Query psy3434
Match_columns 83
No_of_seqs 104 out of 681
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 16:37:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy3434.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/3434hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ryc_B Tubulin beta chain; alp 99.9 6.6E-23 2.3E-27 153.5 3.9 76 8-83 166-241 (445)
2 3ryc_A Tubulin alpha chain; al 99.9 2.1E-22 7.1E-27 151.0 3.7 76 8-83 168-243 (451)
3 3cb2_A Gamma-1-tubulin, tubuli 99.7 3.1E-18 1E-22 129.0 5.9 76 8-83 168-244 (475)
4 2bto_A Tubulin btuba; bacteria 99.7 4E-18 1.4E-22 128.3 4.6 76 8-83 170-245 (473)
5 2btq_B Tubulin btubb; structur 99.7 1.1E-17 3.7E-22 124.4 3.8 75 8-83 167-241 (426)
6 2r75_1 Cell division protein F 99.6 4.5E-17 1.5E-21 118.3 -0.5 75 8-83 124-198 (338)
7 1ofu_A FTSZ, cell division pro 99.6 2.5E-16 8.7E-21 113.6 0.8 75 8-83 128-202 (320)
8 2vxy_A FTSZ, cell division pro 99.6 4.4E-16 1.5E-20 114.8 1.6 75 8-83 128-202 (382)
9 1w5f_A Cell division protein F 99.5 3.2E-16 1.1E-20 114.5 -0.9 75 8-83 138-212 (353)
10 2vap_A FTSZ, cell division pro 99.5 4.7E-16 1.6E-20 114.0 -0.4 74 8-83 154-227 (364)
11 2vaw_A FTSZ, cell division pro 99.5 1.2E-15 3.9E-20 112.9 0.5 75 8-83 128-202 (394)
12 1rq2_A Cell division protein F 99.5 5.9E-16 2E-20 114.1 -1.6 75 8-83 128-202 (382)
13 4dxd_A Cell division protein F 99.5 2E-15 6.9E-20 111.6 -2.0 75 8-83 134-208 (396)
14 3v3t_A Cell division GTPase FT 99.1 7.4E-11 2.5E-15 86.4 3.3 59 13-83 128-191 (360)
15 3m89_A FTSZ/tubulin-related pr 98.4 2E-07 7E-12 69.5 4.6 72 8-81 182-274 (427)
16 4ei7_A Plasmid replication pro 93.6 0.085 2.9E-06 38.7 4.4 59 21-79 160-220 (389)
17 4g7x_A Putative uncharacterize 49.7 4.1 0.00014 23.9 0.3 15 2-16 34-48 (105)
18 3r4d_B Spike glycoprotein; imm 48.1 5.9 0.0002 27.5 1.0 27 5-31 108-136 (288)
19 1j2j_B ADP-ribosylation factor 45.8 16 0.00054 18.9 2.2 34 43-76 3-37 (45)
20 4g7w_A Putative uncharacterize 43.3 7.3 0.00025 24.4 0.8 15 2-16 51-65 (160)
21 2wfu_B Probable insulin-like p 38.4 11 0.00038 17.2 0.8 12 46-57 11-22 (26)
22 2wsc_H Photosystem I reaction 34.7 8.3 0.00028 24.5 0.0 27 2-28 54-84 (144)
No 1
>3ryc_B Tubulin beta chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_B* 3ryh_B* 3ryi_B* 3ut5_B* 4eb6_B* 4f6r_B* 4f61_B* 3hke_B* 3du7_B* 3e22_B* 3hkc_B* 3hkd_B* 3hkb_B* 3n2g_B* 3n2k_B* 1z2b_B* 2xrp_A* 4aqv_B* 4aqw_B* 4atu_A* ...
