Query psy3434
Match_columns 83
No_of_seqs 104 out of 681
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 16:37:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3434.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/3434hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5023 Tubulin [Cytoskeleton] 99.9 3.4E-27 7.5E-32 174.1 6.0 75 9-83 167-241 (443)
2 PLN00221 tubulin alpha chain; 99.8 2.8E-21 6.1E-26 145.8 5.1 76 8-83 168-243 (450)
3 PLN00222 tubulin gamma chain; 99.8 4.7E-21 1E-25 144.7 5.0 75 9-83 169-244 (454)
4 PTZ00010 tubulin beta chain; P 99.8 5E-21 1.1E-25 144.1 5.0 75 9-83 167-241 (445)
5 KOG1374|consensus 99.8 1.7E-20 3.7E-25 138.9 5.9 69 15-83 176-244 (448)
6 cd02187 beta_tubulin The tubul 99.8 7.4E-20 1.6E-24 137.1 4.7 75 9-83 166-240 (425)
7 cd02188 gamma_tubulin Gamma-tu 99.8 8.1E-20 1.7E-24 137.3 4.9 75 9-83 167-242 (431)
8 KOG1376|consensus 99.8 3.7E-20 8E-25 136.4 2.4 74 10-83 169-242 (407)
9 PTZ00335 tubulin alpha chain; 99.8 1.6E-19 3.5E-24 136.2 5.6 76 8-83 168-243 (448)
10 cd02186 alpha_tubulin The tubu 99.8 5.1E-19 1.1E-23 132.9 5.9 76 8-83 167-242 (434)
11 PLN00220 tubulin beta chain; P 99.8 2.9E-19 6.4E-24 134.6 4.3 76 8-83 166-241 (447)
12 cd02189 delta_tubulin The tubu 99.7 2.9E-18 6.4E-23 129.2 5.7 75 8-83 162-236 (446)
13 PTZ00387 epsilon tubulin; Prov 99.7 3.5E-17 7.7E-22 124.1 5.3 67 17-83 175-268 (465)
14 cd06059 Tubulin The tubulin su 99.6 9.7E-16 2.1E-20 113.2 5.6 76 8-83 125-200 (382)
15 cd00286 Tubulin_FtsZ Tubulin/F 99.5 4.9E-15 1.1E-19 107.2 4.7 64 20-83 136-199 (328)
16 smart00864 Tubulin Tubulin/Fts 99.5 2.5E-15 5.5E-20 102.0 2.9 74 9-83 116-189 (192)
17 cd02190 epsilon_tubulin The tu 99.5 4.4E-14 9.6E-19 104.8 4.0 62 9-83 136-197 (379)
18 cd02191 FtsZ FtsZ is a GTPase 99.3 3.1E-12 6.7E-17 92.7 3.5 78 4-83 113-190 (303)
19 KOG1375|consensus 99.2 5.7E-12 1.2E-16 93.1 3.0 55 8-63 111-165 (369)
20 cd02201 FtsZ_type1 FtsZ is a G 99.1 2.4E-11 5.1E-16 87.8 2.5 76 7-83 116-191 (304)
21 TIGR00065 ftsZ cell division p 99.1 2.9E-11 6.3E-16 89.2 2.7 74 8-83 134-207 (349)
22 PF00091 Tubulin: Tubulin/FtsZ 99.1 4.8E-11 1.1E-15 82.2 1.2 56 11-66 161-216 (216)
23 cd02202 FtsZ_type2 FtsZ is a G 99.0 2.1E-10 4.6E-15 84.5 2.7 72 8-83 131-202 (349)
24 PRK13018 cell division protein 98.9 1.4E-09 3E-14 81.2 3.5 67 15-83 143-218 (378)
25 PRK09330 cell division protein 98.4 1.4E-07 3E-12 70.7 1.7 75 7-82 129-203 (384)
26 cd06060 misato Human Misato sh 96.8 0.00078 1.7E-08 52.1 2.4 62 19-83 201-271 (493)
27 COG0206 FtsZ Cell division GTP 73.0 2.2 4.8E-05 31.9 1.6 70 8-79 128-197 (338)
28 PF14881 Tubulin_3: Tubulin do 69.9 6.9 0.00015 26.5 3.3 49 24-83 131-179 (180)
29 PHA02540 61 DNA primase; Provi 68.6 2.6 5.6E-05 31.5 1.0 40 4-50 230-269 (337)
30 PF03244 PSI_PsaH: Photosystem 64.0 2.6 5.6E-05 27.7 0.3 27 2-28 50-80 (140)
31 PLN00017 photosystem I reactio 52.9 5.7 0.00012 24.3 0.4 25 2-28 11-41 (90)
32 PF12622 NpwBP: mRNA biogenesi 36.4 14 0.00031 20.0 0.4 13 2-14 3-15 (48)
33 PF07126 DUF1379: Protein of u 34.0 25 0.00053 23.5 1.2 22 1-22 73-94 (153)
No 1
>COG5023 Tubulin [Cytoskeleton]
Probab=99.94 E-value=3.4e-27 Score=174.05 Aligned_cols=75 Identities=47% Similarity=0.705 Sum_probs=72.2
Q ss_pred cccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 9 LGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 9 ~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
--+.+.|++|++||||||++|++|.|+|++||+|++||+||++||.+.|++++|+|+++|+|||++||++|+++|
T Consensus 167 fSV~P~p~~Sd~VVePYNsvLt~h~l~ensD~tf~~DNeal~di~~~~L~i~~P~y~~lN~LIs~VmSsvTtslR 241 (443)
T COG5023 167 FSVFPAPKVSDVVVEPYNSVLTLHRLLENSDCTFVVDNEALYDICRRNLRIQNPSYDDLNQLISTVMSSVTTSLR 241 (443)
T ss_pred EEeccCCccCcceecccHHHHHHHHHHhcCCceEEechHHHHHHHHHhcCCCCCChHHHHHHHHHHHHhhhheee
Confidence 346677999999999999999999999999999999999999999999999999999999999999999999998
No 2
>PLN00221 tubulin alpha chain; Provisional
Probab=99.83 E-value=2.8e-21 Score=145.76 Aligned_cols=76 Identities=33% Similarity=0.516 Sum_probs=71.8
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
+..|-+.++.+++||||||++|++++|.+++|+++++||++|+++|.+.++++.|+|.++|++|||+++++|+++|
