BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy3434
(83 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q8VCK3|TBG2_MOUSE Tubulin gamma-2 chain OS=Mus musculus GN=Tubg2 PE=1 SV=1
Length = 451
Score = 119 bits (299), Expect = 4e-27, Method: Composition-based stats.
Identities = 57/67 (85%), Positives = 62/67 (92%)
Query: 17 LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 76
+ DVVVQPYNSLLTLKRLT NADCVVVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 77 VSTSTLR 83
ST+TLR
Sbjct: 238 ASTTTLR 244
>sp|Q9NRH3|TBG2_HUMAN Tubulin gamma-2 chain OS=Homo sapiens GN=TUBG2 PE=1 SV=1
Length = 451
Score = 119 bits (297), Expect = 7e-27, Method: Composition-based stats.
Identities = 57/67 (85%), Positives = 62/67 (92%)
Query: 17 LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 76
+ DVVVQPYNSLLTLKRLT NADCVVVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 77 VSTSTLR 83
ST+TLR
Sbjct: 238 ASTTTLR 244
>sp|Q0VCD2|TBG1_BOVIN Tubulin gamma-1 chain OS=Bos taurus GN=TUBG1 PE=2 SV=1
Length = 451
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/67 (85%), Positives = 62/67 (92%)
Query: 17 LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 76
+ DVVVQPYNSLLTLKRLT NADCVVVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 77 VSTSTLR 83
ST+TLR
Sbjct: 238 ASTTTLR 244
>sp|Q9XFG3|TBG_PHYPA Tubulin gamma chain OS=Physcomitrella patens subsp. patens GN=TUBG1
PE=3 SV=1
Length = 475
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/65 (87%), Positives = 61/65 (93%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIA DRLHI NP+FAQ NSLVST+M+ S
Sbjct: 180 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSAS 239
Query: 79 TSTLR 83
T+TLR
Sbjct: 240 TTTLR 244
>sp|Q32KM1|TBG2_BOVIN Tubulin gamma-2 chain OS=Bos taurus GN=TUBG2 PE=2 SV=1
Length = 451
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/67 (85%), Positives = 62/67 (92%)
Query: 17 LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 76
+ DVVVQPYNSLLTLKRLT NADCVVVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 77 VSTSTLR 83
ST+TLR
Sbjct: 238 ASTTTLR 244
>sp|P23258|TBG1_HUMAN Tubulin gamma-1 chain OS=Homo sapiens GN=TUBG1 PE=1 SV=2
Length = 451
Score = 118 bits (295), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 57/67 (85%), Positives = 62/67 (92%)
Query: 17 LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 76
+ DVVVQPYNSLLTLKRLT NADCVVVLDNTALNRIA DRLHI+NPSF+QIN LVSTIM+
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 77 VSTSTLR 83
ST+TLR
Sbjct: 238 ASTTTLR 244
>sp|P23330|TBG1_XENLA Tubulin gamma-1 chain OS=Xenopus laevis GN=tubg1 PE=2 SV=1
Length = 451
Score = 115 bits (288), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 58/69 (84%), Positives = 63/69 (91%), Gaps = 1/69 (1%)
Query: 15 EILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTI 74
E+ H VVVQPYNSLLTLKRLT NADCVVVLDNTALNRIA DRLHI+NPSF+QIN LVSTI
Sbjct: 177 EMSH-VVVQPYNSLLTLKRLTQNADCVVVLDNTALNRIATDRLHIQNPSFSQINQLVSTI 235
Query: 75 MAVSTSTLR 83
M+ ST+TLR
Sbjct: 236 MSASTTTLR 244
>sp|P23257|TBG1_DROME Tubulin gamma-1 chain OS=Drosophila melanogaster GN=gammaTub23C
PE=2 SV=2
Length = 475
Score = 115 bits (288), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 56/65 (86%), Positives = 62/65 (95%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNS+LTLKRLT AD VVVLDNTALNRIACDRLHI+NPSF+QIN+LVSTIM+VS
Sbjct: 180 DVVVQPYNSMLTLKRLTTAADSVVVLDNTALNRIACDRLHIQNPSFSQINNLVSTIMSVS 239
Query: 79 TSTLR 83
T+TLR
Sbjct: 240 TTTLR 244
