BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3434
(83 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1Z5V|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To
Gtpgammas
pdb|1Z5W|A Chain A, Crystal Structure Of Gamma-Tubulin Bound To Gtp
Length = 474
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 62/67 (92%)
Query: 17 LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 76
+ DVVVQPYNSLLTLKRLT NADC+VVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 77 VSTSTLR 83
ST+TLR
Sbjct: 238 ASTTTLR 244
>pdb|3CB2|A Chain A, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
pdb|3CB2|B Chain B, Crystal Structure Of Human Gamma-Tubulin Bound To Gdp
Length = 475
Score = 116 bits (291), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 62/67 (92%)
Query: 17 LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 76
+ DVVVQPYNSLLTLKRLT NADC+VVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 77 VSTSTLR 83
ST+TLR
Sbjct: 238 ASTTTLR 244
>pdb|2BTQ|B Chain B, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 426
Score = 59.3 bits (142), Expect = 5e-10, Method: Composition-based stats.
Identities = 28/68 (41%), Positives = 50/68 (73%), Gaps = 1/68 (1%)
Query: 16 ILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIM 75
++ D V+PYN++LTL+R+ NAD V+LDN AL RIA +L+ +P++ +N++++ I+
Sbjct: 175 LISDSAVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIV 233
Query: 76 AVSTSTLR 83
+ T++LR
Sbjct: 234 SSVTASLR 241
>pdb|4I4T|A Chain A, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|C Chain C, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I55|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IHJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 450
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 21 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTS 80
VV+PYNS+LT ++DC ++DN A+ I L IE P++ +N L+S I++ T+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 81 TLR 83
+LR
Sbjct: 241 SLR 243
>pdb|4DRX|A Chain A, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|C Chain C, Gtp-Tubulin In Complex With A Darpin
Length = 437
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 21 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTS 80
VV+PYNS+LT ++DC ++DN A+ I L IE P++ +N L+S I++ T+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 81 TLR 83
+LR
Sbjct: 241 SLR 243
>pdb|3RYC|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|A Chain A, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|C Chain C, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|A Chain A, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|C Chain C, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|A Chain A, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|C Chain C, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F61|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|4F61|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|4F61|E Chain E, Tubulin:stathmin-Like Domain Complex
pdb|4F61|G Chain G, Tubulin:stathmin-Like Domain Complex
pdb|4F6R|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|A Chain A, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|C Chain C, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|A Chain A, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|C Chain C, Tubulin-vinblastine: Stathmin-like Complex
pdb|4I50|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4IIJ|A Chain A, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|C Chain C, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
Length = 451
Score = 54.3 bits (129), Expect = 2e-08, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 21 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTS 80
VV+PYNS+LT ++DC ++DN A+ I L IE P++ +N L+S I++ T+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITA 240
Query: 81 TLR 83
+LR
Sbjct: 241 SLR 243
>pdb|4FFB|A Chain A, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 447
Score = 53.9 bits (128), Expect = 2e-08, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 41/63 (65%)
Query: 21 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTS 80
VV+PYN++LT +ADC ++DN A+ + L I PSFA +N+L++ +++ T+
Sbjct: 182 VVEPYNTVLTTHTTLEHADCTFMVDNEAIYDMCKRNLDIPRPSFANLNNLIAQVVSSVTA 241
Query: 81 TLR 83
+LR
Sbjct: 242 SLR 244
>pdb|3DU7|A Chain A, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|C Chain C, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|A Chain A, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|C Chain C, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
Length = 449
Score = 53.5 bits (127), Expect = 3e-08, Method: Composition-based stats.