T Consensus 168 ~~~v~P~~~~~~~vv~~YN~~Lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~p~~~dlN~lIa~~is~~T~s~R 243 (450)
T PLN00221 168 GFTVYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVLLDNEAIYDICRRSLDIERPTYTNLNRLISQVISSLTASLR 243 (450)
T ss_pred eeEeeCCCcCCCCchhhhHHHHhHHHHHhhCceeeecchHHHHHHHHhhcCCCCCCHHHHHHHHhhhccccccccc
Confidence 4556667778999999999999999999999999999999999999999999999999999999999999999998
No 3
>PLN00222 tubulin gamma chain; Provisional
Probab=99.83 E-value=4.7e-21 Score=144.71 Aligned_cols=75 Identities=76% Similarity=0.986 Sum_probs=69.5
Q ss_pred ccccccc-ccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 9 LGSDIIE-ILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 9 ~~~~~~~-~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
+.|-+.+ +.+++||||||++|++++|.+++|+++++||+||+++|.+.+++++|+|.++|++|||+++++|+++|
T Consensus 169 ~~v~P~~~~~~~~vv~~YN~~lsl~~l~~~~D~~~~~dN~al~~ic~~~l~i~~p~~~dlN~lIA~~ls~~T~s~R 244 (454)
T PLN00222 169 YSVFPNQMETSDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIAVDRLHLENPTFAQTNSLVSTVMSASTTTLR 244 (454)
T ss_pred EEecCCCcccCCceeeecHHHHhHHHHHhcCCeeeEecHHHHHHHHHHhcCCCCCCHHHHHHHhccccCCcccccC
Confidence 4455554 46789999999999999999999999999999999999999999999999999999999999999988
No 4
>PTZ00010 tubulin beta chain; Provisional
Probab=99.83 E-value=5e-21 Score=144.14 Aligned_cols=75 Identities=35% Similarity=0.520 Sum_probs=70.9
Q ss_pred cccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 9 LGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 9 ~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
.+|-+.++.++++|||||++|++++|.+++|+++++||++|+++|.++++++.|+|.++|++|||+++++|+++|
T Consensus 167 ~~v~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~l~~~~p~~~~lN~lIaq~is~~t~~~R 241 (445)
T PTZ00010 167 FSVFPSPKVSDTVVEPYNATLSVHQLVENADESMCIDNEALYDICFRTLKLTTPTYGDLNHLVSAVMSGVTCCLR 241 (445)
T ss_pred eEecCCcccCccchhhhHHHHhHHHHHhcCCceeeeccHHHHHHHHHhccCCCCCHHHHHHHHHhhcccccccee
Confidence 455566777899999999999999999999999999999999999999999999999999999999999999988
No 5
>KOG1374|consensus
Probab=99.82 E-value=1.7e-20 Score=138.91 Aligned_cols=69 Identities=77% Similarity=1.076 Sum_probs=67.0
Q ss_pred cccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 15 EILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 15 ~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
.+.+|+||||||++|++++|++++|+++++||.||.+||.+.|.+.+|+|+++|+|+|.+|+++|+++|
T Consensus 176 d~ssdVVVQpYNsiLtL~rL~~nsD~vVVlDN~AL~ria~~~l~i~~ptF~~iNqLvstims~st~t~r 244 (448)
T KOG1374|consen 176 DESSDVVVQPYNSILTLKRLTENSDCVVVLDNTALHRIAADRLHIQNPTFSQINQLVSTIMSASTTTLR 244 (448)
T ss_pred CCccceEEecchHHHHHHHHhhCCCeEEEeccHHHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcccccc
Confidence 357899999999999999999999999999999999999999999999999999999999999999987
No 6
>cd02187 beta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-
Probab=99.79 E-value=7.4e-20 Score=137.07 Aligned_cols=75 Identities=35% Similarity=0.530 Sum_probs=69.7
Q ss_pred cccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 9 LGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 9 ~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
.+|-+.++.++++|||||++|++++|.+++|+++++||++|+++|.+++++..|+|.++|++|||+++++|+++|
T Consensus 166 ~~V~P~~~~~~~~v~~YN~~lsl~~l~~~~d~~i~~dN~al~~i~~~~~~~~~~~~~~~N~~ia~~is~~t~s~R 240 (425)
T cd02187 166 FSVFPSPKVSDTVVEPYNATLSVHQLVENSDETFCIDNEALYDICFRTLKLTNPTYGDLNHLVSAVMSGITTCLR 240 (425)
T ss_pred EEEecCCCcCcceeeehHHHHHHHHHHhcCCeEEEeecHHHHHHHHHhcCCCCCCHHHHHHHHhccccccceeee
Confidence 344455566799999999999999999999999999999999999999999999999999999999999999987
No 7
>cd02188 gamma_tubulin Gamma-tubulin is a ubiquitous phylogenetically conserved member of tubulin superfamily. Gamma is a low abundance protein present within the cells in both various types of microtubule-organizing centers and cytoplasmic protein complexes. Gamma-tubulin recruits the alpha/beta-tubulin dimers that form the minus ends of microtubules and is thought to be involved in microtubule nucleation and capping.