>sp|O49068|TBG2_ORYSJ Tubulin gamma-2 chain OS=Oryza sativa subsp. japonica GN=TUBG2 PE=2
SV=1
Length = 469
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIA +RLH+ NP+FAQ NSLVST+M+ S
Sbjct: 180 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLANPTFAQTNSLVSTVMSAS 239
Query: 79 TSTLR 83
T+TLR
Sbjct: 240 TTTLR 244
>sp|Q41807|TBG1_MAIZE Tubulin gamma-1 chain OS=Zea mays GN=TUBG1 PE=2 SV=1
Length = 469
Score = 115 bits (287), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIA +RLH+ NP+FAQ NSLVST+M+ S
Sbjct: 180 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSAS 239
Query: 79 TSTLR 83
T+TLR
Sbjct: 240 TTTLR 244
>sp|Q41808|TBG2_MAIZE Tubulin gamma-2 chain OS=Zea mays GN=TUBG2 PE=2 SV=1
Length = 469
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIA +RLH+ NP+FAQ NSLVST+M+ S
Sbjct: 180 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSAS 239
Query: 79 TSTLR 83
T+TLR
Sbjct: 240 TTTLR 244
>sp|Q41874|TBG3_MAIZE Tubulin gamma-3 chain (Fragment) OS=Zea mays GN=TUBG3 PE=2 SV=1
Length = 421
Score = 115 bits (287), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIA +RLH+ NP+FAQ NSLVST+M+ S
Sbjct: 132 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLSNPTFAQTNSLVSTVMSAS 191
Query: 79 TSTLR 83
T+TLR
Sbjct: 192 TTTLR 196
>sp|P38558|TBG2_ARATH Tubulin gamma-2 chain OS=Arabidopsis thaliana GN=TUBG2 PE=2 SV=1
Length = 474
Score = 114 bits (286), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 55/65 (84%), Positives = 61/65 (93%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIA +RLH+ NP+FAQ NSLVST+M+ S
Sbjct: 180 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVERLHLTNPTFAQTNSLVSTVMSAS 239
Query: 79 TSTLR 83
T+TLR
Sbjct: 240 TTTLR 244
>sp|P83888|TBG1_RAT Tubulin gamma-1 chain OS=Rattus norvegicus GN=Tubg1 PE=2 SV=1
Length = 451
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 61/67 (91%)
Query: 17 LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 76
+ DVVVQPYNSLLTLKRLT NADCVVVLDNTALN IA DRLHI+NPSF+QIN LVSTIM+
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 77 VSTSTLR 83
ST+TLR
Sbjct: 238 ASTTTLR 244
>sp|P83887|TBG1_MOUSE Tubulin gamma-1 chain OS=Mus musculus GN=Tubg1 PE=1 SV=1
Length = 451
Score = 114 bits (285), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 56/67 (83%), Positives = 61/67 (91%)
Query: 17 LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 76
+ DVVVQPYNSLLTLKRLT NADCVVVLDNTALN IA DRLHI+NPSF+QIN LVSTIM+
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTALNLIATDRLHIQNPSFSQINQLVSTIMS 237
Query: 77 VSTSTLR 83
ST+TLR
Sbjct: 238 ASTTTLR 244
>sp|P38557|TBG1_ARATH Tubulin gamma-1 chain OS=Arabidopsis thaliana GN=TUBG1 PE=3 SV=1
Length = 474
Score = 113 bits (282), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 54/65 (83%), Positives = 60/65 (92%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNSLLTLKRLTLNADCVVVLDNTAL RIA +RLH+ NP+FAQ NSLVST+M+ S
Sbjct: 180 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALGRIAVERLHLTNPTFAQTNSLVSTVMSAS 239
Query: 79 TSTLR 83
T+TLR
Sbjct: 240 TTTLR 244
>sp|Q9GKK5|TBG1_CANFA Tubulin gamma-1 chain OS=Canis familiaris GN=TUBG1 PE=2 SV=1
Length = 451
Score = 112 bits (281), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 55/67 (82%), Positives = 60/67 (89%)
Query: 17 LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 76
+ DVVVQPYNSLLTLKRLT NADCVVVLDNT LNRIA +RLHI+NPSF QIN LVSTIM+
Sbjct: 178 MSDVVVQPYNSLLTLKRLTQNADCVVVLDNTTLNRIATNRLHIQNPSFFQINQLVSTIMS 237
Query: 77 VSTSTLR 83
ST+TLR
Sbjct: 238 ASTTTLR 244