Probab=99.86 E-value=6.6e-23 Score=153.46 Aligned_cols=76 Identities=34% Similarity=0.501 Sum_probs=72.9
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
+.+|-+.|+++++||||||++|+++.|.+++|+++++||++|++||.+.+++++|+|.++|++|||+++++|+++|
T Consensus 166 ~~sV~Psp~~s~~vvepYNa~Lsl~~L~e~sD~~~~iDNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~slR 241 (445)
T 3ryc_B 166 TFSVMPSPKVSDTVVEPYNATLSVHQLVENTDETYSIDNEALYDICFRTLKLTTPTYGDLNHLVSATMSGVTTCLR 241 (445)
T ss_dssp EEEEECCGGGCSCTTHHHHHHHHHHHHHHHCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCccccccccchhhhhhHhhhhcccceeEeecchhHHHHHHhccCCCCCcchhhHHHHHhcchhhccccc
Confidence 5667788899999999999999999999999999999999999999999999999999999999999999999986
No 2
>3ryc_A Tubulin alpha chain; alpha-tubulin, beta-tubulin, GTPase, microtubule, tubulin, cell cycle; HET: GTP GDP; 2.10A {Ovis aries} PDB: 3ryf_A* 3ryh_A* 3ryi_A* 3ut5_A* 4eb6_A* 4f61_A* 4f6r_A* 3hke_A* 3hkc_A* 3hkd_A* 3hkb_A* 3n2g_A* 3n2k_A* 1sa0_A* 1sa1_A* 3edl_F* 1ffx_A* 1ia0_A* 2hxf_A* 2hxh_A* ...
Probab=99.85 E-value=2.1e-22 Score=150.97 Aligned_cols=76 Identities=33% Similarity=0.545 Sum_probs=72.7
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
+.++.+.|+++++||||||++|+++.|.+++|+++++||++|++||.+.|++++|+|.++|++|||+++++|+++|
T Consensus 168 ~~~v~P~~~~s~~vvepYNa~Lsl~~L~e~sD~~~~idNeaL~~ic~~~l~i~~p~y~~lN~lIa~~~s~iT~slR 243 (451)
T 3ryc_A 168 EFSIYPAPQVSTAVVEPYNSILTTHTTLEHSDCAFMVDNEAIYDICRRNLDIERPTYTNLNRLISQIVSSITASLR 243 (451)
T ss_dssp EEEEECCTTTCCCTTHHHHHHHHHHHHGGGCSEEEEEEHHHHHHHHHHHHCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCcccccceehHHHHHHHHHHhcccceeEeccHHHHHHHHHhccCCCCCchhhHHHHHhcccccccccc
Confidence 5567788889999999999999999999999999999999999999999999999999999999999999999986
No 3
>3cb2_A Gamma-1-tubulin, tubulin gamma-1 chain; lattice, microtubule, nucleation, GTPase, lateral interaction, structural protein, hydrolase; HET: GDP; 2.30A {Homo sapiens} PDB: 1z5v_A* 1z5w_A*
Probab=99.73 E-value=3.1e-18 Score=129.02 Aligned_cols=76 Identities=75% Similarity=0.973 Sum_probs=70.9
Q ss_pred ccccccccc-cCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEI-LHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~-~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
+.++-+.|. .++++++|||++|+++.|.+++|+++++||++|+++|.+.++++.|.|.++|++|++.++++|+++|
T Consensus 168 t~~V~P~~~e~se~vv~~yNa~lsl~~L~e~sD~~i~idNeaL~~i~~~~l~i~~p~f~~~N~lia~~vs~iT~~lr 244 (475)
T 3cb2_A 168 TYSVFPNQDEMSDVVVQPYNSLLTLKRLTQNADCLVVLDNTALNRIATDRLHIQNPSFSQINQLVSTIMSASTTTLR 244 (475)
T ss_dssp EEEEECCTTSCCSCTTHHHHHHHHHHHHHHSCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHTTTTS
T ss_pred EEEEECCccccccceeehhHhHHHHHHHHhhCCEEEEeccHHHHHHHhhcCCCCcchHHHHHHHHhhhccccccccc
Confidence 455666664 7899999999999999999999999999999999999999999999999999999999999999987
