RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy3432
(695 letters)
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule,
nucleation, GTPase, lateral interaction, structural
protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB:
1z5v_A* 1z5w_A*
Length = 475
Score = 538 bits (1389), Expect = 0.0
Identities = 312/439 (71%), Positives = 349/439 (79%), Gaps = 55/439 (12%)
Query: 28 ADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKL 87
ADDEHYIPRAVLLDLEPRVIH+I+NSPYAKLYNPEN+YLS+ GGGAGNNWASG+SQG+K+
Sbjct: 55 ADDEHYIPRAVLLDLEPRVIHSILNSPYAKLYNPENIYLSEHGGGAGNNWASGFSQGEKI 114
Query: 88 QEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDRE 147
E+IFDIIDREADGSDSLE
Sbjct: 115 HEDIFDIIDREADGSDSLE----------------------------------------- 133
Query: 148 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQP 207
GFVLCHSIAGGTGSG+GSYLLE L DR+PKK++QTYSVFPNQDE+SDVVVQP
Sbjct: 134 --------GFVLCHSIAGGTGSGLGSYLLERLNDRYPKKLVQTYSVFPNQDEMSDVVVQP 185
Query: 208 YNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRY 267
YNSLLTLKRLT NADC+VVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+ ST+TLRY
Sbjct: 186 YNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLRY 245
Query: 268 PSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMV 327
P YMNNDLIGLIA LIPTPRLHFLMTGYTPLT + VAS+RKTTVLDVMRRLLQPKN+MV
Sbjct: 246 PGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVMV 305
Query: 328 STAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSP 387
ST DR + HCY++ILNIIQGEVDP QVHKSLQRIRERKL NFIPW PA IQVALS+KSP
Sbjct: 306 STGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIRERKLANFIPWGPASIQVALSRKSP 365
Query: 388 YVPTSHRVSGLMLANHTNIS---SGISWQ---LPKREAFLEQFRKEEMFLESLDELDDSR 441
Y+P++HRVSGLM+ANHT+IS Q L KREAFLEQFRKE+MF ++ DE+D SR
Sbjct: 366 YLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKREAFLEQFRKEDMFKDNFDEMDTSR 425
Query: 442 REVDELVQEYCAATRPDYL 460
V +L+ EY AATRPDY+
Sbjct: 426 EIVQQLIDEYHAATRPDYI 444
Score = 250 bits (641), Expect = 8e-76
Identities = 153/235 (65%), Positives = 176/235 (74%), Gaps = 28/235 (11%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
YP YMNNDLIGLIA LIPTPRLHFLMTGYTPLT + VAS+RKTTVLDVMRRLLQPKN+M
Sbjct: 245 YPGYMNNDLIGLIASLIPTPRLHFLMTGYTPLTTDQSVASVRKTTVLDVMRRLLQPKNVM 304
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
V ST DR + HCY++ILNIIQGEVDP QVHKSLQRIR
Sbjct: 305 V-----------------------STGRDRQTNHCYIAILNIIQGEVDPTQVHKSLQRIR 341
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTG-----KR 635
ERKL NFIPW PA IQVALS+KSPY+P++HRVSGLM+ANHT+ISSLF+R KR
Sbjct: 342 ERKLANFIPWGPASIQVALSRKSPYLPSAHRVSGLMMANHTSISSLFERTCRQYDKLRKR 401
Query: 636 EAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPDYLSWGGAKSEEIID 690
EAFLEQFRKE+MF ++ DE+D SR V +L+ EY AATRPDY+SWG + ++
Sbjct: 402 EAFLEQFRKEDMFKDNFDEMDTSREIVQQLIDEYHAATRPDYISWGTQEQVDVDG 456
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3hke_A*
3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A*
3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* 2p4n_A* 1jff_A*
2wbe_A* 3dco_A* ...
Length = 451
Score = 460 bits (1186), Expect = e-157
Identities = 119/445 (26%), Positives = 205/445 (46%), Gaps = 73/445 (16%)
Query: 28 ADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKL 87
++PRAV +DLEP VI + Y +L++PE + K+ A NN+A G+
Sbjct: 56 TGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKED--AANNYARGH------ 107
Query: 88 QEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDRE 147
Y+ GK++ + + D I +
Sbjct: 108 ------------------------------------------YTIGKEIIDLVLDRIRKL 125
Query: 148 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQP 207
AD L+GF++ HS GGTGSG S L+E L+ + KK +S++P ++S VV+P
Sbjct: 126 ADQCTGLQGFLVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPA-PQVSTAVVEP 184
Query: 208 YNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRY 267
YNS+LT ++DC ++DN A+ I L IE P++ +N L+S I++ T++LR+
Sbjct: 185 YNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLRF 244
Query: 268 PSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMV 327
+N DL L+P PR+HF + Y P+ + E A + +V ++ +P N MV
Sbjct: 245 DGALNVDLTEFQTNLVPYPRIHFPLATYAPVIS-AEKAYHEQLSVAEITNACFEPANQMV 303
Query: 328 STAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSP 387
P YM+ + +G+V P V+ ++ I+ ++ + F+ W P G +V ++ + P
Sbjct: 304 KCDP---RHGKYMACCLLYRGDVVPKDVNAAIATIKTKRSIQFVDWCPTGFKVGINYQPP 360
Query: 388 YVPTSHRVSGL-----MLANHTNISSGISWQLP--------KREAFLEQFRKEEMFLESL 434
V ++ + ML+N T I+ +W + AF+ + E M
Sbjct: 361 TVVPGGDLAKVQRAVCMLSNTTAIAE--AWARLDHKFDLMYAKRAFVHWYVGEGME---E 415
Query: 435 DELDDSRREVDELVQEYCAATRPDY 459
E ++R ++ L ++Y
Sbjct: 416 GEFSEAREDMAALEKDYEEVGVDSV 440
Score = 212 bits (542), Expect = 7e-62
Identities = 49/237 (20%), Positives = 94/237 (39%), Gaps = 40/237 (16%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+ +N DL L+P PR+HF + Y P+ + +
Sbjct: 244 FDGALNVDLTEFQTNLVPYPRIHFPLATYAPVISAEK----------------------- 280
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
A + +V ++ +P N MV P YM+ + +G+V P V+ ++ I+
Sbjct: 281 -AYHEQLSVAEITNACFEPANQMVKCDP---RHGKYMACCLLYRGDVVPKDVNAAIATIK 336
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGL-----MLANHTNISSLFDRCLTG-- 633
++ + F+ W P G +V ++ + P V ++ + ML+N T I+ + R
Sbjct: 337 TKRSIQFVDWCPTGFKVGINYQPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFD 396
Query: 634 ---KREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPDYLSWGGAKSEE 687
+ AF+ + E M E ++R ++ L ++Y G + EE
Sbjct: 397 LMYAKRAFVHWYVGEGME---EGEFSEAREDMAALEKDYEEVGVDSVEGEGEEEGEE 450
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase,
microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A
{Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3hke_B*
3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B*
1z2b_B* 2xrp_A* 1tvk_B* 1tub_B* 1jff_B* 1ia0_B* 1ffx_B*
1sa0_B* 1sa1_B* ...