>sp|P34785|TBG_ANEPH Tubulin gamma chain OS=Anemia phyllitidis GN=TUBG PE=2 SV=1
Length = 472
Score = 112 bits (280), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 56/66 (84%), Positives = 61/66 (92%), Gaps = 1/66 (1%)
Query: 19 DVVVQPYNSLLTL-KRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAV 77
DVVVQPYNSLLTL KRLT+NADCVVVLDNTALNRIA DRLHI NP+FAQ NSLVST+M+
Sbjct: 180 DVVVQPYNSLLTLNKRLTINADCVVVLDNTALNRIAVDRLHIPNPTFAQTNSLVSTVMSA 239
Query: 78 STSTLR 83
ST+TLR
Sbjct: 240 STTTLR 245
>sp|Q9Y882|TBG_SCHJP Tubulin gamma chain OS=Schizosaccharomyces japonicus GN=tug1 PE=3
SV=1
Length = 446
Score = 103 bits (258), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 51/65 (78%), Positives = 56/65 (86%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNSLLTLKRLTLNAD VVVLDN AL IA DRLHI+NP+F Q N LVST+M+ S
Sbjct: 180 DVVVQPYNSLLTLKRLTLNADAVVVLDNAALAHIAADRLHIQNPTFHQQNQLVSTVMSAS 239
Query: 79 TSTLR 83
T+TLR
Sbjct: 240 TTTLR 244
>sp|P90548|TBG2_EUPOC Tubulin gamma-2 chain OS=Euplotes octocarinatus PE=3 SV=1
Length = 461
Score = 103 bits (257), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/71 (70%), Positives = 59/71 (83%)
Query: 13 IIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVS 72
+ I +DVVVQPYN LL++KRLTLNADCVVVLDN AL IA DRL I P+F+QINS+VS
Sbjct: 171 VFPIENDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVS 230
Query: 73 TIMAVSTSTLR 83
T+MA ST+TLR
Sbjct: 231 TVMAASTTTLR 241
>sp|P34786|TBG1_EUPOC Tubulin gamma-1 chain OS=Euplotes octocarinatus PE=2 SV=2
Length = 461
Score = 103 bits (257), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/71 (70%), Positives = 59/71 (83%)
Query: 13 IIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVS 72
+ I +DVVVQPYN LL++KRLTLNADCVVVLDN AL IA DRL I P+F+QINS+VS
Sbjct: 171 VFPIENDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVS 230
Query: 73 TIMAVSTSTLR 83
T+MA ST+TLR
Sbjct: 231 TVMAASTTTLR 241
>sp|P54402|TBG_EUPAE Tubulin gamma chain OS=Euplotes aediculatus PE=2 SV=1
Length = 461
Score = 103 bits (257), Expect = 3e-22, Method: Composition-based stats.
Identities = 50/71 (70%), Positives = 59/71 (83%)
Query: 13 IIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVS 72
+ I +DVVVQPYN LL++KRLTLNADCVVVLDN AL IA DRL I P+F+QINS+VS
Sbjct: 171 VFPIENDVVVQPYNCLLSIKRLTLNADCVVVLDNNALTSIAVDRLKILQPTFSQINSIVS 230
Query: 73 TIMAVSTSTLR 83
T+MA ST+TLR
Sbjct: 231 TVMAASTTTLR 241
>sp|P42271|TBG2_DROME Tubulin gamma-2 chain OS=Drosophila melanogaster GN=gammaTub37C
PE=2 SV=3
Length = 457
Score = 103 bits (256), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 51/67 (76%), Positives = 60/67 (89%)
Query: 17 LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMA 76
+ DVVVQPYNS+LTLKRLT AD VVVLDNTALNRIA +RLHI+ P+F QIN+LVSTIM+
Sbjct: 178 ISDVVVQPYNSILTLKRLTKCADSVVVLDNTALNRIATERLHIQTPTFTQINNLVSTIMS 237
Query: 77 VSTSTLR 83
+ST+TLR
Sbjct: 238 LSTTTLR 244
>sp|Q39582|TBG_CHLRE Tubulin gamma chain OS=Chlamydomonas reinhardtii GN=TUBG PE=3 SV=1
Length = 468
Score = 101 bits (252), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/65 (73%), Positives = 57/65 (87%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNSLLTLKRLTL+AD VVVLDNTAL++IA +RLH+ P QINSL++T+MA S
Sbjct: 180 DVVVQPYNSLLTLKRLTLHADAVVVLDNTALDKIAVERLHLHKPDVQQINSLIATVMAAS 239
Query: 79 TSTLR 83
T+TLR
Sbjct: 240 TTTLR 244
>sp|P54403|TBG1_EUPCR Tubulin gamma-1 chain OS=Euplotes crassus PE=2 SV=1
Length = 462
Score = 101 bits (251), Expect = 1e-21, Method: Composition-based stats.