Probab=99.79 E-value=8.1e-20 Score=137.27 Aligned_cols=75 Identities=73% Similarity=0.959 Sum_probs=68.9
Q ss_pred ccccccccc-CceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 9 LGSDIIEIL-HDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 9 ~~~~~~~~~-s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
++|-+.++. ++++|||||++|++++|.+++|+++++||++|+++|.+.++++.|+|.++|++||+.++++|+++|
T Consensus 167 ~~V~P~~~~~s~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~i~~~~l~~~~~~~~~~N~~ia~~ls~~t~~~R 242 (431)
T cd02188 167 YSVFPNQDESSDVVVQPYNSILTLKRLILNADCVVVLDNTALNRIATDRLHIQNPTFDQINSLVSTVMSASTTTLR 242 (431)
T ss_pred EEecCCCccCCCccceecHHHHHHHHHHHhCCeeeecchHHHHHHHHHhcCCCCCCHHHHHHHHhccCCCccccee
Confidence 445554443 688999999999999999999999999999999999999999999999999999999999999998
No 8
>KOG1376|consensus
Probab=99.78 E-value=3.7e-20 Score=136.40 Aligned_cols=74 Identities=31% Similarity=0.537 Sum_probs=71.7
Q ss_pred ccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 10 GSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 10 ~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
.+...|+.+++++||||++|+.|...+++|++|+.||+++|++|++.+++++|.|.++|++|+|++|++|+++|
T Consensus 169 siypapqvSt~vvePynsiltth~tle~sD~sf~vdnea~Ydicr~~l~i~rPtyt~lnr~i~qVvSsitaSlr 242 (407)
T KOG1376|consen 169 SIYPAPQVSTAVVEPYNSILTTHTTLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITASLR 242 (407)
T ss_pred ccccCccccccccCCccccccceeecccCcceeecCchhhcchhhhccccCCccccchhhhHHhhhcccccccc
Confidence 36778999999999999999999999999999999999999999999999999999999999999999999997
No 9
>PTZ00335 tubulin alpha chain; Provisional
Probab=99.78 E-value=1.6e-19 Score=136.16 Aligned_cols=76 Identities=32% Similarity=0.509 Sum_probs=71.3
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
++.|.+.++.++++|||||++|++++|++++|+++++||++|+++|.+.++++.|+|.++|++||+.++++|+++|
T Consensus 168 ~~~v~P~~~~~~~~v~~YN~~Lsl~~L~e~~d~~~~~dN~al~~i~~~~~~~~~~~~~~~N~~Ia~~is~~t~~~r 243 (448)
T PTZ00335 168 GFTIYPSPQVSTAVVEPYNSVLSTHSLLEHTDVAVMLDNEAIYDICRRNLDIERPTYTNLNRLIAQVISSLTASLR 243 (448)
T ss_pred eEEecCCCCCCCcceeehHHHHhHHHHHhhCCeeeeechHHHHHHHHHhcCCCCCCHHHHHHHHHhhhcccccccc
Confidence 4456666778899999999999999999999999999999999999999999999999999999999999999987
No 10
>cd02186 alpha_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino
Probab=99.77 E-value=5.1e-19 Score=132.90 Aligned_cols=76 Identities=32% Similarity=0.542 Sum_probs=71.2
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
++.+-+.++.++++|||||++|++++|.+++|+++++||++|+++|.+.++++.|+|.++|++||+.++++|+++|
T Consensus 167 ~~~v~P~~~~~~~~v~~YN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~lN~iIa~~l~~~t~~~r 242 (434)
T cd02186 167 EFTVYPSPQVSTAVVEPYNSVLTTHSLLEHSDCSFMVDNEAIYDICRRNLDIERPTYTNLNRLIAQVVSSITASLR 242 (434)
T ss_pred eEEEeCCCCCCCCeeeehHHHHhHHHHHhhCCeeeeeccHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccccee
Confidence 4556666777899999999999999999999999999999999999999999999999999999999999999987
No 11
>PLN00220 tubulin beta chain; Provisional
Probab=99.76 E-value=2.9e-19 Score=134.55 Aligned_cols=76 Identities=39% Similarity=0.543 Sum_probs=71.3
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
+.+|-+.|+.++++|||||++|++++|.+++|+++++||++|+++|.+.+++..|.|.++|++||+.++++|+++|
T Consensus 166 ~~~v~P~~~~~~~~v~~yN~~lsl~~l~~~~d~~i~~dN~aL~~i~~~~~~i~~~sf~~~N~lIa~~is~it~slR 241 (447)
T PLN00220 166 TFSVFPSPKVSDTVVEPYNATLSVHQLVENADECMVLDNEALYDICFRTLKLTTPSFGDLNHLISATMSGVTCCLR 241 (447)
T ss_pred eeEEECCCcCCCCccchhHHHHhHHHHHhcCCceEEeehHHHHHHHHHhhcCCCCChHHHHhHhhccccccchhhc
Confidence 3455666778999999999999999999999999999999999999999999999999999999999999999987
No 12
>cd02189 delta_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. Delta-tubulin plays an essential role in forming the triplet microtubules of centrioles and basal bodies.