Length = 445
Score = 453 bits (1167), Expect = e-154
Identities = 127/444 (28%), Positives = 216/444 (48%), Gaps = 67/444 (15%)
Query: 22 NNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGY 81
N + + A Y+PRA+L+DLEP + ++ + P+ +++ P+N + G AGNNWA G+
Sbjct: 48 NVYYNEATGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSG--AGNNWAKGH 105
Query: 82 SQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 141
Y++G +L + +
Sbjct: 106 ------------------------------------------------YTEGAELVDSVL 117
Query: 142 DIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEIS 201
D++ +E++ D L+GF L HS+ GGTGSGMG+ L+ + + +P +I+ T+SV P+ ++S
Sbjct: 118 DVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVMPS-PKVS 176
Query: 202 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 261
D VV+PYN+ L++ +L N D +DN AL I L + P++ +N LVS M+
Sbjct: 177 DTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV 236
Query: 262 TSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQ 321
T+ LR+P +N DL L ++P PRLHF M G+ PLT+ R TV ++ +++
Sbjct: 237 TTCLRFPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTS-RGSQQYRALTVPELTQQMFD 295
Query: 322 PKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVA 381
KNMM + P Y+++ I +G + +V + + I+ + F+ W P ++ A
Sbjct: 296 SKNMMAACDP---RHGRYLTVATIFRGRMSMKEVDEQMLNIQNKNSSYFVEWIPNNVKTA 352
Query: 382 LSKKSPYVPTSHRVSGLMLANHTNIS---SGISWQ---LPKREAFLEQFRKEEMFLESLD 435
+ P ++S + N T I IS Q + +R+AFL + E M
Sbjct: 353 VCDIP---PRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD---EM 406
Query: 436 ELDDSRREVDELVQEYCAATRPDY 459
E ++ +++LV EY
Sbjct: 407 EFTEAESNMNDLVSEYQQYQDATA 430
Score = 205 bits (524), Expect = 2e-59
Identities = 55/232 (23%), Positives = 93/232 (40%), Gaps = 38/232 (16%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N DL L ++P PRLHF M G+ PLT+
Sbjct: 242 FPGQLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRGS----------------------- 278
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
R TV ++ +++ KNMM + P Y+++ I +G + +V + + I+
Sbjct: 279 -QQYRALTVPELTQQMFDSKNMMAACDP---RHGRYLTVATIFRGRMSMKEVDEQMLNIQ 334
Query: 581 ERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTG-----KR 635
+ F+ W P ++ A+ P ++S + N T I LF R +R
Sbjct: 335 NKNSSYFVEWIPNNVKTAVCDIP---PRGLKMSSTFIGNSTAIQELFKRISEQFTAMFRR 391
Query: 636 EAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPDYLSWGGAKSEE 687
+AFL + E M E ++ +++LV EY G + EE
Sbjct: 392 KAFLHWYTGEGMD---EMEFTEAESNMNDLVSEYQQYQDATADEQGEFEEEE 440
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex,
bacterial tubulin, cytoskeleton, polymerization,
verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter
dejongeii}
Length = 426
Score = 450 bits (1159), Expect = e-153
Identities = 126/460 (27%), Positives = 211/460 (45%), Gaps = 75/460 (16%)
Query: 7 NPENVYLSKDGGGAGNNWA---SGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPEN 63
A +N D Y+PRAVL+DLEP VI I ++L++ +
Sbjct: 31 TEAGTLKEGSNAAANSNMEVFFHKVRDGKYVPRAVLVDLEPGVIARIEGGDMSQLFDESS 90
Query: 64 VYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAG 123
+ GA NNWA GY
Sbjct: 91 IVRKI--PGAANNWARGY------------------------------------------ 106
Query: 124 NNWASGYSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRF 183
+G+K+ ++I ++ID + + L+GF++ HSI GG+GSG+GS +LE L +
Sbjct: 107 ------NVEGEKVIDQIMNVIDSAVEKTKGLQGFLMTHSIGGGSGSGLGSLILERLRQAY 160
Query: 184 PKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIE 243
PKK I T+SV P+ ISD V+PYN++LTL+R+ NAD V+LDN AL RIA +L+
Sbjct: 161 PKKRIFTFSVVPS-PLISDSAVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-R 218
Query: 244 NPSFAQINSLVSTIMAVSTSTLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHE 303
+P++ +N++++ I++ T++LR+P +N DL + L+P P HFL + P+
Sbjct: 219 SPNYMDLNNIIALIVSSVTASLRFPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGA-G 277
Query: 304 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 363
+T D+ R N + Q Y++ + +G+V V +++ IR
Sbjct: 278 QEGQVRTNFPDLARETFAQDNFTAAIDW---QQGVYLAASALFRGDVKAKDVDENMATIR 334
Query: 364 ERKLVNFIPWSPA--GIQVALSKKSPYVPTSHRVSGLMLANHTNISSGIS------WQLP 415
+ +N+ + PA G+++ ++ + P SGL L NHT I++ +
Sbjct: 335 KS--LNYASYMPASGGLKLGYAETA---PEGFASSGLALVNHTGIAAVFERLIAQFDIMF 389