No 4
>2bto_A Tubulin btuba; bacterial tubulin, polymerization, cytoskeleton, protein COM cytoskeletal protein; HET: GTP; 2.5A {Prosthecobacter dejongeii} SCOP: c.32.1.1 d.79.2.1 PDB: 2btq_A*
Probab=99.71 E-value=4e-18 Score=128.25 Aligned_cols=76 Identities=29% Similarity=0.472 Sum_probs=71.8
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
+.++-+.|+.++++++|||++|+++.|.+++|+++++||++|+++|.+.++++.|.|.++|++|++.++++|+++|
T Consensus 170 t~~V~P~~~~~e~~v~~yNa~lsl~~L~e~~D~~i~idNeaL~~i~~~~l~i~~~~f~~~N~lia~~v~~it~~lr 245 (473)
T 2bto_A 170 SCAVLPSPQVSSVVTEPYNTVFALNTLRRSADACLIFDNEALFDLAHRKWNIESPTVDDLNLLITEALAGITASMR 245 (473)
T ss_dssp EEEEECCCCSSCEESHHHHHHHHHHHHHHTCSEEEEEEHHHHHHHHHHTSCCSSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCccccchhhHHHHHHHHHHHHhhCCeEEEeccHHHHHHhccccccCcchHHHHHHHHhhhcccchhhcc
Confidence 5667777788999999999999999999999999999999999999999999999999999999999999999876
No 5
>2btq_B Tubulin btubb; structural protein, cytoskeletal protein/complex, bacterial tubulin, cytoskeleton, polymerization, verrucomicrobia; HET: GDP; 3.2A {Prosthecobacter dejongeii}
Probab=99.68 E-value=1.1e-17 Score=124.45 Aligned_cols=75 Identities=39% Similarity=0.624 Sum_probs=71.0
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
|.+|-+.|..++++++|||++|+++.|.+++|+++++||++|+++|.+.++ ..|.|.++|++|++.++++|+++|
T Consensus 167 t~~V~p~p~~~e~~~~~yNa~lsl~~L~e~~D~~i~idN~al~~i~~~~l~-~~~~f~~~N~lia~~v~~it~~lr 241 (426)
T 2btq_B 167 TFSVVPSPLISDSAVEPYNAILTLQRILDNADGAVLLDNEALFRIAKAKLN-RSPNYMDLNNIIALIVSSVTASLR 241 (426)
T ss_dssp EEEEECCGGGCCCTTHHHHHHHHHHHHHHHCSEEEEEEHHHHHHHHHHHSS-SCCCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCccccchhhHHHHHHHHHHHHHhCCcceeeccHHHHHHHhccCC-CCcHHHHHHHHHHhhhcchhhhcc
Confidence 567777888899999999999999999999999999999999999999999 889999999999999999999876
No 6
>2r75_1 Cell division protein FTSZ; GTPase, tubulin-like, inhibitor, cell cycle; HET: 01G; 1.40A {Aquifex aeolicus} PDB: 2r6r_1*
Probab=99.60 E-value=4.5e-17 Score=118.29 Aligned_cols=75 Identities=19% Similarity=0.280 Sum_probs=70.4
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
|+++-+.|..++.+++|||++++++.|.+++|+++++||++|+++|.+.+.++ |.|.++|++++|.++++|.++|
T Consensus 124 t~~Vv~~P~~~eg~~~~ynA~~~l~~L~e~~D~~ividNe~L~~i~~~~l~i~-~af~~~N~~i~~~v~~it~~ir 198 (338)
T 2r75_1 124 TVAVATLPFRFEGPRKMEKALKGLEKLKESSDAYIVIHNDKIKELSNRTLTIK-DAFKEVDSVLSKAVRGITSIVV 198 (338)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHHHHHHHTCSEEEEEEHHHHHHTSCCCSSHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccchhhHHHHHHHHHHHHhcCCeEEEeccHHHHhhhhccCChH-HHHHHHHHHHHHHHhhhhhhhc
Confidence 56677789899999999999999999999999999999999999999999998 9999999999999999998765
No 7
