RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy3432
(695 letters)
>d1tubb1 c.32.1.1 (B:1-245) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 243
Score = 208 bits (530), Expect = 4e-63
Identities = 76/247 (30%), Positives = 128/247 (51%), Gaps = 51/247 (20%)
Query: 22 NNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGY 81
N + + A Y+PRA+L+DLEP + ++ + P+ +++ P+N + G AGNNWA G+
Sbjct: 48 NVYYNEAAGNKYVPRAILVDLEPGTMDSVRSGPFGQIFRPDNFVFGQSG--AGNNWAKGH 105
Query: 82 SQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 141
Y++G +L + +
Sbjct: 106 ------------------------------------------------YTEGAELVDSVL 117
Query: 142 DIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEIS 201
D++ +E++ D L+GF L HS+ GGTGSGMG+ L+ + + +P +I+ T+SV P+ ++S
Sbjct: 118 DVVRKESESCDCLQGFQLTHSLGGGTGSGMGTLLISKIREEYPDRIMNTFSVVPSP-KVS 176
Query: 202 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 261
D VV+PYN+ L++ +L N D +DN AL I L + P++ +N LVS M+
Sbjct: 177 DTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV 236
Query: 262 TSTLRYP 268
T+ LR+P
Sbjct: 237 TTCLRFP 243
>d1tuba1 c.32.1.1 (A:1-245) Tubulin alpha-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 245
Score = 201 bits (512), Expect = 1e-60
Identities = 69/246 (28%), Positives = 111/246 (45%), Gaps = 51/246 (20%)
Query: 22 NNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGY 81
N + S ++PRAV +DLEP VI + Y +L++PE + K+
Sbjct: 50 NTFFSETGAGKHVPRAVFVDLEPTVIDEVRTGTYRQLFHPEQLITGKEDAA--------- 100
Query: 82 SQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIF 141
N Y+ GK++ + +
Sbjct: 101 -----------------------------------------NNYARGHYTIGKEIIDLVL 119
Query: 142 DIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEIS 201
D I + AD L+GF + HS GGTGSG S L+E L+ + KK +S++P ++S
Sbjct: 120 DRIRKLADQCTGLQGFSVFHSFGGGTGSGFTSLLMERLSVDYGKKSKLEFSIYPA-PQVS 178
Query: 202 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 261
VV+PYNS+LT ++DC ++DN A+ I L IE P++ +N L+ I++
Sbjct: 179 TAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSI 238
Query: 262 TSTLRY 267
T++LR+
Sbjct: 239 TASLRF 244
>d2btoa1 c.32.1.1 (A:3-246) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 244
Score = 184 bits (467), Expect = 3e-54
Identities = 62/240 (25%), Positives = 112/240 (46%), Gaps = 52/240 (21%)
Query: 28 ADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNWASGYSQGKKL 87
+ Y+PRA+++DLEP VI + L+NP N+ +G G
Sbjct: 57 SSSGSYVPRAIMVDLEPSVIDNVKA-TSGSLFNPANLISRTEGAG--------------- 100
Query: 88 QEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDRE 147
GN G+++ E+ +D E
Sbjct: 101 -----------------------------------GNFAVGYLGAGREVLPEVMSRLDYE 125
Query: 148 ADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQTYSVFPNQDEISDVVVQP 207
D D++ G ++ H+I GGTGSG G+ L+E L +++ + + + +V P+ ++S VV +P
Sbjct: 126 IDKCDNVGGIIVLHAIGGGTGSGFGALLIESLKEKYGEIPVLSCAVLPSP-QVSSVVTEP 184
Query: 208 YNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLRY 267
YN++ L L +AD ++ DN AL +A + +IE+P+ +N L++ +A T+++R+