Query: 416 KREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAAT 455
A+ + + D + +R ++ L Q Y A+
Sbjct: 390 DNHAYTHWYENAGVS---RDMMAKARNQIATLAQSYRDAS 426
Score = 193 bits (491), Expect = 7e-55
Identities = 44/220 (20%), Positives = 85/220 (38%), Gaps = 42/220 (19%)
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMM 520
+P +N DL + L+P P HFL + P+ +
Sbjct: 242 FPGKLNTDLSEFVTNLVPFPGNHFLTASFAPMRGAGQ----------------------- 278
Query: 521 VASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIR 580
+T D+ R N + Q Y++ + +G+V V +++ IR
Sbjct: 279 -EGQVRTNFPDLARETFAQDNFTAAIDW---QQGVYLAASALFRGDVKAKDVDENMATIR 334
Query: 581 ERKLVNFIPWSPA--GIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTG----- 633
+ +N+ + PA G+++ ++ + P SGL L NHT I+++F+R +
Sbjct: 335 KS--LNYASYMPASGGLKLGYAETA---PEGFASSGLALVNHTGIAAVFERLIAQFDIMF 389
Query: 634 KREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAAT 673
A+ + + D + +R ++ L Q Y A+
Sbjct: 390 DNHAYTHWYENAGVS---RDMMAKARNQIATLAQSYRDAS 426
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton,
protein COM cytoskeletal protein; HET: GTP; 2.5A
{Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB:
2btq_A*
Length = 473
Score = 445 bits (1146), Expect = e-151
Identities = 113/468 (24%), Positives = 213/468 (45%), Gaps = 78/468 (16%)
Query: 7 NPENVYLSKDGGGAGN-----NWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNP 61
+P + GN + + Y+PRA+++DLEP VI + + L+NP
Sbjct: 33 DPLTGQTAPGVAPRGNWSSFFSKLGESSSGSYVPRAIMVDLEPSVIDNVK-ATSGSLFNP 91
Query: 62 ENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGG 121
N+ +G AG N+A GY
Sbjct: 92 ANLISRTEG--AGGNFAVGY---------------------------------------- 109
Query: 122 AGNNWASGYSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLAD 181
G+++ E+ +D E D D++ G ++ H+I GGTGSG G+ L+E L +
Sbjct: 110 --------LGAGREVLPEVMSRLDYEIDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKE 161
Query: 182 RFPKKIIQTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241
++ + + + +V P+ ++S VV +PYN++ L L +AD ++ DN AL +A + +
Sbjct: 162 KYGEIPVLSCAVLPS-PQVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWN 220
Query: 242 IENPSFAQINSLVSTIMAVSTSTLRYPSYMNND--LIGLIAPLIPTPRLHFLMTGYTPLT 299
IE+P+ +N L++ +A T+++R+ ++ + L L+ L+P P LHFLM + PLT
Sbjct: 221 IESPTVDDLNLLITEALAGITASMRFSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLT 280
Query: 300 AEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQV-HKS 358
+ + + + ++++ L ++ + +P + ++S + +G ++ + +
Sbjct: 281 PP-DRSKFEELGIEEMIKSLFDNGSVFAACSP---MEGRFLSTAVLYRGIMEDKPLADAA 336
Query: 359 LQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNIS---SGISWQ-- 413
L +RE+ + W P ++ ++ SHR S ++LAN+T I+ I
Sbjct: 337 LAAMREK--LPLTYWIPTAFKIGYVEQP---GISHRKSMVLLANNTEIARVLDRICHNFD 391
Query: 414 -LPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPDYL 460
L +R+AF + E M ++++ R ELVQ Y A
Sbjct: 392 KLWQRKAFANWYLNEGMS---EEQINVLRASAQELVQSYQVAEESGAK 436
Score = 195 bits (498), Expect = 2e-55
Identities = 45/235 (19%), Positives = 94/235 (40%), Gaps = 43/235 (18%)
Query: 461 YPSYMNND--LIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKN 518
+ ++ + L L+ L+P P LHFLM + PLT
Sbjct: 246 FSGFLTVEISLRELLTNLVPQPSLHFLMCAFAPLTPPDR--------------------- 284
Query: 519 MMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQV-HKSLQ 577
+ + + ++++ L ++ + +P + ++S + +G ++ + +L
Sbjct: 285 ---SKFEELGIEEMIKSLFDNGSVFAACSP---MEGRFLSTAVLYRGIMEDKPLADAALA 338
Query: 578 RIRERKLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTG---- 633
+RE+ + W P ++ ++ SHR S ++LAN+T I+ + DR
Sbjct: 339 AMREK--LPLTYWIPTAFKIGYVEQP---GISHRKSMVLLANNTEIARVLDRICHNFDKL 393
Query: 634 -KREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATRPDYLSWGGAKSEE 687
+R+AF + E M ++++ R ELVQ Y A + + +
Sbjct: 394 WQRKAFANWYLNEGMS---EEQINVLRASAQELVQSYQVAEESGAKAKVQDSAGD 445
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related,
rossmann fold, GTP bindi structural protein; 2.30A
{Clostridium botulinum C}
Length = 360
Score = 71.6 bits (175), Expect = 1e-13
Identities = 32/209 (15%), Positives = 60/209 (28%), Gaps = 27/209 (12%)
Query: 71 GGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGY 130
G G N ++ + D L + ++ Y G G