Identities = 25/63 (39%), Positives = 40/63 (63%)
Query: 21 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTS 80
VV+PYNS+LT ++DC ++DN A+ I L IE P++ +N L+S I++ T+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLMSQIVSSITA 240
Query: 81 TLR 83
+LR
Sbjct: 241 SLR 243
>pdb|1Z2B|A Chain A, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|C Chain C, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 448
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 21 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTS 80
VV+PYNS+LT ++DC ++DN A+ I L IE P++ +N L+ I++ T+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 81 TLR 83
+LR
Sbjct: 241 SLR 243
>pdb|3HKB|A Chain A, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|C Chain C, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|A Chain A, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|C Chain C, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|A Chain A, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|C Chain C, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|A Chain A, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|C Chain C, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|A Chain A, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|C Chain C, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|A Chain A, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|C Chain C, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 451
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 21 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTS 80
VV+PYNS+LT ++DC ++DN A+ I L IE P++ +N L+ I++ T+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 81 TLR 83
+LR
Sbjct: 241 SLR 243
>pdb|2XRP|B Chain B, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|D Chain D, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|F Chain F, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|H Chain H, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|B Chain B, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|D Chain D, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|F Chain F, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|H Chain H, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|B Chain B, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|A Chain A, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|A Chain A, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 452
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 21 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTS 80
VV+PYNS+LT ++DC ++DN A+ I L IE P++ +N L+ I++ T+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 81 TLR 83
+LR
Sbjct: 241 SLR 243
>pdb|1FFX|A Chain A, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|C Chain C, Tubulin:stathmin-Like Domain Complex
pdb|1IA0|A Chain A, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|2HXF|A Chain A, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|A Chain A, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|A Chain A, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
Length = 451
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 21 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTS 80
VV+PYNS+LT ++DC ++DN A+ I L IE P++ +N L+ I++ T+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 81 TLR 83
+LR
Sbjct: 241 SLR 243
>pdb|1JFF|A Chain A, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|3EDL|A Chain A, Kinesin13-Microtubule Ring Complex
pdb|3DCO|A Chain A, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|A Chain A, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|A Chain A, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|B Chain B, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|D Chain D, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|F Chain F, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|H Chain H, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|3J1T|B Chain B, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|B Chain B, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 451
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 21 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTS 80
VV+PYNS+LT ++DC ++DN A+ I L IE P++ +N L+ I++ T+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 81 TLR 83
+LR
Sbjct: 241 SLR 243
>pdb|1SA0|A Chain A, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|C Chain C, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|A Chain A, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|C Chain C, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|3EDL|F Chain F, Kinesin13-Microtubule Ring Complex
Length = 451
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 21 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTS 80
VV+PYNS+LT ++DC ++DN A+ I L IE P++ +N L+ I++ T+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 81 TLR 83
+LR
Sbjct: 241 SLR 243
>pdb|1TUB|A Chain A, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|A Chain A, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
Length = 440
Score = 52.8 bits (125), Expect = 5e-08, Method: Composition-based stats.
Identities = 24/63 (38%), Positives = 39/63 (61%)
Query: 21 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTS 80
VV+PYNS+LT ++DC ++DN A+ I L IE P++ +N L+ I++ T+
Sbjct: 181 VVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLIGQIVSSITA 240
Query: 81 TLR 83
+LR
Sbjct: 241 SLR 243
>pdb|4FFB|B Chain B, A Tog:alphaBETA-Tubulin Complex Structure Reveals
Conformation-Based Mechanisms For A Microtubule
Polymerase
Length = 463
Score = 51.6 bits (122), Expect = 1e-07, Method: Composition-based stats.