Sbjct: 185 YNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMRF 244
>d1tuba2 d.79.2.1 (A:246-440) Tubulin alpha-subunit {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 195
Score = 157 bits (398), Expect = 5e-45
Identities = 46/193 (23%), Positives = 86/193 (44%), Gaps = 18/193 (9%)
Query: 270 YMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVST 329
+N DL L+P PR HF + Y P+ + E A + +V ++ +P N MV
Sbjct: 2 ALNVDLTEFQTNLVPYPRGHFPLATYAPVIS-AEKAYHEQLSVAEITNACFEPANQMVKC 60
Query: 330 APDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYV 389
P YM+ + +G+V P V+ ++ I+ ++ + F+ W P G +V ++ + P V
Sbjct: 61 DPRH---GKYMACCLLYRGDVVPKDVNAAIATIKTKRTIQFVDWCPTGFKVGINYEPPTV 117
Query: 390 PTSHRV-----SGLMLANHTNIS------SGISWQLPKREAFLEQFRKEEMFLESLDELD 438
+ + ML+N T I+ + + AF+ + E M E
Sbjct: 118 VPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMYAKRAFVHWYVGEGME---EGEFS 174
Query: 439 DSRREVDELVQEY 451
++R ++ L ++Y
Sbjct: 175 EAREDMAALEKDY 187
Score = 154 bits (391), Expect = 4e-44
Identities = 46/216 (21%), Positives = 87/216 (40%), Gaps = 40/216 (18%)
Query: 464 YMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVAS 523
+N DL L+P PR HF + Y P+ + + A
Sbjct: 2 ALNVDLTEFQTNLVPYPRGHFPLATYAPVISAEK------------------------AY 37
Query: 524 IRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERK 583
+ +V ++ +P N MV P YM+ + +G+V P V+ ++ I+ ++
Sbjct: 38 HEQLSVAEITNACFEPANQMVKCDPRH---GKYMACCLLYRGDVVPKDVNAAIATIKTKR 94
Query: 584 LVNFIPWSPAGIQVALSKKSPYVPTSHRV-----SGLMLANHTNISSLFDRCL-----TG 633
+ F+ W P G +V ++ + P V + + ML+N T I+ + R
Sbjct: 95 TIQFVDWCPTGFKVGINYEPPTVVPGGDLAKVQRAVCMLSNTTAIAEAWARLDHKFDLMY 154
Query: 634 KREAFLEQFRKEEMFLESLDELDDSRREVDELVQEY 669
+ AF+ + E M E ++R ++ L ++Y
Sbjct: 155 AKRAFVHWYVGEGME---EGEFSEAREDMAALEKDY 187
>d1tubb2 d.79.2.1 (B:246-437) Tubulin beta-subunit {Pig (Sus scrofa)
[TaxId: 9823]}
Length = 184
Score = 141 bits (356), Expect = 2e-39
Identities = 46/188 (24%), Positives = 85/188 (45%), Gaps = 16/188 (8%)
Query: 270 YMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVST 329
+N DL L ++P PRLHF M G+ PLT+ R TV ++ +++ KNMM +
Sbjct: 2 QLNADLRKLAVNMVPFPRLHFFMPGFAPLTS-RGSQQYRALTVPELTQQMFDAKNMMAAC 60
Query: 330 APDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYV 389
P Y+++ + +G + +V + + ++ + F+ W P ++ A+
Sbjct: 61 DPR---HGRYLTVAAVFRGRMSMKEVDEQMLNVQNKNSSYFVEWIPNNVKTAVCD---IP 114
Query: 390 PTSHRVSGLMLANHTNISSGIS------WQLPKREAFLEQFRKEEMFLESLDELDDSRRE 443
P ++S + N T I + +R+AFL + E M E ++
Sbjct: 115 PRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAFLHWYTGEGMD---EMEFTEAESN 171
Query: 444 VDELVQEY 451
+++LV EY
Sbjct: 172 MNDLVSEY 179
Score = 137 bits (347), Expect = 4e-38
Identities = 49/211 (23%), Positives = 87/211 (41%), Gaps = 38/211 (18%)
Query: 464 YMNNDLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVAS 523
+N DL L ++P PRLHF M G+ PLT+
Sbjct: 2 QLNADLRKLAVNMVPFPRLHFFMPGFAPLTSRG------------------------SQQ 37
Query: 524 IRKTTVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEVDPCQVHKSLQRIRERK 583
R TV ++ +++ KNMM + P Y+++ + +G + +V + + ++ +