Sbjct: 13 GQGGGNIVDTLLG----ICGDYNALFINTSKKDLDSLKHAKHTYHIPYAEGCGKERKKAV 68
Query: 131 SQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQT 190
+ ++I I + D + ++AGG GSG+ +L +P K
Sbjct: 69 GYAQTYYKQIIAQIMEKFSSCDI---VIFVATMAGGAGSGITPPILGLAKQMYPNKHFGF 125
Query: 191 YSVFPNQDEISDVVVQPYNSLLTLKRLTLNAD-----CVVVLDNTALNRIACDRLHIENP 245
V P E D N++ + + + + +LDN
Sbjct: 126 VGVLPKATEDIDEH---MNAIACWNDIMRSTNEGKDISIYLLDNNKRE------------ 170
Query: 246 SFAQINSLVSTIMAVSTSTLRYPSYMNND 274
+ IN +T+ + + D
Sbjct: 171 KESDINKEFATLFNDFMNMSESHAEGVVD 199
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 69.7 bits (170), Expect = 2e-12
Identities = 103/630 (16%), Positives = 180/630 (28%), Gaps = 259/630 (41%)
Query: 153 SLEGFVLCHSIAGGTGSGMGSYLLEH--------------LADRFPKKIIQTYSVFPNQD 198
S L H GS LEH L ++F K + + F D
Sbjct: 5 STRPLTLSH----------GS--LEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD 52
Query: 199 EISDVV-------------VQP-----YNSLLTLKRLTLNADCVVVLDNTALNRIACDRL 240
E + V+P ++ +L L L L+ ++ +A L
Sbjct: 53 EPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL---NLCLTEFENCYLEGNDIHALAAKLL 109
Query: 241 HIENPSFAQINSLV------------------------------STIMAV-----STST- 264
+ + + L+ + ++A+ +T
Sbjct: 110 QENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDDY 169
Query: 265 ---LR--YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRL 319
LR Y +Y L+ LI L A T L+++ L
Sbjct: 170 FEELRDLYQTYH-----VLVGDLIKFSAETLS-----ELIRTTLDAEKVFTQGLNILEWL 219
Query: 320 LQPKNMMVSTAPDR--MSQHCYMS--ILNIIQGEVDPCQVHKSLQRIRERKLVNFIP--- 372
P S PD+ + +S ++ +IQ L +++
Sbjct: 220 ENP-----SNTPDKDYLL-SIPISCPLIGVIQ-------------------LAHYVVTAK 254
Query: 373 ---WSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSGISWQLPKREAFLEQFRK--E 427
++P ++ L + GL+ A I+ SW E+F RK
Sbjct: 255 LLGFTPGELRSYLKG------ATGHSQGLVTA--VAIAETDSW-----ESFFVSVRKAIT 301
Query: 428 EMF---LES----------LDELDDS--------------RREVDELVQEYCAATRPDYL 460
+F + L+DS E VQ+Y T +L
Sbjct: 302 VLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTN-SHL 360
Query: 461 YPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTV---LDVMRRLLQPK 517
P+ + I+ L+ + + +++G P + ++RK LD Q +
Sbjct: 361 -PA---GKQVE-IS-LVNGAK-NLVVSGP-PQSLYGLNLTLRKAKAPSGLD------QSR 406
Query: 518 NMMVASIRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHC-YM-SILNIIQGEVDPCQV--- 572
+ S RK L R L P V +P H + ++I ++ V
Sbjct: 407 --IPFSERK---LKFSNRFL-P----V-ASP----FHSHLLVPASDLINKDLVKNNVSFN 451
Query: 573 HKSLQ----------RIRE------RKLVNFI---P--WSPAGIQVALSKKSPYVPTSH- 610
K +Q +R ++V+ I P W + + +H
Sbjct: 452 AKDIQIPVYDTFDGSDLRVLSGSISERIVDCIIRLPVKW----------ETTTQFKATHI 501
Query: 611 ------RVSGLMLANHTNISSLFDRCLTGK 634
SGL L R G
Sbjct: 502 LDFGPGGASGL--------GVLTHRNKDGT 523
Score = 42.0 bits (98), Expect = 7e-04
Identities = 52/335 (15%), Positives = 95/335 (28%), Gaps = 131/335 (39%)
Query: 32 HYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGG--------AGNNWASGYSQ 83
HY+ A LL P + + + + G ++W S +
Sbjct: 248 HYVVTAKLLGFTPGELRSYLKG------------ATGHSQGLVTAVAIAETDSWESFFVS 295
Query: 84 GKKLQEEIFDIIDREADGSDSLELY-----NPENVYLSKDGG-GAGNNWAS------GYS 131
+K +F I G E Y P + S + G S +
Sbjct: 296 VRKAITVLFFI------GVRCYEAYPNTSLPPSILEDSLENNEGV----PSPMLSISNLT 345
Query: 132 QGKKLQEEIFDIIDREADGSDSLE-----G---FVLCHSIAGGTGSGMGSYLLEHLADRF 183
Q +++Q+ + + + +E G V ++G S L L
Sbjct: 346 Q-EQVQDYV-NKTNSHLPAGKQVEISLVNGAKNLV----VSGPPQS------LYGLNLTL 393
Query: 184 -----PKKIIQT---YS----VFPNQ-DEISDVVVQPYNS-LLTLKRLTLNADCVVVLDN 229
P + Q+ +S F N+ ++ P++S LL
Sbjct: 394 RKAKAPSGLDQSRIPFSERKLKFSNRFLPVA----SPFHSHLLV---------------- 433
Query: 230 TALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYPSY----------MNNDLIGLI 279
A + I D LV ++ + ++ P Y ++ + I
Sbjct: 434 PASDLINKD--------------LVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSISERI 479
Query: 280 APLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLD 314
I + + T T A H +LD
Sbjct: 480 VDCIIRLPVKWETT--TQFKATH---------ILD 503
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid
segregation; HET: GDP; 1.90A {Bacillus cereus} PDB:
4ei8_A 4ei9_A*
Length = 389
Score = 56.3 bits (135), Expect = 2e-08
Identities = 35/219 (15%), Positives = 73/219 (33%), Gaps = 22/219 (10%)
