFPSP-KVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGD 224
Query: 250 INSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRK 309
+N L+S M+ T LR+P +N+DL L LIP PRLHF M G+ PLT+ R
Sbjct: 225 LNHLISATMSGVTCCLRFPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRA 283
Query: 310 TTVLDVMRRLLQPKNMMVSTAPDRMSQHC-YMSILNIIQGEVDPCQVHKSLQRIRERKLV 368
TV ++ +++ KNMM + P +H Y++ + +G++ +V + + ++ +
Sbjct: 284 LTVPELTQQMWDAKNMMCAADP----RHGRYLTASAMFRGKMSTKEVDEQMINVQNKNSS 339
Query: 369 NFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSGISWQLPKR--EAFLEQFRK 426
F+ W P ++ S P +++ + N T+I ++ +R E F FR+
Sbjct: 340 YFVEWIPNNVK---SSVCDIPPKGLKMASTFIGNSTSIQ-----EMFRRVSEQFTAMFRR 391
Query: 427 EEMFL-----ESLDELDDSRRE--VDELVQEY 451
+ FL E +DE++ + E +++LV EY
Sbjct: 392 KA-FLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
Score = 64.8 bits (158), Expect = 6e-11
Identities = 54/216 (25%), Positives = 97/216 (44%), Gaps = 42/216 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N+DL L LIP PRLHF M G+ PLT+ R TV ++ +++ KNMM
Sbjct: 242 FPGQLNSDLRKLAVNLIPFPRLHFFMVGFAPLTSRGS-QQYRALTVPELTQQMWDAKNMM 300
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
A+ P++ Y++ + +G++ +V + + ++
Sbjct: 301 CAA--------------DPRHGR------------YLTASAMFRGKMSTKEVDEQMINVQ 334
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTGKREAFLE 640
+ F+ W P ++ S P +++ + N T+I +F R E F
Sbjct: 335 NKNSSYFVEWIPNNVK---SSVCDIPPKGLKMASTFIGNSTSIQEMFRRV----SEQFTA 387
Query: 641 QFRKEEMFL-----ESLDELDDSRRE--VDELVQEY 669
FR++ FL E +DE++ + E +++LV EY
Sbjct: 388 MFRRKA-FLHWYTGEGMDEMEFTEAESNMNDLVSEY 422
>gnl|CDD|185562 PTZ00335, PTZ00335, tubulin alpha chain; Provisional.
Length = 448
Score = 214 bits (548), Expect = 2e-62
Identities = 118/431 (27%), Positives = 206/431 (47%), Gaps = 70/431 (16%)
Query: 22 NNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGY 81
N + S ++PR V LDLEP VI + Y +L++PE + K+ A NN+A G+
Sbjct: 50 NTFFSETGAGKHVPRCVFLDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AANNFARGH 107
Query: 82 SQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 141
Y+ GK++ +
Sbjct: 108 ------------------------------------------------YTIGKEIVDLCL 119
Query: 142 DIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEIS 201
D I + AD L+GF++ H++ GGTGSG+GS LLE L+ + KK ++++P+ ++S
Sbjct: 120 DRIRKLADNCTGLQGFLVFHAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTIYPS-PQVS 178
Query: 202 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 261
VV+PYNS+L+ L + D V+LDN A+ I L IE P++ +N L++ +++
Sbjct: 179 TAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSL 238
Query: 262 TSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQ 321
T++LR+ +N DL L+P PR+HF+++ Y P+ + E A + +V ++ +
Sbjct: 239 TASLRFDGALNVDLTEFQTNLVPYPRIHFMLSSYAPIIS-AEKAYHEQLSVAEITNSAFE 297
Query: 322 PKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVA 381
P NMM P YM+ + +G+V P V+ ++ I+ ++ + F+ W P G +
Sbjct: 298 PANMMAKCDP---RHGKYMACCLMYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKCG 354
Query: 382 LSKKSP-YVPTSHRV----SGLMLANHTNISSGISW------QLPKREAFLEQFRKEEM- 429
++ + P VP + M++N T I+ S + + AF+ + E M
Sbjct: 355 INYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSRIDHKFDLMYAKRAFVHWYVGEGME 414
Query: 430 ---FLESLDEL 437
F E+ ++L
Sbjct: 415 EGEFSEAREDL 425
Score = 79.0 bits (195), Expect = 2e-15
Identities = 48/210 (22%), Positives = 89/210 (42%), Gaps = 43/210 (20%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+ +N DL L+P PR+HF+++ Y P+ S K
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFMLSSYAPII------SAEK----------------- 280
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
A + +V ++ +P NMM P YM+ + +G+V P V+ ++ I+
Sbjct: 281 -AYHEQLSVAEITNSAFEPANMMAKCDP---RHGKYMACCLMYRGDVVPKDVNAAIATIK 336
Query: 581 ERKLVNFIPWSPAGIQVALSKKSP-YVPTSHRV----SGLMLANHTNISSLFDRCLTGK- 634
++ + F+ W P G + ++ + P VP + M++N T I+ +F R + K
Sbjct: 337 TKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAIAEVFSR-IDHKF 395
Query: 635 -----REAFLEQFRKEEM----FLESLDEL 655
+ AF+ + E M F E+ ++L
Sbjct: 396 DLMYAKRAFVHWYVGEGMEEGEFSEAREDL 425
>gnl|CDD|100019 cd02190, epsilon_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
epsilon-tubulins which are widespread but not ubiquitous
among eukaryotes play a role in basal body/centriole
morphogenesis.