>1ofu_A FTSZ, cell division protein FTSZ; bacterial cell division inhibitor, SULA protein; HET: GDP; 2.1A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=99.57 E-value=2.5e-16 Score=113.57 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=69.6
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
|+++-+.|...+.+++|||+.++++.|.+++|+++++||++|+++|.+.+.+. +.|..+|++++|.++++|.++|
T Consensus 128 t~~vv~~P~~~Eg~~~~~nA~~~l~~L~e~~D~~ividNe~L~~i~~~~l~i~-~af~~~n~~l~~~v~~it~~ir 202 (320)
T 1ofu_A 128 TVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLL-AAFAKADDVLAGAVRGISDIIK 202 (320)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHHHHHHTTCSEEEEEEHHHHHHHHGGGCCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCccccchhHHHHHHHHHHHHHHhCCEEEEEecHHhhhhhhcCCCHH-HHHHHHHHHHHHHhcccHhhcc
Confidence 55667779888999999999999999999999999999999999999999987 7899999999999999998765
No 8
>2vxy_A FTSZ, cell division protein FTSZ; GTP-binding, nucleotide-binding, septation, cytoplasm, B.subtilis, cell cycle; HET: CIT; 1.7A {Bacillus subtilis} PDB: 2vam_A* 2rhj_A* 2rhh_A* 2rhl_A* 2rho_A*
Probab=99.56 E-value=4.4e-16 Score=114.76 Aligned_cols=75 Identities=9% Similarity=0.107 Sum_probs=70.2
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
|+++-..|..++.+++|||+.|+++.|.+++|+++++||++|+++|.+.+.+. +.|.++|+++++.++++|.++|
T Consensus 128 tvsVvt~Pf~~Eg~~r~~nA~l~l~~L~e~~D~~ividNeaL~~i~~~~l~i~-~af~~~N~ll~~~vsgIt~~ir 202 (382)
T 2vxy_A 128 TVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPML-EAFREADNVLRQGVQGISDLIA 202 (382)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHHHHHHHHCSEEEEEEHHHHHHHSCTTCCHH-HHHHHHHHHHHHHHHHHHTTTS
T ss_pred eEEEEeCCcccccchhHHHHHHHHHHHHHhCCEEEEEccHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence 45667788889999999999999999999999999999999999999999987 7999999999999999999886
No 9
>1w5f_A Cell division protein FTSZ; complete proteome, GTP-binding, multigene family, septation, tubulin, filament, Z-ring, GTPase, domain swapped; HET: G2P; 2.0A {Thermotoga maritima} SCOP: c.32.1.1 d.79.2.1
Probab=99.54 E-value=3.2e-16 Score=114.46 Aligned_cols=75 Identities=12% Similarity=0.121 Sum_probs=70.0
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
|+++-+.|...+.+++|||+.++++.|.+++|+++++||++|+++|.+.+.+. |.|..+|++++|.++++|.++|
T Consensus 138 t~~Vvt~Pf~~Eg~~~~~nA~~~l~~L~e~~D~~ividNeaL~~i~~~~l~i~-~af~~~N~ll~~~v~~it~~ir 212 (353)
T 1w5f_A 138 TVAIVTTPFYFEGPERLKKAIEGLKKLRKHVDTLIKISNNKLMEELPRDVKIK-DAFLKADETLHQGVKGISELIT 212 (353)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHHHHHHHTCSEEEEEEHHHHHTTSCTTCCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEeCCcccccchhHHHHHHHHHHHHhhCCEEEEEecHHHHhhhcccCCHH-HHHHHHHHHHHHHhcCchhhcc
Confidence 56677789889999999999999999999999999999999999999999987 7899999999999999998775
No 10