Sbjct: 38 YRALTVPELTQQMFDAKNMMAACDPR---HGRYLTVAAVFRGRMSMKEVDEQMLNVQNKN 94
Query: 584 LVNFIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTG-----KREAF 638
F+ W P ++ A+ P ++S + N T I LF R +R+AF
Sbjct: 95 SSYFVEWIPNNVKTAVCD---IPPRGLKMSATFIGNSTAIQELFKRISEQFTAMFRRKAF 151
Query: 639 LEQFRKEEMFLESLDELDDSRREVDELVQEY 669
L + E M E ++ +++LV EY
Sbjct: 152 LHWYTGEGMD---EMEFTEAESNMNDLVSEY 179
>d2btoa2 d.79.2.1 (A:253-432) Tubulin alpha-subunit {Prosthecobacter
dejongeii [TaxId: 48465]}
Length = 180
Score = 128 bits (322), Expect = 9e-35
Identities = 44/188 (23%), Positives = 85/188 (45%), Gaps = 19/188 (10%)
Query: 274 DLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVSTAPDR 333
L L+ L+P P LHFLM + PLT + + + + ++++ L ++ + +P
Sbjct: 3 SLRELLTNLVPQPSLHFLMCAFAPLTPP-DRSKFEELGIEEMIKSLFDNGSVFAACSPM- 60
Query: 334 MSQHCYMSILNIIQGEV-DPCQVHKSLQRIRERKLVNFIPWSPAGIQVALSKKSPYVPTS 392
+ ++S + +G + D +L +RE+ W P ++ ++
Sbjct: 61 --EGRFLSTAVLYRGIMEDKPLADAALAAMREKL--PLTYWIPTAFKIGYVEQPGIS--- 113
Query: 393 HRVSGLMLANHTNISSGIS------WQLPKREAFLEQFRKEEMFLESLDELDDSRREVDE 446
HR S ++LAN+T I+ + +L +R+AF + E M ++++ R E
Sbjct: 114 HRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANWYLNEGMS---EEQINVLRASAQE 170
Query: 447 LVQEYCAA 454
LVQ Y A
Sbjct: 171 LVQSYQVA 178
Score = 122 bits (308), Expect = 6e-33
Identities = 45/211 (21%), Positives = 84/211 (39%), Gaps = 41/211 (19%)
Query: 468 DLIGLIAPLIPTPRLHFLMTGYTPLTAEHEVASIRKTTVLDVMRRLLQPKNMMVASIRKT 527
L L+ L+P P LHFLM + PLT + +
Sbjct: 3 SLRELLTNLVPQPSLHFLMCAFAPLTPPDR------------------------SKFEEL 38
Query: 528 TVLDVMRRLLQPKNMMVSTAPDRMSQHCYMSILNIIQGEV-DPCQVHKSLQRIRERKLVN 586
+ ++++ L ++ + +P + ++S + +G + D +L +RE+
Sbjct: 39 GIEEMIKSLFDNGSVFAACSPM---EGRFLSTAVLYRGIMEDKPLADAALAAMREKL--P 93
Query: 587 FIPWSPAGIQVALSKKSPYVPTSHRVSGLMLANHTNISSLFDRCLTG-----KREAFLEQ 641
W P ++ ++ HR S ++LAN+T I+ + DR +R+AF
Sbjct: 94 LTYWIPTAFKIGYVEQPGIS---HRKSMVLLANNTEIARVLDRICHNFDKLWQRKAFANW 150
Query: 642 FRKEEMFLESLDELDDSRREVDELVQEYCAA 672
+ E M ++++ R ELVQ Y A
Sbjct: 151 YLNEGMS---EEQINVLRASAQELVQSYQVA 178
>d2vapa1 c.32.1.1 (A:23-231) Cell-division protein FtsZ {Archaeon
Methanococcus jannaschii [TaxId: 2190]}
Length = 209
Score = 41.5 bits (97), Expect = 1e-04
Identities = 32/168 (19%), Positives = 56/168 (33%), Gaps = 16/168 (9%)
Query: 71 GGAGNNWASG-YSQGKKLQEEIFDIIDREA-DGSDSLELYNPENVYLSKDGGGAGNNWAS 128
GGAGNN + +G + + + D + + + + G G
Sbjct: 24 GGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKI-- 81
Query: 129 GYSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKII 188
G++ +E + I SD + + GGTG+G + E + +
Sbjct: 82 ----GEEAAKESAEEIKAAIQDSD---MVFITCGLGGGTGTGSAPVVAEIS--KKIGALT 132
Query: 189 QTYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIA 236
P E + L LK+ + D +VV+ N L I
Sbjct: 133 VAVVTLPFVMEGKVRMKNAMEGLERLKQ---HTDTLVVIPNEKLFEIV 177
>d1ofua1 c.32.1.1 (A:11-208) Cell-division protein FtsZ {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 198
Score = 40.6 bits (95), Expect = 2e-04