Length = 379
Score = 202 bits (515), Expect = 2e-58
Identities = 121/429 (28%), Positives = 198/429 (46%), Gaps = 86/429 (20%)
Query: 31 EHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEE 90
EH RAVL+D+E V++ I+ P
Sbjct: 26 EHLKARAVLIDMEEGVVNEILKGP------------------------------------ 49
Query: 91 IFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQ-GKKLQEEIFDIIDREAD 149
+ D+ D L D GAGNNWA GY Q G + + I + I + A+
Sbjct: 50 LRDLFDET---------------QLVTDVSGAGNNWAVGYHQYGHQYIDSILEKIRKAAE 94
Query: 150 GSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYN 209
DSL+ F + HS+ GGTGSG+G+Y+LE LAD FP+ SV+P+ D+ DV+ PYN
Sbjct: 95 KCDSLQSFFILHSLGGGTGSGLGTYVLELLADEFPEVYRFVTSVYPSADD--DVITSPYN 152
Query: 210 SLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPS 269
S+L L+ L +ADCV+ ++N AL F +NS+V+ ++ TS++R+
Sbjct: 153 SVLALRELIEHADCVLPIENQAL------------VPFDAMNSIVANLLLNLTSSMRFEG 200
Query: 270 YMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVM-RRLLQPKNMMVS 328
+N DL + L+P PRLHFL++ +PL +V + LD M + ++
Sbjct: 201 SLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRR--LDQMFSDAFSRNHQLIR 258
Query: 329 TAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPY 388
P Y++ +++G V + ++++R++ + + F+ W+ G ++ L
Sbjct: 259 ADP---KHGLYLACALLVRGNVSVSDLRRNIERLKPK--LKFVKWNQEGWKIGLCSVP-- 311
Query: 389 VPTSHRVSGLMLANHTNISSGIS------WQLPKREAFLEQFRKEEMFLESLDELDDSRR 442
P H S L LAN+T I + +L KR+A L + + M + ++
Sbjct: 312 -PVGHSYSLLCLANNTCIKGTFTELKERFMKLYKRKAHLHHYTQVGM---EQGDFTEALE 367
Query: 443 EVDELVQEY 451
+ L+ EY
Sbjct: 368 SISNLIDEY 376
Score = 65.4 bits (160), Expect = 3e-11
Identities = 44/214 (20%), Positives = 83/214 (38%), Gaps = 40/214 (18%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+ +N DL + L+P PRLHFL++ +PL +V + LD M
Sbjct: 198 FEGSLNVDLNEITMNLVPFPRLHFLVSSLSPLYPLADVNVPPRR--LDQM---------- 245
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
+ ++ P Y++ +++G V + ++++R++
Sbjct: 246 ------------FSDAFSRNHQLIRADP---KHGLYLACALLVRGNVSVSDLRRNIERLK 290
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTG-----KR 635
+ + F+ W+ G ++ L P H S L LAN+T I F KR
Sbjct: 291 PK--LKFVKWNQEGWKIGLCSVP---PVGHSYSLLCLANNTCIKGTFTELKERFMKLYKR 345
Query: 636 EAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
+A L + + M + ++ + L+ EY
Sbjct: 346 KAHLHHYTQVGM---EQGDFTEALESISNLIDEY 376
>gnl|CDD|217812 pfam03953, Tubulin_C, Tubulin C-terminal domain. This family
includes the tubulin alpha, beta and gamma chains.
Members of this family are involved in polymer
formation. Tubulins are GTPases. FtsZ can polymerise
into tubes, sheets, and rings in vitro and is ubiquitous
in eubacteria and archaea. Tubulin is the major
component of microtubules. (The FtsZ GTPases have been
split into their won family).
Length = 126
Score = 190 bits (484), Expect = 2e-57
Identities = 61/123 (49%), Positives = 80/123 (65%), Gaps = 4/123 (3%)
Query: 286 PRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNI 345
PRLHFLMTGY PLT++ AS RKT+VL++ R+L PKNMMV+ P Y+S +
Sbjct: 1 PRLHFLMTGYAPLTSK-GKASHRKTSVLELTRQLFDPKNMMVACDP---RHGKYLSCALL 56
Query: 346 IQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTN 405
I+G+V P +VHK++QRI+E+ NF+ W P I+VA+ PY VSGLMLAN T
Sbjct: 57 IRGDVSPKEVHKAIQRIQEKNSANFVEWIPNSIKVAICDVPPYGLPGSDVSGLMLANTTA 116
Query: 406 ISS 408
I
Sbjct: 117 IQE 119
Score = 187 bits (478), Expect = 1e-56
Identities = 65/152 (42%), Positives = 83/152 (54%), Gaps = 27/152 (17%)
Query: 480 PRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQP 539
PRLHFLMTGY PLT++ AS RKT+VL++ R+L PKNMMVA
Sbjct: 1 PRLHFLMTGYAPLTSK-GKASHRKTSVLELTRQLFDPKNMMVAC---------------- 43
Query: 540 KNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVAL 599
Y+S +I+G+V P +VHK++QRI+E+ NF+ W P I+VA+
Sbjct: 44 ----------DPRHGKYLSCALLIRGDVSPKEVHKAIQRIQEKNSANFVEWIPNSIKVAI 93
Query: 600 SKKSPYVPTSHRVSGLMLANHTNISSLFDRCL 631
PY VSGLMLAN T I LF R L
Sbjct: 94 CDVPPYGLPGSDVSGLMLANTTAIQELFKRIL 125
>gnl|CDD|177802 PLN00221, PLN00221, tubulin alpha chain; Provisional.