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization, tubulin homolog, GTPase, septation, cell cycle, GTP-binding; HET: GDP; 1.70A {Methanocaldococcus jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1* 1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A*
Probab=99.54 E-value=4.7e-16 Score=113.99 Aligned_cols=74 Identities=18% Similarity=0.230 Sum_probs=68.5
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
|+++-+.|...+.+++|||++++++.|.+++|+++++||++|+++|. .+.+ .|.|.++|++++|.++++|.++|
T Consensus 154 t~~Vv~~Pf~~eg~~~~ynA~~~l~~L~e~~D~~ividNeaL~~i~~-~l~i-~~af~~~N~li~~~v~~it~~ir 227 (364)
T 2vap_A 154 TVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVP-NMPL-KLAFKVADEVLINAVKGLVELIT 227 (364)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHHHHHHTTCSEEEEEEGGGHHHHST-TCCH-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeCCCccccchhHHHHHHHHHHHHHHhCCeEEEEcHHHHHHHHc-cCCh-hhhhhhHHHHHHHHHhhhhHHhh
Confidence 45667778888889999999999999999999999999999999999 8888 89999999999999999998765
No 11
>2vaw_A FTSZ, cell division protein FTSZ; bacterial cell division protein, tubulin homolog, nucleotide-binding, GTPase, septation, cytoplasm; HET: GDP; 2.90A {Pseudomonas aeruginosa} SCOP: c.32.1.1 d.79.2.1
Probab=99.52 E-value=1.2e-15 Score=112.92 Aligned_cols=75 Identities=11% Similarity=0.102 Sum_probs=69.5
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
|+++-..|...+.+++|||+.++++.|.+++|+++++||++|+++|.+.+.+. +.|..+|+++++.++++|.++|
T Consensus 128 tvsVv~~Pf~~Eg~~r~ynA~~~l~~L~e~~D~~ividNeaL~~i~~~~l~i~-~af~~~N~li~~~v~~it~~ir 202 (394)
T 2vaw_A 128 TVAVVTRPFPFEGRKRMQIADEGIRALAESVDSLITIPNEKLLTILGKDASLL-AAFAKADDVLAGAVRGISDIIK 202 (394)
T ss_dssp EEEEEEECCGGGHHHHHHHHHHHHHHHHTTCSEEEEEEHHHHHHHHGGGCCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCcccccchhhHHHHHHHHHHHHhCCEEEEEecHHHHHHhhcCCChH-HHHHHHHHHHHHHHHHHHHHhc
Confidence 45666778888999999999999999999999999999999999999999987 7899999999999999998765
No 12
>1rq2_A Cell division protein FTSZ; cell cycle, tubulin, GTPase, signaling protein; HET: CIT; 1.86A {Mycobacterium tuberculosis} SCOP: c.32.1.1 d.79.2.1 PDB: 1rlu_A* 1rq7_A* 2q1y_A* 2q1x_A*
Probab=99.51 E-value=5.9e-16 Score=114.10 Aligned_cols=75 Identities=12% Similarity=0.117 Sum_probs=69.7
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
|+++-..|..++.+++|||++|+++.|.+++|+++++||++|+++|.+.+.+. +.|..+|+++++.++++|.++|
T Consensus 128 tvsVv~~Pf~~Eg~~~~~nA~l~l~~L~e~~D~~ividNeaL~~i~~~~l~i~-~af~~~N~li~~~vs~it~~ir 202 (382)
T 1rq2_A 128 TVGVVTRPFSFEGKRRSNQAENGIAALRESCDTLIVIPNDRLLQMGDAAVSLM-DAFRSADEVLLNGVQGITDLIT 202 (382)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHHHHHHHHCSEEEEEEHHHHTTSSCTTCCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEecCcccccchHHHHHHHHHHHHHHhCCEEEEEechhHHHHhcCCCCHH-HHHHHHHHHHHHHHHHHHHHHc