Identities = 48/66 (72%), Positives = 56/66 (84%)
Query: 18 HDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAV 77
+DVVVQPYN LL++KRL LNADCVVVLDNTAL IA DRL + P+F QINS+VST+MA
Sbjct: 176 NDVVVQPYNCLLSMKRLILNADCVVVLDNTALTSIAVDRLKLLQPTFPQINSIVSTVMAA 235
Query: 78 STSTLR 83
ST+TLR
Sbjct: 236 STTTLR 241
>sp|P25295|TBG_SCHPO Tubulin gamma chain OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=tug1 PE=3 SV=1
Length = 446
Score = 100 bits (248), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 54/65 (83%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNSLL LKRLTLNAD VVVLDN AL IA DRLH +NP+F Q N LVST+M+ S
Sbjct: 180 DVVVQPYNSLLALKRLTLNADSVVVLDNAALAHIAADRLHTQNPTFHQQNQLVSTVMSAS 239
Query: 79 TSTLR 83
T+TLR
Sbjct: 240 TTTLR 244
>sp|P40633|TBG_COCHE Tubulin gamma chain (Fragment) OS=Cochliobolus heterostrophus
GN=TUB4 PE=3 SV=2
Length = 265
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 54/65 (83%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D+VVQPYNSLL+++RLT NAD VVVLDN AL RIA DRLH+ PSF Q N LVST+M+ S
Sbjct: 114 DIVVQPYNSLLSMRRLTQNADSVVVLDNGALTRIAADRLHVMTPSFEQTNQLVSTVMSAS 173
Query: 79 TSTLR 83
T+TLR
Sbjct: 174 TTTLR 178
>sp|P18695|TBG_EMENI Tubulin gamma chain OS=Emericella nidulans (strain FGSC A4 / ATCC
38163 / CBS 112.46 / NRRL 194 / M139) GN=mipA PE=2 SV=3
Length = 454
Score = 97.8 bits (242), Expect = 2e-20, Method: Composition-based stats.
Identities = 45/65 (69%), Positives = 53/65 (81%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVV PYNSLL ++RLT NAD VVVLDN AL+RI DRLH++ PSF Q N LVST+M+ S
Sbjct: 179 DVVVNPYNSLLAMRRLTQNADSVVVLDNAALSRIVADRLHVQEPSFQQTNRLVSTVMSAS 238
Query: 79 TSTLR 83
T+TLR
Sbjct: 239 TTTLR 243
>sp|P53377|TBG_NEUCR Tubulin gamma chain OS=Neurospora crassa (strain ATCC 24698 /
74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) GN=tub-4
PE=2 SV=1
Length = 461
Score = 96.7 bits (239), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 45/65 (69%), Positives = 53/65 (81%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVV PYNSLL ++RLT NAD VVVLDN AL+ IA DRLH++ PSF Q N LVST+M+ S
Sbjct: 180 DVVVHPYNSLLAMRRLTQNADSVVVLDNGALSHIAADRLHVQEPSFQQTNQLVSTVMSAS 239
Query: 79 TSTLR 83
T+TLR
Sbjct: 240 TTTLR 244
>sp|P54404|TBG2_EUPCR Tubulin gamma-2 chain OS=Euplotes crassus PE=2 SV=1
Length = 462
Score = 96.7 bits (239), Expect = 4e-20, Method: Composition-based stats.