Length = 450
Score = 190 bits (484), Expect = 2e-53
Identities = 122/451 (27%), Positives = 218/451 (48%), Gaps = 72/451 (15%)
Query: 17 GGG--AGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAG 74
GGG A N + S ++PRAV +DLEP VI + Y +L++PE + K+ A
Sbjct: 43 GGGDDAFNTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLISGKED--AA 100
Query: 75 NNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGK 134
NN+A G+ Y+ GK
Sbjct: 101 NNFARGH------------------------------------------------YTIGK 112
Query: 135 KLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVF 194
++ + D I + AD L+GF++ +++ GGTGSG+GS LLE L+ + KK ++V+
Sbjct: 113 EIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVY 172
Query: 195 PNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLV 254
P+ ++S VV+PYNS+L+ L + D V+LDN A+ I L IE P++ +N L+
Sbjct: 173 PSP-QVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLI 231
Query: 255 STIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLD 314
S +++ T++LR+ +N D+ L+P PR+HF+++ Y P+ + E A + +V +
Sbjct: 232 SQVISSLTASLRFDGALNVDITEFQTNLVPYPRIHFMLSSYAPVISA-EKAYHEQLSVAE 290
Query: 315 VMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWS 374
+ +P +MM P YM+ + +G+V P V+ ++ I+ ++ + F+ W
Sbjct: 291 ITNSAFEPASMMAKCDPRHGK---YMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWC 347
Query: 375 PAGIQVALSKKSPYVPTSHRVSGL-----MLANHTNISSGISWQLPK------REAFLEQ 423
P G + ++ + P V ++ + M++N T ++ S K + AF+
Sbjct: 348 PTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYAKRAFVHW 407
Query: 424 FRKEEM----FLESLDELDDSRREVDELVQE 450
+ E M F E+ ++L ++ +E+ E
Sbjct: 408 YVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
Score = 59.4 bits (144), Expect = 3e-09
Identities = 48/219 (21%), Positives = 95/219 (43%), Gaps = 43/219 (19%)
Query: 465 MNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVASI 524
+N D+ L+P PR+HF+++ Y P V S K A
Sbjct: 248 LNVDITEFQTNLVPYPRIHFMLSSYAP------VISAEK------------------AYH 283
Query: 525 RKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKL 584
+ +V ++ +P +MM P YM+ + +G+V P V+ ++ I+ ++
Sbjct: 284 EQLSVAEITNSAFEPASMMAKCDPRHGK---YMACCLMYRGDVVPKDVNAAVATIKTKRT 340
Query: 585 VNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----MLANHTNISSLFDRC------LTG 633
+ F+ W P G + ++ + P V ++ + M++N T ++ +F R +
Sbjct: 341 IQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTAVAEVFSRIDHKFDLMYA 400
Query: 634 KREAFLEQFRKEEM----FLESLDELDDSRREVDELVQE 668
KR AF+ + E M F E+ ++L ++ +E+ E
Sbjct: 401 KR-AFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAE 438
>gnl|CDD|214867 smart00864, Tubulin, Tubulin/FtsZ family, GTPase domain. This
domain is found in all tubulin chains, as well as the
bacterial FtsZ family of proteins. These proteins are
involved in polymer formation. Tubulin is the major
component of microtubules, while FtsZ is the
polymer-forming protein of bacterial cell division, it
is part of a ring in the middle of the dividing cell
that is required for constriction of cell membrane and
cell envelope to yield two daughter cells. FtsZ and
tubulin are GTPases, this entry is the GTPase domain.
FtsZ can polymerise into tubes, sheets, and rings in
vitro and is ubiquitous in bacteria and archaea.
Length = 192
Score = 179 bits (457), Expect = 2e-52
Identities = 64/238 (26%), Positives = 97/238 (40%), Gaps = 54/238 (22%)
Query: 32 HYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEI 91
P AV +DLEP VI + + A+ NPE++ K AGNNW G
Sbjct: 9 GGGPNAVNVDLEPGVIDGVRANTDAQALNPESLASGKIQ--AGNNWTRGL---------- 56
Query: 92 FDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGS 151
GAG + G++ EE D I E +G+
Sbjct: 57 -----------------------------GAGADPE----VGREAAEESLDEIREELEGA 83
Query: 152 DSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSL 211
D G + + GGTG+G + E +A + + P + VV+PYN+
Sbjct: 84 D---GVFITAGMGGGTGTGAAPVIAE-IAKEYGILTV-AVVTKP---FSFEGVVRPYNAE 135
Query: 212 LTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPS 269
L L+ L + D ++V+DN AL I C R P+F N L++ ++ T +R+P
Sbjct: 136 LGLEELREHVDSLIVIDNDALLDI-CGRKLPLRPAFKDANDLLAQAVSGITDLIRFPG 192
>gnl|CDD|240395 PTZ00387, PTZ00387, epsilon tubulin; Provisional.