Probab=99.74 E-value=2.9e-18 Score=129.17 Aligned_cols=75 Identities=25% Similarity=0.373 Sum_probs=68.7
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
++.|.+.+ .++++|||||++|+++.|.+++|+++++||++|+++|.+.++++.|+|.++|++||+.++++|+|.|
T Consensus 162 ~~~v~P~~-~~~~~v~~yN~~lsl~~l~e~~d~~~~~dN~al~~~~~~~~~~~~~~~~~~N~~Ia~~l~~~~~~~r 236 (446)
T cd02189 162 NIVVWPYT-TGEVIVQNYNTVLTLAHLYESSDAIILLENDDIHRICSKLRNLKNVSLSDINKVIAHQLASLLQPSL 236 (446)
T ss_pred eeeccCCC-CCcchhhhhhHHhhHHHHHhhCCeEEEecHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHHhhHhh
Confidence 34444533 6899999999999999999999999999999999999999999999999999999999999999876
No 13
>PTZ00387 epsilon tubulin; Provisional
Probab=99.68 E-value=3.5e-17 Score=124.09 Aligned_cols=67 Identities=37% Similarity=0.651 Sum_probs=63.6
Q ss_pred cCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCC---------------------------CChHHHHH
Q psy3434 17 LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIEN---------------------------PSFAQINS 69 (83)
Q Consensus 17 ~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~---------------------------p~~~~lN~ 69 (83)
.++++|||||++|+++.|.+++|+++++||++|+++|.+.++++. |.|.++|+
T Consensus 175 ~~~~vv~pYN~~lsl~~l~e~~d~~i~~dN~aL~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~N~ 254 (465)
T PTZ00387 175 VDDVITSPYNSFFALRELIEHADCVLPLDNDALANIADSALSRKKKKLAKGNIKRGPQPHKYSVAKPTETKKLPYDKMNN 254 (465)
T ss_pred CCcceeccchhHHHHHHHHhhCCeEEEeehHHHHHHHHhhcCccccccccccccccccccccccccccccccccHHHHHH
Confidence 478899999999999999999999999999999999999988874 89999999
Q ss_pred HHHHHHhhhcccCC
Q psy3434 70 LVSTIMAVSTSTLR 83 (83)
Q Consensus 70 lia~~is~~t~slR 83 (83)
+|||.++++|+++|
T Consensus 255 iIa~~l~~~t~~~R 268 (465)
T PTZ00387 255 IVAQLLSNLTSSMR 268 (465)
T ss_pred HHHhhhccccceee
Confidence 99999999999987
No 14
>cd06059 Tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The alpha- and beta-tubulins are the major components of microtubules, while gamma-tubulin plays a major role in the nucleation of microtubule assembly. The delta- and epsilon-tubulins are widespread but unlike the alpha, beta, and gamma-tubulins they are not ubiquitous among eukaryotes. The alpha/beta-tubulin heterodimer is the structural subunit of microtubules. The alpha- and beta-tubulins share 40% amino-acid sequence identity, exist in several isotype forms, and undergo a variety of posttranslational modifications. The structures of alpha- and beta-tubulin are basically identical: each monomer is formed by a core of two beta-sheets surrounded by alpha-helices. The monomer structure is very compact, but can be divided into three regions based on function: the amino-termi
Probab=99.60 E-value=9.7e-16 Score=113.25 Aligned_cols=76 Identities=37% Similarity=0.565 Sum_probs=69.0
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
+.++-+.++.++++++|||++|++++|.+++|+++++||++|+++|.+.+++..|.|.++|++||+.++++|+++|
T Consensus 125 ~~~v~P~~~~~~~~v~~yN~~lsl~~L~e~sd~~i~~~N~~l~~~~~~~~~~~~~~~~~~N~iia~~l~~it~~~r 200 (382)
T cd06059 125 TFSIFPSPQGSSNVVEPYNSILSLNHLLENSDSVILFDNEALYNILTRQLDIDEPSFDDLNNIIAQIISSITASLR 200 (382)
T ss_pred eEEEeccCccCCccccchHHHHhHHHHHhcCCeeEEeehHHHHHHHHHhcCCCCCChHHHHHHHHHhhcccccccc
Confidence 3444555555668999999999999999999999999999999999999999999999999999999999999987
No 15
>cd00286 Tubulin_FtsZ Tubulin/FtsZ: Family includes tubulin alpha-, beta-, gamma-, delta-, and epsilon-tubulins as well as FtsZ, all of which are involved in polymer formation. Tubulin is the major component of microtubules, but also exists as a heterodimer and as a curved oligomer. Microtubules exist in all eukaryotic cells and are responsible for many functions, including cellular transport, cell motility, and mitosis. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ can polymerize into tubes, sheets, and rings in vitro and is ubiquitous in eubacteria, archaea, and chloroplasts.