Query: 71 GGAGNNWASGYSQGKKLQEEIFDIIDREA---DGSDSLELYNPENVYLSKD-----GGGA 122
G G A+ + + + + D ++ + K GA
Sbjct: 24 GMGGCAIAAECANKETQIKNNKYPYRAILVNTNSQDFNKIEIKNTGNVRKIQLEGYEQGA 83
Query: 123 GNNWASGYSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADR 182
N G K + +IF+ + +E + D + ++ C + GGTG+G +E L +
Sbjct: 84 ARNPQVGEEAFVKHETKIFEAVKQEFEDRDFI--WITC-GLGGGTGTGALLKAIEMLYEH 140
Query: 183 FPKKIIQTYSV--FPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRL 240
+ P E V+ + + ++ +V++DN L R +
Sbjct: 141 D----YNFGLLLTLPRDAEALKVLENATSRIRSIAMNQEAFGSIVLIDNAKLYRKFEEEN 196
Query: 241 HIE--NPSFAQINS-LVSTIMAVSTSTLRY--PSYMNND 274
N + N + + ++ T + S + D
Sbjct: 197 PSALANEYTSYSNKYIADALHEINLVTSSFTPFSDTHFD 235
Score = 28.9 bits (64), Expect = 6.2
Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 4/90 (4%)
Query: 18 GGAGNNWASGADDEHYIPRAVLLDLEPRVIHT----IMNSPYAKLYNPENVYLSKDGGGA 73
G G A+ ++ + +++T N + L GA
Sbjct: 24 GMGGCAIAAECANKETQIKNNKYPYRAILVNTNSQDFNKIEIKNTGNVRKIQLEGYEQGA 83
Query: 74 GNNWASGYSQGKKLQEEIFDIIDREADGSD 103
N G K + +IF+ + +E + D
Sbjct: 84 ARNPQVGEEAFVKHETKIFEAVKQEFEDRD 113
>3r4v_A Putative uncharacterized protein; tubulin, unknown function; HET:
GDP; 1.67A {Pseudomonas phage 201phi2-1} PDB: 3rb8_A*
Length = 315
Score = 52.6 bits (125), Expect = 2e-07
Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 18/176 (10%)
Query: 71 GGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGY 130
GG G N A+ FD D+ + ++++ NV L+K GAG N
Sbjct: 11 GGTGMNVATK-LVDLGEAVHCFDTCDK-----NVVDVHRSVNVTLTKGTRGAGGN----- 59
Query: 131 SQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQT 190
K + + I D + +++C+S+ GG+GS +G + LADR +
Sbjct: 60 --RKVILPLVRPQIPALMDTIPEADFYIVCYSLGGGSGSVLGPLITGQLADRKASFVSFV 117
Query: 191 YSVFPNQDEISDVV-----VQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH 241
+ D + + + ++ L + ++N +++
Sbjct: 118 VGAMESTDNLGNDIDTMKTLEAIAVNKHLPIVVNYVPNTQGRSYESINDEIAEKIR 173
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.7 bits (128), Expect = 2e-07
Identities = 79/497 (15%), Positives = 155/497 (31%), Gaps = 130/497 (26%)
Query: 208 YNSLLT--LKRLTLNADCVVVLDNT--ALNRIACDRLHIENPSFAQINSLVSTIMAVSTS 263
Y +L+ N DC V D L++ D + + + + L T+++
Sbjct: 18 YKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEE 77
Query: 264 TLRYPSYMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPK 323
++ L FLM+ P+ E S+ ++ RL
Sbjct: 78 M--VQKFVEEVL---------RINYKFLMS---PIKTEQRQPSMMTRMYIEQRDRL---Y 120
Query: 324 NMMVSTAPDRMS-QHCYMSILNIIQGEVDPCQ---VH------KS---LQRIRERKLVNF 370
N A +S Y+ + + E+ P + + K+ L K+
Sbjct: 121 NDNQVFAKYNVSRLQPYLKLRQALL-ELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 371 IP----W-------SPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSGISWQLPKREA 419
+ W SP + L K +++ + ++ SS I ++ +A
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQK------LLYQIDP-NWTSRSDHSSNIKLRIHSIQA 232
Query: 420 FLEQFRKEEMFLESLDELDD--SRREVDEL-VQEYC---AATRPDYLYPSYMNNDLIGLI 473
L + K + + L L + + + + + C TR + +
Sbjct: 233 ELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS--CKILLTTR---------FKQVTDFL 281
Query: 474 APLIPT-PRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQ--PK--NMMVASIR--- 525
+ T L TP + + D+ R +L P+ +++ SIR
Sbjct: 282 SAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGL 341
Query: 526 -------------KTTVLDVMRRLLQPKNMMVSTAPDRMSQHCY--MSI----------- 559
TT+++ +L+P + + +S+
Sbjct: 342 ATWDNWKHVNCDKLTTIIESSLNVLEPAEY----------RKMFDRLSVFPPSAHIPTIL 391
Query: 560 LNIIQGEVDPCQVHKSLQRIRERKLVN--------FIPWSPAGIQVALSKKSPYVPTSHR 611
L++I +V V + ++ + LV IP I + L K HR
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP----SIYLELKVKLENEYALHR 447
Query: 612 VSGLMLANHTNISSLFD 628
+ +H NI FD
Sbjct: 448 ----SIVDHYNIPKTFD 460
Score = 47.5 bits (112), Expect = 1e-05
Identities = 58/367 (15%), Positives = 104/367 (28%), Gaps = 117/367 (31%)
Query: 418 EAFLEQFRKEEMFLESLDELDD--SRREVDELVQEYCAATR------------------- 456
F + F + D S+ E+D ++ A +
Sbjct: 23 SVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKF 82
Query: 457 ------PDY--LYPSYMNNDLIGLIAPLIPTPRL---HFLMTGYTPLTAEHEVASIRKTT 505
+Y L P + T + + A++ V+ R
Sbjct: 83 VEEVLRINYKFLMSPIKTEQ----RQPSMMTRMYIEQRDRLYNDNQVFAKYNVS--RLQP 136
Query: 506 VLDVMRRL--LQP-KNMMV---ASIRKTT-VLDVMRRLLQPKNMMVSTAPDRM------S 552