Length = 465
Score = 188 bits (478), Expect = 2e-52
Identities = 125/452 (27%), Positives = 204/452 (45%), Gaps = 104/452 (23%)
Query: 36 RAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDII 95
RAVL+D+E V++ I+ SP ++FD
Sbjct: 63 RAVLVDMEEGVLNQILKSPLG---------------------------------DLFD-- 87
Query: 96 DREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQ-GKKLQEEIFDIIDREADGSDSL 154
EN ++S D GAGNNWA G+ + G K + I + + R+ + DSL
Sbjct: 88 ---------------ENFFVS-DVSGAGNNWAVGHMEYGDKYIDSISESVRRQVEQCDSL 131
Query: 155 EGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTL 214
+ F L HS+ GGTGSG+G+ +L L D FP VFP+ + DV+ PYNS L
Sbjct: 132 QSFFLMHSLGGGTGSGLGTRILGMLEDEFPHVFRFCPVVFPSAVD--DVITSPYNSFFAL 189
Query: 215 KRLTLNADCVVVLDNTALNRIA-------CDRLHIENPS--------------------F 247
+ L +ADCV+ LDN AL IA +L N +
Sbjct: 190 RELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQPHKYSVAKPTETKKLPY 249
Query: 248 AQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVA-S 306
++N++V+ +++ TS++R+ +N D+ + L+P PRLHFL + PL + +VA
Sbjct: 250 DKMNNIVAQLLSNLTSSMRFEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVAVG 309
Query: 307 IRKTTVLDVM-RRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRER 365
R+ LD M + L P + MV+ P+ Y++ I++G + V +++ R++E+
Sbjct: 310 PRR---LDQMFKDCLDPDHQMVAATPEA---GKYLATALIVRGPQNVSDVTRNILRLKEQ 363
Query: 366 KLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSGIS------WQLPKREA 419
+N I W+ G + L SP S L LAN+ I + +L KR++
Sbjct: 364 --LNMIYWNEDGFKTGLCNVSPL---GQPYSLLCLANNCCIRNKFESMLERFNKLYKRKS 418
Query: 420 FLEQFRKEEMFLESLDELDDSRREVDELVQEY 451
+ + E + D++ + L+ +Y
Sbjct: 419 HVHHY-TEYL---EQAYFDETLETIQNLIDDY 446
Score = 65.9 bits (161), Expect = 3e-11
Identities = 48/216 (22%), Positives = 89/216 (41%), Gaps = 45/216 (20%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNM- 519
+ +N D+ + L+P PRLHFL + PL + +VA + P+ +
Sbjct: 269 FEGSLNVDINEITTNLVPYPRLHFLTSSIAPLVSLKDVA--------------VGPRRLD 314
Query: 520 -MVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQR 578
M L P + MV+ P+ Y++ I++G + V +++ R
Sbjct: 315 QMFKDC------------LDPDHQMVAATPEA---GKYLATALIVRGPQNVSDVTRNILR 359
Query: 579 IRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTG----- 633
++E+ +N I W+ G + L SP S L LAN+ I + F+ L
Sbjct: 360 LKEQ--LNMIYWNEDGFKTGLCNVSPL---GQPYSLLCLANNCCIRNKFESMLERFNKLY 414
Query: 634 KREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
KR++ + + E + D++ + L+ +Y
Sbjct: 415 KRKSHVHHY-TEYL---EQAYFDETLETIQNLIDDY 446
>gnl|CDD|100018 cd02189, delta_tubulin, The tubulin superfamily includes five
distinct families, the alpha-, beta-, gamma-, delta-,
and epsilon-tubulins and a sixth family (zeta-tubulin)
which is present only in kinetoplastid protozoa. The
alpha- and beta-tubulins are the major components of
microtubules, while gamma-tubulin plays a major role in
the nucleation of microtubule assembly. The delta- and
epsilon-tubulins are widespread but unlike the alpha,
beta, and gamma-tubulins they are not ubiquitous among
eukaryotes. Delta-tubulin plays an essential role in
forming the triplet microtubules of centrioles and basal
bodies.