Identities = 43/66 (65%), Positives = 57/66 (86%)
Query: 18 HDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAV 77
+D+VVQPYN +L++KRL LNADCVVVLDNTA+ IA DRL + +P+ +Q+NS+VST+MA
Sbjct: 176 NDIVVQPYNCILSMKRLVLNADCVVVLDNTAITSIAVDRLKLLHPTISQVNSIVSTVMAA 235
Query: 78 STSTLR 83
ST+TLR
Sbjct: 236 STTTLR 241
>sp|Q7Z9Z2|TBG_COPC7 Tubulin gamma chain OS=Coprinopsis cinerea (strain Okayama-7 / 130
/ ATCC MYA-4618 / FGSC 9003) GN=TUB4 PE=3 SV=1
Length = 453
Score = 94.7 bits (234), Expect = 1e-19, Method: Composition-based stats.
Identities = 46/65 (70%), Positives = 52/65 (80%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNSLL LKRL +AD VVVLDN AL RI+ DRLH++ PSF Q N LVST++A S
Sbjct: 179 DVVVQPYNSLLALKRLVNHADSVVVLDNGALARISADRLHVQTPSFDQTNQLVSTVIAAS 238
Query: 79 TSTLR 83
T TLR
Sbjct: 239 TQTLR 243
>sp|P32348|TBG_USTVI Tubulin gamma chain OS=Ustilago violacea GN=TUB4 PE=3 SV=1
Length = 469
Score = 94.0 bits (232), Expect = 3e-19, Method: Composition-based stats.
Identities = 44/65 (67%), Positives = 54/65 (83%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNSLL++KRLT +AD V+VLDN AL++I DRLH++ SFAQ N LVST+M+ S
Sbjct: 179 DVVVQPYNSLLSMKRLTNHADSVIVLDNAALSKICQDRLHVQVASFAQTNQLVSTVMSAS 238
Query: 79 TSTLR 83
T TLR
Sbjct: 239 TQTLR 243
>sp|P34787|TBG_PLAFO Tubulin gamma chain OS=Plasmodium falciparum (isolate NF54)
GN=G-TUB PE=2 SV=1
Length = 452
Score = 89.4 bits (220), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 41/65 (63%), Positives = 54/65 (83%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNS+LTLKRL L+ D VVV+DNT+LNRI +RL + NP+F Q N+++S +M+ S
Sbjct: 181 DVVVQPYNSILTLKRLILSTDSVVVIDNTSLNRIFVERLKLNNPTFQQTNTIISNVMSAS 240
Query: 79 TSTLR 83
T+TLR
Sbjct: 241 TTTLR 245
>sp|Q8SRD2|TBG_ENCCU Tubulin gamma chain OS=Encephalitozoon cuniculi (strain GB-M1)
GN=TUB4 PE=3 SV=1
Length = 434
Score = 86.7 bits (213), Expect = 4e-17, Method: Composition-based stats.
Identities = 40/65 (61%), Positives = 50/65 (76%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVVQPYNS+LTL RL N+DC+VV+DN++L R D L I P+F IN L+ST+MA S
Sbjct: 173 DVVVQPYNSVLTLHRLIENSDCIVVMDNSSLGRYTLDSLRIGTPTFDHINLLISTVMAAS 232
Query: 79 TSTLR 83
TST+R
Sbjct: 233 TSTIR 237
>sp|P54405|TBG_RETFI Tubulin gamma chain OS=Reticulomyxa filosa PE=2 SV=1
Length = 478
Score = 85.9 bits (211), Expect = 7e-17, Method: Composition-based stats.
Identities = 41/64 (64%), Positives = 53/64 (82%)
Query: 20 VVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVST 79
VVV PYNS+L LKRL LNAD VVV+DNT+L+RIA +RL ++ SF + NS++ST+MA ST
Sbjct: 180 VVVHPYNSVLALKRLILNADAVVVIDNTSLHRIADERLQLDFASFKETNSIISTVMAAST 239
Query: 80 STLR 83
+TLR
Sbjct: 240 TTLR 243
>sp|Q55AR3|TBG_DICDI Tubulin gamma chain OS=Dictyostelium discoideum GN=tubC PE=1 SV=1
Length = 462
Score = 80.9 bits (198), Expect = 2e-15, Method: Composition-based stats.