Confidence 45667788889999999999999999999999999999999999999999987 8999999999999999998775
No 13
>4dxd_A Cell division protein FTSZ; rossmann fold, GTPase, GTP binding, cell cycle-inhibitor COM; HET: GDP 9PC; 2.01A {Staphylococcus aureus} PDB: 3vo8_A*
Probab=99.46 E-value=2e-15 Score=111.64 Aligned_cols=75 Identities=11% Similarity=0.121 Sum_probs=69.3
Q ss_pred ccccccccccCceeeccchhhhchhhHhhhcccceeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
|+++-..|...+.+++|||++++++.|.+++|+++++||++|+++|.+.+.+. +.|..+|++++|.++++|.++|
T Consensus 134 tvsVVt~Pf~~Eg~~r~yNA~lgl~~L~e~vD~vIvIdNeaL~~I~~~~l~i~-~af~~aN~ll~q~VsgIT~~ir 208 (396)
T 4dxd_A 134 TVGVVTRPFSFEGRKRQTQAAAGVEAMKAAVDTLIVIPNDRLLDIVDKSTPMM-EAFKEADNVLRQGVQGISDLIA 208 (396)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHHHHHHHHSSEEEEEEGGGGGGTCCTTCCHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEeCCccccchHHHHHHHHHHHHHHhhCCEEEEEcCHHHHHhhcccccHH-HHHHHHHHHHHHHHHhhhhhhc
Confidence 55666678889999999999999999999999999999999999999989887 5999999999999999998875
No 14
>3v3t_A Cell division GTPase FTSZ, diverged; TUBZ, tubulin/FTSZ related, rossmann fold, GTP bindi structural protein; 2.30A {Clostridium botulinum C}
Probab=99.05 E-value=7.4e-11 Score=86.43 Aligned_cols=59 Identities=12% Similarity=0.151 Sum_probs=51.0
Q ss_pred cccccCceeeccchhhhchhhHhh---hcccc--eeechHHHHHHHhhcCCCCCCChHHHHHHHHHHHhhhcccCC
Q psy3434 13 IIEILHDVVVQPYNSLLTLKRLTL---NADCV--VVLDNTALNRIACDRLHIENPSFAQINSLVSTIMAVSTSTLR 83 (83)
Q Consensus 13 ~~~~~s~~vVepYNsiLs~~~l~e---~~d~~--~~~dN~aL~~ic~~~l~i~~p~~~~lN~lia~~is~~t~slR 83 (83)
+.|--.+.+++|||++|+++.|.+ ++|++ +++||++ .|.|.++|++++|.++++|.++|
T Consensus 128 V~Pf~~Egvv~pyNA~l~l~~L~e~sD~vD~lcvividNea------------~~ay~~lN~lIaq~vs~lt~~l~ 191 (360)
T 3v3t_A 128 VLPKATEDIDEHMNAIACWNDIMRSTNEGKDISIYLLDNNK------------REKESDINKEFATLFNDFMNMSE 191 (360)
T ss_dssp EECCTTSCHHHHHHHHHHHHHHHHHTTTTTSSEEEEEEGGG------------SSSHHHHHHHHHHHHHHHHGGGS
T ss_pred EeCCCccchhhHHHHHHHHHHHHhhhccCCceEEEEEeCCC------------chhHHHHHHHHHHHHHHHHHhhc
Confidence 345444679999999999999999 55555 9999998 69999999999999999999876
No 15
>3m89_A FTSZ/tubulin-related protein; partition, TUBZ, GTP-binding, nucleotide-BIND structural protein; HET: GSP; 2.00A {Bacillus thuringiensis} PDB: 3m8k_A 2xka_A* 2xkb_A*
Probab=98.42 E-value=2e-07 Score=69.55 Aligned_cols=72 Identities=17% Similarity=0.034 Sum_probs=55.0
Q ss_pred ccccccccccCceeeccchhhhchhhH---hh------------hcccceeechHHHHHHHhhcCC--CCC---CChH-H
Q psy3434 8 TLGSDIIEILHDVVVQPYNSLLTLKRL---TL------------NADCVVVLDNTALNRIACDRLH--IEN---PSFA-Q 66 (83)
Q Consensus 8 ~~~~~~~~~~s~~vVepYNsiLs~~~l---~e------------~~d~~~~~dN~aL~~ic~~~l~--i~~---p~~~-~ 66 (83)
++++-+.|--.+ .++||++++++.| .+ ++|+++++||+++.++|.+... ... |.|. .