Probab=99.55 E-value=4.9e-15 Score=107.22 Aligned_cols=64 Identities=50% Similarity=0.814 Sum_probs=62.2
Q ss_pred eeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 20 VVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 20 ~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
++++|||++|++++|.+++|+++++||++|+++|.+.+++..|.|.++|++||+.++++|+++|
T Consensus 136 ~~~~~yNa~l~l~~L~e~~d~~i~~dN~~l~~~~~~~~~~~~~~~~~~N~~ia~~i~~~t~~~r 199 (328)
T cd00286 136 VIVRPYNSILTLHTLTEHSDCLVVIDNEALFDICPRPLHIDKPTFDHINELLATALSSLTTPLR 199 (328)
T ss_pred chhhhhHHHHHHHHHHhcCCeEEEecchhHHHHhHHhcCCCCCCHHHHHHHHHhhccccccccc
Confidence 5899999999999999999999999999999999999999999999999999999999999987
No 16
>smart00864 Tubulin Tubulin/FtsZ family, GTPase domain. This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.
Probab=99.54 E-value=2.5e-15 Score=101.99 Aligned_cols=74 Identities=31% Similarity=0.468 Sum_probs=67.4
Q ss_pred cccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 9 LGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 9 ~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
+.+-+.|..++.+++|||++++++.|.+++|.++++||++|+++|.+++.+ .|.|.++|++|++.++++|+++|
T Consensus 116 ~~~~v~P~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~~~~-~~~~~~~N~~i~~~i~~i~~~~r 189 (192)
T smart00864 116 VAVVTKPFVFEGVVRPYNAELGLEELREHVDSLIVIDNDALLDICGRNLPI-RPAFKDANDLLAQAVSGITDLIR 189 (192)
T ss_pred EEEEEEeEeecchhHHHHHHHHHHHHHHhCCEEEEEEhHHHHHHHhccCCc-hHHHHHHHHHHHHHHHHHHHHHc
Confidence 344455777889999999999999999999999999999999999988876 79999999999999999999987
No 17
>cd02190 epsilon_tubulin The tubulin superfamily includes five distinct families, the alpha-, beta-, gamma-, delta-, and epsilon-tubulins and a sixth family (zeta-tubulin) which is present only in kinetoplastid protozoa. The epsilon-tubulins which are widespread but not ubiquitous among eukaryotes play a role in basal body/centriole morphogenesis.
Probab=99.46 E-value=4.4e-14 Score=104.80 Aligned_cols=62 Identities=37% Similarity=0.582 Sum_probs=55.9
Q ss_pred cccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 9 LGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 9 ~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
+.+-+.++ ++++|||||++|++++|.+++|+++++||++|+ .|.++|++||+.++++|+++|
T Consensus 136 ~~v~P~~~-~~~~v~~yN~~lsl~~l~~~~d~~i~~~N~~l~------------~~~~~N~~ia~~i~~~t~~~r 197 (379)
T cd02190 136 TSVYPSAD-DDVITSPYNSVLALRELIEHADCVLPIENQALV------------PFDAMNSIVANLLLNLTSSMR 197 (379)
T ss_pred EeecCCCC-CCceecccHHHHHHHHHHHhCCeeEEeccHHHH------------HHHHHHHHHHhhhcCccceee
Confidence 34445554 788999999999999999999999999999999 699999999999999999887
No 18
>cd02191 FtsZ FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.27 E-value=3.1e-12 Score=92.67 Aligned_cols=78 Identities=13% Similarity=0.157 Sum_probs=70.3
Q ss_pred eeecccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 4 VYFDTLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 4 ~~~~~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
.|.-++++-..|...+.+++|||+.++++.|.+++|+++++||++|+++|.+ +.++ +.|..+|+++++.++++|.++|
T Consensus 113 ~~~~~~~vvt~Pf~~Eg~~~~~NA~~~l~~L~~~~D~~iv~dN~~L~~~~~~-~~~~-~af~~~N~~ia~~i~~it~~i~ 190 (303)
T cd02191 113 IGTLTVAVVTLPFSDEGGIRMLNAAEGFQTLVREVDNLMVIPNEKLRQIGEK-ASLE-GAFDHADEVLVRAVGGLFGAIE 190 (303)
T ss_pred hCCCEEEEEeCCcccCCccchhhHHHHHHHHHHhCCEEEEEehHHHHHHhhc-CChH-HHHHHHHHHHHHHHHHHHHhhc
Confidence 3445677778888889999999999999999999999999999999999987 8875 6999999999999999998875
No 19
>KOG1375|consensus
Probab=99.22 E-value=5.7e-12 Score=93.08 Aligned_cols=55 Identities=36% Similarity=0.501 Sum_probs=50.1
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPS 63 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~ 63 (83)
+..+...|+ +++||||||+.|+++.+.+++|.+++.||++|++||.+.+++..|+
T Consensus 111 ~~sv~ps~k-sd~vvepyna~ls~~ql~en~~et~cidNeal~dic~~~lkl~~~~ 165 (369)
T KOG1375|consen 111 TFSVVPSPK-SDTVVEPYNATLSVHQLVENADETFCIDNEALYDICFRTLKLKTPS 165 (369)
T ss_pred cccccCccc-ccceecccccccchhhhhcCCCcccccccHHHHHHHhhhhcccCCC
Confidence 445555666 9999999999999999999999999999999999999999998887
No 20
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=99.13 E-value=2.4e-11 Score=87.76 Aligned_cols=76 Identities=12% Similarity=0.111 Sum_probs=69.4