Identities = 24/65 (36%), Positives = 41/65 (63%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D V+PYN+ L++ +L ++D +DN AL I L + PS+ +N+LVS++M+
Sbjct: 177 DTRVEPYNATLSVHQLVEHSDETFCIDNEALYDICQRTLKLNQPSYGDLNNLVSSVMSGV 236
Query: 79 TSTLR 83
T++LR
Sbjct: 237 TTSLR 241
>pdb|1TUB|B Chain B, Tubulin Alpha-Beta Dimer, Electron Diffraction
pdb|1TVK|B Chain B, The Binding Mode Of Epothilone A On A,B-Tubulin By
Electron Crystallography
pdb|3J1T|C Chain C, High Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
pdb|3J1U|C Chain C, Low Affinity Dynein Microtubule Binding Domain - Tubulin
Complex
Length = 427
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L N D +DN AL I L + P++ +N LVS M+
Sbjct: 177 DTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV 236
Query: 79 TSTLR 83
T+ LR
Sbjct: 237 TTCLR 241
>pdb|1FFX|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|1FFX|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|1JFF|B Chain B, Refined Structure Of Alpha-Beta Tubulin From Zinc-Induced
Sheets Stabilized With Taxol
pdb|1IA0|B Chain B, Kif1a Head-Microtubule Complex Structure In Atp-Form
pdb|1SA0|B Chain B, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA0|D Chain D, Tubulin-Colchicine: Stathmin-Like Domain Complex
pdb|1SA1|B Chain B, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|1SA1|D Chain D, Tubulin-Podophyllotoxin: Stathmin-Like Domain Complex
pdb|2HXF|B Chain B, Kif1a Head-Microtubule Complex Structure In Amppnp-Form
pdb|2HXH|B Chain B, Kif1a Head-Microtubule Complex Structure In Adp-Form
pdb|2P4N|B Chain B, Human Monomeric Kinesin (1bg2) And Bovine Tubulin (1jff)
Docked Into The 9-Angstrom Cryo-Em Map Of
Nucleotide-Free Kinesin Complexed To The Microtubule
pdb|3EDL|B Chain B, Kinesin13-Microtubule Ring Complex
pdb|3EDL|G Chain G, Kinesin13-Microtubule Ring Complex
pdb|3DCO|B Chain B, Drosophila Nod (3dc4) And Bovine Tubulin (1jff) Docked
Into The 11-Angstrom Cryo-Em Map Of Nucleotide-Free Nod
Complexed To The Microtubule
pdb|2WBE|B Chain B, Kinesin-5-Tubulin Complex With Amppnp
pdb|3IZ0|B Chain B, Human Ndc80 Bonsai Decorated Microtubule
pdb|4ABO|A Chain A, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|C Chain C, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|E Chain E, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
pdb|4ABO|G Chain G, Mal3 Ch Domain Homology Model And Mammalian Tubulin (2xrp)
Docked Into The 8.6-Angstrom Cryo-Em Map Of
Mal3-Gtpgammas-Microtubules
Length = 445
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L N D +DN AL I L + P++ +N LVS M+
Sbjct: 177 DTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV 236
Query: 79 TSTLR 83
T+ LR
Sbjct: 237 TTCLR 241
>pdb|2XRP|A Chain A, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|C Chain C, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|E Chain E, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|2XRP|G Chain G, Human Doublecortin N-Dc Repeat (1mjd) And Mammalian
Tubulin (1jff And 3hke) Docked Into The 8-Angstrom
Cryo-Em Map Of Doublecortin-Stabilised Microtubules
pdb|4ATU|A Chain A, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|C Chain C, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|E Chain E, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATU|G Chain G, Human Doublecortin N-Dc Repeat Plus Linker, And Tubulin
(2xrp) Docked Into An 8a Cryo-Em Map Of
Doublecortin-Stabilised Microtubules Reconstructed In
Absence Of Kinesin
pdb|4ATX|A Chain A, Rigor Kinesin Motor Domain With An Ordered Neck-Linker,
Docked On Tubulin Dimer, Modelled Into The 8a Cryo-Em
Map Of Doublecortin-Microtubules Decorated With Kinesin
pdb|4AQV|B Chain B, Model Of Human Kinesin-5 Motor Domain (3hqd) And Mammalian
Tubulin Heterodimer (1jff) Docked Into The 9.7-angstrom
Cryo-em Map Of Microtubule-bound Kinesin-5 Motor Domain
In The Ampppnp State.