L + + L L+P KN+++ KT LDV M ++ +
Sbjct: 137 YLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKM-----DFKIFWLNLKN 191
Query: 553 QHCYMSILNIIQG---EVDP--CQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVP 607
+ ++L ++Q ++DP I+ R I A ++ L K
Sbjct: 192 CNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-----IHSIQAELRRLLKSK----- 241
Query: 608 TSHRVSGLMLAN--HTNISSLFD-RC---LT-------------GKREAFLEQFRK---- 644
+ L+L N + + F+ C LT L+
Sbjct: 242 -PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP 300
Query: 645 ---EEMFLESLD-ELDDSRREVD-----------ELVQEYCAATRPDYLSW---GGAKSE 686
+ + L+ LD D REV E +++ D W K
Sbjct: 301 DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDG--LATWDN--WKHVNCDKLT 356
Query: 687 EIIDRIL 693
II+ L
Sbjct: 357 TIIESSL 363
Score = 44.5 bits (104), Expect = 1e-04
Identities = 61/452 (13%), Positives = 134/452 (29%), Gaps = 157/452 (34%)
Query: 336 QHCYMSILNIIQ----GEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPT 391
Q+ Y IL++ + D V + I ++ ++ I S +
Sbjct: 15 QYQYKDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVS-----------G 63
Query: 392 SHRVSGLMLANHTNISSG-ISWQLPKREAFL-EQFRKE--------EMFLESLDEL-DDS 440
+ R+ +L+ + + L FL + E M++E D L +D+
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDN 123
Query: 441 RREVDELVQEYCAATRPDYLYPSYMNNDLIGLIAPLIPTPRLHFL--MTGY--TPLTAE- 495
+ V +R L + L P + + + G T + +
Sbjct: 124 QVFAKYNV------SRLQ------PYLKLRQALLELRPAKNV-LIDGVLGSGKTWVALDV 170
Query: 496 ---HEV----------ASIRK----TTVLDVMRRLL---------QPKNMMVASIRKTTV 529
++V +++ TVL+++++LL + + +R ++
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI 230
Query: 530 LDVMRRLLQPKNMMVSTAPDRMSQHCYMSIL------NIIQGEVDP-CQVHKSLQRIRER 582
+RRLL+ + ++C + +L + C++ L R +
Sbjct: 231 QAELRRLLK----------SKPYENCLL-VLLNVQNAKAWNA-FNLSCKI---LLTTRFK 275
Query: 583 KLVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTGK-----REA 637
++ +F+ + + ++ H L + SL + L + RE
Sbjct: 276 QVTDFLS----------AATTTHISLDHHSMTL---TPDEVKSLLLKYLDCRPQDLPREV 322
Query: 638 ----------FLEQFRKE-------------------EMFLESLDELDDSRREVDELVQE 668
E R E L L+ E +
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEP--------AEYRKM 374
Query: 669 Y--CAATRPD------YLS--WGGAKSEEIID 690
+ + P LS W +++
Sbjct: 375 FDRLSVFPPSAHIPTILLSLIWFDVIKSDVMV 406
Score = 37.5 bits (86), Expect = 0.019
Identities = 79/511 (15%), Positives = 144/511 (28%), Gaps = 180/511 (35%)
Query: 1 MTIR--LYN--PENVYLSKDG-GGAGNNW--ASGADDE----------HYI-------PR 36
+ +R L P + DG G+G W ++ P
Sbjct: 138 LKLRQALLELRPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE 196
Query: 37 AVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKLQE------- 89
VL L+ ++++ I + ++ + N+ L + + K +
Sbjct: 197 TVLEMLQ-KLLYQIDPNWTSRSDHSSNIKLRIH---SIQAELRRLLKSKPYENCLLVLLN 252
Query: 90 -------EIFD------IIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKL 136
F+ + R +D L ++ L + K L
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP------DEVKSL 306
Query: 137 QEEIFDIID----READGSDSLEGFVLCHSIAGGTGSGMGS---YLLEHLADRFPKKIIQ 189
+ D RE L SI + + D+ II+
Sbjct: 307 LLKYLDCRPQDLPREV-----LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-TTIIE 360
Query: 190 T----------------YSVFPN-----------------QDEISDVVVQPYNSLLTLKR 216
+ SVFP + ++ VV + + L K+
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQ 420
Query: 217 -----LTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRYP--- 268
+++ + L N A LH S+V Y
Sbjct: 421 PKESTISIP-SIYLELKVKLENEYA---LH---------RSIVD----------HYNIPK 457
Query: 269 SYMNNDLIGLIAPLIPTPRL-----HFLMTGYTPLTAEH-EVASIRKTTVLDVMRRLLQP 322
++ ++DL P L + G+ EH E ++ + LD R L+
Sbjct: 458 TFDSDDL--------IPPYLDQYFYSHI--GHHLKNIEHPERMTLFRMVFLDF--RFLEQ 505
Query: 323 KNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRI------RERK---LVNFIPW 373
K STA + SILN +Q Q+ I ER +++F+P
Sbjct: 506 KIRHDSTAWN-----ASGSILNTLQ------QLKFYKPYICDNDPKYERLVNAILDFLPK 554
Query: 374 -------SPAG--IQVALS-KKSPYVPTSHR 394
S +++AL + +H+
Sbjct: 555 IEENLICSKYTDLLRIALMAEDEAIFEEAHK 585
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding,
nucleotide-BIND structural protein; HET: GSP; 2.00A
{Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Length = 427