Identities = 41/64 (64%), Positives = 49/64 (76%)
Query: 20 VVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVST 79
VVVQ YNS+LTLKRL NAD VVLDN AL+RI + L I+ P+ Q NSLVST+M+ ST
Sbjct: 178 VVVQQYNSVLTLKRLIENADSTVVLDNNALHRIVGENLRIDQPTMDQTNSLVSTVMSAST 237
Query: 80 STLR 83
+TLR
Sbjct: 238 TTLR 241
>sp|P34475|TBG_CAEEL Tubulin gamma chain OS=Caenorhabditis elegans GN=tbg-1 PE=2 SV=1
Length = 444
Score = 72.4 bits (176), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 46/65 (70%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
DVVV PYN +L+++RL N D VVVLDN AL+R+A + + P+F INSLV+ IM+ S
Sbjct: 182 DVVVHPYNWVLSMQRLIENPDHVVVLDNAALHRLAAGKFKTDTPTFDHINSLVARIMSTS 241
Query: 79 TSTLR 83
T+ R
Sbjct: 242 TAPYR 246
>sp|Q42480|TBB1_CHOCR Tubulin beta-1 chain OS=Chondrus crispus GN=TUBB PE=2 SV=1
Length = 453
Score = 68.6 bits (166), Expect = 1e-11, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 45/65 (69%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN L++ +L NADCV +DN AL I + L IE PS+ ++NSL+S++M+
Sbjct: 179 DTVVEPYNCTLSIHQLIENADCVFAIDNEALYNICYNTLKIEQPSYDELNSLISSVMSGI 238
Query: 79 TSTLR 83
T +LR
Sbjct: 239 TCSLR 243
>sp|P12459|TBB1_SOYBN Tubulin beta-1 chain OS=Glycine max GN=TUBB1 PE=3 SV=1
Length = 445
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 41/65 (63%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L NAD +VLDN AL I L + NPSF +N L+ST M+
Sbjct: 177 DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISTTMSGV 236
Query: 79 TSTLR 83
T LR
Sbjct: 237 TCCLR 241
>sp|Q75A43|TBG_ASHGO Tubulin gamma chain OS=Ashbya gossypii (strain ATCC 10895 / CBS
109.51 / FGSC 9923 / NRRL Y-1056) GN=TUB4 PE=3 SV=1
Length = 470
Score = 61.2 bits (147), Expect = 2e-09, Method: Composition-based stats.
Identities = 35/94 (37%), Positives = 52/94 (55%), Gaps = 19/94 (20%)
Query: 9 LGSDIIEILHD-------------------VVVQPYNSLLTLKRLTLNADCVVVLDNTAL 49
LGS+++E L D VVVQPYN++LTL+RL N+D V+ DN AL
Sbjct: 151 LGSNLLEALSDRYHKKIVSTYSVFPSRESEVVVQPYNTILTLRRLIDNSDASVLFDNDAL 210
Query: 50 NRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83
+ L N S+ Q N L++++M+ T++LR
Sbjct: 211 LNLTARVLRDSNTSYQQTNQLIASVMSSVTNSLR 244
>sp|Q6VAF5|TBB7_GOSHI Tubulin beta-7 chain OS=Gossypium hirsutum PE=2 SV=1
Length = 444
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 41/65 (63%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L N D +VLDN AL I L + NPSF +N L+ST M+ +
Sbjct: 177 DTVVEPYNATLSVHQLVENGDECMVLDNEALYDICFRTLKLTNPSFGDLNRLISTTMSGA 236
Query: 79 TSTLR 83
T LR
Sbjct: 237 TCCLR 241
>sp|P29500|TBB1_PEA Tubulin beta-1 chain OS=Pisum sativum GN=TUBB1 PE=3 SV=1
Length = 450
Score = 60.8 bits (146), Expect = 2e-09, Method: Composition-based stats.