pdb|4AQW|B Chain B, Model Of Human Kinesin-5 Motor Domain (1ii6, 3hqd) And
Mammalian Tubulin Heterodimer (1jff) Docked Into The
9.5- Angstrom Cryo-em Map Of Microtubule-bound Kinesin-5
Motor Domain In The Rigor State
Length = 445
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L N D +DN AL I L + P++ +N LVS M+
Sbjct: 177 DTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV 236
Query: 79 TSTLR 83
T+ LR
Sbjct: 237 TTCLR 241
>pdb|4I4T|B Chain B, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I4T|D Chain D, Crystal Structure Of Tubulin-rb3-ttl-zampanolide Complex
pdb|4I50|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I50|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-epothilone A
Complex
pdb|4I55|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4I55|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl Complex
pdb|4IIJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IIJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-apo Complex
pdb|4IHJ|B Chain B, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
pdb|4IHJ|D Chain D, Crystal Structure Of Tubulin-stathmin-ttl-adp Complex
Length = 445
Score = 51.2 bits (121), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L N D +DN AL I L + P++ +N LVS M+
Sbjct: 177 DTVVEPYNATLSVHQLVENTDETYCIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV 236
Query: 79 TSTLR 83
T+ LR
Sbjct: 237 TTCLR 241
>pdb|3DU7|B Chain B, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3DU7|D Chain D, Tubulin-Colchicine-Phomopsin A: Stathmin-Like Domain
Complex
pdb|3E22|B Chain B, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3E22|D Chain D, Tubulin-Colchicine-Soblidotin: Stathmin-Like Domain
Complex
pdb|3HKB|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKB|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|B Chain B, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKC|D Chain D, Tubulin-Abt751: Rb3 Stathmin-Like Domain Complex
pdb|3HKD|B Chain B, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKD|D Chain D, Tubulin-Tn16 : Rb3 Stathmin-Like Domain Complex
pdb|3HKE|B Chain B, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3HKE|D Chain D, Tubulin-T138067: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|B Chain B, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2G|D Chain D, Tubulin-Nsc 613863: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|B Chain B, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
pdb|3N2K|D Chain D, Tubulin-Nsc 613862: Rb3 Stathmin-Like Domain Complex
Length = 445
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L N D +DN AL I L + P++ +N LVS M+
Sbjct: 177 DTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV 236
Query: 79 TSTLR 83
T+ LR
Sbjct: 237 TTCLR 241
>pdb|4F61|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|4F61|D Chain D, Tubulin:stathmin-Like Domain Complex
pdb|4F61|F Chain F, Tubulin:stathmin-Like Domain Complex
pdb|4F61|H Chain H, Tubulin:stathmin-Like Domain Complex
Length = 445
Score = 50.8 bits (120), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L N D +DN AL I L + P++ +N LVS M+
Sbjct: 177 DTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV 236
Query: 79 TSTLR 83
T+ LR
Sbjct: 237 TTCLR 241
>pdb|1Z2B|B Chain B, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