Score = 47.6 bits (112), Expect = 9e-06
Identities = 39/263 (14%), Positives = 84/263 (31%), Gaps = 27/263 (10%)
Query: 42 LEPRVIHTIMNSPYAKLYNPENVYLSKDG--------GGAGNNWA-SGYSQGKKLQEEIF 92
L PR H ++NS + + N ++ G GN A +
Sbjct: 14 LVPRGSHMLLNSNELEHIHSTNHSVNDISIRWGVIGAGQKGNKEADLFAGYKFSNGTTCY 73
Query: 93 DIIDREADGSD--SLELYNPENVYLSKDGGGAGNNWASGY----SQGKKLQEEIFDIIDR 146
+ SD L+ E+ GA + + D + +
Sbjct: 74 PTLAVNFAESDMMHLQNIIKEDRIHFDGLKGAARTPSVVTDLFDPETNPNANGYLDKLAQ 133
Query: 147 E-------ADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDE 199
E +G ++ F++C GG G+G GS +L+ + ++F + P+ D
Sbjct: 134 ELGRKFTNEEGEVIVDQFLICLGAGGGVGTGWGSLVLQLIREQFFPCPVSMLISLPSGDP 193
Query: 200 ISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 259
N+L+ L + L + + + + +N +I
Sbjct: 194 DEI-----NNALVLLSEIDEFMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKGTKD 248
Query: 260 VSTSTLRYPSYMNNDLIGLIAPL 282
+ + + N++++ + +
Sbjct: 249 LKNRYVNWKEVANDNVVSTLHEI 271
>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein
STR initiative, northeast structural genomics
consortium, NESG; 3.10A {Staphylococcus haemolyticus}
Length = 320
Score = 38.4 bits (90), Expect = 0.006
Identities = 28/118 (23%), Positives = 42/118 (35%), Gaps = 36/118 (30%)
Query: 168 GSGMGSYLLEHLADRFPKKII-------QTYSVFPNQDEISDVVVQPYNSLLTLKRLTLN 220
GS +G L +L +FP+K I + S + DEI D V +
Sbjct: 32 GSQLG--LKLYLERKFPEKNIYATGEAEPSLSFIGDLDEIDDSV--------------YS 75
Query: 221 ADCVVVLDNTALNRIACDRL-----------HIENPSFAQINSLVSTIMAVSTSTLRY 267
V+V D RI R H + +N V+T + STS + +
Sbjct: 76 DALVIVCDTANAPRIDDQRYLNGQSLIKIDHHPATDQYGDVN-FVNTEAS-STSEIIF 131
>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2,
protein structure initiative, northeast structural
genomics consortium, NESG; 2.25A {Bacteroides fragilis}
Length = 343
Score = 34.2 bits (79), Expect = 0.14
Identities = 23/119 (19%), Positives = 36/119 (30%), Gaps = 29/119 (24%)
Query: 168 GSGMGSYLLEHLADRFPKKII-------QTYSVFPNQDEISDVVVQPYNSLLTLKRLTLN 220
GS +G L L + + P +I + +L +
Sbjct: 38 GSSLG--LYHFLDSQDKIVNVIVPNAFPDFLKWMPGSKDILLYDRYQEFA----DKLIME 91
Query: 221 ADCVVVLDNTALNRIACDRL--------------HIENPSFAQINSLVSTIMAVSTSTL 265
AD + LD AL RI H+ F +I + ++ STS L
Sbjct: 92 ADVICCLDFNALKRIDEMSDIVAASPGRKIMIDHHLYPEDFCRIT-ISHPEIS-STSEL 148
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.5 bits (70), Expect = 0.47
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 14/28 (50%)
Query: 85 KKLQEEIFDIIDREADGSDSLELYNPEN 112
KKLQ SL+LY ++
Sbjct: 23 KKLQ--------------ASLKLYADDS 36
>3a0f_A Xyloglucanase; beta-propeller, hydrolase; 2.50A {Geotrichum SP}
Length = 763
Score = 32.0 bits (72), Expect = 0.77
Identities = 18/147 (12%), Positives = 40/147 (27%), Gaps = 26/147 (17%)
Query: 10 NVYLSKDGGGAGNNW-----ASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENV 64
+ + G ++W + + + + + + + +
Sbjct: 520 QGAYTTNSG---DSWTLFQTCVPSLEVGNGGTIAVGADGKTFVWSPSKA------DGKGP 570
Query: 65 YLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELY--NPENVYLSKDGGGA 122
Y S D G W + L ++ I AD + Y + ++S DGG +
Sbjct: 571 YTSSDYG---KTW----TAPSGLSKQTTGIA---ADRVQANTFYVYVEGDFFVSTDGGKS 620
Query: 123 GNNWASGYSQGKKLQEEIFDIIDREAD 149
+G R +
Sbjct: 621 YTKKGNGLPCCWTYTGTPVTSNLRAGE 647
>2f3o_A PFLD, PFL2, pyruvate formate-lyase 2; glycerol dehydratase, glycyl
R hyperthermophilic, unknown function; HET: PGE; 2.90A
{Archaeoglobus fulgidus}
Length = 776
Score = 31.1 bits (70), Expect = 1.7
Identities = 6/51 (11%), Positives = 14/51 (27%), Gaps = 9/51 (17%)
Query: 429 MFLESLDELDD---------SRREVDELVQEYCAATRPDYLYPSYMNNDLI 470
+ LE D L ++ + ++ A + +D
Sbjct: 354 LMLEVTDRLRLRQPNVHVRINKGSPESFLKRLAEAISSGCNNLALFFDDAA 404
>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic
vesicle, membrane, Ca structural protein; 7.94A {Bos
taurus}
Length = 190
Score = 30.1 bits (67), Expect = 1.8
Identities = 8/51 (15%), Positives = 22/51 (43%), Gaps = 7/51 (13%)
Query: 412 W------QLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCAATR 456
W +L + +A + ++E ++ +L++ + E V++ R
Sbjct: 90 WREEQRKRLQELDA-ASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 139
>2z5l_A Tylkr1, tylactone synthase starter module and modules 1 & 2;
short-chain dehydrogenase/reductase, rossman fold; 1.95A