Identities = 33/203 (16%), Positives = 70/203 (34%), Gaps = 15/203 (7%)
Query: 71 GGAGNNWASGYSQGKKLQEEIFDI-IDREADGSDSLELYNPENVYLSKDGGGAGNNWASG 129
GG G N + ++ E D +A L+ V G G +
Sbjct: 10 GGGGGNAVNHMAKNNVEGVEFICANTDAQA-----LKNIAARTVLQLGPGVTKGLGAGAN 64
Query: 130 YSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQ 189
G++ E + I +G+D + + GGTG+G + E + +
Sbjct: 65 PEVGRQAALEDRERISEVLEGADM---VFITTGMGGGTGTGAAPIIAEVAKEM--GILTV 119
Query: 190 TYSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQ 249
P E + + ++ L + D ++ + N L I + +FA+
Sbjct: 120 AVVTRPFPFEGRKRM---QIADEGIRALAESVDSLITIPNEKLLTILGKDASLLA-AFAK 175
Query: 250 INSLVSTIMAVSTSTLRYPSYMN 272
+ +++ + + ++ P +N
Sbjct: 176 ADDVLAGAVRGISDIIKRPGMIN 198
>d1w5fa1 c.32.1.1 (A:22-215) Cell-division protein FtsZ {Thermotoga
maritima [TaxId: 2336]}
Length = 194
Score = 36.1 bits (83), Expect = 0.006
Identities = 28/186 (15%), Positives = 63/186 (33%), Gaps = 13/186 (6%)
Query: 71 GGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGY 130
GGAGNN + + + F ++ + LE N + + G
Sbjct: 9 GGAGNNAINRMIE-IGIHGVEFVAVNTDLQ---VLEASNADVKIQIGENITRGLGAGGRP 64
Query: 131 SQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGSGMGSYLLEHLADRFPKKIIQT 190
G++ E + I + + GGTG+G + + +A +
Sbjct: 65 EIGEQAALESEEKIREVLQDTH---MVFITAGFGGGTGTGASPVIAK-IAKEMGILTVAI 120
Query: 191 YSVFPNQDEISDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQI 250
+ E + + + L L++ + D ++ + N L + I++ +F +
Sbjct: 121 VTTPFY-FEGPERLKKAIEGLKKLRK---HVDTLIKISNNKLMEELPRDVKIKD-AFLKA 175
Query: 251 NSLVST 256
+ +
Sbjct: 176 DETLHQ 181
>d1g9ka1 b.80.7.1 (A:245-463) Metalloprotease {Pseudomonas sp., tac
ii 18 [TaxId: 306]}
Length = 219
Score = 32.1 bits (72), Expect = 0.16
Identities = 26/101 (25%), Positives = 35/101 (34%), Gaps = 12/101 (11%)
Query: 69 DGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWAS 128
DGGG SG+SQ + GS S NV ++ G A
Sbjct: 38 DGGGNDTLDFSGFSQ---------NQKINLTAGSFSDVGGMTGNVSIA---QGVTIENAI 85
Query: 129 GYSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGS 169
G S L + + G+D + G + GGTGS
Sbjct: 86 GGSGNDLLIGNDAANVLKGGAGNDIIYGGGGADVLWGGTGS 126
>d1kona_ e.39.1.1 (A:) Hypothetical protein YebC {Escherichia coli
[TaxId: 562]}
Length = 244
Score = 31.1 bits (70), Expect = 0.36
Identities = 11/44 (25%), Positives = 20/44 (45%), Gaps = 3/44 (6%)
Query: 398 LMLANHTNISSGISWQLPKREAFL--EQFRKEEMFLESLDELDD 439
L A S+ +S +P +A + E K ++ L++ DD
Sbjct: 184 LEAAGLKADSAEVSM-IPSTKADMDAETAPKLMRLIDMLEDCDD 226
>d1pv1a_ c.69.1.34 (A:) Hypothetical esterase YJL068C {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 299
Score = 31.0 bits (69), Expect = 0.47
Identities = 22/153 (14%), Positives = 49/153 (32%), Gaps = 7/153 (4%)
Query: 64 VYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDGGGAG 123
V+ +N + + + F I+ + +PE + G G
Sbjct: 52 VFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVANDPEGSWDFGQGAGFY 111
Query: 124 NN-----WASGYSQGKKLQEEIFDIIDREADGSDSLEGFVLCH-SIAGGTGSGMGSYLLE 177
N +A Y + +E+ +D + + ++ L + +I G + G G+
Sbjct: 112 LNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGAICG- 170