Identities = 31/65 (47%), Positives = 41/65 (63%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L NAD V+VLDN AL I L + NPSF +N L+S M+
Sbjct: 177 DTVVEPYNATLSVHQLVENADEVMVLDNEALYDICFRILKLSNPSFGDLNHLISATMSGV 236
Query: 79 TSTLR 83
T LR
Sbjct: 237 TCCLR 241
>sp|Q76FS2|TBB8_ORYSJ Tubulin beta-8 chain OS=Oryza sativa subsp. japonica GN=TUBB8 PE=2
SV=1
Length = 446
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L NAD +VLDN AL I L + NPSF +N L+S M+
Sbjct: 177 DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISATMSGV 236
Query: 79 TSTLR 83
T LR
Sbjct: 237 TCCLR 241
>sp|Q41782|TBB4_MAIZE Tubulin beta-4 chain OS=Zea mays GN=TUBB4 PE=2 SV=2
Length = 447
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L NAD +VLDN AL I L + NPSF +N L+S M+
Sbjct: 179 DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISATMSGV 238
Query: 79 TSTLR 83
T LR
Sbjct: 239 TCCLR 243
>sp|Q43695|TBB3_MAIZE Tubulin beta-3 chain OS=Zea mays GN=TUBB3 PE=2 SV=1
Length = 445
Score = 59.3 bits (142), Expect = 6e-09, Method: Composition-based stats.
Identities = 30/65 (46%), Positives = 40/65 (61%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L NAD +VLDN AL I L + NPSF +N L+S M+
Sbjct: 177 DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTNPSFGDLNHLISATMSGV 236
Query: 79 TSTLR 83
T LR
Sbjct: 237 TCCLR 241
>sp|P05219|TBB_SCHPO Tubulin beta chain OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=nda3 PE=1 SV=2
Length = 448
Score = 59.3 bits (142), Expect = 7e-09, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 43/65 (66%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L N+D +DN AL+ I + L I++PS+ +N LVS +MA
Sbjct: 177 DTVVEPYNATLSMHQLVENSDETFCIDNEALSSIFANTLKIKSPSYDDLNHLVSAVMAGV 236
Query: 79 TSTLR 83
T++ R
Sbjct: 237 TTSFR 241
>sp|P10875|TBB_CANAX Tubulin beta chain OS=Candida albicans GN=TUB2 PE=3 SV=1
Length = 449
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 26/65 (40%), Positives = 45/65 (69%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D V++PYN+ L++ +L N+D +DN AL I + L + PS+A++N+LVS++M+
Sbjct: 177 DTVIEPYNATLSVHQLVENSDETFCIDNEALYNICQNTLKLPQPSYAELNNLVSSVMSGV 236
Query: 79 TSTLR 83
T++LR
Sbjct: 237 TTSLR 241
>sp|Q6QDC9|TBB_MYCGR Tubulin beta chain OS=Mycosphaerella graminicola GN=TUB1 PE=3 SV=1
Length = 447
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L N+D +DN AL I L + NPS+ +N LVS +M+
Sbjct: 177 DTVVEPYNATLSVHQLVENSDATFCIDNEALYDICMRTLKLNNPSYGDLNHLVSAVMSGV 236
Query: 79 TSTLR 83
T+ LR
Sbjct: 237 TTCLR 241
>sp|Q3KVN1|TBB_CERBT Tubulin beta chain OS=Cercospora beticola GN=TUB1 PE=3 SV=1
Length = 447
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/65 (41%), Positives = 40/65 (61%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L N+D +DN AL I L + NPS+ +N LVS +M+
Sbjct: 177 DTVVEPYNATLSVHQLVENSDATFCIDNEALYDICMRTLKLNNPSYGDLNHLVSAVMSGV 236
Query: 79 TSTLR 83
T+ LR
Sbjct: 237 TTCLR 241
>sp|P29517|TBB9_ARATH Tubulin beta-9 chain OS=Arabidopsis thaliana GN=TUBB9 PE=2 SV=1
Length = 444
Score = 58.5 bits (140), Expect = 1e-08, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 40/65 (61%)
Query: 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVS 78
D VV+PYN+ L++ +L NAD +VLDN AL I L + NP+F +N L+S M+
Sbjct: 177 DTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLANPTFGDLNHLISATMSGV 236
Query: 79 TSTLR 83
T LR
Sbjct: 237 TCCLR 241
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.135 0.373
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,253,371
Number of Sequences: 539616
Number of extensions: 771614
Number of successful extensions: 2759
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 428
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 2251
Number of HSP's gapped (non-prelim): 542
length of query: 83
length of database: 191,569,459
effective HSP length: 54
effective length of query: 29
effective length of database: 162,430,195
effective search space: 4710475655
effective search space used: 4710475655
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)