{Streptomyces fradiae}
Length = 511
Score = 30.2 bits (68), Expect = 2.3
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 1/31 (3%)
Query: 145 DREADGSDSLEGFVLCHSIAGGTGS-GMGSY 174
+ L+ FVL S+ G G+ G G+Y
Sbjct: 374 HQLTADIKGLDAFVLFSSVTGTWGNAGQGAY 404
>1sqj_A OXG-RCBH, oligoxyloglucan reducing-END-specific cellobiohydrolase;
beta-propeller; 2.20A {Geotrichum SP} SCOP: b.69.13.1
b.69.13.1 PDB: 2ebs_A*
Length = 789
Score = 30.5 bits (68), Expect = 2.6
Identities = 21/150 (14%), Positives = 36/150 (24%), Gaps = 39/150 (26%)
Query: 10 NVYLSKDGGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLS-- 67
+Y++ DGG +W A + +I P P +Y++
Sbjct: 193 GMYVTHDGG---VSWEPVAGQPSSWLNRTTGAFPDKKPASIAPQPMKVALTPNFLYVTYA 249
Query: 68 -------KDGGG------AGNNW--------ASGYSQGKKLQEEIFDIIDREADGSDSLE 106
G W S + D ++
Sbjct: 250 DYPGPWGVTFGEVWRQNRTSGAWDDITPRVGNSSPAPYNNQTFPAGGFCGLSVDATNPNR 309
Query: 107 LY----------NPENVYLSKDGGGAGNNW 126
L +++YLS D G W
Sbjct: 310 LVVITLDRDPGPALDSIYLSTDA---GATW 336
>2wnw_A Activated by transcription factor SSRB; hydrolase, salmonella
typhimurium, O-glycosyl hydrolase family 30; 2.00A
{Salmonella enterica subsp}
Length = 447
Score = 29.9 bits (66), Expect = 3.4
Identities = 15/98 (15%), Positives = 30/98 (30%), Gaps = 3/98 (3%)
Query: 77 WASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKL 136
+S + + L E R+ D S+ + + P + DG G +G +
Sbjct: 6 ISSDPYRQQFLVERAVSFSHRQRDCSELISV-LPRHALQQIDGFGGSFTEGAGV-VFNSM 63
Query: 137 QEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSY 174
E+ + + L +G+Y
Sbjct: 64 SEKTKAQFLSLYFSAQEH-NYTLARMPIQSCDFSLGNY 100
>2be4_A Hypothetical protein LOC449832; DR.36843, BC083168, calicium
binding, EF-hand superfamily, S genomics, protein
structure initiative, PSI; 2.10A {Danio rerio} PDB:
2q4u_A
Length = 272
Score = 29.3 bits (65), Expect = 4.4
Identities = 9/70 (12%), Positives = 23/70 (32%), Gaps = 5/70 (7%)
Query: 90 EIFDIIDREADGS-DSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREA 148
+I+ D + +G + EL + + + +++++ D
Sbjct: 15 QIWQHFDADDNGYIEGKEL----DDFFRHMLKKLQPKDKITDERVQQIKKSFMSAYDATF 70
Query: 149 DGSDSLEGFV 158
DG +E
Sbjct: 71 DGRLQIEELA 80
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics,
joint center FO structural genomics, JCSG, protein
structure initiative; 2.70A {Bacteroides fragilis}
Length = 517
Score = 29.3 bits (66), Expect = 4.7
Identities = 14/101 (13%), Positives = 28/101 (27%), Gaps = 6/101 (5%)
Query: 10 NVYLSKDGG-GAGNNWASGADDEHYIPRAVLLDLEPRVIHTIM--NSPYAKLYNPENVYL 66
+ + DG + A + EPR I+ S + V +
Sbjct: 282 DAFEMADGTPATQYSQAPADQVFDINTCGIYEGREPRFYANIVFHGSQIFFNADKGAVTV 341
Query: 67 SKDGGGAGNNWAS---GYSQGKKLQEEIFDIIDREADGSDS 104
+ + GY+ K + + ++ A D
Sbjct: 342 DRYLMDTPDKGDGSLTGYNVWKWIDYDNYNYPYAGAGSPDF 382
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix,
two-stranded antiparallel coiled CO structural genomics,
PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB:
1xsx_A
Length = 95
Score = 27.1 bits (60), Expect = 5.8
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 3/39 (7%)
Query: 630 CLTGKREAFLEQFRKEEMFLESLDELDDSRREVDELVQE 668
LT K E LE RK F E +D + +++ ++
Sbjct: 58 MLTKKGEELLEDIRK---FNEMRKNMDQLKEKINSVLSI 93
>1al3_A Cys regulon transcriptional activator CYSB; LYSR family, cysteine
biosynthesis, transcription regulation; 1.80A
{Klebsiella aerogenes} SCOP: c.94.1.1
Length = 324
Score = 28.3 bits (64), Expect = 8.0
Identities = 8/51 (15%), Positives = 16/51 (31%), Gaps = 16/51 (31%)
Query: 626 LFDRCLTGKR--------EAFLEQFRKEEMFLESLDELDDSRREVDELVQE 668
+F R +GK + + R+ L ++D + E
Sbjct: 48 IFAR--SGKHLTQVTPAGQEIIRIARE------VLSKVDAIKSVAGEHTWP 90
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.135 0.396
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 10,933,399
Number of extensions: 681346
Number of successful extensions: 1992
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1900
Number of HSP's successfully gapped: 47
Length of query: 695
Length of database: 6,701,793
Length adjustment: 100
Effective length of query: 595
Effective length of database: 3,909,693
Effective search space: 2326267335
Effective search space used: 2326267335
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.7 bits)