Q ss_pred cccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 7 DTLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 7 ~~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
-++++-+.|...+..++|||+.++++.|.+++|+++++||++|+++|.+.+.+.. .|..+|+++++.++++|.++|
T Consensus 116 ~~~~vvt~Pf~~Eg~~~~~nA~~~l~~L~~~~d~~ividN~~L~~~~~~~~~i~~-af~~~n~~ia~~i~~it~~~~ 191 (304)
T cd02201 116 LTVAVVTKPFSFEGKKRMRQAEEGLEELRKHVDTLIVIPNDKLLEVVDKNLPLLE-AFKLADDVLAQAVKGISDLIT 191 (304)
T ss_pred CEEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHHHHhhccCCCHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence 4667777888888999999999999999999999999999999999988888875 799999999999999998876
No 21
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=99.12 E-value=2.9e-11 Score=89.18 Aligned_cols=74 Identities=14% Similarity=0.174 Sum_probs=67.4
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
++++=..|-..+.+++|||+.++++.|.+++|+++++||++|+++|.+ +.+. ..|..+|+++++.++++|.++|
T Consensus 134 ~vaivt~Pf~~Eg~~r~~nA~~~l~~L~~~~D~vividNd~L~~~~~~-~~i~-~af~~~N~iia~~i~~it~~ir 207 (349)
T TIGR00065 134 TVAVVTKPFKFEGLKRRKKAEEGLERLKQAVDTLIVIPNDKLLEVVPN-LPLN-DAFKVADDVLVRAVKGISELIT 207 (349)
T ss_pred EEEEEeCCccccchhhHHHHHHHHHHHHHhCCEEEEEeCHHHHHhhcC-CCHH-HHHHHHHHHHHHHHHhHHHhhc
Confidence 566667788888999999999999999999999999999999999987 8775 5999999999999999998876
No 22
>PF00091 Tubulin: Tubulin/FtsZ family, GTPase domain; InterPro: IPR003008 This domain is found in all tubulin chains, as well as the bacterial FtsZ family of proteins. These proteins are involved in polymer formation. Tubulin is the major component of microtubules, while FtsZ is the polymer-forming protein of bacterial cell division, it is part of a ring in the middle of the dividing cell that is required for constriction of cell membrane and cell envelope to yield two daughter cells. FtsZ and tubulin are GTPases, this entry is the GTPase domain. FtsZ can polymerise into tubes, sheets, and rings in vitro and is ubiquitous in bacteria and archaea.; GO: 0051258 protein polymerization, 0043234 protein complex; PDB: 3E22_B 1SA1_D 3DU7_B 2P4N_B 3DCO_B 1Z2B_D 1SA0_B 2XRP_C 1TVK_B 2BTQ_B ....
Probab=99.05 E-value=4.8e-11 Score=82.19 Aligned_cols=56 Identities=43% Similarity=0.684 Sum_probs=49.3
Q ss_pred cccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHH
Q psy3434 11 SDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQ 66 (83)
Q Consensus 11 ~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~ 66 (83)
+-+-|...+.+++|||++++++.|.+++|+++++||++|+++|.+++++++|.|.+
T Consensus 161 ~~ilP~~~e~~~~~~Na~~~l~~l~~~~d~~i~~dN~~l~~~~~~~l~~~~~~f~~ 216 (216)
T PF00091_consen 161 FSILPFSSEGVVEPYNALLSLSELQEYADSVILFDNDALYKICKNQLGIENPAFNE 216 (216)
T ss_dssp EEEE-CGGGSHHHHHHHHHHHHHHHHTSSEEEEEEHHHHHHHHHHTSSHSSHHHHH
T ss_pred ccccccccccccccceehhHHHHHHHhCCEEEEEcHHHHHHHHhccCCCCCCCcCC
Confidence 33445555889999999999999999999999999999999999999999998864
No 23
>cd02202 FtsZ_type2 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=98.99 E-value=2.1e-10 Score=84.51 Aligned_cols=72 Identities=15% Similarity=0.226 Sum_probs=60.9
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
++++-+.|-..+.+++|||+.++++.|.+++|.++++||++|+++|.. + .|.|..+|++|++.++.++++.|
T Consensus 131 ~~~iv~~P~~~eg~~~~~NA~~~l~~L~~~~D~viv~dNd~L~~~~~~---~-~~~f~~~N~~Ia~~i~~l~~~~r 202 (349)
T cd02202 131 VYALGVLPAREEGERYSANAARSLDALSEEADAIILFDNDAWKRKGES---V-EEAYDRINEEIARRIGLLLRAGE 202 (349)
T ss_pred EEEEEEecCCCCCchhhHHHHHHHHHHHHhCCEEEEEehHHHhhhccc---h-HHHHHHHHHHHHHHHHHHHHhhh
Confidence 344455565556689999999999999999999999999999999853 2 48999999999999999988664
No 24
>PRK13018 cell division protein FtsZ; Provisional
Probab=98.88 E-value=1.4e-09 Score=81.18 Aligned_cols=67 Identities=27% Similarity=0.405 Sum_probs=60.2
Q ss_pred cccCceeeccchhh---------hchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 15 EILHDVVVQPYNSL---------LTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 15 ~~~s~~vVepYNsi---------Ls~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
+.+..+|+.|||+- ++++.|.+++|+++++||++|+++| ..+.+. ..|..+|+++++.++++|.++|
T Consensus 143 ~ltv~vVt~Pf~~EG~~r~~nA~~gL~~L~e~~D~vividNd~L~~i~-~~~~i~-~af~~~N~iIa~~I~~It~~i~ 218 (378)
T PRK13018 143 ALVVGVVTKPFKFEGRARMQKAEEGIERLREAADTVIVIDNNRLLDIV-PNLPIA-DAFSVADEVIAETVKGITETIT 218 (378)
T ss_pred CCeEEEEEcCcccccHhHHHHHHHHHHHHHHhCCEEEEEecHHHHHHH-hcCCHH-HHHHHHHHHHHHHHHhhhhhcc