pdb|1Z2B|D Chain D, Tubulin-Colchicine-Vinblastine: Stathmin-Like Domain
Complex
Length = 445
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L N D +DN AL I L + P++ +N LVS M+
Sbjct: 177 DTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV 236
Query: 79 TSTLR 83
T+ LR
Sbjct: 237 TTCLR 241
>pdb|4DRX|B Chain B, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|D Chain D, Gtp-Tubulin In Complex With A Darpin
Length = 431
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L N D +DN AL I L + P++ +N LVS M+
Sbjct: 177 DTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV 236
Query: 79 TSTLR 83
T+ LR
Sbjct: 237 TTCLR 241
>pdb|3RYC|B Chain B, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYC|D Chain D, Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|B Chain B, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYF|D Chain D, Gtp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|B Chain B, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYH|D Chain D, Gmpcpp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|B Chain B, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|3RYI|D Chain D, Gdp-Tubulin: Rb3 Stathmin-Like Domain Complex
pdb|4F6R|B Chain B, Tubulin:stathmin-Like Domain Complex
pdb|3UT5|B Chain B, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|3UT5|D Chain D, Tubulin-colchicine-ustiloxin: Stathmin-like Domain Complex
pdb|4EB6|B Chain B, Tubulin-vinblastine: Stathmin-like Complex
pdb|4EB6|D Chain D, Tubulin-vinblastine: Stathmin-like Complex
Length = 445
Score = 50.4 bits (119), Expect = 2e-07, Method: Composition-based stats.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L N D +DN AL I L + P++ +N LVS M+
Sbjct: 177 DTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGV 236
Query: 79 TSTLR 83
T+ LR
Sbjct: 237 TTCLR 241
>pdb|2BTO|A Chain A, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTO|B Chain B, Structure Of Btuba From Prosthecobacter Dejongeii
pdb|2BTQ|A Chain A, Structure Of Btubab Heterodimer From Prosthecobacter
Dejongeii
Length = 473
Score = 47.4 bits (111), Expect = 2e-06, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 40/64 (62%)
Query: 20 VVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVST 79
VV +PYN++ L L +AD ++ DN AL +A + +IE+P+ +N L++ +A T
Sbjct: 182 VVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGIT 241
Query: 80 STLR 83
+++R
Sbjct: 242 ASMR 245
>pdb|1I3D|A Chain A, Human Carbonmonoxy Hemoglobin Bart's (Gamma4)
pdb|1I3D|B Chain B, Human Carbonmonoxy Hemoglobin Bart's (Gamma4)
pdb|1I3E|A Chain A, Human Azido-Met Hemoglobin Bart's (Gamma4)
pdb|1I3E|B Chain B, Human Azido-Met Hemoglobin Bart's (Gamma4)
Length = 146
Score = 30.0 bits (66), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 5 YFDTLG--SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRL 57
+FD+ G S I+ + V+ + K LT D + LD+ L+ + CD+L
Sbjct: 41 FFDSFGNLSSASAIMGNPKVKAHGK----KVLTSLGDAIKHLDDLKGTFAQLSELHCDKL 96
Query: 58 HIENPSFAQINSLVSTIMAV 77
H++ +F + +++ T++A+
Sbjct: 97 HVDPENFKLLGNVLVTVLAI 116
>pdb|1FDH|G Chain G, Structure Of Human Foetal Deoxyhaemoglobin
pdb|1FDH|H Chain H, Structure Of Human Foetal Deoxyhaemoglobin
Length = 147
Score = 30.0 bits (66), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 41/80 (51%), Gaps = 11/80 (13%)
Query: 5 YFDTLG--SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRL 57
+FD+ G S I+ + V+ + K LT D + LD+ L+ + CD+L