Length = 446
Score = 169 bits (431), Expect = 4e-46
Identities = 116/454 (25%), Positives = 197/454 (43%), Gaps = 100/454 (22%)
Query: 26 SGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGK 85
S D I R+VL+D+EP+VI E+ GG W
Sbjct: 46 SEKSDGQPIARSVLVDMEPKVI--------------ESTLSKSSGG----TWK------- 80
Query: 86 KLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYS-QGKKLQEEIFDII 144
Y+ +NV + G+GNNWA GY G +++E+I D+I
Sbjct: 81 ----------------------YDKKNVICQQ--SGSGNNWAYGYYVHGPQIKEDILDLI 116
Query: 145 DREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVV 204
+E + DS EGF++ HS+AGGTGSG+GS + E L D +P+ ++ V+P +V+
Sbjct: 117 RKEVEKCDSFEGFLVLHSLAGGTGSGLGSRVTELLRDEYPESLLLNIVVWPY--TTGEVI 174
Query: 205 VQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA----- 259
VQ YN++LTL L ++D +++L+N ++RI +++N S + IN +++ +A
Sbjct: 175 VQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQP 234
Query: 260 -----VSTSTLRYPSYMN-NDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKT--T 311
S L S ND L+ L P P L P E +A +
Sbjct: 235 SLDSTGSNGALAGRSTNPLND---LVEDLCPHPAYKLLTIRSLPQMPEKSLAFSTFSWSA 291
Query: 312 VLDVMRRLLQPKNMM--------------VSTAPDRMSQHCYMSILN--IIQGEVDPCQV 355
+L + ++L + M S S H S+ N I++G+ V
Sbjct: 292 LLKRLHQMLIAGSFMEEGIDWTVRPEGSAASLLSGNKSTHFNKSLANLLILRGK----DV 347
Query: 356 HKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNIS------SG 409
+ +R + R + ++ WSP+ ++ ++S + + S +++N I
Sbjct: 348 TSADER-KFRDPLLYVNWSPSPVRFSIS-SHKRSFSKYEKSVTLVSNSQTIIDPLDNILE 405
Query: 410 ISWQLPKREAFLEQFRK----EEMFLESLDELDD 439
+W + A+L Q+ K EE FL++ L+
Sbjct: 406 KAWNMFASGAYLHQYEKYGLEEEDFLDAFATLEQ 439
>gnl|CDD|215710 pfam00091, Tubulin, Tubulin/FtsZ family, GTPase domain. This
family includes the tubulin alpha, beta and gamma
chains, as well as the bacterial FtsZ family of
proteins. Members of this family are involved in polymer
formation. FtsZ is the polymer-forming protein of
bacterial cell division. It is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ and tubulin are GTPases. FtsZ
can polymerise into tubes, sheets, and rings in vitro
and is ubiquitous in eubacteria and archaea. Tubulin is
the major component of microtubules.
Length = 210
Score = 159 bits (404), Expect = 7e-45
Identities = 60/222 (27%), Positives = 94/222 (42%), Gaps = 57/222 (25%)
Query: 26 SGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGK 85
+ D Y PR + +D +P+V++ I KL+ N+ +G
Sbjct: 44 EESGDGVYGPRFIAIDTDPQVLNEIKAGN--KLFIGNNLTKGLEG--------------- 86
Query: 86 KLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIID 145
AGNN A GY K+ EE + I
Sbjct: 87 ------------------------------------AGNNPAVGYYTHKEAAEESLEEIR 110
Query: 146 READGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVV 205
+E + D L+GF + + GGTGSG + E L + + + FP S+ VV
Sbjct: 111 KELEKCDGLDGFFITAGLGGGTGSGAAPVIAEILKELY-GALTVAVVTFPF---TSEGVV 166
Query: 206 QPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSF 247
+PYN++L LK L ++D V+V+DN AL I ++L I++P+F
Sbjct: 167 RPYNAILGLKELIEHSDSVIVIDNDALLEICDNQLDIKSPAF 208
>gnl|CDD|214868 smart00865, Tubulin_C, Tubulin/FtsZ family, C-terminal domain.
This domain is found in the tubulin alpha, beta and
gamma chains, as well as the bacterial FtsZ family of
proteins. These proteins are GTPases and are involved in
polymer formation. Tubulin is the major component of
microtubules, while FtsZ is the polymer-forming protein
of bacterial cell division, it is part of a ring in the
middle of the dividing cell that is required for
constriction of cell membrane and cell envelope to yield
two daughter cells. FtsZ can polymerise into tubes,
sheets, and rings in vitro and is ubiquitous in bacteria
and archaea. This is the C-terminal domain.