Confidence 45667899999855 9999999999999999999999999 778877 4799999999999999998875
No 25
>PRK09330 cell division protein FtsZ; Validated
Probab=98.38 E-value=1.4e-07 Score=70.73 Aligned_cols=75 Identities=11% Similarity=0.105 Sum_probs=66.5
Q ss_pred cccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccC
Q psy3434 7 DTLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTL 82 (83)
Q Consensus 7 ~~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~sl 82 (83)
=|+++=..|-..+..+.+||+.++++.|.+++|.++++||+.|.++|.+.+.+.. .|..+|+++++.+.+++..+
T Consensus 129 ltvaVvt~PF~fEG~~r~~nA~~gL~~L~~~~D~vIvi~Nd~L~~~~~~~~~l~~-Af~~ad~vL~~~v~~It~~i 203 (384)
T PRK09330 129 LTVAVVTKPFSFEGKKRMKQAEEGIEELRKHVDTLIVIPNDKLLEVVDKKTPLLD-AFKAADDVLRQAVQGITDLI 203 (384)
T ss_pred cEEEEEecCccccchhHHHHHHHHHHHHHHHCCEEEEEecHHHHhhccCCCCHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3666667788888999999999999999999999999999999999987777764 89999999999999988654
No 26
>cd06060 misato Human Misato shows similarity with Tubulin/FtsZ family of GTPases and is localized to the the outer membrane of mitochondria. It has a role in mitochondrial fusion and in mitochondrial distribution and morphology. Mutations in its Drosophila homolog (misato) lead to irregular chromosome segregation during mitosis. Deletion of the budding yeast homolog DML1 is lethal and unregulate expression of DML1 leads to mitochondrial dispersion and abnormalities in cell morphology. The Misato/DML1 protein family is conserved from yeast to human, but its exact function is still unknown.
Probab=96.83 E-value=0.00078 Score=52.14 Aligned_cols=62 Identities=18% Similarity=0.172 Sum_probs=45.1
Q ss_pred ceeeccchhhhchhhHhhhcccceeechHHHHHHHhh---------cCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 19 DVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACD---------RLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 19 ~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~---------~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
+.+++|||++|++++|.+++|+++++.-.. .|++ .+.+....-.+.-.++|-.+-++|.+.|
T Consensus 201 ~~vv~~yNs~LSl~~L~e~sdl~vPl~~~~---~~w~~~~~p~~~~~l~~d~~~~~htSAllA~aldT~TLp~R 271 (493)
T cd06060 201 KNSIRVLNTALGLAQLSEHSSLFVPLSLSG---TLWRKPGPPRTFPYLNYDAELPYHTSALLATALDTLTLPYR 271 (493)
T ss_pred hhHHHHHHHHHHHHHHHhcCCEEEEEeccc---ccccCCCCCCCCcccccCCCCchHHHHHHHHHHhhccccce
Confidence 578999999999999999999999996322 1211 1222333445566788889988888876
No 27
>COG0206 FtsZ Cell division GTPase [Cell division and chromosome partitioning]
Probab=73.00 E-value=2.2 Score=31.86 Aligned_cols=70 Identities=14% Similarity=0.129 Sum_probs=46.7
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhc
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVST 79 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t 79 (83)
|+++...|-..+.-.-.-|+.-.+..|.+++|..+.++|+.+.++-. ...+ .-.|...+.++.+.+.+++
T Consensus 128 tvavvt~Pf~~EG~~r~~~A~~gi~~L~~~~DtlIvi~Ndkll~~~~-~~~~-~~Af~~ad~vl~~~v~~i~ 197 (338)
T COG0206 128 TVAVVTLPFSFEGSPRMENAEEGIEELREVVDTLIVIPNDKLLKGKD-KTPI-AEAFNEADDVLGNAVKGIT 197 (338)
T ss_pred EEEEEEecchhcCchHHHHHHHHHHHHHHhCCcEEEEecHHHHhccC-cccH-HHHHHHHHHHHHHHHHHHH
Confidence 34555555444444455677888899999999999999999887643 1111 1245556777777776654
No 28
>PF14881 Tubulin_3: Tubulin domain
Probab=69.93 E-value=6.9 Score=26.48 Aligned_cols=49 Identities=20% Similarity=0.249 Sum_probs=39.8
Q ss_pred cchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 24 PYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 24 pYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
-.|.++++..|.++++..+.+.. .. ......+.-.++|.++-++|.|.|
T Consensus 131 ~~N~a~s~~~L~~~ssl~vPl~~----------~~-d~~s~~htSai~A~aidT~TLp~R 179 (180)
T PF14881_consen 131 LLNKALSLSELSEQSSLFVPLST----------LS-DASSNWHTSAILAAAIDTITLPYR 179 (180)
T ss_pred HHHHHHHHHHHHhhCCEEEecCC----------CC-cCCCcHHHHHHHHHHHHhccccCC
Confidence 47999999999999999999962 00 224455777899999999999988
No 29
>PHA02540 61 DNA primase; Provisional
Probab=68.56 E-value=2.6 Score=31.51 Aligned_cols=40 Identities=23% Similarity=0.136 Sum_probs=31.6
Q ss_pred eeecccccccccccCceeeccchhhhchhhHhhhcccceeechHHHH
Q psy3434 4 VYFDTLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALN 50 (83)
Q Consensus 4 ~~~~~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~ 50 (83)
-|||.|++ +.+|...-+.||.++.--..+.++++||++-.