Query: 178 HLADRFPKKIIQTYSVFPNQDEISDVVVQPYNS 210
+L K+ + P + + Q
Sbjct: 171 YLKGYSGKRYKSCSAFAPIVNPSNVPWGQKAFK 203
Score = 29.5 bits (65), Expect = 1.4
Identities = 20/120 (16%), Positives = 37/120 (30%), Gaps = 12/120 (10%)
Query: 11 VYLSKDGGGAGNNWASGADDEHYIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDG 70
V+ +N + A + + + P PE + G
Sbjct: 52 VFYLSGLTCTPDNASEKAFWQFQADKYGFAIVFPDTSPRGDEVAND----PEGSWDFGQG 107
Query: 71 GGAGNN-----WASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVY---LSKDGGGA 122
G N +A Y + +E+ +D + + ++L +NV S G GA
Sbjct: 108 AGFYLNATQEPYAQHYQMYDYIHKELPQTLDSHFNKNGDVKLDFLDNVAITGHSMGGYGA 167
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 29.7 bits (66), Expect = 1.3
Identities = 28/125 (22%), Positives = 45/125 (36%), Gaps = 19/125 (15%)
Query: 77 WASGYSQG----KKLQEEIFDIIDREAD-GSDSLELYNPENVYLSKD-----GGGAGNNW 126
W+S K E++DII +E++ LEL EN + S+ G N +
Sbjct: 1 WSSHEQMLAQPLKDSDAEVYDIIKKESNRQRVGLELIASEN-FASRAVLEALGSCLNNKY 59
Query: 127 ASGYS-----QGKKLQEEIFDI-IDR--EADGSDSLEGFVLCHSIAGGTGSGMGSYLLEH 178
+ GY G + +E+ + R +A G D V +G + L
Sbjct: 60 SLGYPGQRYYGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVE 119
Query: 179 LADRF 183
R
Sbjct: 120 PHGRI 124
>d1sata1 b.80.7.1 (A:247-471) Metalloprotease {Serratia marcescens
[TaxId: 615]}
Length = 225
Score = 28.6 bits (63), Expect = 2.1
Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 9/104 (8%)
Query: 69 DGGGAGNNWASGYSQGKKLQ--EEIFDIIDREADGSDSLEL-YNPENVYLSKDGGGAGNN 125
D GG SGY+ +++ E+ F + G+ S+ EN GG+GN+
Sbjct: 39 DAGGNDTFDFSGYTANQRINLNEKSFSDVG-GLKGNVSIAAGVTIENAI-----GGSGND 92
Query: 126 WASGYSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTGS 169
G + L+ + + G+D L G S
Sbjct: 93 VIVGNAANNVLKGGAGNDVLFGGGGADELWGGAGKDIFVFSAAS 136
>d1r7ja_ a.4.5.49 (A:) Sso10a (SSO10449) {Archaeon Sulfolobus
solfataricus [TaxId: 2287]}
Length = 90
Score = 26.9 bits (60), Expect = 2.2
Identities = 10/36 (27%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Query: 630 CLTGKREAFLEQFRKEEMFLESLDELDDSRREVDEL 665
LT K E LE RK +++D+L + +++ +
Sbjct: 56 MLTKKGEELLEDIRKFNEMRKNMDQL---KEKINSV 88
>d2gtsa1 a.25.5.1 (A:4-80) Hypothetical protein HP0062 {Helicobacter
pylori [TaxId: 210]}
Length = 77
Score = 26.6 bits (58), Expect = 3.0
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 10/43 (23%)
Query: 411 SWQLPKREAFLEQFRKEEMFLESLDELDDSRREVDELVQEYCA 453
SW+ +R+ F E LD L + E DE QE A
Sbjct: 38 SWRDARRDK----------FSEVLDNLKSTFNEFDEAAQEQIA 70
>d1fi5a_ a.39.1.5 (A:) Troponin C {Chicken (Gallus gallus), cardiac
isoform [TaxId: 9031]}
Length = 81
Score = 26.1 bits (57), Expect = 4.0
Identities = 15/70 (21%), Positives = 26/70 (37%), Gaps = 13/70 (18%)
Query: 89 EEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREA 148
++F + D+ ADG LE A+G + + EE+ D+
Sbjct: 18 SDLFRMFDKNADGYIDLEELKI-------------MLQATGETITEDDIEELMKDGDKNN 64
Query: 149 DGSDSLEGFV 158
DG + F+
Sbjct: 65 DGRIDYDEFL 74
>d1k7ia1 b.80.7.1 (A:259-479) Metalloprotease {Erwinia chrysanthemi
[TaxId: 556]}
Length = 221