Sbjct: 42 FFDSFGNLSSASAIMGNPKVKAHGK----KVLTSLGDAIKHLDDLKGTFAQLSELHCDKL 97
Query: 58 HIENPSFAQINSLVSTIMAV 77
H++ +F + +++ T++A+
Sbjct: 98 HVDPENFKLLGNVLVTVLAI 117
>pdb|1A9W|E Chain E, Human Embryonic Gower Ii Carbonmonoxy Hemoglobin
pdb|1A9W|F Chain F, Human Embryonic Gower Ii Carbonmonoxy Hemoglobin
Length = 146
Score = 28.9 bits (63), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 5 YFDTLG--SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRL 57
+FD+ G S IL + V+ + K LT D + +DN L+ + CD+L
Sbjct: 41 FFDSFGNLSSPSAILGNPKVKAHGK----KVLTSFGDAIKNMDNLKPAFAKLSELHCDKL 96
Query: 58 HIENPSFAQINSLVSTIMA 76
H++ +F + +++ I+A
Sbjct: 97 HVDPENFKLLGNVMVIILA 115
>pdb|1HBR|B Chain B, R-State Form Of Chicken Hemoglobin D
pdb|1HBR|D Chain D, R-State Form Of Chicken Hemoglobin D
Length = 146
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 5 YFDTLG--SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRL 57
+F + G S IL + +V+ + K LT D V LDN + L+ + CD+L
Sbjct: 41 FFASFGNLSSPTAILGNPMVRAHGK----KVLTSFGDAVKNLDNIKNTFSQLSELHCDKL 96
Query: 58 HIENPSFAQINSLVSTIMAVSTS 80
H++ +F + ++ ++A S
Sbjct: 97 HVDPENFRLLGDILIIVLAAHFS 119
>pdb|2QMB|B Chain B, Structure Determination Of Haemoglobin From
Turkey(meleagris Gallopavo) At 2.8 Angstrom Resolution
pdb|2QMB|D Chain D, Structure Determination Of Haemoglobin From
Turkey(meleagris Gallopavo) At 2.8 Angstrom Resolution
pdb|3K8B|B Chain B, Crystal Structure Of Turkey (Meleagiris
Gallopova)hemoglobin At 2.3 Angstrom
pdb|3K8B|D Chain D, Crystal Structure Of Turkey (Meleagiris
Gallopova)hemoglobin At 2.3 Angstrom
Length = 146
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 40/83 (48%), Gaps = 11/83 (13%)
Query: 5 YFDTLG--SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRL 57
+F + G S IL + +V+ + K LT D V LDN + L+ + CD+L
Sbjct: 41 FFASFGNLSSPTAILGNPMVRAHGK----KVLTSFGDAVKNLDNIKNTFSQLSELHCDKL 96
Query: 58 HIENPSFAQINSLVSTIMAVSTS 80
H++ +F + ++ ++A S
Sbjct: 97 HVDPENFRLLGDILIIVLAAHFS 119
>pdb|1A4F|B Chain B, Bar-Headed Goose Hemoglobin (Oxy Form)
pdb|1C40|B Chain B, Bar-Headed Goose Hemoglobin (Aquomet Form)
pdb|1HV4|B Chain B, Crystal Structure Analysis Of Bar-Head Goose Hemoglobin
(Deoxy Form)
pdb|1HV4|D Chain D, Crystal Structure Analysis Of Bar-Head Goose Hemoglobin
(Deoxy Form)
pdb|1HV4|F Chain F, Crystal Structure Analysis Of Bar-Head Goose Hemoglobin
(Deoxy Form)
pdb|1HV4|H Chain H, Crystal Structure Analysis Of Bar-Head Goose Hemoglobin
(Deoxy Form)
Length = 146
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 5 YFDTLG--SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRL 57
+F + G S IL + +V+ + K LT D V LDN L+ + CD+L
Sbjct: 41 FFSSFGNLSSPTAILGNPMVRAHGK----KVLTSFGDAVKNLDNIKNTFAQLSELHCDKL 96
Query: 58 HIENPSFAQINSLVSTIMAV 77
H++ +F + ++ ++A
Sbjct: 97 HVDPENFRLLGDILIIVLAA 116
>pdb|3MJP|B Chain B, Crystal Structure Determination Of Japanese Quail
(Coturnix Coturnix Japonica) Hemoglobin At 2.76 Angstrom
Resolution
pdb|3MJP|D Chain D, Crystal Structure Determination Of Japanese Quail
(Coturnix Coturnix Japonica) Hemoglobin At 2.76 Angstrom
Resolution
Length = 146
Score = 26.9 bits (58), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 39/80 (48%), Gaps = 11/80 (13%)
Query: 5 YFDTLG--SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRL 57
+F + G S IL + +V+ + K LT D V LDN + L+ + CD+L