Length = 120
Score = 67.2 bits (165), Expect = 2e-13
Identities = 29/146 (19%), Positives = 57/146 (39%), Gaps = 39/146 (26%)
Query: 271 MNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMR--RLLQPKNMMVS 328
+N D + ++P F M G P + E+ R ++ LL+ N+M +
Sbjct: 1 INVDFADVKTVMVPMG---FAMMGIGPASGEN-----RALEAAELAISSPLLEDSNIMGA 52
Query: 329 TAPDRMSQHCYMSILNIIQG-EVDPCQVHKSLQRIRERKL-VNFIPWSPA-GIQVALSKK 385
++NI G ++ +V+++++RIRE+ FI W P ++
Sbjct: 53 KGV----------LVNITGGPDLTLKEVNEAMERIREKADPDAFIIWGPVIDEELG---- 98
Query: 386 SPYVPTSHRVSGLMLANHTNISSGIS 411
+ + T I++GI
Sbjct: 99 ---------GDEIRV---TVIATGIG 112
Score = 61.4 bits (150), Expect = 2e-11
Identities = 31/169 (18%), Positives = 57/169 (33%), Gaps = 56/169 (33%)
Query: 465 MNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVASI 524
+N D + ++P F M G P + E+ R ++
Sbjct: 1 INVDFADVKTVMVPMG---FAMMGIGPASGEN-----RALEAAELAIS------------ 40
Query: 525 RKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQG-EVDPCQVHKSLQRIRERK 583
LL+ N+M + ++NI G ++ +V+++++RIRE+
Sbjct: 41 ---------SPLLEDSNIMGAKGV----------LVNITGGPDLTLKEVNEAMERIREKA 81
Query: 584 L-VNFIPWSPA-GIQVALSKKSPYVPTSHRVSGLMLAN-HTNISSLFDR 629
FI W P ++ + + T I SLF R
Sbjct: 82 DPDAFIIWGPVIDEELG-------------GDEIRVTVIATGIGSLFKR 117
>gnl|CDD|100022 cd02202, FtsZ_type2, FtsZ is a GTPase that is similar to the
eukaryotic tubulins and is essential for cell division
in prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 349
Score = 45.8 bits (109), Expect = 5e-05
Identities = 31/139 (22%), Positives = 57/139 (41%), Gaps = 14/139 (10%)
Query: 118 DGGGAGNNWASGYSQGKKLQEEIFDIIDREAD--GSDSLEGFVLCHSIAGGTGSGMGSYL 175
G G G + G ++ EE + + R D G+ + ++ + GGTGSG L
Sbjct: 64 KGHGVGADRELG----AEVAEEDLEEVMRAIDDRGTSDADAILVIAGLGGGTGSGGAPVL 119
Query: 176 LEHLADRFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRI 235
+ L ++ + V P ++E N+ +L L+ AD +++ DN A R
Sbjct: 120 AKELK-ERYEEPVYALGVLPAREEGERY---SANAARSLDALSEEADAIILFDNDAWKRK 175
Query: 236 ACDRLHIENPSFAQINSLV 254
++ +IN +
Sbjct: 176 GESVEE----AYDRINEEI 190
>gnl|CDD|100020 cd02191, FtsZ, FtsZ is a GTPase that is similar to the eukaryotic
tubulins and is essential for cell division in
prokaryotes. FtsZ is capable of polymerizing in a
GTP-driven process into structures similar to those
formed by tubulin. FtsZ forms a ring-shaped septum at
the site of bacterial cell division, which is required
for constriction of cell membrane and cell envelope to
yield two daughter cells.
Length = 303
Score = 38.3 bits (89), Expect = 0.009
Identities = 58/299 (19%), Positives = 102/299 (34%), Gaps = 47/299 (15%)
Query: 71 GGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSK---DGGGAGNNWA 127
GGAG N + + +E + D D L L V + + G GAG N
Sbjct: 9 GGAGGNIVDKF---LEYDKEGRSAVAVNTDAQDLLGLEAENRVLIGQARTKGLGAGANPE 65
Query: 128 SGYSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKI 187
G +++QE I +I D + F+ + GGTG+G + EHL K+I
Sbjct: 66 LGAEAAEEVQEAIDNIPV----HVDMV--FITA-GLGGGTGTGGAPVVAEHL-----KRI 113
Query: 188 -IQTYSV--FPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIEN 244
T +V P DE ++ N+ + L D ++V+ N L +I E
Sbjct: 114 GTLTVAVVTLPFSDEGG---IRMLNAAEGFQTLVREVDNLMVIPNEKLRQI------GEK 164
Query: 245 PS----FAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTA 300
S F + ++ + + +N D + + M GY
Sbjct: 165 ASLEGAFDHADEVLVRAVGGLFGAIEIEGEINVDFADVKNVM---DGGGVAMVGYGSEDV 221
Query: 301 EHEVASIRKTTVLDVMRRLLQPKN-------MMVSTAPDRMSQHCYMSILNIIQGEVDP 352
+ + + LL P ++V P ++ + ++ +
Sbjct: 222 TNR---ATEAVRKAALGPLLLPCEIEGAEGALLVMAGPPDLNLKEIERVRKWLEEQTGE 277
>gnl|CDD|100024 cd06060, misato, Human Misato shows similarity with Tubulin/FtsZ
family of GTPases and is localized to the the outer
membrane of mitochondria. It has a role in mitochondrial
fusion and in mitochondrial distribution and morphology.
Mutations in its Drosophila homolog (misato) lead to
irregular chromosome segregation during mitosis.
Deletion of the budding yeast homolog DML1 is lethal and
unregulate expression of DML1 leads to mitochondrial
dispersion and abnormalities in cell morphology. The
Misato/DML1 protein family is conserved from yeast to
human, but its exact function is still unknown.
Length = 493
Score = 35.4 bits (82), Expect = 0.10
Identities = 40/154 (25%), Positives = 65/154 (42%), Gaps = 20/154 (12%)
Query: 130 YSQGKKL------QEEIFDIIDREADGSDSLEGF-VLCHSIAGGTGSGMGSYLLEHLADR 182
+ QG+ L QEE D + + D L+GF VLC G SG+G+ LEHL D
Sbjct: 121 FGQGESLWQDESFQEEFEDRLRFYVEECDYLQGFQVLCDLHDGF--SGVGAKCLEHLQDE 178
Query: 183 FPKKIIQT---YSVFPNQDEISDVVVQPYNSLLTLKRLTLNAD--CVVVLDNTALNR--- 234
+ K + V P ++ N+ L L +L+ ++ + L T +
Sbjct: 179 YGKASLLFPGLPPVIPPDASSDKNSIRVLNTALGLAQLSEHSSLFVPLSLSGTLWRKPGP 238
Query: 235 -IACDRLHIENPSFAQINSLVSTIMAVSTSTLRY 267
L+ + ++L++T A+ T TL Y
Sbjct: 239 PRTFPYLNYDAELPYHTSALLAT--ALDTLTLPY 270
>gnl|CDD|222394 pfam13809, Tubulin_2, Tubulin like. Many of the residues conserved
in Tubulin, pfam00091, are also highly conserved in this
family.