T Consensus 182 ~~~vvt~P~~~e--~~~~NA~~~l~~L~~L~~~~~~~~~~~~~~~~D~vividNe~l~~i~~~~~~~~~~~~~~~af~~~ 259 (427)
T 3m89_A 182 VSMLISLPSGDP--DEINNALVLLSEIDEFMREQDRLFGNSDIKPLANVIVNDNTQMQRIIESQKGTKDLKNRYVNWKEV 259 (427)
T ss_dssp EEEEEEECCSCH--HHHHHHHHHHHHHHHHHHHHHHHSCTTSCCSEEEEEEEEHHHHHHHHHHSSCSSSCCCSCSCHHHH
T ss_pred EEEEEEECCCCc--cHHHHHHHHHHHHHHHhhhhcccccccccccccEEEEEehHHHHHHHhhccccccccchhhHHHHH
Confidence 444555553323 4679999999996 55 9999999999999888866543 233 4999 7
Q ss_pred HHHHHHHHHhhhccc
Q psy3434 67 INSLVSTIMAVSTST 81 (83)
Q Consensus 67 lN~lia~~is~~t~s 81 (83)
+|++|++.+++++..
T Consensus 260 aN~~Ia~~I~~I~~~ 274 (427)
T 3m89_A 260 ANDNVVSTLHEINII 274 (427)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999998763
No 16
>4ei7_A Plasmid replication protein REPX; GTP hydrolase, plasmid segregation; HET: GDP; 1.90A {Bacillus cereus} PDB: 4ei8_A 4ei9_A*
Probab=93.61 E-value=0.085 Score=38.67 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=44.0
Q ss_pred eeccchhhhchhhHhhhcccceeechHHHHHHHhhcCC--CCCCChHHHHHHHHHHHhhhc
Q psy3434 21 VVQPYNSLLTLKRLTLNADCVVVLDNTALNRIACDRLH--IENPSFAQINSLVSTIMAVST 79 (83)
Q Consensus 21 vVepYNsiLs~~~l~e~~d~~~~~dN~aL~~ic~~~l~--i~~p~~~~lN~lia~~is~~t 79 (83)
..++++.+-.+....+.+|.++++||+.|.++...+-. .-...|...|+++++.+.++.
T Consensus 160 ~~~A~~~i~~l~~~~~~vd~~ividN~~l~~~~~~~~~~~~~~~af~~an~~l~~~v~~i~ 220 (389)
T 4ei7_A 160 LENATSRIRSIAMNQEAFGSIVLIDNAKLYRKFEEENPSALANEYTSYSNKYIADALHEIN 220 (389)
T ss_dssp HHHHHHHHHHHHHTGGGSSEEEEEEHHHHHHHHHHHCTTCCGGGHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCeEEEeccHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 44567777777666788999999999999999865322 122458889999998776654
No 17
>4g7x_A Putative uncharacterized protein; membrane, protein binding-protein binding complex; 1.44A {Vibrio cholerae}
Probab=49.68 E-value=4.1 Score=23.92 Aligned_cols=15 Identities=40% Similarity=0.313 Sum_probs=13.4
Q ss_pred cceeecccccccccc
Q psy3434 2 KSVYFDTLGSDIIEI 16 (83)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (83)
.||.||.|+.||++.
T Consensus 34 qsvlfdgcmldiekd 48 (105)
T 4g7x_A 34 QSVLFDGCMLDIEKD 48 (105)
T ss_dssp CEEEETTEEEEECEE
T ss_pred hhheecceEEeeecc
Confidence 689999999999975
No 18
>3r4d_B Spike glycoprotein; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Murine hepatitis virus}
Probab=48.15 E-value=5.9 Score=27.50 Aligned_cols=27 Identities=37% Similarity=0.582 Sum_probs=18.8
Q ss_pred eecc--cccccccccCceeeccchhhhch
Q psy3434 5 YFDT--LGSDIIEILHDVVVQPYNSLLTL 31 (83)
Q Consensus 5 ~~~~--~~~~~~~~~s~~vVepYNsiLs~ 31 (83)
||-| ||..+....-++|+||||-+|-.