Sbjct: 41 FFASFGNLSSPTAILGNPMVRAHGK----KVLTSFGDAVKNLDNIKNTFSQLSELHCDKL 96
Query: 58 HIENPSFAQINSLVSTIMAV 77
H++ +F + ++ ++A
Sbjct: 97 HVDPENFRLLGDILIIVLAA 116
>pdb|1FAW|B Chain B, Graylag Goose Hemoglobin (Oxy Form)
pdb|1FAW|D Chain D, Graylag Goose Hemoglobin (Oxy Form)
Length = 146
Score = 26.9 bits (58), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 5 YFDTLG--SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRL 57
+F + G S IL + +V+ + K LT D V LDN L+ + CD+L
Sbjct: 41 FFSSFGNLSSPTAILGNPMVRAHGK----KVLTSFGDAVKNLDNIKNTFAQLSELHCDKL 96
Query: 58 HIENPSFAQINSLVSTIMAV 77
H++ +F + ++ ++A
Sbjct: 97 HVDPENFRLLGDILIIVLAA 116
>pdb|2DHB|B Chain B, Three Dimensional Fourier Synthesis Of Horse
Deoxyhaemoglobin At 2.8 Angstroms Resolution
Length = 146
Score = 26.6 bits (57), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 19/79 (24%), Positives = 41/79 (51%), Gaps = 11/79 (13%)
Query: 5 YFDTLG--SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRL 57
+FD+ G S+ ++ + V+ + K L + V LDN AL+ + CD+L
Sbjct: 41 FFDSFGDLSNPGAVMGNPKVKAHGK----KVLHSFGEGVHHLDNLKGTFAALSELHCDKL 96
Query: 58 HIENPSFAQINSLVSTIMA 76
H++ +F + ++++ ++A
Sbjct: 97 HVDPENFRLLGNVLALVVA 115
>pdb|3FS4|B Chain B, Crystal Structure Determination Of Ostrich Hemoglobin At
2.2 Angstrom Resolution
pdb|3FS4|D Chain D, Crystal Structure Determination Of Ostrich Hemoglobin At
2.2 Angstrom Resolution
pdb|3A59|B Chain B, Structure Of Hemoglobin From Flightless Bird (Struthio
Camelus)
pdb|3A59|D Chain D, Structure Of Hemoglobin From Flightless Bird (Struthio
Camelus)
pdb|3A59|F Chain F, Structure Of Hemoglobin From Flightless Bird (Struthio
Camelus)
pdb|3A59|H Chain H, Structure Of Hemoglobin From Flightless Bird (Struthio
Camelus)
Length = 146
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 5 YFDTLG--SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRL 57
+F + G S IL + +V+ + K LT D V LDN L+ + CD+L
Sbjct: 41 FFASFGNLSSPTAILGNPMVRAHGK----KVLTSFGDAVKNLDNIKNTFAQLSELHCDKL 96
Query: 58 HIENPSFAQINSLVSTIMAV 77
H++ +F + ++ ++A
Sbjct: 97 HVDPENFRLLGDILIIVLAA 116
>pdb|3EOK|B Chain B, Crystal Structure Determination Of Duck (Anas
Platyrhynchos) Hemoglobin At 2.1 Angstrom Resolution
Length = 146
Score = 26.6 bits (57), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 11/80 (13%)
Query: 5 YFDTLG--SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRL 57
+F + G S IL + +V+ + K LT D V LDN L+ + CD+L
Sbjct: 41 FFASFGNLSSPTAILGNPMVRAHGK----KVLTSFGDAVKNLDNIKNTFAQLSELHCDKL 96
Query: 58 HIENPSFAQINSLVSTIMAV 77
H++ +F + ++ ++A
Sbjct: 97 HVDPENFRLLGDILIIVLAA 116
>pdb|2R80|B Chain B, Pigeon Hemoglobin (Oxy Form)
pdb|2R80|D Chain D, Pigeon Hemoglobin (Oxy Form)
pdb|3DHR|B Chain B, Crystal Structure Determination Of Methemoglobin From
Pigeon At 2 Angstrom Resolution (Columba Livia)
pdb|3DHR|D Chain D, Crystal Structure Determination Of Methemoglobin From
Pigeon At 2 Angstrom Resolution (Columba Livia)
pdb|3DHR|F Chain F, Crystal Structure Determination Of Methemoglobin From
Pigeon At 2 Angstrom Resolution (Columba Livia)
pdb|3DHR|H Chain H, Crystal Structure Determination Of Methemoglobin From
Pigeon At 2 Angstrom Resolution (Columba Livia)
pdb|3MJU|B Chain B, Crystal Structure Determination Of Pigeon (Columba Livia)
Haemoglobin At 3.5 Angstrom Resolution
Length = 146