Length = 345
Score = 35.0 bits (81), Expect = 0.13
Identities = 42/143 (29%), Positives = 60/143 (41%), Gaps = 27/143 (18%)
Query: 55 YAKLYNPENV-YL----SKDGGGAGNNWASGYSQGKKLQEEIFDIIDRE--ADGSDSLEL 107
Y L NP V +L K+ G + + G K E+I+ + E A D LEL
Sbjct: 24 YGGLENPPIVSFLYVDTDKNEMGESDKNSKGLGISLKESEKIYAFVTSENLAKILDRLEL 83
Query: 108 YN-------PENVYLSKDG-GGAGNNWASG----YSQGKKLQEEIFDIIDR---EADGSD 152
Y PE V GAG A G + + +++ I + R ++G
Sbjct: 84 YPHIAEWFPPELVENITSIEAGAGQIRAVGRLAFFHNYQAIRQAIETALKRTFLLSEGQK 143
Query: 153 SLEG----FVLCHSIAGGTGSGM 171
EG FV+ S++GGTGSGM
Sbjct: 144 VGEGGVNVFVVG-SLSGGTGSGM 165
>gnl|CDD|225483 COG2931, COG2931, RTX toxins and related Ca2+-binding proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 510
Score = 34.2 bits (78), Expect = 0.28
Identities = 25/106 (23%), Positives = 43/106 (40%), Gaps = 16/106 (15%)
Query: 71 GGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDG-----GGAGNN 125
GGAGN+ G + D + G+D+L+ + G GGAGN+
Sbjct: 280 GGAGNDTLLGGAGN--------DTLTIGGGGNDTLDGGAGNDTLDFSGGDDTIYGGAGND 331
Query: 126 WASGYSQGKKLQEEIF--DIIDREADGSDSLEGFVLCHSIAGGTGS 169
G + L +++ DG+D++ G ++ GG G+
Sbjct: 332 TLDGGAGNDTLAGNAGALALLNGG-DGNDTISGNDGNDTLIGGAGN 376
>gnl|CDD|223284 COG0206, FtsZ, Cell division GTPase [Cell division and chromosome
partitioning].
Length = 338
Score = 31.5 bits (72), Expect = 1.5
Identities = 28/120 (23%), Positives = 45/120 (37%), Gaps = 16/120 (13%)
Query: 119 GGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEH 178
G GAG N G EE + I+ G+D + + GGTG+G + E
Sbjct: 68 GLGAGANPEVGR----AAAEESIEEIEEALKGADM---VFVTAGMGGGTGTGAAPVVAEI 120
Query: 179 LADRFPKKIIQTYSVF--PNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIA 236
+ T +V P E S + N+ ++ L D ++V+ N L +
Sbjct: 121 AK----ELGALTVAVVTLPFSFEGS---PRMENAEEGIEELREVVDTLIVIPNDKLLKGK 173
>gnl|CDD|224700 COG1786, COG1786, Swiveling domain associated with predicted
aconitase [Energy production and conversion].
Length = 131
Score = 29.6 bits (67), Expect = 2.3
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 5/50 (10%)
Query: 142 DIIDREADGS-DSLEGFVLCHSIAGGTGSGMGSYLLEHLADR--FPKKII 188
+ID +SL G +L GG GS +GSY+L LA P I+
Sbjct: 36 KVIDPHHPLHGESLTGKIL--VFPGGRGSTVGSYVLYELAKNGRAPAAIV 83
>gnl|CDD|215055 PLN00101, PLN00101, Photosystem I light-harvesting complex type 4
protein; Provisional.
Length = 250
Score = 30.3 bits (68), Expect = 2.6
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Query: 156 GFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYS 192
GFV+ H++ TG G LL+HL+D + I+QT S
Sbjct: 217 GFVVQHNV---TGKGPFENLLQHLSDPWHNTIVQTLS 250
>gnl|CDD|215360 PLN02672, PLN02672, methionine S-methyltransferase.
Length = 1082
Score = 30.5 bits (69), Expect = 4.1
Identities = 13/30 (43%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
Query: 19 GAGNNWASGADDEHYIPRAVL-LDLEPRVI 47
G GN W S A E ++P V LD+ PR +
Sbjct: 126 GCGNGWISIAIAEKWLPSKVYGLDINPRAV 155
>gnl|CDD|218380 pfam05010, TACC, Transforming acidic coiled-coil-containing protein
(TACC). This family contains the proteins TACC 1, 2 and
3 the genes for which are found concentrated in the
centrosomes of eukaryotic and may play a conserved role
in organising centrosomal microtubules. The human TACC
proteins have been linked to cancer and TACC2 has been
identified as a possible tumour suppressor (AZU-1). The
functional homologue (Alp7) in Schizosaccharomyces pombe
has been shown to be required for organisation of
bipolar spindles.