T Consensus 230 GYmDvi~i-------~naVAtlGTaLT~~~~~~~~~vvl~~D~Da~~ 269 (337)
T PHA02540 230 GPIDSLFL-------PNSIAITGGDLDLNEVPFKDTRVWVLDNEPRH 269 (337)
T ss_pred CCcceeee-------ccceeeCccccCHhHhCccceEEEEECCchhH
Confidence 38999873 56788999999999985444778999999754
No 30
>PF03244 PSI_PsaH: Photosystem I reaction centre subunit VI; InterPro: IPR004928 Photosystem I, a membrane complex found in the chloroplasts of plants and cyanobacteria uses light energy to transfer electrons from plastocyanin to ferredoxin []. The electron transfer components of the photosystem include the primary electron donor chlorophyll P-700 and 5 electron acceptors: chlorophyll (A0), phylloquinone (A1) and three 4Fe-4S iron-sulphur centres, designated Fx, Fa and Fb. The role of this protein, subunit VI or PsaH, may be in docking of the light harvesting complex I antenna to the core complex.; GO: 0015979 photosynthesis, 0009522 photosystem I, 0009538 photosystem I reaction center; PDB: 2WSF_H 2WSE_H 2WSC_H 2O01_H.
Probab=63.96 E-value=2.6 Score=27.74 Aligned_cols=27 Identities=37% Similarity=0.532 Sum_probs=4.4
Q ss_pred cceeecc--cccccccc--cCceeeccchhh
Q psy3434 2 KSVYFDT--LGSDIIEI--LHDVVVQPYNSL 28 (83)
Q Consensus 2 ~~~~~~~--~~~~~~~~--~s~~vVepYNsi 28 (83)
||||||- |++.-+.| ++..--.|||..
T Consensus 50 kSvYFDL~Di~nTTG~WDlYGsD~ps~Yn~l 80 (140)
T PF03244_consen 50 KSVYFDLEDIENTTGQWDLYGSDAPSPYNPL 80 (140)
T ss_dssp -------S----SS-TTSS--SSSSS----S
T ss_pred ceeEEehhhccCCcccceecccCCCCCCCHH
Confidence 7999993 33333333 233445689865
No 31
>PLN00017 photosystem I reaction centre subunit VI; Provisional
Probab=52.90 E-value=5.7 Score=24.28 Aligned_cols=25 Identities=40% Similarity=0.547 Sum_probs=14.0
Q ss_pred cceeeccccccccccc------Cceeeccchhh
Q psy3434 2 KSVYFDTLGSDIIEIL------HDVVVQPYNSL 28 (83)
Q Consensus 2 ~~~~~~~~~~~~~~~~------s~~vVepYNsi 28 (83)
||||||- -|++.-. +..--.|||-.
T Consensus 11 ~SvYFDL--~Di~nTTGsWDlYG~d~~srY~~~ 41 (90)
T PLN00017 11 KSVYFDL--GDLENTTGSWDLYGSDAPSRYNPL 41 (90)
T ss_pred ceeEEEh--hhhccCcccceeeccCCCCCCChH
Confidence 7999994 3444322 23334577643
No 32
>PF12622 NpwBP: mRNA biogenesis factor
Probab=36.38 E-value=14 Score=19.95 Aligned_cols=13 Identities=31% Similarity=0.450 Sum_probs=9.7
Q ss_pred cceeecccccccc
Q psy3434 2 KSVYFDTLGSDII 14 (83)
Q Consensus 2 ~~~~~~~~~~~~~ 14 (83)
||+|||--.+=.+
T Consensus 3 kSiyydP~~NP~G 15 (48)
T PF12622_consen 3 KSIYYDPELNPLG 15 (48)
T ss_pred cceecCCccCCCC
Confidence 7899987766554
No 33
>PF07126 DUF1379: Protein of unknown function (DUF1379); InterPro: IPR009809 This family consists of several hypothetical bacterial proteins of around 180 residues in length. The function of this family is unknown.
Probab=34.02 E-value=25 Score=23.48 Aligned_cols=22 Identities=27% Similarity=0.317 Sum_probs=19.1
Q ss_pred CcceeecccccccccccCceee
Q psy3434 1 MKSVYFDTLGSDIIEILHDVVV 22 (83)
Q Consensus 1 ~~~~~~~~~~~~~~~~~s~~vV 22 (83)
.||.||++-+...+|+.++.|-
T Consensus 73 PKSWfF~~~~~~~~p~~g~lv~ 94 (153)
T PF07126_consen 73 PKSWFFDTQSGSVYPEEGELVQ 94 (153)
T ss_pred CCCCCCccCCCcccCCCCCEEE
Confidence 3899999999999999988764
Done!