Score = 26.2 bits (56), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 16/51 (31%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
Query: 32 KRLTLNADCVVVLDN-----TALNRIACDRLHIENPSFAQINSLVSTIMAV 77
K LT D V LDN L+ + CD+LH++ +F + ++ I+A
Sbjct: 66 KVLTSFGDAVKNLDNIKGTFAQLSELHCDKLHVDPENFRLLGDILVIILAA 116
>pdb|3QJC|B Chain B, Human Hemoglobin A Mutant Beta H63l Carbonmonoxy-Form
pdb|3QJE|B Chain B, Human Hemoglobin A Mutant Beta H63l Deoxy-Form
pdb|3QJE|D Chain D, Human Hemoglobin A Mutant Beta H63l Deoxy-Form
Length = 146
Score = 26.2 bits (56), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 37/77 (48%), Gaps = 7/77 (9%)
Query: 5 YFDTLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRLHI 59
+F++ G + V+ P L K L +D + LDN L+ + CD+LH+
Sbjct: 41 FFESFGD--LSTPDAVMGNPKVKALGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHV 98
Query: 60 ENPSFAQINSLVSTIMA 76
+ +F + +++ ++A
Sbjct: 99 DPENFRLLGNVLVCVLA 115
>pdb|1V75|B Chain B, Crystal Structure Of Hemoglobin D From The Aldabra Giant
Tortoise (Geochelone Gigantea) At 2.0 A Resolution
pdb|1WMU|B Chain B, Crystal Structure Of Hemoglobin D From The Aldabra Giant
Tortoise, Geochelone Gigantea, At 1.65 A Resolution
pdb|2Z6N|B Chain B, Crystal Structure Of Carbonmonoxy Hemoglobin D From The
Aldabra Giant Tortoise, Geochelone Gigantea
Length = 146
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 11/79 (13%)
Query: 5 YFDTLG--SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRL 57
+F + G S ILH+ V + K LT + V LDN L+ + C++L
Sbjct: 41 FFASFGNLSSANAILHNAKVLAHGQ----KVLTSFGEAVKNLDNIKKTFAQLSELHCEKL 96
Query: 58 HIENPSFAQINSLVSTIMA 76
H++ +F + +++ ++A
Sbjct: 97 HVDPENFKLLGNILIIVLA 115
>pdb|1JEB|B Chain B, Chimeric HumanMOUSE CARBONMONOXY HEMOGLOBIN (HUMAN ZETA2
Mouse Beta2)
pdb|1JEB|D Chain D, Chimeric HumanMOUSE CARBONMONOXY HEMOGLOBIN (HUMAN ZETA2
Mouse Beta2)
Length = 146
Score = 25.8 bits (55), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 5 YFDTLG--SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRL 57
YFD+ G S I+ + V+ + K +T D + LD+ +L+ + CD+L
Sbjct: 41 YFDSFGDLSSASAIMGNAKVKAHGK----KVITAFNDGLNHLDSLKGTFASLSELHCDKL 96
Query: 58 HIENPSFAQINSLVSTIMA 76
H++ +F + +++ ++
Sbjct: 97 HVDPENFRLLGNMIVIVLG 115
>pdb|3HRW|B Chain B, Crystal Structure Of Hemoglobin From Mouse (Mus
Musculus)at 2.8
pdb|3HRW|D Chain D, Crystal Structure Of Hemoglobin From Mouse (Mus
Musculus)at 2.8
Length = 146
Score = 25.8 bits (55), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 39/79 (49%), Gaps = 11/79 (13%)
Query: 5 YFDTLG--SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDN-----TALNRIACDRL 57
YFD+ G S I+ + V+ + K +T D + LD+ +L+ + CD+L
Sbjct: 41 YFDSFGDLSSASAIMGNAKVKAHGK----KVITAFNDGLNHLDSLKGTFASLSELHCDKL 96
Query: 58 HIENPSFAQINSLVSTIMA 76
H++ +F + +++ ++
Sbjct: 97 HVDPENFRLLGNMIVIVLG 115
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.135 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,968,105
Number of Sequences: 62578
Number of extensions: 57294
Number of successful extensions: 237
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 196
Number of HSP's gapped (non-prelim): 58
length of query: 83
length of database: 14,973,337
effective HSP length: 51
effective length of query: 32
effective length of database: 11,781,859
effective search space: 377019488
effective search space used: 377019488
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)