Length = 207
Score = 29.7 bits (67), Expect = 4.5
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 423 QFRKEEMFLESLDE-LDDSRREVDELVQ 449
RKE+M ++SL+E L+ +E +EL +
Sbjct: 169 SLRKEQMKVQSLEETLEQKNKENEELTK 196
Score = 29.7 bits (67), Expect = 4.5
Identities = 11/28 (39%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Query: 641 QFRKEEMFLESLDE-LDDSRREVDELVQ 667
RKE+M ++SL+E L+ +E +EL +
Sbjct: 169 SLRKEQMKVQSLEETLEQKNKENEELTK 196
>gnl|CDD|232805 TIGR00065, ftsZ, cell division protein FtsZ. This family consists
of cell division protein FtsZ, a GTPase found in
bacteria, the chloroplast of plants, and in
archaebacteria. Structurally similar to tubulin, FtsZ
undergoes GTP-dependent polymerization into filaments
that form a cytoskeleton involved in septum synthesis
[Cellular processes, Cell division].
Length = 349
Score = 29.6 bits (67), Expect = 5.1
Identities = 19/54 (35%), Positives = 27/54 (50%), Gaps = 11/54 (20%)
Query: 119 GGGAGNNWASGYSQ-GKKLQEEIFDIIDREADGSDSLEGFV-LCHSIAGGTGSG 170
G GAG G + G+K EE D I + +G+D V + + GGTG+G
Sbjct: 74 GLGAG-----GNPEIGRKAAEESRDEIRKLLEGAD----MVFITAGMGGGTGTG 118
>gnl|CDD|215464 PLN02860, PLN02860, o-succinylbenzoate-CoA ligase.
Length = 563
Score = 29.8 bits (67), Expect = 6.3
Identities = 21/101 (20%), Positives = 35/101 (34%), Gaps = 16/101 (15%)
Query: 246 SFAQINS---LVSTIMAVSTSTLR--YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTA 300
SF + S LV +M V+ T Y N+ +P+ + +
Sbjct: 92 SFEEAKSAMLLVRPVMLVTDETCSSWYEELQNDR--------LPSLMWQVFL-ESPSSSV 142
Query: 301 EHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMS 341
+ S T +L +R L + + APD C+ S
Sbjct: 143 FIFLNSFLTTEML--KQRALGTTELDYAWAPDDAVLICFTS 181
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 29.7 bits (67), Expect = 7.3
Identities = 9/37 (24%), Positives = 21/37 (56%)
Query: 633 GKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
K E + R+E +E+ ++L++ E+++L +E
Sbjct: 661 EKVEELEAEIRRELQRIENEEQLEEKLEELEQLEEEL 697
Score = 29.3 bits (66), Expect = 9.1
Identities = 9/36 (25%), Positives = 21/36 (58%)
Query: 416 KREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 451
K E + R+E +E+ ++L++ E+++L +E
Sbjct: 662 KVEELEAEIRRELQRIENEEQLEEKLEELEQLEEEL 697
>gnl|CDD|132364 TIGR03321, alt_F1F0_F0_B, alternate F1F0 ATPase, F0 subunit B. A
small number of taxonomically diverse prokaryotic
species, including Methanosarcina barkeri, have what
appears to be a second ATP synthase, in addition to the
normal F1F0 ATPase in bacteria and A1A0 ATPase in
archaea. These enzymes use ion gradients to synthesize
ATP, CC and in principle may run in either direction.
This model represents the F0 subunit B of this apparent
second ATP synthase.
Length = 246
Score = 28.9 bits (65), Expect = 9.4
Identities = 31/130 (23%), Positives = 47/130 (36%), Gaps = 29/130 (22%)
Query: 583 KLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTGKREA----- 637
+L+NF+ I V L K+ Y + M A I+ T KREA
Sbjct: 11 QLINFL------ILVWLLKRFLY----RPILDAMDAREKKIAGELADADTKKREAEQERR 60
Query: 638 -------FLEQFR-------KEEMFLESLDELDDSRREVDELVQEYCAATRPDYLSWGGA 683
L+Q R KEE E LD++R E DE+ +++ A R + +
Sbjct: 61 EYEEKNEELDQQREVLLTKAKEEAQAERQRLLDEAREEADEIREKWQEALRREQAALSDE 120
Query: 684 KSEEIIDRIL 693
+
Sbjct: 121 LRRRTGAEVF 130
>gnl|CDD|171518 PRK12463, PRK12463, chorismate synthase; Reviewed.
Length = 390
Score = 28.9 bits (64), Expect = 9.4
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 134 KKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYL 175
K +++E+ D ID DS+ G V IA G G+GSY+
Sbjct: 196 KTVEQEMMDAIDNAKSSGDSIGGIV--EVIAEGMPIGVGSYV 235
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.135 0.396
Gapped
Lambda K H
0.267 0.0807 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 36,488,841
Number of extensions: 3660204
Number of successful extensions: 3624
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3490
Number of HSP's successfully gapped: 87
Length of query: 695
Length of database: 10,937,602
Length adjustment: 104
Effective length of query: 591
Effective length of database: 6,324,786
Effective search space: 3737948526
Effective search space used: 3737948526
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 62 (27.5 bits)