T Consensus 108 ~FptivIGS~FvntSYtvVveP~ngil~~ 136 (288)
T 3r4d_B 108 YFPTIVIGSLFGYTSYTVVIEPYNGVIMA 136 (288)
T ss_dssp CSCCEEEESSCSTTSCEEEEEEETTEEEE
T ss_pred ecceEEEeceeccceEEEEEeccCCEEEE
Confidence 4444 45566666668999999887643
No 19
>1j2j_B ADP-ribosylation factor binding protein GGA1, ADP-ribosylation factor 1; protein transport; HET: GTP; 1.60A {Homo sapiens} SCOP: a.7.8.1
Probab=45.84 E-value=16 Score=18.90 Aligned_cols=34 Identities=12% Similarity=0.374 Sum_probs=27.0
Q ss_pred eechHHHHHHHhhcCCCCCCC-hHHHHHHHHHHHh
Q psy3434 43 VLDNTALNRIACDRLHIENPS-FAQINSLVSTIMA 76 (83)
Q Consensus 43 ~~dN~aL~~ic~~~l~i~~p~-~~~lN~lia~~is 76 (83)
.||++.-.....+.+....|. ....|++|...+.
T Consensus 3 iF~deekSk~L~~Ll~s~~P~Dlq~AN~LiK~mv~ 37 (45)
T 1j2j_B 3 IFEDEEKSKMLARLLKSSHPEDLRAANKLIKEMVQ 37 (45)
T ss_dssp CCCCHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHH
T ss_pred hhhhHHHHHHHHHHHHcCChhhHHHHHHHHHHHhh
Confidence 577888777777778888886 8899999988764
No 20
>4g7w_A Putative uncharacterized protein; beta barrel, TOLA binding domain, selenomethionine-substitut protein, phage coat, protein binding; 2.90A {Vibrio cholerae}
Probab=43.29 E-value=7.3 Score=24.35 Aligned_cols=15 Identities=40% Similarity=0.313 Sum_probs=13.4
Q ss_pred cceeecccccccccc
Q psy3434 2 KSVYFDTLGSDIIEI 16 (83)
Q Consensus 2 ~~~~~~~~~~~~~~~ 16 (83)
.||.||.|+.||++.
T Consensus 51 qsvlfdgcmldiekd 65 (160)
T 4g7w_A 51 QSVLFDGCMLDIEKD 65 (160)
T ss_dssp CEEEETTEEEEECBC
T ss_pred HhhhhcceeEeeecc
Confidence 689999999999975
No 21
>2wfu_B Probable insulin-like peptide 5 B chain; cleavage on PAIR of basic residues, signaling protein; 1.85A {Drosophila melanogaster} PDB: 2wfv_B
Probab=38.44 E-value=11 Score=17.24 Aligned_cols=12 Identities=8% Similarity=-0.020 Sum_probs=9.1
Q ss_pred hHHHHHHHhhcC
Q psy3434 46 NTALNRIACDRL 57 (83)
Q Consensus 46 N~aL~~ic~~~l 57 (83)
+|+|+.+|.+.+
T Consensus 11 ~eaL~~vC~~GF 22 (26)
T 2wfu_B 11 MDMLRVACPNGF 22 (26)
T ss_dssp HHHHHHHCSSCC
T ss_pred HHHHHHHHhccC
Confidence 578999996644
No 22
>2wsc_H Photosystem I reaction center subunit VI, chloroplastic; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Spinacia oleracea} PDB: 2wse_H* 2wsf_H* 2o01_H* 3lw5_H*
Probab=34.71 E-value=8.3 Score=24.52 Aligned_cols=27 Identities=41% Similarity=0.520 Sum_probs=11.0
Q ss_pred cceeecc--ccccccccc--Cceeeccchhh
Q psy3434 2 KSVYFDT--LGSDIIEIL--HDVVVQPYNSL 28 (83)
Q Consensus 2 ~~~~~~~--~~~~~~~~~--s~~vVepYNsi 28 (83)
||||||- +++..+.|- +..--.|||..
T Consensus 54 kSvYFDL~Di~nTTG~WDlYG~D~~s~Yn~l 84 (144)
T 2wsc_H 54 KSVYFDLEDIANTTGQWDVYGSDAPSPYNSL 84 (144)
T ss_dssp -----CCSCCCCSSCTTSSCCSSCSCCCCCS
T ss_pred ceEEEEhhhcccccccceeccccCCCCCChH
Confidence 7999994 333333332 33345688865
Done!