Score = 27.4 bits (60), Expect = 5.6
Identities = 16/105 (15%), Positives = 29/105 (27%), Gaps = 9/105 (8%)
Query: 70 GGGAGNNWASGYSQGKKLQEEIFDIIDREADGSDSLELYNPENVYLSKDG------GGAG 123
++ + K L IF + D + Y+ +G G G
Sbjct: 16 NSNTDRDFYTATDSSKAL---IFSVWDAGGTDTFDFSGYSNNQRINLNEGSFSDVGGLKG 72
Query: 124 NNWASGYSQGKKLQEEIFDIIDREADGSDSLEGFVLCHSIAGGTG 168
N + + + I + L+G + GG G
Sbjct: 73 NVSIAHGVTIENAIGGSGNDILVGNSADNILQGGAGNDVLYGGAG 117
>d2opoa1 a.39.1.10 (A:6-86) Polcalcin Che a 3 {Pigweed (Chenopodium
album) [TaxId: 3559]}
Length = 81
Score = 25.7 bits (56), Expect = 6.2
Identities = 15/70 (21%), Positives = 20/70 (28%), Gaps = 14/70 (20%)
Query: 89 EEIFDIIDREADGSDSLELYNPENVYLSKDGGGAGNNWASGYSQGKKLQEEIFDIIDREA 148
E IF D DG +S G + S + ID +
Sbjct: 9 ERIFKRFDTNGDG------------KISSSELGDA--LKTLGSVTPDEVRRMMAEIDTDG 54
Query: 149 DGSDSLEGFV 158
DG S + F
Sbjct: 55 DGFISFDEFT 64
>d1sd4a_ a.4.5.39 (A:) Penicillinase repressor BlaI {Staphylococcus
aureus [TaxId: 1280]}
Length = 122
Score = 26.3 bits (58), Expect = 6.5
Identities = 9/65 (13%), Positives = 28/65 (43%), Gaps = 10/65 (15%)
Query: 494 AEHEVASI----RKTTVLDVMRRLLQPKNMMVASIRKTTVLDVMRRLLQPKNMMVSTAPD 549
AE +V +I + + +++ + + K + T+ ++ RL + K ++ +
Sbjct: 7 AEWDVMNIIWDKKSVSANEIVVEIQKYKE-----VSDKTIRTLITRLYK-KEIIKRYKSE 60
Query: 550 RMSQH 554
+ +
Sbjct: 61 NIYFY 65
>d1mw7a_ e.39.1.1 (A:) Hypothetical protein HP0162 {Helicobacter
pylori [TaxId: 210]}
Length = 220
Score = 26.6 bits (58), Expect = 8.1
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 397 GLMLANHTNISSGISWQLPKREAFL--EQFRKEEMFLESLDELDD 439
G + + + + L EQ E L+ +++ DD
Sbjct: 168 GFESLKLPILKASLQR-IATTPIELNDEQMELTEKLLDRIEDDDD 211
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 27.3 bits (60), Expect = 8.2
Identities = 18/72 (25%), Positives = 32/72 (44%), Gaps = 10/72 (13%)
Query: 85 KKLQEEIFDIIDREAD-GSDSLELYNPENVYLSKD-----GGGAGNNWASGYSQGKKLQE 138
+ ++F I++E +EL EN ++S+ G N +A GY G++
Sbjct: 5 PQQDPQVFAAIEQERKRQHAKIELIASEN-FVSRAVMEAQGSVLTNKYAEGYP-GRRYYG 62
Query: 139 --EIFDIIDREA 148
E DI++ A
Sbjct: 63 GCEYVDIVEELA 74
>d1sa3a_ c.52.1.23 (A:) Restriction endonuclease MspI {Moraxella sp.
[TaxId: 479]}
Length = 262
Score = 26.5 bits (58), Expect = 9.8
Identities = 18/58 (31%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 33 YIPRAVLLDLEPRVIHTIMNSPYAKLYNPENVYLSKDGGGAGNNW--ASGYSQGKKLQ 88
+ R ++D E + Y E K G G G NW ASG S+ KK+Q
Sbjct: 203 LLIRFQVIDREYVDVTIKNIDDYVSDRIAEGSKARKPGFGTGLNWTYASG-SKAKKMQ 259
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.396
Gapped
Lambda K H
0.267 0.0583 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,650,405
Number of extensions: 128090
Number of successful extensions: 496
Number of sequences better than 10.0: 1
Number of HSP's gapped: 459
Number of HSP's successfully gapped: 34
Length of query: 695
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 603
Effective length of database: 1,144,436
Effective search space: 690094908
Effective search space used: 690094908
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)